##fileformat=VCFv4.2
##FILTER=<ID=GOF,Description="Variant fails goodness-of-fit test.">
##FILTER=<ID=HapScore,Description="Too many haplotypes are supported by the data in this region.">
##FILTER=<ID=MQ,Description="Root-mean-square mapping quality across calling region is low.">
##FILTER=<ID=Q20,Description="Variant quality is below 20.">
##FILTER=<ID=QD,Description="Variants fail quality/depth filter.">
##FILTER=<ID=QualDepth,Description="Variant quality/Read depth ratio is low.">
##FILTER=<ID=REFCALL,Description="This line represents a homozygous reference call">
##FILTER=<ID=SC,Description="Variants fail sequence-context filter. Surrounding sequence is low-complexity">
##FILTER=<ID=alleleBias,Description="Variant frequency is lower than expected for het">
##FILTER=<ID=badReads,Description="Variant supported only by reads with low quality bases close to variant position, and not present on both strands.">
##FILTER=<ID=hp10,Description="Flanking sequence contains homopolymer of length 10 or greater">
##FILTER=<ID=strandBias,Description="Variant fails strand-bias filter">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allelic frequency for the alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.8-1-0-gf15c1c3ef,Date="Thu Apr 10 22:49:13 UTC 2025",Epoch=1744325353846,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/MoCha/patidarr/ref/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=10000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=true use_jdk_inflater=true disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=HC source=/lscratch/53589249//HC.vcf)]), (RodBindingCollection [(RodBinding name=Platypus source=/lscratch/53589249//PL.vcf)])] out=/vf/users/MoCha/processedDATA/268233/20170910/268233~264-R~J1-PDC~WES/calls/268233~264-R~J1-PDC~WES.merged.vcf genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=HC,Platypus printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BRF,Number=1,Type=Float,Description="Fraction of reads around this variant that failed filters">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FR,Number=.,Type=Float,Description="Estimated population frequency of variant">
##INFO=<ID=FS,Number=.,Type=Float,Description="Fisher's exact test for strand bias (Phred scale)">
##INFO=<ID=HP,Number=1,Type=Integer,Description="Homopolymer run length around variant locus">
##INFO=<ID=HapScore,Number=.,Type=Integer,Description="Haplotype score measuring the number of haplotypes the variant is segregating into in a window">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=MGOF,Number=.,Type=Integer,Description="Worst goodness-of-fit value reported across all samples">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=MMLQ,Number=1,Type=Float,Description="Median minimum base quality for bases around variant">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NF,Number=.,Type=Integer,Description="Total number of forward reads containing this variant">
##INFO=<ID=NR,Number=.,Type=Integer,Description="Total number of reverse reads containing this variant">
##INFO=<ID=PP,Number=.,Type=Float,Description="Posterior probability (phred scaled) that this variant segregates">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant-quality/read-depth for this variant">
##INFO=<ID=ReadPosRankSum,Number=.,Type=Float,Description="Mann-Whitney Rank sum test for difference between in positions of variants in reads from ref and alt">
##INFO=<ID=SC,Number=1,Type=String,Description="Genomic sequence 10 bases either side of variant position">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=START,Number=.,Type=Integer,Description="Start position of reference call block">
##INFO=<ID=SbPval,Number=.,Type=Float,Description="Binomial P-value for strand bias test">
##INFO=<ID=Size,Number=.,Type=Integer,Description="Size of reference call block">
##INFO=<ID=Source,Number=.,Type=String,Description="Was this variant suggested by Playtypus, Assembler, or from a VCF?">
##INFO=<ID=TC,Number=1,Type=Integer,Description="Total coverage at this locus">
##INFO=<ID=TCF,Number=1,Type=Integer,Description="Total forward strand coverage at this locus">
##INFO=<ID=TCR,Number=1,Type=Integer,Description="Total reverse strand coverage at this locus">
##INFO=<ID=TR,Number=.,Type=Integer,Description="Total number of reads containing this variant">
##INFO=<ID=WE,Number=1,Type=Integer,Description="End position of calling window">
##INFO=<ID=WS,Number=1,Type=Integer,Description="Starting position of calling window">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##SentieonCommandLine.Haplotyper=<ID=Haplotyper,Version="sentieon-genomics-201711",Date="2025-04-10T22:42:52Z",CommandLine="/data/MoCha/patidarr/sentieon/sentieon-genomics-201711/libexec/driver --temp_dir /lscratch/53588887// -t 26 -r /data/MoCha/patidarr/ref/ucsc.hg19.fasta -i 268233/20170910/268233~264-R~J1-PDC~WES/268233~264-R~J1-PDC~WES.bwa.final.bam --interval /data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed --algo Haplotyper -d /data/MoCha/patidarr/ref/dbsnp_138.hg19.vcf --min_base_qual 20 --min_map_qual 30 /lscratch/53588887//268233~264-R~J1-PDC~WES.HC_DNASeq.raw.vcf">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##fileDate=2025-04-10
##joinAdjacentSNPs_command=/data/MoCha/patidarr/ngs_pipeline/scripts/joinAdjacentSNPs_up.py -v 268233/20170910/268233~264-R~J1-PDC~WES/calls/268233~264-R~J1-PDC~WES.HC_DNASeq.raw.vcf -o /lscratch/53589249//HC.vcf.tmp 1 268233/20170910/268233~264-R~J1-PDC~WES/268233~264-R~J1-PDC~WES.bwa.final.bam /data/MoCha/patidarr/ref/ucsc.hg19.2bit
##platypusOptions={'assemblyRegionSize': 1500, 'trimReadFlank': 0, 'assembleBadReads': 1, 'bamFiles': ['268233/20170910/268233~264-R~J1-PDC~WES/268233~264-R~J1-PDC~WES.bam'], 'minVarDist': 9, 'trimSoftClipped': 1, 'minReads': 2, 'qualBinSize': 1, 'refFile': '/data/MoCha/patidarr/ref/ucsc.hg19.fasta', 'maxHaplotypes': 50, 'filterVarsByCoverage': 1, 'maxSize': 1500, 'originalMaxHaplotypes': 50, 'skipDifficultWindows': 0, 'parseNCBI': 0, 'skipRegionsFile': None, 'noCycles': 0, 'trimAdapter': 1, 'minPosterior': 5, 'assembleAll': 1, 'trimOverlapping': 1, 'filterDuplicates': 1, 'abThreshold': 0.001, 'minFlank': 10, 'bufferSize': 1000000, 'fileCaching': 0, 'useEMLikelihoods': 0, 'coverageSamplingLevel': 30, 'calculateFlankScore': 0, 'logFileName': 'log/platypus.268233.20170910.268233~264-R~J1-PDC~WES', 'nCPU': 32, 'filterReadsWithUnmappedMates': 1, 'qdThreshold': 10, 'maxVariants': 8, 'scThreshold': 0.95, 'filterReadsWithDistantMates': 1, 'maxReads': 100000000.0, 'badReadsWindow': 11, 'genIndels': 1, 'largeWindows': 0, 'minMapQual': 20, 'maxVarDist': 15, 'maxGOF': 30, 'rlen': 150, 'minGoodQualBases': 20, 'refCallBlockSize': 1000, 'countOnlyExactIndelMatches': 0, 'longHaps': 0, 'HLATyping': 0, 'filterReadPairsWithSmallInserts': 1, 'minBaseQual': 20, 'getVariantsFromBAMs': 1, 'genSNPs': 1, 'assemble': 0, 'assemblerKmerSize': 15, 'minVarFreq': 0.05, 'alignScoreFile': '', 'verbosity': 2, 'sourceFile': None, 'compressReads': 0, 'rmsmqThreshold': 40, 'filteredReadsFrac': 0.7, 'outputRefCalls': 0, 'badReadsThreshold': 15, 'hapScoreThreshold': 4, 'regions': ['/data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed'], 'sbThreshold': 0.001, 'output': '268233/20170910/268233~264-R~J1-PDC~WES/calls/268233~264-R~J1-PDC~WES.Platypus.raw.vcf', 'assembleBrokenPairs': 0, 'mergeClusteredVariants': 1, 'maxGenotypes': 1275, 'nInd': 1}
##reference=file:///data/MoCha/patidarr/ref/ucsc.hg19.fasta
##source=Platypus_Version_0.8.1.1
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	268233~264-R~J1-PDC~WES
chr1	69511	rs75062661	A	G	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:279,133:0.32:412
chr1	752894	rs3131971	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	762061	rs191348624	T	A	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:80,154:0.66:234
chr1	762273	rs3115849	G	A	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	762409	.	G	C	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-4.069;QD=15.76;ReadPosRankSum=1.638;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr1	762589	rs71507461	G	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.30;QD=41.95;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	762592	rs71507462	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.51;QD=43.61;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	762601	rs71507463	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.03;QD=42.61;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	762632	rs61768173	T	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	792263	rs1044922	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.71;QD=25.42;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	792480	rs2905036	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	866319	rs9988021	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	876499	rs4372192	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr1	877715	rs6605066	C	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	877831	rs6672356	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	878331	rs148327885	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:199,97:0.33:296
chr1	879244	.	C	T	2743.77	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:68,124:0.65:192
chr1	879676	rs6605067	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	879687	rs2839	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	880238	rs3748592	A	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	880639	rs35916504	TC	T	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	881627	rs2272757	G	A	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:59,156:0.73:215
chr1	882033	rs2272756	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.223;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr1	883625	rs4970378	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	13557.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=3.827;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.036;QD=35.77;ReadPosRankSum=-0.192;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:1,378:1.00:379
chr1	886788	rs10465242	G	A	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,382:1.00:383
chr1	886817	rs10465241	C	T	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	887560	rs3748595	A	C	11207.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr1	887801	rs3828047	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	888639	rs3748596	T	C	19744.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:2,769:1.00:771
chr1	888659	rs3748597	T	C	20164.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr1	889158	rs13303056	GA	CC	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	889638	rs13303206	G	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	892745	rs13303227	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	894573	rs13303010	G	A	11851.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	897325	rs4970441	G	C	23865.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,888:1.00:888
chr1	897564	rs13303229	T	C	31158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=1204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=1.659;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,1182:1.00:1183
chr1	898323	rs6605071	T	C	10015.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.113;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	899928	rs6677386	G	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=41.10;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	899937	rs143296006	GG	TC	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=48.00;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	899942	rs71509448	G	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=47.66;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	899989	rs6669071	A	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=43.99;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	900001	rs28754834	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=43.99;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	900009	rs6704181	C	G	1141.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=43.91;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	900010	.	G	GC	1132.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=43.57;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	900285	rs4970435	CA	TG	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	900505	rs28705211	G	C	1937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-1.429;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:358,131:0.27:489
chr1	909073	rs3892467	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:102,49:0.32:151
chr1	909238	rs3829740	G	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	909309	rs3829738	T	C	3719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-1.040;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:96,180:0.65:276
chr1	909768	rs2340593	A	G	10638.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	911595	rs7417106	A	G	2905.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.62;ReadPosRankSum=-1.038;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	912033	.	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.501;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=33.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=6.893;SOR=3.475;set=HC	GT:AD:AF:DP	0/1:53,31:0.37:84
chr1	912049	rs9803103	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.750;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=11.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=2.046;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr1	912103	.	G	A	809	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=4;HapScore=1;MGOF=72;MMLQ=27;MQ=58.46;NF=3;NR=32;PP=809;QD=24.1077489299;SC=CACCAACCCCGGGAACCGCCT;SbPval=0.7;Source=Platypus;TC=38;TCF=4;TCR=34;TR=35;WE=912111;WS=912093;set=Platypus	GT:AD:AF:DP	1/1:3,35:0.92:38
chr1	914192	rs2340595	G	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	914333	rs13302979	C	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	914852	rs13303368	G	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	914876	rs13302983	T	C	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	914940	rs13303033	T	C	12122.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	915227	rs13303355	A	G	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	916549	rs6660139	A	G	10098.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr1	935222	rs2298214	C	A	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	948846	rs3841266	T	TA	1153.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	948870	rs4615788	C	G	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	948921	rs15842	T	C	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	949654	rs8997	A	G	12725.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr1	949925	rs2799070	C	T	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	970549	rs56001364	TG	T	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.900;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr1	976481	.	CGGAGCGGGGCG	C	2987	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=8;HapScore=1;MGOF=56;MMLQ=19;MQ=58.91;NF=3;NR=12;PP=2987;QD=20;SC=GCCTGGGGGGCGGAGCGGGGC;SbPval=0.78;Source=Platypus;TC=19;TCF=5;TCR=14;TR=15;WE=976499;WS=976471;set=Platypus	GT:AD:AF:DP	1/1:4,15:0.79:19
chr1	976514	rs79290478	C	A	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=25.80;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	977330	rs2799066	T	C	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	977570	rs2710876	G	A	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	978603	rs35881187	CCT	C	8834.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	981087	rs3128098	A	G	17804.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:3,683:1.00:686
chr1	981931	rs2465128	A	G	29030.77	.	AC=2;AF=1.00;AN=2;DB;DP=1161;set=Intersection	GT:AD:AF:DP	1/1:2,1128:1.00:1130
chr1	982941	rs3128102	T	C	15887.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr1	982994	rs10267	T	C	17283.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,646:1.00:646
chr1	984147	rs199866572	CAAAAAAAAAAA	C	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	984171	rs140904842	CAG	C	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	984302	rs9442391	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	984494	rs60881902	GC	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=30.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	985266	rs2275813	C	T	10000.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.648;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.397;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-0.646;SOR=0.513;set=HC	GT:AD:AF:DP	1/1:1,386:1.00:387
chr1	985446	rs2275812	G	T	2006.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=1.489;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:4,75:0.95:79
chr1	985449	rs2799067	G	A	2007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=1.623;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:4,75:0.95:79
chr1	986443	rs2710887	C	T	19651.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr1	987200	rs9803031	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr1	988932	rs2710871	G	C	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	990280	rs4275402	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	990517	rs2710872	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1007203	rs4633229	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	1007432	rs4333796	G	A	7758.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-0.908;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:1,298:1.00:299
chr1	1018144	rs9442395	T	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	1019175	rs2298215	C	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1019180	rs9442396	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.65;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1021315	rs201998414	A	C	3754.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:111,182:0.62:293
chr1	1021415	rs3737728	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	1026707	rs4074137	C	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	1026801	rs4562563	T	A	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	1118212	rs10907171	T	C	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:158,72:0.31:230
chr1	1158631	rs6603781	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr1	1192773	.	ACC	A	214.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.79;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1196863	rs6659787	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	1225517	.	T	C	606	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=21;MQ=47.53;NF=28;NR=13;PP=606;QD=15.6285661597;SC=CCCCCGTGTCTCTGCTCCGTC;SbPval=0.65;Source=Platypus;TC=73;TCF=48;TCR=25;TR=41;WE=1225536;WS=1225502;set=Platypus	GT:AD:AF:DP	1/0:32,41:0.56:73
chr1	1229111	.	A	ACGCCCCTGCCCTGGAGGCCC	2249.73	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	1229680	rs2477781	G	T	10341.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr1	1231001	rs74810910	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr1	1239339	rs11260584	T	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	1242707	rs2274262	A	G	16431.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,633:1.00:633
chr1	1245368	rs11590283	G	A	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	1246004	rs2296474	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	1247494	rs12103	T	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	1247553	.	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-1.672;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	1247578	.	T	TGGG	64.25	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1249187	rs12142199	G	A	12966.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	1254136	rs4970432	G	A	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	1254436	rs1886773	A	G	23145.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.09;ReadPosRankSum=0.402;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:1,524:1.00:525
chr1	1254443	rs1886772	G	A	23367.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.84;ReadPosRankSum=-0.832;SOR=0.678;set=HC	GT:AD:AF:DP	1/1:1,532:1.00:533
chr1	1254841	rs10907179	C	G	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	1260168	rs61766199	C	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	1262591	rs2296472	C	T	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	1262966	rs307349	C	T	16132.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:1,614:1.00:615
chr1	1263144	rs307350	G	A	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr1	1268847	rs307378	T	G	21531.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr1	1269554	rs307377	T	C	10487.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	1273116	rs307371	A	G	13292.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr1	1273278	rs307370	A	G	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	5215.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=56.804;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-1.462;QD=18.69;ReadPosRankSum=11.562;SOR=1.990;set=HC	GT:AD:AF:DP	1/1:116,163:0.58:279
chr1	1275291	.	G	A	2368	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=6;HapScore=1;MGOF=27;MMLQ=26;MQ=58.98;NF=32;NR=105;PP=2368;QD=17.538476004;SC=AGCAGCCCCCGCAGACCCACC;SbPval=0.67;Source=Platypus;TC=170;TCF=44;TCR=126;TR=137;WE=1275299;WS=1275281;set=Platypus	GT:AD:AF:DP	1/0:33,137:0.81:170
chr1	1275329	.	TA	CG	1373	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=4;HapScore=2;MGOF=41;MMLQ=24;MQ=58.92;NF=3;NR=26;PP=1373;QD=49.188547409;SC=CAGCAGCCCCTACAGACCCAC;SbPval=1.0;Source=Platypus;TC=79;TCF=27;TCR=52;TR=29;WE=1275338;WS=1275319;set=Platypus	GT:AD:AF:DP	1/0:50,29:0.37:79
chr1	1276973	rs145370195	G	GACAC	27700.73	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr1	1277533	rs307362	T	C	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	1278237	rs307361	T	C	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	1284490	rs150789461	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr1	1288471	rs3766183	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1288583	rs3845295	C	G	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:4,261:0.98:265
chr1	1288823	rs2296471	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	1289367	rs140777846	CTG	C	10299.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=-11.474;QD=25.69;ReadPosRankSum=-0.376;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:2,399:1.00:401
chr1	1289911	rs4970365	G	A	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	1291159	rs201260508	GA	G	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=34.31;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1293764	rs34841888	G	C	9410.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	1296691	rs2765025	C	G	8768.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	1310074	rs2765035	C	G	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	1323078	rs12729599	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr1	1323143	rs35654872	CCT	C	4488.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	1323945	rs111530797	GTC	G	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.320;QD=19.58;ReadPosRankSum=-1.317;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr1	1323963	rs113604022	C	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.144;QD=6.86;ReadPosRankSum=2.782;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	1333713	rs138406527	T	C	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr1	1387667	rs1781144	C	G	23573.77	.	AC=2;AF=1.00;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	1/1:1,901:1.00:902
chr1	1418531	rs819973	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=24.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1421022	rs112314200	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	1454207	rs114928482	C	T	24426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=1708;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=2.040;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:529,1140:0.68:1669
chr1	1458073	rs3118507	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	1460793	.	C	CTT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=8.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.685;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr1	1469546	rs3128344	G	A	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr1	1551927	rs7418389	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:48,130:0.73:178
chr1	1558792	rs12755088	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=24.86;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	1560103	rs28635343	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr1	1562437	rs28510084	C	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.412;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:130,64:0.33:194
chr1	1562536	rs11544452	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.733;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr1	1564712	rs61774907	G	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=2.000;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	1566065	rs139398711	A	AG	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.499;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr1	1566068	rs28730454	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr1	1571640	rs377058079	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.46;MQRankSum=-0.549;QD=13.81;ReadPosRankSum=0.841;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	1574019	rs9442412	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.84;MQRankSum=0.144;QD=9.93;ReadPosRankSum=-0.083;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr1	1575616	rs80012316	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1575836	rs72468213	C	G	1619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.661;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=4.496;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-4.612;QD=4.67;ReadPosRankSum=1.361;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:237,110:0.32:347
chr1	1580738	rs149767621	T	A	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-6.713;QD=8.66;ReadPosRankSum=2.219;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:173,166:0.49:339
chr1	1581558	rs117719933	C	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.36;QD=29.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	1581586	rs61774914	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.36;QD=27.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1581713	rs76922129	A	C,G	1374.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	0/1:0.70:89
chr1	1581759	rs61774915	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:281,93:0.25:374
chr1	1581926	rs61774917	G	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:87,61:0.41:148
chr1	1581958	rs200481124	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.77;MQRankSum=-2.468;QD=0.60;ReadPosRankSum=-0.291;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:60,10:0.14:70
chr1	1582106	rs79942991	T	C	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	1582202	rs61774918	C	T	3859.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:276,205:0.43:481
chr1	1582794	rs4648754	C	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1582841	rs61774920	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=-0.482;QD=17.15;ReadPosRankSum=0.386;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	1582844	rs61774921	G	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=-0.482;QD=17.15;ReadPosRankSum=0.462;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	1582880	rs61774922	G	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=45.05;MQRankSum=-1.101;QD=8.57;ReadPosRankSum=0.729;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	1582961	rs61774949	G	C	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:161,169:0.51:330
chr1	1583003	rs72468214	C	T	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:196,168:0.46:364
chr1	1583495	rs61774952	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.524;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=14.807;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-10.868;QD=0.22;ReadPosRankSum=1.050;SOR=2.267;set=HC	GT:AD:AF:DP	0/1:167,21:0.11:188
chr1	1585597	rs7531938	A	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	1585642	rs3936009	G	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	1586752	rs11486023	T	C	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr1	1588670	rs61774958	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr1	1588717	rs61774959	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:79,21:0.21:100
chr1	1588737	rs61776760	C	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.614;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=-0.360;QD=4.66;ReadPosRankSum=0.263;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr1	1588743	rs61776761	A	T	550.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-0.148;QD=4.30;ReadPosRankSum=-0.167;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:106,22:0.17:128
chr1	1588744	rs79724854	AGCG	A	526.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=53.63;MQRankSum=-0.089;QD=3.87;ReadPosRankSum=-0.297;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr1	1599812	rs12729295	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.486;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=40.251;MLEAC=1;MLEAF=0.500;MQ=44.24;MQRankSum=-5.082;QD=5.61;ReadPosRankSum=-2.281;SOR=5.604;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	1599888	rs2072923	A	G	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:150,121:0.45:271
chr1	1599940	rs61776767	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:158,67:0.30:225
chr1	1599974	rs113499489	A	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:149,58:0.28:207
chr1	1602787	rs4639697	G	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	1608229	rs143080014	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-1.899;QD=10.16;ReadPosRankSum=-0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	1635004	rs874516	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr1	1635619	rs2076329	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr1	1635749	rs55880629	C	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr1	1636044	rs1059822	G	A	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:196,203:0.51:399
chr1	1636274	rs2179381	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr1	1639046	rs138369165	C	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.836;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=25.182;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-5.873;QD=2.70;ReadPosRankSum=-3.016;SOR=4.671;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr1	1639062	rs149613000	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.131;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=16.883;MLEAC=1;MLEAF=0.500;MQ=47.20;MQRankSum=-5.252;QD=1.33;ReadPosRankSum=-1.908;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chr1	1639801	rs74378830	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-5.211;QD=4.29;ReadPosRankSum=1.480;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	1644836	rs2179382	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-0.679;QD=0.82;ReadPosRankSum=-0.498;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:84,15:0.15:99
chr1	1644908	rs2179383	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	1645050	rs77869096	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.68;QD=24.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	1645838	rs33938712	CA	C	1365.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=35.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1646113	rs199941510	G	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1646231	rs200994957	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.86;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1646236	rs202149796	C	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.86;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1647722	rs114460890	G	T	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=0.550;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr1	1647725	rs368680882	GT	AG	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.067;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.05;ReadPosRankSum=-0.304;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:56,51:0.48:107
chr1	1647729	.	CA	TG	2586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=7.093;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.38;ReadPosRankSum=0.008;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:63,58:0.48:121
chr1	1647745	rs72634830	G	A	3902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=-1.003;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:86,99:0.54:185
chr1	1647753	rs74045984	C	T	4284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.784;QD=18.88;ReadPosRankSum=1.474;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:116,111:0.49:227
chr1	1647778	rs72901773	C	G	5097.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:178,158:0.47:336
chr1	1647814	rs72901775	T	C	3933.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:370,278:0.43:648
chr1	1647871	rs72909014	T	C	8353.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:451,434:0.49:885
chr1	1647893	rs144636354	C	CTTTCTT	12534.73	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:376,329:0.47:705
chr1	1647968	rs146207119	C	CAT	3185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=9.858;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-3.120;QD=15.93;ReadPosRankSum=-0.009;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:115,85:0.42:200
chr1	1647971	rs77394327	G	A	3194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=7.572;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-3.085;QD=16.38;ReadPosRankSum=-0.727;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:111,84:0.43:195
chr1	1647983	rs74429813	T	A	2691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-3.023;QD=18.07;ReadPosRankSum=-1.568;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:83,66:0.44:149
chr1	1647990	rs76519969	C	T	1872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=5.070;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-3.502;QD=15.23;ReadPosRankSum=1.101;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:77,46:0.37:123
chr1	1648002	rs77107184	C	T	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=14.517;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.782;QD=10.93;ReadPosRankSum=3.667;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr1	1648018	rs79409185	C	T	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.151;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=12.502;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-3.306;QD=15.81;ReadPosRankSum=2.652;SOR=2.595;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr1	1648027	rs61776857	T	C	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	1650657	.	C	G	153	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=25;MQ=59.08;NF=8;NR=4;PP=153;QD=15.6476010456;SC=CTTTCAGCTACAGTTTGCTTT;SbPval=0.62;Source=Platypus;TC=32;TCF=21;TCR=11;TR=12;WE=1650665;WS=1650655;set=Platypus	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	1650787	rs1137003	T	C	6892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=2.976;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:215,179:0.45:394
chr1	1650797	rs1059830	A	G	7775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=2.175;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:226,194:0.46:420
chr1	1650801	rs1137004	T	C	7793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=0.625;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:224,210:0.48:434
chr1	1650807	rs1137005	T	C	7430.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:217,226:0.51:443
chr1	1650832	rs72909030	A	G	8320.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:252,253:0.50:505
chr1	1650845	rs1059831	G	A	5288.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:262,259:0.50:521
chr1	1650920	rs36191908	G	A	7838.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:305,227:0.43:532
chr1	1650938	.	CGG	C	7349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.681;QD=15.54;ReadPosRankSum=-2.092;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:278,195:0.41:473
chr1	1650942	.	A	AAG	7018.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DP=467;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.720;QD=15.13;ReadPosRankSum=-1.580;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:277,187:0.40:464
chr1	1650960	rs72634834	G	A	5510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=4.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.068;QD=13.99;ReadPosRankSum=-1.327;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:249,145:0.37:394
chr1	1650967	rs75384210	T	C	4835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.095;QD=13.21;ReadPosRankSum=-0.078;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:239,127:0.35:366
chr1	1650996	rs74223875	T	C	2766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.276;QD=11.72;ReadPosRankSum=-0.284;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:153,83:0.35:236
chr1	1651003	rs76941027	G	A	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.304;QD=13.64;ReadPosRankSum=-1.073;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:120,68:0.36:188
chr1	1651047	.	C	T	1370	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=25;MQ=59.38;NF=4;NR=13;PP=1370;QD=82.6336007381;SC=TCTCCAACTTCAGGCATCTTT;SbPval=0.69;Source=Platypus;TC=60;TCF=16;TCR=44;TR=17;WE=1651089;WS=1651037;set=Platypus	GT:AD:AF:DP	0/1:43,17:0.28:60
chr1	1651077	rs70937183	CGG	CTCGCTCTGTCACCCAGGCTGG,C	1301.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/1:1.00:27
chr1	1653004	rs36039898	T	C	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	1653028	rs16825265	C	T	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	1654013	rs74045997	C	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1654038	rs61777494	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1654058	rs61777495	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.24;QD=44.39;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	1654064	rs200615789	A	T	2291.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.56;QD=44.94;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	1654065	rs35174499	AGCG	A	2282.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	1663696	.	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=-0.564;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	1663831	rs3817856	C	T	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	1664019	rs2294488	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1666175	rs61777509	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=24.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	1666338	rs2072924	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.53;QD=42.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1666342	rs76084492	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.53;QD=42.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1669734	rs80140081	G	T	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=25.95;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	1670570	rs150051592	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=14.771;MLEAC=1;MLEAF=0.500;MQ=50.40;MQRankSum=-2.823;QD=13.58;ReadPosRankSum=-1.803;SOR=3.897;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	1684347	.	CCCT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=4.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.08;ReadPosRankSum=2.650;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:367,29:0.07:396
chr1	1685213	rs2072928	C	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	1686040	rs4751	G	T	20608.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:1,783:1.00:784
chr1	1686943	rs2072929	T	C	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	1686962	rs2076327	C	T	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	1687625	rs34306661	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1688192	rs2281173	A	G	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr1	1688469	rs4648623	C	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1688513	rs4648624	G	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1689762	rs2235537	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1690126	rs79655042	A	AAC	1552.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1696659	rs5021859	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	1724503	rs33952351	C	CA	74.50	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:2,6:0.75:8
chr1	1823524	rs3806168	G	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr1	1823922	rs6688000	A	G	20430.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-1.606;SOR=0.501;set=HC	GT:AD:AF:DP	1/1:3,808:1.00:811
chr1	1846582	rs2748987	A	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr1	1850428	rs2295363	A	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=2.047;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:98,49:0.33:147
chr1	1853615	rs113294876	T	TCTGA	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	1854321	rs2250833	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr1	1855450	rs28423370	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	1856098	rs752965	C	T	447.03	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	1859131	rs4648734	C	T	7073.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:187,337:0.64:524
chr1	1870210	rs2803323	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr1	1873625	rs12758705	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:40,97:0.71:137
chr1	1886500	.	GCGGCTC	G	474.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=6.884;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.144;QD=18.99;ReadPosRankSum=0.060;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	1886507	.	ACACCGGAAGTGC	A	466.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=9.436;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.300;QD=16.67;ReadPosRankSum=-0.425;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr1	1886519	.	C	A	205	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=2;MGOF=12;MMLQ=26;MQ=60.54;NF=11;NR=3;PP=205;QD=17.1265151819;SC=ACCGGAAGTGCGGCTCACACA;SbPval=0.83;Source=Platypus;TC=23;TCF=16;TCR=7;TR=14;WE=1886527;WS=1886509;set=Platypus	GT:AD:AF:DP	1/0:9,14:0.61:23
chr1	1886859	rs3795290	C	T	4851.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:131,226:0.63:357
chr1	1887019	rs28548017	A	G	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:121,246:0.67:367
chr1	1887091	rs139735565	CG	C	9440.73	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:121,276:0.70:397
chr1	1887111	rs3838975	GC	G	6140.73	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:149,289:0.66:438
chr1	1887245	rs28575980	G	A	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:95,176:0.65:271
chr1	1888193	rs3820011	C	A	5453.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:143,256:0.64:399
chr1	1888330	rs28535696	C	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr1	1895177	rs7523728	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr1	1896440	rs16824585	G	A	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:123,167:0.58:290
chr1	1896553	rs28625839	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:36,86:0.70:122
chr1	1897753	rs4648600	C	G	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:46,171:0.79:217
chr1	1900024	rs56985589	TG	T	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	1900106	rs145742571	T	TCTC	1483.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr1	1900186	rs35269416	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:119,47:0.28:166
chr1	1900232	rs16824588	T	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr1	1900332	rs55709963	A	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-1.190;QD=19.53;ReadPosRankSum=-2.749;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	1900339	rs56126097	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-1.432;QD=19.31;ReadPosRankSum=-1.253;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	1903357	rs13303329	G	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr1	1905790	rs16824603	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	1916890	rs3795280	C	T	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:88,188:0.68:276
chr1	1918488	rs4350140	A	G	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	1918535	rs4535948	A	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:74,145:0.66:219
chr1	1918584	rs4603072	C	T	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:29,84:0.74:113
chr1	1918595	rs4466593	G	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:23,69:0.75:92
chr1	1922303	rs13303195	C	T	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	1956362	rs2376805	G	A	18418.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,723:1.00:723
chr1	1957037	rs2229110	T	C	25839.77	.	AC=2;AF=1.00;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	1/1:2,1007:1.00:1009
chr1	1957219	rs3831907	CG	C	1941.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr1	1959612	.	A	G	2803.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:53,132:0.71:185
chr1	1960926	rs28581504	T	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	1987803	rs2803309	G	A	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1987993	rs12184	T	C	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	1991014	rs1878745	A	G	10110.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	1991123	rs1878746	G	A	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr1	1991173	rs2247923	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	2005531	.	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=2.435;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	2005740	rs2459986	T	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	2075560	rs427811	T	G	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.82;ReadPosRankSum=-1.079;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:16,35:0.69:51
chr1	2075570	rs377283	T	C	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.093;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:19,40:0.68:59
chr1	2077409	rs385039	A	G	5410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.696;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:110,258:0.70:368
chr1	2082458	rs262670	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	2082489	rs262669	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	2106840	rs12135175	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	2106896	rs12135178	T	C	1056.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.42;ReadPosRankSum=-0.350;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr1	2113565	rs262688	T	G	4966.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:114,222:0.66:336
chr1	2114271	rs74912021	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr1	2118539	rs2503699	T	C	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:45,92:0.67:137
chr1	2121118	rs2503701	C	T	4836.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:68,215:0.76:283
chr1	2125942	rs71511332	C	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	2126139	rs6662296	C	G	148.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	2144788	rs262695	A	G	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:349,156:0.31:505
chr1	2144982	rs2480714	G	T	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	2235662	rs2645073	G	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:35,98:0.74:133
chr1	2286947	rs1039100	A	G	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.181;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,115:0.77:149
chr1	2318871	rs113863949	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:59,161:0.73:220
chr1	2323041	rs77804600	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.030;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	2328714	rs2645081	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.237;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	2332391	rs12037485	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:139,66:0.32:205
chr1	2338126	rs3795269	C	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:225,135:0.38:360
chr1	2340200	rs2494598	T	C	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-1.276;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:333,147:0.31:480
chr1	2399119	rs2494632	A	G	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.74;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	2399149	rs2494631	A	G	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	2409892	rs12727342	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	2411451	rs10797428	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	2418935	rs10910082	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	2420590	rs10752744	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	2420913	rs6668720	A	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	2422614	rs2477699	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr1	2426766	rs3001347	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.205;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=7.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.288;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	2428874	rs2477706	T	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.900;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr1	2430617	rs2296442	C	T	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.215;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:359,119:0.25:478
chr1	2433900	rs12736998	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:91,39:0.30:130
chr1	2444414	rs7535528	G	A	3111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.092;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:492,201:0.29:693
chr1	2452569	rs2985862	T	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.471;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr1	2487663	rs2227312	C	A	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:108,171:0.61:279
chr1	2487766	rs2227313	T	C	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:117,238:0.67:355
chr1	2488153	rs4870	A	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr1	2490898	rs2257763	C	A	7148.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:151,327:0.68:478
chr1	2490942	rs2281852	C	A	7557.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:156,347:0.69:503
chr1	2491205	rs2234161	C	T	10703.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:178,472:0.73:650
chr1	2494330	rs2234167	G	A	8359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-0.394;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:157,395:0.72:552
chr1	2494785	rs8725	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr1	2518186	rs10752746	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	2525378	rs183805733	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:42,119:0.74:161
chr1	2527678	rs2260976	A	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	2528133	rs2843401	T	C	13949.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr1	2530341	rs34705971	A	AG	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	2560735	rs4648657	A	G	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	2560882	rs4648658	G	A	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.12;SOR=1.243;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	2560903	rs4648659	T	G	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	2573199	rs4648662	A	G	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	2700117	rs4648502	C	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.037;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:89,23:0.21:112
chr1	2983963	rs2297828	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:251,129:0.34:380
chr1	2984087	rs2297829	C	A	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:127,271:0.68:398
chr1	2985885	rs7413494	C	G	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-0.381;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	3301721	rs2282198	C	T	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:48,126:0.72:174
chr1	3310928	rs145881072	C	CCG	538.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	3311101	rs10909936	C	G	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=1.216;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:70,51:0.42:121
chr1	3311212	rs2493253	C	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	3311261	rs6702992	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	3311270	rs2493251	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	3312914	rs871822	T	G	4633.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:90,215:0.70:305
chr1	3328358	rs870124	T	C	39539.77	.	AC=2;AF=1.00;AN=2;DB;DP=1536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1510:1.00:1510
chr1	3342109	rs41303861	G	T	4803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.282;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:109,217:0.67:326
chr1	3350173	.	T	C	1243	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=1;MGOF=6;MMLQ=21;MQ=59.49;NF=64;NR=22;PP=1243;QD=14.8578047971;SC=CCTGCCTGTCTGGGATGGCCC;SbPval=0.68;Source=Platypus;TC=127;TCF=91;TCR=36;TR=86;WE=3350181;WS=3350163;set=Platypus	GT:AD:AF:DP	1/0:41,86:0.68:127
chr1	3383593	rs3893316	G	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	3383665	rs7550948	G	A	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	3383898	rs6424078	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	3385250	rs1417897	C	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	3385256	rs1891143	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	3385330	rs2493249	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	3388183	rs61759241	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	3389727	rs2185639	C	T	15325.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:1,604:1.00:605
chr1	3390238	rs2493323	T	A	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	3394456	rs4638054	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	3394640	rs4422946	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	3394674	rs4534324	T	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	3395039	rs10797395	G	A	13389.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	3395229	rs4553117	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	3395973	rs70938094	ACC	A	10855.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	3396609	rs881978	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3397188	rs2487677	T	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	3413868	rs4648506	C	G	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:30,95:0.76:125
chr1	3414105	rs10909951	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.008;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:127,38:0.23:165
chr1	3416449	rs7553399	C	A	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	3417131	rs2821031	A	G	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	3417960	rs4648507	G	A	7258.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	3418391	rs4648508	C	T	9266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-0.772;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:173,440:0.72:613
chr1	3418565	.	T	C	1558	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=3;HapScore=1;MGOF=40;MMLQ=24;MQ=56.3;NF=36;NR=67;PP=1558;QD=15.4637981801;SC=GGGCTCCTGGTGAGTGTGCCC;SbPval=0.49;Source=Platypus;TC=105;TCF=36;TCR=69;TR=103;WE=3418573;WS=3418555;set=Platypus	GT:AD:AF:DP	1/1:2,103:0.98:105
chr1	3440647	rs2794322	T	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	3440824	rs10797399	G	A	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:76,149:0.66:225
chr1	3496328	rs2821051	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	3496479	rs2794340	T	C	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	3512188	rs7554061	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr1	3519179	rs2794330	C	T	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	3527944	rs10797402	C	G	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	3528082	rs10797403	T	C	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	3542106	rs3838971	T	TG	4917.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.201;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.183;QD=30.17;ReadPosRankSum=-0.861;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:1,162:0.99:163
chr1	3544235	rs5772111	TA	T	7032.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	3548136	rs2760321	T	C	8138.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	3549852	rs2273954	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	3549862	.	G	GT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=2.040;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	3551739	rs115982402	C	T	5076.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:139,239:0.63:378
chr1	3555428	rs3818330	G	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	3566706	rs2251098	G	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	3607520	rs3765730	G	A	1627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.286;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:249,107:0.30:356
chr1	3638674	rs1801174	C	T	30975.77	.	AC=2;AF=1.00;AN=2;DB;DP=1192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.25;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,1180:1.00:1180
chr1	3640085	rs6424091	C	G	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	3640134	rs35939665	TCTGC	T	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	3644085	rs10910017	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.448;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	3644349	rs2181486	A	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	3644374	rs2146657	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	3645835	rs2254530	C	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.961;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	3645844	rs2096224	G	A	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	3646137	rs11589885	C	T	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,344:1.00:345
chr1	3646192	rs1885867	G	A	14874.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr1	3646214	rs1885866	T	C	14539.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:3,341:0.99:344
chr1	3646291	rs1885865	G	A	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	3647962	rs1745813	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	3703337	rs2368537	G	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	3743433	rs5772126	T	TG	2083.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	3746583	rs2275828	G	T	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	3746589	rs2275826	C	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.02;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	3747580	rs6424058	C	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	3747603	rs6413779	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	3753136	rs2275824	A	T	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	3755675	rs1891941	T	C	16576.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,628:1.00:628
chr1	3756120	rs1539649	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	3759784	rs10797347	A	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	3761479	rs2275822	C	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	3761650	rs2275821	A	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	3765095	.	C	CAAAAA	443.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=40.34;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	3775454	rs4376673	C	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.305;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	3782608	rs10909809	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	3784454	rs76754622	T	C	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	3784464	rs72848469	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.56;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	3786189	rs1141070	G	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	3788968	rs111645751	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=31.31;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	3788978	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.618;QD=1.09;ReadPosRankSum=2.086;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	3789178	.	GGGCCCTGTCCCTGCCGT	G,GGGCCCTGTCCCTGCCGCGGCCCTGTCCCTGCCGT	1976	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=19;MQ=64.18;NF=2,3;NR=38,38;PP=222,1976;QD=7.27552744318;SC=AGTGCCTGCAGGGCCCTGTCC;SbPval=0.39;Source=Platypus;TC=59;TCF=2;TCR=57;TR=40,41;WE=3789203;WS=3789168;set=Platypus	GT:AF:DP	0/1:0.68:59
chr1	3789194	.	G	GCGGCCC	4031.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.78;MQRankSum=2.345;QD=37.68;ReadPosRankSum=-1.781;SOR=1.587;set=HC	GT:AD:AF:DP	1/1:2,105:0.98:107
chr1	3789195	.	T	C	1730	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=1;MGOF=28;MMLQ=22;MQ=65.34;NF=13;NR=33;PP=1730;QD=38.3645915771;SC=GTCCCTGCCGTGGCCCTGTCC;SbPval=0.59;Source=Platypus;TC=48;TCF=14;TCR=34;TR=46;WE=3789203;WS=3789168;set=Platypus	GT:AD:AF:DP	0/1:2,46:0.96:48
chr1	3789195	.	T	TGTCCCTGCCGC	4031.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.80;MQRankSum=2.316;QD=38.40;ReadPosRankSum=-1.793;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:2,103:0.98:105
chr1	3800242	rs3205087	A	G	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,331:0.99:333
chr1	3806643	rs4520357	T	A	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	3807122	rs7513321	G	A	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	3807388	rs4131373	G	A	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	3807593	rs4274008	G	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	3809326	rs72849326	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	3816587	rs35704040	GC	G	3014.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	3816598	rs112821673	A	C	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=45.22;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	3816604	rs112886428	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.35;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	3816683	rs113529609	A	G	8223.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	3816892	.	TC	T	607.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.52;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	3816908	rs12095854	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.30;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	3816910	rs12095856	C	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	4772717	rs242056	G	A	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	4847594	rs11805709	C	T	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	4847845	rs4654460	G	A	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	5623965	rs9439613	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	5934490	rs868163	A	G	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	5934740	rs115239596	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	5934837	rs1287638	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	5935162	rs1287637	A	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	5937391	rs3747989	C	T	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	5939544	rs11121915	T	G	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	5948677	rs2282281	G	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	5964991	rs3737234	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	5967166	rs114900019	G	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	5967383	rs6689321	G	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	6027167	rs875574	C	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	6029086	rs34702999	CA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.306;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	6038283	rs115690090	A	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	6038583	rs4908639	G	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	6142329	rs2229004	C	T	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:5,254:0.98:259
chr1	6142341	rs143758613	GTCTTT	G	9963.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr1	6147407	rs4908763	C	T	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	6150637	rs12081978	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	6155332	rs1555144	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	6157282	rs749434	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	6157434	rs2311802	C	T	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	6158562	rs2229002	A	G	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	6162054	rs6696489	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6186961	rs2746060	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	6204222	rs17489787	C	G	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	6204266	rs9435102	A	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	6206749	rs61740827	A	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	6209363	rs12565328	T	C	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	6210970	rs12564469	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	6211183	rs9434711	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr1	6219685	rs75863307	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	6239937	rs70981314	C	CG	5290.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=37.00;SOR=1.260;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	6240113	.	G	GC	2953.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=2.309;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr1	6246929	rs114462621	A	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	6247066	rs4908863	C	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	6253197	rs115515694	C	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	6253295	rs2311385	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	6257856	rs2294713	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	6257986	rs11800316	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6272137	rs709208	A	G	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:8,196:0.96:204
chr1	6278414	rs709209	A	G	9605.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr1	6291918	.	TA	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.170;QD=1.65;ReadPosRankSum=0.054;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr1	6304580	rs111849439	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	6305112	.	T	TC	307.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6305201	rs188463518	A	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6305557	rs74925124	A	G	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	6310704	.	T	A	294.77	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	6311299	.	ACCT	A	3911.73	.	AC=2;AF=1.00;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	6311312	.	C	G	4853.77	.	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=39.14;SOR=2.500;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	6314743	rs74626631	C	T	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr1	6354955	rs1804843	G	A	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	6393445	rs2235693	A	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	6399711	rs2235692	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr1	6453520	rs76483502	C	CG	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	6473294	rs7529205	A	G	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	6479040	rs2235687	G	A	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	6479938	rs12074131	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	6490016	rs12075883	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	6500919	rs3817918	T	C	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	6501044	rs2311045	C	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	6504823	rs6664393	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	6505671	rs11121879	G	A	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	6525915	rs1536593	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6529182	.	TTCCTCCTCC	TTCC,T	3957.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=154;set=Intersection	GT:AF:DP	1/1:0.98:94
chr1	6531010	rs181693536	C	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	6545390	rs75490131	A	T	2748.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=-2.298;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:2,110:0.98:112
chr1	6557009	rs3007430	A	C	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	6579607	rs1556035	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	6585804	rs13513	C	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6586070	rs7548042	C	T	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	6591937	rs932112	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	6609559	rs11122091	C	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	6609851	rs10864622	A	G	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	6609896	rs11579888	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	6610366	rs2063805	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6610382	rs2063806	C	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	6614391	rs6693391	A	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	6614396	.	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	6614415	rs6693400	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	6614535	rs4908923	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	6614653	rs4908924	C	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	6615690	rs925745	A	G	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.98;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	6615695	rs925744	C	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	6634819	rs79902724	C	G	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	6635231	rs10864628	A	G	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	6646959	rs3833475	GCCTGCCTTC	G	11843.73	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	6674220	rs146479384	C	G	10725.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	6681744	rs3747994	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	6685442	rs12746591	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	6688863	rs143046886	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	6690140	rs742394	A	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6692273	rs34491693	C	CA	188.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	6694927	rs2294532	C	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	6695802	rs6577583	A	G	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	6697422	rs146590118	A	C	13107.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	6704635	rs200458	A	G	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	6713114	rs2235564	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6946224	rs112281607	AC	A	2985.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	6947717	rs3810982	C	T	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	6947973	rs3827726	C	T	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	7202190	rs970973	T	C	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	7289606	rs6659573	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	7289612	rs6659575	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	7289619	rs6577423	G	A	245.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=35.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	7527824	rs72642857	C	T	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	7700352	rs4072987	GG	CA	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	7700674	rs12743421	C	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	7737799	rs3011926	A	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	7807966	rs34083763	GT	G	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-2.265;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr1	7826393	rs7515025	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	7826668	rs201449858	TAC	T	2197.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr1	7831352	rs72853889	C	T	10772.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	7831547	rs185923261	C	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	7845695	rs228729	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	7861153	rs34433622	C	CT	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=27.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	7863293	rs228642	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	7869915	rs228668	G	C	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	7870048	rs228669	T	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	7870144	rs228670	A	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	7880469	rs228691	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	7887493	rs228696	T	C	18447.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr1	7890064	rs12023156	A	G	21168.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	1/1:1,836:1.00:837
chr1	7906476	rs172932	G	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	7906914	rs10864317	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	7913184	rs34962249	CA	C	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=1.587;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr1	7913430	rs228648	G	A	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	7998963	rs226476	T	G	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	8029509	rs2640906	GG	AA	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	8384268	rs6702047	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	8390246	rs12565834	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	8390495	rs1058619	A	G	8318.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,321:1.00:322
chr1	8415418	rs2289733	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	8418219	rs75051448	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	8418644	rs11121172	C	A	9572.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	8418650	rs1058766	T	C	9575.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	8420672	rs112375285	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	8421203	rs13596	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	8421966	rs74568545	C	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	8422676	rs2252865	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	8424039	rs9628991	C	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	8424984	rs34269918	GA	G	1354.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	8425798	rs3765972	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	8425900	rs3753275	T	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	8525791	rs74049668	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	8526142	rs4908760	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	8557691	rs7530745	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	8568663	rs11804094	G	A	7456.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=0.039;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:2,293:0.99:295
chr1	8923281	rs7523767	C	T	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	8926752	rs2781065	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	8935149	rs2038904	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	8938574	rs29000586	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	9011586	rs3765968	T	G	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	9011722	rs3765966	G	T	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	9018931	rs12061974	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	9034815	rs35753212	C	CAGA	5406.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	9084924	rs2027222	T	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	9098742	rs11121306	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	9165868	rs1705303	A	G	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	9189324	.	G	GTACCCCGGCCTTTAAGCCCCGCCTACATTCCCCGCCCCGCCCCGCCGTCCCGGGCCCTGAGCCCCGCCCACGCGCCGCACCCCGCCCCTC	709.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	9323463	rs141143158	C	CTGAGGCAG	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	9323910	rs6688832	G	A	10894.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr1	9324670	rs9434743	A	G	11591.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr1	9324716	rs144508545	C	T	10807.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	9613871	rs6664362	C	T	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	9613908	rs6664376	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	9627521	rs6698575	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	9633387	.	GT	G	669.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.778;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=2.105;SOR=0.579;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr1	9648918	.	GCCCGCCTA	G	2700.73	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.97;QD=35.54;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	9649170	.	G	T	153.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	9655965	rs80180768	C	T	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	9661351	rs7542415	C	A	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,396:0.99:398
chr1	9670483	rs4244632	T	A	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	9671257	rs70979767	CT	C	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.698;QD=9.62;ReadPosRankSum=-0.125;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:20,65:0.76:85
chr1	9714247	rs9430611	A	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr1	9714538	rs150187930	GT	GGAT,G	2060.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/1:1.00:47
chr1	9714539	rs56017286	T	G	2070.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	9714540	.	G	GAGGCCAGACC	2965	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=3;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=5;PP=2965;QD=20;SC=CAATGGTTGTGCGAAAGCCAG;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=9714552;WS=9714528;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	9714541	rs56235370	C	CCA	1089.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.249;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=-1.274;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr1	9714542	.	GAA	CAG	248	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=3;HapScore=3;MGOF=3;MMLQ=28;MQ=60.0;NF=0;NR=5;PP=248;QD=60.2935749724;SC=ATGGTTGTGCGAAAGCCAGCC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5;WE=9714552;WS=9714528;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr1	9714543	rs55851927	A	ACCCC	1089.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.930;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.45;ReadPosRankSum=-1.211;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr1	9714544	rs55746245	A	AG	1758.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=58.62;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	9779871	rs9430220	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	9792105	rs377673198	G	GA	337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=1.562;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	9816620	rs6680090	T	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	10041298	.	AT	A	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.679;QD=1.76;ReadPosRankSum=-0.487;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:76,35:0.32:111
chr1	10068111	rs372996268	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.938;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	10132493	rs34652791	C	CT	210	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.123;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	10190773	rs17034499	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	10190884	rs2295294	A	T	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	10218377	rs2273298	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	10218439	rs2273299	T	C	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	10287820	rs141221242	C	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=22.75;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	10334924	rs17396973	C	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	10335315	rs6685773	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	10342352	rs3748575	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	10342629	rs3748576	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	10357206	rs199617049	AT	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.084;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	10363511	rs75760005	G	A	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	10385047	rs78963948	A	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	10408837	.	AT	A	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.529;QD=1.60;ReadPosRankSum=-1.337;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	10425117	rs34161257	AT	A	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	10434282	rs79992337	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr1	10436434	rs76771400	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	10459271	rs182272631	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	10459299	rs113966481	C	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	10468005	.	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.606;QD=0.94;ReadPosRankSum=-0.115;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:78,27:0.26:105
chr1	10479055	rs5772408	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.131;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr1	10479635	rs2298570	C	G	15115.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr1	10490285	rs649639	T	C	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	10490759	rs143754643	TTGGCTTAAC	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	10502307	rs33919161	AT	A	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	10511589	rs666103	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	10521629	rs75956311	G	A	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	10523696	rs148199800	C	T	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr1	10534837	rs115474604	C	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	10596388	rs2480779	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	10678488	rs284238	A	T	8236.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	10678610	rs284237	G	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	10683166	rs74052157	G	A	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr1	10719649	rs74052160	G	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	10754056	rs74052166	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	11008497	rs1281017	G	C	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	11008695	rs17036032	T	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	11014118	rs45537241	C	T	13702.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:2,538:1.00:540
chr1	11015165	rs75130475	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	11015325	rs41274492	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	11017022	rs149410406	C	CAG	1930.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	11017609	rs7511959	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	11017617	rs34691090	G	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.11;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	11017634	rs35950437	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	11018723	rs60676743	A	G	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	11024353	rs6659231	A	G	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	11024381	rs6659326	A	G	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	11042201	rs56848003	C	CAG	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.53;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	11042242	rs11121670	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	11080723	rs143130606	T	TG	1944.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	11086091	rs77193093	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	11087835	rs1782454	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	11090374	rs142152804	AC	A	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr1	11094757	.	G	GAAA	667.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.03;ReadPosRankSum=0.581;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	11095039	rs6695096	C	T	71.94	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.39;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	11103408	rs7536030	G	A	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	11104845	rs9430347	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	11104851	rs113535747	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.69;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	11105122	rs2273344	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	11119899	rs7545802	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	11132408	rs114816910	C	T	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	11134470	.	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.283;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	11151779	rs1148482	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11181327	rs11121691	C	T	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	11187893	rs1770344	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	11190646	rs2275527	G	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	11206623	rs3730384	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	11293367	.	TA	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=2.514;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	11294382	rs77321007	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	11333542	rs72856992	T	G	99.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	11562739	rs370269221	C	T	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	11584104	rs61744873	C	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	11591674	rs141767050	G	A	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	11593793	rs113116961	T	TGCACACACGCAC	4997.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;MQRankSum=0.722;QD=34.47;ReadPosRankSum=1.301;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:5,140:0.97:145
chr1	11594400	rs2235663	T	C	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr1	11596858	.	C	T	150.84	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	11708736	rs1055547	T	C	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	11709051	rs56192923	A	AG	3743.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.161;QD=41.14;ReadPosRankSum=-0.962;SOR=0.380;set=HC	GT:AD:AF:DP	1/1:1,90:0.99:91
chr1	11709052	.	C	G	1164	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=3;HapScore=1;MGOF=18;MMLQ=25;MQ=59.71;NF=39;NR=26;PP=1164;QD=18.4426340392;SC=GCCCAGCCCACCCCAGCCCAG;SbPval=0.53;Source=Platypus;TC=65;TCF=39;TCR=26;TR=65;WE=11709060;WS=11709042;set=Platypus	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	11709052	.	C	CCCAG	3743.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.161;QD=41.14;ReadPosRankSum=-0.198;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:1,90:0.99:91
chr1	11710779	.	CGCG	C	2567.73	.	AC=2;AF=1.00;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	11714368	rs2272983	T	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	11731927	rs3215521	AG	A	1549.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	11737051	rs2294638	G	C	11389.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-1.113;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:2,446:1.00:448
chr1	11740358	rs7417320	A	G	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	11771988	rs17037327	A	G	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	11772303	rs1883574	A	G	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	11772340	rs2336034	G	A	4234.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=1.100;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:2,168:0.99:170
chr1	11779499	rs4846028	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	11779762	rs12117076	C	T	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	11782814	rs7414943	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	11782886	rs6540990	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.320;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	11796168	rs146190997	CGGGCG	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	11807426	rs12752700	C	T	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	11825851	rs10218813	G	C	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	11827180	rs6540995	A	G	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	11827304	rs6540996	A	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	11831512	rs74053312	C	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	11836441	rs6699669	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	11844424	rs7523653	G	A	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	11845113	rs11587953	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	11845137	rs149530892	TG	T	2679.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	11845375	rs74053317	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	11848054	rs34733339	T	C	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	11848879	rs2077360	A	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	11849447	rs868014	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	11852241	rs45578836	C	G	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	11863277	rs17037404	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	11866513	rs185998105	G	A	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	11867044	rs3737964	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	11876692	rs57044879	G	A	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	11879685	rs198393	C	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	11879699	rs2050265	A	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	11884555	rs198400	A	G	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	11884586	rs60602304	G	A	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	11884628	rs74053322	G	A	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	11886124	rs111975660	C	CT	375.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.010;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=0.780;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	11886371	rs113253476	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	11886383	rs138460149	C	CTG	3526.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	11887303	rs7537765	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	11888384	rs198401	A	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	11889468	rs535107	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	11893722	rs74053324	G	A	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	11894252	rs74053325	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	11897271	rs198405	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	11897592	rs198406	A	G	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	11898849	rs198409	T	G	12474.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr1	11900035	rs198410	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr1	11905981	rs5067	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	11906068	rs5065	A	G	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	11917620	rs35207557	T	TA	1189.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	11982544	rs2639453	T	C	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	12004479	rs147315410	TACAC	T,TAC	1308.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=-0.888;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:1,19,28:0.40,0.58:48
chr1	12009956	rs7551175	G	A	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	12010469	rs2273285	G	T	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	12024235	rs1130529	C	T	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	12027204	rs2273293	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	12033113	rs3737961	A	G	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=2.379;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	12033120	rs3820190	G	C	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=2.813;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	12049384	rs61733200	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	12052553	rs17037562	C	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	12056440	rs2236056	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	12057593	rs78727601	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	12062205	rs2236057	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr1	12069586	rs115175952	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	12069798	rs77262016	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	12071680	rs1042842	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	12073251	.	G	GA	69.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	12082334	rs11553925	A	T	9051.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,350:0.99:352
chr1	12082881	rs11588779	C	T	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	12082926	rs2295283	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	12090001	rs4514248	T	C	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr1	12091210	rs946461	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	12175729	rs1763642	C	T	8599.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	12183174	rs4846096	A	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	12198635	rs6419481	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	12226940	rs201716195	C	CCAG	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	12248942	rs945439	A	G	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	12248965	rs945438	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	12249020	rs1815530	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	12249031	rs1201157	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	12250979	rs5746016	C	T	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	12251191	rs472093	T	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	12251765	rs498906	T	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	12251808	rs653667	T	G	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	12252333	.	CTGTG	C	738.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=38.88;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	12252892	rs1768642	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	12252955	rs1061622	T	G	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	12253351	rs636964	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	12254201	rs2275416	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	12317052	rs138858983	C	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	12401868	rs28551666	A	C	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	12409468	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.368;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr1	12418700	rs10864552	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	12567232	rs7554257	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	12638964	rs2275875	T	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	12639168	rs3128461	A	G	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	12722028	rs1892065	A	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	12725943	rs1419298	T	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr1	12726317	rs58218425	C	T	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr1	12776218	rs3000860	A	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	12776344	rs3000859	A	T	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	12888601	rs113914674	G	GC	930.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	12907282	rs139731855	G	C	3086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.089;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-8.426;QD=15.06;ReadPosRankSum=1.890;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:123,82:0.40:205
chr1	12907284	rs149796618	TG	CC	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.112;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-8.501;QD=15.06;ReadPosRankSum=1.386;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:123,83:0.40:206
chr1	12907316	rs112607517	T	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:165,102:0.38:267
chr1	12907350	rs2359486	CA	TG	3187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=18.054;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-15.129;QD=9.32;ReadPosRankSum=2.018;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:246,96:0.28:342
chr1	12907370	rs2076063	A	T	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=19.415;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-14.787;QD=5.57;ReadPosRankSum=-1.376;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:296,80:0.21:376
chr1	12907379	rs74055698	T	C	11598.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	12907380	rs141207681	C	A	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.669;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=41.949;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-13.511;QD=4.50;ReadPosRankSum=-1.523;SOR=2.060;set=HC	GT:AD:AF:DP	0/1:327,64:0.16:391
chr1	12907385	rs150590256	G	A	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.334;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=33.683;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=-13.356;QD=4.15;ReadPosRankSum=-2.995;SOR=1.951;set=HC	GT:AD:AF:DP	0/1:334,61:0.15:395
chr1	12907400	rs149302457	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.964;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=28.772;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-11.352;QD=0.57;ReadPosRankSum=-2.137;SOR=2.515;set=HC	GT:AD:AF:DP	0/1:355,36:0.09:391
chr1	12907777	rs28391533	T	C	2284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.407;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=43.294;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-13.077;QD=8.10;ReadPosRankSum=-3.397;SOR=2.593;set=HC	GT:AD:AF:DP	0/1:218,64:0.23:282
chr1	12907781	rs28441396	T	C	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.061;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=39.245;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-11.911;QD=9.90;ReadPosRankSum=-3.655;SOR=2.333;set=HC	GT:AD:AF:DP	0/1:218,74:0.25:292
chr1	12907798	rs150096254	A	C	4410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=19.139;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-9.552;QD=12.93;ReadPosRankSum=-4.272;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:222,119:0.35:341
chr1	12907802	rs138087690	CC	TT	4594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=24.453;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-9.243;QD=13.05;ReadPosRankSum=-3.503;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:226,126:0.36:352
chr1	12907837	rs1736811	C	T	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:232,212:0.48:444
chr1	12907885	rs848418	T	C	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:352,202:0.36:554
chr1	12908107	rs75413022	G	A	6215.77	.	AC=1;AF=0.500;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	0/1:757,381:0.33:1138
chr1	12908236	rs1736809	G	T	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=7.632;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-4.354;QD=12.99;ReadPosRankSum=-0.742;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr1	12908243	rs1736808	A	G	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.171;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-4.187;QD=14.09;ReadPosRankSum=0.025;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:59,34:0.37:93
chr1	12919067	rs17038657	C	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	12919081	rs45443899	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	12919983	rs77138000	G	A	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr1	12921127	rs12139549	A	G	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	12921196	rs146902655	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	13182899	rs28537666	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	13182929	rs76623819	T	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-1.386;QD=2.54;ReadPosRankSum=1.887;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	13183439	rs28713604	T	C	5291.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:150,250:0.62:400
chr1	13183511	rs72864546	T	C	5407.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:213,161:0.43:374
chr1	13183528	rs76937665	A	C	4734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=13.240;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-9.412;QD=13.01;ReadPosRankSum=1.188;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:239,125:0.34:364
chr1	13183532	rs77505369	CC	TT	4395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=16.340;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-9.708;QD=12.42;ReadPosRankSum=0.490;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:238,116:0.33:354
chr1	13183567	rs78160026	C	T	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.473;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=39.987;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-12.148;QD=4.24;ReadPosRankSum=-4.538;SOR=2.534;set=HC	GT:AD:AF:DP	0/1:248,56:0.18:304
chr1	13183573	rs76669210	G	T	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.074;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=55.454;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-12.430;QD=3.76;ReadPosRankSum=-4.015;SOR=3.669;set=HC	GT:AD:AF:DP	0/1:243,42:0.15:285
chr1	13183966	rs80025711	G	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.974;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=11.325;MLEAC=1;MLEAF=0.500;MQ=51.47;MQRankSum=-4.676;QD=2.22;ReadPosRankSum=2.224;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr1	13695974	rs142734546	T	C	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.40;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	13910417	rs355025	C	T	7723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.471;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-0.852;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,297:1.00:298
chr1	13933629	rs77963296	A	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	13936953	rs12080985	C	T	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	13940864	rs2486188	C	G	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	13942293	rs74699937	A	C	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=2.662;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	14143003	rs1046331	A	G	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	14149505	rs2697970	C	A	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	14149601	rs2697969	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	14149622	rs2697968	T	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	14507057	rs10928050	A	G	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	15287126	rs11808058	C	T	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	15382607	rs79632856	G	A	11250.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	15390145	rs2076565	A	G	19986.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	15390178	rs2076564	C	T	17252.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	15390211	rs2076563	G	A	10924.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	15428358	rs477953	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	2981.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.50;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	15497727	rs6429722	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	15573775	rs1780598	A	G	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15578195	rs1622686	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15616183	rs487338	T	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr1	15642912	rs10927771	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	15650784	rs3765354	T	G	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	15650791	rs3765355	G	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.02;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	15651062	rs3765356	A	G	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	15653503	rs7532559	A	G	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	15654737	rs144888008	C	CT	1278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.053;QD=10.07;ReadPosRankSum=0.384;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:38,89:0.70:127
chr1	15668276	rs763821	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	15687026	.	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	15694162	rs146166298	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	15700942	rs76421461	G	A	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	15701116	rs10927776	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	15702297	rs2496342	T	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr1	15707688	rs76323473	G	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	15707714	rs12096625	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	15707996	.	T	C	101	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=3;HapScore=2;MGOF=37;MMLQ=28;MQ=60.0;NF=1;NR=5;PP=101;QD=22.6285354245;SC=GCCTCCCTTCTCCTGGCTAAA;SbPval=0.66;Source=Platypus;TC=6;TCF=1;TCR=5;TR=6;WE=15708004;WS=15707986;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	15708540	rs1010294	A	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr1	15708716	rs9919231	C	A	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15709516	rs79540080	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:5,59:0.92:64
chr1	15709553	rs111605147	AC	A	3362.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	15710226	rs55823174	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	15710411	rs2496338	G	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	15710493	rs3831918	CAT	C	820.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	15714774	rs3737694	T	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=39.05;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	15714792	.	T	TTCCCTTCCCTCCCCAGCCCCTGCCCCACCTCCCTCCCTCCCCTCCCCAGCCCCTGCCCCACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCCCTCCCCAGTCCCTGTCCAACCTCCCTCCCTCCCTCCCTCCCTTCCCTCCCCAGTCCCTGCCCCACCTCCCTCCC	2144.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr1	15714831	rs113932963	C	CCATT	3547.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.94;QD=20.87;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	15714842	rs3002000	G	C	8779.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=41.41;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	15717838	rs2473338	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	15724033	rs2253372	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	15752379	rs34866686	G	A	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	15754371	rs72865114	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	15754484	rs2473356	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	15754536	rs72865121	C	A	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	15755221	rs77815160	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	15755225	rs115830229	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15769876	rs35149641	G	GC	3102.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	15771147	.	G	T	5960.77	.	AC=2;AF=1.00;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr1	15772933	rs555015	A	G	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	15783096	rs5772641	GA	G	4270.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=5.229;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=19.96;ReadPosRankSum=-0.962;SOR=0.094;set=HC	GT:AD:AF:DP	1/1:4,210:0.98:214
chr1	15783117	rs5772642	C	CA	10146.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	15788269	rs3737696	A	C	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	15789297	rs3815787	A	C	17575.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr1	15792426	rs2901964	C	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	15802925	rs72643675	G	T	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	15812432	rs6429745	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	15813751	rs2011159	C	T	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	15813969	rs3737704	A	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	15820576	rs2020900	T	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	15820618	rs2020898	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	15850483	rs4645985	G	A	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15871154	rs7528011	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	15873410	.	C	CTT	1152.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=18.59;ReadPosRankSum=0.021;SOR=0.258;set=HC	GT:AD:AF:DP	1/1:7,55:0.89:62
chr1	15890355	.	A	AAAG	229.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.64;QD=28.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	15892277	rs139308799	GA	G	166.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	15892415	rs2236215	A	C	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	15906696	rs34166013	CT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.482;QD=6.21;ReadPosRankSum=-0.166;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr1	15909547	rs6429756	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	15909624	rs111921608	TGAGTACAG	T	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	15909744	rs11580170	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	15909850	rs6429757	C	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	15909895	rs6429758	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	15911031	rs10927808	T	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	15911131	rs59475085	G	A	11637.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	15911493	rs6687474	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	15944384	rs75354298	G	A	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	15956769	rs72647120	G	T	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	15959886	rs3795762	C	G	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	15959977	rs3795763	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	15986547	rs3766163	T	C	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	16011005	.	G	GGGC	2451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=0.798;QD=36.59;ReadPosRankSum=-0.231;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,61:0.91:67
chr1	16011192	.	G	GGCGACCCTGCTGCCGCAGGGACTC	1018.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	16042724	rs66610224	TC	T	1215.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=2.666;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:45,84:0.65:129
chr1	16042725	rs76932674	C	T	100.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-2.332;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:106,23:0.18:129
chr1	16042766	rs12091750	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	16043157	rs2280115	G	A	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr1	16044401	rs16851970	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	16044929	rs35757484	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	16044945	rs12091644	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	16047726	rs12734937	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	16048005	rs12091326	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	16048038	rs12092485	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	16051745	rs145370112	A	G	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	16055732	rs6429772	C	T	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	16056364	rs3817269	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	16065020	rs72882193	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	16068979	rs72883912	C	T	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr1	16237577	rs10927871	G	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	16254571	rs74054882	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	16256006	rs74054883	CT	GC	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	16259813	rs848210	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	16268784	rs72885816	C	T	9299.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	16269477	rs57569573	T	TG	1069.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	16272878	.	C	T	3560.77	.	AC=2;AF=1.00;AN=2;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	16359052	rs10927893	A	G	6398.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-1.598;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:4,254:0.98:258
chr1	16361875	rs11807054	A	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.83;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	16362621	rs2009044	G	A	8365.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.01;MQRankSum=-0.460;QD=25.74;ReadPosRankSum=-0.863;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:2,323:0.99:325
chr1	16375510	rs11588392	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	16380243	rs2275166	A	G	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	16383448	rs10803415	A	C	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	16383668	rs6660218	T	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	16383742	rs1057857	C	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	16385131	rs1832151	C	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-0.411;QD=13.62;ReadPosRankSum=-1.504;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr1	16386447	rs11576236	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	16388646	rs2863456	T	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.37;QD=24.76;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	16388709	rs28570004	G	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	16388756	rs113174531	CACCCAT	C	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	16388766	rs3978469	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	16458187	rs59377363	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	16460541	rs6603855	T	C	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	16462000	rs60756788	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr1	16462078	.	G	C	3879.77	.	AC=2;AF=1.00;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr1	16474839	rs35127370	AC	A	5412.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	16528233	rs221037	G	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	16528469	rs58225172	GCCTACCCTAGGGAC	GTACCCTAGGGAC,G	2075.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=54;set=Intersection	GT:AF:DP	1/1:1.00:47
chr1	16528472	rs200243292	TACCCTAGGGACC	T	2073.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	16528484	.	C	T	534	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=13;NR=17;PP=534;QD=18.9590404182;SC=CCCTAGGGACCCATGTCTGCC;SbPval=0.66;Source=Platypus;TC=33;TCF=15;TCR=18;TR=30;WE=16528492;WS=16528459;set=Platypus	GT:AD:AF:DP	1/1:3,30:0.91:33
chr1	16528823	rs71574165	GCCATGGGGACGGGGTGCCCA	G	1381.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16529117	rs221039	T	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	16532803	rs221050	G	A	6993.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	16532848	rs221051	A	G	8384.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr1	16533022	rs221052	C	T	12016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.117;QD=26.35;ReadPosRankSum=-0.606;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:2,454:1.00:456
chr1	16533085	rs34933259	A	AC	2433.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:3,83:0.97:86
chr1	16533817	rs170234	T	C	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	16534002	rs221056	C	G	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	16534255	rs221057	C	G	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	16534730	rs221059	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	16542937	rs2273312	T	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	16543175	rs221024	A	C	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	16543544	rs58627549	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	16559258	rs114006597	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16559541	rs3738631	C	G	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	16560044	rs74951437	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	16562968	rs6603850	C	A	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	16577908	rs12069239	G	C	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	16582975	rs74999931	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	16621183	rs1007150	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16719900	rs140065746	C	T	10635.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	16731646	rs3106498	T	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	16736546	rs10907226	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	16776743	rs35074812	G	GT	506.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	16803003	rs116637308	G	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	16803267	rs156846	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	16803482	rs113304812	T	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;QD=24.16;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	16862296	rs1759227	G	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:101,33:0.25:134
chr1	16862340	rs200564364	G	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=48.17;MQRankSum=-7.552;QD=2.75;ReadPosRankSum=0.139;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:284,80:0.22:364
chr1	16862454	rs71248115	T	G	27319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=918;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-14.871;QD=29.83;ReadPosRankSum=-2.104;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:229,687:0.75:916
chr1	16862461	rs145386412	T	A	27970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.94;MQRankSum=-15.935;QD=29.54;ReadPosRankSum=-1.580;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:234,713:0.75:947
chr1	16862491	.	C	A	4018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DP=1116;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-4.050;QD=3.60;ReadPosRankSum=-0.396;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:828,287:0.26:1115
chr1	16862502	rs141629643	A	G	19207.77	.	AC=1;AF=0.500;AN=2;DB;DP=1148;set=Intersection	GT:AD:AF:DP	0/1:279,863:0.76:1142
chr1	16862597	.	G	A	2610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DP=815;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=52.26;MQRankSum=-4.319;QD=3.20;ReadPosRankSum=-0.803;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:620,195:0.24:815
chr1	16862708	rs1762987	T	G	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=13.496;MLEAC=1;MLEAF=0.500;MQ=50.17;MQRankSum=-5.582;QD=20.58;ReadPosRankSum=-3.190;SOR=2.367;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr1	16862712	rs61769538	G	T	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.343;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=12.897;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-5.651;QD=23.09;ReadPosRankSum=-3.427;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr1	16862714	rs61769539	T	G	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=7.813;MLEAC=1;MLEAF=0.500;MQ=50.67;MQRankSum=-5.517;QD=22.51;ReadPosRankSum=-3.948;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr1	16862732	.	A	G	97.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	16863286	rs146804457	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-7.638;QD=0.21;ReadPosRankSum=-5.641;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:359,53:0.13:412
chr1	16863304	rs61769542	T	C	4997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-15.028;QD=10.16;ReadPosRankSum=-6.215;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:353,139:0.28:492
chr1	16863308	rs112689425	G	T	5427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-14.998;QD=11.01;ReadPosRankSum=-6.427;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:344,149:0.30:493
chr1	16863313	rs76539488	C	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-4.681;QD=1.46;ReadPosRankSum=-2.246;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:412,89:0.18:501
chr1	16863314	rs74927161	A	G	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-15.451;QD=11.06;ReadPosRankSum=-5.574;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:344,165:0.32:509
chr1	16863328	rs61769543	T	G	4488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-15.097;QD=7.77;ReadPosRankSum=-2.201;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:372,206:0.36:578
chr1	16863352	rs61769544	C	T	5685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-15.940;QD=9.32;ReadPosRankSum=-0.050;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:348,262:0.43:610
chr1	16863382	rs1759237	A	T	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=4.208;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-18.543;QD=2.37;ReadPosRankSum=8.257;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:404,109:0.21:513
chr1	16863398	rs61769545	A	C	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=4.754;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-17.637;QD=3.81;ReadPosRankSum=7.362;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:293,110:0.27:403
chr1	16946500	.	AG	A	166.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	16948473	rs446948	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=3.828;QD=10.20;ReadPosRankSum=-0.114;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr1	16948473	.	CC	TG	276	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=18;MQ=56.79;NF=12;NR=11;PP=276;QD=14.3246902114;SC=AAGTCCTCCTCCTGGGCTGCC;SbPval=0.34;Source=Platypus;TC=49;TCF=29;TCR=20;TR=23;WE=16948482;WS=16948463;set=Platypus	GT:AD:AF:DP	0/1:26,23:0.47:49
chr1	16948474	rs2781579	C	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;QD=35.10;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	16948494	.	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-4.260;QD=3.11;ReadPosRankSum=0.105;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr1	16948573	rs201131645	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-5.931;QD=3.13;ReadPosRankSum=0.142;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr1	16950251	.	AG	A	20	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=56.34;NF=1;NR=1;PP=20;QD=34.515449935;SC=ACTGGAACCCAGGCCAGCCAG;SbPval=0.36;Source=Platypus;TC=5;TCF=1;TCR=4;TR=2;WE=16950259;WS=16950241;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr1	16969246	rs11260857	G	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.949;QD=1.27;ReadPosRankSum=2.734;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:272,53:0.16:325
chr1	16969381	rs9727604	C	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:111,215:0.66:326
chr1	16973152	rs1970920	A	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.583;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=30.555;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-10.383;QD=7.49;ReadPosRankSum=-3.928;SOR=3.251;set=HC	GT:AD:AF:DP	0/1:133,22:0.14:155
chr1	16973155	rs371280231	C	G	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.950;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=23.616;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-11.947;QD=9.39;ReadPosRankSum=-6.648;SOR=2.134;set=HC	GT:AD:AF:DP	0/1:130,43:0.25:173
chr1	16973159	rs374474199	A	T	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=19.125;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-12.487;QD=9.33;ReadPosRankSum=-7.388;SOR=1.667;set=HC	GT:AD:AF:DP	0/1:130,60:0.32:190
chr1	16973198	rs368927391	G	A	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.062;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=51.22;MQRankSum=-11.221;QD=9.59;ReadPosRankSum=0.286;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:98,106:0.52:204
chr1	16973301	.	C	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=5.785;MLEAC=1;MLEAF=0.500;MQ=48.76;MQRankSum=-2.810;QD=0.79;ReadPosRankSum=-3.744;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr1	16973484	.	C	T	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=12.576;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=-5.649;QD=4.23;ReadPosRankSum=-3.289;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:137,46:0.25:183
chr1	16973554	.	C	T	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DP=463;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=-5.920;QD=5.61;ReadPosRankSum=1.239;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:309,154:0.33:463
chr1	16973606	rs76859932	G	T	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:373,213:0.36:586
chr1	16973996	rs200256873	A	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-1.467;QD=6.20;ReadPosRankSum=-1.538;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	16974010	rs201140718	G	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-1.789;QD=7.55;ReadPosRankSum=-2.347;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr1	16974243	rs372123873	G	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=48.49;MQRankSum=-3.613;QD=0.71;ReadPosRankSum=-1.002;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:49,7:0.12:56
chr1	16974256	.	G	C	427.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr1	16974370	.	C	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.676;ClippingRankSum=0.000;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.01;MQRankSum=-7.672;QD=1.00;ReadPosRankSum=-2.788;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:481,81:0.14:562
chr1	16974454	rs375184454	TGG	T	19305.73	.	AC=1;AF=0.500;AN=2;DB;DP=1091;set=Intersection	GT:AD:AF:DP	0/1:493,552:0.53:1045
chr1	16974637	rs16854791	T	C	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:255,131:0.34:386
chr1	16974662	rs28460410	C	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=13.042;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-2.274;QD=0.58;ReadPosRankSum=0.419;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:271,40:0.13:311
chr1	16975045	rs55763726	G	A	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.062;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=9.429;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-11.686;QD=2.89;ReadPosRankSum=-1.800;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:441,85:0.16:526
chr1	16975201	rs377169156	CT	C	2604.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=918;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=3.809;QD=2.87;ReadPosRankSum=-2.199;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:740,167:0.18:907
chr1	16975202	rs28602904	T	C	10509.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:392,513:0.57:905
chr1	16975230	rs2761535	G	C	22993.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:0,792:1.00:792
chr1	16975278	rs111244008	A	AC	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=6.934;MLEAC=1;MLEAF=0.500;MQ=50.00;MQRankSum=-3.090;QD=1.37;ReadPosRankSum=0.053;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:402,86:0.18:488
chr1	16975699	rs200224719	A	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=48.43;MQRankSum=-2.996;QD=2.72;ReadPosRankSum=1.389;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:94,27:0.22:121
chr1	16975713	.	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=-3.022;QD=2.58;ReadPosRankSum=1.080;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr1	16975890	.	G	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=46.13;MQRankSum=-2.341;QD=2.58;ReadPosRankSum=-0.478;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:89,25:0.22:114
chr1	16975994	rs2261801	T	C	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=20.344;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-14.341;QD=3.44;ReadPosRankSum=-2.177;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:239,70:0.23:309
chr1	16976032	rs2483047	A	C	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=3.156;QD=2.90;ReadPosRankSum=0.173;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:331,96:0.22:427
chr1	16976143	.	CG	TA	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=476;ExcessHet=3.0103;FS=1.954;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-6.194;QD=1.57;ReadPosRankSum=0.918;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:420,49:0.10:469
chr1	16976193	rs61772256	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.760;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=14.333;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-12.695;QD=1.60;ReadPosRankSum=-3.166;SOR=1.841;set=HC	GT:AD:AF:DP	0/1:403,65:0.14:468
chr1	16976557	.	C	G	1021.77	.	AC=1;AF=0.500;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	0/1:159,65:0.29:224
chr1	16976569	rs78288272	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-7.425;QD=0.55;ReadPosRankSum=-0.469;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:232,36:0.13:268
chr1	16976585	rs1135350	C	T	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=1.493;QD=4.51;ReadPosRankSum=-0.083;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:234,93:0.28:327
chr1	16976620	rs55885953	A	G	10110.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:96,440:0.82:536
chr1	16976641	rs1057417	C	T	2915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=-6.442;QD=4.40;ReadPosRankSum=1.536;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:554,109:0.16:663
chr1	16976649	rs1057333	C	T	3005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.322;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-7.105;QD=4.45;ReadPosRankSum=0.029;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:558,117:0.17:675
chr1	16976679	rs1065528	G	A	6608.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:236,313:0.57:549
chr1	16976681	rs3175284	G	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=47.59;MQRankSum=-4.908;QD=0.93;ReadPosRankSum=-0.841;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:456,84:0.16:540
chr1	17022952	rs557690	C	A	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=25.25;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	17023182	rs614461	C	G	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:102,73:0.42:175
chr1	17023511	rs563144	C	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr1	17025975	.	G	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-2.215;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:47,54:0.53:101
chr1	17026004	rs9661305	C	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:101,75:0.43:176
chr1	17026040	.	G	GGCGGCGGCA	2398.73	.	AC=1;AF=0.500;AN=2;DP=235;set=Intersection	GT:AD:AF:DP	0/1:105,116:0.52:221
chr1	17026065	.	C	T	4912.77	.	AC=1;AF=0.500;AN=2;DP=235;set=Intersection	GT:AD:AF:DP	0/1:110,123:0.53:233
chr1	17026087	rs678369	G	A	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:112,118:0.51:230
chr1	17026137	rs139655951	G	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr1	17026304	rs9725055	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17030325	rs601893	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	17033724	rs149581089	A	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-0.014;QD=10.57;ReadPosRankSum=-1.244;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chr1	17033854	rs2476568	C	T	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:99,88:0.47:187
chr1	17034041	rs2743505	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	17034268	rs55732718	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	17034371	rs115861805	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr1	17034642	rs114436650	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	17044511	rs2773185	T	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr1	17044695	rs2773186	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr1	17044748	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	17046361	rs3856291	A	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr1	17046456	rs3856292	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:100,103:0.51:203
chr1	17046595	rs3856293	T	C	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:89,78:0.47:167
chr1	17046613	rs3856294	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr1	17046698	rs3982089	C	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-1.568;QD=7.79;ReadPosRankSum=-0.935;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr1	17083797	.	C	T	4734.77	.	AC=2;AF=1.00;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	1/1:6,193:0.97:199
chr1	17083837	rs7798	T	C	6724.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;MQRankSum=3.803;QD=41.51;ReadPosRankSum=1.221;SOR=0.623;set=HC	GT:AD:AF:DP	1/1:5,157:0.97:162
chr1	17083837	.	TCA	CCT	2704	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=75;MMLQ=27;MQ=43.71;NF=33;NR=50;PP=2704;QD=20;SC=CTAATTCCTTTCAGGACCCAG;SbPval=0.42;Source=Platypus;TC=94;TCF=35;TCR=59;TR=83;WE=17083847;WS=17083827;set=Platypus	GT:AD:AF:DP	1/0:11,83:0.88:94
chr1	17083839	.	A	T	3650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.87;MQRankSum=3.782;QD=22.96;ReadPosRankSum=0.197;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:7,152:0.96:159
chr1	17083863	.	C	A	4850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.74;MQRankSum=3.671;QD=37.03;ReadPosRankSum=-1.080;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:7,124:0.95:131
chr1	17083872	rs61635893	G	A	4505.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.67;MQRankSum=3.607;QD=40.23;ReadPosRankSum=-1.016;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:7,105:0.94:112
chr1	17083888	rs75141545	C	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr1	17083929	rs138589297	A	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.91;QD=29.42;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17084006	rs2446544	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.69;MQRankSum=0.138;QD=5.11;ReadPosRankSum=-0.975;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr1	17084017	.	C	A	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-5.139;QD=5.95;ReadPosRankSum=0.685;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:100,48:0.32:148
chr1	17084057	.	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DP=373;set=Intersection	GT:AD:AF:DP	0/1:230,126:0.35:356
chr1	17084269	.	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DP=430;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-11.410;QD=2.17;ReadPosRankSum=-7.265;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:343,85:0.20:428
chr1	17084755	rs140682808	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.58;QD=27.35;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	17084968	rs2761533	G	C	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:100,181:0.64:281
chr1	17085127	.	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=0.012;QD=6.20;ReadPosRankSum=-1.898;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:64,32:0.33:96
chr1	17085165	rs2490828	G	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.24;QD=29.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	17085254	rs367906941	GA	G	66.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=0.035;QD=6.07;ReadPosRankSum=-1.668;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	17085255	rs2281029	A	G	37.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=-1.537;QD=3.43;ReadPosRankSum=2.965;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	17085267	rs2077142	A	G	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.87;QD=25.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	17085375	rs28695262	T	C	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=-7.980;QD=1.24;ReadPosRankSum=-0.731;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:248,51:0.17:299
chr1	17085408	rs28665006	C	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=5.026;MLEAC=1;MLEAF=0.500;MQ=52.16;MQRankSum=-9.983;QD=2.01;ReadPosRankSum=0.780;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:317,79:0.20:396
chr1	17085412	rs872964	C	T	7360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-15.151;QD=18.22;ReadPosRankSum=2.016;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:216,188:0.47:404
chr1	17085427	rs2002186	T	C	7624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=3.176;MLEAC=1;MLEAF=0.500;MQ=52.33;MQRankSum=-16.295;QD=17.98;ReadPosRankSum=3.128;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:217,207:0.49:424
chr1	17085542	rs2261754	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:91,25:0.22:116
chr1	17085564	rs3851921	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr1	17085589	rs3863807	A	C	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.741;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.500;MQ=46.31;MQRankSum=5.557;QD=14.55;ReadPosRankSum=-0.058;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:27,56:0.67:83
chr1	17085671	rs3863806	C	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-3.413;QD=17.88;ReadPosRankSum=0.193;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:32,50:0.61:82
chr1	17085677	rs3863805	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.86;MQRankSum=-3.166;QD=3.13;ReadPosRankSum=0.359;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr1	17085712	rs3863803	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-0.996;QD=2.86;ReadPosRankSum=0.787;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr1	17085834	rs2005622	G	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	17086052	rs1057286	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	17086085	rs200532237	G	GC	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.95;QD=33.14;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17086976	.	G	A	4290.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:105,194:0.65:299
chr1	17087103	rs199992357	G	C	5863.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:137,265:0.66:402
chr1	17087143	.	C	G	1286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-0.355;QD=5.30;ReadPosRankSum=0.297;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:166,77:0.32:243
chr1	17087159	rs181826692	G	C	2673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=14.255;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=0.154;QD=12.49;ReadPosRankSum=1.787;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:90,124:0.58:214
chr1	17087262	rs2926375	C	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.716;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=11.079;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-13.525;QD=2.65;ReadPosRankSum=-4.598;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:252,57:0.18:309
chr1	17087292	rs2179161	A	G	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.368;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=19.506;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-16.888;QD=2.61;ReadPosRankSum=-2.878;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:294,79:0.21:373
chr1	17087299	rs2179162	T	C	3586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.755;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=22.489;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-16.001;QD=9.34;ReadPosRankSum=-3.520;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:280,104:0.27:384
chr1	17087305	rs12046578	G	C	3775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.290;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=16.961;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-16.155;QD=9.76;ReadPosRankSum=-3.659;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:270,117:0.30:387
chr1	17087365	rs2446556	C	G	6515.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:192,297:0.61:489
chr1	17087465	rs11260924	G	A	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-2.344;QD=3.97;ReadPosRankSum=-2.387;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:424,157:0.27:581
chr1	17087509	.	C	T	8643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-3.701;QD=16.53;ReadPosRankSum=-0.759;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:290,233:0.45:523
chr1	17087515	.	A	T	8466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-4.004;QD=16.60;ReadPosRankSum=-0.787;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:287,223:0.44:510
chr1	17087541	rs113982165	GGTGCT	G	10869.73	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:144,272:0.65:416
chr1	17087562	.	G	A	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.70;MQRankSum=-7.057;QD=2.56;ReadPosRankSum=1.889;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:316,84:0.21:400
chr1	17087582	rs10907280	G	A	6140.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:118,218:0.65:336
chr1	17087682	rs9725203	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr1	17090902	.	A	AT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-2.270;QD=2.05;ReadPosRankSum=1.008;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr1	17197563	rs7556482	G	T	3914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.503;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=8.179;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-17.054;QD=9.57;ReadPosRankSum=-5.394;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:294,115:0.28:409
chr1	17197571	rs76372883	G	A	4778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=6.602;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-17.224;QD=11.09;ReadPosRankSum=-5.029;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:297,134:0.31:431
chr1	17197595	rs201521253	A	C	6729.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:329,203:0.38:532
chr1	17197609	rs150993810	T	C	8647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=3.293;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-18.947;QD=15.31;ReadPosRankSum=4.849;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:337,228:0.40:565
chr1	17197615	rs146936960	C	A	9124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-18.640;QD=16.18;ReadPosRankSum=5.612;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:325,239:0.42:564
chr1	17197619	rs113661539	A	G	9366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-18.387;QD=16.38;ReadPosRankSum=5.683;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:321,251:0.44:572
chr1	17197666	rs74055933	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-4.586;QD=0.35;ReadPosRankSum=0.810;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:460,70:0.13:530
chr1	17197690	rs72642967	T	G	10000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-16.000;QD=23.20;ReadPosRankSum=-2.100;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:169,262:0.61:431
chr1	17197694	rs72642969	G	A	9524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-15.476;QD=24.05;ReadPosRankSum=-0.680;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:164,232:0.59:396
chr1	17197710	rs114564385	G	C	7056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-14.324;QD=23.68;ReadPosRankSum=-1.225;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:121,177:0.59:298
chr1	17197715	rs202012907	G	A	6214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.684;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-14.008;QD=23.72;ReadPosRankSum=0.044;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:113,149:0.57:262
chr1	17197725	rs75030124	C	G	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-10.249;QD=7.99;ReadPosRankSum=-0.565;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:136,91:0.40:227
chr1	17197758	rs143100028	C	G	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-8.480;QD=20.95;ReadPosRankSum=0.722;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:52,68:0.57:120
chr1	17197764	.	G	A	1953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-7.264;QD=18.97;ReadPosRankSum=-0.434;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:43,60:0.58:103
chr1	17197771	rs139655267	G	A	2124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-7.313;QD=23.35;ReadPosRankSum=-0.477;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:38,53:0.58:91
chr1	17197777	rs149102001	T	G	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-6.606;QD=25.98;ReadPosRankSum=-0.167;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:32,42:0.57:74
chr1	17197779	rs138448635	G	A	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-6.592;QD=22.44;ReadPosRankSum=-0.963;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:31,44:0.59:75
chr1	17248532	rs6586566	A	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	17249395	rs6586567	A	G	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	17256236	.	C	T	71.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.89;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	17256645	rs149095491	G	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	17264863	rs4275496	A	G	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	17265327	rs4269813	A	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	17266648	rs11203455	C	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17272777	rs146539995	C	T	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	17273493	rs7537563	A	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	17275046	rs148338395	G	A	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	17280022	rs78911909	A	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-0.224;QD=32.15;ReadPosRankSum=-1.266;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	17280025	rs78271317	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-0.224;QD=32.15;ReadPosRankSum=-1.453;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	17280045	rs74875673	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-0.431;QD=22.29;ReadPosRankSum=-1.834;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	17280051	.	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-0.524;QD=18.35;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	17280057	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-0.524;QD=18.35;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	17280061	.	G	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-0.524;QD=18.35;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	17285022	rs12097969	A	G	222.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17287639	.	C	G	222.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	17292404	rs12059633	A	G	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:3,162:0.98:165
chr1	17294685	rs74058342	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17295679	rs4920574	T	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	17298751	rs59768494	T	C	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	17299014	rs6661019	A	C	1638.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	17299015	rs143697056	C	CCG	1413.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	17301672	rs761423	T	C	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	17301780	rs761422	A	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	17303792	rs4920588	C	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	17313157	rs2076605	G	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	17313654	rs761421	C	T	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	17316577	rs77880760	G	T	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	17318537	rs61734958	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	17319011	rs2076603	G	A	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr1	17331676	rs3738814	A	G	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	17332096	rs150294350	G	A	9802.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	17359676	rs1022580	C	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17380497	rs2746462	G	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	17395480	rs2076599	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	17395521	rs2076598	G	A	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	17395665	rs61731908	G	A	10135.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr1	17396498	rs2076596	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17396557	rs200335052	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	17396703	rs2076595	T	C	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	17398066	rs875219	G	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	17398069	rs875218	T	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	17401283	rs3818041	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17402116	rs3818035	G	T	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	17402135	rs3818034	T	C	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	17402159	rs3818033	G	A	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	17402255	rs3818032	C	T	8369.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	17402347	rs2647205	C	T	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	17402418	rs3818031	A	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	17405809	rs2057096	G	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	17405916	rs2057095	C	T	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	17405949	rs2057094	C	T	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	17406015	rs2057093	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	17411309	.	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	17418883	rs2647184	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	17431681	rs2647172	C	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17531938	rs74058960	G	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	17550225	rs3003481	T	C	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	17551034	rs2293915	A	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17555316	rs2977233	C	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	17555508	rs2977234	G	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	17555637	rs187214740	G	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	17563967	rs2977306	T	C	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	17564990	rs2977310	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.20;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	17564996	rs77578487	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.63;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	17565106	rs143522851	GC	G	5677.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	17570466	rs2293921	T	C	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	17575600	rs76195658	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr1	17593144	rs2272628	C	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	17594263	rs4262593	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	17594592	rs4339902	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	17597314	rs3215408	T	TC	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	17597721	rs4595409	A	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	17601083	rs2293917	C	T	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr1	17609745	rs16824888	C	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	17634831	rs78185114	G	C	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr1	17657534	rs11203366	G	A	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	17657616	rs11203367	T	C	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	17660499	rs874881	G	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	17660660	rs874882	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	17660697	rs1548323	T	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	17661128	rs1555658	A	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	17661659	rs71575828	C	CAT,CATAT	296.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=9;set=Intersection	GT:AF:DP	1/1:1.00:9
chr1	17661805	rs1635594	A	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	17662541	rs1748034	A	C	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17662639	rs2240340	T	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	17662662	rs1748033	T	C	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	17662751	rs1621005	C	G	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	17662804	rs1748032	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	17662907	rs1748031	A	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	17664329	rs1748025	C	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	17664770	rs1635586	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	17668270	rs1748021	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	17668563	rs35903413	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	17672642	rs41266003	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	17681277	rs6683201	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17683041	rs1635567	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	17683157	rs1635566	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17685174	rs2428735	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17698722	rs183768835	C	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	17707739	rs1204898	T	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	17707798	rs10788668	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	17708349	rs7556072	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	17718418	rs72637462	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	17718671	rs10709483	AG	A	5011.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	17720391	rs6678552	G	A	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	17720439	rs6695849	T	C	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	17720615	rs10458537	A	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	17720686	rs34075690	AG	A	2346.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr1	17721388	rs6691485	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	17721695	rs369334834	GTTT	G	744.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17721715	.	G	T	752.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	17721721	rs147310450	TGA	T	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	17723476	rs61476146	C	CCA	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17723739	rs12129196	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	17725157	.	C	CA	129.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.42;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	17725158	.	C	CCCACCCA	366.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.75;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	17725358	rs2244936	C	G	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	17739586	rs942457	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17739820	rs1075535	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	17764627	rs113663016	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17914846	rs1193343	C	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	17934489	rs116140466	T	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr1	17944891	rs80051914	A	C	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	17949487	rs55769404	G	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	17952531	rs725021	A	C	7178.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	17991052	rs6695710	T	C	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	17991196	rs11203432	A	G	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	18016162	rs74061959	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	18016441	rs13376112	T	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	18017522	rs871087	T	C	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr1	18017558	rs871088	A	G	8599.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	18017704	rs871089	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	18152939	rs16830789	C	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	18434518	rs9660391	G	C	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	18691648	rs77188759	G	A	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr1	18702988	rs10796450	T	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	18703328	rs12076815	C	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	18704663	rs72940710	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	18704829	rs72940712	G	A	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	18704843	rs112523304	A	G	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	18704862	rs1043459	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr1	18807851	rs72944731	C	T	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	18808292	rs2992753	C	A	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	18808465	rs3007718	T	A	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	18808526	rs2992752	A	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	18809695	rs376167856	T	C	12455.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,476:1.00:476
chr1	18809896	rs2992745	A	T	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	18810344	rs2992740	G	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	18810380	rs111688839	G	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	19071182	rs3915506	A	G	445.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	19071182	.	AA	GG	580	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=57.43;NF=8;NR=3;PP=580;QD=57.5879886238;SC=ATGGATGGATAAATGGATGGA;SbPval=0.42;Source=Platypus;TC=19;TCF=15;TCR=4;TR=11;WE=19071195;WS=19071172;set=Platypus	GT:AD:AF:DP	1/1:8,11:0.58:19
chr1	19071183	rs3915505	A	G	1131.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	19071187	.	G	GATAA	436.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	19166294	rs12033832	G	A	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	19186129	rs9701796	G	C	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	19186260	rs9700646	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	19186320	rs9701803	G	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19202770	rs7550822	T	C	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	19203997	rs2230705	C	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	19204173	rs6426814	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	19205672	rs28497538	T	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	19208145	rs112548638	G	GGGTTGCCT	4144.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	19208944	rs28566028	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	19209543	rs6426611	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	19210018	rs28508407	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	19215834	rs941495	T	C	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	19223386	rs372356973	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.670;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr1	19238001	.	T	TTTTA	959.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr1	19238580	rs144158925	G	A	9464.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr1	19243589	rs3748586	A	G	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr1	19246320	rs41273181	G	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	19247509	rs35477144	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr1	19282981	rs1886768	A	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19401405	rs2281748	G	A	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	19403146	rs114949523	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	19411129	rs1043905	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	19412464	rs2274009	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	19413261	rs12584	T	A	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	19413420	rs2274008	T	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19415304	rs1043899	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	19420392	rs1106839	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	19426199	rs2236377	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	19433449	rs6426677	A	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	19440107	rs9661719	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19441594	rs56030256	C	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19447819	rs35802543	T	C	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr1	19447843	rs1044010	C	G	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	19448326	rs6681662	C	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	19448608	rs7535738	C	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	19450938	rs6681943	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	19474975	rs2296108	T	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	19483209	rs10799710	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19486804	rs61579638	GA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.343;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr1	19486839	rs946419	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	19487656	rs3748759	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	19491514	rs12133185	G	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	19491857	rs3748757	T	C	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	19499835	rs951908	G	C	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	19500729	rs6694521	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	19510394	rs3762396	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	19513570	rs59833909	TTA	T	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	19518659	rs11588032	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	19519782	rs10799734	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	19525485	rs16862588	A	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	19526363	rs12122656	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	19554099	rs7515397	T	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	19557281	rs12128595	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19557713	rs2275403	G	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	19558018	rs55748756	C	T	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	19559729	rs16862625	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	19565338	rs709682	C	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	19565344	rs709683	C	G	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.33;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	19568722	rs710866	G	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	19568972	rs710865	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	19570426	rs2294944	C	G	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	19578192	rs2294942	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	19581262	.	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	19582563	rs1557133	G	A	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	19583400	rs1774075	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	19583636	rs1126682	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	19583734	rs4912057	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	19584035	rs11811927	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	19595137	rs2235795	C	T	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	19595892	rs6665423	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	19596124	rs2235794	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	19596156	rs6665756	G	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	19609254	rs1738025	T	C	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=26.03;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	19609522	rs140599506	G	A	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	19611227	rs1065658	G	A	13664.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=-0.140;QD=26.38;ReadPosRankSum=0.031;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:2,516:1.00:518
chr1	19611241	rs1738023	T	C	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=26.39;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	19612477	rs2231198	C	T	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	19638309	rs2227295	A	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	19650982	rs41264065	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19651102	rs41264067	A	G	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr1	19651277	rs41264069	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	19651300	rs41264071	T	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	19651330	rs41264073	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	19652063	rs11558390	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	19652127	rs199660210	AGTT	A	1991.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=2.205;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr1	19652128	.	GT	G	1160	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=27;MQ=60.0;NF=3;NR=25;PP=1160;QD=43.1796749954;SC=GCAGGGGGCAGTTGTGGGGGG;SbPval=0.51;Source=Platypus;TC=31;TCF=3;TCR=28;TR=28;WE=19652143;WS=19652118;set=Platypus	GT:AD:AF:DP	1/1:3,28:0.90:31
chr1	19652135	.	G	GGT	1991.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=1.993;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr1	19652684	rs41264077	G	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	19653256	rs7553611	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	19654023	.	A	ATCCCTCCC	2107.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	19927553	rs860847	C	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	19948507	rs728611	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	19950062	rs1737428	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	19950190	.	C	G	1970.77	.	AC=2;AF=1.00;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	19972403	rs114052989	A	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	19972586	rs11810271	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	19981451	rs3828101	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19981791	rs2294630	A	G	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	20005346	rs8192532	A	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	20009471	rs6701531	G	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	20009837	rs116650784	G	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	20020836	rs114562673	G	A	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	20020993	rs4370779	A	G	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	20021108	rs77979313	G	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	20027404	rs10799834	G	A	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	20027423	rs10737480	T	G	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	20216860	rs10799593	G	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	20246762	rs192084901	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	20248646	rs1108972	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	20248651	rs1108973	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	20248709	rs1108974	A	G	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	20249252	.	C	CGG,CGGAGAG	7911.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=222;set=Intersection	GT:AF:DP	1/1:1.00:212
chr1	20249253	.	A	G	1655	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=24;MQ=60.29;NF=43;NR=53;PP=1655;QD=17.601783464;SC=GAGCCACTGCAGAGAGGGAGA;SbPval=0.46;Source=Platypus;TC=101;TCF=43;TCR=58;TR=96;WE=20249261;WS=20249242;set=Platypus	GT:AD:AF:DP	1/1:5,96:0.95:101
chr1	20249253	.	A	AGAGG	7912.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.89;QD=37.32;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	20305065	rs10732279	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	20416407	rs2020889	G	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	20442054	rs584367	T	C	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	20442691	rs3736979	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	20446170	rs11298078	GT	G	3255.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=26.05;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	20466924	rs12563965	G	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	20490518	rs6426616	T	C	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	20499168	rs2301475	T	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr1	20501362	rs6692902	C	T	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	20501582	rs12139100	G	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	20637374	rs10916761	T	C	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	20640691	rs10158438	A	G	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	20644156	rs61745243	T	C	8012.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=3.149;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=2.287;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,317:1.00:318
chr1	20649814	rs4655194	T	C	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	20657352	rs2072753	T	C	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	20657421	rs12072406	C	G	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	20664061	rs742056	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr1	20669518	rs10916771	T	G	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	20671814	rs12086138	C	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	20671833	rs10799629	C	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	20680744	rs115923738	G	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	20680760	rs230180	A	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	20880267	.	C	CGAG	1832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=0.647;QD=36.65;ReadPosRankSum=-2.882;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:4,46:0.92:50
chr1	20880393	rs181675095	G	A	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=24.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	20915589	rs3215400	TC	T	4791.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	20971980	.	CAA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.605;QD=1.99;ReadPosRankSum=0.663;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	20980337	rs182757359	C	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	20981806	rs592851	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	20987873	rs537816	G	C	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	21012575	rs479323	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	21016688	rs112930242	C	T	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	21016906	rs493018	G	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	21024901	rs522496	C	T	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr1	21031265	rs34185675	C	T	8739.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=1.185;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:2,342:0.99:344
chr1	21031278	rs116683388	T	C	7598.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=2.146;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:2,290:0.99:292
chr1	21040079	rs10799661	C	A	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	21043926	rs604645	T	C	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	21044219	rs601392	A	C	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	21050958	rs592060	C	T	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	21083867	rs58898561	T	TA	230.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21099846	rs589755	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	21102502	rs11459072	C	CA	79.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.19;ReadPosRankSum=-1.154;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	21143779	rs200981124	AT	A	71.94	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.39;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	21167404	rs2230573	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	21175855	rs7525082	C	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	21179969	rs7542882	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	21188871	rs17409373	C	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	21295864	rs2271115	C	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	21299363	rs6700718	C	A	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	21307743	rs72210260	A	AT	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.969;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr1	21325360	rs885363	C	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=24.97;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21327637	rs1395508	C	T	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	21377314	rs6426663	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	21494634	rs61779121	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21502724	rs34197724	TGCC	T	5470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=12.131;MLEAC=2;MLEAF=1.000;MQ=60.65;MQRankSum=0.451;QD=39.36;ReadPosRankSum=2.687;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:4,135:0.97:139
chr1	21554319	rs6426676	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	21560060	rs138566481	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	21560253	rs28368029	G	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	21573881	rs2774024	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	21671943	rs2072654	T	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	21751142	rs150916531	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr1	21751214	rs72476501	G	A	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:222,214:0.49:436
chr1	21751325	rs140609058	G	C	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:87,141:0.62:228
chr1	21752721	.	A	T	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-6.925;QD=7.54;ReadPosRankSum=0.632;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:75,57:0.43:132
chr1	21752766	rs144829292	A	G	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.32;MQRankSum=-6.761;QD=14.88;ReadPosRankSum=-1.104;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:66,48:0.42:114
chr1	21752782	rs140348908	T	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-7.525;QD=15.59;ReadPosRankSum=-0.813;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:65,44:0.40:109
chr1	21752830	rs139145324	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.76;MQRankSum=-3.970;QD=6.89;ReadPosRankSum=-0.140;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr1	21753468	rs200991536	T	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.96;QD=25.59;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	21754996	rs12024079	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.01;QD=28.52;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	21755055	rs12024104	C	A	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.79;QD=28.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21755453	rs3856177	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.98;QD=30.31;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	21755539	rs3855556	C	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	21755756	rs56343055	G	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	21755867	rs7522332	A	G	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	21755906	rs3738922	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	21756008	rs3894725	G	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	21756069	rs7532750	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	21795432	rs35175190	G	GA	2747.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	21799489	rs1971327	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	21799823	rs1971328	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	21800185	rs7520015	T	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	21801346	rs7531217	G	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	21804815	rs7535654	T	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	21805730	rs2316504	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	21806751	rs12083322	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	21808159	rs71512991	G	A	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-6.902;QD=8.69;ReadPosRankSum=-2.531;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:126,108:0.46:234
chr1	21808207	rs146564096	A	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-7.686;QD=6.97;ReadPosRankSum=0.791;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:87,53:0.38:140
chr1	21808223	rs145079058	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.369;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=12.129;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-5.663;QD=8.36;ReadPosRankSum=0.508;SOR=2.175;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr1	21809750	rs202069483	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.15;QD=31.72;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	21889635	rs1780316	T	C	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	21890464	rs1767428	A	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.57;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	21894735	rs3200254	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	21894816	rs3738097	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	21896887	rs2275377	G	T	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	21896918	rs2275376	G	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	21896925	rs2275375	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	21900112	rs74063110	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	21900146	rs75829132	C	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	21900151	rs74063111	T	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	21900171	rs3200255	A	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	21900396	rs2275372	AG	CT	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	21900420	rs2275370	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	21900444	rs2275369	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	21902950	rs1780329	C	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	21903791	rs74060010	C	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	21925108	rs2794278	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	21926187	rs1767445	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	21929260	rs829368	A	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	21929456	rs3215988	GC	G	1266.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr1	21930542	rs3767111	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	21932530	rs1767443	C	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	21934667	rs829371	G	A	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	21935358	rs74060020	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	21935884	rs34097078	GA	G	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=14.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.329;SOR=3.556;set=HC	GT:AD:AF:DP	0/1:13,36:0.73:49
chr1	21938375	rs2275364	T	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21939493	rs3767113	G	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	21940555	rs2275363	C	T	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr1	21961339	rs10799706	A	T	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	22005665	rs1059218	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	22030121	rs55633304	A	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:3,84:0.97:87
chr1	22032187	.	G	GA	923.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.99;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	22032472	rs11426922	A	AT	393.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	22033152	rs41265993	G	A	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	22033385	.	GA	G	598.90	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr1	22050649	rs2275668	C	A	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	22082923	rs10458384	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	22141206	rs10917051	A	C	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr1	22157629	rs368577867	C	G	10607.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr1	22174600	rs3767138	A	G	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr1	22179143	rs72866974	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	22191147	rs145998135	C	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	22199925	rs368626586	G	A	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	22214127	rs2229478	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	22222718	rs138518139	T	A	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	22304428	rs12074015	CC	GT	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	22307538	rs7528405	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	22310080	rs10799723	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	22310127	rs4468136	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	22310262	rs10733033	G	C	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.31;QD=25.37;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	22310811	rs112944567	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	22310824	rs1803531	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	22313161	rs1803530	T	C	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	22313469	rs3806296	G	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.99;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	22313521	rs71638814	G	T	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	22315738	rs4655006	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.00;QD=26.78;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	22324547	.	C	T	840.77	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	22324705	rs7534936	T	C	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	22328191	.	CCTCCTCCTTG	C	12955.73	.	AC=2;AF=1.00;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	22328279	rs12751986	C	T	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	22329220	rs55638883	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr1	22329407	rs12756442	G	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	22329645	rs4543768	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	22333688	rs3820289	T	C	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	22336277	rs3820285	C	G	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	22336305	rs9187	C	T	8349.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;MQRankSum=7.602;QD=40.73;ReadPosRankSum=5.009;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:8,197:0.96:205
chr1	22336308	rs12908	G	A	8325.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;MQRankSum=7.516;QD=41.42;ReadPosRankSum=4.899;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:8,193:0.96:201
chr1	22338898	.	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.89;QD=25.21;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	22338929	.	CC	GG	2221.77	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=45.31;QD=44.44;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	22405379	rs34952712	CT	C	113.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=0.668;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	22408106	rs2501282	G	A	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	22447148	rs12756110	G	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	22447645	rs41420150	C	CTG	1571.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	22456442	rs76266212	C	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	22592628	rs115826111	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	22592949	rs76727629	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	22827931	rs4655071	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	22832743	rs209732	A	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	22835677	rs209729	A	G	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	22837849	rs209727	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	22846709	rs209720	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	22890119	.	CGG	C	102	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	22890122	.	CCCG	C	102	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	22913153	rs638058	T	C	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.93;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	22913274	rs66713995	G	GGGGT	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	22915753	rs606002	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	22915978	rs521570	A	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	22922560	rs209691	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	22924464	rs12404556	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	22925292	rs664340	C	G	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	22927314	rs209702	A	G	6720.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	22927326	rs209701	T	G	6783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.444;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-1.063;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,262:1.00:263
chr1	22928064	rs11803982	G	A	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	22928069	rs10917265	C	T	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	22928265	rs209700	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	22928349	rs209699	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	22965438	rs172378	A	G	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	22965935	rs199788933	T	C	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	22970828	rs666656	G	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	22974297	rs9434	C	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	22987958	rs10580	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	23101688	rs1561624	T	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	23107811	rs71020449	TA	T	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.041;QD=9.66;ReadPosRankSum=-1.816;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr1	23108089	rs2817904	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	23189503	rs6679387	G	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	23208925	rs2229872	G	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	23219493	rs309472	T	C	9914.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr1	23286365	rs72873472	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	23289568	rs10799777	T	C	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	23291582	rs4655138	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	23340368	rs488995	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	23342362	rs681648	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	23380198	rs579785	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	23384185	rs28663624	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	23397653	rs592963	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	23398577	rs549656	G	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	23399932	rs967605	C	T	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	23406246	rs567151	C	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	23417923	rs35624540	C	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	23418153	rs10799790	C	T	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	23419261	rs477717	G	A	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	23419383	rs477830	C	T	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	23419855	rs1983965	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	23640222	rs613869	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	23640305	rs627669	A	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	23648345	rs11803953	G	C	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	23689786	rs35676026	AT	A	56.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.24;ReadPosRankSum=-1.383;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	23693385	rs618237	T	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	23696152	rs665977	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	23697617	rs638722	T	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	23720260	rs2486078	T	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.26;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	23730725	rs1787653	A	C	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr1	23735241	rs1198423	G	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	23763938	rs16828486	T	G	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	23885498	rs11574	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	23885599	rs2067053	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	23908184	rs192992126	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	24018277	rs10917413	C	G	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	24082269	rs61355731	C	CA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=2.219;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr1	24106506	.	TA	T	1975.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	24106510	rs3831910	A	AT	1975.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	24123210	rs147618796	G	A	8988.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	24134721	rs719400	T	C	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	24143932	rs2076344	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	24151996	rs6697805	C	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	24172765	rs11456086	C	CT	149.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.33;ReadPosRankSum=1.370;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	24192200	rs34902309	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	24194748	rs2070956	G	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	24194773	rs2070955	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	24194788	rs2070954	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	24201911	rs61996280	C	T	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	24255844	.	C	CTATTATTATTATTAT	412.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;QD=37.52;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	24294249	rs146630384	C	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	24383819	rs7540491	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	24387822	rs7553075	T	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	24388371	rs4649168	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	24388417	rs11811060	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	24388679	rs3795303	T	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	24389509	rs67138023	GAA	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	24392600	rs6682222	G	A	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	24392671	rs6699525	T	C	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	24392796	rs10903076	C	T	1877.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-1.080;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr1	24393563	rs16829071	C	T	9392.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	24393729	rs11249090	G	A	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	24394424	rs7542151	G	A	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	24394673	rs12125641	C	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	24394811	rs12145360	A	G	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	24395003	rs6660675	T	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	24400584	rs6660949	G	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	24400633	rs10903083	C	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	24409165	rs4320728	C	T	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	24416059	rs4393101	T	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	24416133	rs4276859	C	T	4469.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-0.611;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,173:0.99:174
chr1	24417415	rs6700245	T	C	9962.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=2.173;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:2,397:0.99:399
chr1	24434595	rs11249170	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	24447801	rs35401673	T	C	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	24460797	rs17852649	T	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	24513608	rs12094257	C	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	24513768	rs4090311	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	24513924	rs66499832	AGG	A	235.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=29.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	24671287	rs4648859	C	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	24671464	.	ACCCTCCACACCTGTGCC	A	169.84	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=33.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	24673247	rs6702097	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	24673866	rs6691722	A	G	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	24684116	rs7527465	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	24684304	rs74060309	T	C	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	24687653	rs532147	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	24727678	rs2078445	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	24768778	rs4648863	G	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	24780521	rs67528293	CT	C	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.173;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,46:0.84:55
chr1	24792617	rs195725	T	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	24840768	rs196403	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	24859617	rs196429	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	24859665	rs196430	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	24861704	rs196432	G	A	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	24969973	rs376232433	AC	A	354.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=1.171;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr1	24989762	rs4649011	G	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	25140825	rs3890756	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	25153692	rs4649022	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	25234062	rs34878696	T	G	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	25254033	rs192023038	T	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr1	25254317	rs7517302	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	25291010	rs6672420	A	T	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	25549970	rs12089925	G	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	25555410	rs112795171	A	AT	37.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	25555672	rs10903036	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	25558560	rs9328945	A	G	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	25570550	rs5773124	A	AT,ATT	609.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.603;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=1.582;SOR=0.090;set=HC	GT:AD:AF:DP	1/2:6,20,13:0.51,0.33:39
chr1	25570830	rs11547	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	25573416	rs34975798	C	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	25599331	rs55812618	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	25617045	.	A	AGAAT	1419.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,52:0.95:55
chr1	25678002	rs66744254	TA	T	77.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.37;MQRankSum=-0.000;QD=8.58;ReadPosRankSum=-0.589;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr1	25678238	rs3093616	T	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	25697104	rs201639202	TTG	T	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	25715415	rs149852940	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr1	25717241	rs1132764	A	T	1290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.87;MQRankSum=-1.707;QD=44.51;ReadPosRankSum=-0.941;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr1	25717254	rs1132763	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr1	25717329	rs144163296	T	C	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	25738010	rs146768352	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	25780927	.	ATATGTGTGTG	A,ATG	294.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=12;set=Intersection	GT:AF:DP	1/1:1.00:9
chr1	25815605	rs34823920	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	25890189	rs28969504	A	G	9403.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	25890373	rs13373894	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	25893221	rs4523506	G	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	25893242	rs4418583	T	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	25944741	rs11247857	T	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	25944849	rs3767924	C	T	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	26085048	rs11321223	AG	A	3392.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	26090072	rs807270	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	26107688	rs807273	C	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	26127020	rs13373825	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	26127425	rs6659086	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	26137842	rs58522269	T	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	26138262	rs760597	T	C	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	26139294	rs59653066	C	T	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	26139392	rs3738451	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	26141974	rs58399004	G	C	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	26142181	rs74060854	G	A	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	26185597	rs7553183	G	A	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.543;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	26190046	rs61743806	G	A	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	26231363	rs35742348	GA	G	153.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	26309020	rs76876253	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	26314564	rs2245979	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	26317383	rs2992056	G	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	26349625	rs34277678	G	A	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	26349886	rs34941925	G	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	26357855	rs2802321	A	G	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	26358752	rs5773143	T	TA	2688.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.01;SOR=1.582;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	26361215	rs74985286	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	26383618	rs1317428	C	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	26383875	rs2275947	A	G	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	26385003	rs2275950	T	C	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	26385150	rs2275949	G	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	26387625	.	A	T	995.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	26440692	rs115559253	T	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	26496651	rs7087	T	C	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	26496870	rs2232654	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	26504196	rs2783707	C	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	26507394	rs74447837	G	A	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	26508480	rs2275945	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	26510357	.	AC	A	1479.73	.	AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.28;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	26510366	.	T	G	1521.77	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	26510649	rs116353873	A	T	11771.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr1	26511700	rs2783680	A	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	26514111	rs61319457	CT	C	106.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.718;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	26515956	rs1045105	C	A	17717.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:1,693:1.00:694
chr1	26517667	rs11247864	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	26524706	rs9970046	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	26527809	rs1889755	AG	CA	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	26528181	rs370678240	CTT	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.344;QD=15.81;ReadPosRankSum=-0.488;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr1	26528922	rs10902720	C	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	26594886	rs151203140	C	CTG	1709.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	26597435	rs4659419	G	A	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	26597673	rs11247894	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	26601677	rs115158031	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	26602985	rs114370465	C	G	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr1	26607632	rs116476745	T	C	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	1230.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=18.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.493;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr1	26608814	rs6672357	A	G	2235.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.58;ReadPosRankSum=-1.260;SOR=1.249;set=HC	GT:AD:AF:DP	0/1:39,60:0.61:99
chr1	26608825	.	TGGGGCCG	T	2577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=18.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.65;ReadPosRankSum=-3.137;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:39,70:0.64:109
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	2559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=20.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-2.929;SOR=1.764;set=HC	GT:AD:AF:DP	0/1:39,67:0.63:106
chr1	26609307	rs6598952	G	T	8123.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	26610891	rs4332350	A	C	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	26610971	rs116790691	C	T	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	26612042	rs11247898	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	26612296	.	C	CCG	1683.73	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	26612609	rs192300196	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	26620846	rs3832184	C	CA	6769.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	26623641	rs12129482	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	26624486	rs34916795	C	T	4588.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=1.315;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:6,177:0.97:183
chr1	26644400	rs113139025	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	26646726	rs1071849	A	G	14899.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	26646730	rs17645	A	G	14684.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	26650550	rs11247915	C	A	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	26654937	rs11589684	G	C	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	26655208	rs11247916	C	T	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	26655462	rs12057290	C	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	26655507	rs11247917	C	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	26662774	rs7517559	C	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.64;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	26663362	rs10751735	C	T	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	26664968	rs11247919	C	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	26669215	rs76952415	G	A	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr1	26671505	.	AACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACG	A	977	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MMLQ=24;NF=6;NR=8;PP=977;QD=72.2857142857;SC=GGCCCTTCACAACCTCTTTCC;SbPval=0.63;Source=Platypus;TC=23;TCF=10;TCR=13;TR=14;WE=26671563;WS=26671495;set=Platypus	GT:AD:AF:DP	1/1:9,14:0.61:23
chr1	26671522	.	GAAATGAGGCATCA	G	3734.73	.	AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=44.46;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	26671538	.	AGCAC	A	3760.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=44.77;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	3719.73	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=45.36;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	26691286	rs144078461	CCCACCGAGCGCTGGGGTGCCCCAG	C	4741.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	26698938	rs6703878	A	G	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr1	26699157	rs11247937	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr1	26700631	rs12079255	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	26700795	rs7520030	T	C	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=25.33;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	26752992	rs4659441	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	26856462	rs11800553	T	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	26869610	rs921893	G	A	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	26870730	rs1466286	C	G	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	26872554	rs12723936	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	26879376	rs7543005	T	C	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	26879792	rs4970489	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	26879920	rs4970490	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	26880989	rs873151	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	26881806	rs897641	C	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	26887150	rs34062688	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	26887592	rs1064196	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	26898142	rs188158	A	G	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	26898956	rs282176	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	26899671	rs2296399	C	G	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	26899687	rs282178	C	A	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	26900428	rs34694705	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=9.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.909;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	27100000	.	C	T	6897.77	.	AC=2;AF=1.00;AN=2;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	27210721	rs3170660	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	27320356	rs6689941	T	C	3527.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.00;ReadPosRankSum=-1.675;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:2,145:0.99:147
chr1	27426796	rs4266911	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	27427041	rs4418629	T	C	13094.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.63;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr1	27428794	rs116670694	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	27609980	rs6670124	T	G	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	27632599	rs72880901	C	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	27658812	rs116058784	T	C	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	27660568	rs35771571	G	A	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:3,294:0.99:297
chr1	27680108	rs7525750	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	27680292	rs8533	A	G	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	27684396	rs4970520	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	27686063	rs7521552	G	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	27696011	rs10218730	C	T	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	27875517	rs111827498	AAGG	A	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	27875824	rs4908364	C	T	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	27876482	rs2076457	C	A	10990.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr1	27877418	rs113173951	G	A	9305.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	27878162	rs112179924	C	T	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr1	27878341	rs141734980	G	A	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	27942176	rs2231879	T	C	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	27943308	rs761069	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	27944000	rs1292089	T	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	27949639	rs2231869	C	G	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	28058934	rs76507279	G	A	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	28058990	rs74063884	G	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	28060574	rs6670793	A	G	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	28086955	rs10902671	C	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	28116000	rs2294229	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	28146004	rs151129121	A	AT	288.75	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.43;QD=48.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	28146005	.	A	T	73	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=3;HapScore=4;MGOF=0;MMLQ=27;MQ=70.0;NF=5;NR=0;PP=73;QD=21.5542425094;SC=CTCCAAAGAAAAGGCTAGTCT;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=5;WE=28146014;WS=28146003;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	28146006	rs115963001	A	G	297.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.83;QD=37.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	28146006	.	A	AG	218	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=3;HapScore=4;MGOF=0;MMLQ=27;MQ=68.83;NF=5;NR=1;PP=218;QD=42.0;SC=TCCAAAGAAAAGGCTAGTCTC;SbPval=0.66;Source=Platypus;TC=6;TCF=5;TCR=1;TR=6;WE=28146014;WS=28146003;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	28159358	rs17162837	T	C	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	28169889	rs148565168	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	28178203	rs76335126	G	C	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	28211650	rs1467464	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	28212272	rs11247705	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	28220491	rs75048966	A	C	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	28223981	.	TAAA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	28224312	rs2295367	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	28282819	rs4908381	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	28290231	rs4373781	C	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	28365283	rs115952263	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	28369279	rs2476547	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	28374836	.	G	GA	35	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5082;HP=11;HapScore=3;MGOF=29;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=35;QD=11.0;SC=ATCAGCATGTGAAAAAAAAAA;SbPval=0.84;Source=Platypus;TC=8;TCF=3;TCR=5;TR=4;WE=28374844;WS=28374826;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr1	28422847	rs2989472	C	T	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	28422967	rs34450732	C	CT	7224.73	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:113,424:0.79:537
chr1	28527011	rs1049504	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	28536707	rs56208699	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	28537245	rs41311280	C	T	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	28555426	rs567086	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	28564252	rs8559	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	28696392	rs6703793	C	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	28733993	rs12091029	G	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	28764682	rs34320456	GT	G	810.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	28783644	rs74064847	C	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	28793041	rs11539548	G	A	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:2,472:1.00:474
chr1	28800277	rs36099122	C	A	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	28802581	rs76262433	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	28807191	rs35340518	T	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	28817351	rs146364664	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.82;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	28817355	.	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.545;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	28817597	rs10915235	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	28818151	rs61133686	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	28818418	rs74064862	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	28843271	rs139141175	CAG	C	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:39,6:0.13:45
chr1	28887031	rs10915245	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	28918992	rs12123931	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	29018316	rs10538696	TTTTA	T	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	29063559	rs6697540	A	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	29138975	rs1042114	G	T	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	29320169	.	C	CTT	66.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.39;ReadPosRankSum=-0.000;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	29342090	rs11433402	G	GA	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	29345009	rs5773229	C	CTT	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	29345027	rs2985334	T	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	29357024	rs185752229	A	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr1	29379992	rs2788888	G	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	29385486	rs2153165	G	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	29447398	.	C	A	1244.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:195,81:0.29:276
chr1	29529699	rs1062924	T	C	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:140,215:0.61:355
chr1	29542435	rs2640469	C	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	29563445	rs115246512	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr1	29587252	.	G	T	3867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.238;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:601,243:0.29:844
chr1	29602320	rs76920782	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr1	29609502	rs111595207	TG	T	2190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.39;ReadPosRankSum=-0.411;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:32,81:0.72:113
chr1	29611123	rs2281378	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	29631236	rs3831903	C	CTA	8322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.364;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:698,272:0.28:970
chr1	29637136	rs2235939	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr1	29642688	rs150059433	GGT	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.116;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr1	29842261	rs10915168	A	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.57;QD=24.28;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	29842300	.	C	CCTT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=0.891;QD=5.10;ReadPosRankSum=0.505;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	29842354	.	C	CTT	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-2.189;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:59,31:0.34:90
chr1	29842526	rs76034269	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr1	29843392	rs4995377	T	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.37;QD=23.86;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	29843419	.	T	TTCCTCC	2074.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=4.156;QD=26.94;ReadPosRankSum=-1.407;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:21,56:0.73:77
chr1	29843442	.	T	TCTTCCTCCTTCTTCCTTCTCCTTCTCCTC	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=62.82;MQRankSum=-2.455;QD=13.99;ReadPosRankSum=-0.243;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	31186254	rs1188405	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	31188019	rs56851503	T	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:66,143:0.68:209
chr1	31188089	rs1065755	C	T	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	31188901	rs20566	A	G	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	31191516	rs10914186	G	C	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	31192128	rs3790493	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	31206376	rs139954312	CACCA	C	8215.73	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:141,208:0.60:349
chr1	31206806	rs3795437	T	C	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:72,201:0.74:273
chr1	31206957	rs12404920	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	31214604	rs146237962	CT	C	2323.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr1	31230668	rs2273979	C	T	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	31347074	rs72880044	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	31347399	rs4949184	C	T	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	31351394	rs74065516	C	T	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:30,91:0.75:121
chr1	31381195	rs372912566	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.589;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	31414837	rs190258462	TC	AA	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	0/1:38,69:0.64:107
chr1	31414992	rs187689558	T	C	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:41,122:0.75:163
chr1	31415038	.	TTATATATATATA	T	461.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;QD=35.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	31440921	rs4317854	G	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	31445932	rs2491135	C	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	31446051	rs61570972	G	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	31447545	rs147524053	A	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr1	31478638	.	A	AAG	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.025;QD=13.33;ReadPosRankSum=1.884;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr1	31712314	rs12025507	C	T	8159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.705;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:143,376:0.72:519
chr1	31732390	rs6425725	G	A	109.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.68;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	31732602	rs59591825	CA	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.616;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	31733782	rs10914338	T	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.764;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	31733926	rs12121460	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr1	31740706	rs3753373	A	G	5109.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:153,252:0.62:405
chr1	31744381	rs16834326	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.211;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:121,69:0.36:190
chr1	31744505	rs113021667	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.587;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	31754511	rs4949374	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	31761989	rs1532859	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	31762374	rs1532858	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=0.967;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	31764713	rs142762586	C	CAAG	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:43,9:0.17:52
chr1	31764930	rs10733007	T	C	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	31769739	rs6660530	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.726;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr1	31811974	rs143862071	GTAACTCTACCA	G	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr1	31838909	.	ATGTGTGTGTG	A,ATGTGTG	338	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=27;MQ=60.57;NF=0,0;NR=7,7;PP=40,338;QD=6.14285714286;SC=ATATGTATGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=7,7;WE=31838926;WS=31838899;set=Platypus	GT:AF:DP	0/1:1.00:7
chr1	31840426	rs2271072	C	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr1	31882582	rs4012494	G	GGCCTCA	1801.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr1	31883295	rs6701521	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr1	31886163	rs12042883	C	T	5328.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:159,261:0.62:420
chr1	31886833	rs10914377	T	C	4841.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:153,236:0.61:389
chr1	31897493	rs1320585	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr1	31899684	rs10454445	A	T	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chr1	31899704	rs10454446	C	T	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:44,72:0.62:116
chr1	31902418	rs10047085	A	G	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:114,194:0.63:308
chr1	31905889	rs3050461	A	ACAG	3977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.619;QD=9.27;ReadPosRankSum=2.376;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:310,119:0.28:429
chr1	31906077	rs76629576	G	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.158;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.431;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:109,43:0.28:152
chr1	31906882	rs11587589	A	G	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	31907102	rs7417775	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	31971684	rs1316427	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr1	31971701	rs201612393	GC	G	871.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	31971707	rs35567548	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	31973122	rs112889748	GTGGAGTCTGTC	G	1047.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.182;QD=4.83;ReadPosRankSum=1.684;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:179,38:0.18:217
chr1	31973138	rs56235358	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.250;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.082;QD=5.28;ReadPosRankSum=0.594;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:167,39:0.19:206
chr1	31973215	rs1320577	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:109,40:0.27:149
chr1	31973266	rs10753250	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,49:0.33:150
chr1	31973336	rs182055777	G	A	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:71,197:0.74:268
chr1	31973348	rs1574106	A	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=2.399;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:204,74:0.27:278
chr1	31973409	rs1574105	G	A	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-2.597;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:191,77:0.29:268
chr1	31973440	rs1574104	G	A	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.940;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:139,59:0.30:198
chr1	31973481	rs1573837	C	T	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.098;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr1	32044641	.	G	A	324	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=3;HapScore=2;MGOF=59;MMLQ=20;MQ=55.7;NF=14;NR=3;PP=324;QD=21.1041889734;SC=TTCAGTTATAGTTTAATTTCA;SbPval=0.59;Source=Platypus;TC=17;TCF=14;TCR=3;TR=17;WE=32044649;WS=32044631;set=Platypus	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	32045800	rs12067484	C	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=0.373;QD=7.79;ReadPosRankSum=-0.458;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	32045855	rs148621288	T	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=0.551;QD=15.24;ReadPosRankSum=3.062;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	32119347	rs376725697	AAC	A	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=6.449;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.209;QD=2.15;ReadPosRankSum=0.342;SOR=2.168;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr1	32136182	rs373328488	C	T	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-1.050;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:155,84:0.35:239
chr1	32145009	rs4949461	C	T	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	32145767	rs77096287	C	T	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:59,123:0.68:182
chr1	32146425	rs11590964	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr1	32148571	rs10737358	A	G	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	32154000	rs113905439	C	T	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:98,192:0.66:290
chr1	32155284	rs2297682	T	C	5607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.145;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:102,261:0.72:363
chr1	32155463	rs75020493	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,74:0.67:111
chr1	32155911	rs6425780	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	32156869	rs10798884	A	T	20342.77	.	AC=2;AF=1.00;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	1/1:0,768:1.00:768
chr1	32156940	rs2297680	C	A	2810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.182;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:556,195:0.26:751
chr1	32157009	rs2297679	G	T	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.530;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:387,137:0.26:524
chr1	32158304	rs2297675	A	G	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:364,154:0.30:518
chr1	32158374	rs3818788	T	C	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	32158491	rs74063963	A	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr1	32158858	rs74063964	C	T	5119.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:132,248:0.65:380
chr1	32159588	rs2275097	A	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	32160918	rs6656079	A	G	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	32161032	rs6692308	C	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	32163950	rs2297674	G	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	32164206	rs2228550	T	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	32167526	rs1815465	G	C	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	32193647	rs1127100	T	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:283,126:0.31:409
chr1	32196647	rs909001	C	G	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:143,79:0.36:222
chr1	32202408	rs112521624	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=1.335;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr1	32204063	rs2280387	C	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:317,109:0.26:426
chr1	32207581	rs2297600	T	G	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:317,170:0.35:487
chr1	32259509	rs74065942	C	T	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,55:0.36:152
chr1	32264016	rs74065946	C	T	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:173,97:0.36:270
chr1	32280610	rs6664445	T	C	6205.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:123,278:0.69:401
chr1	32378540	rs10493050	G	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:105,45:0.30:150
chr1	32499073	rs16834833	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.37;ReadPosRankSum=-2.308;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	32541464	rs28495454	T	C	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=0.327;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr1	32542507	rs4317856	C	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr1	32557486	rs744455	A	G	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr1	32626130	rs148103875	TG	T	1153.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	32646066	rs76778931	A	G	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:26,118:0.82:144
chr1	32655957	rs10551696	TTCC	T	644.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=40.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	32657890	rs111872940	G	A	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	32658062	rs79952364	G	GGT	4684.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	32658919	rs112871919	C	T	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	32660697	rs75073861	C	G	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:81,239:0.75:320
chr1	32672908	rs3903683	T	G	12886.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr1	32674627	rs60252907	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	32682228	rs142470749	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr1	32689521	rs16834931	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	32689857	rs589034	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	32696702	rs79086471	C	T	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr1	32714193	rs35660601	C	T	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-1.219;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:59,108:0.65:167
chr1	32829888	rs78345370	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:75,109:0.59:184
chr1	32860161	rs547329	T	C	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr1	33060834	rs11327743	AT	A	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.515;QD=1.17;ReadPosRankSum=2.101;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr1	33065947	rs704886	G	C	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	33099798	rs704877	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	33117071	rs583114	T	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	33127730	rs1085416	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	33133968	rs2762904	T	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	33134774	rs359955	A	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr1	33134989	rs359956	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	33146113	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-3.041;QD=0.86;ReadPosRankSum=0.034;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	33160878	rs360042	C	T	9424.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	33161212	rs360041	T	C	23131.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:0,901:1.00:901
chr1	33233323	rs360523	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	33234110	rs111335810	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	33234136	rs360522	T	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	33234153	rs3737993	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	33236043	rs76655814	C	G	6559.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:184,322:0.64:506
chr1	33276424	rs4951787	G	A	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	33293748	rs10753266	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	33299816	rs4951773	A	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	33318561	rs702836	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	33318634	rs785274	G	A	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	33330432	rs1284368	A	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	33409551	rs194644	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr1	33430347	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr1	33479986	rs144483414	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-1.967;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	33485789	rs368557594	AACACACACAC	A	3317.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:34,100:0.75:134
chr1	33485805	.	C	T	1976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=2.624;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:34,70:0.67:104
chr1	33497070	rs1012884	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	33497377	rs12095142	T	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:116,65:0.36:181
chr1	33547750	rs116730956	G	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-3.006;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:56,28:0.33:84
chr1	33547768	rs1871322	T	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr1	33548039	rs77442782	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	33549524	rs112142445	G	A	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:45,114:0.72:159
chr1	33557850	.	GCTGGGCTGTGGGGAGC	G	1225.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	33558992	rs80137217	C	A	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:101,213:0.68:314
chr1	33559144	rs78433016	T	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr1	33560338	rs804428	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	33562515	rs59666809	T	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr1	33631069	rs2306257	C	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.737;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:15,40:0.73:55
chr1	33641932	rs604941	A	G	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	33642152	rs643402	C	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	33646950	rs622407	A	G	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	33741615	rs7514338	T	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:95,42:0.31:137
chr1	33742228	rs4475712	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	33746163	rs10914676	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	33760743	rs4641276	T	C	24977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=1.512;SOR=0.232;set=HC	GT:AD:AF:DP	1/1:1,952:1.00:953
chr1	33773016	rs181569269	G	A	11352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-1.179;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:217,529:0.71:746
chr1	33777524	rs6679416	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	33777557	rs139835808	A	G	4678.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:102,222:0.69:324
chr1	33777726	rs143584494	C	T	7774.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:202,362:0.64:564
chr1	33778226	rs12563102	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	33778591	rs6664593	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	33832865	rs6425816	A	G	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	33832933	rs10914692	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:104,43:0.29:147
chr1	33836796	rs7545416	C	G	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	33957152	rs4403594	T	G	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	33959771	rs72885577	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:203,75:0.27:278
chr1	33960062	rs9943259	A	G	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	33961147	rs3795420	T	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	33985353	rs2641959	C	G	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr1	33992812	rs111577457	C	T	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:45,128:0.74:173
chr1	33998846	rs116604185	A	G	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:64,135:0.68:199
chr1	34002964	.	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.959;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	34008297	rs1000418	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr1	34008489	rs147270632	A	G	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-3.366;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:156,70:0.31:226
chr1	34015796	rs61734268	G	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,97:0.70:138
chr1	34025232	rs149952986	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.096;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	34033512	rs6703172	G	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	34042858	rs1389559	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.609;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	34043169	rs11291100	TC	T	2213.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	34052605	rs7526990	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.537;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	34070826	rs12733436	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	34071434	rs1874044	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	34071525	rs1874045	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	34112303	rs10798976	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr1	34189917	rs519370	C	T	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.792;QD=3.01;ReadPosRankSum=-0.003;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:104,33:0.24:137
chr1	34189957	rs11346874	AG	A	2357.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	34190151	rs148442030	G	A	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.213;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:336,144:0.30:480
chr1	34204976	rs111240185	G	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr1	34238283	rs474474	T	C	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:58,108:0.65:166
chr1	34270498	rs10737374	G	A	8188.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	34276210	.	T	TA	35	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5002;HP=12;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=35;QD=15.6666666667;SC=TCGATATTAATAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=3;WE=34276218;WS=34276208;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr1	34285342	rs17342512	G	A	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,101:0.64:158
chr1	34285381	rs11578857	C	T	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:70,164:0.70:234
chr1	34285995	rs3795414	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr1	34329897	rs911218	T	C	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	34330067	rs10379	A	C	11775.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr1	34330200	rs74067992	C	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:204,102:0.33:306
chr1	34383662	rs12029535	T	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr1	34401453	rs16836099	A	G	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:69,178:0.72:247
chr1	34631200	rs150837376	AAC	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.053;QD=2.98;ReadPosRankSum=-0.582;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr1	34663180	rs3795412	G	A	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:122,258:0.68:380
chr1	34663208	rs1382602	C	G	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	34663411	rs1414474	C	G	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:155,275:0.64:430
chr1	34673586	rs58789216	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr1	34673701	rs41266413	A	C	11089.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	34677815	rs61741807	T	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:193,87:0.31:280
chr1	34684463	rs705207	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	35135315	rs2147385	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	35183838	rs683589	A	C	1727.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	35184033	rs693582	C	T	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	35184084	rs693852	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	35223345	rs3738345	G	A	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	35223881	rs1061349	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	35227350	rs147912521	C	T	10738.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:200,494:0.71:694
chr1	35227673	rs755931	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	35251161	rs35983826	C	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:47,122:0.72:169
chr1	35251229	rs476220	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	35259946	rs1764389	G	A	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:428,209:0.33:637
chr1	35259961	rs1764390	A	G	22240.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr1	35260769	rs1764391	C	T	15219.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr1	35260929	rs3543	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	35320690	rs8621	T	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:168,76:0.31:244
chr1	35333126	rs12727066	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:171,91:0.35:262
chr1	35441978	rs145645334	A	C	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,110:0.67:164
chr1	35442779	rs72896074	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:165,80:0.33:245
chr1	35447598	rs3892091	C	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:87,49:0.36:136
chr1	35449447	rs114821631	C	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:80,149:0.65:229
chr1	35451017	rs72907569	C	T	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	35452986	rs16837147	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr1	35457656	rs12078105	G	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	35469361	rs7529201	A	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	35470650	rs10647049	A	ACT	2642.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	35475943	rs9919282	C	G	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	35476336	rs6701413	T	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,14:0.23:60
chr1	35477551	rs35847987	T	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:178,86:0.33:264
chr1	35480162	rs3820462	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	35484861	rs11263938	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	35485300	rs12058423	C	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	35486072	rs11476047	TA	T	458.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	35561510	rs2101973	G	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-3.908;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr1	35562965	rs2971408	G	A	11958.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	35563206	rs6658571	C	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:76,47:0.38:123
chr1	35570043	rs77739907	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr1	35575835	rs80055608	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	35576145	rs2935955	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	35580406	rs61736097	A	G	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-2.277;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr1	35649970	rs72908970	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-1.586;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr1	35652770	rs3738697	C	G	5600.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:110,263:0.71:373
chr1	35652941	rs6702141	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr1	35653480	rs67796063	CTG	C	996.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr1	35653759	rs182117116	C	A	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:57,120:0.68:177
chr1	35653783	rs4652873	G	C	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	35654725	rs10908385	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr1	35654765	rs2088481	G	A	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	35654777	rs2088482	G	A	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	35656064	rs11264114	T	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	35656664	rs11264115	G	A	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr1	35656709	rs72908993	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	35657256	rs12040066	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	35657874	rs118141562	G	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.79;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	35851640	rs16837315	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr1	35852521	rs615315	G	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	35854722	rs148553577	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	35879719	rs192177264	T	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr1	35900615	rs3814302	A	G	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	35900725	rs10157108	A	C	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:18,64:0.78:82
chr1	35908451	rs2275247	T	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	35921595	rs369915733	AG	A	2474.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr1	35925861	rs2819002	C	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	35926150	rs1768560	T	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	35944886	rs7545232	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	35972297	rs199549282	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:147,70:0.32:217
chr1	36029343	rs12094935	C	T	11256.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:263,532:0.67:795
chr1	36031342	rs58718331	T	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	36032617	rs2107782	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	36039962	rs2301902	T	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr1	36053911	rs41312639	C	T	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.528;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:243,98:0.29:341
chr1	36054136	rs138447850	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr1	36055715	.	GTC	G	191.73	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:58,10:0.15:68
chr1	36056416	rs113333244	T	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:190,103:0.35:293
chr1	36056527	rs112930708	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	36068790	rs16866306	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.443;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	36068833	rs60768546	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr1	36068863	rs12386	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr1	36074775	rs61014303	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	36202585	rs35490896	G	A	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:41,130:0.76:171
chr1	36203714	.	AATATAT	A	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.659;QD=2.04;ReadPosRankSum=3.051;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr1	36204866	rs6687290	A	G	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:143,265:0.65:408
chr1	36205166	rs577483	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr1	36213712	rs516992	G	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	36214421	.	CTT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.23;ReadPosRankSum=1.102;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	36216835	rs535638	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	36225948	rs7537203	T	C	3866.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:91,176:0.66:267
chr1	36227898	rs147648474	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr1	36282399	.	CAA	C	460.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.234;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	36282417	rs2791960	A	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.240;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:42,30:0.42:72
chr1	36291750	rs72659690	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr1	36292258	rs72659692	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	36298019	.	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.134;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr1	36307412	.	CATATAT	C	393.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=39.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	36316396	rs191533563	A	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.100;QD=5.34;ReadPosRankSum=0.097;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr1	36316418	rs11403763	C	CA	2175.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.062;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.078;QD=20.92;ReadPosRankSum=-0.566;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr1	36359669	rs2296470	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	36367780	rs595961	A	G	9979.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr1	36396911	.	C	A	1592.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr1	36553673	rs399393	A	G	8039.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	36557619	rs2236387	G	A	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:389,182:0.32:571
chr1	36563158	rs3738360	C	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr1	36563797	rs35495320	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr1	36565584	rs274753	C	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	36602943	rs2231318	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	36603770	rs114981457	C	A	6456.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:152,299:0.66:451
chr1	36614745	.	T	G	1146.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr1	36621909	rs371643371	TGCCGG	T	817.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr1	36636934	rs513215	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr1	36638015	rs144150224	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-0.555;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	36641985	rs189678494	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.051;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr1	36642243	rs550145	G	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=11.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.096;SOR=1.772;set=HC	GT:AD:AF:DP	0/1:107,27:0.20:134
chr1	36642420	rs475591	T	C	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	36644432	rs142470160	C	CGGCG	2184.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	36644676	rs368274165	C	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,63:0.82:77
chr1	36645178	rs142429998	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:512,183:0.26:695
chr1	36752687	rs58840555	A	G	8712.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:187,404:0.68:591
chr1	36755381	rs115280424	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr1	36755430	rs114423930	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	36762396	rs1566589	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	36773819	rs11263871	C	G	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:74,178:0.71:252
chr1	36788356	rs7536394	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	36793739	rs115986546	G	A	7098.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:169,317:0.65:486
chr1	36819930	rs57177729	G	T	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:52,115:0.69:167
chr1	36820752	rs58286007	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	36820783	rs61525539	C	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.050;SOR=1.564;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	36884530	.	GA	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.601;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr1	36886117	rs2275477	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,83:0.64:130
chr1	36886364	rs2275478	C	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	36887702	rs2236565	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr1	36889197	rs11263892	T	C	488.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=7.005;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=0.586;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr1	36894086	.	CACAA	C	6570.73	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:76,166:0.69:242
chr1	36909753	rs7519327	G	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	36921371	rs1538634	G	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:134,60:0.31:194
chr1	36926445	rs3738839	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-3.184;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:142,53:0.27:195
chr1	36927733	rs7065	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	37267690	rs114081680	T	C	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:46,79:0.63:125
chr1	37271688	rs114864586	G	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr1	37272050	rs75166663	A	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr1	37282609	rs57284831	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	37282884	rs3012032	C	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:4,155:0.97:159
chr1	37319339	rs72913542	G	A	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.342;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:172,69:0.29:241
chr1	37324683	rs3738081	A	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr1	37324935	rs12067006	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr1	37325477	rs6691840	A	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.896;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:167,58:0.26:225
chr1	37325723	rs12082412	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr1	37335458	rs577094	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	37335485	rs509284	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.35;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	37335494	rs577813	G	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=2.265;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	37338062	.	ATGGCCACAGG	A	784.73	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr1	37626981	rs215756	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	37627291	rs74065067	C	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,61:0.75:81
chr1	37959450	rs215210	T	C	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	37959470	rs215211	C	G	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	37961285	.	C	CA	429.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	37961298	rs2783732	C	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	37961308	rs200110144	A	C	822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.863;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.47;ReadPosRankSum=1.160;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	37967707	.	ATTGACAGAGAAGATACATG	A	1434	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=10;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=1434;QD=501.839957486;SC=CTATCCTCTAATTGACAGAGA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=3;WE=37967733;WS=37967697;set=Platypus	GT:AD:AF:DP	1/1:6,3:0.33:9
chr1	37975279	rs215214	C	T	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	37975312	rs2036637	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	38006359	rs2174769	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	38022452	rs2273014	C	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	38030696	rs6619	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	38046920	rs2360010	G	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	38049373	rs3753372	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	38049552	rs6426024	C	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	38052867	rs11420067	C	CA,CAA	1473.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.732;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.236;SOR=0.232;set=HC	GT:AD:AF:DP	1/2:8,52,28:0.59,0.32:88
chr1	38061572	rs6697632	G	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	38078300	rs4652964	A	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	38148765	rs684260	A	G	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:67,126:0.65:193
chr1	38148785	rs146821670	C	G	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:70,140:0.67:210
chr1	38161694	rs615530	A	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:55,121:0.69:176
chr1	38161732	rs200452767	CTGTT	C	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr1	38164438	rs3842536	GC	G	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	38164724	rs557290	C	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:44,125:0.74:169
chr1	38166022	rs513826	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr1	38166327	rs661460	A	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	38167345	rs71701232	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.988;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	38173983	rs145033890	TTTC	T	7481.73	.	AC=1;AF=0.500;AN=2;DB;DP=521;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:152,356:0.70:508
chr1	38174185	rs557897	G	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	38192825	rs34409053	G	A	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:83,179:0.68:262
chr1	38197152	rs35063879	C	T	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:62,158:0.72:220
chr1	38226976	rs57449203	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:33,114:0.78:147
chr1	38227086	rs4653328	A	T	7855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.435;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:143,381:0.73:524
chr1	38274713	rs61745801	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:228,102:0.31:330
chr1	38292296	.	C	CT	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.768;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:98,43:0.30:141
chr1	38293992	rs9329568	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr1	38301478	.	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.709;QD=1.34;ReadPosRankSum=-1.876;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr1	38328154	rs28542272	G	T	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr1	38332074	rs149926262	TCTCTCACA	T	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=3.78;ReadPosRankSum=3.805;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:88,40:0.31:128
chr1	38397524	rs61751228	C	T	5951.77	.	AC=1;AF=0.500;AN=2;DB;DP=1099;set=Intersection	GT:AD:AF:DP	0/1:739,348:0.32:1087
chr1	38409395	rs114328240	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:196,86:0.30:282
chr1	38411275	rs61776701	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr1	38411527	rs61751229	G	A	2926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.385;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:427,181:0.30:608
chr1	38423853	rs9293	G	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	38425724	rs17531342	T	C	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	38425895	rs28675056	T	C	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	38442547	rs10890216	G	A	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	38444749	rs7555461	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	38445214	rs7518337	A	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.269;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr1	38446513	.	CTTTT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.59;ReadPosRankSum=-1.345;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	38446545	.	G	T	58	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=2;MGOF=27;MMLQ=27;MQ=59.2;NF=0;NR=5;PP=58;QD=18.5542425094;SC=TTTTGAGGCAGAGTTTCGCTC;SbPval=1.0;Source=Platypus;TC=16;TCF=3;TCR=13;TR=5;WE=38446553;WS=38446535;set=Platypus	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	38447615	rs7533079	G	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	38449910	rs11210870	T	C	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:90,160:0.64:250
chr1	38450367	rs6680796	A	G	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr1	38453576	rs10890285	A	C	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:103,196:0.66:299
chr1	38455389	rs3935867	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	38462898	rs4274021	T	A	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.95;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	38462905	rs12724533	C	G	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.35;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	38463042	rs146599448	GTGGTATGGGAAAGCC	G	3827.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:50,97:0.66:147
chr1	38463504	rs7366048	C	T	16234.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:1,616:1.00:617
chr1	38464639	rs4570384	C	G	14568.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr1	38488506	rs34251728	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.847;QD=1.54;ReadPosRankSum=1.326;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr1	38554876	rs111227048	TG	T	706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.85;MQRankSum=4.950;QD=24.37;ReadPosRankSum=-0.045;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	38554877	.	G	T	533	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=19;MQ=65.83;NF=8;NR=5;PP=533;QD=43.6747086575;SC=GTCCTTGTGTGTGGATGCACA;SbPval=0.4;Source=Platypus;TC=19;TCF=13;TCR=6;TR=13;WE=38554886;WS=38554867;set=Platypus	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	38554878	.	TG	T	541	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=3;HapScore=4;MGOF=2;MMLQ=25;MQ=65.19;NF=3;NR=6;PP=541;QD=63.0;SC=TCCTTGTGTGTGGATGCACAC;SbPval=0.28;Source=Platypus;TC=14;TCF=7;TCR=7;TR=9;WE=38554886;WS=38554867;set=Platypus	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	38554879	rs58437512	G	T	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.99;MQRankSum=5.044;QD=23.86;ReadPosRankSum=-0.259;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	38555026	rs6671895	C	T	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.679;QD=14.40;ReadPosRankSum=-0.428;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:27,63:0.70:90
chr1	38555083	rs531013	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	39339007	rs116600579	C	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:170,73:0.30:243
chr1	39353456	rs184973838	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	39353617	rs12074017	G	C	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.262;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:44,79:0.64:123
chr1	39361569	rs12085567	G	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr1	39385086	rs7522863	A	C	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr1	39395107	rs75563930	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.316;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:316,92:0.23:408
chr1	39457006	rs12043492	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	39494666	rs35464164	C	CT	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.738;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:16,31:0.66:47
chr1	39494687	rs3768323	G	A	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	39549983	rs3736890	G	A	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:126,216:0.63:342
chr1	39550210	rs260972	C	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	39568249	rs6667815	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	39568765	rs2282232	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	39571211	rs13374459	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr1	39717566	rs2490948	T	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	39734734	rs74066725	T	G	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:46,112:0.71:158
chr1	39748921	rs2275188	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.100;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr1	39763242	rs2275187	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:192,56:0.23:248
chr1	39766055	rs2275186	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr1	39766138	rs59075192	TA	T	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	39784066	rs16826064	A	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-0.679;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	39784358	rs57633065	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	39799679	rs16826077	T	C	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:76,130:0.63:206
chr1	39806610	rs3116396	C	T	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	39812620	rs2490944	G	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	39812822	rs2761764	C	A	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	39824718	rs2256614	C	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	39826391	rs10632223	A	ATTAT	712.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.36;ReadPosRankSum=1.458;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	39843958	rs663449	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	39879250	.	A	ACCTCCCCAGCTGCTGCAGTGCCCACCCCAGAGGAGCCCG	551.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr1	39880267	rs56278340	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	39889677	rs663892	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr1	39893093	rs625384	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr1	39894839	rs645061	A	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	39895460	rs683135	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr1	39906659	rs10489935	A	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr1	39908506	rs587404	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr1	39908726	rs588326	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	39914363	rs668556	G	C	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.208;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:77,122:0.61:199
chr1	39919616	rs6671001	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	39927463	.	CAAAAAAA	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=7.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.637;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	39927507	rs783820	G	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	39929162	.	C	CA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=0.821;QD=5.47;ReadPosRankSum=-0.492;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	39929240	rs7554206	T	C	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:150,95:0.39:245
chr1	39929416	rs6687066	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr1	39950377	rs72930231	C	T	4789.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:84,224:0.73:308
chr1	39957913	rs4660269	A	G	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=1.805;QD=6.84;ReadPosRankSum=1.415;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr1	39958080	rs10888798	C	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.704;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	39976930	rs201515760	C	T	118.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=19.67;ReadPosRankSum=-0.210;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	39976974	rs202230393	C	T	54.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=13.70;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	39977348	rs115901769	C	A	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.98;MQRankSum=-0.862;QD=8.23;ReadPosRankSum=-0.271;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr1	39980582	rs145284888	A	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.89;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	39987183	rs139271312	G	A	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	39988145	rs6524	T	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:223,100:0.31:323
chr1	39991474	rs11583829	AG	CA	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;JOINED;set=Intersection	GT:AD:AF:DP	0/1:347,135:0.28:482
chr1	40092089	rs2695320	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	40096053	rs1148945	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	40098328	rs784625	T	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	40131181	rs784594	G	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr1	40137437	rs150643227	AGCT	A	4283.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:60,108:0.64:168
chr1	40137480	rs187770022	C	A	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.942;QD=4.95;ReadPosRankSum=0.450;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:260,116:0.31:376
chr1	40149515	rs784633	A	G	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	40149642	rs784634	G	T	9827.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr1	40149870	rs113763288	C	G	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=2.797;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	40149875	rs113459798	C	T	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=2.917;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	564.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.06;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	40150156	rs9662128	G	A	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	40150311	rs2676702	G	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.213;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr1	40150370	rs2746058	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	40204802	rs140607790	ACTT	A	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	40207169	rs497333	T	G	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,103:0.66:157
chr1	40229393	.	G	A	229	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=49.35;NF=14;NR=3;PP=229;QD=15.5159536792;SC=CCAGCCAGCCGAGGTCCTGGA;SbPval=0.96;Source=Platypus;TC=63;TCF=40;TCR=23;TR=17;WE=40229401;WS=40229383;set=Platypus	GT:AD:AF:DP	1/0:46,17:0.27:63
chr1	40229616	rs202005319	T	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	40230336	rs76376226	C	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,88:0.49:181
chr1	40235277	rs374340047	A	G	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	40236074	rs230321	A	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	40253768	rs60164088	C	CA	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	40253770	rs4068800	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr1	40253786	rs230329	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-1.574;QD=5.96;ReadPosRankSum=0.316;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr1	40253810	rs56694047	GC	G	1224.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr1	40253812	rs57439527	G	A	1233.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr1	40254074	.	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-1.455;QD=6.25;ReadPosRankSum=2.029;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	40315716	rs3738672	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	40318604	rs76706459	T	C	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:56,117:0.68:173
chr1	40319587	rs2294814	A	C	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:72,153:0.68:225
chr1	40349131	rs3845570	G	A	3412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=0.979;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:48,157:0.77:205
chr1	40363054	rs3134614	G	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	40363759	rs11279387	TTAGATATA	T	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr1	40367592	rs804719	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	40424237	rs113856758	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	40432949	rs74067887	G	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	40526003	rs3122419	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.070;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	40528192	.	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-4.925;QD=2.48;ReadPosRankSum=-1.201;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	40528445	rs111329903	T	TTGTGTG,TTGTGTGTGTGTG,TTGTGTGTGTGTGTG	562.73	.	AC=2,0,0;AF=1.00,0.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:1.00:9
chr1	40533266	rs11207440	T	G	17776.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	40533287	rs6665926	T	G	19009.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:3,470:0.99:473
chr1	40533315	rs6665933	T	G	20116.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=44.21;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr1	40533320	rs6665936	T	G	19977.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=44.89;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr1	40533326	rs6665937	T	G	19476.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=45.51;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	40533347	rs6665944	T	G	17418.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	40535675	rs74068028	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	40536074	rs58190778	C	CT	7570.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	40536958	.	C	T	562.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:76,34:0.31:110
chr1	40539874	rs367820578	T	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.862;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr1	40545964	rs3122428	T	G	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	40556922	rs3122439	T	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	40557089	rs143235344	G	C	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:62,107:0.63:169
chr1	40558256	rs4481840	C	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	40559705	rs77588241	A	C	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.643;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:72,49:0.40:121
chr1	40701378	rs2235985	T	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	40705726	rs10889205	A	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:55,110:0.67:165
chr1	40717299	rs72939333	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:95,37:0.28:132
chr1	40733658	rs7516571	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	40737516	rs6677717	T	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	40758400	rs193076795	C	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr1	40767392	rs74541133	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr1	40767426	rs75924208	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr1	40767578	rs6674856	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr1	40768344	rs3737821	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:98,45:0.31:143
chr1	40768445	.	TC	T	683	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=1;MGOF=18;MMLQ=24;MQ=59.97;NF=6;NR=10;PP=683;QD=45.7519312419;SC=ACCCAGGGCTTCCCGCTTGGC;SbPval=0.27;Source=Platypus;TC=59;TCF=16;TCR=43;TR=16;WE=40768453;WS=40768435;set=Platypus	GT:AD:AF:DP	0/1:43,16:0.27:59
chr1	40768483	rs144651070	TGGAGGGAG	T	1666.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr1	40768625	rs3737819	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	40769047	rs142298117	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.548;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr1	40769174	rs76810153	G	T	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.868;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:303,124:0.29:427
chr1	40769434	.	T	TGGGGCCGGGAGAAGGGAGG	1392.73	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:99,36:0.27:135
chr1	40769910	rs116231529	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr1	40770425	rs72944910	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr1	40770730	rs202104002	TTTC	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.692;QD=5.93;ReadPosRankSum=-0.703;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	40771808	rs79627294	G	A	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.983;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:276,87:0.24:363
chr1	40771994	rs2281399	G	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-1.173;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:176,69:0.28:245
chr1	40773149	rs2228564	T	C	1286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-1.437;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:268,93:0.26:361
chr1	40775767	rs77550258	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:43,111:0.72:154
chr1	40777800	rs1979785	T	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.583;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:71,37:0.34:108
chr1	40777842	rs209918	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr1	40777884	rs34036643	C	CT	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.830;SOR=1.583;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr1	40781175	rs111700365	CG	C	4340.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.778;QD=7.95;ReadPosRankSum=1.995;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:410,136:0.25:546
chr1	40781177	rs115504008	A	C	1682.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.781;QD=3.12;ReadPosRankSum=2.173;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:411,129:0.24:540
chr1	40840249	.	T	TTGCG	479	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=36;MMLQ=17;MQ=58.42;NF=8;NR=14;PP=479;QD=22.3181818182;SC=ATGAACTGCATTGCGTGCGTG;SbPval=0.67;Source=Platypus;TC=28;TCF=11;TCR=17;TR=22;WE=40840257;WS=40840239;set=Platypus	GT:AD:AF:DP	1/0:6,22:0.79:28
chr1	40840270	rs10645094	T	TGC	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=0.188;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	40840272	rs28621835	T	C	352.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.821;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr1	40840273	.	G	GTT	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.471;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr1	40840275	.	G	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.311;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr1	40840296	rs4561032	T	A,TGAGA	2041.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.12;ReadPosRankSum=-1.360;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:10,17,28:0.31,0.51:55
chr1	40840353	rs1003710	A	G	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:59,119:0.67:178
chr1	40872623	rs2982510	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	40879808	rs209605	G	T	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	40879952	rs2294752	T	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:63,125:0.66:188
chr1	40881041	rs209606	C	G	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	40961449	rs3795348	T	C	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	40980731	rs11208299	G	T	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	40981230	rs3795344	G	A	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	40998902	rs1001400	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	41094320	rs2076334	C	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	41094964	rs561024	G	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:145,58:0.29:203
chr1	41095171	rs2076333	A	G	243.96	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr1	41101572	rs2253835	A	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr1	41107360	rs491619	T	C	24320.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=957;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=1.383;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,944:1.00:946
chr1	41107568	rs666631	T	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:116,41:0.26:157
chr1	41107612	rs2076332	C	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr1	41204569	rs1057925	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr1	41215165	rs142339790	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr1	41218788	rs149423225	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.766;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr1	41223876	rs61743552	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:109,56:0.34:165
chr1	41229180	rs4660455	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	41235177	rs10889608	G	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr1	41282919	rs13374844	C	T	9975.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.865;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.53;ReadPosRankSum=0.104;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:1,223:1.00:224
chr1	41282919	.	CTC	TTT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=22;MQ=59.99;NF=75;NR=38;PP=2947;QD=20;SC=AACCCTCTCCCTCATGTTGTA;SbPval=0.56;Source=Platypus;TC=120;TCF=79;TCR=41;TR=113;WE=41282929;WS=41282909;set=Platypus	GT:AD:AF:DP	1/1:7,113:0.94:120
chr1	41282921	rs13374845	C	T	9975.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=3.837;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.34;ReadPosRankSum=0.222;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:1,224:1.00:225
chr1	41284119	rs2296838	C	G	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	41284366	rs2361660	G	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	41284406	rs2361659	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	41285087	rs4660468	T	C	17633.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr1	41286109	rs79552281	C	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	41298652	rs913378	T	C	5861.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:155,273:0.64:428
chr1	41327230	.	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.014;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr1	41327873	rs12081504	G	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=-1.034;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	41447450	.	C	G	429.56	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr1	41450389	rs78630393	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr1	41453286	rs5773721	GT	G	2671.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,85:0.69:124
chr1	41456808	rs111518708	C	CT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.302;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr1	41540853	rs2011981	A	T	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.31;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	41540861	rs2011982	T	C	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=41.51;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	41618442	rs213768	A	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	41847881	.	C	CGGGACGCCCGCCTACTTCGGCGGCTG	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=1.251;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	41949595	rs2759256	G	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	41949628	rs2759257	A	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	41950312	rs2984691	T	C	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	41976217	rs72669005	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr1	41976328	rs9439043	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	41976529	rs11809423	C	T	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:343,162:0.32:505
chr1	41976652	rs144759096	C	T	6727.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:111,308:0.74:419
chr1	41976943	rs115049022	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	41978566	rs2991344	T	G	2057.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=-0.852;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr1	41978825	rs2483689	C	G	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	41978953	rs79791594	G	T	2036.73	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:279,126:0.31:405
chr1	41979156	rs615177	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr1	41979433	rs149079572	C	T	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.074;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:336,135:0.29:471
chr1	41983912	rs2810547	C	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr1	42046812	rs2810565	C	T	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	42048745	rs2810566	T	C	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	42049032	rs2984694	G	A	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	42049140	rs2475842	C	G	9502.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	42049422	rs141636566	G	C	5439.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:146,257:0.64:403
chr1	42050366	rs2146315	C	T	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:69,160:0.70:229
chr1	42619139	rs1047047	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:127,51:0.29:178
chr1	42628571	rs12076081	G	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:231,108:0.32:339
chr1	42628662	rs78739446	C	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:184,80:0.30:264
chr1	42629040	rs2232224	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:44,11:0.20:55
chr1	42647536	.	T	TCA	198.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	42654359	rs11799854	C	T	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-1.788;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr1	42693597	rs343376	A	G	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	42730720	rs11811225	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr1	42776699	rs200511460	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=2.010;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	42846786	rs11210626	G	C	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:42,136:0.76:178
chr1	42865468	rs56751964	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.35;ReadPosRankSum=0.022;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	42870338	rs1105670	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	42880516	rs1055055	T	C	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chr1	42896619	rs11803844	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr1	42898843	rs1034268	A	G	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:50,140:0.74:190
chr1	42901082	rs3748845	A	C	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr1	42901173	rs4660634	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	42915753	rs11210647	T	C	5479.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:91,255:0.74:346
chr1	42948585	rs6656344	C	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr1	43002199	rs372826618	AAG	A	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-2.417;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:310,40:0.11:350
chr1	43002744	rs4660643	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr1	43008475	.	C	T	450.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr1	43110276	rs7523056	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	43124626	rs113377687	G	A	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.941;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:239,90:0.27:329
chr1	43124701	rs6600419	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-2.373;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:81,36:0.31:117
chr1	43124859	rs3738494	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:234,93:0.28:327
chr1	43148819	.	C	G	2847.77	.	AC=1;AF=0.500;AN=2;DP=506;set=Intersection	GT:AD:AF:DP	0/1:312,170:0.35:482
chr1	43162182	rs113762321	GC	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.569;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	43201534	rs4660658	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:67,25:0.27:92
chr1	43201614	rs9660973	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.221;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr1	43212291	rs13871	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.945;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	43212431	rs4660662	A	G	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr1	43212926	rs67014447	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:198,78:0.28:276
chr1	43213285	rs72661349	C	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.582;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	43223489	rs6700677	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:120,45:0.27:165
chr1	43228189	rs2816593	T	A	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	43296354	rs12727498	G	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr1	43300865	rs79221806	G	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.917;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr1	43300921	rs4660673	C	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	43392250	rs4658	C	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr1	43393245	rs11282849	G	GGGTGAGAAAT	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	43396414	rs11537641	G	A	9676.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:177,447:0.72:624
chr1	43418026	rs2297972	C	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.552;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:95,58:0.38:153
chr1	43610910	rs626842	T	G	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	43613786	rs519666	G	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,75:0.32:231
chr1	43613808	rs60192064	A	G	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:57,107:0.65:164
chr1	43613850	rs34514362	C	CA	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr1	43618726	rs2453416	A	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr1	43621759	rs589819	G	T	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,82:0.71:115
chr1	43630156	rs11559311	A	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:121,49:0.29:170
chr1	43634843	rs74068507	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	43637857	rs3850848	A	G	4150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.066;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:697,279:0.29:976
chr1	43649393	rs663336	T	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr1	43649508	rs663824	A	G	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	43650741	rs598336	T	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	43652222	rs1976285	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	43652281	.	C	CAAA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.142;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	43652296	.	A	AAAG	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=9.115;MLEAC=1;MLEAF=0.500;MQ=61.74;MQRankSum=3.838;QD=9.22;ReadPosRankSum=0.023;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	43652369	rs6413971	T	C	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	43664957	rs58684521	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,77:0.66:117
chr1	43680855	rs4233492	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	43698054	rs12075055	A	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,61:0.73:83
chr1	43698099	rs6684056	A	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr1	43699813	rs3820588	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	43699935	rs2477561	C	T	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	43700140	rs2483688	A	G	11195.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr1	43738340	rs10890247	A	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	43738498	rs34109259	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr1	43738738	rs61736069	C	T	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.278;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:147,60:0.29:207
chr1	43739067	rs1334051	G	A	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-2.616;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:263,114:0.30:377
chr1	43771016	rs3831248	TA	T	12309.73	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	43771090	rs3120044	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	43773033	rs2275180	A	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	43774437	rs1467809	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	43774495	rs2282225	G	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr1	43777852	rs1999595	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:48,91:0.65:139
chr1	43779564	rs3120276	T	C	9279.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr1	43779724	rs138876276	TTG	T	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=4.206;QD=1.22;ReadPosRankSum=-0.081;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:157,25:0.14:182
chr1	43779869	rs2991990	T	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	43782846	rs1198982	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	43785048	rs375304224	G	A	7060.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:152,323:0.68:475
chr1	43787041	rs72878586	C	T	8833.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:239,419:0.64:658
chr1	43804172	rs201594053	G	A	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-0.990;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:26,59:0.69:85
chr1	43805093	rs17572791	T	C	8050.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:166,372:0.69:538
chr1	43812075	rs1760670	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr1	43825644	rs839763	T	C	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr1	43826312	rs710251	C	A	9307.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:319,453:0.59:772
chr1	43855546	rs839752	A	G	6358.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:122,292:0.71:414
chr1	43855578	rs839753	G	C	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:93,169:0.65:262
chr1	43869235	rs710249	G	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	43881794	rs72881993	G	C	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr1	43882121	rs16830763	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	43886350	rs72882000	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr1	43888602	rs2782645	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr1	43889861	rs72883811	T	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr1	43891984	rs114066368	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr1	43894042	rs72883814	T	C	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:91,187:0.67:278
chr1	43897252	rs72883817	A	G	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:56,135:0.71:191
chr1	43907923	rs72883828	C	G	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:108,153:0.59:261
chr1	43916642	rs6954	T	C	6568.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:148,314:0.68:462
chr1	43919413	rs6692611	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr1	43998397	rs11350891	GT	G	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	44010571	rs6695915	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	44058265	rs3828151	C	A	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	44058315	rs113290421	G	GAC	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr1	44064319	rs17849103	A	G	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:121,263:0.68:384
chr1	44067859	rs12023161	A	G	7135.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:150,333:0.69:483
chr1	44071221	rs631248	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:67,145:0.68:212
chr1	44072420	rs539096	A	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	44075227	rs517622	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr1	44078604	rs10890267	A	G	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:72,135:0.65:207
chr1	44079280	rs72877532	C	T	4556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.737;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:634,281:0.31:915
chr1	44083110	rs571862	C	T	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	44083507	rs641365	T	C	19376.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr1	44083519	rs641351	G	A	18100.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	44084620	rs16831024	G	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr1	44084739	rs1143701	C	T	10420.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr1	44086080	rs568639	T	C	9747.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=3.008;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-0.034;SOR=0.128;set=HC	GT:AD:AF:DP	1/1:2,394:0.99:396
chr1	44086831	rs1143702	C	T	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=1.257;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:355,129:0.27:484
chr1	44087496	rs673485	C	T	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	44119038	rs3215842	A	AT	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	44125943	.	A	G	362.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr1	44125962	rs3215843	CA	C	2254.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	44137257	rs586339	C	A	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	44280381	rs37468	A	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	44303786	.	C	CAAAAAAAAAAAAAA	718.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;QD=79.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	44323736	rs2906465	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	44344796	rs2527777	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	44426948	rs2906596	G	A	4206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.741;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:427,233:0.35:660
chr1	44433208	rs187991774	G	C	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.448;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:249,110:0.31:359
chr1	44451115	rs61096284	A	AGG	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.651;SOR=1.620;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr1	44455871	rs2231284	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr1	44457739	rs11376967	T	TC	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	44458092	rs183361462	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:316,121:0.28:437
chr1	44459616	rs147650407	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.510;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:138,51:0.27:189
chr1	44466610	rs76038188	G	A	8038.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:196,371:0.65:567
chr1	44467382	rs80095976	T	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	44468423	rs41270405	C	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	44468440	rs41270407	C	T	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	44475566	rs16831541	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr1	44595047	rs11210969	T	A	5480.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:122,250:0.67:372
chr1	44595113	rs2429051	G	C	6531.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;MQ=59.89;set=Intersection	GT:AD:AF:DP	0/1:146,302:0.67:448
chr1	44679556	rs803369	A	G	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	44681113	rs1291169	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	44684995	rs2799480	T	C	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	44788398	rs161721	A	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	45088629	rs28453885	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	45092137	rs79924800	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	45097777	.	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-1.792;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr1	45101206	rs138968266	TC	T	2522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.194;QD=6.20;ReadPosRankSum=-1.248;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:287,120:0.29:407
chr1	45162883	rs373910589	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:109,41:0.27:150
chr1	45205598	rs3820586	T	C	5180.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:118,238:0.67:356
chr1	45206495	.	G	A	42	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=27;MQ=60.0;NF=2;NR=2;PP=42;QD=19.1928031368;SC=GTTCCTTCAGGTTAACTCCAC;SbPval=0.52;Source=Platypus;TC=10;TCF=6;TCR=4;TR=4;WE=45206503;WS=45206485;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr1	45216038	rs12566610	C	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	45218895	rs3795713	A	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:84,141:0.63:225
chr1	45223901	rs111920953	TATTAGCTG	T	1273.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	45241113	rs11211031	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	45241374	rs3806398	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr1	45244051	rs3838955	T	TG	1151.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr1	45244233	rs139479202	C	T	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.590;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:176,66:0.27:242
chr1	45250007	rs59895800	C	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-3.541;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr1	45252015	rs41269079	T	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr1	45271828	rs17885815	T	C	2737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.892;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:303,161:0.35:464
chr1	45278094	rs4073112	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	45292483	rs11573589	C	T	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:64,123:0.66:187
chr1	45293057	rs7532882	G	A	5412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.824;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:116,247:0.68:363
chr1	45293090	rs11573588	G	A	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.008;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:197,88:0.31:285
chr1	45293518	rs7525308	A	G	11389.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr1	45294156	rs2273940	T	C	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	45294199	rs143390610	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:168,77:0.31:245
chr1	45294821	rs187485698	T	C	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:161,97:0.38:258
chr1	45297583	rs11573574	C	T	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.447;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:211,73:0.26:284
chr1	45297753	rs2295999	A	G	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:83,196:0.70:279
chr1	45307506	rs3795720	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:174,93:0.35:267
chr1	45308409	rs6696675	G	A	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	45340282	rs9988451	C	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	45362992	rs263978	T	C	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	45363250	rs114422879	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr1	45443894	rs2487367	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	45444038	rs11556200	G	A	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:157,245:0.61:402
chr1	45444136	rs72887005	T	C	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:95,137:0.59:232
chr1	45469161	rs113451625	G	A	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:80,126:0.61:206
chr1	45470130	rs7528534	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr1	45470503	rs11211065	G	A	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:26,106:0.80:132
chr1	45472821	.	TG	T	122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=0.284;QD=2.45;ReadPosRankSum=-0.024;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	45472823	.	TG	T	1010.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=1.642;QD=19.07;ReadPosRankSum=0.999;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr1	45472825	.	TGTGTTTGTG	T	580.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=1.297;QD=11.17;ReadPosRankSum=1.449;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr1	45473064	rs72887047	C	T	6273.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:102,291:0.74:393
chr1	45474065	rs72887050	G	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:50,96:0.66:146
chr1	45474750	rs2275599	A	T	6383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.28;ReadPosRankSum=-1.166;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:62,156:0.72:218
chr1	45474755	rs2275598	C	G	6772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=-1.595;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:69,180:0.72:249
chr1	45475278	rs61741088	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:83,187:0.69:270
chr1	45475566	rs6429552	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	45476489	rs3806405	A	G	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr1	45479874	rs6698485	G	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	45479966	rs57055690	AT	A	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	45524213	rs3738246	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	45671966	rs4454584	A	G	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	45794015	rs56015816	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	45796115	rs3219495	G	A	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:27,114:0.81:141
chr1	45796269	rs3219493	G	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	45798555	rs3219487	T	C	16982.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:1,652:1.00:653
chr1	45805566	rs3219468	G	C	22097.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr1	45810923	rs3893383	G	A	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:93,234:0.72:327
chr1	45813441	rs2298018	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	45813820	rs2153607	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	45820918	rs72890585	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr1	45821219	.	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.853;QD=1.16;ReadPosRankSum=-0.409;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	45864695	.	C	A	73	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=60.0;NF=2;NR=5;PP=73;QD=15.3958875067;SC=CTTTAAGCCACTAGTTAGTCC;SbPval=0.42;Source=Platypus;TC=10;TCF=2;TCR=8;TR=7;WE=45864703;WS=45864685;set=Platypus	GT:AD:AF:DP	1/0:3,7:0.70:10
chr1	45961955	rs937290	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	45965307	rs12568144	G	A	8947.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr1	45965340	rs7546268	T	C	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	45973124	rs6662272	G	C	6697.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:152,310:0.67:462
chr1	45973928	rs2275276	G	A	19313.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:2,753:1.00:755
chr1	45981270	rs33912909	CAA	C	373.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.000;QD=23.36;ReadPosRankSum=-0.765;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	45981512	rs2356559	T	C	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	46027355	rs512083	T	C	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	46050004	rs57257530	TTCGG	T	2798.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	46057144	rs2991981	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	46065998	rs3014211	T	C	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	46073489	rs2230657	G	A	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	46073508	rs146584753	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.302;QD=3.07;ReadPosRankSum=-0.626;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr1	46078630	rs2050376	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	46078854	rs2230658	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	46078884	rs2230659	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	46080530	rs2991985	T	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	46080947	rs1972410	A	C	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr1	46081940	rs2356581	T	A	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	46081960	rs2253862	C	T	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	46082431	rs2991988	C	A	5057.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.458;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.593;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-1.078;SOR=0.661;set=HC	GT:AD:AF:DP	1/1:1,198:0.99:199
chr1	46085852	rs2275085	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	46085879	rs2275086	C	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	46086077	rs3014246	C	T	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	46086329	rs11590549	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr1	46086913	rs3014245	C	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	46087577	rs3014242	G	A	19138.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr1	46087879	rs3014241	A	G	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	46088610	rs375692959	G	T	6052.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:113,272:0.71:385
chr1	46089225	rs3014240	C	G	8450.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	46106052	rs36067922	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr1	46124663	rs6671802	A	G	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:60,165:0.73:225
chr1	46166299	rs58944017	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	46290311	rs10561161	GTA	G	2978.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:27,77:0.74:104
chr1	46347876	rs11211216	A	T	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-2.063;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	46347879	rs10890362	T	A	449.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.841;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	46347910	rs6665193	G	A	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	46348229	rs11211217	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	46379518	rs4256763	A	G	5512.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	46424964	rs4460582	G	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	46466721	rs11589562	T	C	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=1.125;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:258,146:0.36:404
chr1	46473802	rs3922887	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	46473899	rs116549504	G	T	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.48;ReadPosRankSum=0.042;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:40,56:0.58:96
chr1	46473902	rs3922886	A	T	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.28;ReadPosRankSum=0.039;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:42,59:0.58:101
chr1	46476587	rs11211247	T	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	46485548	rs946529	G	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	46485562	rs946528	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	46487552	rs2275426	G	A	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.082;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:196,63:0.24:259
chr1	46487560	rs946524	A	G	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-2.630;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:232,89:0.28:321
chr1	46491635	rs785478	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr1	46493460	rs1707336	T	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:185,87:0.32:272
chr1	46493655	rs114910066	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	46495125	rs142515041	CT	C	2757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.412;QD=7.02;ReadPosRankSum=0.035;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:292,101:0.26:393
chr1	46496709	rs925524	A	G	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.184;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:112,68:0.38:180
chr1	46498375	rs1622208	A	G	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	46509703	rs77992526	C	T	233.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	46511487	rs2297883	G	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	46521517	rs785468	G	A	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:156,96:0.38:252
chr1	46521559	rs785467	A	T	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	46546208	rs1768803	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr1	46598269	rs1707304	C	A	4398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=2.459;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:199,120:0.38:319
chr1	46598273	rs1707303	A	C	4327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=2.665;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:211,122:0.37:333
chr1	46598282	rs114819755	A	G	4874.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:133,232:0.64:365
chr1	46641741	rs11211261	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-2.110;QD=1.97;ReadPosRankSum=-1.239;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr1	46641811	rs142891982	T	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr1	46641827	rs12030928	A	G	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.327;QD=10.97;ReadPosRankSum=-0.881;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:91,42:0.32:133
chr1	46641837	rs12752892	G	A	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.294;QD=10.60;ReadPosRankSum=-0.425;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:101,48:0.32:149
chr1	46655158	rs6659553	T	C	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	46658328	rs2292484	A	G	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:11,57:0.84:68
chr1	46658343	rs2292485	G	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr1	46659104	rs7527668	T	C	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr1	46659363	rs7527935	T	C	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:48,138:0.74:186
chr1	46660295	rs2292487	T	C	7735.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:165,367:0.69:532
chr1	46763957	rs149510380	T	C	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:43,114:0.73:157
chr1	46806393	rs41293273	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.567;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	46806429	rs41293275	A	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	46806480	rs17361749	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:83,26:0.24:109
chr1	46806550	rs41293277	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:141,68:0.33:209
chr1	46806703	rs10489769	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr1	46810405	rs79697925	TG	T	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr1	46810670	rs17361763	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:264,116:0.31:380
chr1	46810842	rs6684274	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	46812444	rs17357676	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.098;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr1	46812519	rs17361791	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.308;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr1	46818452	rs17413701	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.092;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	46818479	rs7515598	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-2.114;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	46818508	rs7529674	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.889;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr1	46826587	rs55887761	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.401;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	46827214	rs324414	A	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	46827485	rs1053624	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.442;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:120,48:0.29:168
chr1	46860237	rs72890727	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr1	46870761	rs324420	C	A	6575.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:175,314:0.64:489
chr1	46871986	rs324419	T	C	14743.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr1	46972605	rs12127101	T	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:70,113:0.62:183
chr1	46976530	rs12045200	C	G	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	46976717	rs12045245	C	T	14069.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr1	46976871	rs34614765	G	C	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.203;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:296,96:0.24:392
chr1	47013311	rs1258040	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.115;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:171,51:0.23:222
chr1	47013364	rs1258041	T	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	47014821	.	A	AAAAAAG	2638.73	.	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.82;QD=35.18;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	47015453	.	AAC	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.638;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr1	47059934	rs1258021	T	C	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	47060078	rs7556307	G	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	47075932	rs3818323	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	47078637	rs4660947	T	C	17979.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr1	47080665	rs11211328	C	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	47080679	rs6671527	G	A	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr1	47080741	rs12029680	C	T	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	47099346	rs723333	C	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	47108828	rs736188	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	47109089	rs1745377	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr1	47110668	rs1258054	G	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	47110712	rs1258053	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.650;QD=16.84;ReadPosRankSum=-0.022;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr1	47110766	rs3215990	G	GC	2540.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	47118067	rs620913	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.227;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	47118096	rs2289446	C	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.687;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr1	47118189	rs620431	G	T	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.687;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:256,99:0.28:355
chr1	47124479	rs611468	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,16:0.23:70
chr1	47130873	rs594118	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr1	47133811	rs11211337	T	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.828;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	47138444	rs616249	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	47138819	rs614486	T	G	4847.77	.	AC=1;AF=0.500;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	0/1:597,281:0.32:878
chr1	47139103	rs1025806	C	T	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=2.160;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:379,153:0.29:532
chr1	47155462	rs2241862	G	A	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	47181920	rs10718376	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=13.331;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.326;QD=3.03;ReadPosRankSum=1.200;SOR=3.603;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	47182206	rs3737731	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr1	47264856	rs55672106	C	T	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:113,190:0.63:303
chr1	47264947	rs45518538	G	A	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:182,129:0.41:311
chr1	47276622	rs116105604	G	T	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.258;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:361,132:0.27:493
chr1	47276728	rs2297812	G	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	47276819	rs7513658	G	A	7474.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:149,346:0.70:495
chr1	47277831	rs11211368	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr1	47278997	rs4646486	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr1	47279100	rs45445306	C	G	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:123,247:0.67:370
chr1	47279175	rs4646487	C	T	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:130,280:0.68:410
chr1	47279558	rs4646489	CCCT	C	14434.73	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:191,360:0.65:551
chr1	47279837	rs45520436	A	G	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:403,180:0.31:583
chr1	47280852	rs12094024	A	C	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:53,132:0.71:185
chr1	47280859	rs2297810	G	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:135,45:0.25:180
chr1	47280927	rs17102592	T	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:23,69:0.75:92
chr1	47283505	rs4646495	G	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	47284142	rs45507195	A	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.86;ReadPosRankSum=-1.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	47284144	rs45582833	C	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.86;ReadPosRankSum=-0.674;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	47284526	rs3766196	C	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr1	47348975	rs9429118	C	T	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=0.172;QD=3.98;ReadPosRankSum=-1.570;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr1	47351052	rs5003005	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-2.655;QD=8.20;ReadPosRankSum=-1.068;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	47351073	rs114162687	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=0.899;QD=7.78;ReadPosRankSum=0.794;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	47395718	rs114160471	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:127,80:0.39:207
chr1	47395973	rs1126743	G	A	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:82,170:0.67:252
chr1	47398743	rs3890011	G	C	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:103,260:0.72:363
chr1	47400059	rs71500102	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:215,82:0.28:297
chr1	47401424	rs2269231	A	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	47402487	rs67512144	TTGTG	T,TTG	8834.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.408;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.166;QD=34.78;ReadPosRankSum=-0.390;SOR=0.747;set=HC	GT:AD:AF:DP	1/2:2,191,61:0.75,0.24:254
chr1	47571902	rs4926802	C	T	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-6.908;QD=2.59;ReadPosRankSum=0.315;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:281,80:0.22:361
chr1	47571943	rs10534549	CT	C	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-2.131;QD=2.63;ReadPosRankSum=-1.005;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:133,84:0.39:217
chr1	47571996	rs4926804	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:85,31:0.27:116
chr1	47572046	rs4926805	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	47581139	.	G	GA	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.288;QD=5.01;ReadPosRankSum=1.021;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr1	47582195	rs10890464	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr1	47582246	rs1295463	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr1	47582292	rs10890465	T	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr1	47583415	rs6664496	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	47607851	rs2056899	A	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:173,68:0.28:241
chr1	47609489	rs10789501	T	C	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:344,188:0.35:532
chr1	47609668	rs911909	T	C	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:301,157:0.34:458
chr1	47609944	rs200578397	C	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.273;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.36;MQRankSum=-1.657;QD=12.28;ReadPosRankSum=0.000;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	47610293	rs968322	C	T	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQRankSum=-0.963;QD=4.29;ReadPosRankSum=0.476;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:282,111:0.28:393
chr1	47614185	rs760440	G	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	47614485	rs72684327	A	G	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:350,147:0.30:497
chr1	47652870	rs10549554	CCTTGAG	CAG,C	2196.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	0/1:0.59:95
chr1	47652875	rs10549555	AGC	A	2321.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.44;ReadPosRankSum=-0.632;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr1	47652877	.	CCT	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=4;MGOF=9;MMLQ=27;MQ=60.0;NF=28;NR=6;PP=2944;QD=20;SC=TTCCCTTGAGCCTCAGGGGGA;SbPval=0.64;Source=Platypus;TC=83;TCF=67;TCR=16;TR=34;WE=47652887;WS=47652860;set=Platypus	GT:AD:AF:DP	1/0:49,34:0.41:83
chr1	47652879	rs60327556	T	A	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.86;ReadPosRankSum=-1.406;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:41,61:0.60:102
chr1	47655483	rs150637144	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr1	47655816	rs2248907	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	47685455	rs927462	T	C	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr1	47691084	.	AGCCCCTG	A	211.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	47737637	rs74074054	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=2.105;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr1	47746678	rs10789505	G	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:65,120:0.65:185
chr1	47765490	rs9436838	T	C	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	47767141	rs6689687	C	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	47767914	rs3125630	G	A	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	47768073	rs3122606	C	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.153;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:72,32:0.31:104
chr1	47770441	rs3122615	A	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	47770466	rs3122616	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	47799639	rs7543016	G	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	47841104	rs2306470	C	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.928;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	47841109	rs2253511	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-0.284;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	47842431	rs3125648	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr1	47883019	rs6666370	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	47883024	rs2820969	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.23;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	47904668	rs3046924	T	TCCGCAC	12339.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.72;QD=46.22;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	47904909	rs2405913	G	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	48260462	.	GTT	G	159.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.228;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	48695081	rs212989	G	A	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:72,108:0.60:180
chr1	48697482	.	A	G	936.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr1	48697733	rs212991	T	G	14587.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:1,557:1.00:558
chr1	48707838	rs705430	A	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	48708086	rs17104309	T	G	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:147,66:0.31:213
chr1	48708228	rs850763	G	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr1	48821252	rs116718418	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	48902977	rs2261674	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	49005351	rs60977321	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:188,80:0.30:268
chr1	49052481	rs140798291	TG	T	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	49052933	rs2803277	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	49056695	rs7543402	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=23.65;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	49056772	rs71501782	A	C	157.85	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=26.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	49100151	rs76634539	A	G	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:27,102:0.79:129
chr1	49113247	rs17373849	G	A	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-1.479;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:32,56:0.64:88
chr1	49113319	rs319953	T	C	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	49193394	rs1385152	G	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	49224584	rs1128934	G	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:74,167:0.69:241
chr1	50331725	rs10788920	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	50569735	rs4420127	T	C	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:82,174:0.68:256
chr1	50575675	rs113726459	C	CTG	1740.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr1	50661411	rs2480683	C	T	3307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.437;QD=5.39;ReadPosRankSum=1.522;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:413,201:0.33:614
chr1	50663196	.	AT	A	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.145;QD=5.67;ReadPosRankSum=1.450;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:57,55:0.49:112
chr1	50666515	rs2494876	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:116,53:0.31:169
chr1	50884778	rs2746610	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=25.28;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	50956212	rs149582773	C	CAAATACAGTGG	8031.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.83;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	50957385	rs59743675	A	C	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:362,139:0.28:501
chr1	50957509	rs1149790	A	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	51078089	rs17387761	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:58,91:0.61:149
chr1	51425293	rs144699454	CCA	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.077;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:134,26:0.16:160
chr1	51611603	rs17106417	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	51760235	rs72906136	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr1	51767912	.	G	GCCC	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.154;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr1	51776763	rs72906156	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr1	51777748	rs7521849	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	51787868	rs72906171	G	C	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:34,90:0.73:124
chr1	51808567	rs12072333	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	51808623	rs35273278	C	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr1	51826921	rs17567	T	C	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.084;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:247,121:0.33:368
chr1	51831744	.	AT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.029;QD=0.49;ReadPosRankSum=-0.264;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr1	51869248	rs12756284	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr1	51871438	rs10529789	G	GACTC	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	51873951	rs1065754	G	A	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	51875035	rs72910249	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	51905951	rs72910263	G	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.836;QD=5.35;ReadPosRankSum=1.505;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	51905953	.	G	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.568;QD=4.42;ReadPosRankSum=-1.137;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr1	51910778	rs72910266	A	G	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=0.818;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:39,125:0.76:164
chr1	51924226	rs6672300	C	T	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:59,10:0.14:69
chr1	51929504	rs5774101	TA	T	1559.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	51937328	.	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.703;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	51946856	rs72892019	G	A	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:26,78:0.75:104
chr1	51956019	rs59040444	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.665;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	52179786	rs72898070	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:121,65:0.35:186
chr1	52179818	rs56708609	GT	G	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.061;QD=3.77;ReadPosRankSum=-1.586;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:51,31:0.38:82
chr1	52211190	rs59914789	C	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.244;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr1	52215444	rs112311838	C	CAG	395.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	52218109	rs57978189	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.255;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:149,43:0.22:192
chr1	52222016	rs72900003	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.000;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:59,14:0.19:73
chr1	52227531	rs56663390	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr1	52238187	rs72900021	C	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.132;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:105,48:0.31:153
chr1	52242432	rs57902123	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.144;QD=4.70;ReadPosRankSum=-1.217;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	52248017	rs6678977	A	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	52248035	rs72900030	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	52263882	rs1613430	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	52264064	rs1770791	A	G	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	52266120	rs2842581	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.691;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:73,30:0.29:103
chr1	52279650	rs2982846	T	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	52280511	rs74558295	A	G	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.285;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:70,91:0.57:161
chr1	52293570	rs2077725	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chr1	52293638	rs706495	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	52344415	.	C	T	1215.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr1	52399021	rs2230325	A	G	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:92,159:0.63:251
chr1	52402856	rs10888741	T	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	52402956	rs10888742	G	A	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	52403137	rs201365422	A	AAGCAGTTAAAAGTT	1634.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr1	52489322	rs2783178	G	A	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	52490418	rs4926906	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	52498370	rs2809917	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.695;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr1	52499070	.	CGCCCGCCACCTGAGGTCCCGCGATCGG	C	4157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DP=553;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.623;QD=7.97;ReadPosRankSum=3.230;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:392,130:0.25:522
chr1	52507070	rs2809958	T	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr1	52517412	rs7529324	A	G	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:110,227:0.67:337
chr1	52703491	rs35385323	G	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.651;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:109,22:0.17:131
chr1	52705285	rs3790523	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=3.157;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:160,62:0.28:222
chr1	52729425	.	TCC	T	3287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=28.036;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.155;QD=16.95;ReadPosRankSum=-2.780;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:57,137:0.71:194
chr1	52729431	.	C	CCG	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.487;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=34.899;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.719;QD=6.00;ReadPosRankSum=3.409;SOR=4.016;set=HC	GT:AD:AF:DP	0/1:194,51:0.21:245
chr1	52810393	rs58745889	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.532;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:128,49:0.28:177
chr1	52818972	rs112251254	AAGAT	A	1120.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr1	52820226	rs2820334	G	A	11451.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr1	52828384	rs11555349	A	G	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:375,216:0.37:591
chr1	52840661	rs114164329	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr1	52847257	rs72899833	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.166;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	52847471	rs3087474	C	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	52850446	rs3087484	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	52851719	rs11205953	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.79;ReadPosRankSum=1.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	52874114	rs6665054	A	G	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:91,189:0.68:280
chr1	52878300	rs4319263	T	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	52882406	rs6677047	A	G	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.20;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	52882466	rs113395383	T	G	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.424;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:36,76:0.68:112
chr1	52923971	rs72903632	C	A	1068.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr1	52929339	rs41294510	G	A	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	52947350	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.679;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	53072454	rs1970951	T	C	14507.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr1	53153876	rs74997019	G	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.880;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr1	53158312	rs113687679	C	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	53158587	rs75029633	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr1	53192170	.	G	GCTGCTA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.524;QD=24.55;ReadPosRankSum=-0.000;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	53192187	rs269298	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.253;QD=24.55;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	53237526	rs1571979	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	53245472	rs9661082	A	T	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	53245506	.	A	G	1654.77	.	AC=1;AF=0.500;AN=2;DP=263;set=Intersection	GT:AD:AF:DP	0/1:161,95:0.37:256
chr1	53250650	rs6588443	G	A	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	53261852	.	T	A	33	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=33;QD=16.9428031368;SC=TTAAGAGGAATTTTCCCTTGC;SbPval=1.0;Source=Platypus;TC=15;TCF=15;TCR=0;TR=4;WE=53261860;WS=53261842;set=Platypus	GT:AD:AF:DP	1/0:11,4:0.27:15
chr1	53262456	rs11206020	G	A	6070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.472;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:166,293:0.64:459
chr1	53267477	rs72895408	T	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	53267962	rs12057696	A	G	415.90	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	53271225	rs487453	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	53279378	rs61503874	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:64,118:0.65:182
chr1	53282255	rs12065861	T	C	4775.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:113,228:0.67:341
chr1	53320111	rs78953566	A	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	53320274	rs480299	G	T	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	53322784	rs12088002	G	A	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:113,258:0.70:371
chr1	53323492	rs10788945	C	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	53332415	rs116209496	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	53364976	rs576891	A	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	53370545	.	AAGT	A	2489.73	.	AC=1;AF=0.500;AN=2;DP=263;set=Intersection	GT:AD:AF:DP	0/1:181,74:0.29:255
chr1	53387379	rs7552139	G	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	53407406	rs143386725	CA	C	277.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.085;SOR=0.136;set=HC	GT:AD:AF:DP	1/1:4,20:0.83:24
chr1	53453640	rs7528565	A	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	53453683	rs7516939	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=2.566;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	53453714	rs7538935	G	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	53453930	rs7528867	A	T	60.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	53513768	rs4599997	C	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr1	53516383	rs10888761	C	A	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:74,189:0.72:263
chr1	53527793	.	C	CGGGGG	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.310;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	53527798	rs7544668	C	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-1.089;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	53527948	rs7513730	T	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-1.371;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,52:0.63:83
chr1	53527996	rs56054926	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	53543112	rs946590	C	G	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr1	53543312	rs12745973	C	T	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:47,199:0.81:246
chr1	53544578	rs11206088	T	C	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:62,123:0.66:185
chr1	53544597	rs1288389	T	C	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:40,98:0.71:138
chr1	53554533	rs35707549	A	AT	7794.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:114,239:0.68:353
chr1	53555783	rs1288403	A	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:22,76:0.78:98
chr1	53556495	rs78040334	C	T	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:99,198:0.67:297
chr1	53558270	rs1288406	A	G	5040.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:108,236:0.69:344
chr1	53559310	rs11206091	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr1	53571288	rs1288422	C	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.440;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr1	53600078	rs3737989	A	G	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr1	53608176	rs78670456	G	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,79:0.66:119
chr1	53676682	.	G	A	4630.77	.	AC=1;AF=0.500;AN=2;DP=292;set=Intersection	GT:AD:AF:DP	0/1:82,207:0.72:289
chr1	53684525	rs436887	C	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	53686383	rs1679913	C	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	53716491	rs5173	T	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,62:0.34:182
chr1	53729809	rs115427560	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,24:0.28:87
chr1	53738183	rs7546246	A	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:144,65:0.31:209
chr1	53738349	rs114250770	G	A	7669.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:178,357:0.67:535
chr1	53746165	rs1288517	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr1	53792456	rs12718422	G	C	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:67,123:0.65:190
chr1	53792651	rs3820198	A	C	10609.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr1	53793294	rs146675301	CG	C	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-1.859;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	53793452	rs113759488	T	C	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=1.215;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:78,113:0.59:191
chr1	53793510	.	CTG	C	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.228;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:61,8:0.12:69
chr1	53793511	rs4926972	T	C	1304.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr1	53793513	.	CA	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.834;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:64,8:0.11:72
chr1	53972205	rs2296758	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	53990379	rs11811672	T	G	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:57,106:0.65:163
chr1	54060049	rs111547294	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:170,91:0.35:261
chr1	54060327	rs143981383	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:150,56:0.27:206
chr1	54258880	rs2273139	C	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.685;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr1	54272063	rs1181146	A	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	54275333	rs60041248	CAG	C	500.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	54284814	rs12089209	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	54293957	rs149432552	CCA	C	997.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	54298297	rs72662336	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:63,18:0.22:81
chr1	54303780	rs1181201	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	54303973	.	G	T	2855.77	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:59,136:0.70:195
chr1	54331763	rs1883453	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-0.958;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr1	54344282	rs2272928	C	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-0.229;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr1	54344562	rs115469416	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	54370264	rs2294511	A	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	54370306	rs2294512	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr1	54375570	rs2235544	C	A	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.655;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:258,125:0.33:383
chr1	54375701	rs11206244	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.255;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:88,33:0.27:121
chr1	54375706	rs114860598	G	A	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:28,80:0.74:108
chr1	54387577	rs12090789	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	54389471	rs12067895	C	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	54389517	rs3830768	G	GT	648.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	54394153	rs114322920	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.172;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr1	54395673	rs56847995	CA	C	310.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.891;QD=8.86;ReadPosRankSum=1.108;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr1	54405627	rs78277733	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr1	54432019	rs2294514	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr1	54476147	rs17109656	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr1	54483694	rs34764952	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:138,54:0.28:192
chr1	54561916	rs7555099	C	T	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	54570278	rs113321533	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr1	54605318	rs3841798	T	TG	3559.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:7,155:0.96:162
chr1	54606804	rs3766465	C	T	9040.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	54607051	rs671103	A	G	14762.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr1	54607157	rs671539	G	A	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	54636977	rs10493175	T	C	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr1	54645048	rs75367148	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	54649648	.	C	CTAAATAAA	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.635;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	54660979	rs11206299	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.995;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr1	54671200	rs186521649	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.286;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	54681920	rs13571	G	C	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:88,138:0.61:226
chr1	54683856	rs15921	C	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:190,71:0.27:261
chr1	54683925	rs6621	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr1	54686374	rs612711	T	C	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.339;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:284,124:0.30:408
chr1	54686464	rs613158	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=2.134;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:264,86:0.25:350
chr1	54686475	rs146029834	G	T	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.106;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:264,100:0.27:364
chr1	54690954	rs3088379	T	C	1778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.040;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:256,116:0.31:372
chr1	54703768	rs3766448	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:125,61:0.33:186
chr1	54706733	rs2297027	A	G	2261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.699;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:226,130:0.37:356
chr1	54870614	rs56074243	G	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	55014099	rs299874	C	T	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.496;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:42,55:0.57:97
chr1	55059498	rs142186817	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:70,48:0.41:118
chr1	55064898	rs112040476	A	T	181.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.19;ReadPosRankSum=0.674;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	55066759	rs1655534	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.019;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr1	55066789	rs10533779	CAT	C	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:44,9:0.17:53
chr1	55066813	rs74310754	C	CAT	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:54,11:0.17:65
chr1	55069986	rs746503	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=1.066;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr1	55072726	rs1616691	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	55073719	rs12403630	G	A	5146.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:121,239:0.66:360
chr1	55074840	rs1617287	T	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:188,81:0.30:269
chr1	55075452	rs1368883	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:118,67:0.36:185
chr1	55076197	rs58464768	C	T	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:69,152:0.69:221
chr1	55077135	rs72903830	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	55078046	rs1655528	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-2.877;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr1	55080612	rs112970628	G	GGTGTGT	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,28:0.30:92
chr1	55080629	rs1702015	A	G	742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.559;QD=7.74;ReadPosRankSum=1.175;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:66,30:0.31:96
chr1	55080635	rs1655525	G	A	1124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.439;QD=12.09;ReadPosRankSum=1.090;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr1	55085499	rs11206396	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr1	55118566	rs1655520	C	G	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	55119289	rs9332417	G	C	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:363,146:0.29:509
chr1	55119515	rs1655519	T	G	15536.77	.	AC=1;AF=0.500;AN=2;DB;DP=1055;set=Intersection	GT:AD:AF:DP	0/1:327,723:0.69:1050
chr1	55119534	rs17399810	C	T	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=1100;set=Intersection	GT:AD:AF:DP	0/1:759,334:0.31:1093
chr1	55119546	rs1655518	A	G	35185.77	.	AC=2;AF=1.00;AN=2;DB;DP=1128;set=Intersection	GT:AD:AF:DP	1/1:0,1119:1.00:1119
chr1	55130972	rs471724	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr1	55134379	rs627095	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr1	55134487	rs478513	G	A	5390.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:191,267:0.58:458
chr1	55136067	rs2251719	T	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	55136529	rs480963	T	C	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:113,201:0.64:314
chr1	55138673	rs564400	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr1	55139741	rs570218	A	G	2187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.615;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:38,110:0.74:148
chr1	55163519	rs112706984	A	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	55167773	rs646356	T	A	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	55181373	rs115542663	T	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr1	55182300	rs1147990	T	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr1	55193872	rs1925653	T	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	55194188	rs4462191	C	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	55199091	rs201762743	CAAAAAAA	C	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	55199419	.	AATTTTTTTTTTT	A	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=8.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.446;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	55203135	rs3737829	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	55203156	rs3737830	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr1	55207216	rs41297863	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-1.391;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr1	55223765	rs376406215	G	A	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:76,219:0.74:295
chr1	55251689	rs586462	T	C	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	55253575	rs665118	T	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	55266221	rs146274410	GA	G	2664.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,80:0.62:128
chr1	55266306	rs149315920	G	A	3456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.714;QD=14.17;ReadPosRankSum=-1.319;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:81,163:0.67:244
chr1	55266845	rs1147984	C	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:194,89:0.31:283
chr1	55271730	rs77971467	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	55271774	rs757581	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	55271845	rs72895754	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr1	55271935	rs112383693	A	G	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:109,171:0.61:280
chr1	55272643	rs6666034	C	G	7067.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:136,318:0.70:454
chr1	55273580	rs9782980	G	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr1	55277553	rs61691036	C	T	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.460;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:205,102:0.33:307
chr1	55277599	rs600499	T	C	11041.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	55279322	rs72671884	T	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	55279345	rs149536795	CCCGGCCT	C	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	55280690	rs75191355	G	A	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr1	55282584	rs78882515	C	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr1	55319008	rs631749	T	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	55319902	rs718265	A	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	55330966	rs611057	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	55336950	rs608458	C	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	55337315	rs2303534	C	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:249,92:0.27:341
chr1	55337380	rs2303535	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:73,26:0.26:99
chr1	55352525	rs114416467	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:115,49:0.30:164
chr1	55446664	rs2253467	G	C	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=2.197;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	55446671	rs2253466	C	T	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=2.005;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	55446697	rs2253465	G	A	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	55452130	rs184575542	C	T	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:85,144:0.63:229
chr1	55457710	rs2500326	G	A	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr1	55457815	rs2495513	C	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	55464743	rs2500340	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	55464790	rs2500341	C	G	2491.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:60,113:0.65:173
chr1	55464986	rs34561376	G	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:169,94:0.36:263
chr1	55470809	rs79445756	G	A	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:65,126:0.66:191
chr1	55473043	rs6687801	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	55474262	rs33938617	G	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:176,95:0.35:271
chr1	55474325	rs6682884	A	C	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:200,112:0.36:312
chr1	55474476	rs4339899	C	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	55505732	rs2495482	A	G	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:33,117:0.78:150
chr1	55516781	rs599037	G	T	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	55517940	rs11800231	G	A	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:73,151:0.67:224
chr1	55518160	rs11806638	C	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr1	55518316	rs2483205	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=1.089;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr1	55518467	rs2495477	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	55518528	rs494198	C	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	55521899	rs201349983	GGGGCGGA	G	161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=2.219;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	55521905	rs67578329	GA	G	1175.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-2.139;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:19,57:0.75:76
chr1	55521907	.	GGGCGGA	G	1175.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-2.466;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:19,57:0.75:76
chr1	55523033	rs509504	A	G	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	55523855	rs28362263	G	A	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,79:0.81:97
chr1	55524116	rs585131	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	55524197	rs540796	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr1	55524237	rs562556	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr1	55524339	.	CGTGTGTGTGTGTGT	C	90	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=3;MGOF=19;MMLQ=24;MQ=60.0;NF=0;NR=5;PP=90;QD=18.6;SC=ACCCCTCCTTCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=5;WE=55524362;WS=55524329;set=Platypus	GT:AD:AF:DP	1/0:3,5:0.62:8
chr1	55524387	rs563641	T	C	360.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr1	55525400	rs483462	G	A	297.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	55527222	rs28362277	A	C	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:75,187:0.71:262
chr1	55527323	rs630431	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	55529187	rs505151	G	A	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	55538385	rs654674	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	55539311	rs74072686	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	55542968	rs17111576	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:28,74:0.73:102
chr1	55548991	rs61739739	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.461;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:207,48:0.19:255
chr1	55549088	rs17111591	T	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:11,67:0.86:78
chr1	55549374	rs6588545	T	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	55557810	rs60842090	GA	G	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr1	55557859	rs34673217	A	ATT	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	55562125	rs580485	G	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	55564026	rs2274539	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.277;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	55565598	rs17111621	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.31;ReadPosRankSum=-0.447;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	55567143	rs1165282	T	C	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	55567410	rs615652	A	G	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	55575685	.	A	C	273.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	55590307	rs17111650	G	T	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr1	55591283	rs17111657	C	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:3,158:0.98:161
chr1	55607464	rs74073047	T	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr1	55608442	rs17111674	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=2.734;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr1	55614287	rs74073050	C	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr1	55631650	rs17111697	G	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	55632228	rs17111704	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-3.232;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr1	55638075	rs1165222	G	A	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	55641877	rs140779397	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	55643837	rs11350615	TA	T	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	55691384	rs17111728	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr1	57002613	rs11583161	G	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.227;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:138,44:0.24:182
chr1	57157924	.	C	G	143.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	57158051	rs17848595	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:187,81:0.30:268
chr1	57158150	rs17848596	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.315;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:250,103:0.29:353
chr1	57185818	rs857141	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	57192077	rs76408086	A	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:43,98:0.70:141
chr1	57202872	rs6656021	A	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	57209758	rs72907395	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:145,78:0.35:223
chr1	57216681	rs148805895	T	TAATGATGA	2694.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr1	57216747	rs75052518	G	A	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:87,138:0.61:225
chr1	57219631	rs11404547	G	GA	164.75	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	57221553	rs1774808	GA	TG	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	57224460	rs857103	G	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	57258598	rs4912416	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:3,213:0.99:216
chr1	57340727	rs652785	C	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:48,122:0.72:170
chr1	57347030	rs1754519	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.083;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	57351488	rs856847	G	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	57372541	rs150538946	AT	A	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr1	57372591	rs619545	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	57373778	rs17114555	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.654;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:76,38:0.33:114
chr1	57378149	rs1620075	GC	TT	8341.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;JOINED;set=Intersection	GT:AD:AF:DP	0/1:111,206:0.65:317
chr1	57378198	rs1754533	T	C	4244.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:128,200:0.61:328
chr1	57378334	rs1754534	T	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	57383315	rs1342440	G	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,103:0.61:168
chr1	57395251	rs605648	T	C	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	57422484	rs1013579	C	T	11981.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	57477034	rs697580	G	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	57498943	rs61344621	CT	C	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	57528523	rs61364770	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.384;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr1	57528772	rs1261611	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	57535198	rs3738556	C	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	57602383	rs563921	T	C	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	58946947	rs338224	T	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	58971831	rs3087585	G	A	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:81,189:0.70:270
chr1	58971940	rs11207245	C	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr1	58996203	rs2271004	T	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,49:0.33:150
chr1	58996427	rs2271005	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:42,103:0.71:145
chr1	58999651	rs17117678	T	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,68:0.67:102
chr1	59002221	rs7537470	T	C	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:64,116:0.64:180
chr1	59002460	rs7548097	A	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr1	59002525	rs6587829	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	59004438	rs41296155	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr1	59004979	rs902925	C	T	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	59041940	rs114373153	T	C	13477.77	.	AC=1;AF=0.500;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	0/1:276,625:0.69:901
chr1	59042181	rs14008	G	T	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:496,209:0.30:705
chr1	59042311	rs35075952	T	G	5312.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:92,232:0.72:324
chr1	59042882	rs232835	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=1.559;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	59125894	rs12092264	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	59125899	rs12082192	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	59126676	rs232779	A	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	59127024	rs4912364	T	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	59131311	rs232790	G	T	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	59134586	rs11207284	G	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	59134607	rs57822474	C	CAG	7094.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	59137783	rs539141	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	59137804	rs76041182	A	C	61.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.36;ReadPosRankSum=0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	59139223	rs2064370	C	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	59142713	rs579110	T	C	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	59147420	rs11207292	G	A	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	59147926	rs12139511	T	C	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	59150941	rs2206764	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	59150997	rs5774421	TA	T	41.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-0.956;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	59156155	rs12076049	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	59158632	rs12097333	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	59160724	rs66629118	TA	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=1.089;QD=9.75;ReadPosRankSum=-0.615;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	59165838	rs11207297	T	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	59248813	rs2760499	G	C	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	59251097	rs2760501	T	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-2.429;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	59364615	rs11207326	G	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr1	59364918	rs6658104	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.224;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:217,71:0.25:288
chr1	59787350	rs835409	T	G	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	59844471	rs835435	G	A	8799.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	60073350	rs77543297	C	T	489.78	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	60073643	.	TG	T	1752.73	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr1	60107040	rs12078813	A	G	6995.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:165,339:0.67:504
chr1	60223460	rs590704	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	60280749	rs113730234	GT	G	2436.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	60280962	rs41287714	A	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	60299820	rs618716	C	G	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	60328613	rs2235798	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=0.030;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	60330511	rs11207527	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.81;ReadPosRankSum=-0.249;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	60373666	rs2271800	A	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr1	60466814	rs626251	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=23.62;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	60466840	rs35944236	TA	T	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.540;MLEAC=1;MLEAF=0.500;MQ=61.48;MQRankSum=3.380;QD=4.66;ReadPosRankSum=0.237;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr1	60466911	rs67112814	ACAG	A	614.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	60475911	rs76706568	A	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr1	60475930	rs616949	C	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:31,76:0.71:107
chr1	60499020	rs74393539	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	60505578	rs680390	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	60521164	rs7525633	T	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.086;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	61548344	rs113913435	TTC	T	1688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=3.026;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.640;QD=5.63;ReadPosRankSum=0.931;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:216,84:0.28:300
chr1	61818422	rs7528918	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	61818428	.	T	TACACACAC	281.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.30;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	61869783	rs2236059	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:56,156:0.74:212
chr1	61872215	rs58081092	GC	G	3890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=61.291;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.606;QD=29.48;ReadPosRankSum=0.676;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:34,98:0.74:132
chr1	61872225	rs374963406	C	G	4076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=43.344;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.729;QD=24.27;ReadPosRankSum=3.189;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:57,111:0.66:168
chr1	61872228	rs28641100	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=34.433;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.719;QD=4.25;ReadPosRankSum=-3.563;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:120,64:0.35:184
chr1	61892301	rs5774558	T	TG	8217.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	62149354	rs61498236	AT	A	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	62160542	rs1151765	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	62174971	rs6678289	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.328;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr1	62190897	rs17122715	A	G	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.704;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:234,99:0.30:333
chr1	62191036	rs11207813	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr1	62232031	rs1286835	C	T	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.475;QD=4.93;ReadPosRankSum=-2.200;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:172,80:0.32:252
chr1	62232130	rs11207827	T	C	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-2.006;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:123,48:0.28:171
chr1	62263113	rs12073408	C	T	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:45,110:0.71:155
chr1	62293288	rs12093825	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-1.491;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr1	62327304	rs116544267	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.117;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	62329885	rs35853578	AT	A	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	62330080	rs2799627	T	G	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-1.082;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:165,76:0.32:241
chr1	62341157	rs4598521	T	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	62350123	.	G	GTTT	114.90	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=22.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	62365217	rs1412622	C	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	62374267	rs2151122	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	62380124	rs4915789	A	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	62380195	rs2482858	A	G	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-2.151;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:108,57:0.35:165
chr1	62380223	rs11585422	G	T	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	62380270	rs1134766	C	T	8030.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=3.131;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=24.41;ReadPosRankSum=1.697;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:1,328:1.00:329
chr1	62393394	rs2251182	A	G	1942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.803;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:350,136:0.28:486
chr1	62417925	rs111315851	T	TGAGA,TGA	266.84	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	0/1:0.69:13
chr1	62417952	.	A	G	164	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=4;HapScore=2;MGOF=11;MMLQ=27;MQ=59.66;NF=8;NR=1;PP=164;QD=22.085690283;SC=GAGAGAGAGAAAAATAGGCCC;SbPval=0.91;Source=Platypus;TC=33;TCF=25;TCR=8;TR=9;WE=62417960;WS=62417942;set=Platypus	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	62456014	rs1134767	G	A	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	62456048	rs12730210	G	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	62516683	rs2498982	G	C	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.276;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:190,78:0.29:268
chr1	62544470	rs374995682	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	62550098	rs12076103	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.604;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	62566022	.	G	A	894.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr1	62579672	rs1475564	A	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.347;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr1	62579823	rs1475563	G	A	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.625;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:459,146:0.24:605
chr1	62579907	rs7418709	C	T	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-1.214;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:308,94:0.23:402
chr1	62582212	rs79226919	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.330;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	62587014	rs4019806	T	TAAA	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.466;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:93,40:0.30:133
chr1	62628500	rs58055963	TCC	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.402;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr1	62644118	rs2481703	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	62672546	rs2457829	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	62673037	rs7542665	T	C	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	62673225	rs7533274	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr1	62675619	rs4625314	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	62675892	rs2481694	A	G	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.026;QD=13.43;ReadPosRankSum=0.965;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:48,90:0.65:138
chr1	62676284	rs2886644	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr1	62677048	rs1056517	G	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	62704181	rs76827207	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	62713224	rs2941679	C	G	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	62733939	rs11207950	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	62734089	rs17123306	C	T	11716.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	62737372	rs4609464	A	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	62738904	rs7516290	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	62738961	rs61623093	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	62740065	rs12127930	A	G	13573.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	62740446	rs2666506	T	C	12962.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	62740449	rs2666507	T	C	12930.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	62905425	rs3737890	A	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	62921149	.	ATAGT	A	1628.73	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr1	62939634	rs1168007	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	62943264	rs1168008	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	62953183	rs1168025	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr1	62961928	rs1168038	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	62976348	rs17123688	T	C	2690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=1.073;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:72,132:0.65:204
chr1	62976472	rs1168043	T	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	63024584	.	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.906;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	63027411	rs5774610	AG	A	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.898;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	63044645	rs199915737	CA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.545;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	63063177	rs12565895	C	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	63067494	rs77871363	T	C	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.078;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:185,101:0.35:286
chr1	63069711	rs12563308	T	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:31,67:0.68:98
chr1	63070537	rs67461605	AGTTAATGTG	A	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	63085483	rs34571440	T	TA	215.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.136;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	63090858	rs6587980	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr1	63113689	rs1168088	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	63269580	rs12125325	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	63270772	rs1927486	C	T	128.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.05;ReadPosRankSum=-0.674;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	63306960	rs12743698	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	63307303	rs3737892	A	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=-0.573;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	63329876	rs367630030	GA	G	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-0.078;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	63871881	rs1012872	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	63872871	rs6588028	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	63879926	rs375709990	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=0.700;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	63881552	rs4630153	C	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	63912545	.	G	GT	375.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.319;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr1	63912546	rs12760364	G	T	1597.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	63975830	rs6588047	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.46;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	63991140	rs9436686	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=-0.792;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	63991322	rs17125106	T	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.062;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr1	63997633	rs9804078	A	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=1.677;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:27,52:0.66:79
chr1	63998326	rs72163225	G	GT	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;MQ=59.68;set=Intersection	GT:AD:AF:DP	0/1:67,17:0.20:84
chr1	63999868	rs6657480	T	C	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	64015217	rs217485	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	64017261	rs201931148	T	TG	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=-0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	64027358	rs74972779	A	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	64038107	rs6588050	G	T	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-0.044;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	64095111	rs855314	A	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:219,89:0.29:308
chr1	64095862	rs72681118	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.710;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	64102114	rs2269248	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	64104630	rs137891362	GA	G	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	64125234	rs11208265	G	T	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=1.817;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:34,71:0.68:105
chr1	64240240	rs606550	C	T	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	64515379	rs1772626	C	T	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	64608329	rs2762833	G	T	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr1	64624612	rs4362024	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	64643650	rs35586842	C	T	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:77,176:0.70:253
chr1	64644605	rs55905729	A	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr1	64669851	rs74081708	G	A	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=1.237;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:32,93:0.74:125
chr1	64672526	rs35834004	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.798;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr1	64680654	rs7534166	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr1	64680682	rs825174	C	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	64707243	rs825189	G	C	124.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.87;ReadPosRankSum=-0.282;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	64709891	rs10789152	A	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.093;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:85,41:0.33:126
chr1	64726414	rs705542	A	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=2.274;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	64732733	rs17126258	G	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=-2.412;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:11,45:0.80:56
chr1	65016349	rs2164571	A	T	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	65016399	rs11808959	G	A	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:60,188:0.76:248
chr1	65045602	rs5774708	TA	T	529.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr1	65068638	rs6665437	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	65068669	rs376759587	AT	A	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	65099978	rs2118102	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.229;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr1	65107372	rs6664905	C	T	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	65113351	rs7534210	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	65113568	rs6588100	T	C	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	65119397	rs7518616	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:77,33:0.30:110
chr1	65129305	rs111533656	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:160,76:0.32:236
chr1	65131892	rs10713356	CA	C	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	65141676	.	TTAATAATAATAATAATAA	T	597.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=11.653;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=-1.760;QD=6.57;ReadPosRankSum=1.443;SOR=2.182;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr1	65141684	rs201846593	AAT	A	2015.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.000;QD=19.96;ReadPosRankSum=3.173;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:30,71:0.70:101
chr1	65247394	rs2478151	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	65255018	rs2500232	G	A	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	65301669	rs2254002	C	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	65305194	rs310243	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr1	65310489	rs2230588	T	C	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	65311116	rs2780821	GC	CT	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	65316675	rs310216	G	A	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	65321388	rs310229	G	A	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	65325970	rs310224	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	65326095	.	TTGCA	T	242	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=4;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=242;QD=67.5;SC=AATATACCCCTTGCATGCATT;SbPval=0.51;Source=Platypus;TC=6;TCF=1;TCR=5;TR=4;WE=65326106;WS=65326085;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr1	65326098	rs200133188	CATGCATTT	C	276.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	65330682	rs2256298	G	A	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	65348903	rs7548407	T	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	65684425	rs11208611	C	T	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr1	65690461	rs4915685	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	65830297	rs58549467	GT	G	99.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.385;QD=7.66;ReadPosRankSum=0.319;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	65830608	rs1570868	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	65844963	rs3818449	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	65845042	rs2296480	A	T	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	65845076	rs2296481	C	T	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	65858151	rs11208644	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	65860660	rs12077111	T	C	11484.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr1	65860687	rs4582839	A	C	11915.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr1	65867391	rs4592284	C	G	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	65867519	rs4915691	G	A	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	65874626	rs66951816	A	AT	35.06	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	65886398	rs3790435	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=2.295;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:151,33:0.18:184
chr1	65886448	rs3790434	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.162;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:274,79:0.22:353
chr1	65887013	rs12145690	A	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:159,72:0.31:231
chr1	66036501	rs2186248	G	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	66058513	rs1137101	A	G	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.207;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:211,85:0.29:296
chr1	66070687	rs146481833	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	66083537	rs4655564	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	66085574	rs3790439	T	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.931;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	66087301	rs4655743	G	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	66088701	rs12067936	C	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	66102257	rs1805096	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:181,73:0.29:254
chr1	66618264	rs147320960	CAT	C	1496.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	66618316	rs141660761	TACACAC	T	83.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.75;ReadPosRankSum=1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	66723453	rs1321176	C	T	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:185,278:0.60:463
chr1	66732529	rs6701329	A	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	66829000	rs144133808	AT	A	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.422;QD=3.51;ReadPosRankSum=1.147;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:99,46:0.32:145
chr1	66829262	rs783039	A	G	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	66831322	rs7538869	T	G	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:85,157:0.65:242
chr1	66831370	rs783036	G	A	7827.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	67094171	rs12402181	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:170,80:0.32:250
chr1	67101802	rs7546825	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	67108456	rs114288985	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,38:0.28:136
chr1	67109335	rs7526812	A	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:147,103:0.41:250
chr1	67126114	rs12094526	A	G	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.983;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:256,113:0.31:369
chr1	67154730	.	CAAA	C	2782.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.46;ReadPosRankSum=1.232;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:36,100:0.74:136
chr1	67160336	rs2146904	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr1	67195184	rs1032635	C	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.26;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	67195184	.	CAGGGTCGC	GAGGGTCGC,GAGGGTCGG	484	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=18,1;NR=31,6;PP=484,36;QD=10.587167603;SC=ATCTTAGCAACAGGGTCGCAC;SbPval=0.54;Source=Platypus;TC=49;TCF=18;TCR=31;TR=49,7;WE=67195200;WS=67195174;set=Platypus	GT:AF:DP	0/1:1.00:49
chr1	67195192	rs1032634	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.844;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr1	67199349	rs17129391	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	67204980	.	G	GTGGGAGAAAA	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=20.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.066;SOR=4.429;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	67204985	.	A	AGCTTC	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=27.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-0.854;SOR=5.094;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr1	67204987	.	G	GGTT	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.427;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=39.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=-1.265;SOR=5.813;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr1	67204991	.	T	TTTCAGATTAATGGTCCAGACCTAAA	1604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.947;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=43.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-1.155;SOR=6.168;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr1	67206943	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=4.008;QD=0.28;ReadPosRankSum=0.082;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:96,18:0.16:114
chr1	67266756	rs549148	T	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,34:0.31:111
chr1	67288045	rs482082	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:223,71:0.24:294
chr1	67292473	rs34718535	A	AT	2442.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr1	67292478	rs36067642	T	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr1	67303303	rs6698076	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr1	67303346	rs76280974	T	C	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,104:0.68:153
chr1	67337285	rs1280338	C	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	67340384	rs113856094	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.368;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:108,28:0.21:136
chr1	67358900	rs113552126	A	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=1.698;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	67359109	rs113729022	G	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr1	67359195	rs3008881	T	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	67390416	rs3008858	G	C	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr1	67390468	rs1886686	C	G	11181.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr1	67394707	rs146880793	AG	A	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr1	67396222	rs3008861	T	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	67424488	rs112036823	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr1	67425311	rs2985794	T	G	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	67425494	rs35465377	A	AT	89.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.15;ReadPosRankSum=1.534;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr1	67474880	rs12061148	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.294;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	67487109	rs77253931	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	67487399	rs72407410	CAG	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=12.705;MLEAC=1;MLEAF=0.500;MQ=63.66;MQRankSum=1.353;QD=3.48;ReadPosRankSum=2.885;SOR=2.100;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr1	67487403	.	CACAG	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=12.818;MLEAC=1;MLEAF=0.500;MQ=63.72;MQRankSum=1.245;QD=3.65;ReadPosRankSum=2.271;SOR=2.098;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	67487407	.	G	C	1225	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=26;MQ=62.2;NF=16;NR=19;PP=1225;QD=35.9934632156;SC=CACAGACACAGACACACACAC;SbPval=0.29;Source=Platypus;TC=68;TCF=26;TCR=42;TR=35;WE=67487418;WS=67487367;set=Platypus	GT:AD:AF:DP	1/0:33,35:0.51:68
chr1	67508067	rs79424188	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:109,56:0.34:165
chr1	67512903	rs1024229	G	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr1	67512920	rs1024230	A	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr1	67516189	rs199880356	TG	T	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	67518534	rs10157422	C	T	7149.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:165,337:0.67:502
chr1	67519422	rs6660202	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	67519425	.	G	A	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.18;ReadPosRankSum=1.134;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr1	67519435	rs145865907	C	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=1.599;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:19,47:0.71:66
chr1	67558739	rs6588237	C	T	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	67560897	rs10889653	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	67560956	rs11208997	C	T	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	67562106	rs6670381	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	67577367	rs6588240	A	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	67579245	rs2144655	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	67579386	rs2144656	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	67591347	rs6691094	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.698;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	67591611	rs11336462	GA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.333;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	67591660	rs4655520	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	67648460	rs6687620	T	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	67685387	rs7530511	T	C	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	67685443	rs7518660	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	67705726	rs10889671	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=-0.489;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	67795319	rs1495963	T	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:139,57:0.29:196
chr1	67795450	rs2307149	A	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	67796641	rs147756804	ATTAAC	A	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	67855909	rs17129967	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.095;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	68151685	rs3783466	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr1	68151980	rs2759219	T	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr1	68153270	rs3046000	TTTCTCCTCA	T	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	68512171	rs11801053	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.247;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	68512441	rs61736596	A	G	1286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.295;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:205,79:0.28:284
chr1	68603731	rs1831297	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.684;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	68613933	rs2303949	C	T	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:85,146:0.63:231
chr1	68614013	rs2566789	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	68614155	rs76273218	C	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr1	68620998	rs2820488	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	68624878	rs3748705	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:149,61:0.29:210
chr1	68652184	rs113664516	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.862;QD=0.64;ReadPosRankSum=0.491;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr1	68659996	rs79869364	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	68905358	rs1925955	G	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	68910612	rs3790471	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	68943436	rs1924542	G	A	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.22;ReadPosRankSum=0.563;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:42,59:0.58:101
chr1	68943442	rs3790476	A	G	2347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.25;ReadPosRankSum=0.982;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:41,60:0.59:101
chr1	68943665	rs12119046	T	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr1	68947318	rs3833522	C	CA	14102.73	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:2,544:1.00:546
chr1	68949139	rs10789263	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr1	68952564	.	AACACAC	A	342.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	68960476	rs4926345	T	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	70034370	rs11280966	C	CCAGCCGCGTG	3030.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=8.341;QD=9.81;ReadPosRankSum=0.050;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:217,92:0.30:309
chr1	70304758	rs12735430	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.484;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:54,22:0.29:76
chr1	70397087	rs7530457	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:176,79:0.31:255
chr1	70505191	rs76929550	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:115,44:0.28:159
chr1	70587360	rs641909	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	70671201	rs141514793	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:49,78:0.61:127
chr1	70819575	rs185765527	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	70904523	.	T	TTG,TTGTG	1650.70	.	AC=1,0;AF=0.500,0.00;AN=2;DP=164;set=Intersection	GT:AF:DP	0/1:0.77:95
chr1	70904800	rs1021737	G	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.549;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:201,73:0.27:274
chr1	71331498	rs1409986	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	71334870	rs1536537	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.393;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:94,38:0.29:132
chr1	71419499	rs571705	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	71440217	rs2072947	C	T	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	71536574	rs11583800	G	C	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.512;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:114,52:0.31:166
chr1	72058405	rs1334005	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr1	72058543	rs3795696	A	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:61,105:0.63:166
chr1	72058552	rs1413368	G	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,67:0.36:184
chr1	72242039	rs6424448	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	72747844	rs3101341	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	74507711	rs7538410	T	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	74574732	.	GTATTA	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.842;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	74575182	rs1340472	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	74646514	rs6701961	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	74648182	rs1047127	A	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	74664149	rs4422957	T	C	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	74665493	rs792310	G	A	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	74666344	rs35329584	A	AC	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	74669973	rs9425024	T	G	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	74671519	rs571848	A	G	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	74701950	rs532221	T	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	74705494	rs41289182	G	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,68:0.71:96
chr1	74705677	rs115054195	G	A	1904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-1.080;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,90:0.69:130
chr1	74716515	rs11437074	C	CT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.495;QD=4.05;ReadPosRankSum=-1.910;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr1	74801864	rs11210450	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr1	74819077	rs6424586	T	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	74841173	rs2880795	A	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	74901829	rs45589143	A	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,87:0.67:130
chr1	74902244	rs41289200	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr1	74936374	rs596204	A	G	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	74936454	rs491922	G	C	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	74937749	rs3765674	A	G	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	74941210	rs648614	C	T	11396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.859;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=0.496;SOR=0.219;set=HC	GT:AD:AF:DP	1/1:2,444:1.00:446
chr1	74941293	rs649058	G	A	12322.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr1	74954856	rs45592143	C	CT	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	75006076	rs3845348	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	75009699	rs45520236	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr1	75036783	rs9326115	T	C	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	75036812	rs9326116	C	T	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	75037845	rs12723334	A	G	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:267,124:0.32:391
chr1	75038228	rs11580409	A	C	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:273,144:0.35:417
chr1	75072264	rs41289216	G	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr1	75097426	rs11210490	G	C	3211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=2.144;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:46,148:0.76:194
chr1	75108863	rs623171	A	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr1	75172001	rs7527057	T	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:174,111:0.39:285
chr1	75172756	rs10601033	TA	T	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.843;QD=3.42;ReadPosRankSum=0.608;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr1	75175714	rs57891038	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	75175797	rs57413593	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,83:0.71:117
chr1	75175886	rs3819946	T	C	3061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.018;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:78,144:0.65:222
chr1	75176017	rs17095826	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	75190452	rs1051122	C	T	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	75199152	rs277373	C	T	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	75204447	rs11538281	G	A	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-1.889;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:46,90:0.66:136
chr1	75214390	rs749690	G	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.416;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr1	75217990	rs61741065	A	T	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:76,148:0.66:224
chr1	75603055	rs1526503	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	75614380	rs35220110	CT	C	2882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.417;QD=10.11;ReadPosRankSum=0.119;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:79,206:0.72:285
chr1	75622616	rs941032	C	T	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	75626420	rs2462955	A	T	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	75679569	rs3831898	C	CT	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.806;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr1	75680433	rs687715	G	A	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr1	75680545	rs688513	T	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	75681351	rs594470	A	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.71;ReadPosRankSum=-0.156;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	75681511	rs595009	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	75685403	rs600734	T	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:233,89:0.28:322
chr1	75685643	rs12042874	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	75699646	rs10493564	T	C	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.762;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:41,103:0.72:144
chr1	75699771	rs10493565	A	G	5972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.887;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:163,294:0.64:457
chr1	75699831	rs10493566	G	A	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:70,128:0.65:198
chr1	75704070	rs147152873	CATATATATATATAT	C	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	75707652	rs7556057	C	T	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:54,157:0.74:211
chr1	75708529	rs1856128	A	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:16,66:0.80:82
chr1	75716925	rs588098	C	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.430;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:183,78:0.30:261
chr1	75766186	rs623850	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-2.744;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	75823084	rs1249833	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	75862147	rs41291504	G	T	438.84	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	76007232	rs211744	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	76143505	rs1746748	T	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	76194229	rs11316888	GT	G	2357.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	76194306	rs1146572	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	76226846	rs77931234	A	G	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.285;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:342,96:0.22:438
chr1	76234886	rs1146593	A	G	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	76252011	rs1146634	G	A	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	76252687	rs1146636	T	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	76253045	rs3831900	T	TA	3095.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	76255613	rs11588643	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	76257892	rs12703	A	T	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	76262523	rs721204	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.308;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr1	76269372	rs5745323	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	76269460	rs5745325	G	A	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	76280543	rs1144339	A	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	76344011	rs1493367	C	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	76344711	rs5745449	A	T	4256.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=-1.790;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,169:0.99:171
chr1	76344920	rs5745453	G	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	76345640	rs2307077	G	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	76346920	rs5745466	C	CAT	3586.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	76349534	rs5745485	C	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	76363505	rs2029680	A	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	76378275	rs5745547	G	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	76378357	rs71690142	ATAT	A	2950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.97;MQRankSum=0.671;QD=13.41;ReadPosRankSum=2.010;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:29,191:0.87:220
chr1	76608491	rs289686	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-1.481;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	76608507	rs172333	C	G	348.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.091;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	76608508	rs71071986	CT	C	368.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.587;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	76608532	rs597362	T	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.436;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.141;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:50,23:0.32:73
chr1	76608777	rs184095	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	76771475	rs10782610	G	T	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.06;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	76771495	rs11162118	G	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-1.299;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:68,32:0.32:100
chr1	77092972	rs12562880	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	77093010	rs680442	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.409;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr1	77093011	rs587021	T	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.947;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	77093180	rs1184626	C	A	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.508;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:176,73:0.29:249
chr1	77627096	rs839825	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	77634948	rs1779199	G	A	6366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.466;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.219;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=-0.756;SOR=0.388;set=HC	GT:AD:AF:DP	1/1:1,255:1.00:256
chr1	77747982	rs116049705	G	A	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:151,299:0.66:450
chr1	77763542	rs1167206	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	77949123	rs7515509	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.32;ReadPosRankSum=2.120;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr1	77949129	rs7528932	A	T	599.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.46;ReadPosRankSum=1.750;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:1,15:0.94:16
chr1	78001881	rs10873948	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	78024284	rs6675743	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	78024345	rs79671213	C	CTAT	3811.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	78031994	rs7552291	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	78033981	rs145860524	AAAATG	A	1642.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	78045369	rs1565852	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	78105067	.	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.541;QD=0.34;ReadPosRankSum=-0.880;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr1	78179032	rs71075758	AT	A	107.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	78184433	rs1963170	G	A	235.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=1.338;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	78281002	rs11162386	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	78383467	rs1749913	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	78399207	rs4483454	C	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	78430689	rs11409017	A	AG	10187.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chr1	78444764	rs140681455	C	CGGCCG	2560.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr1	78471060	rs11384806	T	TC	269.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=26.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	78478675	rs3790586	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	78481640	rs1039863	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	78958893	rs116802591	G	A	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:106,241:0.69:347
chr1	78963437	rs1322934	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	78998049	.	TTATATA	T,TTATATATA	267.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;QD=29.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/2:0,4,5:0.44,0.56:9
chr1	79093818	rs273259	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	79094081	rs1333973	T	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	79094593	rs273257	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	79095339	rs273256	A	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	79095526	rs3820093	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:125,72:0.37:197
chr1	79095581	rs987495	T	C	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr1	79102726	rs1981071	C	T	1477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=1.402;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:143,81:0.36:224
chr1	79106899	rs273252	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	79125154	rs149042991	A	C	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr1	79355596	rs1061728	A	G	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=2.344;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr1	79383458	rs12569007	A	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-2.391;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:62,33:0.35:95
chr1	79383748	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=3.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.732;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:104,25:0.19:129
chr1	79392756	rs12754818	C	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=-2.450;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	79401927	rs61770681	A	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	79472141	rs1571992	C	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.235;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr1	79472176	rs115193786	C	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.324;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:118,53:0.31:171
chr1	79474645	rs114812903	G	A	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.941;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:125,56:0.31:181
chr1	81970883	rs376380959	CCA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	81970974	rs369786925	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=0.851;QD=9.39;ReadPosRankSum=-0.990;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	82302600	rs12064537	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr1	82402364	rs142993868	TAATC	T	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr1	82415814	rs9438715	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	82417552	rs7413275	T	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	82421596	rs11163397	C	T	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	82437670	rs144957268	ATTTGT	A	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	82437682	rs41292976	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	82456930	rs7536425	T	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	82459578	.	AAAT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.46;ReadPosRankSum=0.253;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	82459781	rs61773977	C	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr1	82459817	.	AAC	A	95	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=2;MGOF=17;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=95;QD=35.0;SC=CTATTTGCAAAACACACACAC;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=3;WE=82459826;WS=82459807;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	6642.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	84383079	rs17534614	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr1	84544163	.	C	T	156.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	84640691	rs582201	T	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	84700820	rs41293017	T	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	84765360	rs1625305	T	A	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=3.413;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr1	84791239	rs315555	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	84810396	rs315528	A	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	84810815	rs315527	A	G	12387.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr1	84853957	rs665074	A	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	84864256	rs3738573	G	C	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	84867610	rs3754274	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	84874031	rs150912442	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:107,46:0.30:153
chr1	84874242	rs3116406	C	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	84876711	rs3216015	C	CA	3297.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	84876731	rs1506700	T	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	84880380	rs3768250	T	C	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:3,424:0.99:427
chr1	84944989	rs2292191	A	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	84946745	rs7413066	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	84986213	rs5775789	AT	A	285.25	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	85011482	.	CTT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	85039828	rs41299545	G	A	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.439;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:263,104:0.28:367
chr1	85039955	rs2303307	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:193,105:0.35:298
chr1	85039998	rs142534762	CGCAGCGCCA	C	1001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.660;QD=9.82;ReadPosRankSum=2.416;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr1	85040069	rs2911592	G	A	765.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=7.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-2.857;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr1	85040070	rs115347546	C	A	765.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.700;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=7.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-3.737;SOR=1.747;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr1	85113203	rs2994949	T	C	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,337:1.00:338
chr1	85113229	rs1057746	A	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	85121255	rs4537578	A	G	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	85128262	rs2911563	A	G	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr1	85128280	rs2994437	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	85128305	rs11164033	G	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	85131641	rs2911566	G	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	85131982	rs3096445	T	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	85331808	rs146269415	G	GAGA	1197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=7.543;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.755;QD=7.83;ReadPosRankSum=0.397;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:115,38:0.25:153
chr1	85392324	rs6681025	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:124,54:0.30:178
chr1	85397286	rs34793286	G	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	85418307	rs677476	C	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr1	85422061	rs632545	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:235,115:0.33:350
chr1	85424182	rs673998	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.230;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	85462582	rs11161503	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	85462652	rs11161504	G	T	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	85462665	rs11161505	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.63;ReadPosRankSum=-1.960;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	85488030	rs2028304	G	A	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	85488154	rs2039814	G	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	85537502	rs4907131	T	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	85537522	rs4907132	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	85537706	rs17099213	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	85555672	rs1417351	A	C	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	85559118	rs11304107	CT	C	1717.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,92:0.62:149
chr1	85559452	rs709762	A	G	7976.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:181,376:0.68:557
chr1	85560313	rs709765	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	85561546	rs709766	T	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr1	85563444	rs111398421	GA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=0.552;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	85564138	rs817489	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	85570419	.	TG	T	298.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	85573705	rs11427716	A	AC	1090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.785;QD=13.30;ReadPosRankSum=-1.103;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:30,52:0.63:82
chr1	85583293	rs6678615	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	85589939	rs11356964	GT	G	2131.73	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:196,84:0.30:280
chr1	85592126	rs817474	G	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.215;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	85595645	rs1020770	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.482;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:211,72:0.25:283
chr1	85598527	rs36118758	TC	T	3233.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	85624549	rs709786	C	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	85624864	rs817412	G	A	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	85647713	rs817444	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	85648620	rs817443	C	T	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	85648905	rs11161539	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	85724328	rs4949926	C	T	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	85787114	rs233116	A	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.55;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	85787114	.	AACCG	TACCC,TACCG	354	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=5,23;NR=2,11;PP=54,354;QD=15.3525535517;SC=TCTTGCCGGCAACCGGGGGGG;SbPval=0.71;Source=Platypus;TC=34;TCF=23;TCR=11;TR=7,34;WE=85787126;WS=85787104;set=Platypus	GT:AF:DP	0/1:0.21:34
chr1	85787118	rs3087894	G	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.871;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr1	85787323	rs1498375	T	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.690;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr1	85790633	rs1498373	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr1	85930272	rs4001153	GAC	G,GACAC	1261.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/2:0.38,0.58:48
chr1	86046561	rs2297140	C	A	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr1	86046924	rs2297141	G	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr1	86146672	rs3767162	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	86167957	rs1764298	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	86202016	rs1481200	C	T	11028.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr1	86210241	rs11387251	G	GT	702.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	86210546	rs7547023	G	A	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	86211325	rs10747324	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	86246849	rs313722	A	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	86249063	rs313724	C	T	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	86249911	rs313725	A	G	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	86334070	rs313775	T	A	610.74	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr1	86334316	rs17411495	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr1	86334675	rs11161693	T	C	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	86340193	rs11161696	G	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	86340523	rs1564518	T	C	151.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	86340794	rs1564516	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	86340892	rs7536101	A	G	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-1.626;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:25,56:0.69:81
chr1	86355414	.	CT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.068;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr1	86361802	rs7541806	C	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	86372839	rs5775877	T	TG	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr1	86375654	rs1502657	C	G	5394.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:124,257:0.67:381
chr1	86377028	rs10493777	C	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-0.322;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:31,64:0.67:95
chr1	86435957	.	T	TA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.380;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	86482922	rs557928	A	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr1	86487914	rs11161721	C	A	4905.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:108,231:0.68:339
chr1	86487981	rs516213	G	A	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	86487992	rs5775882	A	AACAG	4975.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	86488232	rs641712	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-3.199;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:125,31:0.20:156
chr1	86497417	rs145877277	TG	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	86497769	rs582141	C	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	86515958	rs17415366	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	86524913	rs41305880	A	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=3.189;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr1	86529390	rs12742014	G	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:113,136:0.55:249
chr1	86554813	rs56934354	G	GA	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-1.955;QD=12.86;ReadPosRankSum=-1.252;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr1	86554821	rs12405791	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-1.748;QD=11.66;ReadPosRankSum=-1.545;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr1	86557967	rs11161732	G	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.102;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	86590915	rs2174767	G	A	5926.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	86591837	rs11161747	G	A	8248.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	86621992	rs1999747	C	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	86814688	rs272491	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.35;ReadPosRankSum=0.921;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	86818572	rs272496	T	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	86820267	rs1182098	C	T	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr1	86821194	rs10676142	A	ACT	140	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	86822231	rs385437	A	G	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:126,203:0.62:329
chr1	86838158	rs421105	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	86847955	rs272516	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr1	86852621	rs2390096	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr1	86891179	rs2210641	T	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.947;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	86896354	rs4292929	G	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	86896541	rs3737672	G	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.148;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:122,67:0.35:189
chr1	86897973	rs1334150	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	86898315	rs3737159	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:78,31:0.28:109
chr1	86906114	rs1981082	T	C	171.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	86913265	rs2275001	C	T	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=4.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.582;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:270,120:0.31:390
chr1	86920904	rs2390057	A	G	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.294;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:315,124:0.28:439
chr1	86939130	rs2145412	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	86939390	rs2180762	G	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	86952324	rs2734705	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	86956785	rs2753342	C	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86959173	rs2791494	T	C	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	86959796	rs1321689	C	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	86965419	rs1882753	T	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	87036746	rs772599	C	A	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	87045896	rs4001061	TCCTACA	T	15801.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,364:0.99:366
chr1	87101245	rs2292831	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	87101375	rs2292830	C	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr1	87102593	rs41286592	T	C	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,83:0.34:247
chr1	87185387	rs201175409	CATATT	C	1014.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr1	87185449	rs263465	T	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr1	87190114	rs74097421	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=0.799;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	87195862	rs74097428	A	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.033;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr1	87200729	rs263483	C	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:308,130:0.30:438
chr1	87207800	rs166415	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	87208953	rs7805	T	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr1	87368917	rs573680	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	87369176	rs571015	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	87380929	rs114120960	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr1	87458695	rs10873810	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr1	87538182	rs34124612	TTG	T	1807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.695;QD=22.32;ReadPosRankSum=1.816;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:25,56:0.69:81
chr1	87538200	rs10782592	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=36.77;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	87549858	rs2798675	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	87558066	rs66709085	CCACATA	C	323.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	87563388	rs113186720	A	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.076;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	87563668	rs1199677	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	87570398	rs1621247	G	A	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.677;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:52,110:0.68:162
chr1	87598117	rs6686259	T	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	87599697	rs6576865	G	A	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	87633761	rs10782593	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	87797957	rs77586397	G	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.366;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:189,60:0.24:249
chr1	89150150	.	G	GT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.853;QD=1.10;ReadPosRankSum=-0.758;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr1	89225976	rs430600	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	89236029	rs7541301	T	A	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:58,102:0.64:160
chr1	89271574	rs786906	T	C	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:87,173:0.67:260
chr1	89280965	rs786918	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr1	89298290	rs76636987	ATTG	A	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	89322982	rs2794318	G	A	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	89357300	rs7536541	G	A	11090.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:245,525:0.68:770
chr1	89418578	rs10922526	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.91;ReadPosRankSum=-1.545;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	89420825	rs12095620	A	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:123,55:0.31:178
chr1	89426813	rs6657572	C	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.723;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr1	89426956	rs12063768	C	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:169,89:0.34:258
chr1	89427251	rs7513592	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	89473522	rs11808228	A	G	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:253,138:0.35:391
chr1	89474818	rs17433780	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr1	89475230	rs4142706	T	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.906;QD=4.51;ReadPosRankSum=1.592;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:98,42:0.30:140
chr1	89477830	rs6659829	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.111;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.18;ReadPosRankSum=0.001;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	89478854	rs4656076	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	89478868	rs113490655	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	89479063	rs4656077	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr1	89479074	rs4656078	C	T	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr1	89479755	rs12091541	G	A	2927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=6.45;ReadPosRankSum=2.189;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:289,165:0.36:454
chr1	89479758	rs3795543	T	C	15232.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=32.34;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	89481130	rs72967452	A	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr1	89486037	rs7555039	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	89520329	rs72054220	GAAAAAC	G	1913.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr1	89520574	rs10922554	C	A	3627.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.185;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.917;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=-0.099;QD=26.29;ReadPosRankSum=1.239;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr1	89520636	rs10922555	G	A	1540.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;MQRankSum=1.595;QD=40.55;ReadPosRankSum=-0.917;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	89520643	rs10922556	C	T	1509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.22;MQRankSum=1.504;QD=43.14;ReadPosRankSum=-0.769;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr1	89521841	rs1048443	G	C	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=1.428;QD=2.93;ReadPosRankSum=-1.615;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:172,54:0.24:226
chr1	89522512	rs4376712	C	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:72,100:0.58:172
chr1	89522646	rs1048425	G	C	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	89528855	rs111920124	C	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:324,182:0.36:506
chr1	89574026	rs1329119	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	89575677	rs2026043	T	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	89579941	rs2230338	T	C	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=26.00;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	89582690	rs1803632	G	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	89583544	rs2209956	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	89597755	rs942442	T	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	89607479	rs6666846	G	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.09;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	89607486	rs6658235	T	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	89615979	rs586609	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	89618472	rs10710842	GA	G	409.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.650;QD=9.76;ReadPosRankSum=1.307;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr1	89637578	rs676913	G	A	13096.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	89650850	rs623134	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	89652070	rs142011957	C	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:106,81:0.43:187
chr1	89652071	rs561042	TC	CT	4052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.154;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-4.955;QD=22.03;ReadPosRankSum=0.400;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:81,103:0.56:184
chr1	89652078	rs608339	A	T	4130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-4.872;QD=22.57;ReadPosRankSum=1.043;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:79,104:0.57:183
chr1	89652087	rs1142890	CC	TG	4043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.644;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-5.319;QD=23.37;ReadPosRankSum=1.860;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:80,93:0.54:173
chr1	89652090	rs1142888	T	G	3629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.349;QD=20.86;ReadPosRankSum=1.572;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:81,93:0.53:174
chr1	89652094	rs1142887	G	A	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-5.381;QD=21.43;ReadPosRankSum=1.322;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:81,92:0.53:173
chr1	89652097	rs1142886	C	T	3581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-5.507;QD=20.70;ReadPosRankSum=1.787;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:83,90:0.52:173
chr1	89652102	rs655260	A	T	3510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-5.383;QD=20.77;ReadPosRankSum=0.993;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:79,90:0.53:169
chr1	89652846	rs12129014	G	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.749;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:118,42:0.26:160
chr1	89661228	rs650448	T	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	89726592	rs535351	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	89727870	rs76346754	A	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	89732237	rs61729628	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	89735314	rs3806338	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr1	89845926	rs11361992	GT	G	3681.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=21.92;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	89847372	rs4658359	G	T	8952.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	89847411	rs4658360	C	T	7727.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	89847444	rs4658146	A	G	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr1	89849201	rs928652	C	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	89849350	rs928653	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	89849441	rs928654	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	89849574	rs928655	G	A	206.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	89849742	rs959460	A	T	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	89851100	rs369061637	G	GT,GTT	506.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=0.691;SOR=1.675;set=HC	GT:AD:AF:DP	1/2:2,14,13:0.48,0.45:29
chr1	89885854	rs6673154	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	89888530	rs4261099	C	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	89888552	rs4282800	T	A	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	89888585	rs4415545	C	G	14175.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.19;QD=45.00;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	89888588	rs4506445	G	T	14258.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=43.60;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	90048189	rs186128107	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr1	90171835	rs6657969	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	90178743	rs474536	A	G	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	90470915	rs11808927	T	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	90475895	rs77529185	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	90486412	rs2816881	T	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.609;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:127,57:0.31:184
chr1	90493026	rs10922744	G	A	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=2.023;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:93,60:0.39:153
chr1	91383589	rs2448020	T	G	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr1	91402917	rs143274609	T	TA	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	91447985	rs358691	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.07;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	91728053	rs585898	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	91728202	rs555432	T	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	91731756	rs75935068	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.942;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	91739208	rs281964	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	91739414	rs281963	G	A	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	91739457	.	A	C	23	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=4;HapScore=2;MGOF=14;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=23;QD=28.8856062736;SC=TATAAACAAAAATAATGATTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=91739465;WS=91739447;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	91742055	rs281959	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-2.936;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	91781304	rs281991	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	91781413	rs281992	T	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.206;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	91781576	rs12568483	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-1.282;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	91782011	rs74843031	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.161;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr1	91784887	rs10493845	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr1	91793877	rs281972	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	91804353	rs78167983	C	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr1	91813184	rs281936	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	91841301	rs282036	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	91844815	rs4658219	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	91846374	rs282033	C	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	91846595	rs5776097	T	TA	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.36;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	91846654	rs282032	A	T	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	91850826	rs147504208	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.83;ReadPosRankSum=-0.502;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	91850970	rs17131419	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	91851193	rs12144808	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	91851253	rs282026	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	91859795	rs282009	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	91866751	rs4658222	C	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	91870410	rs17131429	G	C	4948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-1.132;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:310,258:0.45:568
chr1	91967142	rs13447458	G	GC	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr1	91973557	rs553606	T	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	91974034	rs1876264	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	91980447	rs483532	A	G	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	91980649	rs10874758	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	91989572	rs488126	T	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	92107937	rs4658107	C	T	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.891;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:64,65:0.50:129
chr1	92108119	rs12044983	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	92108622	rs61746485	A	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,55:0.34:160
chr1	92108899	rs2493202	C	T	9445.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	92108976	rs2478176	T	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:108,106:0.50:214
chr1	92109056	rs11808586	G	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:104,79:0.43:183
chr1	92174260	rs284878	A	G	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	92181678	rs2029355	T	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	92182292	rs11466600	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr1	92184744	rs4658261	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	92184814	rs7524066	G	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr1	92195601	rs10783002	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	92200593	rs11165376	A	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr1	92200597	rs12124904	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr1	92200627	rs10874913	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	92262874	rs2810904	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	92428495	rs10783071	C	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr1	92430435	.	CGT	C	120	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-0.180;QD=17.14;ReadPosRankSum=-1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	92446398	rs2303967	T	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	92447004	rs10875104	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	92457843	rs10747493	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.631;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	92467626	rs78267346	A	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:136,78:0.36:214
chr1	92516055	.	G	T	74.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	92568263	rs527412	A	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	92573670	rs11166163	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr1	92604844	rs79345425	A	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	92634261	rs12085789	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	92645934	rs17131606	G	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.557;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:106,66:0.38:172
chr1	92645953	rs7552286	G	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr1	92647223	rs560389	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	92647250	rs202046423	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr1	92647532	rs565156	C	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	92647861	rs566576	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:49,76:0.61:125
chr1	92706263	rs68023677	TAGAA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	92710990	rs147765631	T	TG	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.52;ReadPosRankSum=0.561;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	92712266	rs974924	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	92757256	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	92763091	rs372630078	CA	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.115;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	92764828	rs10875348	T	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	92789305	rs12065163	T	C	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.648;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:26,37:0.59:63
chr1	92802061	rs72960809	A	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	92852504	rs10747411	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	92944314	rs72390746	CAG	C	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.728;QD=16.76;ReadPosRankSum=-0.728;SOR=1.715;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	92946479	rs11164605	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr1	92979354	rs6603979	A	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:138,115:0.45:253
chr1	93029453	rs6656432	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	93029479	rs68039687	A	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=-2.076;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	93071048	rs2050597	G	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr1	93089823	rs7514716	T	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr1	93128854	rs10747450	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	93128937	rs41286813	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	93159821	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.183;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	93160902	rs2391199	T	C	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.507;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:78,62:0.44:140
chr1	93163385	rs7418336	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr1	93163633	rs1017008	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	93167854	rs10218670	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	93297620	rs143326916	C	G	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr1	93306281	rs115931438	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:73,81:0.53:154
chr1	93306317	rs10874744	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:86,65:0.43:151
chr1	93426866	rs945629	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.67;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	93426869	rs1415069	G	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.458;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr1	93545157	rs2815419	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr1	93580581	rs2815427	G	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	93580992	rs566843	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr1	93581024	rs2295423	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr1	93602194	rs2281524	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	93620393	rs1060622	G	A	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.127;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:158,132:0.46:290
chr1	93621483	rs1057257	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.52;ReadPosRankSum=0.210;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	93646207	rs2297707	T	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:88,82:0.48:170
chr1	93649732	rs6682670	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	93659350	rs2815411	A	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	93672723	rs2815413	A	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	93676314	rs555161	A	G	55.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	93676578	rs797676	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	93683210	rs624131	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	93683463	rs6671070	G	A	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	93692070	rs72959204	A	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=1.440;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	93698222	rs661566	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=1.465;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	93704899	rs201726385	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr1	93720153	rs61729705	G	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.301;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr1	93913871	.	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.680;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr1	93998640	rs34814765	AT	A	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	94012287	rs237425	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	94016601	rs61754552	C	T	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.998;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:57,43:0.43:100
chr1	94027729	.	CAGTA	C	1333.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr1	94041787	rs25569	G	GAC	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.39;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	94312482	rs5776191	T	TC	19735.73	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.56;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr1	94312528	rs147446599	G	GC	14321.73	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=43.40;SOR=1.713;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	94312533	rs202198870	G	GC	13787.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=45.06;SOR=2.065;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	94312542	.	G	GC	12337.73	.	AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=46.73;SOR=2.321;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	94312544	.	G	GC	11887.73	.	AC=2;AF=1.00;AN=2;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.13;SOR=2.431;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	94312554	.	A	AG	9637.73	.	AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=2.431;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	94312558	.	G	GC	2992.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=-1.421;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:88,86:0.49:174
chr1	94312559	.	CGGCTGGGTCGGGCG	C	3120.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.999;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=1.678;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:86,88:0.51:174
chr1	94312566	rs2391318	G	T	3003.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.172;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=-2.479;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:88,80:0.48:168
chr1	94312567	rs2391319	T	C	2945.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.114;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-2.576;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:88,79:0.47:167
chr1	94312571	.	G	GC	2699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-2.316;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:88,70:0.44:158
chr1	94312573	.	G	GC	2520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-2.156;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:88,64:0.42:152
chr1	94312576	.	G	GC	7342.73	.	AC=2;AF=1.00;AN=2;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.99;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	94312579	.	G	GT,GC	6047.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=43.20;SOR=2.203;set=HC	GT:AD:AF:DP	1/2:0,87,53:0.62,0.38:140
chr1	94312584	rs200230769	G	GC	5760.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.22;SOR=2.010;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	94335194	rs1051394	A	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	94335585	rs2273167	G	C	75.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.17;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	94341137	rs2273166	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	94341267	rs2273165	A	G	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-2.223;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:93,86:0.48:179
chr1	94343233	rs3789457	T	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	94344580	rs6675820	C	A	3236.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.97;ReadPosRankSum=-0.778;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,119:0.99:120
chr1	94344840	rs6681078	A	C	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr1	94360107	rs769211	C	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	94367097	rs7515191	G	A	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	94374576	rs2273406	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr1	94374742	rs743119	C	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	94471075	rs1762114	A	G	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	94476555	rs537831	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	94484221	rs185026488	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	94487285	rs55860151	AAC	A	645.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	94487354	rs472908	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,33:0.33:101
chr1	94487620	rs115406048	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr1	94495930	rs547806	T	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	94495952	rs75424561	T	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr1	94495970	rs75359153	G	A	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:81,92:0.53:173
chr1	94497662	.	AT	A	374.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr1	94528363	rs4147833	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr1	94544135	rs4147887	A	AC	1437.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	94544233	rs4147831	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr1	94544276	rs4147830	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	94544326	rs3215952	GT	G	3458.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	94545160	rs2275035	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	94549083	rs574741	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	94568491	rs4847278	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	94578548	rs4847281	T	C	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr1	94578763	rs74104524	C	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=0.544;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr1	94578772	rs72960501	C	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=7.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.43;ReadPosRankSum=0.300;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr1	94586455	rs74102103	T	C	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.197;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:104,76:0.42:180
chr1	94620168	rs1330862	G	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr1	94639337	rs1330858	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	94639388	rs146805532	CACA	C	2323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.180;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:78,62:0.44:140
chr1	94639447	rs1999272	C	T	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	94667430	rs5776210	G	GA	189.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;QD=18.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	94668046	rs1541099	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr1	94674723	rs6684237	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	94964139	rs201875475	AT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=3.042;QD=0.74;ReadPosRankSum=2.665;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr1	94964967	rs190738340	T	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	94980671	rs3118109	C	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	94982785	rs662813	A	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.53;ReadPosRankSum=1.732;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	95001600	rs698946	A	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	95211525	rs1333953	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr1	95285897	.	C	CCCCAGA	1302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=7.545;MLEAC=1;MLEAF=0.500;MQ=61.49;MQRankSum=4.011;QD=16.92;ReadPosRankSum=1.381;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr1	95286085	rs11165252	G	A	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.681;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:127,94:0.43:221
chr1	95286094	rs10782992	G	T	3394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.165;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:121,92:0.43:213
chr1	95290305	rs6541372	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.64;ReadPosRankSum=1.358;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	95290315	rs36094793	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.96;ReadPosRankSum=1.282;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	95291366	rs10874894	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr1	95305440	rs859120	A	G	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:168,120:0.42:288
chr1	95330372	rs859098	G	A	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:109,117:0.52:226
chr1	95332864	rs12137650	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr1	95333068	rs859096	G	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr1	95358096	rs859063	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	95360300	rs201953661	GT	G	60.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	95360319	rs17112707	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	95364845	rs11449294	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=2.537;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	95367108	rs10605235	ACC	A	52.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=17.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	95367136	rs859059	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	95367649	rs859058	T	C	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	95367894	rs859057	A	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	95369198	rs11165268	G	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr1	95369211	rs859054	T	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	95427041	rs3831103	AT	A	542	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:5,36:0.88:41
chr1	95428414	rs2766005	G	A	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	95428455	rs60283438	C	CT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.384;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	95448619	rs143040411	C	T	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr1	95530591	rs12751061	A	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:60,73:0.55:133
chr1	95530709	rs6674467	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.55;ReadPosRankSum=1.644;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	95614215	rs76921353	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	95615678	rs76086699	T	C	87.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.59;ReadPosRankSum=-1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	95615748	rs71876426	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.465;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	95615888	rs35206271	T	C	306.41	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	95696612	rs6663164	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr1	95705615	rs640527	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.765;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.852;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	95709821	rs259358	T	C	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	95709939	rs2296308	T	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:104,74:0.42:178
chr1	95712050	rs148395594	TGAGACTCA	T	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	97187338	rs78937624	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:143,109:0.43:252
chr1	97189091	rs3762411	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	97235439	rs41300329	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.289;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr1	97236130	rs3762409	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	97243023	rs17115729	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	97272456	rs6699932	A	G	1798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.621;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:78,91:0.54:169
chr1	97278804	rs273886	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	97279079	rs138277715	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.621;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	97547831	rs290854	G	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	97848041	rs12078940	T	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.106;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	97981242	rs2811178	T	C	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	98206158	rs41309171	C	G	70.82	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	98348885	rs1801265	G	A	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	98349390	rs111231337	C	CA	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=20.08;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	98510679	.	G	GAAAC	3610.73	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:89,91:0.51:180
chr1	99127205	rs12723363	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	99127392	rs9728148	T	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	99150635	rs9433747	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.418;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	99164246	.	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=2.280;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr1	99164434	rs6577322	G	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr1	99225627	rs2019213	G	A	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	99358542	rs55842403	C	T	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr1	99358664	rs61510532	C	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,92:0.49:186
chr1	99358761	rs7524256	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	99387628	rs34854879	T	TA	2351.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr1	99418911	.	T	TTGTGTG	232.77	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	99470269	rs12057990	T	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr1	99753631	rs35121076	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr1	100111956	rs834997	A	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-1.534;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,34:0.41:82
chr1	100152443	rs1338576	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	100182884	rs6696586	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr1	100185282	rs6679013	G	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	100194200	rs149243286	C	CAA	4532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=3.474;QD=15.90;ReadPosRankSum=-2.204;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:140,145:0.51:285
chr1	100194305	rs7522921	C	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr1	100203501	rs7537095	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	100203571	rs7548709	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr1	100203597	rs7513916	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr1	100203648	rs7537296	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:94,77:0.45:171
chr1	100203693	rs7514021	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,76:0.45:169
chr1	100212793	rs78283640	G	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	100214391	rs1416237	T	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.32;ReadPosRankSum=-1.258;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	100316589	rs2307130	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr1	100316765	rs663848	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	100327088	rs35278779	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr1	100329889	rs535461	G	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr1	100336361	rs2230306	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.150;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	100342227	rs3736295	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	100346741	rs3736296	T	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr1	100350317	rs28730703	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	100353675	rs555929	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:144,121:0.46:265
chr1	100356848	rs34714252	C	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.515;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:38,39:0.51:77
chr1	100358200	rs594249	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr1	100368382	rs834575	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr1	100376448	rs2274570	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=0.127;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	100376456	rs1541041	T	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.10;ReadPosRankSum=2.188;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	100459021	rs74647865	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-1.027;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	100472604	rs534252	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr1	100481062	.	AG	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=6;HapScore=2;MGOF=5;MMLQ=26;MQ=60.0;NF=0;NR=2;PP=22;QD=26.5;SC=TACTGATGTGAGGGGGAAAAG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=100481070;WS=100481052;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr1	100488177	rs482466	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr1	100503993	rs1395332	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr1	100515497	rs17121792	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:98,74:0.43:172
chr1	100543962	rs644835	A	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr1	100572459	rs17121889	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	100584746	rs6662945	A	C	87.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.66;ReadPosRankSum=-0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	100587146	rs17418475	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	100598866	rs472498	GC	AT	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;JOINED;set=Intersection	GT:AD:AF:DP	0/1:57,83:0.59:140
chr1	100602506	rs144353071	G	GT	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.411;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	100609639	rs6681721	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-2.006;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr1	100609743	rs41287244	T	G	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr1	100617887	rs2784177	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	100661987	.	GAAAAAA	G	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=-0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=2.041;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	100672060	rs12021720	T	C	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	100680593	rs11431894	C	CT	96.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.396;QD=7.44;ReadPosRankSum=-1.286;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	100715454	rs3806235	G	A	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:141,121:0.46:262
chr1	100733207	rs60634058	G	GT,GTT	2252.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.269;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.260;SOR=0.400;set=HC	GT:AD:AF:DP	1/2:20,75,55:0.50,0.37:150
chr1	100733552	rs4298755	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	100750733	rs58046505	AGTTTT	A	3040.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	100750943	rs80144761	A	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	100817384	rs28361189	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr1	100818464	rs594529	T	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	100818694	rs502955	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr1	100819273	rs2297170	T	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	100856479	rs28361213	C	T	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr1	100908577	rs78861171	A	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr1	100908678	rs78315260	G	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	100949860	rs2270694	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.586;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	100961779	rs149672640	ATT	A	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.674;QD=7.54;ReadPosRankSum=-0.614;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	100970346	rs10875295	T	C	3450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-0.512;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:173,177:0.51:350
chr1	101005090	rs2809819	G	A	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	101190173	rs2392221	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr1	101194965	rs68164684	G	GT	175.74	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	101203827	rs3176879	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	101372607	rs4908106	C	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	101466983	rs140266066	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	101473896	.	C	A	1676.77	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr1	101476786	rs34915449	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.644;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	101476800	rs35409691	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.55;ReadPosRankSum=-0.388;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	101476814	rs17123612	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=-0.920;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	101491108	rs7521668	C	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr1	101491138	rs192495268	G	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	102271774	rs4907955	G	A	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	102462446	rs67744758	GTCAGT	G	1195.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr1	103348653	rs74108030	A	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-0.539;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr1	103354138	rs1676486	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	103354472	rs145901197	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr1	103354939	.	C	CTG	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=0.465;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	103363633	rs114611626	T	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-1.853;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	103379828	rs145342760	A	AT	167.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	103380241	rs77901108	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-0.458;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	103412652	rs111784238	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	103427381	rs1012282	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr1	103428389	rs1841834	G	A	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	103444125	rs2616018	A	C	60.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	103444497	rs1903787	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	103445223	rs2622846	G	A	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	103449598	rs2615978	G	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	103455217	rs1463034	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	103461508	rs2622867	T	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	103462473	rs2786125	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	103462547	rs2622869	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr1	103463976	rs2622870	G	T	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	103467615	rs2929162	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	103468295	rs2622875	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr1	103468609	rs2251895	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	103468855	.	T	TA	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.013;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr1	103471456	rs71752747	CCAT	C	2994.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:57,79:0.58:136
chr1	103471734	rs139103462	AAAATAAAT	A,AAAATAAATAAATAAATAAAT	2980.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.83;SOR=1.042;set=HC	GT:AD:AF:DP	1/2:0,38,35:0.52,0.48:73
chr1	103477819	rs2786122	A	G	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	103477825	rs35117641	A	AT	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	103483514	rs945748	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	103487244	rs34587338	T	C	4927.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:209,244:0.54:453
chr1	103487394	rs35291481	CT	C	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=9.555;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.862;SOR=2.886;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr1	103488173	rs34229612	G	A	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	103488602	rs111390852	TAA	T	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	103491461	rs12731843	T	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr1	103491569	rs12750407	G	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.07;ReadPosRankSum=0.000;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	103491572	rs12750147	C	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.07;ReadPosRankSum=-0.216;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	103496620	rs7523441	G	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	103496792	rs71664966	A	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.666;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr1	103496805	rs36076089	GA	G	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.75;ReadPosRankSum=-0.597;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	103496875	rs71664967	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	103544191	rs6668897	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=2.272;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	103544434	rs12136865	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	103548319	rs11164662	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	103573547	rs6691654	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	104076462	rs6697444	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.534;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	104076495	rs6702220	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	104076537	rs6702324	A	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	104080169	rs10736038	G	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.792;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	104084226	rs10881232	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	104086145	rs10785725	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	104089727	rs145658761	A	C	126.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	104089773	rs7529928	C	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	107946262	rs12126267	G	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=15.238;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.509;QD=10.26;ReadPosRankSum=0.571;SOR=2.784;set=HC	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	107946324	rs35555244	C	CA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.662;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:138,46:0.25:184
chr1	107979396	rs480392	A	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr1	108138772	rs17019483	A	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr1	108139003	rs3748702	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	108152332	rs1328208	T	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	108160260	rs5776894	GA	G	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.245;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:47,57:0.55:104
chr1	108292260	rs6672483	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	108299775	rs34437461	ATG	A	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	108299809	rs12138353	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	108307642	rs7514025	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	108311160	rs116635986	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	108313258	rs6583048	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	108315305	rs4611048	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	108697497	rs75988329	A	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	108724518	rs490680	A	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=1.001;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr1	108724693	rs491785	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	108728562	rs114771768	A	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.935;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	108734993	rs521545	G	C	288.56	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	108735212	rs79735952	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	108742632	rs6671207	C	T	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:295,243:0.45:538
chr1	109008061	.	G	A	40.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	109010261	rs139572545	G	A	5046.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:102,240:0.70:342
chr1	109013340	rs9440563	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr1	109103031	rs113771630	G	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-2.947;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr1	109103207	rs72978732	G	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr1	109143457	rs7534348	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.000;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	109154974	rs2358522	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	109170746	rs2133198	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr1	109173662	rs6666132	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	109200154	rs11806189	C	T	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=0.841;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:90,55:0.38:145
chr1	109238825	rs61150899	A	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr1	109255513	rs3006864	G	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	109265029	rs4423040	G	T	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.961;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:75,78:0.51:153
chr1	109268441	rs11582005	G	A	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr1	109268573	rs4494160	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:77,60:0.44:137
chr1	109270832	rs140399470	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	109273456	rs4970809	A	G	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.433;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:131,131:0.50:262
chr1	109273610	rs4970810	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr1	109289487	rs6604120	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.10;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	109301250	rs1277042	G	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=1.748;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr1	109315211	rs1623641	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	109321824	rs1759481	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	109336355	.	G	A	151.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	109337572	rs1149158	A	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	109339414	rs35138668	GT	G	190.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-1.371;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr1	109342716	rs1277239	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=1.368;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	109350009	rs371859415	A	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.763;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr1	109351501	rs1149154	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	109363075	rs1333128	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	109363140	rs1333129	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	109363232	rs1333130	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	109366370	rs7522260	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr1	109369791	rs11102505	G	A	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.425;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr1	109369797	rs11102506	T	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.012;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	109369915	rs7551421	G	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.266;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr1	109372968	rs1277221	T	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	109377070	rs12060255	C	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	109377157	rs112859436	T	TA	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.601;QD=8.14;ReadPosRankSum=0.736;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr1	109377283	rs12063387	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	109377334	rs12061417	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	109377537	rs12057309	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	109391486	rs1149142	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	109394978	rs17563390	G	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chr1	109395105	rs1277207	C	T	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	109428249	rs10857987	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	109439400	rs75774985	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	109456850	rs1664419	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	109465165	rs35029887	ACTT	A	5675.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:167,148:0.47:315
chr1	109466858	rs705268	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr1	109474221	rs1769740	C	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.873;QD=11.97;ReadPosRankSum=-0.141;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	109474250	rs66470959	T	TAA	160.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.319;QD=11.48;ReadPosRankSum=1.456;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	109477653	rs839850	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	109479978	rs168107	G	T	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:133,112:0.46:245
chr1	109482173	rs9661060	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	109482826	rs338479	C	T	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.186;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=1.218;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:64,58:0.48:122
chr1	109483975	rs193139	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-1.974;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr1	109486196	rs338466	A	G	7812.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	109486240	rs3215062	TA	T	8341.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	109490457	rs839543	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	109493134	rs34131552	G	GTTA	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	109524584	rs487901	C	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr1	109529322	rs61696019	T	TAA	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	109545046	rs184606	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	109635398	rs512671	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	109648870	rs533212	C	G	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	109650386	rs75965052	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	109650484	rs113809565	G	GA	190.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=0.957;QD=10.04;ReadPosRankSum=-1.393;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	109656420	rs536176	T	C	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	109656946	rs667524	T	C	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	109656981	rs586530	T	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	109704390	rs643197	C	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	109704435	rs150092533	T	C	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,72:0.47:152
chr1	109704618	rs678238	A	G	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	109714750	rs2297758	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	109714919	rs2297757	A	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	109727475	rs649531	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=-1.645;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	109727653	rs112642730	CT	C	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.298;QD=9.10;ReadPosRankSum=-1.752;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr1	109727832	rs12239854	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.174;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	109734157	rs606066	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr1	109734541	rs645128	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	109735304	rs146489407	C	T	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:95,118:0.55:213
chr1	109737132	rs2359244	T	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:99,114:0.54:213
chr1	109740004	rs116781367	T	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	109740293	rs138864240	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	109740310	rs10573144	AGT	A	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	109745618	rs1052878	T	C	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	109771063	rs683182	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:104,79:0.43:183
chr1	109771881	rs657511	G	T	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	109773427	.	C	CAA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.747;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr1	109773705	.	AT	A	46.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=9.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	109778577	rs658092	T	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	109779556	rs631927	T	A	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	109779621	rs11439617	T	TC	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	109779934	rs148902081	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:120,83:0.41:203
chr1	109792735	rs144034706	A	ACGC	1310.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr1	109794252	rs454107	T	C	15989.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr1	109795026	rs413380	T	C	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	109795233	rs151136134	T	C	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:159,178:0.53:337
chr1	109795608	rs437444	T	C	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr1	109796053	rs2359414	C	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr1	109801106	rs79223332	C	T	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.844;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:182,148:0.45:330
chr1	109801121	rs684138	C	T	3766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-2.261;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:214,196:0.48:410
chr1	109806313	rs653635	T	C	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:325,247:0.43:572
chr1	109806442	rs1337248	C	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr1	109807186	rs74763583	C	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:178,143:0.45:321
chr1	109810136	rs200641798	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr1	109811763	rs115995897	C	T	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:200,150:0.43:350
chr1	109812136	rs75497225	C	T	4325.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:201,214:0.52:415
chr1	109812606	rs17035649	A	G	7312.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:416,379:0.48:795
chr1	109813020	rs3895559	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr1	109813236	rs111491315	TTCCCAGTCTTGGGG	T	4319.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:154,115:0.43:269
chr1	109813485	rs41279714	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	109816176	rs441853	A	C	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	109816555	rs149406305	C	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:90,105:0.54:195
chr1	109823220	rs72975244	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,47:0.41:115
chr1	109824146	rs115042915	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	109825360	rs643457	C	T	178.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	109836842	rs646335	C	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	109838833	rs616899	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109838918	rs629001	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr1	109839063	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.082;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	109839400	rs55660224	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr1	109839433	rs1278285	A	G	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:120,91:0.43:211
chr1	109839738	rs3850615	C	A	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:128,123:0.49:251
chr1	109839896	rs7515901	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr1	109839954	rs603624	G	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	109856842	rs372331171	TG	T	1056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=18.005;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.877;QD=15.10;ReadPosRankSum=1.009;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:17,53:0.76:70
chr1	109867673	rs149226217	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.352;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr1	109869928	rs58644993	G	A	368.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	109878709	rs11799882	A	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	109879050	rs11799329	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr1	109883576	rs3217347	C	CAT	2122.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	109884775	rs2228604	T	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	109890258	rs11802245	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:86,40:0.32:126
chr1	109897103	rs11142	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	109898263	rs143094090	A	ACC	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=40.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	109912221	rs10708090	GA	G	2171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.109;QD=7.12;ReadPosRankSum=-0.835;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:167,138:0.45:305
chr1	109952795	rs76438471	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.15;ReadPosRankSum=-0.126;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	109958035	rs1465607	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	110009434	rs2787015	A	C	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	110009654	rs138525393	AC	A	2474.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:142,105:0.43:247
chr1	110018148	rs530565	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	110019415	rs79613472	A	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr1	110019585	rs75551446	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:138,96:0.41:234
chr1	110020341	rs57128261	C	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr1	110035318	rs34382032	AT	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.92;ReadPosRankSum=-0.619;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	110038940	rs182371117	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	110086451	rs17575798	G	A	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:117,169:0.59:286
chr1	110091271	rs3737182	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	110129582	.	C	CT	96.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	110141421	rs1889470	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	110148764	rs72987059	C	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.661;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:64,40:0.38:104
chr1	110163076	rs6669802	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.884;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	110163879	rs28362581	G	A	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr1	110164657	rs12046107	A	G	134.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	110164963	rs12028540	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr1	110168280	rs116223306	C	T	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:131,128:0.49:259
chr1	110168888	rs493972	C	G	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	110169957	rs524998	A	G	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	110170896	rs863978	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	110171705	rs523786	A	C	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	110172346	rs5776989	T	TG	1032.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	110172362	rs2269341	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr1	110199172	rs60189163	CTG	C	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;QD=21.39;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	110201580	rs650985	C	T	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	110201699	rs506008	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr1	110201809	rs562996	G	T	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.783;QD=14.27;ReadPosRankSum=-1.495;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:126,79:0.39:205
chr1	110201812	rs563003	A	G	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.848;QD=6.25;ReadPosRankSum=-0.398;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:137,80:0.37:217
chr1	110210671	rs625456	G	T	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.057;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:112,129:0.54:241
chr1	110210780	rs530021	C	G	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	110212293	rs3819350	C	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr1	110215684	rs148093404	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	110230331	rs36208868	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	110230628	rs145941576	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	110230767	rs10857795	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	110232087	rs4147566	C	T	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	110233147	rs1056806	C	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	110252010	rs1292098	T	C	11269.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=25.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr1	110255167	rs12736389	G	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	110256220	rs7536162	A	C	10456.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr1	110279602	rs2234696	T	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	110279914	rs1571858	C	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:76,73:0.49:149
chr1	110280252	rs36120609	ATCC	A	3513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.899;QD=17.31;ReadPosRankSum=-1.933;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:110,93:0.46:203
chr1	110281941	rs10735234	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	110282972	rs1332018	G	T	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:124,134:0.52:258
chr1	110292938	rs148530481	CG	C	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	110294483	rs6674722	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	110294577	rs2274536	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.977;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:116,49:0.30:165
chr1	110295264	rs57530127	T	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr1	110295772	rs1887547	T	C	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	110295890	rs1887548	C	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	110299550	rs2094469	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr1	110300441	rs3818562	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.305;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:53,59:0.53:112
chr1	110300504	rs10776700	A	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	110300734	rs72991171	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.012;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr1	110301260	rs6693815	C	T	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.251;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr1	110301766	.	AGTGTGTGTGT	A,AGTGTGT,AGTGT	1219.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=42;set=Intersection	GT:AF:DP	1/2:0.29,0.71:34
chr1	110302603	rs112400349	C	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	110304451	rs111701055	G	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.272;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:101,100:0.50:201
chr1	110304537	rs6676659	G	A	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	110466709	rs333971	T	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	110467745	rs333972	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	110557313	rs12093312	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr1	110558276	rs11384766	A	AC	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	110581780	rs1834	T	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr1	110593707	rs6694295	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr1	110603286	rs144523285	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	1749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=14.027;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=6.634;QD=18.23;ReadPosRankSum=-0.612;SOR=2.322;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr1	110603940	rs72190140	AGTG	A	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr1	110735037	rs2603583	T	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	110740931	rs6685009	G	A	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	110754052	rs114915950	A	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.343;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	110765535	rs611587	C	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	110765651	rs144767142	T	C	3669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.049;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:180,191:0.51:371
chr1	110882444	rs814771	A	G	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	110884493	rs61745292	T	C	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr1	110888948	rs61787373	G	A	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=3.098;QD=9.79;ReadPosRankSum=0.459;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:77,73:0.49:150
chr1	110932050	rs111381257	G	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr1	110949720	rs6671673	C	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	110949857	rs6684395	A	T	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	110993739	rs3806451	C	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	110996652	rs62623571	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,73:0.59:123
chr1	110998766	rs7551116	T	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	110998854	rs7514102	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr1	111059825	rs3768457	G	A	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.163;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr1	111060669	rs1281175	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:76,95:0.56:171
chr1	111061011	rs3748731	C	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,68:0.44:156
chr1	111061062	rs1281174	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:103,78:0.43:181
chr1	111144526	rs4839071	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	111436857	rs1578956	TC	GT	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;JOINED;set=Intersection	GT:AD:AF:DP	0/1:101,81:0.45:182
chr1	111437129	rs1343817	A	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	111441829	rs1803259	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:127,78:0.38:205
chr1	111661413	rs325916	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr1	111661528	rs325917	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.891;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr1	111662723	rs325918	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.602;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	111726026	rs2243393	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr1	111726213	rs694180	A	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	111737183	rs660173	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	111737398	rs9970286	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.060;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	111739771	rs3833538	G	GCAGGACAAA	8740.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	111740671	rs17027074	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr1	111742838	rs639306	G	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	111770423	rs755467	T	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr1	111770531	rs58006689	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	111778241	rs2764544	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	111778330	rs34049547	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr1	111778824	rs2251608	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	111783996	rs2494007	A	G	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	111784148	rs2764551	T	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	111784816	rs11102221	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr1	111785930	rs1056825	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	111785979	rs76388937	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	111825883	rs4406629	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:100,123:0.55:223
chr1	111826055	rs12140873	A	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=1.207;QD=7.69;ReadPosRankSum=-2.985;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr1	111833441	rs11102235	G	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr1	111833488	rs34698010	C	CCT	4628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.834;QD=17.21;ReadPosRankSum=-0.328;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:142,127:0.47:269
chr1	111833517	rs12026825	G	A	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.474;QD=9.07;ReadPosRankSum=0.450;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:107,98:0.48:205
chr1	111854755	rs4423003	A	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	111857087	rs2786151	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	111857107	rs56003810	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	111857120	rs3818820	C	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	111857154	rs2786152	T	C	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	111857208	rs3818822	G	A	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	111857276	rs41391244	T	C	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	111858291	rs2786155	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	111858444	rs2786156	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	111858499	rs6661725	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	3342.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.96;QD=43.98;SOR=2.365;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	CAATATAAGAATAAGACACTATCCTTGGCTT	2915	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=27;MQ=65.97;NF=0,6;NR=21,21;PP=2915,835;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=21,27;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:1,27:0.96:28
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	A	2915	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=27;MQ=65.97;NF=0,6;NR=21,21;PP=2915,835;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=21,27;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	3332.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.77;QD=43.28;SOR=2.395;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	111858589	rs2786157	G	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	111858603	rs2786158	G	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	111861714	rs2786161	T	A	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	111861841	rs2275253	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	111862074	rs2820092	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	111862952	rs2256721	T	G	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	111893768	.	A	G	497.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=28.537;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.248;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chr1	111894075	rs144662566	CA	C	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	111957097	rs7825	C	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	111957501	rs201350653	CTCACAGACTGATGACTCACAGGGG	C	4323.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	111957693	rs2485319	A	G	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	111958885	rs10489791	C	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	111962152	rs1419093	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	111962209	rs1419092	G	A	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	111969294	rs1264892	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	111969307	rs2275795	G	C	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	111969464	rs77106317	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	111969719	rs1264894	A	G	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	111970431	.	TACACACACACAC	TAC,T	346.52	.	AC=1,0;AF=0.500,0.00;AN=2;DP=57;set=Intersection	GT:AF:DP	0/1:0.91:11
chr1	111985229	rs1264902	G	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	112018657	rs6703267	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.673;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:73,51:0.41:124
chr1	112019547	rs116446242	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr1	112020238	rs2211494	A	C	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	112028275	rs113975311	C	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr1	112029193	rs2252739	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr1	112029325	rs2800906	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr1	112032126	rs58712964	T	C	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-1.269;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:70,77:0.52:147
chr1	112032131	rs61002431	T	G	3012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=-1.095;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:71,78:0.52:149
chr1	112032205	rs7544118	C	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:79,126:0.61:205
chr1	112042632	rs2229155	A	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr1	112106310	rs74112345	C	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	112106342	rs1591711	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr1	112106444	rs1591712	G	A	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	112234215	rs10489470	C	T	83.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	112240038	.	CT	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.708;QD=1.44;ReadPosRankSum=0.402;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:134,51:0.28:185
chr1	112240125	rs72991083	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:107,84:0.44:191
chr1	112269872	rs197434	G	A	13538.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	112305406	.	TA	T	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=2.432;QD=8.26;ReadPosRankSum=2.404;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:36,94:0.72:130
chr1	112321032	rs640029	T	A	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	112329551	rs3738298	G	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr1	112329838	rs11587284	G	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=1.050;SOR=1.465;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	112539061	rs2366125	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr1	112958723	rs12057798	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.92;ReadPosRankSum=-0.367;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	112991698	rs2256883	T	C	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr1	112991862	rs3818729	G	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr1	112999227	rs1175641	G	A	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	113033459	rs61820474	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	113052170	rs143921275	GT	G	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	113063125	rs910697	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr1	113083439	rs10745330	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=2.163;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	113113167	rs71584748	GTATATATATATATA	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	113126532	rs111718368	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr1	113159371	.	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.509;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	113202417	rs2932536	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr1	113232396	rs3748659	A	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,68:0.53:128
chr1	113234456	rs2932532	G	A	2263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.054;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:114,116:0.50:230
chr1	113236681	rs3748656	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:88,79:0.47:167
chr1	113237171	rs883593	A	G	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,94:0.48:195
chr1	113238665	rs71584764	T	TA	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	113239478	rs2999158	T	C	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr1	113240790	rs12133583	G	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr1	113241052	rs2306940	T	C	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,104:0.47:220
chr1	113241134	rs2306939	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr1	113242488	rs3013431	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:143,115:0.45:258
chr1	113243048	rs6679	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:113,87:0.43:200
chr1	113244433	rs2279500	T	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	113244455	rs1873295	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr1	113245353	rs2245013	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr1	113246229	rs937053	T	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	113248365	rs954679	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	113252614	rs41310100	C	A	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	113254484	rs4839258	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	113255389	rs10857971	C	T	213.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.39;ReadPosRankSum=0.126;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	113255686	.	T	TTGTG	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-0.000;QD=7.19;ReadPosRankSum=-0.256;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	113257571	rs58318895	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr1	113456546	rs1049434	A	T	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	113460676	rs149491709	CAATA	C	238.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	113460687	rs201021807	T	G	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	113636924	rs1216802	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	113638404	.	T	C	217.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	113657018	rs200615395	AT	A	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=2.786;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr1	113657092	rs1216793	A	C	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	113658887	rs1216791	G	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	113659065	rs10541977	ACT	A	9682.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	113666351	rs1728222	G	T	374.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.56;QD=41.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	113666353	rs1728223	G	T	374.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.56;QD=41.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	114092111	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.057;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	114092306	rs10858004	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	114137013	rs3834733	C	CAT	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	114161116	rs1217200	C	A	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	114189297	rs114039361	A	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	114191994	rs1743594	G	A	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	114224782	rs11438160	A	AT,ATT	3062.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.437;QD=17.02;ReadPosRankSum=-0.464;SOR=0.572;set=HC	GT:AD:AF:DP	1/2:27,51,102:0.28,0.57:180
chr1	114234690	rs12138638	C	T	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	114240319	rs3835263	T	TA	6427.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	114242250	rs3752953	C	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr1	114249382	rs6698586	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	114267347	rs1230640	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	114280717	rs2273758	A	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	114339956	rs34169583	C	CTAAA	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	114372332	rs57877024	TA	T	227.74	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	114377093	rs1599971	A	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	114377148	rs1970559	T	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	114377568	rs2476601	A	G	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr1	114391233	.	C	G	572.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr1	114400195	rs11386228	G	GA	41.75	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	114401231	rs1217418	A	G	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	114401904	rs1217419	T	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	114423653	rs1217382	C	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	114424601	rs1217381	C	T	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	114429340	rs1746860	T	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	114438951	rs1217401	A	G	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	114472218	rs1217441	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	114504860	rs41302825	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	114505000	rs17852555	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:115,109:0.49:224
chr1	114512939	rs3811018	A	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	114515717	rs2358996	G	A	7416.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:332,374:0.53:706
chr1	114523465	rs3789614	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	114634883	rs17032288	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	114641685	rs2774285	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	114646293	rs34039948	A	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr1	114680540	rs17032441	C	T	4458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.661;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:282,233:0.45:515
chr1	114682632	rs72690087	G	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr1	114940209	rs12062175	G	T	52.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	114940632	rs5777192	CA	C	687.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr1	114945394	rs2179657	G	A	2389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=1.693;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:142,127:0.47:269
chr1	114948281	rs6537825	A	G	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	114962936	rs74113173	C	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:171,122:0.42:293
chr1	114973429	rs12083584	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr1	115110989	.	C	CTT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.585;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	115128087	rs222493	A	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	115144703	rs28398	A	G	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	115165472	rs222502	T	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	115166350	rs148413143	ATTGT	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	115218413	rs2070986	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-2.483;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	115222434	rs761755	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	115229579	rs139585917	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	115238016	rs68036474	CA	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=1.665;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	115238263	.	A	C	1126.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr1	115256669	rs969273	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	115398044	rs60659641	GC	G	1126.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	115399777	.	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-0.000;QD=12.23;ReadPosRankSum=-0.343;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	115399884	rs17544210	C	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.433;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	115490046	rs12092844	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	115576023	rs10776792	A	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr1	115592972	rs17033067	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	115600081	rs3820630	G	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr1	115600137	rs3738704	A	G	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.887;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:75,51:0.40:126
chr1	115601528	rs3738702	C	G	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:132,122:0.48:254
chr1	115601615	rs7523818	A	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	115604681	rs11102881	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr1	115604798	rs10776795	C	T	7473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.916;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:404,390:0.49:794
chr1	115615358	rs753189	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	115631924	rs4240540	C	T	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	116194266	rs114530176	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	116206422	rs79828493	C	T	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:176,117:0.40:293
chr1	116224925	rs10923176	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.286;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:14,27:0.66:41
chr1	116224940	rs10754330	C	A	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.691;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:27,44:0.62:71
chr1	116225180	rs10923177	A	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr1	116228220	rs12145661	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr1	116243877	rs7413162	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	116245809	rs6667224	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	116247790	rs3811003	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	116283343	rs9428083	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,69:0.51:135
chr1	116283526	rs7538337	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr1	116287682	rs9428211	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	116311198	rs4074537	T	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	116569530	rs2488429	G	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	116577981	rs1935828	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	116605423	rs3748743	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr1	116607254	rs1281748	G	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	116655492	rs1146356	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	116666569	rs960675	T	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	116666710	rs767832	C	T	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:159,174:0.52:333
chr1	116670774	rs10754431	A	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	116670990	.	AG	A	26	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=4;HapScore=2;MGOF=16;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=26;QD=30.0;SC=GAGAAGACCCAGGGGCAGCTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=116670998;WS=116670980;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr1	116676035	rs10802159	A	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	116916236	rs7515403	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	116927717	rs79467758	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	116933115	.	C	CT	345.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-0.872;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	116940481	.	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.330;QD=0.39;ReadPosRankSum=-1.738;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr1	116943451	rs149704028	G	GTTC	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	116952787	rs1885802	C	T	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	117078771	rs34546662	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr1	117102649	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=27;MQ=59.97;NF=1;NR=3;PP=22;QD=14.1928031368;SC=GTAGTAACTACTAGGTTAGTG;SbPval=0.89;Source=Platypus;TC=16;TCF=7;TCR=9;TR=4;WE=117102657;WS=117102639;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	117121865	rs12066192	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	117122130	rs6703791	T	C	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,134:0.47:286
chr1	117142531	rs631461	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=34.34;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	117142531	.	GG	AA,AG	226	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=58.57;NF=13,24;NR=1,9;PP=221,226;QD=19.6048482044;SC=CAGGCAGCATGGGCACATAGC;SbPval=0.98;Source=Platypus;TC=36;TCF=27;TCR=9;TR=14,33;WE=117142540;WS=117142521;set=Platypus	GT:AF:DP	0/1:0.39:36
chr1	117142532	rs6428665	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=16.293;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.284;SOR=3.069;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	117208959	rs180850177	T	C	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:79,91:0.54:170
chr1	117236766	rs17036171	T	C	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:131,99:0.43:230
chr1	117248666	rs56306333	A	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,64:0.52:123
chr1	117248691	rs60604559	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr1	117249108	rs41503345	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr1	117311147	rs699738	C	A	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:281,273:0.49:554
chr1	117487710	rs10159095	AT	GA	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	117504193	rs6658749	C	T	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.062;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:78,75:0.49:153
chr1	117509981	rs12410651	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=14.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.414;SOR=3.583;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr1	117509987	rs12403233	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.283;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr1	117517132	rs114958966	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	117527645	rs36119404	GTCT	G	2916.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	117555898	rs2764849	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	117559726	rs2249265	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	117560165	rs76658575	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	117561030	rs116063197	G	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:119,137:0.54:256
chr1	117561116	rs34882009	T	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr1	117602960	rs2244501	C	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=2.702;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr1	117603188	rs2244406	G	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	117605130	.	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.737;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr1	117618722	rs1289672	T	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	117628869	rs3831091	ATG	A	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	117631391	rs1555792	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr1	117644038	rs140571064	A	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.086;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:60,42:0.41:102
chr1	117656088	rs1289658	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr1	117660608	rs1289655	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	117661312	rs36008981	A	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,136:0.51:267
chr1	117663913	rs3795655	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	117690184	rs114238538	G	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	117696037	rs2051047	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	117696083	.	ATT	A	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=12.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=2.109;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	117715200	rs146860222	ATTT	A	722.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	117715262	rs372580718	TC	T	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	117715987	.	A	AACACAC	517.73	.	AC=1;AF=0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=28.76;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	117944732	rs1289941	C	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	117957288	rs1289948	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	118065841	rs1290558	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr1	118165691	rs1630312	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr1	118320644	rs1780028	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.085;QD=8.09;ReadPosRankSum=0.497;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	118320859	rs1775749	T	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.24;QD=26.08;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	118321119	rs114485606	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	118429438	rs3054231	G	GACA	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	118461271	rs12070959	A	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:129,117:0.48:246
chr1	118484265	rs10733098	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	118492527	rs2295629	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr1	118526592	rs4347199	G	A	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	118550569	rs73014084	G	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr1	118565953	rs10923472	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr1	118566018	.	C	G	1106.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr1	118583408	rs10923477	G	A	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-1.302;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:57,65:0.53:122
chr1	118617274	rs1935993	C	T	8929.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=3.123;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=1.040;SOR=0.315;set=HC	GT:AD:AF:DP	1/1:1,350:1.00:351
chr1	118623681	rs56768861	TACACAC	T,TAC	1685.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:45
chr1	118644430	rs10754367	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	118693289	rs7550033	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	119428176	rs1779423	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	119466114	.	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-1.472;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:43,49:0.53:92
chr1	119466275	rs4659129	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	119683063	rs3934789	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr1	119683390	rs12096448	G	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	119923241	rs80302654	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.175;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	119923263	rs72989690	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.082;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr1	119923268	rs374068950	G	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.748;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chr1	119923409	.	G	C	1116.77	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:75,58:0.44:133
chr1	119923432	rs72989691	T	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr1	119923531	rs2224995	A	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	119923724	rs2275607	T	G	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.316;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:89,95:0.52:184
chr1	119923747	rs113913580	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:113,95:0.46:208
chr1	119923751	rs34638261	G	A	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:101,119:0.54:220
chr1	119927680	rs6667679	A	G	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	119929250	rs113027877	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr1	119935507	rs10802092	A	T	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	119936263	rs3765949	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr1	119936531	rs72991427	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr1	120054208	rs6200	C	T	3504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-7.788;QD=15.04;ReadPosRankSum=-0.468;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:138,95:0.41:233
chr1	120054215	rs6201	A	G	3843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-7.721;QD=15.07;ReadPosRankSum=-2.780;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:144,111:0.44:255
chr1	120054250	rs6202	T	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:178,144:0.45:322
chr1	120057002	rs6205	T	C	3855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.067;QD=10.74;ReadPosRankSum=-0.171;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:171,188:0.52:359
chr1	120057085	rs33937873	G	A	6473.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:297,326:0.52:623
chr1	120057158	rs6203	C	T	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:169,162:0.49:331
chr1	120057246	rs1047303	C	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	120165826	rs12076924	C	T	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr1	120166681	rs12067843	G	A	9932.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	120266026	rs115747918	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr1	120267597	rs3838425	GC	G	1453.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr1	120278131	rs115960082	A	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	120284279	rs150100747	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr1	120285546	rs543703	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr1	120293367	rs667246	T	C	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,96:0.47:206
chr1	120336785	rs1052972	C	T	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	120336890	rs7540526	C	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	120341126	rs34996202	T	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr1	120378615	rs10158202	C	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr1	120378678	rs3009182	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,47:0.37:128
chr1	120378702	rs10158823	A	G	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.043;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:53,85:0.62:138
chr1	120380008	rs3009184	T	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	120381686	rs5777416	G	GT,GTGTGAGTCA	894.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:20
chr1	120381687	.	G	C	407	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=2;MGOF=44;MMLQ=27;MQ=60.0;NF=14;NR=3;PP=407;QD=25.9865419145;SC=TGATTATATGGAGCACCTAGC;SbPval=0.48;Source=Platypus;TC=20;TCF=17;TCR=3;TR=17;WE=120381695;WS=120381682;set=Platypus	GT:AD:AF:DP	1/1:3,17:0.85:20
chr1	120381687	rs34302627	G	GTGAGTCAC	894.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	120384205	rs2994820	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.727;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	120386922	rs12068863	A	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr1	120437718	rs2793823	G	A	5773.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:254,280:0.52:534
chr1	120464165	rs835573	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	120466754	rs17024521	G	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	120477998	rs2453056	C	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	120478352	rs17024536	T	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	120484421	rs2493420	G	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=2.148;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,31:0.38:82
chr1	120491301	rs17024559	G	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr1	120512104	rs2493409	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr1	120611496	rs138685616	C	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:82,24:0.23:106
chr1	120611554	rs75248693	T	C	8461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.374;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=-8.168;QD=21.81;ReadPosRankSum=-1.200;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:131,257:0.66:388
chr1	120611555	rs77254078	T	G	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-5.118;QD=6.97;ReadPosRankSum=-2.480;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:239,160:0.40:399
chr1	120611715	rs2794167	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-3.647;QD=0.99;ReadPosRankSum=-1.579;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:109,21:0.16:130
chr1	120611960	rs139076095	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=-6.016;QD=7.11;ReadPosRankSum=2.435;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr1	120612002	rs372504208	CGG	C	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-7.578;QD=12.84;ReadPosRankSum=2.051;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:62,35:0.36:97
chr1	120612006	rs4021006	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=5.095;QD=5.86;ReadPosRankSum=-1.299;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:64,34:0.35:98
chr1	120612034	rs201668322	T	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=-6.225;QD=3.04;ReadPosRankSum=0.793;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr1	120612037	.	TCCTCCGCCG	T	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-3.193;QD=0.51;ReadPosRankSum=-0.884;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:131,12:0.08:143
chr1	120612040	.	T	TCCGCCGCCGCCGCCGCCGCCGCCGCCG	377.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=11.851;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-5.358;QD=3.12;ReadPosRankSum=3.456;SOR=2.044;set=HC	GT:AD:AF:DP	0/1:105,16:0.13:121
chr1	120612154	rs56375229	C	G	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-3.441;QD=13.80;ReadPosRankSum=0.032;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:57,35:0.38:92
chr1	120612163	rs55899574	C	A	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-3.738;QD=14.14;ReadPosRankSum=-0.447;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr1	120612194	rs79247096	C	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-0.164;QD=3.54;ReadPosRankSum=1.522;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr1	120612223	rs372622310	AGCC	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-0.325;QD=9.07;ReadPosRankSum=-2.435;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	120612265	rs375584849	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-2.148;QD=9.18;ReadPosRankSum=-1.778;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	121115761	rs150166046	T	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr1	121115786	rs199825051	C	A	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-4.656;QD=10.60;ReadPosRankSum=1.728;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:68,74:0.52:142
chr1	121116647	rs2772072	T	A	1240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=7.977;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-5.166;QD=10.79;ReadPosRankSum=-1.834;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:45,70:0.61:115
chr1	121116678	rs61806689	C	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=6.955;MLEAC=1;MLEAF=0.500;MQ=52.46;MQRankSum=-0.200;QD=3.75;ReadPosRankSum=0.580;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:199,36:0.15:235
chr1	121116688	rs61806690	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=52.45;MQRankSum=-0.982;QD=3.81;ReadPosRankSum=-0.406;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:213,42:0.16:255
chr1	121116733	rs61806691	A	G	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:163,149:0.48:312
chr1	121116933	rs79097880	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr1	121116953	rs78187610	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	121124501	rs201210511	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.46;MQRankSum=0.491;QD=1.32;ReadPosRankSum=0.654;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	144013853	rs6600697	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-1.159;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:373,56:0.13:429
chr1	144013865	rs6600696	T	G	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.205;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:402,132:0.25:534
chr1	144014051	rs1884147	G	A	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.884;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:378,114:0.23:492
chr1	144014068	rs1884146	T	C	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:203,175:0.46:378
chr1	144052633	.	CTT	C	380	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=3;MGOF=18;MMLQ=27;MQ=53.31;NF=34;NR=8;PP=380;QD=10.2447687437;SC=CAGAGTGAGACTTTGTCTCAA;SbPval=0.31;Source=Platypus;TC=66;TCF=56;TCR=10;TR=42;WE=144052655;WS=144052623;set=Platypus	GT:AD:AF:DP	1/0:24,42:0.64:66
chr1	144052641	.	C	CAA	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=8.512;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.843;QD=7.48;ReadPosRankSum=0.572;SOR=2.910;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	144053709	rs191996853	A	G	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:35,152:0.81:187
chr1	144676632	rs75239917	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.42;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.792;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	144676646	rs75500033	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.97;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	144854491	rs2798856	T	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=2.722;QD=6.39;ReadPosRankSum=-0.106;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:195,50:0.20:245
chr1	144854497	rs2653676	A	G	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=2.850;QD=5.84;ReadPosRankSum=-0.582;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:213,58:0.21:271
chr1	144854528	rs78461771	A	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-19.013;QD=1.34;ReadPosRankSum=0.275;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:358,41:0.10:399
chr1	144854537	rs3851872	T	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-18.444;QD=1.23;ReadPosRankSum=-0.496;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:383,45:0.11:428
chr1	144854581	rs78371650	T	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-13.846;QD=1.84;ReadPosRankSum=1.925;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:330,45:0.12:375
chr1	144854594	rs79028512	G	T	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-13.621;QD=2.65;ReadPosRankSum=3.300;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:284,43:0.13:327
chr1	144854597	rs3851873	T	C	4590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.362;QD=14.95;ReadPosRankSum=2.248;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:184,123:0.40:307
chr1	144854598	rs3863691	C	T	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=3.116;QD=8.75;ReadPosRankSum=-0.280;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:226,81:0.26:307
chr1	144859720	rs678786	G	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	144859889	rs111880480	G	T	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:148,151:0.51:299
chr1	144860026	rs1699819	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:124,45:0.27:169
chr1	144865850	rs1613780	G	T	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.052;QD=4.04;ReadPosRankSum=1.111;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:352,134:0.28:486
chr1	144866509	rs924667	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:132,52:0.28:184
chr1	144866643	rs1620560	G	A	8622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.279;QD=8.84;ReadPosRankSum=1.025;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:704,271:0.28:975
chr1	144866662	rs1064044	T	C	8352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=921;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.293;QD=9.17;ReadPosRankSum=1.345;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:660,251:0.28:911
chr1	144868170	rs1628310	C	T	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.366;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:162,56:0.26:218
chr1	144868204	rs1747951	A	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.907;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.523;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr1	144871738	rs1698605	C	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.255;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	144871755	rs1778159	A	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr1	144871782	rs1778158	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr1	144871889	rs1698606	A	C	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-1.396;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:85,47:0.36:132
chr1	144873818	rs1610566	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr1	144873840	rs1627335	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,43:0.32:133
chr1	144873887	rs1699787	C	T	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:254,117:0.32:371
chr1	144873962	rs11341221	CT	C	5822.73	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:563,206:0.27:769
chr1	144874038	rs1419160	T	C	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.963;QD=3.91;ReadPosRankSum=1.997;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:258,94:0.27:352
chr1	144874070	rs1610565	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:102,45:0.31:147
chr1	144874088	rs1419158	G	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr1	144874641	rs1610771	G	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr1	144874760	rs1610774	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:331,124:0.27:455
chr1	144874950	rs1747957	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr1	144877176	rs2762875	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,20:0.25:81
chr1	144877366	rs1807092	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr1	144877390	rs1807093	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.711;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	144879264	rs2798901	A	G	4729.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:177,236:0.57:413
chr1	144879375	rs1747958	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:139,49:0.26:188
chr1	144881711	rs937714	T	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.818;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr1	144882581	rs1699836	A	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr1	144882823	rs1698647	C	T	7020.77	.	AC=1;AF=0.500;AN=2;DB;DP=1258;set=Intersection	GT:AD:AF:DP	0/1:827,419:0.34:1246
chr1	144882912	rs1698646	G	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:175,89:0.34:264
chr1	144886063	rs1625285	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr1	144886092	rs1343472	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:118,72:0.38:190
chr1	144886197	rs1698624	A	T	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:197,90:0.31:287
chr1	144886409	rs1620507	A	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.047;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	144890833	rs11447	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=14.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-2.062;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	144892089	rs1614098	G	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr1	144892149	rs1698709	G	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.540;QD=4.15;ReadPosRankSum=-1.171;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:142,57:0.29:199
chr1	144910082	rs638780	A	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	144912153	rs1628172	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	144912233	rs1629011	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.699;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:75,23:0.23:98
chr1	144915561	rs1778111	G	A	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-2.468;QD=3.68;ReadPosRankSum=-1.187;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:220,78:0.26:298
chr1	144915624	rs1778112	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:74,23:0.24:97
chr1	144916676	rs1698683	C	T	2569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=2.100;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:474,178:0.27:652
chr1	144916748	rs1747930	C	G	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.738;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:327,95:0.23:422
chr1	144917546	rs1698682	A	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:134,64:0.32:198
chr1	144917827	rs11295415	CA	C	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	144917841	rs1698681	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	144918034	rs2655804	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.922;QD=3.77;ReadPosRankSum=-0.016;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr1	144918957	rs1061308	T	A	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.822;QD=3.54;ReadPosRankSum=-0.743;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:373,134:0.26:507
chr1	144919008	rs11296953	AC	A	2346.73	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:281,99:0.26:380
chr1	144919094	rs1698680	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr1	144922109	rs1343469	A	G	5156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.194;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:779,322:0.29:1101
chr1	144922171	rs1343470	C	T	5312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=1380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.517;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:993,369:0.27:1362
chr1	144922523	rs2455994	C	T	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.180;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:594,175:0.23:769
chr1	144922583	rs1359300	G	A	2686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.725;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:637,200:0.24:837
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	11186.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	144930571	rs2762866	C	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,42:0.32:132
chr1	144930596	rs2762867	C	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:113,62:0.35:175
chr1	144930940	rs2147326	T	C	2678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.326;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:379,165:0.30:544
chr1	144931330	rs2762745	C	T	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=1116;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=1.562;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:823,275:0.25:1098
chr1	144931392	rs2798893	G	A	2987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.597;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:563,204:0.27:767
chr1	144931727	rs2985363	G	A	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.415;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:167,78:0.32:245
chr1	144946510	rs2488977	C	T	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:15,100:0.87:115
chr1	144946768	rs2762733	G	A	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.302;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:144,59:0.29:203
chr1	144946876	rs2798887	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.556;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr1	144951959	rs142985095	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=1.254;QD=4.48;ReadPosRankSum=-1.782;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:256,105:0.29:361
chr1	144951973	rs77471170	T	C	5424.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:206,264:0.56:470
chr1	144952078	rs71220421	C	A	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-0.117;QD=0.99;ReadPosRankSum=-1.158;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:691,125:0.15:816
chr1	144952207	rs3121544	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-11.104;QD=0.44;ReadPosRankSum=0.099;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:357,52:0.13:409
chr1	144952220	rs139438772	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=-10.121;QD=0.51;ReadPosRankSum=-2.368;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:300,45:0.13:345
chr1	144994658	rs1664022	C	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.631;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:728,122:0.14:850
chr1	144994694	rs3010980	T	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=1105;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.273;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:926,162:0.15:1088
chr1	144994861	rs2442640	C	T	17370.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:74,723:0.91:797
chr1	145014103	rs1778711	G	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.467;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:119,22:0.16:141
chr1	145014186	rs66593379	G	GA	1497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=7.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.142;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:158,126:0.44:284
chr1	145014263	rs1778708	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=1128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.515;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:954,162:0.15:1116
chr1	145014299	rs12096826	G	T	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=1154;set=Intersection	GT:AD:AF:DP	0/1:780,368:0.32:1148
chr1	145014394	rs1107089	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.599;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:259,50:0.16:309
chr1	145014411	rs1778707	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=2.357;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:161,25:0.13:186
chr1	145014436	rs3856006	G	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.028;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr1	145016020	rs657162	T	G	7658.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:286,361:0.56:647
chr1	145016032	rs112952246	C	CA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.410;QD=0.34;ReadPosRankSum=-0.114;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:347,61:0.15:408
chr1	145017784	rs11300211	CT	C	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-1.450;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	145017831	.	T	TCCCTCCCCTCCCCTCCCTTCCCCCTCCCTCCCTCCCTC	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.742;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:43,1:0.02:44
chr1	145017851	.	T	TCCTC	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.150;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:124,17:0.12:141
chr1	145018023	rs2799192	G	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-1.481;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:116,19:0.14:135
chr1	145021024	rs1778692	G	C	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.525;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:196,52:0.21:248
chr1	145021089	rs1613515	G	A	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.079;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:666,142:0.18:808
chr1	145021150	rs11538401	T	C	5377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=1139;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.559;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:786,343:0.30:1129
chr1	145021183	rs56185836	C	A	4679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=1008;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.149;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:701,299:0.30:1000
chr1	145038736	rs1663882	C	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=6.082;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.997;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:315,71:0.18:386
chr1	145038815	rs2442664	A	G	6479.77	.	AC=1;AF=0.500;AN=2;DB;DP=1256;set=Intersection	GT:AD:AF:DP	0/1:840,405:0.33:1245
chr1	145038889	rs10797615	G	A	2196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=1341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.986;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:1089,240:0.18:1329
chr1	145038952	rs1663881	C	T	3930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.857;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:719,148:0.17:867
chr1	145038954	rs10797616	G	T	3930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.817;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:703,144:0.17:847
chr1	145039026	rs1663880	T	C	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.387;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:259,60:0.19:319
chr1	145039562	rs1663878	C	T	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=925;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.898;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:744,162:0.18:906
chr1	145074919	rs2289798	A	G	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:196,144:0.42:340
chr1	145074939	rs1663854	T	C	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.449;QD=1.41;ReadPosRankSum=-1.510;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:367,76:0.17:443
chr1	145075208	rs6424335	T	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:104,62:0.37:166
chr1	145075519	rs2596337	G	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.879;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr1	145075683	rs2762779	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.447;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:405,80:0.16:485
chr1	145075854	rs1663853	G	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.481;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:690,119:0.15:809
chr1	145075923	rs6656135	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:396,198:0.33:594
chr1	145103844	rs2590144	G	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=3.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-1.344;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:320,63:0.16:383
chr1	145103947	rs2794062	T	C	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.694;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:852,169:0.17:1021
chr1	145104075	rs4145928	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr1	145109456	rs7553975	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-1.778;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:347,133:0.28:480
chr1	145109468	rs2442652	A	G	17420.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:27,579:0.96:606
chr1	145109583	rs2794053	C	A	12697.77	.	AC=1;AF=0.500;AN=2;DB;DP=2149;set=Intersection	GT:AD:AF:DP	0/1:1402,727:0.34:2129
chr1	145109661	rs2655551	G	A	7134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=2392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.663;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:1819,549:0.23:2368
chr1	145112284	.	CCG	C	2949.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.573;QD=10.61;ReadPosRankSum=-1.547;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:192,86:0.31:278
chr1	145112287	rs2794042	T	C	1826.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=5.182;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.418;QD=6.55;ReadPosRankSum=0.783;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:179,100:0.36:279
chr1	145112288	.	G	GCA	2949.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.593;QD=10.42;ReadPosRankSum=-1.475;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:197,86:0.30:283
chr1	145112300	.	C	T	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.909;QD=2.97;ReadPosRankSum=0.793;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:251,74:0.23:325
chr1	145112313	rs2596302	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.591;QD=0.45;ReadPosRankSum=0.114;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:359,52:0.13:411
chr1	145112414	rs2590131	T	C	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.048;ClippingRankSum=0.000;DB;DP=1797;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.095;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:1589,196:0.11:1785
chr1	145112420	rs2794041	C	T	7351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=1844;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.267;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:1326,507:0.28:1833
chr1	145112428	rs2794040	C	T	3203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=1936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.477;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:1711,214:0.11:1925
chr1	145112501	rs3871984	C	T	4461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=1473;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-2.026;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:1123,344:0.23:1467
chr1	145115658	.	TATTTTTAA	T	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.679;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:304,37:0.11:341
chr1	145115810	rs2655557	A	G	44325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=2101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=0.420;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:822,1266:0.61:2088
chr1	145115815	rs202212505	A	C	4635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=2050;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.349;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:1611,425:0.21:2036
chr1	145115820	rs2655558	T	C	7807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=1996;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.115;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:1440,543:0.27:1983
chr1	145139088	rs150935736	C	CG	1306.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,45:0.37:121
chr1	145209152	rs144013425	GGGC	G	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.427;MLEAC=1;MLEAF=0.500;MQ=52.02;MQRankSum=-4.266;QD=4.79;ReadPosRankSum=2.092;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	5828.73	.	AC=2;AF=1.00;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	145209819	rs860659	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:435,83:0.16:518
chr1	145209869	rs80228373	A	C	2688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=4.564;MLEAC=1;MLEAF=0.500;MQ=48.20;MQRankSum=-9.462;QD=5.44;ReadPosRankSum=1.061;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:347,147:0.30:494
chr1	145209869	.	AA	CG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=43.45;NF=88;NR=62;PP=2944;QD=20;SC=TGAGCGAAGGAATGCCAGATT;SbPval=0.61;Source=Platypus;TC=422;TCF=242;TCR=180;TR=150;WE=145209878;WS=145209859;set=Platypus	GT:AD:AF:DP	0/1:272,150:0.36:422
chr1	145209870	rs76440671	A	G	7395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=10.825;MLEAC=1;MLEAF=0.500;MQ=48.20;MQRankSum=-14.379;QD=14.97;ReadPosRankSum=2.234;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:271,223:0.45:494
chr1	145273366	rs140871032	C	T	10997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=2794;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=0.841;QD=3.95;ReadPosRankSum=0.304;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:2032,749:0.27:2781
chr1	145273431	rs17421312	A	G	8105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=2350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=1.723;QD=3.46;ReadPosRankSum=-1.164;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:1765,577:0.25:2342
chr1	145273520	rs2793994	G	A	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:277,191:0.41:468
chr1	145281247	rs74721027	T	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr1	145281543	rs8002	C	T	10621.77	.	AC=1;AF=0.500;AN=2;DB;DP=1764;set=Intersection	GT:AD:AF:DP	0/1:1174,586:0.33:1760
chr1	145282093	rs199946317	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:210,102:0.33:312
chr1	145456731	rs6694055	G	C	4123.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.703;QD=9.63;ReadPosRankSum=1.081;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:148,280:0.65:428
chr1	145456732	rs375314716	GA	G	431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=4.458;QD=0.95;ReadPosRankSum=1.090;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:350,105:0.23:455
chr1	145457677	rs147183625	A	AG	2001	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:8,75:0.90:83
chr1	145458154	.	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-2.034;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	145459902	rs6658276	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr1	145460000	rs6672807	A	G	786.03	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr1	145508146	rs59285351	C	A	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:60,208:0.78:268
chr1	145509217	rs12079762	C	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr1	145517191	rs2274612	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr1	145517252	rs61731751	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:20,109:0.84:129
chr1	145522423	rs150764704	T	TTG	343.52	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr1	145527604	rs2274620	A	G	15954.77	.	AC=1;AF=0.500;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	0/1:158,734:0.82:892
chr1	145531980	rs4384171	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	145532010	.	CTGTG	C	1503.73	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:14,52:0.79:66
chr1	145532052	.	ATG	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=9.951;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.381;QD=0.48;ReadPosRankSum=2.630;SOR=1.989;set=HC	GT:AD:AF:DP	0/1:143,18:0.11:161
chr1	145532549	rs1328584	T	C	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	145535921	rs2274617	T	C	16058.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:186,716:0.79:902
chr1	145538664	rs1109216	A	G	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:19,118:0.86:137
chr1	145555653	rs6424379	C	T	19476.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:1,746:1.00:747
chr1	145555757	rs6699065	C	T	20183.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr1	145555811	rs6658371	T	A	11286.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	145558565	rs11801520	C	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	145558824	rs17352281	A	C	12040.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:2,459:1.00:461
chr1	145559010	rs374630197	CGT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=6.039;QD=0.24;ReadPosRankSum=-0.587;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:430,52:0.11:482
chr1	145559918	.	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.518;QD=1.95;ReadPosRankSum=-0.708;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr1	145561594	rs6670984	C	T	31260.77	.	AC=2;AF=1.00;AN=2;DB;DP=1220;set=Intersection	GT:AD:AF:DP	1/1:0,1206:1.00:1206
chr1	145562862	rs113200471	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.893;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr1	145562881	rs10910824	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	145562990	rs141237130	G	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.087;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr1	145563071	rs113734679	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:108,34:0.24:142
chr1	145566535	rs1819347	C	T	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:23,117:0.84:140
chr1	145567084	rs16827032	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.401;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:167,46:0.22:213
chr1	145578791	rs74119696	T	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.740;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:238,43:0.15:281
chr1	145578974	rs112106951	T	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.508;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:215,59:0.22:274
chr1	145581342	rs113451928	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.378;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr1	145585317	rs4128488	A	G	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:66,244:0.79:310
chr1	145586940	rs112245472	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr1	145588536	rs9286836	C	T	18600.77	.	AC=1;AF=0.500;AN=2;DB;DP=1062;set=Intersection	GT:AD:AF:DP	0/1:217,832:0.79:1049
chr1	145597014	rs113683759	G	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.697;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:428,95:0.18:523
chr1	145597116	rs9728311	C	T	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	145598459	rs9729715	T	C	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	145601861	rs9286837	G	A	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	145601947	rs149804864	G	GT	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr1	145606226	rs113300485	T	C	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.197;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr1	145608298	rs12059384	A	G	9790.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:129,438:0.77:567
chr1	145646380	rs77018841	A	G	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-0.314;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr1	145663499	rs75357921	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	145826649	.	G	A	366.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.68;MQRankSum=-1.165;QD=20.39;ReadPosRankSum=-0.507;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	145826770	rs34955113	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	145826820	rs182974558	G	A	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:45,195:0.81:240
chr1	146514442	rs3753431	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=14.070;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-2.952;QD=0.59;ReadPosRankSum=0.021;SOR=3.290;set=HC	GT:AD:AF:DP	0/1:110,15:0.12:125
chr1	146514576	rs34026136	T	C	11861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-0.449;QD=17.44;ReadPosRankSum=-0.366;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:136,544:0.80:680
chr1	146633933	rs1036852	G	A	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	146643555	rs1348316	A	G	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	146656292	rs4950385	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	146672906	rs894469	C	T	14863.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr1	146673140	rs28381212	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.938;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr1	146673178	rs6683215	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	146680262	rs2354433	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr1	146685121	rs1530336	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	146687250	rs1822312	A	T	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	146714255	rs1890040	A	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	146714392	rs1890042	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.504;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr1	146723738	rs59689147	A	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	146724093	rs1890037	A	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	146728162	rs61409326	T	TA	4200.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	146739277	rs4143738	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.485;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=5.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.669;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:262,47:0.15:309
chr1	146740576	rs11576360	G	A	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.480;QD=1.87;ReadPosRankSum=-1.740;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:386,91:0.19:477
chr1	146746846	.	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=1.402;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	146746848	.	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=1.747;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	146746871	rs74121879	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,46:0.84:55
chr1	146747153	rs6680778	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-2.071;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:278,51:0.16:329
chr1	146747194	rs74121880	G	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:12,116:0.91:128
chr1	146748072	rs7534963	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	146751782	rs7547279	A	C	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	146763089	rs10900333	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	146763415	rs3737854	T	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	146765454	rs2297752	C	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,89:0.67:133
chr1	146766069	rs71083827	C	CAT	7431.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=1.367;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	146767062	rs7516430	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr1	146767149	rs4950394	G	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	146767320	rs6537	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	147085066	rs35669952	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr1	147086504	rs7512513	A	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=6.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.225;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:103,22:0.18:125
chr1	147096794	rs867270	A	G	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	147096828	rs946902	C	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	147119273	rs1344	G	A	8007.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:107,368:0.77:475
chr1	147121977	rs6593795	C	T	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	147124310	rs2153463	T	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	147124362	rs145824520	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.540;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:129,20:0.13:149
chr1	147126475	rs150452101	T	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:31,147:0.83:178
chr1	147131465	rs6674938	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	147131501	rs34675044	A	T	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:39,161:0.81:200
chr1	147131945	rs2275552	T	C	218.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	147142296	rs2883202	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr1	147230217	rs1692141	T	C	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	147381444	rs1532399	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	147400824	.	A	C	998.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr1	147806559	rs10752439	C	T	5884.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:43,261:0.86:304
chr1	147806874	rs2999607	G	C	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-0.104;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr1	147806880	rs537191	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.26;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	149376745	rs111756820	G	A	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	149676264	rs199745503	T	C	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:227,116:0.34:343
chr1	149676401	rs146138154	A	G	3751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=7.529;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=-9.382;QD=11.58;ReadPosRankSum=-0.987;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:143,181:0.56:324
chr1	149821912	rs138035086	CGGAG	C	1483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-0.961;QD=6.74;ReadPosRankSum=1.405;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:168,52:0.24:220
chr1	149880863	rs68002561	A	G	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.298;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:496,133:0.21:629
chr1	149881173	rs55909843	A	C	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-1.092;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:182,52:0.22:234
chr1	149881183	rs56351279	C	T	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-1.671;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:152,44:0.22:196
chr1	149898180	rs12082922	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.508;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr1	149900985	rs71664710	CA	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.908;QD=1.03;ReadPosRankSum=2.501;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:169,64:0.27:233
chr1	149907124	rs373169633	GAGGA	G	718.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:84,24:0.22:108
chr1	149907172	rs149725131	CA	C	1109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.183;QD=4.19;ReadPosRankSum=2.306;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:221,44:0.17:265
chr1	149907183	rs55966070	C	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.131;QD=3.95;ReadPosRankSum=1.283;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:253,52:0.17:305
chr1	149908016	rs201450510	A	AAG	1288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.466;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:291,54:0.16:345
chr1	149939137	rs10494259	G	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.646;SOR=2.194;set=HC	GT:AD:AF:DP	0/1:44,7:0.14:51
chr1	150044139	rs16833591	C	T	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	150049429	rs10494263	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.664;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr1	150054772	rs76484969	C	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.639;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:580,124:0.18:704
chr1	150122493	rs4553237	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.887;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:112,23:0.17:135
chr1	150129267	rs10749675	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.137;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr1	150193165	rs58395667	G	A	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.08;ReadPosRankSum=-1.554;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:22,99:0.82:121
chr1	150199123	rs7522034	G	T	13253.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	150201631	.	CT	C	74.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.23;ReadPosRankSum=-1.173;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	150203082	rs201009025	C	CT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.958;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	150230422	.	G	GCT	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=1.786;QD=16.90;ReadPosRankSum=1.163;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr1	150235325	rs200573842	TA	T	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.690;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr1	150236313	rs370620757	TC	T	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.797;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr1	150249101	rs11205354	C	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	150253373	rs146356840	C	T	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:69,212:0.75:281
chr1	150255587	rs2147324	T	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	150255658	rs6689338	T	A	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:37,148:0.80:185
chr1	150256101	rs113957787	G	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,31:0.27:115
chr1	150256413	.	T	TTTATTGTTATTATTATTATTA	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=-0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.00;MQRankSum=1.020;QD=17.34;ReadPosRankSum=2.352;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr1	150258838	rs1122967	C	G	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	150259400	rs9126	A	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.401;QD=0.95;ReadPosRankSum=-0.395;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:261,44:0.14:305
chr1	150276461	rs471657	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.615;QD=0.45;ReadPosRankSum=0.964;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr1	150277387	rs11205359	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	150280550	rs4845	G	A	7972.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:68,359:0.84:427
chr1	150281202	rs580060	A	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	150281343	rs71622690	C	T	8536.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:121,397:0.77:518
chr1	150300727	rs834225	T	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:26,87:0.77:113
chr1	150307270	rs1260408	T	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	150310827	rs11806171	A	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:17,92:0.84:109
chr1	150315953	rs113149079	G	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.204;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:151,31:0.17:182
chr1	150319081	rs16836143	T	A	342.31	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	150389964	.	GA	G	1137.73	.	AC=2;AF=1.00;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr1	150415631	rs3862206	T	G	1152.96	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:6,52:0.90:58
chr1	150416621	rs74124686	G	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr1	150416913	rs16836940	A	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	150432870	.	GGTT	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.599;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	150437215	rs66513313	A	G	3681.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:61,169:0.73:230
chr1	150459715	rs34001546	T	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr1	150468842	rs1343965	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	150470296	rs11588874	G	A	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:30,108:0.78:138
chr1	150471156	rs34542152	C	T	10496.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:130,474:0.78:604
chr1	150471848	rs34802685	A	AT	389.90	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	150477085	rs35866586	A	AC	6631.73	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:131,283:0.68:414
chr1	150480571	rs12724450	G	A	8857.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:64,396:0.86:460
chr1	150480582	.	C	CA	946.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DP=509;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.334;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:440,68:0.13:508
chr1	150483236	rs9661040	A	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr1	150483840	rs4970979	C	T	1110.90	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:6,45:0.88:51
chr1	150484004	rs11801190	G	A	8770.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:89,393:0.82:482
chr1	150484395	rs149815479	ACC	A	2369.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	150484987	rs13294	G	A	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.642;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:649,153:0.19:802
chr1	150485053	rs146177795	G	GTC	2985.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=1.257;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:417,102:0.20:519
chr1	150485566	rs12031973	T	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=51.65;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	150485571	rs12031974	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=39.19;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	150485724	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.09;ReadPosRankSum=-0.279;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:452,63:0.12:515
chr1	150524277	rs61684558	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	150526044	rs41317515	G	C	2660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=1379;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.412;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1090,257:0.19:1347
chr1	150526406	rs6681639	C	T	8774.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:105,379:0.78:484
chr1	150527109	rs12095798	T	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.078;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:332,95:0.22:427
chr1	150528090	rs146160043	G	GACAC	10305.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	150528118	rs149100901	T	TACAC	7384.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	150528175	rs35233292	GCA	G	1921.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr1	150528208	rs9728540	C	T	1541.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=37.60;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	150528209	rs369710144	GCA	G	904.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	150529322	rs34379037	T	TAA	4976.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	150529904	rs183926645	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.714;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:155,28:0.15:183
chr1	150531008	rs10888382	T	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.169;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:517,111:0.18:628
chr1	150531050	rs10749657	G	A	21046.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:0,797:1.00:797
chr1	150531170	rs10749658	C	T	26437.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	1/1:1,922:1.00:923
chr1	150531171	.	GC	G	2330.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=937;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.150;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:755,142:0.16:897
chr1	150531360	rs12097596	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr1	150531380	rs11204664	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.036;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	150532262	rs139784416	C	T	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.547;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:461,100:0.18:561
chr1	150549800	rs148777636	T	TTGGTGG	10586.73	.	AC=1;AF=0.500;AN=2;DB;DP=531;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:34,454:0.93:488
chr1	150550019	rs11428742	T	TA	8424.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:4,233:0.98:237
chr1	150600181	rs2280078	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	150601445	.	C	G	9236.77	.	AC=1;AF=0.500;AN=2;DP=544;set=Intersection	GT:AD:AF:DP	0/1:124,409:0.77:533
chr1	150667341	.	G	GA	2389.73	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:39,132:0.77:171
chr1	150675935	rs60914460	A	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	150676674	.	T	TA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.360;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr1	150684117	rs57127659	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	150705412	rs186997930	T	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.348;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr1	150730529	.	A	AT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.511;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr1	150771703	rs10788796	T	C	19497.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr1	150779755	rs6587522	C	T	9854.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	150784492	rs151211833	T	C	6094.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:58,273:0.82:331
chr1	150789961	rs3894771	A	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.79;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	150804401	rs200891935	G	GA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.430;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:127,38:0.23:165
chr1	150833805	rs139885151	C	CA	1306.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:7,69:0.91:76
chr1	150849071	.	A	AC	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.464;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr1	150938616	rs267739	G	A	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	150944169	rs11579289	G	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	150944541	rs267737	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	150956373	rs138842987	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.698;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr1	150958977	rs2305814	T	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-2.826;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:130,29:0.18:159
chr1	150960350	rs7532008	A	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-2.344;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:182,60:0.25:242
chr1	150969992	rs2925740	T	C	13906.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr1	150970577	rs2925741	G	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	150972538	rs708909	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	150974162	rs771204	G	A	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:54,165:0.75:219
chr1	150978741	rs56341880	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	150990466	rs71090118	C	CAT	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.655;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:145,23:0.14:168
chr1	150990825	rs3738480	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	150991285	rs6664220	A	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	150997155	rs56805474	G	A	15103.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:150,680:0.82:830
chr1	150997940	rs3738478	T	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.309;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr1	150998221	rs55774303	AT	A	701.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.594;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:11,52:0.83:63
chr1	151001583	rs6691701	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	151006539	rs3738476	C	A	11703.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:150,532:0.78:682
chr1	151009984	rs12070288	C	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.501;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	151010970	rs111795410	T	TC	3393.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:36,122:0.77:158
chr1	151017254	.	G	GT	517.73	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr1	151019180	rs6587553	A	G	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	151022754	rs74125053	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	151026815	rs2902810	C	T	13288.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr1	151027353	rs74125062	C	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr1	151028125	rs74125063	G	T	9955.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:130,464:0.78:594
chr1	151028234	rs11204767	G	T	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	151039609	rs3738481	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	151070252	rs35034487	CA	C	1632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.781;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:37,130:0.78:167
chr1	151083724	rs71090131	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.835;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr1	151089888	rs59454556	A	C	7165.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:92,331:0.78:423
chr1	151104598	rs4971005	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	151106942	rs12089976	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.892;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:141,30:0.18:171
chr1	151108137	rs4971007	T	G	20578.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr1	151109212	rs74127529	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	151109326	rs74127530	T	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr1	151111837	rs12078857	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.074;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:188,34:0.15:222
chr1	151114882	rs11464219	C	CT	5349.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	151114961	rs74127531	G	A	8154.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:83,372:0.82:455
chr1	151134579	rs11459817	T	TA	394.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.137;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	151139073	rs78216774	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.415;QD=2.66;ReadPosRankSum=-0.289;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr1	151140888	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.37;ReadPosRankSum=0.492;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr1	151146186	rs7552226	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,80:0.74:108
chr1	151146276	rs7521416	T	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr1	151149601	rs6656261	A	G	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	151212399	rs141190258	C	CCTT	4447.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:31,108:0.78:139
chr1	151219593	.	CTTAT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.442;QD=0.99;ReadPosRankSum=0.054;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr1	151227371	rs3811405	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:6,42:0.88:48
chr1	151254023	rs59912932	A	C	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:71,221:0.76:292
chr1	151254041	rs3811406	T	C	6731.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:106,302:0.74:408
chr1	151259043	rs2298265	C	T	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:80,302:0.79:382
chr1	151259543	rs3748545	G	A	25358.77	.	AC=1;AF=0.500;AN=2;DB;DP=1442;set=Intersection	GT:AD:AF:DP	0/1:278,1140:0.80:1418
chr1	151280400	rs1536617	C	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr1	151282841	rs1752388	A	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr1	151288391	rs1752379	A	G	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	151314379	rs1752387	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	151316161	rs1752386	G	A	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	151317494	rs2233847	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	151341728	rs35093538	G	GC	1070.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr1	151342104	rs112925860	A	C	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	151372047	rs2296840	C	T	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:5,188:0.97:193
chr1	151372770	rs2495390	A	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	151373200	rs2495391	T	C	8426.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	151374152	rs72135104	GCTTACA	G	14105.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	151377248	rs6667714	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	151377407	rs1571294	A	C	9077.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	151380505	.	AAAG	A	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=0.321;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	151384052	.	T	TA	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.259;QD=1.41;ReadPosRankSum=0.269;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr1	151384711	rs1887545	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr1	151384733	rs3748550	G	A	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr1	151402045	rs6587577	A	G	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	151492614	rs72997944	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.211;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:89,28:0.24:117
chr1	151496718	rs16833336	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=0.795;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:300,45:0.13:345
chr1	151497140	rs1573130	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.348;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr1	151501698	rs2096232	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	151501737	rs6678068	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.409;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:74,18:0.20:92
chr1	151518479	rs34986731	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.165;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr1	151538507	rs11405272	T	TC	241.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	151546931	rs6660238	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-1.160;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	151634512	rs3831367	A	AT	718.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr1	151666995	rs146479109	T	TA	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.686;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:237,52:0.18:289
chr1	151675618	rs1308150	T	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.028;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:282,62:0.18:344
chr1	151679441	rs1308152	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.741;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	151679900	rs10888428	C	T	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.408;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:324,90:0.22:414
chr1	151681635	rs2280475	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=2.122;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:287,67:0.19:354
chr1	151686983	rs939592	T	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.209;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:181,48:0.21:229
chr1	151700189	rs72506285	C	CCTG	2826.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	151701219	rs112196483	C	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.802;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:103,24:0.19:127
chr1	151701345	rs2298294	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.932;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:272,51:0.16:323
chr1	151732700	rs10888433	A	G	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.483;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:402,109:0.21:511
chr1	151733335	rs8480	T	G	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.035;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:494,116:0.19:610
chr1	151733379	.	CA	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=11.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.836;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:67,50:0.43:117
chr1	151734136	rs1196454	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chr1	151735545	rs1196455	A	G	11994.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:148,537:0.78:685
chr1	151735576	rs7007	T	C	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.388;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:563,147:0.21:710
chr1	151740479	rs1196457	C	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	151740666	rs2495397	T	C	13010.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr1	151742550	.	GGAGAGA	G	4627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.140;QD=31.06;ReadPosRankSum=1.397;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:37,112:0.75:149
chr1	151742553	.	GAGAGAGGGAGAGGGAGACCATGGGGAGAC	G	2972	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=21;MQ=60.35;NF=16;NR=20;PP=2972;QD=20;SC=AGACCGTGGAGAGAGAGGGAG;SbPval=0.62;Source=Platypus;TC=69;TCF=32;TCR=37;TR=36;WE=151742596;WS=151742543;set=Platypus	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	151742565	rs140076465	GGGAGACCATGGGGAGACGGAGAC	G	5461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.254;QD=24.06;ReadPosRankSum=2.048;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:74,153:0.67:227
chr1	151742588	.	C	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=24;MQ=60.26;NF=72;NR=46;PP=2962;QD=20;SC=GAGACGGAGACGGAGAGGGAG;SbPval=0.49;Source=Platypus;TC=159;TCF=98;TCR=61;TR=118;WE=151742596;WS=151742543;set=Platypus	GT:AD:AF:DP	0/1:41,118:0.74:159
chr1	151747043	rs1123855	C	T	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:72,244:0.77:316
chr1	151747733	rs1781421	C	T	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr1	151747799	rs1781419	G	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	151748425	rs3923394	C	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	151751081	rs1996729	G	A	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:17,93:0.85:110
chr1	151753805	rs11355113	AT	A	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.599;QD=7.98;ReadPosRankSum=0.776;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	151754112	rs35077383	T	C	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:35,149:0.81:184
chr1	151755284	rs6681093	C	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.018;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr1	151780177	rs3828057	C	T	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:35,153:0.81:188
chr1	151783688	rs939595	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	151789588	rs151171878	C	CTGTGTGTGTG	1233.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr1	151789607	rs112312658	TGC	T	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.250;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:45,6:0.12:51
chr1	151789609	rs56273334	C	T	1474.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.77;ReadPosRankSum=0.163;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,37:0.82:45
chr1	151789611	rs55841824	C	T	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.523;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr1	151803963	rs111510377	C	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.969;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr1	151811226	rs6673556	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=5.84;ReadPosRankSum=2.871;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	151820298	rs6587624	G	C	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	151820324	rs6587625	T	C	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	151825991	rs7556386	G	T	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr1	151862661	rs1060870	G	A	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	151867560	rs3762427	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	151881885	rs3748805	A	C	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	152005327	rs35135981	TA	T	7347.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:67,238:0.78:305
chr1	152009530	rs3811422	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	152059580	rs16833835	G	C	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.821;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:505,112:0.18:617
chr1	152079823	rs1131473	C	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.485;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:300,51:0.15:351
chr1	152079989	rs1131471	T	G	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.141;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:453,94:0.17:547
chr1	152081921	rs2496253	G	C	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.755;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:403,117:0.23:520
chr1	152085505	rs2515663	A	C	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	152129065	.	GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA	G	5754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DP=1323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.30;MQRankSum=28.422;QD=4.89;ReadPosRankSum=1.587;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:967,211:0.18:1178
chr1	152130539	rs77098473	C	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	152191709	rs6662450	C	G	22733.77	.	AC=2;AF=1.00;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	1/1:0,869:1.00:869
chr1	152191879	rs10788828	G	A	16166.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr1	152192114	rs7520249	C	T	12106.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:31,486:0.94:517
chr1	152192163	rs61814943	G	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-11.605;QD=0.43;ReadPosRankSum=5.303;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:331,49:0.13:380
chr1	152192293	rs7520375	C	T	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	152192631	rs6587647	C	T	30630.77	.	AC=2;AF=1.00;AN=2;DB;DP=1164;set=Intersection	GT:AD:AF:DP	1/1:0,1153:1.00:1153
chr1	152192687	rs6587648	T	C	29264.77	.	AC=2;AF=1.00;AN=2;DB;DP=1116;set=Intersection	GT:AD:AF:DP	1/1:0,1112:1.00:1112
chr1	152192978	rs6587649	T	C	25946.77	.	AC=2;AF=1.00;AN=2;DB;DP=1006;set=Intersection	GT:AD:AF:DP	1/1:0,990:1.00:990
chr1	152193052	rs6587650	A	G	24679.77	.	AC=2;AF=1.00;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	1/1:0,954:1.00:954
chr1	152193121	rs6587651	G	T	13663.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	152193291	rs6587652	G	T	25547.77	.	AC=2;AF=1.00;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	1/1:0,952:1.00:952
chr1	152193544	rs7535536	A	G	28453.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,641:1.00:641
chr1	152193547	rs6587653	G	A	28246.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,627:1.00:627
chr1	152193851	rs11204937	C	T	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	152193990	rs11204938	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	152195728	rs34061715	AT	A	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.201;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:169,72:0.30:241
chr1	152276889	rs3126067	A	G	19706.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:2,754:1.00:756
chr1	152280782	rs2184953	A	G	26600.77	.	AC=2;AF=1.00;AN=2;DB;DP=1045;set=Intersection	GT:AD:AF:DP	1/1:0,1023:1.00:1023
chr1	152281624	.	TT	CG	26075.77	.	AC=2;AF=1.00;AN=2;DP=992;JOINED;set=Intersection	GT:AD:AF:DP	1/1:5,979:0.99:984
chr1	152281640	rs141653633	G	A	48915.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.47;MQRankSum=-2.560;QD=45.80;ReadPosRankSum=0.123;SOR=0.492;set=HC	GT:AD:AF:DP	1/1:3,1065:1.00:1068
chr1	152281644	.	TGA	CTC	49178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DP=1077;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.55;MQRankSum=-2.545;QD=45.79;ReadPosRankSum=0.160;SOR=0.500;set=HC	GT:AD:AF:DP	1/1:3,1071:1.00:1074
chr1	152286040	rs76955400	C	T	22521.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,844:1.00:844
chr1	152286388	rs75429799	G	A	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	152328411	rs6679449	A	G	21624.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.46;QD=29.18;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,741:1.00:741
chr1	152382148	rs13374172	C	T	16457.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:1,618:1.00:619
chr1	152384630	rs35639220	G	A	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	152488063	rs1053588	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:117,41:0.26:158
chr1	152488146	rs16834168	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr1	152636671	rs28576017	C	T	30254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=1803;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-0.466;QD=16.90;ReadPosRankSum=1.121;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:415,1375:0.77:1790
chr1	152637043	rs149688907	C	CAGA	453.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	152648707	rs12074920	C	A	7048.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:88,295:0.77:383
chr1	152648950	rs12060809	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr1	152671436	rs58733562	G	A	25529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=1518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.310;QD=16.97;ReadPosRankSum=-0.741;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:334,1170:0.78:1504
chr1	152681543	rs1332496	T	C	28467.77	.	AC=2;AF=1.00;AN=2;DB;DP=1092;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.21;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,1086:1.00:1086
chr1	152681560	rs147765240	C	A	24850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=1420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.011;QD=17.59;ReadPosRankSum=-0.414;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:279,1134:0.80:1413
chr1	152681680	rs6143428	C	CAGCTCTGGGGGCTGCTGT	18200.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=1074;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=-0.149;QD=28.17;ReadPosRankSum=0.047;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:5,641:0.99:646
chr1	152691943	rs1332499	G	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:28,111:0.80:139
chr1	152692074	rs1332500	G	C	10422.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:125,465:0.79:590
chr1	152692472	rs873775	A	C	21118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1223;set=Intersection	GT:AD:AF:DP	0/1:279,925:0.77:1204
chr1	152692588	rs944682	A	G	15600.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:206,707:0.77:913
chr1	152692781	rs3814350	G	T	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:54,140:0.72:194
chr1	152692862	rs3814351	G	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	152732401	rs16834457	T	C	5790.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:77,257:0.77:334
chr1	152732436	rs4845480	G	C	9009.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr1	152733195	rs77759696	T	C	26553.77	.	AC=1;AF=0.500;AN=2;DB;DP=1449;set=Intersection	GT:AD:AF:DP	0/1:270,1157:0.81:1427
chr1	152733301	rs4329520	T	A	48309.77	.	AC=2;AF=1.00;AN=2;DB;DP=1892;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,1831:1.00:1831
chr1	152759950	rs11205106	A	G	17541.73	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,690:1.00:690
chr1	152777868	rs36107483	A	G	8380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=1341;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.056;QD=6.28;ReadPosRankSum=-3.867;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:979,356:0.27:1335
chr1	152777874	.	T	A	3698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DP=1374;ExcessHet=3.0103;FS=8.974;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-10.233;QD=2.71;ReadPosRankSum=-8.557;SOR=1.558;set=HC	GT:AD:AF:DP	0/1:1193,173:0.13:1366
chr1	152777877	.	G	A	3908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DP=1370;ExcessHet=3.0103;FS=10.072;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-10.408;QD=2.87;ReadPosRankSum=-7.681;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:1172,190:0.14:1362
chr1	152799921	rs113402613	C	T	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	152799933	rs202041640	AAC	A	7567.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	152799937	rs58235635	C	T	7661.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.10;QD=46.16;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	152799940	rs200129394	A	G	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.32;QD=45.88;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	152799943	rs4999559	G	A	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.51;QD=46.71;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	152799946	rs191474114	G	A	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.21;QD=43.39;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	152816011	rs144052931	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.335;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:490,94:0.16:584
chr1	152856937	rs61731350	A	G	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.392;QD=3.39;ReadPosRankSum=-0.770;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:272,95:0.26:367
chr1	152856995	rs61744935	C	G	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.258;QD=3.27;ReadPosRankSum=0.642;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:527,161:0.23:688
chr1	152857102	rs61744941	G	A	3242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=1106;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.854;QD=2.96;ReadPosRankSum=0.632;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:848,246:0.22:1094
chr1	152857292	rs115379529	C	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.225;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.368;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:342,73:0.18:415
chr1	152882610	rs2229496	A	G	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.756;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:271,65:0.19:336
chr1	152882748	rs115821967	C	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.401;QD=1.61;ReadPosRankSum=1.619;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:274,42:0.13:316
chr1	152882808	rs7520592	C	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.059;QD=1.56;ReadPosRankSum=-1.300;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:312,51:0.14:363
chr1	152882982	rs7520711	C	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=0.509;QD=1.29;ReadPosRankSum=-1.087;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr1	152883608	rs7545413	G	A	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.453;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:344,94:0.21:438
chr1	152883680	rs7535306	A	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.041;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=2.131;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:491,79:0.14:570
chr1	152883711	rs7545520	G	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.873;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.059;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:578,92:0.14:670
chr1	152884111	rs913996	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr1	152944351	rs12071966	A	G	7361.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:65,330:0.84:395
chr1	152944388	.	C	CA	2855.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.887;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:542,108:0.17:650
chr1	152944389	.	G	GCAGCAGCAGCA	2692.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=2.406;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:543,121:0.18:664
chr1	152944499	rs16834786	C	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=1168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.147;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:951,200:0.17:1151
chr1	152944594	rs3170863	C	T	19953.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:1,747:1.00:748
chr1	152944682	rs73010458	C	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.211;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:211,37:0.15:248
chr1	152944763	rs181364609	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	152944778	rs73010459	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	152957573	rs1611760	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	152957832	rs1611762	C	A	11814.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:125,501:0.80:626
chr1	152957887	rs1611764	G	A	13455.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:133,563:0.81:696
chr1	152975495	rs2075739	G	A	8758.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:116,395:0.77:511
chr1	152975658	rs67156933	AGAGCCAGGCTGTACCAAGGTCCCT	A	1683.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr1	152975763	rs1977734	C	A	4855.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:38,132:0.78:170
chr1	152975829	rs1970328	A	G	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:91,248:0.73:339
chr1	152975941	rs1055935	C	G	7796.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:88,346:0.80:434
chr1	153004721	rs1334848	A	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:22,82:0.79:104
chr1	153004778	rs3820141	C	T	7343.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:92,327:0.78:419
chr1	153004809	rs3181787	T	C	10892.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:132,493:0.79:625
chr1	153004848	rs3795381	T	C	23197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.416;QD=31.31;ReadPosRankSum=-0.322;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:165,576:0.78:741
chr1	153004853	rs3795382	C	T	24043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.783;QD=30.75;ReadPosRankSum=-1.525;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:170,612:0.78:782
chr1	153004983	rs12195	C	T	12367.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:107,509:0.83:616
chr1	153005156	rs2711	C	T	17869.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:181,794:0.81:975
chr1	153113139	rs2291979	G	A	1443.28	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:9,65:0.88:74
chr1	153122310	rs510277	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,63:0.73:86
chr1	153177069	rs16835050	A	G	492.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr1	153177493	rs77806119	A	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:46,176:0.79:222
chr1	153233488	rs150026164	C	CGGCGGT	2391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=5.751;QD=4.67;ReadPosRankSum=1.966;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:365,147:0.29:512
chr1	153233701	rs1143390	A	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr1	153233991	rs11275959	A	ACTCTGGCGGCGG	1800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.651;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=6.852;QD=9.09;ReadPosRankSum=0.607;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:142,56:0.28:198
chr1	153234295	rs12043009	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:281,133:0.32:414
chr1	153271524	rs821431	C	T	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:70,118:0.63:188
chr1	153279462	rs66966700	TAAG	T	2523.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:155,74:0.32:229
chr1	153283004	rs821423	C	T	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.239;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:270,146:0.35:416
chr1	153283179	rs3006473	A	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:103,45:0.30:148
chr1	153313044	rs12063091	C	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:64,132:0.67:196
chr1	153314153	rs3006448	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr1	153315467	rs5777858	T	TAAG	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	153315579	rs3014863	A	G	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	153315784	rs1865234	T	C	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	153318451	rs12070717	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr1	153320334	rs3006457	T	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=2.296;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:277,93:0.25:370
chr1	153320372	rs3006458	T	G	1837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.181;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:348,132:0.28:480
chr1	153320401	rs12096209	G	A	8075.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:130,373:0.74:503
chr1	153320581	rs3006459	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr1	153391729	rs3006414	G	A	7974.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:201,370:0.65:571
chr1	153391786	rs3014813	T	C	9066.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:238,431:0.64:669
chr1	153409448	rs76468638	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	153410822	rs10888561	C	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,29:0.30:98
chr1	153412198	rs140842119	C	A	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:62,100:0.62:162
chr1	153412392	rs3006428	T	G	14329.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,551:1.00:552
chr1	153431406	rs3014837	C	G	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	153517092	rs138957616	GC	G	8351.73	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:221,294:0.57:515
chr1	153517172	rs1050923	T	C	16942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=1312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.775;QD=13.01;ReadPosRankSum=0.014;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:502,800:0.61:1302
chr1	153520138	rs41265162	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,113:0.67:169
chr1	153520203	rs41265164	G	A	6070.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:131,274:0.68:405
chr1	153520400	rs56089062	T	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr1	153520714	rs34557489	T	TC	2090.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:45,76:0.63:121
chr1	153520784	rs28718953	C	A	9727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.774;QD=26.36;ReadPosRankSum=1.573;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:137,232:0.63:369
chr1	153520790	rs28594230	G	C	10822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.771;QD=25.35;ReadPosRankSum=1.184;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:158,269:0.63:427
chr1	153520804	rs28452456	A	G	12133.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:191,332:0.63:523
chr1	153520954	rs36022742	C	T	10968.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:249,508:0.67:757
chr1	153521018	rs28548347	A	C	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:87,181:0.68:268
chr1	153533898	rs8401	A	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr1	153534027	rs1047325	C	T	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:115,197:0.63:312
chr1	153587308	rs11548104	C	T	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:51,162:0.76:213
chr1	153588340	rs11548103	C	T	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-2.038;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:395,79:0.17:474
chr1	153600778	rs3806233	G	A	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:34,114:0.77:148
chr1	153604029	rs1046379	C	T	10933.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	153609039	rs4845557	T	C	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:49,184:0.79:233
chr1	153632139	rs6692298	G	C	3019.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:44,136:0.76:180
chr1	153635425	rs3795396	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	153636432	rs10598064	TTAC	T	1073.14	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	153636860	rs4351684	A	G	6852.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:76,312:0.80:388
chr1	153640827	rs7536700	C	T	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:56,165:0.75:221
chr1	153642835	rs6663046	G	C	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	153651589	rs13305995	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:4,40:0.91:44
chr1	153651600	rs13305996	C	A	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.71;ReadPosRankSum=1.502;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:6,46:0.88:52
chr1	153662544	.	ATCTCTCTC	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-1.301;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	153662584	rs61806720	G	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-2.114;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr1	153662617	.	T	A	251	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=27;MQ=52.67;NF=5;NR=10;PP=251;QD=19.0514141698;SC=TCTCTCTCTCTCACACACACA;SbPval=0.77;Source=Platypus;TC=27;TCF=11;TCR=16;TR=15;WE=153662625;WS=153662607;set=Platypus	GT:AD:AF:DP	1/0:12,15:0.56:27
chr1	153662617	rs149726910	T	TCA	145.75	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	153701376	rs12074957	G	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	153713748	rs188074280	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.752;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:214,50:0.19:264
chr1	153736711	rs3842687	T	TCC	8886.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:42,227:0.84:269
chr1	153742534	.	GGTGT	G	253.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.000;QD=31.73;ReadPosRankSum=0.489;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	153742610	.	G	GGT	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.18;MQRankSum=1.882;QD=24.24;ReadPosRankSum=-1.670;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	153743234	rs6675978	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.494;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:199,53:0.21:252
chr1	153744496	.	C	CGGT	13126.73	.	AC=1;AF=0.500;AN=2;DP=1126;set=Intersection	GT:AD:AF:DP	0/1:233,628:0.73:861
chr1	153750190	rs78068650	T	C	6629.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:87,303:0.78:390
chr1	153784094	rs112979659	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr1	153784666	rs11264420	CT	C	900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.743;QD=9.79;ReadPosRankSum=1.749;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:18,74:0.80:92
chr1	153790790	rs35175263	CT	C	222.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-0.463;QD=12.37;ReadPosRankSum=-0.299;SOR=0.204;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	153792049	rs113536045	A	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr1	153800931	.	TACACAC	T	575.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.38;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	153954778	rs371625659	AAC	A	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	153967487	.	C	CA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.713;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr1	154033329	rs72070929	ATAAG	A	1336.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	154061855	rs2066135	T	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	154076366	rs7521047	T	C	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	154108387	rs3001361	G	A	8391.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	154112167	rs2500223	A	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=3.16;ReadPosRankSum=2.557;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr1	154185122	rs143492793	GAT	G	1876.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr1	154192463	.	G	GTT	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.915;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr1	154227292	.	GT	G	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.869;QD=0.88;ReadPosRankSum=2.323;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:311,97:0.24:408
chr1	154243115	rs1044013	C	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:16,69:0.81:85
chr1	154243244	.	TTG	T	79.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.28;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	154285052	rs11265530	G	A	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:21,111:0.84:132
chr1	154285078	rs11581043	T	G	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-2.873;QD=15.90;ReadPosRankSum=1.397;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:19,69:0.78:88
chr1	154294656	rs1194607	T	C	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:27,111:0.80:138
chr1	154296076	rs1194610	T	C	5352.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:50,241:0.83:291
chr1	154302826	rs6691345	C	T	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:67,190:0.74:257
chr1	154305010	rs1209264	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	154310048	rs1760795	C	G	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.439;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:327,93:0.22:420
chr1	154310223	rs11448687	G	GA	1627.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:21,86:0.80:107
chr1	154313232	rs1194588	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-1.334;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr1	154317153	rs1194587	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=1.336;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:339,83:0.20:422
chr1	154317418	rs1194586	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.978;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr1	154321072	rs1194591	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	154401796	rs2229237	C	T	9730.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:146,441:0.75:587
chr1	154401972	rs6694817	T	C	5767.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:68,255:0.79:323
chr1	154408340	rs4845371	T	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	154409893	rs71586015	A	AT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.269;QD=0.31;ReadPosRankSum=-0.552;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:161,32:0.17:193
chr1	154420402	rs7512646	G	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr1	154422580	.	C	CTGTG,CTG	852.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=50;set=Intersection	GT:AF:DP	0/1:0.88:25
chr1	154437896	rs2229238	T	C	9928.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr1	154442960	rs11265621	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.182;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:113,27:0.19:140
chr1	154459197	rs4845633	C	G	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	154474131	rs4845635	C	G	9938.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	154474557	rs6703672	T	C	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	154479657	rs10654618	C	CAT	2950.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	154479934	rs7524349	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	154492702	rs10908842	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.145;QD=1.34;ReadPosRankSum=-0.525;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr1	154493721	rs6684225	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr1	154514331	rs4845647	C	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	154515414	rs180896945	T	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr1	154516571	rs6678164	T	C	20102.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr1	154523215	rs4520411	C	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	154523259	.	A	G	185.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	154523588	rs10908849	T	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	154528053	rs56047170	G	A	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:35,113:0.76:148
chr1	154528086	rs4078519	T	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	154540717	rs12062226	A	G	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:52,226:0.81:278
chr1	154542092	rs3926124	A	G	8950.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:76,394:0.84:470
chr1	154548384	rs144813907	C	T	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=1465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.162;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:1191,264:0.18:1455
chr1	154561228	rs72999488	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr1	154561261	rs9427095	G	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	154561925	rs1127309	C	T	6026.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:82,277:0.77:359
chr1	154562186	rs72999489	C	T	11771.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:133,518:0.80:651
chr1	154562617	.	A	AC	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.788;QD=4.47;ReadPosRankSum=-0.461;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:50,33:0.40:83
chr1	154562625	rs7532276	G	C	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:8,77:0.91:85
chr1	154571174	rs143817514	T	TGGA	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	154573967	rs2229857	T	C	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.638;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:616,149:0.19:765
chr1	154574820	rs1466731	T	C	17841.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr1	154575040	rs1802645	C	T	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	154580285	.	ACC	A	2974	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=1;MGOF=65;MMLQ=26;MQ=58.25;NF=134;NR=80;PP=2974;QD=20;SC=GACGACACACACCCACACACA;SbPval=0.64;Source=Platypus;TC=310;TCF=186;TCR=124;TR=214;WE=154580296;WS=154580275;set=Platypus	GT:AD:AF:DP	1/0:96,214:0.69:310
chr1	154580348	rs71586026	G	GAC	33078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=1780;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.014;QD=20.70;ReadPosRankSum=-1.691;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:537,1061:0.66:1598
chr1	154580458	rs58655370	C	A	3742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=1446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-2.119;QD=2.62;ReadPosRankSum=-1.216;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:1120,311:0.22:1431
chr1	154600372	rs6426859	A	G	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	154709688	.	G	C	1528.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.040;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=14.149;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=2.528;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:10,70:0.88:80
chr1	154744852	rs1131820	A	G	8369.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	154832304	rs4845397	T	C	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:36,155:0.81:191
chr1	154832322	rs1218586	A	C	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	154842199	rs367921715	GGCT	G,GGCTGCTGCTGCTGCTGCTGCTGCT	5027.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=433;set=Intersection	GT:AF:DP	1/2:0.29,0.68:215
chr1	154842238	.	T	TGCTGCTGCTGCTGCTGCTGAA	2995	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=27;MQ=58.71;NF=32;NR=69;PP=2995;QD=20;SC=CTGCTGCTGCTGCTGAAGCTG;SbPval=0.37;Source=Platypus;TC=187;TCF=54;TCR=133;TR=101;WE=154842246;WS=154842228;set=Platypus	GT:AD:AF:DP	0/1:86,101:0.54:187
chr1	154842330	.	T	TTGC	14311.73	.	AC=1;AF=0.500;AN=2;DP=613;set=Intersection	GT:AD:AF:DP	0/1:154,361:0.70:515
chr1	154904840	rs1891805	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.981;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr1	154917701	rs906594	A	G	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	154924176	rs72997354	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.420;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr1	154938235	rs1131397	G	C	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.013;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:346,74:0.18:420
chr1	154938662	rs8191979	T	C	2464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.950;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:574,184:0.24:758
chr1	154964929	rs10683289	T	TAGAC	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	154965113	rs7535144	G	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.225;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:149,25:0.14:174
chr1	154988957	rs2242195	A	G	20520.77	.	AC=1;AF=0.500;AN=2;DB;DP=1188;set=Intersection	GT:AD:AF:DP	0/1:250,918:0.79:1168
chr1	155003954	rs11582128	G	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:17,90:0.84:107
chr1	155006450	rs74520550	CC	AG	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.711;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr1	155013965	rs111387318	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.650;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:426,88:0.17:514
chr1	155019710	rs11264300	A	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:42,135:0.76:177
chr1	155020321	.	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.189;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:303,46:0.13:349
chr1	155026114	rs6660884	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	155026871	rs11548311	G	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.167;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:406,101:0.20:507
chr1	155026942	rs6427128	A	C	17327.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:1,683:1.00:684
chr1	155028522	rs11264302	G	A	3060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;ClippingRankSum=0.000;DB;DP=1442;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.577;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:1137,284:0.20:1421
chr1	155030557	rs11264303	A	C	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=1517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.615;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:1216,279:0.19:1495
chr1	155031376	rs12023499	C	T	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr1	155033317	rs11264304	T	C	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	155033918	rs41264285	C	T	9624.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:119,438:0.79:557
chr1	155057499	rs3766918	A	G	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	155058816	rs182820721	T	C	6094.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:84,253:0.75:337
chr1	155058820	rs112260947	T	TGCTGCC	5451.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:85,233:0.73:318
chr1	155059035	rs11449003	T	TG	7465.73	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:126,363:0.74:489
chr1	155106550	rs9297	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-2.028;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:535,114:0.18:649
chr1	155109218	.	C	CA	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.283;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr1	155142210	rs4421576	A	G	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.190;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:212,53:0.20:265
chr1	155142229	rs4276914	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.432;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:230,58:0.20:288
chr1	155145845	rs112636963	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.771;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:540,104:0.16:644
chr1	155150593	rs61756357	G	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.649;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:202,47:0.19:249
chr1	155162067	rs4072037	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.679;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:190,53:0.22:243
chr1	155165257	.	A	G	2477.77	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:20,106:0.84:126
chr1	155167786	rs41264915	A	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.244;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:548,138:0.20:686
chr1	155172725	rs35154152	T	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.715;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:623,148:0.19:771
chr1	155178782	rs760077	A	T	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=6.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.068;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:245,56:0.19:301
chr1	155181843	rs2974935	G	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-1.069;QD=2.64;ReadPosRankSum=1.543;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr1	155182164	rs2075570	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-1.907;QD=2.61;ReadPosRankSum=-0.460;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:299,81:0.21:380
chr1	155184975	rs140081212	A	G	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-0.591;QD=2.39;ReadPosRankSum=2.319;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:549,143:0.21:692
chr1	155186729	rs28445596	T	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=6.073;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-2.844;QD=1.78;ReadPosRankSum=2.592;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:324,73:0.18:397
chr1	155202689	rs10796940	A	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-0.109;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:111,16:0.13:127
chr1	155203060	rs56310840	G	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=0.792;QD=2.43;ReadPosRankSum=1.853;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:178,47:0.21:225
chr1	155205669	rs28559737	G	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-2.712;QD=1.63;ReadPosRankSum=1.498;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:366,80:0.18:446
chr1	155206341	rs9628662	T	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.453;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:217,57:0.21:274
chr1	155209360	rs2075569	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.255;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	155217435	.	AGG	A	339.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.445;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr1	155217438	rs199735676	A	ATT	339.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.349;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	155218168	rs2075568	T	C	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.537;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:470,99:0.17:569
chr1	155221837	rs2072647	C	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.075;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr1	155224091	rs2075566	C	A	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-2.637;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:190,48:0.20:238
chr1	155224301	rs2242577	C	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.215;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:247,54:0.18:301
chr1	155230131	rs1142287	C	T	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=2.237;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:376,101:0.21:477
chr1	155231545	rs2242576	T	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.756;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:236,45:0.16:281
chr1	155231626	rs79051383	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.481;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr1	155239624	rs2361543	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=5.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.256;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:71,18:0.20:89
chr1	155255837	rs11264352	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.183;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr1	155257492	rs11264355	C	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.129;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:106,19:0.15:125
chr1	155260350	rs1052177	A	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.209;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:504,110:0.18:614
chr1	155260383	rs1052176	G	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.233;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:684,161:0.19:845
chr1	155265177	rs2071053	A	G	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.985;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.557;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:527,113:0.18:640
chr1	155265192	rs8177972	G	A	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.309;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:549,116:0.17:665
chr1	155269776	rs3020781	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.348;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	155279482	rs2297480	T	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.977;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr1	155280104	rs35556344	C	CT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.179;QD=1.26;ReadPosRankSum=0.167;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr1	155289545	rs11264361	T	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.174;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:342,72:0.17:414
chr1	155294274	rs914616	A	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.713;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:339,85:0.20:424
chr1	155294772	rs4971075	A	G	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.599;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:190,44:0.19:234
chr1	155313047	rs4971051	T	C	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.380;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr1	155385782	.	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.931;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	155408635	rs4971053	T	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.944;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:322,79:0.20:401
chr1	155532316	rs12403379	T	C	30536.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=44.84;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr1	155532325	rs12403380	T	C	35190.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=46.98;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,749:1.00:749
chr1	155532332	rs34869594	T	C	36462.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.64;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,799:1.00:799
chr1	155532341	rs61812107	T	C	38335.77	.	AC=2;AF=1.00;AN=2;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=42.60;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,900:1.00:900
chr1	155618415	rs5777949	CT	C	1447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.459;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.134;QD=2.48;ReadPosRankSum=0.286;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:473,110:0.19:583
chr1	155630462	rs182978	T	C	8837.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:105,394:0.79:499
chr1	155631307	.	A	AACACAC,AACAC	755.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=34;set=Intersection	GT:AF:DP	1/1:1.00:18
chr1	155640434	rs34077221	AG	A	628.19	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr1	155650386	rs670787	C	G	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.05;ReadPosRankSum=-1.072;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr1	155658085	rs2666826	T	C	8866.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:80,385:0.83:465
chr1	155658672	rs512551	G	A	12091.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:133,548:0.80:681
chr1	155659119	rs662116	T	A	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:65,176:0.73:241
chr1	155679543	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.599;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:139,29:0.17:168
chr1	155686739	.	C	CA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.437;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:83,34:0.29:117
chr1	155691191	rs71862030	GTA	G	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	155721678	rs3863762	T	C	22891.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:1,888:1.00:889
chr1	155737385	rs849712	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=25.79;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	155746340	rs60525991	CT	C	298.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.245;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=1.559;SOR=0.556;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	155755097	rs822021	G	A	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	155785578	rs148569012	CAACT	C	6731.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr1	155790378	rs75476081	A	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	155792322	rs16837056	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	155822971	rs822490	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	155823002	rs822491	T	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	155829360	rs1749412	C	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	155837865	rs822522	G	C	15198.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr1	155838267	rs822521	T	C	14584.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr1	155850558	rs822508	T	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	155850811	rs822509	G	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	155870416	rs1749409	G	A	15323.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr1	155880573	rs493446	C	G	11503.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	155880760	rs5777961	C	CA	2298.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	155891045	rs625658	A	C	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	155891877	rs4020747	C	CAG	1928.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	155899020	rs539602	A	T	11252.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr1	155903310	rs4661150	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	155903408	rs4661151	C	T	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr1	155904177	rs2275079	T	C	63775.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=2475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=3.372;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:4,2451:1.00:2455
chr1	155904392	rs2275081	G	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	155912486	rs2152051	T	C	16925.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr1	155917880	rs1010033	T	A	17845.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr1	155928232	rs2364404	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.33;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	155928242	rs2886069	C	T	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	155931368	rs4661175	G	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	155941871	rs111380627	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.482;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr1	155954945	.	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.461;QD=2.44;ReadPosRankSum=-1.262;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	155955076	rs4661216	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	155981489	rs1475766	C	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	156011444	rs2297792	T	C	8496.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	156095848	rs2475758	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.329;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr1	156096387	rs593987	G	A	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.285;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:162,34:0.17:196
chr1	156096417	rs594028	T	G	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	156099669	rs513043	T	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	156104083	rs78499673	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.769;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr1	156104375	rs11264442	G	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr1	156104392	rs11264443	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr1	156105028	rs538089	T	C	9338.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:95,432:0.82:527
chr1	156105609	rs646840	G	T	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:49,201:0.80:250
chr1	156105928	rs534807	G	A	7244.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:93,321:0.78:414
chr1	156105962	rs16837198	A	G	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.766;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:370,97:0.21:467
chr1	156106185	rs505058	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	156106863	rs553016	C	T	10933.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:115,479:0.81:594
chr1	156108976	rs7339	G	C	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:32,108:0.77:140
chr1	156128337	rs10908489	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.048;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:187,36:0.16:223
chr1	156131095	rs201004039	C	CGGGGCGG	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=19.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.64;ReadPosRankSum=0.810;SOR=2.775;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	156131109	.	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=5.847;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr1	156146086	.	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=5.331;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.515;QD=1.85;ReadPosRankSum=1.379;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr1	156146825	rs41265023	T	C	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.254;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:218,62:0.22:280
chr1	156169610	rs2072499	A	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.662;QD=3.95;ReadPosRankSum=-0.451;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:150,55:0.27:205
chr1	156182710	rs2241107	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.411;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	156202173	rs1052053	A	G	14193.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,556:1.00:557
chr1	156202300	rs2251615	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-1.772;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:123,19:0.13:142
chr1	156206121	rs1052067	G	A	10682.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:119,483:0.80:602
chr1	156209494	rs35683064	G	GC	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	156213921	rs7513351	C	T	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-2.116;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:552,156:0.22:708
chr1	156214553	rs34529052	G	A	8767.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:112,396:0.78:508
chr1	156215899	rs2075165	G	A	12872.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	156220056	rs1043165	T	C	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.810;QD=2.19;ReadPosRankSum=-0.024;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:170,43:0.20:213
chr1	156230141	rs2287025	T	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.822;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr1	156230189	rs145497932	C	CT	2941.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr1	156230206	rs2287024	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.570;QD=3.27;ReadPosRankSum=-0.676;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:120,41:0.25:161
chr1	156231266	rs759328	G	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=3.155;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:281,76:0.21:357
chr1	156233479	rs4661036	T	C	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.184;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:160,38:0.19:198
chr1	156236592	rs370875877	CT	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.109;QD=2.06;ReadPosRankSum=-2.053;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr1	156252568	rs201567192	G	GCCA	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.556;QD=5.32;ReadPosRankSum=-0.228;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:141,34:0.19:175
chr1	156255833	rs2842883	G	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	156261491	rs3795728	G	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.834;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:222,42:0.16:264
chr1	156279210	rs3001784	T	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	156287403	rs2296374	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.269;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr1	156288906	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.790;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	156304782	rs3762281	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.114;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	156305785	rs73008698	T	G	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:54,230:0.81:284
chr1	156314342	rs73010608	G	A	7754.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:77,351:0.82:428
chr1	156347131	rs2245623	G	A	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=1154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.518;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:940,194:0.17:1134
chr1	156347309	rs56353055	A	G	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:22,115:0.84:137
chr1	156351066	rs942679	C	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-1.515;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:251,63:0.20:314
chr1	156351699	rs3748569	G	A	9617.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:132,439:0.77:571
chr1	156351792	rs3748568	G	A	7275.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:96,324:0.77:420
chr1	156352012	rs752640	GT	AC	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.655;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.631;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:179,39:0.18:218
chr1	156352447	rs954916	G	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:13,68:0.84:81
chr1	156354293	rs6668731	A	G	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=1097;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.210;QD=1.36;ReadPosRankSum=0.608;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:897,184:0.17:1081
chr1	156354347	rs11303415	TC	T	3095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=1410;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.842;QD=2.30;ReadPosRankSum=0.639;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:1108,239:0.18:1347
chr1	156354367	rs6668857	A	G	34092.77	.	AC=2;AF=1.00;AN=2;DB;DP=1309;set=Intersection	GT:AD:AF:DP	1/1:1,1296:1.00:1297
chr1	156374256	rs3431	C	T	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:36,190:0.84:226
chr1	156376680	rs6662064	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	156446242	rs2274316	C	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.930;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:212,42:0.17:254
chr1	156446450	rs12131289	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.994;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:105,24:0.19:129
chr1	156446903	rs2274317	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.239;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:269,75:0.22:344
chr1	156450719	rs1185700	G	A	7953.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:82,351:0.81:433
chr1	156450740	rs1925950	G	A	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-2.148;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:318,82:0.20:400
chr1	156452870	rs2282286	G	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.310;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:80,27:0.25:107
chr1	156496188	rs6427315	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	156498673	rs1171564	T	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.148;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:205,56:0.21:261
chr1	156499969	rs1171566	T	C	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.960;ClippingRankSum=0.000;DB;DP=904;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.862;QD=2.43;ReadPosRankSum=0.126;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:685,170:0.20:855
chr1	156500128	rs746505	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.017;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.087;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr1	156502958	.	CAT	C	360.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.733;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:211,35:0.14:246
chr1	156502960	.	T	C	3580.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.953;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=1.153;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:102,144:0.59:246
chr1	156502991	rs1609666	A	G	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.477;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr1	156503541	rs6699212	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	156505061	rs942965	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:78,21:0.21:99
chr1	156509552	rs1171570	C	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	156518379	rs744224	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=4.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.265;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:312,69:0.18:381
chr1	156518433	rs11264496	C	T	7095.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:74,324:0.81:398
chr1	156520173	rs1778819	T	A	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	156524221	rs6694580	G	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.118;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:129,39:0.23:168
chr1	156526234	rs2489139	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	156526444	rs2488269	T	C	8724.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	156526564	rs2489138	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.996;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	156531871	rs1171545	A	G	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr1	156532344	rs7548309	T	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:19,82:0.81:101
chr1	156532908	rs16837492	C	A	5522.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:68,251:0.79:319
chr1	156532977	rs1171547	T	C	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	156534539	rs4661185	G	A	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.33;ReadPosRankSum=1.248;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr1	156534539	.	GCG	ACA	660	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=13;PP=660;QD=47.5645249908;SC=ACCACCAAATGCGGAGAGGGG;SbPval=0.67;Source=Platypus;TC=20;TCF=3;TCR=17;TR=15;WE=156534549;WS=156534529;set=Platypus	GT:AD:AF:DP	1/0:5,15:0.75:20
chr1	156534541	rs7517529	G	A	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.28;ReadPosRankSum=1.223;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr1	156536123	rs2066378	T	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=2.457;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	156536133	rs4382715	A	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	156536221	rs2066377	G	C	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	156536251	rs947662	T	C	12017.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr1	156536353	rs947663	A	G	13595.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=8.848;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=31.351;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.69;ReadPosRankSum=0.928;SOR=0.177;set=HC	GT:AD:AF:DP	1/1:40,617:0.94:657
chr1	156536480	rs947664	T	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	156539154	rs6427319	T	C	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	156539320	rs34005985	C	CT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.363;QD=5.68;ReadPosRankSum=-0.270;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	156552981	rs60400973	G	A	4914.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:62,220:0.78:282
chr1	156553762	rs11264502	A	C	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	156555577	rs147693801	C	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.511;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:705,132:0.16:837
chr1	156555819	rs12090808	A	G	4041.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:36,182:0.83:218
chr1	156561414	rs6698493	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	156561557	rs149629319	G	GGGGTC,GGGGCCGGGCC	2020.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/2:0.30,0.70:50
chr1	156561651	rs7516274	G	C	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	156562008	rs1925949	G	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	156562143	rs942959	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	156563375	rs6427321	G	A	12406.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr1	156563726	rs6427322	A	C	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	156563813	rs6668178	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	156563852	rs942963	C	T	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	156563898	rs1270	T	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	156564639	rs143922831	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:73,24:0.25:97
chr1	156564640	rs3795732	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:24,73:0.75:97
chr1	156564782	rs10598938	GTC	G	11131.73	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:130,500:0.79:630
chr1	156565049	rs72559129	A	AAC	40561.73	.	AC=2;AF=1.00;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	1/1:0,939:1.00:939
chr1	156565389	rs145851878	C	T	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=1058;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.853;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:849,185:0.18:1034
chr1	156567496	rs879461	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr1	156567552	rs144909799	C	A	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.204;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:143,32:0.18:175
chr1	156567847	rs141345590	G	C	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=2.510;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:336,89:0.21:425
chr1	156593928	rs149573918	G	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.577;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:198,42:0.17:240
chr1	156617968	rs2277873	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	156618768	rs4661209	T	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	156622252	rs1056695	G	A	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	156626358	rs6700323	C	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	156626920	rs7524611	T	C	24419.77	.	AC=2;AF=1.00;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	1/1:2,971:1.00:973
chr1	156627638	rs74118726	C	A	6283.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:92,304:0.77:396
chr1	156629037	rs11360	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	156639584	rs74118730	T	C	26922.77	.	AC=2;AF=1.00;AN=2;DB;DP=1043;set=Intersection	GT:AD:AF:DP	1/1:0,1022:1.00:1022
chr1	156639761	rs74118731	C	T	37369.77	.	AC=2;AF=1.00;AN=2;DB;DP=1464;set=Intersection	GT:AD:AF:DP	1/1:3,1415:1.00:1418
chr1	156640498	rs139056863	C	T	15413.77	.	AC=1;AF=0.500;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	0/1:206,698:0.77:904
chr1	156646668	rs4278369	A	G	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr1	156670289	rs74118739	A	C	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:72,237:0.77:309
chr1	156670545	rs4661213	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	156705593	rs4311877	G	C	22118.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:0,852:1.00:852
chr1	156706559	rs8658	A	C,G	1476.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.15,0.85:60
chr1	156707553	rs114941158	G	C	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:21,146:0.87:167
chr1	156707775	rs6670122	T	G	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	156713512	rs4437869	C	T	5070.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=0.679;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,192:0.99:194
chr1	156752048	rs2274503	C	G	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	156752231	rs367770256	AT	A	206.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	156784982	rs926103	T	C	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:73,167:0.70:240
chr1	156785544	rs146775862	AC	A	6695.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:66,221:0.77:287
chr1	156785617	rs1800601	G	A	9067.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:137,406:0.75:543
chr1	156785762	rs11325907	AG	A	2876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=0.674;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:360,107:0.23:467
chr1	156785771	rs7546838	A	G	19067.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr1	156785779	rs1800600	G	A	18432.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	156841674	rs1410082	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr1	156845492	rs144271100	A	AGT	2700.73	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:131,146:0.53:277
chr1	156848968	rs6338	C	T	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:60,186:0.76:246
chr1	156849775	rs12076232	T	C	6753.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:87,292:0.77:379
chr1	156873666	rs58132897	C	T	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:43,149:0.78:192
chr1	156874874	rs78436112	TGG	T	2897.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:13,82:0.86:95
chr1	156875037	rs6676171	T	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr1	156875097	rs4661075	G	A	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:34,143:0.81:177
chr1	156875377	rs2644591	G	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	156875985	rs2644593	G	A	4341.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:49,192:0.80:241
chr1	156877457	rs1952294	T	C	13855.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:184,627:0.77:811
chr1	156878422	.	G	A	787.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	156881979	rs75966765	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.199;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr1	156882261	rs57731889	C	T	11008.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:150,491:0.77:641
chr1	156882590	rs75198597	G	A	22209.77	.	AC=1;AF=0.500;AN=2;DB;DP=1341;set=Intersection	GT:AD:AF:DP	0/1:320,1012:0.76:1332
chr1	156882996	rs822441	G	C	45195.77	.	AC=2;AF=1.00;AN=2;DB;DP=1761;set=Intersection	GT:AD:AF:DP	1/1:0,1746:1.00:1746
chr1	156883215	rs822442	C	A	3064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.301;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:541,208:0.28:749
chr1	156883546	rs12137505	A	G	7001.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:94,321:0.77:415
chr1	156884365	rs749256	T	C	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	156893758	.	G	T	7048.77	.	AC=1;AF=0.500;AN=2;DP=382;set=Intersection	GT:AD:AF:DP	0/1:58,320:0.85:378
chr1	156894006	rs822438	C	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	156902259	rs822430	G	A	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	156907081	rs945508	T	C	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	156907115	rs868188	T	C	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:63,177:0.74:240
chr1	156914240	rs5778015	CCATT	C	2969.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	156915038	rs2275201	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.660;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr1	156916640	rs111988963	G	GCCTATCCCTT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.860;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr1	156939175	rs1336149	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	156947961	rs373423595	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.632;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr1	156949153	.	C	CTT	368.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=2.040;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	156954267	rs6427339	C	T	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-1.250;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:173,52:0.23:225
chr1	157094714	rs62640944	G	A	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.916;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.467;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:673,162:0.19:835
chr1	157485275	rs3811036	T	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.262;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr1	157485720	rs1002967	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	157488085	rs1571967	C	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr1	157488487	rs6663265	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.012;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr1	157497597	rs73011545	C	T	6586.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:79,294:0.79:373
chr1	157497737	rs75327914	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.908;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr1	157509025	rs2012199	C	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.889;QD=1.19;ReadPosRankSum=1.172;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:613,120:0.16:733
chr1	157514091	rs12036228	C	T	14100.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	157514097	rs6679793	A	G	14376.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	157514685	rs11803066	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.268;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:360,97:0.21:457
chr1	157515990	rs115942842	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.545;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr1	157516220	.	A	AG	30	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=27;MMLQ=15;MQ=58.93;NF=0;NR=3;PP=30;QD=21.6666666667;SC=CCTGGGTGACAGAGCGAGACT;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=3;WE=157516228;WS=157516210;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr1	157517127	rs7531685	C	T	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:45,179:0.80:224
chr1	157519383	rs146307013	AAG	A	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=6.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.280;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:112,21:0.16:133
chr1	157522016	rs7552348	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	157548669	rs1885561	T	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	157551361	rs57507652	A	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:13,86:0.87:99
chr1	157557957	rs11799853	T	C	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:38,143:0.79:181
chr1	157567751	rs1361889	A	G	9637.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:101,442:0.81:543
chr1	157646724	rs115688987	A	G	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:38,7:0.16:45
chr1	157650960	rs12563943	T	C	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:31,93:0.75:124
chr1	157659769	rs141013458	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:22,111:0.83:133
chr1	157668390	rs7522061	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.371;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:206,53:0.20:259
chr1	157670286	rs113752575	C	T	9514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=1.169;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:77,429:0.85:506
chr1	157670290	rs945635	C	G	20800.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,495:1.00:495
chr1	157670394	rs73003413	G	C	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:33,115:0.78:148
chr1	157716579	rs56179831	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.832;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:140,25:0.15:165
chr1	157716592	rs16839017	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-2.976;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:128,26:0.17:154
chr1	157716620	rs74119648	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.005;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:101,17:0.14:118
chr1	157718231	.	CAAATAAATAAATAAAT	C	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.350;QD=3.64;ReadPosRankSum=0.640;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:114,21:0.16:135
chr1	157718283	rs6696643	A	T	8113.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	157718325	rs3818813	T	G	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.837;QD=2.74;ReadPosRankSum=0.839;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:369,110:0.23:479
chr1	157718430	rs2275232	T	G	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-1.104;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:278,60:0.18:338
chr1	157718645	rs2275233	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.203;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr1	157718780	rs3818814	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.280;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:100,27:0.21:127
chr1	157718835	rs6662117	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-2.521;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr1	157736673	rs34445670	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-1.826;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:403,62:0.13:465
chr1	157736912	rs61214619	C	A	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.470;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:672,158:0.19:830
chr1	157737304	rs57063136	C	T	6202.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:113,286:0.72:399
chr1	157737504	rs2873413	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	157740186	rs10540465	GTC	G	8879.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=66.96;MQRankSum=13.815;QD=31.83;ReadPosRankSum=1.784;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:62,217:0.78:279
chr1	157740187	.	TCA	GCA	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=22;MQ=67.01;NF=53,18;NR=55,55;PP=2962,2954;QD=20;SC=CCCACAGAAGTCAGGGTTTTA;SbPval=0.56;Source=Platypus;TC=135;TCF=67;TCR=68;TR=108,73;WE=157740196;WS=157740177;set=Platypus	GT:AD:AF:DP	0/1:27,108:0.80:135
chr1	157740187	.	TCA	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=22;MQ=67.01;NF=53,18;NR=55,55;PP=2962,2954;QD=20;SC=CCCACAGAAGTCAGGGTTTTA;SbPval=0.56;Source=Platypus;TC=135;TCF=67;TCR=68;TR=108,73;WE=157740196;WS=157740177;set=Platypus	GT:AD:AF:DP	0/1:17,73:0.81:90
chr1	157740189	rs57139984	A	G	8888.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.12;MQRankSum=13.867;QD=31.75;ReadPosRankSum=1.922;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:63,217:0.78:280
chr1	157744156	rs16839118	T	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.223;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:183,46:0.20:229
chr1	157746814	rs7527780	G	A	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=2.329;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:708,182:0.20:890
chr1	157766769	rs61001302	T	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	157767933	rs12079189	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.841;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr1	157768129	rs80229366	G	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.799;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:138,37:0.21:175
chr1	157769756	rs74121536	G	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.242;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr1	157802979	rs2261295	C	T	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	157805564	rs186317868	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.307;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr1	157806006	rs2765503	G	A	12306.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr1	157811392	rs2260040	G	A	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	157963362	rs148023130	GCGGGCTCC	G	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=14.591;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.407;QD=3.17;ReadPosRankSum=2.427;SOR=2.142;set=HC	GT:AD:AF:DP	0/1:120,21:0.15:141
chr1	158054379	rs927662	A	G	6172.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:57,273:0.83:330
chr1	158057633	rs36008419	C	G	5977.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:38,271:0.88:309
chr1	158057691	rs3820676	A	C	3496.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:25,152:0.86:177
chr1	158058266	.	CTTTTT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=8.362;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.782;QD=0.65;ReadPosRankSum=1.490;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr1	158059214	rs7513855	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.678;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr1	158146946	rs3021477	T	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	158153996	rs426336	T	C	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	158224575	rs370074413	CTGTGTGTGTGTG	CTG,C	3324.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=461;set=Intersection	GT:AF:DP	0/1:0.56:226
chr1	158224825	rs411089	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	158226465	rs34315183	CA	C	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:8,53:0.87:61
chr1	158260878	rs375739413	CT	C	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=4.535;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.711;QD=1.07;ReadPosRankSum=0.315;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:307,91:0.23:398
chr1	158261015	rs3138099	C	T	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.793;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:752,206:0.22:958
chr1	158297887	rs3176846	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	158298693	rs75664720	A	C	12412.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.75;SOR=2.020;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	158323253	rs57394063	T	C	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	158324425	rs1065457	A	G	9209.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	158389208	rs34276698	G	GA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=3.231;QD=0.54;ReadPosRankSum=-0.741;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr1	158390252	rs12239443	T	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.635;QD=1.21;ReadPosRankSum=-0.730;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:357,67:0.16:424
chr1	158390501	rs34616883	G	A	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;ClippingRankSum=0.000;DB;DP=929;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.624;QD=2.26;ReadPosRankSum=0.096;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:732,191:0.21:923
chr1	158435250	rs1002599	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.995;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr1	158435278	rs1573519	G	A	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.825;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:240,64:0.21:304
chr1	158435866	rs143023872	A	G	20520.77	.	AC=1;AF=0.500;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	0/1:217,905:0.81:1122
chr1	158436299	rs4657080	T	C	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.663;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:184,53:0.22:237
chr1	158436354	rs67123344	AT	A	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	158450238	rs3820678	G	A	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.471;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:718,148:0.17:866
chr1	158450314	rs6679056	A	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.992;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:595,109:0.15:704
chr1	158450382	rs1418843	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.846;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:424,87:0.17:511
chr1	158507157	rs2051665	A	T	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.034;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:167,43:0.20:210
chr1	158507160	rs2051666	T	G	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.254;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:181,46:0.20:227
chr1	158507184	rs2051068	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.387;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:259,59:0.19:318
chr1	158507222	rs5778082	GA	G	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.969;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:405,93:0.19:498
chr1	158507398	rs2051067	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.219;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:93,14:0.13:107
chr1	158517891	rs79396176	G	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr1	158532405	rs7526514	T	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.560;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	158532727	rs113799243	G	A	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.391;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:203,63:0.24:266
chr1	158533140	rs12080815	A	G	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.240;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:327,103:0.24:430
chr1	158533224	rs12081915	A	G	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.548;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:398,103:0.21:501
chr1	158533444	rs114756727	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:79,25:0.24:104
chr1	158548802	rs36102561	G	A	4412.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:47,197:0.81:244
chr1	158549264	rs863360	G	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-2.754;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:238,62:0.21:300
chr1	158549420	rs863361	C	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.174;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:232,68:0.23:300
chr1	158549492	rs863362	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.136;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:190,49:0.21:239
chr1	158549511	rs863363	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.121;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:204,52:0.20:256
chr1	158580921	rs66981873	GCA	G	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.641;QD=2.13;ReadPosRankSum=-0.602;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr1	158582497	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.895;QD=1.06;ReadPosRankSum=-0.252;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr1	158582543	rs2251963	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.732;QD=2.49;ReadPosRankSum=0.989;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:192,26:0.12:218
chr1	158582552	rs2251964	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.615;QD=2.33;ReadPosRankSum=0.086;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:210,31:0.13:241
chr1	158582646	rs2251969	T	C	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.127;QD=1.57;ReadPosRankSum=-0.735;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:274,61:0.18:335
chr1	158587390	rs857716	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=2.467;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:318,76:0.19:394
chr1	158587784	rs857717	T	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	158588916	rs7553252	C	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.741;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr1	158592935	rs3753068	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.694;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.635;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:334,61:0.15:395
chr1	158606449	rs3738791	G	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.784;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:223,36:0.14:259
chr1	158607788	rs2518492	T	G	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	158609673	rs374298000	A	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.987;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr1	158612068	rs191375739	G	A	417.82	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	158612236	rs863931	A	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-1.711;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:396,65:0.14:461
chr1	158618223	rs857677	C	T	1248.81	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:8,56:0.88:64
chr1	158618480	rs11265044	A	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-2.274;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chr1	158619728	rs2482965	A	C	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	158619822	rs857689	A	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	158626378	rs857691	C	T	10444.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.83;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	158626378	.	CAGAG	TAGAA,TAGAG	1335	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=24;MQ=59.89;NF=48,69;NR=44,61;PP=1335,417;QD=15.0920421181;SC=CCTGATTCCGCAGAGCTTTCA;SbPval=0.51;Source=Platypus;TC=133;TCF=70;TCR=63;TR=92,130;WE=158626390;WS=158626368;set=Platypus	GT:AF:DP	0/1:0.69:133
chr1	158626382	rs34706737	G	A	4280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=0.118;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:71,199:0.74:270
chr1	158627216	rs73018260	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr1	158627315	rs16840450	T	C	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:58,206:0.78:264
chr1	158631106	rs35121052	G	C	11767.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:132,534:0.80:666
chr1	158632440	rs7544849	A	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	158632531	rs7547313	T	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,90:0.75:120
chr1	158636224	rs12090314	C	T	8404.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	158637865	rs140998442	GAAA	G,GAA	931.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.98;MQRankSum=1.528;QD=11.95;ReadPosRankSum=2.453;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:12,15,51:0.19,0.65:78
chr1	158647495	rs325996	A	T	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.976;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:452,101:0.18:553
chr1	158647522	rs703121	A	G	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.399;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:378,86:0.19:464
chr1	158647631	rs325995	T	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.718;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:76,14:0.16:90
chr1	158654786	rs385096	C	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr1	158654852	rs857937	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=1.385;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:115,39:0.25:154
chr1	158655036	rs435080	G	A	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.679;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:399,75:0.16:474
chr1	158655162	rs2564859	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:161,49:0.23:210
chr1	158656281	rs2564858	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.733;QD=2.97;ReadPosRankSum=-0.201;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	158656347	rs111674514	C	CAGAG	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.811;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:70,13:0.16:83
chr1	158669977	rs423141	G	C	7078.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:97,323:0.77:420
chr1	158670426	rs413029	C	T	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:42,135:0.76:177
chr1	158687163	rs28568406	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=2.060;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:504,99:0.16:603
chr1	158687308	rs151330882	C	T	9576.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:145,436:0.75:581
chr1	158735595	rs857824	C	T	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	158735691	rs857825	T	C	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr1	158735740	rs857826	A	G	10636.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	158735892	rs857827	A	G	9167.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr1	158736068	rs114295831	G	A	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:42,221:0.84:263
chr1	158736215	rs6666753	G	A	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:43,190:0.82:233
chr1	158747506	rs11805711	C	G	696.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.50;ReadPosRankSum=0.716;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr1	158813819	rs857870	A	G	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.472;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:553,125:0.18:678
chr1	158817474	rs2261107	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.114;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	158909164	rs2325704	C	A	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	158913525	rs856082	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	158943295	.	TCA	T	1163.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.380;QD=24.76;ReadPosRankSum=0.396;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr1	158943382	rs12071136	C	A	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:47,226:0.83:273
chr1	158943537	rs142194663	G	T	14141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-0.282;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:179,652:0.78:831
chr1	158946629	rs145608153	A	AATATATGTAT	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=42.03;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	158946658	.	CTATATATATATATATATATATA	C	148.87	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.22;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	158986477	rs866484	G	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.847;QD=2.01;ReadPosRankSum=-0.877;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:600,148:0.20:748
chr1	158986594	rs73021861	C	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-1.806;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:174,42:0.19:216
chr1	158990247	rs1057024	A	G	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	159021445	rs3737522	A	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	159024424	rs7532207	A	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	159024668	rs6940	A	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	159159452	rs3026984	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	159162405	rs146412590	G	A	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:128,183:0.59:311
chr1	159163976	rs2814766	G	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	159166308	rs3026995	T	C	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr1	159167005	rs2746042	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	159169641	rs862999	T	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	159174683	rs2814778	T	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	159174824	rs863001	G	C	11431.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	159175004	rs17838198	CT	C	612.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	159175354	rs12075	G	A	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	159249451	rs57414108	T	TA	2654.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	159249743	rs11265163	G	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	159249743	.	GTG	TTT	1143	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=12;NR=18;PP=1143;QD=39.8822624954;SC=CCTTATCACTGTGTGGTTCTC;SbPval=0.55;Source=Platypus;TC=30;TCF=12;TCR=18;TR=30;WE=159249753;WS=159249733;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	159249745	rs11265164	G	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	159336315	rs7515532	G	A	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	159402290	rs55893819	C	T	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:158,175:0.53:333
chr1	159402584	rs11419544	G	GT	981.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr1	159409196	rs6691297	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr1	159409533	rs10908721	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr1	159409734	rs10908722	G	T	13264.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr1	159409857	rs12048482	A	G	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:123,142:0.54:265
chr1	159505202	rs56786307	T	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr1	159558258	rs2808661	A	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	159684047	.	CCA	C	77.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	159776243	rs12094789	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.578;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	159777848	rs11585055	A	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	159778363	rs111529495	C	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	159778396	rs60197485	C	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	159778622	rs73030816	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	159778662	rs73030817	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	159778758	rs60865130	T	C	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.270;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:175,141:0.45:316
chr1	159778983	rs12083967	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	159779138	rs12087590	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	159779460	rs113926240	G	A	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=0.652;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:93,91:0.49:184
chr1	159779464	rs115855950	TC	CT	3540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=0.205;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,91:0.51:180
chr1	159779693	rs73030821	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.354;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	159779985	rs73030822	G	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr1	159783148	rs55650803	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	159784174	rs80302193	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr1	159785284	rs4411129	C	G	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	159785370	rs4301626	T	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr1	159785425	rs4443889	A	G	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.680;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:58,56:0.49:114
chr1	159799599	rs11422063	C	CA	2767.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	159802627	rs2494480	A	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr1	159807969	rs2494491	A	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-1.499;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	159824967	rs2501340	G	C	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	159825061	rs2501339	G	C	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	159826561	rs111861505	C	CCA,CCACA	584.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.55;SOR=2.584;set=HC	GT:AD:AF:DP	1/2:0,6,10:0.38,0.62:16
chr1	159827416	rs4477268	C	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.97;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	159827456	rs2494503	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	159827475	rs11584200	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	159828128	rs2494504	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	159828746	rs2501337	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	159832425	rs2494507	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr1	159842088	rs2494518	T	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	159842103	rs11265289	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.41;ReadPosRankSum=-1.860;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	159842691	rs4460634	C	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr1	159854251	rs16842789	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr1	159854392	rs2501325	C	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	159858290	rs3795334	T	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.186;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	159860488	rs3820100	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=-1.550;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	159890459	rs11265297	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr1	159897126	rs13052	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.523;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr1	159897132	rs2153209	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-2.081;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	159897327	rs2153208	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr1	159897681	rs142211405	TAA	T,TA	938.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.34;MQRankSum=1.136;QD=12.35;ReadPosRankSum=-0.039;SOR=0.779;set=HC	GT:AD:AF:DP	1/2:12,24,40:0.32,0.53:76
chr1	159897754	rs80070763	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	159898913	rs7543462	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr1	159899602	.	G	T	2686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.183;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:123,135:0.52:258
chr1	159902520	rs75376900	G	C	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=-0.496;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:36,45:0.56:81
chr1	159902526	rs3827531	T	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=-0.753;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr1	159904539	rs35702833	A	G	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:86,124:0.59:210
chr1	159906041	rs114747610	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr1	159906849	rs10797055	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	159922175	rs34884993	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:111,97:0.47:208
chr1	159922369	rs2840583	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr1	159923111	rs2789417	T	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.365;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr1	160057670	rs73023672	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	160063531	rs35740609	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=1405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.811;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:1183,203:0.15:1386
chr1	160085868	rs2854244	A	C	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:9,76:0.89:85
chr1	160090674	rs2854246	T	C	7530.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	160093222	rs2820581	C	T	24964.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	1/1:2,950:1.00:952
chr1	160093911	rs2820582	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	160093927	rs2854248	T	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.137;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:99,17:0.15:116
chr1	160093942	rs17846707	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:12,81:0.87:93
chr1	160094343	rs1023420	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.809;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	160095127	rs7548116	T	A	4038.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:20,152:0.88:172
chr1	160097666	rs6695366	G	A	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	160098543	rs1063125	G	A	30357.77	.	AC=1;AF=0.500;AN=2;DB;DP=1571;set=Intersection	GT:AD:AF:DP	0/1:231,1326:0.85:1557
chr1	160098927	rs5778151	A	AG	3518.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	160100425	rs115534398	C	T	6181.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:41,264:0.87:305
chr1	160104449	rs16831402	A	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.272;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-2.092;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:130,33:0.20:163
chr1	160104950	rs61734529	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=1655;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.813;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:1433,215:0.13:1648
chr1	160105543	rs59070876	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.493;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:167,36:0.18:203
chr1	160105582	rs61435997	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.891;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:401,73:0.15:474
chr1	160106011	rs139806083	C	T	24669.77	.	AC=1;AF=0.500;AN=2;DB;DP=1259;set=Intersection	GT:AD:AF:DP	0/1:167,1071:0.87:1238
chr1	160106548	rs116629683	C	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-1.084;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:1075,157:0.13:1232
chr1	160109408	rs56077630	A	AC	1168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.150;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:618,96:0.13:714
chr1	160109636	rs17846717	C	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.580;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:863,138:0.14:1001
chr1	160109656	rs17846718	G	C	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=1180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.156;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:1001,163:0.14:1164
chr1	160109788	rs41288127	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.364;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:496,87:0.15:583
chr1	160109835	rs55884181	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.456;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:187,41:0.18:228
chr1	160110916	rs142189936	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-1.123;QD=1.75;ReadPosRankSum=0.206;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:76,10:0.12:86
chr1	160110932	rs116347119	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.190;QD=1.43;ReadPosRankSum=-0.368;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:81,10:0.11:91
chr1	160110941	rs115459521	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.481;QD=0.63;ReadPosRankSum=0.037;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:79,8:0.09:87
chr1	160124875	rs6427504	G	A	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	160125871	rs61734683	G	A	9697.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:68,430:0.86:498
chr1	160128994	rs10908764	C	T	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr1	160137300	rs4656889	A	C	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	160141196	rs625549	C	T	15076.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr1	160141268	rs12058214	T	C	13846.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	160141286	rs625129	C	G	12910.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr1	160141532	rs61734682	C	A	10310.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:81,464:0.85:545
chr1	160141636	rs1891265	C	T	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	160147502	rs731852	T	G	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	160151345	.	CAA	C	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.760;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	160151450	rs7519748	T	C	13252.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr1	160151624	rs36097870	G	GC	73745.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=2903;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.084;QD=25.84;ReadPosRankSum=-1.820;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:2,2852:1.00:2854
chr1	160163446	rs3747621	C	T	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.63;ReadPosRankSum=1.152;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:7,39:0.85:46
chr1	160163449	rs3747622	G	C	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.52;ReadPosRankSum=0.609;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:7,44:0.86:51
chr1	160163591	rs34489853	A	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.360;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:410,69:0.14:479
chr1	160164668	rs1186693	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	160165116	rs114473633	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.227;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:382,62:0.14:444
chr1	160165451	rs10908769	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=9.631;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=-0.969;QD=3.18;ReadPosRankSum=-0.112;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	160165572	rs60043899	T	A	4800.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:43,200:0.82:243
chr1	160169473	rs959166	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	160178356	rs667306	A	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	160232929	rs61480108	AT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.686;QD=0.89;ReadPosRankSum=-0.269;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr1	160233265	rs11455653	C	CA	209.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.712;QD=6.99;ReadPosRankSum=0.546;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr1	160233301	rs111774998	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.622;QD=3.29;ReadPosRankSum=-0.667;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	160233345	rs6688586	C	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=0.000;QD=16.94;ReadPosRankSum=-1.508;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	160246989	rs71846573	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-2.504;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr1	160247185	rs10594	G	C	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	160251792	rs2795067	A	G	13152.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,505:1.00:506
chr1	160253856	rs114091045	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.147;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:296,56:0.16:352
chr1	160260233	rs2298104	T	C	4162.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.912;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=-1.268;SOR=0.682;set=HC	GT:AD:AF:DP	1/1:19,168:0.90:187
chr1	160263124	rs1317944	C	T	18593.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr1	160265515	rs3789042	T	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	160268834	.	GA	G	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DP=474;ExcessHet=3.0103;FS=5.582;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.084;QD=0.50;ReadPosRankSum=1.539;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:339,71:0.17:410
chr1	160275434	rs2066320	A	G	11679.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	160302444	rs4656897	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	160303416	rs1802778	G	A	20968.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,826:1.00:826
chr1	160309664	rs1886419	T	G	11638.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:2,450:1.00:452
chr1	160313330	rs3737794	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-2.762;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:131,22:0.14:153
chr1	160313733	rs1886417	C	A	4028.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=4.574;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.452;QD=21.90;ReadPosRankSum=1.528;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:11,173:0.94:184
chr1	160313744	rs35301624	GT	G	309.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.447;QD=4.56;ReadPosRankSum=-0.566;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:29,39:0.57:68
chr1	160318940	rs6669689	A	G	8044.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	160320116	rs57114994	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.484;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:134,21:0.14:155
chr1	160321065	rs12239747	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-1.904;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:472,86:0.15:558
chr1	160321180	rs2274185	C	G	6610.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:43,289:0.87:332
chr1	160325921	rs45503695	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr1	160327098	rs58164520	T	C	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,5:0.16:31
chr1	160393905	rs12086448	A	G	18826.77	.	AC=1;AF=0.500;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	0/1:124,811:0.87:935
chr1	160394173	rs12087593	A	G	7421.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:60,305:0.84:365
chr1	160456569	rs1249552	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=0.101;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:124,17:0.12:141
chr1	160458782	rs3795327	A	G	10414.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:113,489:0.81:602
chr1	160519812	rs3832278	C	CA	6274.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:35,154:0.81:189
chr1	160519815	rs58960001	C	CT	6274.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:34,151:0.82:185
chr1	160580015	rs1061217	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.007;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:235,56:0.19:291
chr1	160582200	rs200238058	T	TA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.744;QD=0.89;ReadPosRankSum=-0.137;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr1	160585554	rs149160	C	G	17478.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:1,677:1.00:678
chr1	160585706	rs151607	C	T	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	160589456	rs113367426	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:21,155:0.88:176
chr1	160654974	rs35918317	A	G	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:26,168:0.87:194
chr1	160681653	rs57782077	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=9.795;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.316;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	160717872	rs527733	T	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	160719757	rs35325048	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.260;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:255,49:0.16:304
chr1	160722064	rs527342	A	G	876.78	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr1	160765806	rs111919549	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	160788131	rs3817407	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	160789196	rs537540	A	C	8492.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr1	160793442	rs474131	A	G	17772.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:112,772:0.87:884
chr1	160793560	rs509749	A	G	14241.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr1	160793962	rs506081	G	C	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:25,126:0.83:151
chr1	160797323	rs577453	T	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr1	160797350	rs12060017	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:9,80:0.90:89
chr1	160797514	rs576334	C	G	8685.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:104,399:0.79:503
chr1	160797684	rs574610	A	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,71:0.76:93
chr1	160808668	rs10158850	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr1	160811488	rs34846692	T	C	7496.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:54,324:0.86:378
chr1	160832212	rs11265500	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	160832528	rs16832486	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:25,132:0.84:157
chr1	160849030	rs3766358	T	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.390;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:89,16:0.15:105
chr1	160849082	rs3820094	A	G	7435.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	160850280	rs4656957	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	160850936	rs2236515	T	C	54609.77	.	AC=2;AF=1.00;AN=2;DB;DP=2113;set=Intersection	GT:AD:AF:DP	1/1:2,2099:1.00:2101
chr1	160851055	rs61734482	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.898;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:587,84:0.13:671
chr1	160851594	rs56380748	GAAAAAAA	G,GAAAAAAAAAA	525.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.706;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.516;QD=22.86;ReadPosRankSum=-0.967;SOR=1.617;set=HC	GT:AD:AF:DP	1/2:3,10,10:0.43,0.43:23
chr1	160851619	rs10908808	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=8.525;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.572;QD=7.87;ReadPosRankSum=1.851;SOR=2.012;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr1	160851826	rs2274907	A	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-3.157;QD=0.84;ReadPosRankSum=-1.097;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:377,61:0.14:438
chr1	160853379	rs11265509	A	T	8695.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:59,384:0.87:443
chr1	160854526	rs2297559	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,31:0.89:35
chr1	160854620	rs35779394	T	C	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:47,226:0.83:273
chr1	160854698	rs2297560	C	T	29538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.79;ReadPosRankSum=-2.733;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:121,728:0.86:849
chr1	160854703	rs74315633	T	C	29921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.00;ReadPosRankSum=-1.771;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:130,750:0.85:880
chr1	160854749	rs77824633	T	C	17977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=3.352;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:146,804:0.85:950
chr1	160920813	rs790059	A	G	30763.77	.	AC=2;AF=1.00;AN=2;DB;DP=1184;set=Intersection	GT:AD:AF:DP	1/1:0,1175:1.00:1175
chr1	160969008	rs3831190	T	TG	6092.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	160969585	rs790056	C	T	35553.77	.	AC=2;AF=1.00;AN=2;DB;DP=1393;set=Intersection	GT:AD:AF:DP	1/1:0,1368:1.00:1368
chr1	160971146	rs790055	A	G	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	160990875	rs28365980	TC	CA	40776.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=1592;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=26.02;ReadPosRankSum=-0.248;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:2,1565:1.00:1567
chr1	160990878	rs28365978	C	T	69869.77	.	AC=2;AF=1.00;AN=2;DB;DP=1568;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.16;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,1547:1.00:1547
chr1	161008572	rs3766383	C	A	44120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=1720;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=-0.529;SOR=0.524;set=HC	GT:AD:AF:DP	1/1:3,1682:1.00:1685
chr1	161008803	rs3766382	G	T	26534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=1.631;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:1,980:1.00:981
chr1	161010356	rs201864171	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr1	161010774	rs2516841	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	161011716	rs2774276	G	C	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	161011736	rs144100508	GGA	G	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.483;QD=1.52;ReadPosRankSum=-2.601;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:109,22:0.17:131
chr1	161012760	rs2073653	T	C	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,349:1.00:350
chr1	161022380	rs4396136	G	A	14658.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	161023252	.	TTCTCTCTCTCTCTCTC	T	685	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=0.9984;HP=1;HapScore=1;MGOF=19;MMLQ=27;MQ=60.0;NF=0;NR=27;PP=685;QD=25.4814814815;SC=AAATACCTTATTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=36;TCF=1;TCR=35;TR=27;WE=161023277;WS=161023242;set=Platypus	GT:AD:AF:DP	1/1:9,27:0.75:36
chr1	161023279	.	TC	T	2769.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.619;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.14;ReadPosRankSum=2.055;SOR=2.024;set=HC	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	161023281	.	TCTCTCTCTCTCTCTC	T	1751.75	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.831;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=2.406;SOR=1.291;set=HC	GT:AD:AF:DP	1/1:6,61:0.91:67
chr1	161026079	rs7516231	A	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	161030059	rs59790446	C	CA	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.715;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr1	161043136	rs73019796	C	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=1847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=2.703;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:1592,225:0.12:1817
chr1	161043735	rs4656285	A	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	161043764	rs4656978	G	A	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161047125	rs60601836	CTATA	C	1513.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	161049358	rs3820097	G	A	30231.77	.	AC=2;AF=1.00;AN=2;DB;DP=1189;set=Intersection	GT:AD:AF:DP	1/1:0,1165:1.00:1165
chr1	161089752	rs79077192	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:4,60:0.94:64
chr1	161162173	rs7512012	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	161163037	rs4233367	T	C	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	161163633	rs3813622	C	T	31808.77	.	AC=2;AF=1.00;AN=2;DB;DP=1258;set=Intersection	GT:AD:AF:DP	1/1:0,1224:1.00:1224
chr1	161167698	rs4589131	T	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	161168004	rs33941127	C	T	33120.77	.	AC=2;AF=1.00;AN=2;DB;DP=1269;set=Intersection	GT:AD:AF:DP	1/1:1,1228:1.00:1229
chr1	161176137	rs4656993	A	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	161184059	rs10629771	C	CTG,CTGTG	1891.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=184;set=Intersection	GT:AF:DP	1/2:0.25,0.62:99
chr1	161185058	rs2070901	G	T	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	161187665	rs2070902	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	161192845	rs72161246	CCACACACA	C,CCA	19409.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=883;set=Intersection	GT:AF:DP	1/2:0.25,0.74:505
chr1	161197244	rs4233368	C	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	161200487	rs4073054	C	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	161204906	rs3123553	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	161205046	.	G	GTTTC	183.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=30.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	161208254	.	AAG	A	816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.102;QD=2.95;ReadPosRankSum=3.156;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:217,60:0.22:277
chr1	161253657	rs4255401	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	161253684	rs66526557	AT	A	365.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	161276434	rs6674383	A	G	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	161326722	rs199612101	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.253;QD=0.24;ReadPosRankSum=-0.333;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:164,34:0.17:198
chr1	161332070	rs114933925	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:12,57:0.83:69
chr1	161332091	rs34744926	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.263;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr1	161495477	rs72633678	A	T	20812.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:158,889:0.85:1047
chr1	161495885	rs404508	T	C	23164.77	.	AC=1;AF=0.500;AN=2;DB;DP=1176;set=Intersection	GT:AD:AF:DP	0/1:133,1033:0.89:1166
chr1	161514542	rs396991	A	C	7541.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:75,332:0.82:407
chr1	161518159	rs200225944	C	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.479;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=44.24;MQRankSum=0.572;QD=6.60;ReadPosRankSum=-3.080;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:85,36:0.30:121
chr1	161518336	rs77144485	C	T	5904.77	.	AC=1;AF=0.500;AN=2;DB;DP=1607;set=Intersection	GT:AD:AF:DP	0/1:1191,404:0.25:1595
chr1	161559327	rs3933769	A	G	16116.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:1,622:1.00:623
chr1	161561236	rs143998157	C	T	8530.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:134,373:0.74:507
chr1	161561287	rs151302833	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.77;QD=28.53;SOR=1.753;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	161565324	rs61801822	C	T	18156.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:5,720:0.99:725
chr1	161565479	rs111504845	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=1.575;QD=0.27;ReadPosRankSum=-0.992;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:705,100:0.12:805
chr1	161576227	rs145679054	C	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.86;QD=27.72;SOR=2.998;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	161576785	rs139391744	C	T	10153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=48.45;MQRankSum=-3.075;QD=20.43;ReadPosRankSum=-0.186;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:61,436:0.88:497
chr1	161577238	.	A	G	6670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.920;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=48.75;MQRankSum=-0.705;QD=19.11;ReadPosRankSum=2.636;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:82,267:0.77:349
chr1	161577446	rs144714840	C	A	14605.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:113,631:0.85:744
chr1	161594226	rs61803008	C	T	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	161594246	rs61803009	G	T	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	161594525	rs61803010	GT	CG	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	161596032	rs114169903	T	C	14758.77	.	AC=1;AF=0.500;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	0/1:109,643:0.86:752
chr1	161600995	rs34085961	C	T	19720.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr1	161601118	rs61803026	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	161601133	rs61803027	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	161641384	rs6665610	G	A	5523.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=46.50;MQRankSum=-0.574;QD=21.33;ReadPosRankSum=-1.397;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:29,230:0.89:259
chr1	161643025	rs145835719	C	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.84;QD=28.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	161643067	rs199544489	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=-1.954;QD=8.15;ReadPosRankSum=1.100;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	161643371	rs58388741	C	T	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=50.63;MQRankSum=-8.157;QD=14.50;ReadPosRankSum=1.177;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:32,63:0.66:95
chr1	161643663	rs112422693	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.20;QD=27.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	161645052	rs28651835	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr1	161645058	rs148534844	T	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=48.28;MQRankSum=0.736;QD=2.04;ReadPosRankSum=1.079;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr1	161645259	rs1674759	T	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	161681661	rs1105238	C	G	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	161681780	rs2275603	A	G	17028.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:1,648:1.00:649
chr1	161695639	rs7520519	G	T	13622.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	161697072	rs72704099	G	C	16179.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr1	161721351	rs7540096	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	161722204	rs1063179	C	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	161722383	rs189376979	C	G	462.22	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr1	161722779	rs35439833	C	CAAA	3210.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.331;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.268;QD=25.08;ReadPosRankSum=1.410;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:3,125:0.98:128
chr1	161736035	rs2298019	A	G	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	161790688	.	TGA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr1	161822959	rs2340717	C	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	161829973	.	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.077;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:155,35:0.18:190
chr1	161928327	rs9482	A	G	13310.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr1	161953400	rs12039519	G	A	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:9,142:0.94:151
chr1	161967681	rs2499836	A	G	21204.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:5,828:0.99:833
chr1	161976234	rs12022536	A	G	7118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.32;ReadPosRankSum=-1.682;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:77,334:0.81:411
chr1	161976272	rs34863451	G	GA	4947.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.593;QD=12.65;ReadPosRankSum=0.128;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:99,292:0.75:391
chr1	161987141	rs78719065	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=0.230;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:390,55:0.12:445
chr1	161993192	rs12130792	T	C	23134.77	.	AC=2;AF=1.00;AN=2;DB;DP=1158;set=Intersection	GT:AD:AF:DP	1/1:120,1018:0.89:1138
chr1	162324996	rs61751200	C	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=6.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-1.045;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:112,33:0.23:145
chr1	162335424	rs1964052	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr1	162344390	rs164159	A	G	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	162345091	rs164181	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:19,59:0.76:78
chr1	162348662	rs164188	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	162352819	rs1123005	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	162367235	rs164124	G	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr1	162470961	rs5778280	A	AT	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.13;ReadPosRankSum=1.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	162473529	rs12082831	T	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr1	162560360	.	TTC	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.494;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:81,13:0.14:94
chr1	162722846	rs1632311	C	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	162731256	rs144350332	A	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr1	162737116	rs2298258	C	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	162740327	rs1780003	T	C	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	162742180	rs1704762	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	162743418	rs1355287	G	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	162748588	rs907074	C	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	162754244	rs61812969	T	G	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=29.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	162760554	rs71519246	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.33;QD=26.41;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	162765475	rs2684884	G	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.04;QD=24.99;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	162822771	rs2684878	A	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	162825258	rs12036026	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	163038613	rs7515900	C	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	163038853	rs10917671	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	163137886	.	G	GA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=2.028;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	163137907	rs16850057	T	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	163187263	rs2814368	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	163298768	.	TA	T	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.138;QD=2.19;ReadPosRankSum=-1.724;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr1	163309302	rs2999852	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:38,117:0.75:155
chr1	164532325	rs4657364	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.409;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr1	164559536	rs1780335	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	164789444	rs1538488	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	165173216	rs1354509	A	G	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	165175374	rs4656435	G	A	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	165179874	rs6703000	C	A	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:37,382:0.91:419
chr1	165180089	rs1532815	T	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	165218802	rs35943978	A	G	47539.77	.	AC=2;AF=1.00;AN=2;DB;DP=2230;set=Intersection	GT:AD:AF:DP	1/1:195,2013:0.91:2208
chr1	165370475	rs10918169	G	C	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	165377389	rs283692	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	165377552	rs2134095	G	A	24569.77	.	AC=2;AF=1.00;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	1/1:2,960:1.00:962
chr1	165378729	rs66800417	TACAC	T,TAC	9980.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=2.811;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=-0.390;QD=25.20;ReadPosRankSum=-0.829;SOR=1.082;set=HC	GT:AD:AF:DP	1/2:26,91,279:0.23,0.70:396
chr1	165378733	rs12406497	C	T	6087.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:123,276:0.69:399
chr1	165378992	rs10918172	C	T	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	165386567	rs2281986	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr1	165414267	rs57637440	C	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:12,75:0.86:87
chr1	165513439	rs285446	A	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:6,91:0.94:97
chr1	165513456	rs285445	A	T	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=41.49;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	165513463	rs285444	C	G	4125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.237;QD=36.19;ReadPosRankSum=0.794;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,110:0.96:114
chr1	165513698	.	C	G	21551.77	.	AC=2;AF=1.00;AN=2;DP=1037;set=Intersection	GT:AD:AF:DP	1/1:85,926:0.92:1011
chr1	165601466	rs9333378	G	A	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:22,311:0.93:333
chr1	165621129	.	CA	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.820;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr1	165630475	rs7544840	C	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	165630495	rs7511691	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr1	165630698	rs6667681	A	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:18,152:0.89:170
chr1	165634425	rs3820362	C	G	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:21,244:0.92:265
chr1	165636749	rs2176151	A	G	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:18,197:0.92:215
chr1	165648559	rs4646897	T	G	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:8,113:0.93:121
chr1	165648886	rs4646896	G	A	5377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.82;ReadPosRankSum=1.201;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:17,142:0.89:159
chr1	165648894	rs4646895	C	G	4748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.30;ReadPosRankSum=-0.067;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:11,113:0.91:124
chr1	165697497	rs57581252	C	CT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=3.356;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr1	165712555	.	G	GA	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.332;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:167,62:0.27:229
chr1	165727023	rs149391688	C	T	958.98	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr1	165737704	rs2790053	C	G	26797.77	.	AC=2;AF=1.00;AN=2;DB;DP=1359;set=Intersection	GT:AD:AF:DP	1/1:139,1189:0.90:1328
chr1	165738054	rs62622803	A	G	15990.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:74,696:0.90:770
chr1	165859630	rs477033	C	G	17756.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr1	166029970	rs4353067	T	C	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	166124134	rs896402	A	G	30419.77	.	AC=2;AF=1.00;AN=2;DB;DP=1179;set=Intersection	GT:AD:AF:DP	1/1:0,1172:1.00:1172
chr1	166591043	rs530513	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	166593887	rs73023617	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:122,43:0.26:165
chr1	166593988	rs73023618	A	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.259;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:108,49:0.31:157
chr1	166826773	rs6675153	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	166827674	rs6691431	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	166831404	rs2075947	A	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	166831703	rs35181816	C	CA	364.82	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr1	166833199	rs2272793	C	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:46,62:0.57:108
chr1	166944273	rs67253020	TCACA	T	179.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	166958601	rs2296837	T	C	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:163,101:0.38:264
chr1	166961857	rs7511933	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	166963234	rs3736988	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	166974420	rs1041238	T	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr1	167051473	rs139952207	AAC	A	582.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	167059336	rs2281964	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	167059462	rs2281963	G	C	9818.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr1	167059575	rs28384507	G	T	7986.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	167082869	rs12122365	G	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	167083057	rs16858470	G	T	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:132,123:0.48:255
chr1	167095163	rs267745	G	C	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	167096931	rs267746	A	C	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	167097945	rs267747	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	167307350	rs113980889	GCCTGCCTCT	G	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr1	167353258	rs35617253	AT	A	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.248;QD=10.98;ReadPosRankSum=-1.677;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr1	167365409	rs12758211	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	167365713	rs73026285	T	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr1	167382374	rs10753757	A	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr1	167382399	rs67647055	AGTGT	A	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	167403504	rs952962	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	167404078	rs3108156	G	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	167407858	rs33937946	G	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr1	167515272	rs7513428	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	167653002	rs56169660	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr1	167666172	rs12093287	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	167666218	rs12066500	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr1	167741757	rs78492861	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:85,65:0.43:150
chr1	167745537	rs78469322	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr1	167778843	rs3213588	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	167805439	rs7550383	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr1	167806642	rs35986349	C	G	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-2.150;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:80,49:0.38:129
chr1	167806647	rs1034463	T	A	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.90;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	167806696	rs1034464	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	167806714	rs1034465	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	167814733	rs73039577	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.173;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	167817639	rs203795	A	G	3512.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.042;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.041;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=-0.509;SOR=0.268;set=HC	GT:AD:AF:DP	1/1:1,140:0.99:141
chr1	167823512	rs3738236	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	167825485	rs2071921	T	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	167830006	rs7518237	G	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	167839420	rs74120520	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	167844223	rs192929012	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.08;ReadPosRankSum=-0.303;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	167844553	rs203826	C	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.26;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	167844553	.	CGGGTCG	AGGGTCA,AGGGTCG	193	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=29;MMLQ=27;MQ=60.0;NF=1,3;NR=4,16;PP=109,193;QD=32.4935749724;SC=CCCTGACTCACGGGTCGCAAA;SbPval=0.57;Source=Platypus;TC=19;TCF=3;TCR=16;TR=5,19;WE=167844567;WS=167844543;set=Platypus	GT:AF:DP	0/1:0.26:19
chr1	167844559	rs74120523	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-2.895;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	167844582	rs203827	C	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	167847955	rs203840	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	167849327	rs203848	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	167849414	rs203849	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	167849701	rs203850	G	A	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	167849887	rs115003866	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	167863008	rs113505249	G	GT	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.478;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:25,45:0.64:70
chr1	167865692	rs113372884	A	AGTAG	1425.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr1	167865871	rs16859886	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr1	167870807	rs151300700	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	167871120	rs111252817	C	CTT	1771.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:89,55:0.38:144
chr1	167871297	.	G	GA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.173;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr1	167887416	rs1050037	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	167887436	rs1050036	A	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	167887642	.	C	T	24	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=25;MQ=60.0;NF=1;NR=3;PP=24;QD=14.6928031368;SC=TAATAATAGACAAATTTATGG;SbPval=0.86;Source=Platypus;TC=10;TCF=4;TCR=6;TR=4;WE=167887650;WS=167887632;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	167890018	rs141169447	CA	C	66.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	167893759	rs9618	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	167906239	rs203788	A	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	167921190	rs73024140	G	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.043;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	167962378	rs114673055	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	167971979	rs436256	G	T	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	167971980	rs428694	C	G	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	167985326	rs3831959	TG	T	259.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	167988653	rs202255	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	167992344	rs201541	T	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	168012455	rs41271645	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	168014532	rs417427	TG	GT	335.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	168034763	rs370952	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	168035104	rs380095	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	168054273	rs1051426	A	G	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	168056724	rs275143	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr1	168059866	rs275149	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:115,79:0.41:194
chr1	168073601	rs2294817	C	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	168074145	rs6427119	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr1	168106712	rs146973452	T	C	1727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-1.290;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:76,84:0.53:160
chr1	168106716	rs6664903	T	C	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.85;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	168165767	rs35234155	CT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.596;QD=10.03;ReadPosRankSum=2.668;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	168200730	rs113808778	AT	A	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr1	168200733	rs11588504	T	C	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.218;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr1	168206118	rs55947108	GTTTAA	G	701.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr1	168208308	rs12142742	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	168262289	rs7543224	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.21;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	168262289	.	AAGCTTGGGAC	GAGCTTGGGAC,GAGCTTGGGAT	522	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=37,14;NR=15,6;PP=522,297;QD=10.7071387028;SC=GGGTGGTGCTAAGCTTGGGAC;SbPval=0.54;Source=Platypus;TC=52;TCF=37;TCR=15;TR=52,20;WE=168262307;WS=168262279;set=Platypus	GT:AF:DP	0/1:1.00:52
chr1	168262299	rs7520743	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-1.413;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr1	168262522	.	AGTGTGTGT	A,AGT	676	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=20;MQ=59.81;NF=0,0;NR=37,37;PP=648,676;QD=17.5945945946;SC=AGGAGGTAAGAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=50;TCF=0;TCR=50;TR=37,37;WE=168262545;WS=168262512;set=Platypus	GT:AF:DP	0/1:0.74:50
chr1	168262526	rs199592560	TG	T	3019.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.477;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.53;ReadPosRankSum=2.039;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:3,82:0.96:85
chr1	168262528	.	TGTGTGTG	T,TTG	2375.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=7.153;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.12;ReadPosRankSum=2.392;SOR=2.040;set=HC	GT:AD:AF:DP	1/2:3,37,24:0.58,0.38:64
chr1	168269559	rs141872575	C	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr1	168274201	rs4656579	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	168278264	rs1883148	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	168282261	rs3885717	T	A	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.70;SOR=1.661;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	168282261	.	TTGCAC	ATGCAC,ATGCAG	1031	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=27;MQ=60.0;NF=16,1;NR=62,16;PP=1031,257;QD=13.6637334942;SC=AGGAGCCTCTTTGCACAGCGA;SbPval=0.53;Source=Platypus;TC=78;TCF=16;TCR=62;TR=78,17;WE=168282274;WS=168282251;set=Platypus	GT:AF:DP	0/1:1.00:78
chr1	168282266	rs143627386	C	G	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.976;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:79,48:0.38:127
chr1	168344829	rs78825966	C	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.633;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	168510122	rs470733	T	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	168511155	rs76400946	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	168513129	rs3820405	C	T	1818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=1.366;QD=8.92;ReadPosRankSum=-1.082;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:107,97:0.48:204
chr1	168513243	rs1933114	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr1	168549265	rs371121214	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr1	168550338	rs41271659	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:129,36:0.22:165
chr1	168665747	rs78760104	C	CT	10885.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	168665974	rs524705	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	168670134	.	TGTGTGTGTGTGG	T	190.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.903;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	168670136	.	TGTGTGTGTGG	T	296.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.036;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	169080837	rs1200138	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr1	169094100	rs968304	T	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	169099061	rs1200157	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=-0.524;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	169101935	rs1138486	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr1	169102223	rs61803315	G	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	169138027	rs10919082	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr1	169138318	rs4656657	T	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	169138449	rs77423712	G	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	169138598	rs75422514	A	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	169138815	rs77025785	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr1	169138844	rs78009500	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr1	169138868	rs3737681	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	169159866	rs7526721	G	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=0.874;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	169200111	rs10800420	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	169216122	rs145904251	TAAC	T	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	169216412	rs2040445	C	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	169256524	rs7544446	T	C	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:87,83:0.49:170
chr1	169268023	rs57776592	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	169272299	rs10919130	A	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-2.052;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr1	169272451	rs10800427	A	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	169272453	rs10800428	G	A	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	169279196	rs34054662	T	TA	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	169293721	rs1140523	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,79:0.54:145
chr1	169345868	rs1028180	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:85,54:0.39:139
chr1	169346260	rs78043796	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr1	169349608	rs3830533	C	CTA	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	169351596	rs3905328	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	169356427	rs116192263	A	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr1	169366516	rs2272801	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr1	169390815	.	C	A	1617.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr1	169391154	rs3820059	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	169394226	rs10919168	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	169435027	rs2678166	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	169437890	rs61049753	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr1	169455027	rs181612338	C	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	169455435	rs2056926	G	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr1	169498834	rs6009	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.175;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr1	169511903	rs6031	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr1	169519049	rs6025	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	169519112	rs6020	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:84,74:0.47:158
chr1	169519765	rs13306331	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr1	169525766	rs2239853	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	169528580	rs6012	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	169529826	rs6022	C	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	169529973	rs6029	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	169541513	rs6019	C	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	169551549	rs56901113	T	TA	34.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	169562904	rs6128	C	T	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	169564130	rs1569471	T	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	169565346	rs6133	C	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	169565393	rs3917811	C	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	169566308	rs6132	G	A	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	169566313	rs6127	C	T	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	169566326	rs6135	G	A	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	169572545	rs60786797	CTGTGTGTGTGTGTGTGTG	CTGTGTGTGTGTGTGTGTGTGTGTG,C	77.37	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	1/1:1.00:3
chr1	169580885	rs6131	C	T	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	169580972	rs3917730	C	CAT	1396.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr1	169599254	rs732314	T	C	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	169660781	rs12938	A	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr1	169660939	rs4987382	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr1	169665551	rs4987358	G	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-2.197;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr1	169665632	rs2223286	T	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	169673874	rs2229568	C	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr1	169676486	rs1131498	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr1	169698825	rs1534904	T	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	169698921	rs2076059	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	169699819	rs3917419	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	169761863	rs16862686	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr1	169764083	rs16862693	T	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	169764164	rs78085829	G	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr1	169768033	rs6680938	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	169768080	rs6668114	C	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	169775142	rs16862701	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.619;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	169795214	rs57068023	CT	C	400.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	169795276	rs6682137	A	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	169796197	rs142988055	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr1	169819526	.	A	AT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.692;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr1	169819605	rs6664099	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	169823660	rs1062976	C	T	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:77,103:0.57:180
chr1	169823718	rs4656197	T	C	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	169831690	rs5778632	CTCTT	C	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	169831993	rs7525259	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	169835950	rs12133843	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	169838278	rs17603022	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr1	169839595	rs10919260	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	169847683	rs6683056	G	A	105.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	169890933	rs518928	A	G	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr1	169891056	rs3838393	CT	C	132.74	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	169930434	rs16862862	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr1	169941761	rs511443	A	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	169947146	.	C	CAA	179.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.84;ReadPosRankSum=0.755;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	169951748	rs638486	A	G	159.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	169951978	rs12075833	A	C	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.417;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,70:0.49:143
chr1	169952385	rs2057249	G	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	169993762	rs16862956	A	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.192;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	170001034	rs36022648	T	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=2.532;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:82,52:0.39:134
chr1	170043555	rs80309878	C	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:131,98:0.43:229
chr1	170129937	rs193005588	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	170135669	rs6427234	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	170135760	rs6427235	T	C	3253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.86;ReadPosRankSum=-0.772;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:71,85:0.54:156
chr1	170135765	rs6669514	T	C	3203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.67;ReadPosRankSum=-0.416;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:73,82:0.53:155
chr1	170501385	rs7531125	A	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr1	170521376	rs913257	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr1	170633186	.	AT	A	75	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=12;HapScore=2;MGOF=41;MMLQ=25;MQ=59.48;NF=2;NR=3;PP=75;QD=16.2;SC=CTCTTTTCCAATTTTTTTTTT;SbPval=0.65;Source=Platypus;TC=5;TCF=2;TCR=3;TR=5;WE=170633194;WS=170633177;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	170633229	.	C	CCTCTCTCTCTCTCTCT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.30;ReadPosRankSum=0.282;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr1	170633322	rs77911930	C	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr1	170916646	rs4656817	G	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr1	170927570	rs374865486	CT	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.996;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	170927722	rs199716584	TGC	T	1143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=0.331;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:40,31:0.44:71
chr1	170927726	.	T	TA	1143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.344;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr1	170927729	.	A	AGTG	1149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.377;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr1	170928516	.	AAAAT	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.64;ReadPosRankSum=2.670;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	170959029	rs16863922	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr1	170959088	rs28634500	C	T	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:129,107:0.45:236
chr1	170965681	rs9427213	T	C	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:101,146:0.59:247
chr1	170985408	rs16863939	C	T	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.210;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:125,119:0.49:244
chr1	170985569	rs7882102	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=0.976;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	171033105	rs73040302	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	171061990	rs2064074	A	G	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	171076888	rs12072582	G	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:119,87:0.42:206
chr1	171076966	rs2266782	G	A	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:92,125:0.58:217
chr1	171077198	rs1920149	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	171077372	rs2066534	C	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr1	171083174	rs909530	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:100,114:0.53:214
chr1	171083537	rs909531	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	171085314	rs2066528	A	AT	611.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr1	171112490	rs1736565	C	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	171130598	rs145126383	CACACA	C	712.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.891;QD=22.27;ReadPosRankSum=-0.231;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	171155103	rs6657314	C	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	171168379	rs5778696	CA	C	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	171168545	rs2307492	T	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr1	171168585	rs2020861	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr1	171173242	rs7517460	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	171174691	rs7536646	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:87,74:0.46:161
chr1	171174821	rs7536745	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr1	171176879	rs6671692	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.973;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	171178090	rs6661174	T	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr1	171178152	rs2020869	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	171227216	rs10912675	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr1	171227487	rs12141555	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	171250044	rs742350	C	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr1	171251509	rs12091482	G	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	171252287	rs1126692	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-1.396;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr1	171301033	rs2294483	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=1.141;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	171303925	rs3820170	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,76:0.46:167
chr1	171311003	rs1042772	A	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr1	171486912	rs10913157	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	171491264	rs3736679	T	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.34;ReadPosRankSum=-1.141;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	171496895	rs10753126	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	171506696	rs10913197	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=-0.144;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	171509327	rs760644	G	A	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	171511039	rs1687064	C	G	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	171514731	rs235468	C	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	171514820	.	TATG	T	154	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=27;MQ=60.0;NF=0;NR=6;PP=154;QD=34.254945767;SC=TCTCAACAATTATGCAAGTAT;SbPval=1.0;Source=Platypus;TC=28;TCF=0;TCR=28;TR=6;WE=171514830;WS=171514810;set=Platypus	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	171514848	rs201782866	TTTTATTTA	T,TTTTATTTATTTATTTA	396.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/2:0,8,4:0.67,0.33:12
chr1	171519487	rs235470	A	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	171526570	rs1687057	G	A	28188.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.065;QD=26.17;ReadPosRankSum=2.220;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:2,1075:1.00:1077
chr1	171527322	rs235482	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	171535309	rs2038040	T	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.927;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	171535573	rs2038041	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr1	171546833	rs6685179	C	A	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	171548868	rs235489	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	171556165	rs235501	G	C	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	171558516	rs235503	C	T	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr1	171605605	rs61730976	C	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:125,132:0.51:257
chr1	171607702	rs2032555	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.699;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	171621098	rs113416006	C	T	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,153:0.54:284
chr1	171621275	rs61730977	T	C	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,112:0.47:237
chr1	171621713	rs12082573	A	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:66,88:0.57:154
chr1	171673621	rs7551845	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr1	171707272	rs10753179	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	171751051	rs2294719	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:64,46:0.42:110
chr1	171751236	rs2294720	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	171752798	rs2232815	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	171753039	rs2232816	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,73:0.49:148
chr1	171755170	rs2232818	G	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:94,87:0.48:181
chr1	171763522	rs909958	C	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr1	171765591	rs2232826	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,52:0.42:123
chr1	171956803	rs3736790	C	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	171957042	rs77868630	G	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	172001666	.	CTTTT	C	984.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=89;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.000;QD=61.55;ReadPosRankSum=1.068;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:4,12:0.75:16
chr1	172007376	rs41263724	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	172011059	rs3736791	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.78;ReadPosRankSum=-1.834;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	172037907	rs61510803	T	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-2.254;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	172100802	rs75896557	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	172108145	rs57417995	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	172222629	rs374567538	TCTCTC	T	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=-0.291;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	172277845	rs200321314	AT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.077;QD=4.95;ReadPosRankSum=1.335;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	172292355	rs79240969	C	CTCA	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	172308238	rs6697844	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	172356437	rs6688654	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	172387556	rs115352926	T	C	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr1	172411496	rs2230471	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	172417468	rs12074691	G	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	172417781	rs2157451	A	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	172422206	rs7532205	C	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	172434309	rs9425328	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	172434375	rs2901655	G	A	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.160;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:39,63:0.62:102
chr1	172434812	rs2901656	C	T	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.413;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:115,68:0.37:183
chr1	172437592	rs1129942	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr1	172502697	rs79939531	C	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr1	172634734	rs2639653	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	173457017	rs78495657	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	173474625	rs112776651	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	173478648	rs10737303	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	173478877	rs16846052	G	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr1	173478985	rs16846055	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=0.385;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	173486590	rs116576529	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	173490407	rs200616970	TAA	T	769.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.464;QD=20.26;ReadPosRankSum=1.676;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:8,30:0.79:38
chr1	173490616	rs146332693	CTATATA	C	278.76	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	173494176	rs6663036	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	173494210	rs6696443	C	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	173503585	rs56043618	G	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=2.515;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	173503864	rs10798285	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	173505104	rs1461021	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	173506044	rs10707072	AT	A	340.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	173516903	rs10494490	A	G	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	173517540	rs6425247	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	173523726	rs16846220	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	173552783	rs12032386	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	173556699	rs301698	G	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	173557018	rs12089398	C	T	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	173596257	rs12059066	A	T	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	173596273	rs12059068	A	G	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.74;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	173606179	rs12065988	A	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	173606207	rs12067170	T	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	173638537	rs58611776	CA	C	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:9,50:0.85:59
chr1	173721114	.	T	TGA	457.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	173722545	rs6425256	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	173725101	rs16846395	G	A	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	173735378	rs7536773	T	C	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	173735434	rs7522788	C	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:3,87:0.97:90
chr1	173735528	rs7534521	A	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=24.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	173754505	rs6692452	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	173769670	rs58529781	AAAG	A	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	173772506	rs16846420	T	G	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	173780486	rs66554404	AG	A	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	173794587	.	C	CATTATTATTATTATT	117.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	173797447	rs143246542	C	CT	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	173797459	rs9425753	C	G	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	173810239	rs6675762	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	173814224	rs12084213	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.263;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	173834332	.	T	TAA	296.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.20;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	173834356	rs9442660	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	173835501	rs9425427	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	173835758	rs1322772	C	A	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	173835919	rs13476	T	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	173839240	rs1322774	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	173839435	rs9425761	G	A	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	173842467	rs9286895	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	173854659	rs4652283	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	173855298	rs1322775	A	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	173878832	rs5878	T	C	12067.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr1	173878862	rs5877	T	C	9991.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	173879178	rs2227610	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	173881122	rs2227606	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.147;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:73,56:0.43:129
chr1	173907812	rs6703547	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	173916006	rs12066069	C	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=1.717;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	173921301	rs199536039	C	CA	446.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.795;ClippingRankSum=-0.000;DB;DP=45;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=-0.980;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr1	173947532	rs12078645	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr1	173950205	rs7530661	T	C	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	173952539	rs6686083	T	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr1	173961992	rs10912711	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr1	174188231	rs375410689	GT	G	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.856;QD=5.79;ReadPosRankSum=-1.435;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	174188285	rs2103640	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr1	174210540	rs61628461	A	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.67;ReadPosRankSum=0.412;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	174221887	rs11351373	GT	G	105	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	174274062	rs2142864	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	174274349	rs2860909	T	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	174417231	rs7516240	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	174671459	rs7543694	G	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	174927388	rs10798329	G	C	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	174952226	rs11806870	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	174959278	rs10912864	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr1	174969271	rs1046439	C	T	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr1	174977851	rs78902398	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-2.216;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	174984073	rs201408977	TC	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.090;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	174987820	rs115044231	T	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr1	175037039	rs6663050	C	T	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,58:0.54:107
chr1	175046454	rs112462550	T	TAA	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	175046477	rs74128565	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	175046488	rs2072033	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	175046789	rs2072032	A	G	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	175049405	rs61742080	C	A	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.529;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:65,60:0.48:125
chr1	175053101	rs2072030	A	T	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	175054489	rs76471061	G	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	175054548	rs1573758	C	T	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	175086461	rs6690229	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	175087677	rs6656284	G	A	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	175087683	rs149150350	A	AT	1951.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr1	175087729	rs6696455	T	C	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr1	175092674	rs2285215	C	T	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	175092707	rs10798333	C	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr1	175092840	rs2072041	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	175096179	rs56239270	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr1	175097357	rs2269652	C	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	175097822	rs61740198	C	T	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:124,106:0.46:230
chr1	175097944	rs61016389	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	175104796	rs4651324	G	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	175104814	rs60940266	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	175105038	rs76088304	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	175105880	rs2072037	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	175105942	rs4650703	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	175106186	rs116826002	T	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.300;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	175113578	rs10912897	T	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	175116252	rs4651335	C	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	175116277	rs41266092	T	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr1	175116283	rs142815211	C	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	175129924	.	C	CCTTCTTCTTCTT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=2.501;QD=14.03;ReadPosRankSum=0.218;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	175130185	rs115619463	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	175293424	rs2213635	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	175299301	rs2027867	T	C	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:98,98:0.50:196
chr1	175304971	rs10912960	C	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.498;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	175336323	rs78369705	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr1	175336530	rs6697701	T	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr1	175336619	rs6697801	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.48;ReadPosRankSum=1.068;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	175348723	rs859427	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=1.822;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	175355128	rs859436	C	G	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.131;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:72,85:0.54:157
chr1	175355391	rs859437	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	175360690	rs859444	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	175362736	rs3752517	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	175362824	rs116233955	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr1	175365663	rs859446	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	175375334	rs859400	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr1	175375683	rs859399	T	C	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr1	175375802	rs859398	T	C	9158.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr1	175916267	rs6674353	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	175937540	rs4534339	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr1	175951347	rs10798430	T	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	176012466	.	G	GA	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.623;QD=2.28;ReadPosRankSum=0.146;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	176012807	rs4233165	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.554;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	176175910	rs140755121	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr1	176176119	rs115466880	A	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=0.164;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	176671881	.	T	TTG	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.038;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	176681165	rs66731142	ATG	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.194;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	176734756	rs3737759	C	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr1	176811338	rs12089189	T	A	114.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.42;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	176833497	rs12118933	G	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:81,58:0.42:139
chr1	176837924	.	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.584;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	176845528	rs2076341	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr1	176857347	rs2072935	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.344;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	176863836	rs2281180	G	C	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-1.602;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:79,47:0.37:126
chr1	176863842	rs6680908	C	T	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-2.411;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:84,57:0.40:141
chr1	176863867	rs2228956	T	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:101,74:0.42:175
chr1	176992553	rs172917	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	176992676	rs10798496	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr1	177198998	rs3176441	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr1	177247854	rs3176443	C	G	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:115,138:0.55:253
chr1	177898799	rs623479	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	177899121	rs545608	G	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.60;ReadPosRankSum=-0.769;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	177901713	rs522367	T	C	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:195,178:0.48:373
chr1	177901741	rs684227	A	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:167,146:0.47:313
chr1	177901827	rs182855744	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,80:0.47:170
chr1	177902388	rs3813647	G	A	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:130,124:0.49:254
chr1	177902753	rs591120	G	C	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.368;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:99,89:0.47:188
chr1	177910896	rs10913466	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.22;ReadPosRankSum=-1.345;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	177913980	rs532842	T	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	177915474	rs842192	A	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr1	177923440	rs12129817	T	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr1	177929554	rs10913472	C	T	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	177929987	rs12040910	T	C	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	177930642	rs945640	G	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	177930894	rs945641	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	177933443	rs3813651	G	A	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	177933505	rs3813652	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	177934351	rs72703030	G	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr1	177935050	rs1889981	T	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	177935166	rs140757538	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr1	177935203	rs954502	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	177935275	rs1415085	A	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	178062359	rs964993	G	A	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.796;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:130,118:0.48:248
chr1	178380859	rs61736916	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:129,64:0.33:193
chr1	178408780	rs16852807	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	178408795	rs10913550	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	178421901	rs12691482	T	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	178434946	rs1397184	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	178434963	rs143274139	AAAAGAAAGAAAGAG	A	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=2.009;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	178484834	rs10798611	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr1	178484958	rs56144332	T	C	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:79,115:0.59:194
chr1	178491413	rs74129234	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	178492447	rs7527160	T	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr1	178494428	rs6664493	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	178499068	rs6675811	T	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	178514165	rs12141152	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr1	178514560	rs34632529	A	AT	8200.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	178515135	rs4650992	A	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	178646752	rs2773075	A	C	129.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	178745798	rs11323887	CT	C	670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.340;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:10,49:0.83:59
chr1	178746031	rs75184054	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	178776985	rs6690324	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	178780650	rs12131426	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	178820159	rs1544124	C	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	178854162	rs6425503	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	178854330	rs61758794	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	178858624	rs34280213	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	178858711	rs10798635	C	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	178858759	rs3753534	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	178866674	rs17674780	A	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	179019238	rs11808217	C	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.88;ReadPosRankSum=-0.987;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	179041011	rs3820163	A	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	179051300	rs2296377	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	179052006	rs2274227	G	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr1	179054692	rs912758	T	G	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr1	179057105	rs12061876	C	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr1	179057117	rs12092348	G	A	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr1	179067071	rs10913690	C	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	179080115	.	CTTT	C	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=1.234;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,39:0.85:46
chr1	179084268	rs2274229	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	179087934	rs2171959	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	179089213	rs1858551	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	179089475	rs9726961	C	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	179089491	rs9728480	A	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	179089518	rs9727252	C	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	179095895	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.729;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	179311387	.	A	ATTCCC	422.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	179312235	rs10913728	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	179312525	rs12691483	G	A	94.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.69;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	179312526	rs13306726	GT	G	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.43;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	179312752	rs10753191	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-1.094;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	179317896	rs72717515	T	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=2.057;QD=9.21;ReadPosRankSum=0.439;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	179319580	rs3753527	T	C	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:141,108:0.43:249
chr1	179319631	rs16853965	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr1	179335515	rs185668284	A	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=-0.614;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	179348646	rs141815555	T	TG	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr1	179351606	rs4625243	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.108;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	179354304	rs7541905	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	179380472	rs5779024	GT	G	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr1	179398875	rs4652383	T	A	151.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.15;ReadPosRankSum=-0.674;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr1	179401379	rs11314780	CT	C	125.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	179401526	rs7550638	C	G	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,134:0.53:251
chr1	179401559	rs7550656	C	T	2493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.134;QD=12.35;ReadPosRankSum=1.227;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:91,111:0.55:202
chr1	179401564	rs10706073	CT	C	1105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.199;QD=6.87;ReadPosRankSum=-1.229;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:75,86:0.53:161
chr1	179401599	rs7550736	C	T	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr1	179402037	rs199738366	C	CA	123.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	179414105	rs11577579	A	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr1	179418132	rs10913770	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	179418181	rs10913771	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.383;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	179452381	rs10494519	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:74,81:0.52:155
chr1	179460979	rs41267594	G	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	179461894	rs72704429	A	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	179462099	rs116180193	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr1	179462149	rs7549194	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	179494665	rs4620484	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-1.242;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	179497359	rs6698201	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	179520254	rs1410591	C	G	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	179520506	rs1410592	G	A	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	179521932	rs2274626	G	T	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:57,82:0.59:139
chr1	179526175	rs61747727	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr1	179528917	rs12401708	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=1.777;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:41,32:0.44:73
chr1	179528942	rs12401711	G	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.024;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	179544898	rs1079292	T	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	179545050	rs12406197	C	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	179561645	rs4652418	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.28;ReadPosRankSum=-0.000;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	179561683	rs4652419	A	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	179599335	rs147401101	T	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	179604864	rs4628468	C	T	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	179605058	rs4483370	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	179620253	rs6682666	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	179621310	.	A	G	602.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr1	179623429	rs16854446	A	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-0.212;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr1	179632347	.	A	C	35	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=19;MQ=60.0;NF=3;NR=0;PP=35;QD=23.2570708491;SC=AGGAAAGTCAAACTGATATAG;SbPval=1.0;Source=Platypus;TC=12;TCF=11;TCR=1;TR=3;WE=179632355;WS=179632337;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	179638333	rs147845046	T	C	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:140,109:0.44:249
chr1	179782860	rs116039137	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr1	179816017	rs79921581	C	G	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.261;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:58,45:0.44:103
chr1	179820143	rs78506845	T	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:109,128:0.54:237
chr1	179852159	rs78856676	GC	CT	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	179870628	rs74364704	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	179887125	rs627897	G	A	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	179956355	rs140510451	AAT	A	1478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=19.72;ReadPosRankSum=-2.105;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chr1	179956359	rs58749862	T	C	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-0.610;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr1	179956497	rs16855052	G	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.27;ReadPosRankSum=1.982;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	179961368	rs148001345	GA	G	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.269;QD=10.45;ReadPosRankSum=-0.455;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr1	179985156	rs16855107	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr1	179992076	rs2477117	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.11;ReadPosRankSum=-0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	179993793	rs4622030	T	C	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	180003277	rs74487535	C	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr1	180010702	rs4652461	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.47;ReadPosRankSum=-0.566;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	180034222	rs41267622	A	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr1	180047817	rs74895300	A	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	180059751	.	G	T	114.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	180067914	rs12121834	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.139;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	180067988	rs12121845	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.902;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr1	180080313	rs16855289	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr1	180124379	rs35481032	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.000;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	180135701	rs3894211	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr1	180144241	.	G	A	342.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	180144291	rs71118443	C	CA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.683;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr1	180145088	rs2298206	A	G	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	180153254	rs77315910	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	180155376	rs2298207	C	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	180155382	rs3216058	AG	A	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	180159797	rs3215795	TC	T	280.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	180165742	rs16855466	G	C	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:185,169:0.48:354
chr1	180180669	rs164980	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	180180756	rs355610	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr1	180257692	rs2254465	A	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	180283659	rs2764433	T	C	220.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	180471040	.	C	CA	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=0.105;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr1	180471054	rs12723183	C	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.188;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	180757056	rs3761904	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.394;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr1	180757117	rs34984251	G	GT	44.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	180803922	rs2271669	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	180885430	rs10732273	T	C	9813.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	180897521	rs7544551	C	T	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:287,212:0.42:499
chr1	180897569	rs3747958	C	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:253,225:0.47:478
chr1	180897792	rs35197779	ATGC	A	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	180905352	rs3795505	C	T	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:343,256:0.43:599
chr1	180905448	rs3795504	G	T	4938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.518;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:382,261:0.41:643
chr1	180913597	rs2331995	A	G	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	180933498	rs4652543	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr1	180953853	rs3747957	A	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=2.141;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:51,45:0.47:96
chr1	180991665	rs12565758	C	G	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:217,137:0.39:354
chr1	181018180	rs2236411	C	G	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:102,91:0.47:193
chr1	181022895	rs2275469	C	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	181024404	rs3747956	G	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:147,147:0.50:294
chr1	181058313	rs3747955	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	181058618	rs1416829	C	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.64;ReadPosRankSum=1.358;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	181058643	rs1361365	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	181680082	rs17743547	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.330;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:103,67:0.39:170
chr1	181684605	rs12407563	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	181686216	rs7540850	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.743;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:59,31:0.34:90
chr1	181691088	rs187694635	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,47:0.42:113
chr1	181691119	rs115701164	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr1	181706685	rs34488539	C	T	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:102,119:0.54:221
chr1	181708168	rs73045109	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	181714466	rs375841404	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=2.496;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:84,34:0.29:118
chr1	181725110	rs4652678	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	181726413	rs704330	G	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	181727030	rs12564606	A	T	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	181731667	rs149636359	T	TC	2911.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.32;MQRankSum=0.218;QD=24.47;ReadPosRankSum=-0.635;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:2,117:0.98:119
chr1	181732695	rs72735265	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	181741301	rs199930	C	T	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr1	181745580	rs199932	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	181752714	rs74489861	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	181752735	rs74342664	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	181752783	rs201160192	T	TG	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=2.190;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr1	181752923	rs36163765	AAGCTT	A	2691.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	181754314	rs579105	G	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	181754803	rs473200	C	T	3407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.197;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:139,165:0.54:304
chr1	181762760	rs75408623	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	181762972	.	G	A	951.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr1	182026813	rs12568050	G	C	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:178,197:0.53:375
chr1	182027022	rs12564283	C	T	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:96,130:0.58:226
chr1	182369078	rs6698722	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:76,94:0.55:170
chr1	182369233	rs6674281	A	G	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:166,186:0.53:352
chr1	182427355	rs2765278	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr1	182429295	rs10572829	CTG	C	896.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr1	182429728	rs266508	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr1	182441446	rs569654	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=0.849;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	182443014	rs647224	G	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,82:0.43:191
chr1	182443462	rs649437	T	C	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:107,131:0.55:238
chr1	182491107	rs607269	A	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	182501933	rs266534	C	A	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.833;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:121,108:0.47:229
chr1	182502033	rs266535	G	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr1	182509269	rs266531	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	182509598	rs76889128	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	182517642	rs10911094	C	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,110:0.63:175
chr1	182544815	rs11807829	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-0.853;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	182549019	rs533259	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	182551337	rs627928	A	C	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:103,105:0.50:208
chr1	182554557	rs486907	C	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:116,149:0.56:265
chr1	182569626	rs1144566	T	C	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	182571003	rs610367	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.307;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	182571277	rs569790	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:105,84:0.44:189
chr1	182573227	rs509476	T	C	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:5,260:0.98:265
chr1	182635936	rs2482810	A	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	182638659	rs58923277	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr1	182778188	rs113916644	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	182778367	rs971040	G	A	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	182781273	rs2225789	G	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr1	182784022	rs2275171	T	C	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:49,120:0.71:169
chr1	182784065	rs41268520	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr1	182785865	rs1128759	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr1	182787585	rs3748847	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.524;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	182787920	rs10911141	C	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr1	182787951	rs10911142	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr1	182794901	rs3831265	G	GT	549.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr1	182798924	rs1045971	G	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr1	182812584	rs6704129	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr1	182825748	rs3737219	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.224;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	182844020	rs11332	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	182846206	rs3831266	A	AT	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	182846213	rs16859797	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	182850727	rs6677840	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	182854017	rs3130492	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	182898774	rs371035141	T	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-1.109;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	182920569	rs142010218	G	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=1.267;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr1	182993025	rs10911194	C	T	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:285,164:0.37:449
chr1	183072590	rs2296288	T	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:147,108:0.42:255
chr1	183077296	rs3835273	A	AG	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	183077615	rs3765521	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.47;ReadPosRankSum=-0.108;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	183077618	rs3765522	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.40;ReadPosRankSum=1.006;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	183079509	rs2296291	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	183079853	rs6672093	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr1	183084607	rs3736888	AC	GA	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr1	183084643	rs77135055	T	C	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,86:0.53:162
chr1	183085611	rs10689020	C	CA	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	183085696	rs6424888	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr1	183085755	rs20563	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:121,103:0.46:224
chr1	183086757	rs2296292	A	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr1	183091058	rs2230157	G	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:147,121:0.45:268
chr1	183091158	rs113208467	T	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:123,138:0.53:261
chr1	183091399	rs74878016	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr1	183093875	rs20557	T	C	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=1.037;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:96,70:0.42:166
chr1	183094547	rs20558	T	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:105,101:0.49:206
chr1	183094802	rs10797850	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	183095234	rs1886501	A	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,48:0.38:125
chr1	183095477	rs2296293	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	183096634	rs1413390	G	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	183097956	rs34133998	G	GTTA	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr1	183098001	rs10797851	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	183099701	rs2296300	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr1	183100555	rs2333620	T	C	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-1.065;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:64,37:0.37:101
chr1	183100562	.	G	GT	1060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.671;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:56,30:0.35:86
chr1	183100596	rs2333619	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.033;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	183100596	.	ATT	GTG	390	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=121;MMLQ=27;MQ=59.18;NF=0;NR=13;PP=390;QD=34.1129134509;SC=GTGTGTGTGTATTGTCTTATC;SbPval=1.0;Source=Platypus;TC=31;TCF=3;TCR=28;TR=13;WE=183100606;WS=183100586;set=Platypus	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	183100598	rs4047797	T	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.428;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	183101427	rs148796825	AAAT	A	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	183101444	rs12071514	A	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.46;ReadPosRankSum=-1.540;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	183101451	rs12066735	T	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=-1.236;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	183101471	rs12061219	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	183101686	rs12095664	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr1	183104013	rs2296299	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	183104340	rs35182436	AT	A	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:6,71:0.92:77
chr1	183105399	rs2296296	C	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	183105502	rs78668666	G	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:113,106:0.48:219
chr1	183105534	rs20560	T	C	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:173,136:0.44:309
chr1	183105705	rs20561	G	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr1	183106739	rs10797854	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	183106956	rs20564	A	C	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:113,101:0.47:214
chr1	183155399	rs2276542	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	183155482	rs684527	C	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr1	183155700	rs6678888	C	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.700;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:75,30:0.29:105
chr1	183155715	rs60707856	CT	C	3531.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	183155717	rs61418038	C	A	3540.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	183155778	rs6703054	A	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	183176970	rs11480551	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.207;QD=2.37;ReadPosRankSum=1.677;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr1	183177218	rs647347	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	183184524	rs2274981	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	183184616	rs2274980	C	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	183184650	rs12065473	G	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr1	183184663	rs17481405	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr1	183184848	rs875794	T	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	183187494	rs10911285	T	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:43,77:0.64:120
chr1	183187603	rs1129723	C	T	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:122,147:0.55:269
chr1	183191144	rs2296307	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	183192304	rs1047980	T	G	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr1	183194867	rs12092752	C	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr1	183201970	rs2296303	G	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.906;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr1	183205523	rs58014409	CA	C	98.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.34;ReadPosRankSum=0.489;SOR=2.526;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr1	183206573	rs1047981	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr1	183207603	rs1925043	T	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.301;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:26,43:0.62:69
chr1	183209086	rs2477436	C	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.528;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	183212171	rs3768594	C	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	183212548	rs3768593	T	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	183221633	rs3738818	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	183263001	rs139020088	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-1.767;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:24,42:0.64:66
chr1	183441977	rs3905118	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.210;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	183486859	rs789169	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	183496658	rs2877978	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.52;ReadPosRankSum=-0.191;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	183496989	rs74129810	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	183513991	.	T	TA	752.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr1	183516100	rs699246	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	183525452	rs699244	T	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	183534945	rs35504102	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr1	183559542	.	G	A	506.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr1	183604905	rs2767305	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:59,84:0.59:143
chr1	183617266	rs17436878	C	G	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:131,108:0.45:239
chr1	183711483	rs3820689	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	183816683	rs10494570	G	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	183944444	rs2378795	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	183947757	rs3833521	G	GA	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	184006128	rs74767794	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	184006549	rs114661926	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.256;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	184020945	rs2274432	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr1	184023529	rs1046934	A	C	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,99:0.51:195
chr1	184039735	rs56239295	T	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	184567463	rs10465489	G	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=1.669;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr1	184588710	rs16823344	A	C	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.259;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:76,109:0.59:185
chr1	184662181	rs1061508	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr1	184662320	rs116142910	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr1	184663581	rs9425634	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr1	184663643	rs34236444	TA	T	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	184677464	rs3736757	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr1	184681081	rs7525074	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	184688237	rs111917956	CGT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.738;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	184688461	rs116800203	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	184695571	rs10752941	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	184706212	rs10711907	GT	G	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.795;QD=19.26;ReadPosRankSum=-0.302;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr1	184760001	rs570441	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	184763922	rs146104555	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.795;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	184765072	rs28927681	A	G	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:137,180:0.57:317
chr1	184767502	rs3737953	A	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	184772692	rs141248374	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr1	184775013	rs183973882	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr1	184777132	rs143924181	T	C	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:154,203:0.57:357
chr1	184777467	rs338566	A	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	184801065	rs487675	T	C	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=1.745;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:132,121:0.48:253
chr1	184853857	rs112268696	A	G	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:123,147:0.54:270
chr1	184868251	rs3753575	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=7.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-1.106;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr1	185061018	rs12408074	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	185094277	rs7523448	G	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	185119794	rs1544051	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	185135745	rs950327	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	185137454	rs58809696	T	TAAATGATAGAC	1446.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.67;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	185137461	rs56166198	A	T	478.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.672;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr1	185137464	.	T	TAA	1450.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.80;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	185137628	rs10797999	C	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	185143721	rs10489579	A	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	185144347	rs6696591	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	185153545	rs76544683	G	GT	1076.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	185171869	rs6698109	A	G	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr1	185240474	rs12041704	A	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr1	185259731	rs2378909	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr1	185267114	rs10174	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	185815063	rs41317459	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.22;ReadPosRankSum=-0.703;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	185833565	rs7556537	A	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	185878667	rs16824732	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	185880929	rs55943726	A	G	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-1.023;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:41,68:0.62:109
chr1	185951573	.	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-2.688;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	185986040	.	G	T	639.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr1	185988567	rs11290212	CT	C	133.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	186007284	rs73064308	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=-1.309;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	186022032	rs10911808	T	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr1	186026474	rs12129650	T	C	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr1	186030902	rs10737266	G	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	186031041	rs7522627	C	T	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	186039006	rs761905	C	T	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	186050417	rs10798035	A	G	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	186055371	rs6425017	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	186057181	rs10911816	T	C	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	186062409	rs74909345	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr1	186064760	rs1022671	A	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.75;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	186076224	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.142;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:87,17:0.16:104
chr1	186077463	rs1555495	A	G	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	186081918	rs7555520	C	T	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	186086578	rs10157742	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	186089072	rs2891230	G	A	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.019;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:108,72:0.40:180
chr1	186089112	rs2383434	T	C	5320.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.056;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=1.065;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,210:1.00:211
chr1	186089363	rs10752962	C	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	186092076	rs2057388	A	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	186101539	rs10911825	A	G	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	186113925	rs6693278	G	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.611;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	186113931	rs3737941	T	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	186114443	rs5779272	CT	C	1138.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr1	186141301	rs4651302	G	A	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	186147511	rs146846253	C	CT	931.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr1	186265948	rs1293987	T	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	186266155	rs80243887	C	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	186274133	rs6425024	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	186274159	rs2273778	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	186275760	rs16825150	G	A	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:113,146:0.56:259
chr1	186276876	.	CACCCCTAAGGAGCCTGCTCCAACT	C	1823.73	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr1	186277088	rs68069719	G	C	22540.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,869:1.00:869
chr1	186278240	rs10158395	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr1	186281392	rs138093894	T	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr1	186286782	rs34585917	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	186300790	rs77661411	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	186300849	rs116577481	A	G	167.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.93;ReadPosRankSum=-0.887;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	186308759	rs10494585	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-1.512;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr1	186313249	rs2950829	A	G	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	186313293	rs76557279	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr1	186327923	.	AAAG	A	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	186329869	rs2026187	C	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	186330643	rs10494586	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	186330700	rs36117514	A	AG	1090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=2.052;QD=17.04;ReadPosRankSum=1.253;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr1	186344137	rs75545265	G	A	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:143,181:0.56:324
chr1	186357523	rs1290390	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	186368338	rs59324641	AT	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.980;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	186418600	rs12407957	C	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.031;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr1	186430295	rs75856786	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr1	186645851	rs201231411	AAAAT	A	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=7.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.324;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	186645927	rs2066826	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-1.627;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	186647323	.	AT	A	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.553;QD=2.66;ReadPosRankSum=0.143;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	186649221	rs2745557	A	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	186839861	rs7547993	G	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:95,128:0.57:223
chr1	186862419	rs7519192	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	186863385	rs2307193	TAA	T	308.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=38.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	186908385	rs2307200	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	186919732	rs4650709	A	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	186919993	rs969357	G	A	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	186925168	rs5007825	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=35.08;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	186925168	.	AGC	GGC,GGT	172	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=31;MMLQ=24;MQ=59.76;NF=13,6;NR=7,4;PP=172,88;QD=10.3385606274;SC=CACCGTGCCCAGCCCAAAGAT;SbPval=0.53;Source=Platypus;TC=21;TCF=14;TCR=7;TR=20,10;WE=186925178;WS=186925166;set=Platypus	GT:AF:DP	0/1:0.95:21
chr1	186925170	rs144541172	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.972;QD=9.28;ReadPosRankSum=-0.140;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	186925194	rs5007824	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	186925552	rs2307199	T	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	186946638	rs2891262	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.468;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	186946641	rs2891263	C	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.468;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	186946912	rs2307198	G	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	187610538	rs10157977	C	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	187610852	rs10159182	A	T	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:184,215:0.54:399
chr1	190234239	rs77612267	T	A	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	192128183	rs4454527	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	192129370	rs4329489	G	A	83.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	192544795	rs2984920	A	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	192545099	rs7535818	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr1	192779227	rs2746073	T	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	192780088	rs5779653	GCT	G	3824.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:208,119:0.36:327
chr1	193051685	rs2275444	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr1	193051893	.	A	AT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=0.709;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	193053996	.	G	GA	35.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	193054088	rs72740218	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.502;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	193074371	rs10801175	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	193074651	rs10921310	T	A	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	193090865	rs10737621	C	A	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=2.223;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:112,62:0.36:174
chr1	193094375	rs4466634	T	C	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-0.058;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:63,58:0.48:121
chr1	193202001	rs10921328	C	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=-0.197;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	193205272	rs3738244	T	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	193218793	rs41305084	T	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	196227526	rs977157	A	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	196242764	rs558895	T	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	196251522	rs2477357	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	196254970	rs2477360	C	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	196303297	rs35078847	TAG	T	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.000;QD=17.17;ReadPosRankSum=0.204;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	196311513	rs6658788	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	196398619	rs1538684	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	196398974	rs12121250	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.832;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	196654324	rs1061147	A	C	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	196658497	rs482934	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.78;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	196658905	rs12029785	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	196659237	rs1061170	C	T	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	196684625	rs203674	G	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	196695742	rs3753396	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	196697489	.	TAAG	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr1	196705926	rs375046	C	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	196709774	rs1065489	G	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	196712577	rs513699	T	C	2771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.393;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=24.238;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-15.905;QD=8.48;ReadPosRankSum=-3.791;SOR=1.760;set=HC	GT:AD:AF:DP	0/1:249,78:0.24:327
chr1	196712586	rs61822181	C	T	3018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.927;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=28.763;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-14.166;QD=8.18;ReadPosRankSum=-4.283;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:268,101:0.27:369
chr1	196743927	rs385390	A	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	196743964	rs446868	C	A	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	196757258	rs400642	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	196757392	rs400344	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.59;QD=24.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	196757874	rs387111	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=44.03;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	196757881	rs387107	G	T	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=44.04;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	196758778	rs384032	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	196794519	rs442759	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	196794867	rs372075	G	A	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	196794909	rs409549	G	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	196796184	rs399507	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	196796240	rs438781	T	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	196797123	rs677961	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	196797238	rs425757	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.28;QD=40.00;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	196797244	rs113811987	C	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.50;QD=45.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	196797292	rs388862	G	C	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.70;QD=29.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	196799691	rs12406079	G	A	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.21;QD=26.55;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	196801042	rs4230	G	T	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=25.85;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	196801078	rs414628	A	T	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	196801190	rs390679	C	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	196874356	rs10801578	G	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	196883940	rs149571115	TA	T	74.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.67;QD=12.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	196884074	rs201089095	A	AT	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-1.428;QD=8.02;ReadPosRankSum=-0.361;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr1	196884258	rs150845796	A	T	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=47.60;MQRankSum=-4.941;QD=8.87;ReadPosRankSum=0.341;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:114,97:0.46:211
chr1	196884290	rs200244837	T	A	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=47.07;MQRankSum=-4.629;QD=8.98;ReadPosRankSum=0.261;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr1	196887181	rs1971579	T	G	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;MQ=57.67;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	196887274	rs3795341	G	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	196920178	rs3828032	C	T	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	196926956	rs3748556	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	196926973	rs3748555	C	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.637;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	196946869	rs3748557	T	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.033;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:55,64:0.54:119
chr1	196952268	rs45489701	C	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	196967354	rs35662416	G	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.065;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr1	197026672	rs1759009	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	197030201	rs5997	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr1	197031021	rs6003	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:134,123:0.48:257
chr1	197053373	rs12677	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	197053561	rs200839523	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.391;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.043;QD=3.08;ReadPosRankSum=0.523;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	197055925	rs10754213	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	197057242	rs75268113	T	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=1.803;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	197063352	rs41304071	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr1	197070442	rs3762271	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr1	197070697	rs41310927	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.497;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr1	197070707	rs41308365	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.767;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr1	197070815	rs1412640	T	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	197070901	rs964201	A	G	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	197072420	rs41310925	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr1	197073298	rs80238010	G	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr1	197073932	rs2878749	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr1	197086958	.	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.955;QD=2.45;ReadPosRankSum=-1.035;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	197091537	rs4915337	A	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,66:0.48:138
chr1	197091739	rs80058948	C	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:94,120:0.56:214
chr1	197091808	rs61819088	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	197097891	rs150344996	AAAAT	A	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.98;ReadPosRankSum=0.076;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	197104149	rs35659894	TA	T	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	197109042	rs1332663	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	197112533	rs6677082	G	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.161;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:110,63:0.36:173
chr1	197113073	rs1571964	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.071;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr1	197141243	rs6428389	A	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	197141252	rs190061063	TA	CC	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr1	197147471	rs61819118	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	197168625	rs10494751	C	A	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:125,176:0.58:301
chr1	197316408	rs1572514	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	197316435	rs1337167	T	C	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	197325908	rs2786098	T	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	197326259	rs2253346	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	197390368	rs3902057	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:167,97:0.37:264
chr1	197398086	rs7534863	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr1	197446702	rs1135810	G	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr1	197447037	rs41302107	T	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:120,70:0.37:190
chr1	197480927	rs12142127	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr1	197480986	rs10494755	C	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.689;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:56,47:0.46:103
chr1	197482167	rs2013617	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	197510025	rs3902061	G	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	197510299	rs3850628	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	197515715	rs4303099	G	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	197515777	rs4316386	A	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	197515809	.	C	T	545.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr1	197515981	rs10922249	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.046;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	197576307	rs11411505	A	AT	522.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	197741951	rs2477067	C	A	1882.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	197742171	rs2488396	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	197744098	rs117405403	G	C	88.03	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	197876533	rs1546244	C	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	197890422	rs12122995	C	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	197896728	rs12046958	T	C	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	197898023	rs10664707	C	CA	251.86	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	197901206	rs34018572	C	CA	165.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=15.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	198288709	rs6679100	A	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr1	198663346	rs78958674	G	A	116.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.60;ReadPosRankSum=-0.921;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	198677420	rs2274368	T	A	69.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.96;ReadPosRankSum=-0.253;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	198698358	rs138335258	T	TTTTA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.792;QD=12.05;ReadPosRankSum=-1.042;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	198701289	rs1932433	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	198711170	.	C	CAAA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=2.909;QD=6.55;ReadPosRankSum=-0.171;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	199998304	rs60535681	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:83,87:0.51:170
chr1	200014762	rs2817008	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.050;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	200014766	rs2363454	G	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.87;ReadPosRankSum=2.072;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	200089872	rs10494808	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr1	200143064	.	CTTTTT	C	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.74;ReadPosRankSum=-0.872;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	200143442	rs1060061	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	200182654	rs6427805	T	C	2294.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.12;MQRankSum=0.526;QD=34.77;ReadPosRankSum=-0.580;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:2,64:0.97:66
chr1	200182654	.	TCGGAACGACC	CCGGAACGACC,CCGGAACGACT	333	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=135;MMLQ=24;MQ=61.07;NF=27,16;NR=17,9;PP=273,333;QD=6.99480028516;SC=TCTCCTTCCGTCGGAACGACC;SbPval=0.56;Source=Platypus;TC=46;TCF=28;TCR=18;TR=44,25;WE=200182672;WS=200182644;set=Platypus	GT:AF:DP	0/1:0.96:46
chr1	200182664	rs6427806	C	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=3.098;QD=9.78;ReadPosRankSum=0.265;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr1	200182703	rs141962771	GGAGGACGCCGGAGAGGAGGCCGGA	G	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr1	200182834	rs12028402	A	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr1	200183398	rs10919847	C	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr1	200183460	rs10919848	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	200311868	rs2790109	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr1	200311910	rs2225986	T	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr1	200378729	.	GCTGCCGCCGCCGCCGCCGCCGCCA	G	1471.73	.	AC=1;AF=0.500;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	0/1:106,46:0.30:152
chr1	200538885	rs10800711	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	200538962	rs73070685	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.073;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	200544650	rs142403729	TACAC	T,TAC	2490.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=0.760;SOR=0.673;set=HC	GT:AD:AF:DP	1/2:1,37,35:0.51,0.48:73
chr1	200544701	.	TAAC	T	4176.73	.	AC=1;AF=0.500;AN=2;DP=212;set=Intersection	GT:AD:AF:DP	0/1:96,108:0.53:204
chr1	200558363	rs6665951	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr1	200561456	rs16846948	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	200567596	rs2809358	T	G	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	200569392	rs2809357	C	A	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	200574959	rs2808238	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	200575744	rs10577607	CTAAA	C	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	200575794	rs2794410	A	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	200578093	rs2794409	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	200583380	rs2808241	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	200594005	rs2808257	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	200594240	rs2809350	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	200610525	rs5780032	TA	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.35;ReadPosRankSum=-1.068;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	200618238	rs6665604	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	200619530	rs2809365	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	200632960	rs57155598	T	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.618;QD=16.51;ReadPosRankSum=-1.113;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	200632966	rs60572979	A	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.605;QD=16.16;ReadPosRankSum=-0.918;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	200635550	rs3795634	T	C	5661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=0.861;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:113,147:0.57:260
chr1	200635560	rs3795633	T	C	5530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.67;ReadPosRankSum=0.674;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:104,140:0.57:244
chr1	200776500	rs79456176	T	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr1	200816520	.	TG	T	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.306;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	200816521	rs2172666	G	T	319.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.175;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr1	200816522	rs35428855	TG	T	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.393;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	200816658	rs2131834	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	200819424	rs150601775	AT	A	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	200821924	rs2275194	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	200822372	rs114517250	G	C	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	200824108	rs2275193	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	200868493	rs72225687	GTGTGTGTGCA	G	756.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr1	200876788	rs35342076	T	TAA	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.097;QD=9.79;ReadPosRankSum=0.218;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	200877786	rs2279837	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.231;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	200877850	rs41299637	T	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.092;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:78,93:0.54:171
chr1	200880978	rs296520	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	200881172	rs296521	C	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-0.785;QD=7.68;ReadPosRankSum=-1.706;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	200881392	rs10800746	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	200943793	rs71991687	CAGGA	C	5388.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	200944840	rs296563	T	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	200956404	.	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.420;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	200957697	rs12142704	A	G	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr1	200960307	rs2297909	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	200965601	rs10920088	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	200967490	rs10920089	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr1	200978412	rs7556510	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr1	201009556	rs1546416	A	G	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chr1	201009897	rs6427875	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	201010862	rs6675915	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	201012484	rs13374149	C	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:113,101:0.47:214
chr1	201017602	rs7535428	T	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.653;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	201020105	rs6702590	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	201021619	rs12029212	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	201030668	rs2297904	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr1	201030988	rs61614423	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	201031307	rs2297903	A	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	201035087	rs113792034	G	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr1	201038687	rs7415038	A	G	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	201044748	rs1998721	A	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:104,98:0.49:202
chr1	201047075	rs4915477	A	G	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	201047111	rs9427714	A	G	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:212,151:0.42:363
chr1	201052310	rs12742169	A	T	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=0.935;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:87,70:0.45:157
chr1	201052310	.	AGA	TGC	953	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=22;MQ=60.0;NF=21;NR=13;PP=953;QD=29.6019963195;SC=GGTCAGCCAGAGAGGCTGGTT;SbPval=0.64;Source=Platypus;TC=82;TCF=49;TCR=33;TR=34;WE=201052320;WS=201052300;set=Platypus	GT:AD:AF:DP	0/1:48,34:0.41:82
chr1	201052312	rs12742170	A	C	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.746;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:88,71:0.45:159
chr1	201052474	rs12724643	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr1	201052562	rs12743065	G	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	201060865	rs2296383	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:148,74:0.33:222
chr1	201079235	rs1325310	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr1	201079458	rs1325309	T	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,103:0.61:169
chr1	201112981	rs8158	A	G	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-2.159;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:89,62:0.41:151
chr1	201113118	rs3738266	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	201116018	rs3752979	C	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	201122784	rs6684980	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.296;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr1	201122947	rs1925361	T	G	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	201162360	rs12069088	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	201162411	rs12089471	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	201162643	rs10800761	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-0.641;QD=14.98;ReadPosRankSum=1.270;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	201163191	rs1107128	G	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr1	201166383	rs4915221	G	A	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:124,150:0.55:274
chr1	201166435	rs11589317	T	C	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr1	201169601	rs35998091	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr1	201170772	rs10157730	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	201170824	rs10158976	C	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	201171007	rs10800762	T	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	201173104	rs832160	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.143;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	201174204	rs12725611	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:100,77:0.44:177
chr1	201175227	rs832156	C	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	201175715	rs1341631	G	T	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	201176018	rs10753895	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	201176108	rs12094334	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	201176651	rs11804558	C	T	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.458;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr1	201176968	rs12063867	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr1	201177246	rs72751165	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr1	201177278	rs7551098	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:126,100:0.44:226
chr1	201177538	rs7551538	G	T	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr1	201178470	rs12757706	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr1	201178667	rs199718718	C	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=15.082;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-9.960;QD=1.95;ReadPosRankSum=-3.824;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chr1	201178680	.	A	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=12.673;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-9.153;QD=4.15;ReadPosRankSum=-5.086;SOR=1.703;set=HC	GT:AD:AF:DP	0/1:136,33:0.20:169
chr1	201178696	.	G	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=5.305;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-8.651;QD=0.52;ReadPosRankSum=-2.146;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:176,15:0.08:191
chr1	201178702	.	G	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=8.670;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-8.975;QD=0.99;ReadPosRankSum=-1.115;SOR=1.790;set=HC	GT:AD:AF:DP	0/1:182,18:0.09:200
chr1	201178705	.	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=10.506;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-9.006;QD=0.94;ReadPosRankSum=0.132;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:184,19:0.09:203
chr1	201178904	.	A	G	550	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=42;MMLQ=25;MQ=48.22;NF=23;NR=16;PP=550;QD=14.9941336551;SC=GGGGGTTCTGAAGAAATGGGG;SbPval=0.82;Source=Platypus;TC=85;TCF=43;TCR=42;TR=39;WE=201178912;WS=201178894;set=Platypus	GT:AD:AF:DP	0/1:46,39:0.46:85
chr1	201178924	.	AAG	GAA	1682	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=36;MMLQ=26;MQ=46.26;NF=27;NR=15;PP=1682;QD=41.3206636872;SC=GTCAGTGAATAAGGCAGGTTA;SbPval=0.9;Source=Platypus;TC=86;TCF=45;TCR=41;TR=42;WE=201178934;WS=201178914;set=Platypus	GT:AD:AF:DP	0/1:44,42:0.49:86
chr1	201181045	rs73087062	G	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:48,74:0.61:122
chr1	201181217	rs12070918	A	G	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.481;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:223,152:0.41:375
chr1	201181223	rs12070919	A	G	12691.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.84;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	201181920	rs12060924	G	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:119,84:0.41:203
chr1	201182779	rs2282413	A	G	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,104:0.46:228
chr1	201183363	rs2282415	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:95,58:0.38:153
chr1	201183402	rs1568810	T	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:106,63:0.37:169
chr1	201184275	rs2275673	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr1	201184292	rs200857066	A	AGCCCT	464.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr1	201187764	rs10920144	T	C	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	201187828	rs3738268	T	C	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	201187954	rs6667020	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	201193668	rs6687494	G	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	201195119	rs3738270	C	T	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:354,231:0.39:585
chr1	201197331	rs3753971	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	201197531	rs3738273	C	T	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:243,265:0.52:508
chr1	201197676	rs3738274	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr1	201282167	rs1772860	C	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr1	201285759	rs1779297	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	201285909	rs1534051	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	201286614	rs11336457	GA	G	3341.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	201286628	rs1772823	C	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	201286678	rs1794867	C	T	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:85,112:0.57:197
chr1	201286771	rs1722779	C	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:97,125:0.56:222
chr1	201288898	rs1722759	A	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	201288955	rs1626370	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:87,112:0.56:199
chr1	201289175	rs1628151	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	201290968	rs1779292	T	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	201291066	rs2071960	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:190,115:0.38:305
chr1	201291283	rs1772832	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr1	201292036	rs1779289	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr1	201292110	rs1779288	T	C	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr1	201293512	rs36076398	TG	T	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr1	201293970	rs1620046	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	201328267	rs3730244	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	201328824	rs2275863	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr1	201328913	rs45509695	G	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr1	201330583	rs2275861	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr1	201331240	rs11810834	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr1	201331379	rs11806184	T	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.562;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	201331554	rs1104859	T	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	201331664	rs2365652	C	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	201334382	rs3729547	G	A	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=1.166;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:115,100:0.47:215
chr1	201335899	rs1573230	C	T	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	201336028	rs45449197	G	C	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:189,238:0.56:427
chr1	201336141	rs45585240	T	C	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:193,220:0.53:413
chr1	201336984	rs3729843	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr1	201337170	rs3729842	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	201338553	rs10800776	T	C	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	201338586	rs10920183	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr1	201338896	rs10920184	T	C	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:155,98:0.39:253
chr1	201339043	rs12049476	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr1	201341175	rs45533739	CAGAAG	C	1838.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,50:0.42:120
chr1	201341341	rs868407	C	T	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	201350983	rs16848494	C	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr1	201351558	rs114518974	C	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.589;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	201351644	rs3831363	T	TGAAATGACTCCTCCTCTCCC	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	201353827	rs10920189	G	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr1	201354027	rs115871011	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr1	201355445	rs138542999	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	201355522	rs4128458	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr1	201355761	rs12088790	A	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,93:0.52:179
chr1	201355898	rs34370053	G	A	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr1	201358304	rs3738281	C	A	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:94,110:0.54:204
chr1	201360379	rs60465361	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	201383616	rs2026593	A	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	201383643	rs2026594	A	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	201434740	rs1053592	G	A	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	201435303	rs12409710	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr1	201453289	rs576697	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	201618264	rs1267119	C	T	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:155,199:0.56:354
chr1	201687451	rs11576721	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr1	201749520	rs529581	G	C	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:120,91:0.43:211
chr1	201749778	rs116041086	C	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	201752429	rs527725	A	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr1	201754410	.	CTT	C	967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.856;QD=16.13;ReadPosRankSum=-0.614;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:11,49:0.82:60
chr1	201755469	rs12563363	C	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr1	201762777	rs74136674	A	G	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.609;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr1	201772863	rs34105833	T	TG	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	201780786	rs74136675	T	C	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:69,138:0.67:207
chr1	201827919	rs72742073	C	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr1	201837934	rs34353605	CGT	C	667.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr1	201840059	rs150361248	GTTATT	G	1434.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	201840464	rs2644124	T	C	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	201840537	.	G	A	191	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=27;MQ=50.42;NF=0;NR=10;PP=191;QD=22.5771212547;SC=TTTTTTTTGAGACAGTCTCGC;SbPval=1.0;Source=Platypus;TC=19;TCF=2;TCR=17;TR=10;WE=201840545;WS=201840527;set=Platypus	GT:AD:AF:DP	1/0:9,10:0.53:19
chr1	201844128	rs2678203	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	201858887	rs7539696	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	201860626	rs2250377	A	G	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr1	201865763	rs8028	A	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	201868333	rs3738290	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	201926448	rs146780639	G	A	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:147,174:0.54:321
chr1	201938482	rs58623305	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	201951762	.	G	C	321.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	201952244	rs61241020	G	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr1	201952294	rs73074403	C	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr1	201952310	rs112370844	T	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	201952324	rs142084247	CGGGAGGAGGGACA	C	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	201952574	rs4950806	T	C	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	201952598	rs56768485	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr1	201952755	rs4950807	T	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr1	201958309	rs10920296	C	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	201965317	rs74710742	G	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chr1	201969082	rs1130790	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr1	201970562	rs4332408	T	C	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	201970748	rs4131469	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr1	201970986	rs35227221	C	CA	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr1	201973565	rs3820439	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr1	201980119	rs2819361	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	201981218	rs11543979	C	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr1	201981232	rs58166377	A	G	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr1	201981298	rs79918642	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	201981354	rs56310296	TG	CC	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	201981774	rs55729978	G	A	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:120,147:0.55:267
chr1	201981862	rs2819362	T	C	3743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=5.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.111;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:135,185:0.58:320
chr1	201983242	rs2819365	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr1	202092046	rs3795593	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	202092360	rs3795595	G	A	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	202092415	rs3795596	A	G	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	202092580	rs7516762	T	C	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	202096815	rs3820380	G	A	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	202103802	rs4342901	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.506;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	202107422	.	AACACACAC	A,AAC	1249.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=41;set=Intersection	GT:AF:DP	1/2:0.34,0.63:35
chr1	202113835	rs4989100	T	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	202121643	rs10920337	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	202122783	rs11590076	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=2.889;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	202122840	rs35407093	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr1	202124797	rs377155409	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr1	202128768	rs59879043	C	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr1	202129824	.	C	T	3977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.252;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:313,207:0.40:520
chr1	202129824	.	CCT	TCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=59.96;NF=49;NR=50;PP=2944;QD=20;SC=ATTCTGCCCTCCTGTGCCTGC;SbPval=0.54;Source=Platypus;TC=255;TCF=127;TCR=128;TR=99;WE=202129834;WS=202129814;set=Platypus	GT:AD:AF:DP	0/1:156,99:0.39:255
chr1	202129826	rs4309039	T	C	7652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.676;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:308,204:0.40:512
chr1	202129895	rs3935295	G	A	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:255,170:0.40:425
chr1	202130754	rs3934648	T	C	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr1	202152859	rs2993441	A	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr1	202155331	.	C	CTGCCCCCTTGCCCCCT	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.663;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr1	202155543	rs2993432	A	C	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:148,103:0.41:251
chr1	202156135	.	C	CCCTCGCTCCTCGCTCCTCGCT	363.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,13:0.22:59
chr1	202156482	rs3010088	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:105,71:0.40:176
chr1	202156628	rs3010089	A	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:118,85:0.42:203
chr1	202163063	rs2361431	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr1	202163364	rs2077598	C	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	202163516	rs1812761	C	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr1	202194441	rs3010067	G	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr1	202196931	rs1452070	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr1	202266547	rs788827	C	T	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	202266607	rs788826	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr1	202274936	rs705762	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr1	202276494	rs896551	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:188,141:0.43:329
chr1	202287206	rs788795	T	C	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:152,96:0.39:248
chr1	202287537	rs788794	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:121,78:0.39:199
chr1	202287813	rs788793	T	C	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:278,191:0.41:469
chr1	202304868	rs14451	T	C	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr1	202318316	rs930734	A	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr1	202386075	rs2843413	T	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	202457784	rs3820374	T	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr1	202531741	rs2249811	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr1	202536848	rs2292489	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.601;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr1	202572105	rs55968420	GCC	G	10300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.078;QD=16.04;ReadPosRankSum=2.708;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:344,298:0.46:642
chr1	202574784	rs1968583	G	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:141,132:0.48:273
chr1	202703053	rs4310498	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	202705455	rs1141109	G	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr1	202709715	.	A	AC	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=0.776;QD=11.73;ReadPosRankSum=0.362;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	202715244	rs3216061	G	GA	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,58:0.41:140
chr1	202715284	rs1141108	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:165,115:0.41:280
chr1	202718028	rs1892163	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	202718202	rs1892164	G	A	4030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.093;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:217,209:0.49:426
chr1	202722277	rs4950742	G	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-1.135;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	202731986	rs140328663	C	CCTCAA	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	202733238	rs3196669	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.664;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:56,47:0.46:103
chr1	202735634	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.456;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	202735751	rs12140729	T	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.507;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr1	202743973	rs11337395	AT	A	161.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.297;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	202777105	rs112577603	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.321;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	202861813	rs114910242	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr1	202866245	rs146495812	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	202889207	rs7520522	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	202917724	rs114413447	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr1	202934761	rs141825609	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.13;MQRankSum=1.981;QD=5.53;ReadPosRankSum=1.559;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	202934765	rs12125832	C	T	307.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.92;QD=34.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	202956340	rs705754	T	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr1	202976749	rs146489247	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr1	202977809	rs6678040	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.698;QD=8.70;ReadPosRankSum=1.022;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr1	202978032	rs1418444	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	202983944	rs149155170	G	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr1	202990110	rs71142585	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-1.045;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr1	203004367	rs10920551	C	T	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	203004627	rs5780134	A	AC	3056.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.84;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	203004930	rs139600380	T	TAGC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	203006098	rs782803	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	203006179	rs782804	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	203006243	rs782805	A	G	9116.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-0.125;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,361:1.00:362
chr1	203008174	rs61821060	G	C	9389.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	203012661	rs372177187	CGT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.338;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:114,15:0.12:129
chr1	203012906	rs4950908	G	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	203014943	rs73073846	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr1	203017454	rs78717186	C	T	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.755;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:89,72:0.45:161
chr1	203018190	rs6696772	G	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	203018764	rs201197903	GGCCCCCACTCCC	G	890.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	203024692	rs61746231	G	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:230,180:0.44:410
chr1	203028371	rs61732315	G	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr1	203028711	rs4590732	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.67;ReadPosRankSum=-1.256;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	203029017	rs2270546	A	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr1	203030685	rs2270543	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	203036757	rs2275354	T	C	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	203040673	rs9803710	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	203040740	rs11583155	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	203040816	rs2270540	G	C	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	203040922	rs2270541	G	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	203045413	rs11578206	G	T	5346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.134;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:360,272:0.43:632
chr1	203045583	rs6682652	T	C	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:166,149:0.47:315
chr1	203053663	rs11807924	A	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr1	203053768	rs903356	T	C	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	203055101	rs4950877	A	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:92,82:0.47:174
chr1	203137784	rs35823777	A	ACT	8529.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	203140753	rs79053449	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	203143395	rs3737872	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr1	203143725	rs2642531	G	C	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr1	203148633	rs4950927	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr1	203149486	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	203150208	rs2275353	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	203152801	rs880633	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.782;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:66,44:0.40:110
chr1	203153555	rs12128727	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr1	203153634	rs2071579	C	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:170,90:0.35:260
chr1	203154532	rs1538372	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	203155703	rs7515776	A	T	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:250,276:0.52:526
chr1	203155882	rs4950928	G	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	203175107	rs2494296	A	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	203187341	rs142759151	T	TGGTCAA	1312.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;MQ=60.49;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr1	203188692	rs2486958	A	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr1	203192137	rs3820145	T	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr1	203192567	rs2297949	G	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	203192820	rs10920586	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr1	203194186	rs2297950	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr1	203197871	rs116801714	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	203311736	rs1891180	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-1.099;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:30,39:0.57:69
chr1	203316640	rs77856193	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:66,100:0.60:166
chr1	203452226	rs2233724	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr1	203465392	rs28446858	T	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.755;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr1	203465396	rs2242199	T	C	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-0.502;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr1	203466266	rs28462337	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:122,118:0.49:240
chr1	203466349	rs2306152	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	203472112	rs79523790	T	C	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:131,148:0.53:279
chr1	203652444	rs1419114	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr1	203667409	rs2228445	T	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,71:0.44:163
chr1	203671279	rs78969040	C	T	4589.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:283,244:0.46:527
chr1	203676947	rs12075370	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	203679934	rs2032018	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr1	203690608	rs12083824	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	203693200	rs149093200	G	A	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	203698627	rs2365862	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.03;ReadPosRankSum=3.287;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	203698630	rs11587394	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=2.919;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	203698672	rs5780193	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=2.314;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	203739908	rs147808067	C	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.900;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	203740458	rs3820196	C	A	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	203740462	rs3820195	G	A	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	203743122	rs3820194	G	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:143,139:0.49:282
chr1	203743653	rs3766748	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr1	203766964	rs3737972	A	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	203769170	rs76919946	A	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:136,83:0.38:219
chr1	203786152	rs7555435	A	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	203787700	rs4951260	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	203803016	rs6694647	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	203821133	rs16830293	C	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	203821200	rs7512877	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	204006538	rs4951291	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	204006597	rs4951039	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	204009298	.	AGTTT	A	604.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	204009613	rs6683614	G	A	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	204010389	rs10437107	G	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr1	204081655	.	A	ACACACACT,ACACACT	646.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=43;set=Intersection	GT:AF:DP	0/1:0.66:41
chr1	204081892	rs2250538	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	204085609	rs7551756	A	G	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:160,124:0.44:284
chr1	204091165	rs114792458	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr1	204091592	rs73069949	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr1	204094987	rs34758764	C	T	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:83,97:0.54:180
chr1	204103618	rs2293335	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr1	204110334	rs10793755	A	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	204115934	rs2293337	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:75,56:0.43:131
chr1	204116628	rs74139468	G	C	4016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.668;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:186,205:0.52:391
chr1	204124865	rs2368564	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr1	204125272	rs3795574	C	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr1	204125987	rs3730103	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-2.738;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	204129671	rs5707	A	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr1	204159542	rs1132506	G	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	204159544	rs35128240	C	CA	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	204159611	rs71745629	CT	C	1260.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr1	204159787	rs4889	G	C	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr1	204167661	rs113154484	T	C	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr1	204170723	rs111522024	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr1	204170993	rs6700426	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr1	204198209	rs3795571	A	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	204199614	rs10900562	C	T	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	204210750	rs4412655	C	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr1	204210791	rs4951325	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr1	204214975	.	TACACACAC	T,TAC	2881.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=100;set=Intersection	GT:AF:DP	1/2:0.24,0.76:71
chr1	204216410	rs4951329	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	204216468	rs4512713	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr1	204216601	rs4288652	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:86,64:0.43:150
chr1	204219850	rs4951331	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	204230581	rs3795569	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr1	204234196	.	G	GGT	974.73	.	AC=1;AF=0.500;AN=2;DP=111;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr1	204234222	rs4076020	T	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.179;QD=14.85;ReadPosRankSum=0.437;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:52,36:0.41:88
chr1	204234225	rs4073136	G	A	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.159;QD=15.59;ReadPosRankSum=0.223;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:49,35:0.42:84
chr1	204237416	rs10900571	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr1	204379452	rs2089891	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr1	204379617	rs3014626	T	C	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	204394888	rs372358199	CA	C	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	204396728	rs17406271	A	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.363;QD=5.87;ReadPosRankSum=-1.644;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:76,42:0.36:118
chr1	204396745	rs370349965	GA	G	674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.357;QD=4.82;ReadPosRankSum=-0.775;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:90,50:0.36:140
chr1	204396830	rs17334387	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:113,76:0.40:189
chr1	204397427	rs60317484	G	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	204398073	rs61758009	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=-1.248;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	204398077	rs61758008	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=-0.191;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	204399061	rs2271419	A	G	2686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.684;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:117,74:0.39:191
chr1	204399064	rs2271420	G	A	2683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=0.924;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:118,75:0.39:193
chr1	204401059	rs949696	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	204403659	rs3747636	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr1	204409281	rs3014631	C	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:69,58:0.46:127
chr1	204413297	rs2292459	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,45:0.42:108
chr1	204429212	rs5013460	AT	TG	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.67;ReadPosRankSum=0.750;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	204429215	rs5013458	TA	AG	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.05;ReadPosRankSum=-1.254;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr1	204429285	rs2999485	A	G	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	204429838	rs2271414	C	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr1	204433093	rs2271415	A	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	204433511	rs11455991	T	TC	596.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	204434277	rs2942149	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr1	204438708	rs61761687	G	A	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:128,149:0.54:277
chr1	204494756	.	G	GT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.032;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:111,32:0.22:143
chr1	204506107	rs4245738	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr1	204518842	rs4245739	C	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr1	204587589	rs76468836	C	A	6367.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:262,319:0.55:581
chr1	204913271	rs12061847	C	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	204915393	rs2595960	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr1	204923282	rs12068836	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	204923649	rs7554850	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.73;ReadPosRankSum=0.911;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	204924039	rs77635708	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:212,145:0.41:357
chr1	204926980	rs7519658	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr1	204931077	rs12740109	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	204931137	rs16854813	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr1	204939763	rs6690894	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.148;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr1	204939899	rs11240319	T	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.668;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:63,38:0.38:101
chr1	204939917	rs6666095	G	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr1	204943285	rs2595945	A	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr1	204943947	rs2246662	C	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr1	204943991	rs2246661	CA	TG	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr1	204966402	rs7545613	A	G	11175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.128;QD=11.29;ReadPosRankSum=0.243;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:435,555:0.56:990
chr1	204966428	rs2802808	C	G	11471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=993;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.152;QD=11.72;ReadPosRankSum=0.573;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:420,559:0.57:979
chr1	204966690	rs2794858	G	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:109,86:0.44:195
chr1	204966749	rs2595944	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	204970148	rs10716288	TC	T	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	204970243	rs4950976	A	G	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr1	204970302	rs4951151	T	C	2609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.148;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:105,130:0.55:235
chr1	204970495	rs4951152	C	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr1	204978442	rs5780258	T	TCTG	10472.73	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:191,264:0.58:455
chr1	204978533	rs1530745	A	G	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:170,173:0.50:343
chr1	204978590	.	C	A	5152.77	.	AC=1;AF=0.500;AN=2;DP=459;set=Intersection	GT:AD:AF:DP	0/1:207,248:0.55:455
chr1	205027884	rs116612010	G	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-0.458;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:32,49:0.60:81
chr1	205031116	rs2229866	C	T	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:212,153:0.42:365
chr1	205033283	rs1470637	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	205033374	rs2305277	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr1	205033518	rs79431021	C	G	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:148,112:0.43:260
chr1	205036412	rs79952847	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr1	205036461	rs78898977	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr1	205038731	rs2305275	C	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	205039209	rs4951165	C	A	3147.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:116,153:0.57:269
chr1	205039295	rs56283998	A	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr1	205040943	rs12117194	C	G	104.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	205041158	rs2229868	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:85,109:0.56:194
chr1	205042237	rs56111335	C	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:169,111:0.40:280
chr1	205042918	rs189196763	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr1	205042939	rs17416088	C	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr1	205052723	rs10494858	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr1	205052939	rs4950979	G	A	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	205053150	rs16855059	A	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr1	205053219	rs4951168	C	T	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	205063949	rs3738154	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	205065733	rs11577406	G	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-1.554;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	205070893	rs75222592	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	205074120	rs73081248	A	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.483;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	205084120	rs7515178	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	205085541	rs74774268	A	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-1.627;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	205085685	rs112587548	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	205091075	rs112648081	G	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:101,63:0.38:164
chr1	205128840	rs6679974	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=-0.271;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	205129319	rs1062715	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr1	205130413	rs3851294	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	205132842	rs79995334	T	G	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.775;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:85,57:0.40:142
chr1	205138406	rs35208779	T	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:162,99:0.38:261
chr1	205225457	rs1172147	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr1	205240913	rs9659978	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	205275206	rs4951195	AG	TT	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	205275421	rs4951197	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	205306593	rs115956445	G	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	205312767	rs7526603	G	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr1	205325458	rs2298251	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	205325609	rs2298250	C	A	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:207,204:0.50:411
chr1	205385498	rs6688045	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,59:0.35:169
chr1	205389592	rs7531012	G	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr1	205492486	rs74141238	C	T	4202.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:314,226:0.42:540
chr1	205492679	rs4623769	G	A	3762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.464;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:145,186:0.56:331
chr1	205492756	rs7529442	A	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	205493246	rs74141240	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:95,63:0.40:158
chr1	205494411	rs41310919	G	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	205495162	rs74141243	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr1	205495392	rs2297837	A	G	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	205495976	rs1544154	A	G	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	205497066	rs2297836	G	A	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:60,95:0.61:155
chr1	205498021	rs7531230	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	205498843	rs45479796	G	T	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:257,165:0.39:422
chr1	205499355	rs12042887	C	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr1	205499495	rs12035825	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,74:0.56:132
chr1	205499577	rs6668356	C	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr1	205499595	rs41264891	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr1	205499611	rs41264893	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr1	205499701	rs12748821	T	C	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:96,139:0.59:235
chr1	205499921	rs11240505	C	G	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr1	205549714	rs371465519	C	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr1	205549945	rs112290384	G	A	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:186,168:0.47:354
chr1	205553346	.	ATTTTTTTTTT	A,ATTTTTTTTTTTTT	1118.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=45;set=Intersection	GT:AF:DP	1/2:0.76,0.15:34
chr1	205554085	rs7526132	G	C	14380.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	205554095	rs7515820	A	C	14006.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	205555145	rs7531623	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.032;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr1	205555148	rs114064155	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.358;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr1	205561511	rs6593956	T	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	205589574	rs1064406	C	T	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,110:0.47:235
chr1	205600977	rs7417466	C	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-0.549;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	205615791	rs6673283	A	G	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=1.176;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:147,126:0.46:273
chr1	205615947	rs4951250	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.152;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	205686624	.	CT	C	26	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=0.9997;HP=15;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=26;QD=14.5;SC=GCAGCCCCTGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=205686632;WS=205686614;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr1	205696671	rs1772147	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	205739396	rs823139	T	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-1.509;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:41,47:0.53:88
chr1	205766159	rs5780304	CA	C	2857.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:119,104:0.47:223
chr1	205801872	rs1361754	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:160,118:0.42:278
chr1	205810947	rs11240573	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.285;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	205811413	rs6663323	C	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.710;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr1	205812057	rs113964578	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	205812912	rs7518979	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,48:0.41:118
chr1	205814485	rs1104899	G	A	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:202,207:0.51:409
chr1	205814497	rs1891460	T	C	14565.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	205884188	rs9438399	G	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr1	205886243	rs60644810	A	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.91;ReadPosRankSum=1.278;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	205886258	rs57012703	A	AG	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr1	205886376	rs35694044	T	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:114,182:0.61:296
chr1	205887981	rs16856462	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr1	205889532	rs16856473	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	205890679	rs12759719	T	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,96:0.48:198
chr1	205896475	rs7366204	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr1	205896948	rs3811424	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	205898224	.	T	C	227.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	206225112	rs3891058	T	C	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:185,265:0.59:450
chr1	206230986	rs28676508	G	A	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:98,136:0.58:234
chr1	206231203	rs28415467	G	A	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.293;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:35,77:0.69:112
chr1	206231259	rs33985287	A	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.306;SOR=0.094;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr1	206231264	rs33933482	G	A	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=9.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=0.123;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr1	206239289	rs77422737	T	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	206239574	rs28391411	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	206239667	rs28412824	G	A	260.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.26;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	206239667	.	GA	AG	61	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=0.9998;HP=3;HapScore=2;MGOF=26;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=61;QD=57.2339374311;SC=TACTCAACAAGATTCGCCCAT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=206239676;WS=206239657;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	206239668	rs28491603	A	G	260.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.26;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	206239697	rs28628301	G	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	206240266	rs79599132	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206240271	rs28523378	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.73;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	206241561	rs140623711	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:124,132:0.52:256
chr1	206241650	rs115353955	C	T	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	206317394	rs56214525	C	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.67;ReadPosRankSum=0.088;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	206317568	rs73074812	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:91,65:0.42:156
chr1	206319119	rs57621203	A	G	6546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.487;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:462,346:0.43:808
chr1	206320158	rs74402953	A	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr1	206325496	rs142173749	T	TA	715.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	206327510	rs61742539	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr1	206328647	rs28694519	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	206331333	rs116129750	A	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-2.003;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	206515372	rs76848142	G	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-1.677;QD=5.79;ReadPosRankSum=4.659;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:92,50:0.35:142
chr1	206516261	rs201036189	C	T	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=0.751;QD=9.18;ReadPosRankSum=-0.611;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr1	206566860	rs11361942	TA	T	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=52.54;MQRankSum=-7.655;QD=5.47;ReadPosRankSum=-1.391;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr1	206566904	rs2919105	T	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:120,210:0.64:330
chr1	206566947	rs375845037	C	T	4708.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:421,258:0.38:679
chr1	206567100	rs2480377	C	T	9016.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:185,419:0.69:604
chr1	206579936	rs201644221	A	G	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=-4.780;QD=15.82;ReadPosRankSum=1.346;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr1	206592517	rs9661663	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	206592859	rs116718173	C	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	206623842	rs61738371	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr1	206623866	rs11809494	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr1	206626779	rs2483059	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	206631518	rs10864212	G	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	206631532	rs12565311	T	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	206631626	rs139428631	G	A	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr1	206646666	rs41295990	C	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr1	206647742	rs1539242	A	G	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	206647787	rs1539243	T	C	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:145,109:0.43:254
chr1	206648037	rs2297546	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	206648378	rs1059704	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	206649952	rs11117909	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	206651351	rs11117948	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206652524	rs28584674	T	C	11765.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=1.288;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:4,450:0.99:454
chr1	206665052	rs12059562	C	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.797;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:98,55:0.36:153
chr1	206665837	rs11118256	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:108,74:0.41:182
chr1	206669442	rs41299894	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr1	206670756	rs141894708	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.344;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=1.562;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	206680854	rs58378114	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=1.050;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	206680983	rs2095124	A	C	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	206756755	rs375552947	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:110,66:0.38:176
chr1	206757857	rs4845112	C	A	6819.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:247,329:0.57:576
chr1	206758077	rs4418597	T	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	206766857	rs28629842	C	T	115.78	.	AC=1;AF=0.500;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;QD=19.30;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:0,6:1.00:6
chr1	206769047	rs11584983	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr1	206770283	rs11284613	AC	A	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	206772753	rs4845116	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	206773659	rs6662929	A	G	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	206776200	rs6668054	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	206776203	rs6675741	T	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.67;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	206776460	rs35252702	G	A	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:96,142:0.60:238
chr1	206776480	rs34627483	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:126,99:0.44:225
chr1	206778642	rs4077413	A	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	206779027	rs80043056	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=1.368;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	206810946	rs17013271	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr1	206811217	.	T	A	138.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	206943351	rs3024494	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	206944233	rs1554286	A	G	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr1	206944645	rs1518111	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	206944861	rs1518110	A	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	207009910	rs2243170	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	207013432	rs2243181	G	T	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:126,156:0.55:282
chr1	207013487	rs2243182	T	C	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:126,125:0.50:251
chr1	207014472	rs2243188	A	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr1	207015957	rs2243191	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	207040659	rs2232360	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	207072972	rs3093423	A	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	207073832	rs3093427	C	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	207075171	rs291107	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	207076130	rs3093434	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=1.927;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	207083704	.	GGA	G	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-0.342;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr1	207086194	rs749860	T	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	207104813	rs291100	T	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	207106444	rs172361	A	G	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	207106478	rs291102	G	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	207107696	rs908701	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	207107699	rs908700	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	207108191	rs72570603	CAT	C	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	207108228	rs291104	A	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	207110415	rs58368090	T	TC	4177.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr1	207110888	rs291097	G	A	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	207110936	rs291096	T	C	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	207111257	rs291095	G	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	207114037	rs291090	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	207132345	rs7556372	A	G	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	207135546	rs1572808	G	A	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	207135991	rs11119925	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	207141076	.	G	A	358.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	207143422	rs1856746	A	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	207195610	rs61743516	T	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr1	207195735	rs6693011	C	T	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr1	207195779	rs2842726	A	G	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	207196253	rs34858608	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:164,100:0.38:264
chr1	207196337	rs12062114	T	C	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:278,180:0.39:458
chr1	207196544	rs144941234	C	T	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:117,148:0.56:265
chr1	207196639	rs34660159	T	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:171,115:0.40:286
chr1	207196790	rs35299018	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr1	207200958	rs74152404	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,35:0.33:107
chr1	207223940	rs3123024	C	T	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:121,120:0.50:241
chr1	207224406	rs115936855	G	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr1	207225647	rs116572563	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:123,41:0.25:164
chr1	207235159	rs2808459	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	207235204	rs2808460	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	207236524	rs2629639	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:64,68:0.52:132
chr1	207237233	.	G	GGT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.946;QD=5.16;ReadPosRankSum=-0.562;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	207240818	rs139506084	AT	A	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.528;QD=3.22;ReadPosRankSum=0.589;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:61,27:0.31:88
chr1	207241440	rs4030464	AGT	A	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.341;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr1	207241487	rs2808463	A	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-2.070;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:73,56:0.43:129
chr1	207243851	rs923109	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	207244805	rs17020177	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr1	207245045	rs11120137	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr1	207245057	rs12084230	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr1	207262980	rs12711513	T	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	207263539	rs11120184	C	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	207263660	rs148205272	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.560;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	207269778	rs55779122	G	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	207269825	rs55928277	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	207269919	rs8942	C	T	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr1	207286467	rs116810489	C	G	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr1	207286580	rs74365350	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr1	207287481	rs17020956	C	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr1	207287661	rs56180080	C	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	207297466	rs2842706	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr1	207297484	rs2842707	G	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	207297680	rs1126618	T	C	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	207300259	rs2491393	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr1	207304900	rs4844573	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	207305069	rs6663608	A	C	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	207314356	rs12091603	A	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.80;ReadPosRankSum=-1.616;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	207498137	.	T	TG	515.73	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	207499963	rs144336347	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	207504669	.	G	T	406.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	207509979	rs143544291	G	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	207510289	rs2490257	T	C	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	207510633	rs142699191	T	C	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:162,211:0.57:373
chr1	207512577	rs10641442	T	TTAA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	207523458	rs140905614	G	C	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,120:0.49:244
chr1	207532861	rs56253023	C	CT	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.108;QD=6.16;ReadPosRankSum=1.045;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr1	207646322	rs1048971	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	207646462	rs17615	G	A	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr1	207646898	rs4308977	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr1	207646923	rs17616	G	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:62,99:0.61:161
chr1	207647339	rs9429775	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr1	207649698	rs147451324	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr1	207651485	rs74151009	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	207653395	rs17617	C	A	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	207679307	rs4844600	A	G	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	207739326	rs368801590	G	A	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.364;QD=10.84;ReadPosRankSum=0.357;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:173,202:0.54:375
chr1	207753831	.	C	CT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.590;QD=2.07;ReadPosRankSum=-0.419;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:57,22:0.28:79
chr1	207754005	rs145502282	G	A	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr1	207757936	rs646817	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr1	207758232	rs1752688	A	G	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:158,145:0.48:303
chr1	207782856	rs17047660	A	G	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:122,89:0.42:211
chr1	207782889	rs17047661	A	G	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,84:0.44:190
chr1	207782916	rs4844609	A	T	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	207782931	rs6691117	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,74:0.49:151
chr1	207784968	rs3818361	A	G	10882.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	207791358	.	A	T	887.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr1	207795320	rs2296160	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.98;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	207888739	rs7553211	G	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,75:0.52:143
chr1	207941191	rs2724374	G	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr1	207956559	rs1962149	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=1.834;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	207959122	.	CTTTT	C,CTTT	401.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:11
chr1	207959136	.	T	TAAA	401.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	207975949	rs56075814	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	207992546	rs12123251	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr1	208040927	rs78477968	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,85:0.49:172
chr1	208050391	rs113678259	T	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:70,86:0.55:156
chr1	208061530	rs2235766	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr1	208062260	rs2745952	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr1	208062471	rs2073070	A	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr1	208063067	rs2179634	G	A	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.502;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:56,93:0.62:149
chr1	208063100	rs5780411	G	GA	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.973;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:26,54:0.68:80
chr1	208070983	rs41274812	C	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr1	208207839	rs3736963	G	A	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	208208034	rs12128144	G	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr1	208208124	rs6540448	C	A	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	208211887	rs905100	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	208212131	rs114972723	T	A	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.404;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:99,98:0.50:197
chr1	208213125	rs1751580	A	G	6758.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	208218377	rs186809554	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr1	208218392	rs201685586	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr1	208219164	rs1536471	A	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	208252489	rs2274445	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	208255877	rs6540453	T	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr1	208276399	rs10654695	C	CCTCT	1895.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,50:0.33:151
chr1	208390086	rs1664227	G	C	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:202,180:0.47:382
chr1	208390469	rs3748735	C	T	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:155,224:0.59:379
chr1	208391254	rs2782948	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr1	209605636	.	T	TAGC	2087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.126;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:142,68:0.32:210
chr1	209778737	rs2235455	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	209778771	rs35508847	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr1	209779126	rs11119313	C	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	209779652	rs35498535	T	G	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:79,112:0.59:191
chr1	209781125	rs760833	T	C	6301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.177;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:296,315:0.52:611
chr1	209781417	rs143460578	TACAC	T,TACACAC	530.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	0/1:0.67:24
chr1	209782343	rs11119314	A	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	209782532	rs57076563	A	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.125;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr1	209784663	rs10746421	A	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	209784927	rs2076230	G	T	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	209785011	rs2076226	G	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	209785206	rs11119315	G	A	10983.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	209785957	rs2272879	T	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	209786078	rs2272880	G	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr1	209788703	rs1049607	T	C	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	209792015	rs5780528	A	AC	5943.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	209796341	rs59260335	G	A	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.044;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:58,81:0.58:139
chr1	209799253	rs2179402	A	G	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	209800230	rs2076349	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:145,98:0.40:243
chr1	209800341	rs2076350	C	T	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:190,142:0.43:332
chr1	209800901	rs2229468	A	T	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:296,227:0.43:523
chr1	209802958	rs12567766	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	209803783	rs12568035	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=10.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.16;ReadPosRankSum=-0.118;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	209803942	rs7550377	G	T	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:103,121:0.54:224
chr1	209804095	rs4844863	G	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	209811829	rs2076355	A	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr1	209812063	rs2076357	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	209823354	rs2228339	G	A	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.490;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:161,101:0.39:262
chr1	209849002	rs3817870	T	C	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:88,142:0.62:230
chr1	209849399	rs3830766	AG	A	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr1	209849406	rs1473683	T	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	209880508	rs58182526	GA	G	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.154;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	209905734	rs932335	G	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr1	209933331	rs6685077	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	209933540	rs2076150	A	G	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr1	209933757	rs6696463	G	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	209935735	rs191955175	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	209935778	rs10489342	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	209936466	rs7548219	A	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	209936571	rs6540555	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	209936631	rs6540556	G	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	209936914	rs17015169	C	T	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	209936964	rs34406510	T	TCA	2959.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	209950681	rs649275	T	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	209950760	rs669694	C	G	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr1	209952865	rs623360	C	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	209974528	rs35878470	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.124;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	210001586	rs616227	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	210003388	rs599663	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	210003402	rs599649	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	210004199	rs585627	C	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	210006437	rs655712	GC	AT	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	210006603	rs656566	C	T	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr1	210008367	rs685248	C	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.17;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	210008673	rs686582	T	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	210012102	rs1962735	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	210015568	rs10570454	GCT	G	2650.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	210329322	.	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-1.709;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	210406940	rs624270	T	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	210407031	rs624706	G	T	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	210407329	rs36086035	GT	G	735.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.03;ReadPosRankSum=-1.405;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	210407339	rs34824193	T	A	743.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.42;ReadPosRankSum=-1.570;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr1	210414871	rs67121079	G	GT	150.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.230;QD=13.70;ReadPosRankSum=-1.139;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	210502520	rs113095614	T	TA	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr1	210522540	.	A	G	98.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.49;ReadPosRankSum=-0.431;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	210536025	rs7527939	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	210536078	rs2294848	C	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	210560647	rs2273009	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	210560682	rs3215543	A	AAT	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	210577873	rs2066721	G	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr1	210591742	rs3215542	TG	T	1052.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr1	210638069	rs41388951	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=-0.971;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	210686570	rs4545340	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	210761462	rs4297293	G	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	210847514	rs1934615	A	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	210847740	rs4366378	A	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	210856585	rs3135473	G	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	210857457	rs1135317	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	211264142	rs112147851	G	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	211280724	.	T	TA	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=4.000;QD=3.64;ReadPosRankSum=-0.277;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:109,56:0.34:165
chr1	211380500	rs12072778	G	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.870;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	211380722	rs12083429	C	T	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:132,127:0.49:259
chr1	211380770	rs7525401	T	C	10410.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.36;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	211452529	rs10708960	TA	T	202.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=59.12;MQRankSum=-0.374;QD=10.68;ReadPosRankSum=-0.067;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	211527609	rs7530570	C	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	211565114	rs73072817	C	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr1	211652472	rs149051185	T	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:110,71:0.39:181
chr1	211836789	rs12031285	T	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr1	211840498	rs2230489	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr1	211846876	rs701929	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr1	212120045	rs41275374	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr1	212125827	rs77908158	G	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr1	212139871	rs78568869	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr1	212142054	rs11322485	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.962;QD=5.63;ReadPosRankSum=-1.459;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr1	212151984	rs76720094	A	G	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	212193353	rs74399092	A	T	138.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	212208816	rs78585757	C	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,52:0.44:118
chr1	212217944	.	G	GA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-1.749;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	212217971	rs35704923	C	CTT	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.560;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	212220847	rs2970592	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	212236157	rs4951436	G	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr1	212240063	rs3738449	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	212240257	rs17018418	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.634;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:111,53:0.32:164
chr1	212241714	rs35528691	T	TA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=2.127;QD=5.32;ReadPosRankSum=-0.030;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr1	212245648	rs17018435	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	212251103	rs6658972	A	G	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	212251366	rs377316720	TG	T	85.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	212251367	rs5780675	GT	G	164.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	212273639	rs3135474	C	T	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	212274413	rs6540718	A	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	212506828	rs111478057	T	C	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:174,118:0.40:292
chr1	212520545	rs114425966	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	212521639	rs701908	T	G	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	212526288	rs792442	C	T	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	212530192	rs792439	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	212558942	rs188520402	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=1.531;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	212560327	rs792449	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	212615875	rs521469	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	212616080	rs150643811	C	CATTTT	40.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,2:0.50:4
chr1	212617829	rs2275712	C	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr1	212617895	.	GTGTGTGTGTGTGTGTA	G	92.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=0.776;QD=5.80;ReadPosRankSum=-0.016;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	212617897	.	GTGTGTGTGTGTGTA	G	144.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.183;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=-0.728;QD=9.65;ReadPosRankSum=-0.008;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	212619297	rs17019084	G	A	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr1	212619339	rs4804	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	212791296	rs111517706	TG	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.361;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	212791460	rs8192659	A	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.549;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:46,48:0.51:94
chr1	212791621	rs8192660	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	212798977	rs3122712	A	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr1	212799039	rs74138590	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr1	212799092	rs116618584	C	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:73,69:0.49:142
chr1	212799163	rs74138591	C	A	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:127,103:0.45:230
chr1	212799290	rs77264122	C	T	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:168,217:0.56:385
chr1	212799870	rs3122713	A	G	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	212870410	rs2233924	G	A	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:105,141:0.57:246
chr1	212900487	rs2244935	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	212911836	rs15702	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr1	212965149	rs2792559	C	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	212969842	rs11421046	C	CT	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	212970375	rs1284800	A	G	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	212985466	rs12130945	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=0.815;QD=1.81;ReadPosRankSum=-0.971;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	212988555	rs61240905	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr1	213009178	rs369495200	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.422;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	213009469	rs10864004	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr1	213037244	rs2252377	A	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	213056819	rs2644547	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	213068192	rs2792558	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	213139435	rs116486072	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	213139561	rs57434622	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr1	213139748	rs3738805	T	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr1	213146944	rs7511930	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	213161709	rs144114779	A	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-1.037;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr1	213180379	rs112003433	T	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	213224719	rs4951476	T	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	2013.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	213416080	rs74953495	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr1	214171624	rs74139075	C	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr1	214491536	rs55760458	G	C	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	214492286	rs1134647	G	A	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	214497861	rs6695148	G	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	214500907	rs17022608	A	C	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	214504604	rs2270704	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	214542668	rs3002311	T	C	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	214542819	rs1135352	T	C	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	214546213	rs13343111	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:86,50:0.37:136
chr1	214549699	rs80056850	T	C	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,82:0.54:152
chr1	214551276	rs3013451	G	A	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	214557685	rs12239356	C	A	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:246,192:0.44:438
chr1	214558228	rs3013446	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	214560051	rs12058304	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	214564191	rs12729692	A	C	2672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.633;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:97,132:0.58:229
chr1	214564340	rs7550799	T	C	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	214564442	rs11120307	C	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	214566845	rs7355212	A	G	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	214566952	rs4655342	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr1	214567013	rs11322819	CG	C	2790.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr1	214571251	rs11580603	A	C	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.181;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:103,121:0.54:224
chr1	214625431	rs7355177	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.46;ReadPosRankSum=-0.842;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	214638172	rs10864100	C	T	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	214778928	.	CG	C	43	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=5;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=43;QD=37.0;SC=CTGGGCCGCCCGGGGGTCCAC;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=214778936;WS=214778918;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	214793868	rs59561763	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.56;ReadPosRankSum=-0.349;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	214795454	rs17023281	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.437;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr1	214811244	rs2070065	C	G	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.979;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:56,77:0.58:133
chr1	214816224	rs2666839	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr1	214816718	rs17023341	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr1	214818223	rs3748693	T	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr1	214825289	.	C	CT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.259;QD=4.97;ReadPosRankSum=0.559;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr1	214826196	rs335524	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.281;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr1	214826364	rs335523	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.917;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	214826766	rs76986440	C	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:74,110:0.60:184
chr1	214826777	rs59832872	TCTC	T	2723.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:115,74:0.39:189
chr1	214826809	rs60427464	ACT	A	852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=3.687;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:114,53:0.32:167
chr1	214828812	rs435043	A	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr1	214830617	rs438034	A	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:163,104:0.39:267
chr1	214837110	rs7289	C	G	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr1	215342573	rs17024342	C	T	1824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=2.244;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:112,98:0.47:210
chr1	215345263	rs3834061	GTCTCTC	G	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.663;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	215408057	rs11120527	G	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	215791606	rs79868024	A	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	215793834	rs14137	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr1	215848641	rs2797235	T	C	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:141,182:0.56:323
chr1	215853748	rs5780842	GT	G	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.187;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr1	215901492	rs2820718	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,77:0.66:117
chr1	215901531	rs61635304	T	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr1	215901702	rs56053654	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.490;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	215916713	.	C	CATATATATAT	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.06;ReadPosRankSum=-0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	215916744	.	G	GTATATA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.371;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	215916746	.	G	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.81;ReadPosRankSum=-1.486;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	215916754	.	G	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.27;ReadPosRankSum=-0.415;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	215916756	rs376300286	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.27;ReadPosRankSum=-0.415;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	215916758	rs377724243	G	A	329.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.46;ReadPosRankSum=1.615;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr1	215956304	rs7518466	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	215960167	rs10864198	T	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	215986990	rs73090717	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr1	216172106	rs28588034	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	216172127	rs145795785	A	G	508.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.254;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr1	216172128	rs372275979	CT	C	673.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=0.447;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	216172299	rs79444516	C	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr1	216172454	rs11804374	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	216219781	rs6657250	A	G	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	216270585	rs148294837	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr1	216348764	rs1805049	C	T	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	216370130	rs386851	T	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	216390694	rs1324330	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr1	216405193	rs142795742	C	CA	58.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	216465459	.	A	G	1134.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr1	216592003	rs4253963	T	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:144,93:0.39:237
chr1	216595306	rs10779261	C	T	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	216679807	rs11117604	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.97;ReadPosRankSum=0.847;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	216680248	.	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-1.803;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	216692669	rs945453	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-1.353;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:58,65:0.53:123
chr1	216692741	rs10863247	C	T	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr1	216850409	rs6691085	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.089;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	217604777	rs7520483	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	217783810	rs12749938	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.78;ReadPosRankSum=0.210;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	217804325	rs944730	G	A	7562.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:488,397:0.45:885
chr1	217804635	rs34121469	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	217856787	rs71301099	A	AT	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=2.253;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	217947738	rs6604561	G	A	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	217947896	rs75977965	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr1	218036237	rs6658846	T	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=2.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	218458551	rs946213	T	C	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	218458557	rs3831934	AG	A	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr1	218519928	rs113711540	A	AAAAC	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	218578726	rs142802402	ACT	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.259;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr1	218683417	.	CT	C	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.094;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	218698632	rs36034473	CG	C	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	218698641	rs11805322	C	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	219366400	rs35359058	T	TG	414.14	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr1	219383834	rs372678957	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.676;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	219383848	rs5781096	A	ACTTTTT	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	219383867	rs940571	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	219383905	rs940570	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	219706428	rs10746385	T	C	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:239,266:0.53:505
chr1	219706568	rs56928501	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr1	219783147	rs200056014	A	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:126,66:0.34:192
chr1	219783279	rs79789352	T	A	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:58,138:0.70:196
chr1	219784536	.	G	A	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-6.653;QD=6.34;ReadPosRankSum=0.011;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:77,47:0.38:124
chr1	219784602	.	G	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-3.939;QD=9.71;ReadPosRankSum=0.329;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	219785087	.	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-5.311;QD=2.25;ReadPosRankSum=1.274;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr1	220142023	rs1061248	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.48;ReadPosRankSum=-1.221;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	220142070	rs1061242	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr1	220145371	rs2795315	T	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	220145584	rs1982986	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr1	220145655	rs1982984	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	220151808	rs3215088	C	CAA	848.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr1	220153332	rs34917248	T	TAA	3732.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	220154246	rs35193743	AT	A	1064.70	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:11,67:0.86:78
chr1	220154659	rs10595099	TAAA	T	2985.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;QD=31.10;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:2,94:0.98:96
chr1	220154768	rs1061160	C	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:333,205:0.38:538
chr1	220156090	rs2647462	T	C	9298.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	220156427	rs1391566	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	220156704	rs5030752	T	C	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=2.234;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:93,47:0.34:140
chr1	220156729	rs5030754	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr1	220160360	rs2647435	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr1	220160433	rs2647434	A	G	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	220161859	rs2291838	C	G	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.323;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr1	220162004	rs36122746	C	T	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.159;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:169,105:0.38:274
chr1	220162195	rs2254494	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr1	220170238	rs41304103	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,75:0.45:165
chr1	220178717	rs5781162	T	TA	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	220180814	rs78586233	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	220184164	rs28570471	A	G,AG	1201.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.06;SOR=3.334;set=HC	GT:AD:AF:DP	1/2:0,8,22:0.27,0.73:30
chr1	220192495	rs2245457	C	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	220197545	rs2577159	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	220197625	rs2230301	G	T	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	220205714	rs149359255	G	GA	730.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr1	220205943	rs2789816	G	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	220205980	rs2577138	A	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	220207017	rs2647456	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	220208154	rs2789817	C	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	220247273	rs372564231	C	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=1.575;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	220311283	rs141475516	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr1	220355433	rs11343960	CT	C	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	220362857	rs35162828	AT	A	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=1.732;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	220379361	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=2.597;QD=3.06;ReadPosRankSum=0.077;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	220406054	rs12086760	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr1	220406291	rs10863538	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	220427661	rs28650887	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:296,194:0.40:490
chr1	220603288	.	A	AGTGTGTGT	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=2.121;QD=17.92;ReadPosRankSum=1.128;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr1	220603314	rs6675649	A	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr1	220607523	rs74139667	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.088;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	220607524	rs74139668	A	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.088;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	220607572	rs74139669	G	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-2.984;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr1	220607891	rs1338767	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr1	220702361	rs192328438	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	220808666	.	CTTT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.14;ReadPosRankSum=-0.094;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	220808921	rs10746403	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	220825523	rs3737296	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	220922198	rs138903778	C	CG	508.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	220927511	rs1690716	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.52;ReadPosRankSum=-1.602;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	220957371	rs60301504	G	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,69:0.46:151
chr1	220965086	rs3738177	G	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr1	220970028	rs2642438	A	G	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	220971339	rs3738178	T	A	3322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.065;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:214,178:0.45:392
chr1	220982320	rs34579579	CA	C	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.553;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr1	220986516	rs12144830	C	G	390.96	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr1	221055463	rs2247213	G	A	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:146,152:0.51:298
chr1	221057646	rs2738755	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr1	221058059	rs2738756	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr1	221507141	rs7555947	C	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	221507261	rs12087664	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:123,82:0.40:205
chr1	221876126	rs2280340	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	221879561	rs115069867	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,84:0.56:149
chr1	221912361	rs1141714	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr1	222705270	rs4846373	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	222705546	rs17163175	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	222713501	rs3748663	C	A	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr1	222713621	rs3748665	C	T	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	222713750	rs3828079	G	A	346.89	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr1	222721288	rs4846382	C	T	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	222736498	rs11485180	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	222736778	rs11487813	T	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	222737265	rs35877231	G	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	222737568	rs3008640	C	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	222743062	rs1874809	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	222791440	rs376169786	A	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.945;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	222798106	rs3008617	G	A	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	222802006	rs2936053	A	G	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	222802376	rs2936052	A	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:125,128:0.51:253
chr1	222802926	rs3008620	C	T	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:104,126:0.55:230
chr1	222803204	rs2936051	A	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:60,87:0.59:147
chr1	222803831	rs3748629	G	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	222805698	rs3008622	T	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr1	222825403	rs3002150	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	222825761	rs2936019	G	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	222833194	rs114523343	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr1	222833601	rs3002153	T	C	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	222837594	rs2270707	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	222837608	rs79024999	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	222838216	rs2936026	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	222860734	rs3008638	C	T	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	222886119	rs3811465	A	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:167,135:0.45:302
chr1	222900373	rs10495200	G	C	69.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	222903122	.	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.108;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	222919854	rs111682421	CCT	C	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	222923351	rs6683071	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.745;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	223116109	rs75109669	C	T	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr1	223116351	rs140230946	C	G	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:307,236:0.43:543
chr1	223116472	rs2609383	G	A	6474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.36;ReadPosRankSum=1.520;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:152,166:0.52:318
chr1	223116472	.	GAG	AAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=27;MQ=60.0;NF=49;NR=53;PP=2944;QD=20;SC=GTGCCATCCCGAGGCTGGCCC;SbPval=0.44;Source=Platypus;TC=201;TCF=102;TCR=99;TR=102;WE=223116482;WS=223116462;set=Platypus	GT:AD:AF:DP	1/0:99,102:0.51:201
chr1	223116474	rs2789975	G	T	6474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=1.380;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:150,166:0.53:316
chr1	223152868	rs1815607	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	223156382	rs2926159	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	223156406	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.429;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	223168213	rs2609359	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	223177574	rs2609355	A	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr1	223178520	rs61746480	G	A	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:248,181:0.42:429
chr1	223283910	rs7512943	A	G	7128.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	223285946	rs5744167	T	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr1	223394228	rs3768284	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	223396880	rs851150	G	A	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:186,198:0.52:384
chr1	223397037	rs851149	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	223397054	rs77269074	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr1	223401113	rs851142	C	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr1	223532570	rs1547788	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr1	223536702	.	T	TTGC	4119.73	.	AC=1;AF=0.500;AN=2;DP=405;set=Intersection	GT:AD:AF:DP	0/1:151,199:0.57:350
chr1	223712821	rs115807660	T	C	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.726;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:148,99:0.40:247
chr1	223715248	rs36108579	GT	G	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr1	223716349	rs4072246	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,67:0.50:135
chr1	223717379	rs61823524	A	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	223717484	rs34158997	G	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:114,73:0.39:187
chr1	223718518	rs61823552	C	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.590;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	223718651	rs61823553	G	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.822;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:99,71:0.42:170
chr1	223718670	rs61823554	G	A	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.550;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:96,69:0.42:165
chr1	223718793	rs72747903	G	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	223722780	rs34606532	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chr1	223728083	rs202073012	A	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.97;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	223799857	rs34786756	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	223799871	rs35116708	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:93,51:0.35:144
chr1	223805961	rs73119734	A	G	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.465;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:30,44:0.59:74
chr1	223813586	rs35539373	G	T	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	223814671	rs61825208	A	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	223815575	rs34187970	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	223816322	rs66602040	A	G	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	223816347	rs61825210	A	G	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	223830348	rs73125697	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	223900252	rs138727686	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	223900408	rs25655	C	G	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	223931648	rs1222137	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	223932894	rs12069561	C	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	223933079	rs17598	C	T	3395.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:127,164:0.56:291
chr1	223934720	rs17600	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr1	223938565	rs1153968	A	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	223938688	rs114174241	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr1	223939594	rs28370078	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	223944173	rs1153957	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	223954016	rs9970756	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	223959498	rs16842168	C	G	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.426;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:93,88:0.49:181
chr1	223959796	rs1153950	G	A	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr1	223980207	rs1153936	G	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	223987811	rs114383697	G	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr1	223989738	rs60245976	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	223989966	rs1153933	C	T	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr1	224008913	rs3738370	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	224302021	.	C	G	3507.77	.	AC=1;AF=0.500;AN=2;DP=342;set=Intersection	GT:AD:AF:DP	0/1:159,177:0.53:336
chr1	224302154	rs3066024	T	TGAG	2372.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr1	224318151	rs3065998	T	TTTG	593.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	224321984	rs1472167	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	224345012	rs7543762	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	224363674	rs200913375	C	CT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.506;QD=0.85;ReadPosRankSum=1.577;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:98,28:0.22:126
chr1	224363683	rs45522536	C	T	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.700;QD=8.63;ReadPosRankSum=0.305;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:92,43:0.32:135
chr1	224444628	rs10799556	C	T	4167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-1.677;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:198,209:0.51:407
chr1	224444901	rs2897055	G	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	224468816	rs7531588	A	G	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.596;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	224468986	.	CGTGTGT	CGT,CGTGT,C	473.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=22;set=Intersection	GT:AF:DP	1/2:0.62,0.38:16
chr1	224473849	rs16846031	A	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr1	224484350	rs16846212	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr1	224484410	rs16846214	C	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	224488315	rs16846339	T	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,70:0.58:121
chr1	224489368	.	G	T	249.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	224492381	rs7522125	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	224500791	rs7524485	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr1	224500874	.	A	AC	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=64.64;MQRankSum=-2.450;QD=5.59;ReadPosRankSum=2.450;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	224505271	rs116188421	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	224505570	rs3066969	T	TAA	1386.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	224514275	rs4653578	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	224517842	rs2896990	C	T	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:63,100:0.61:163
chr1	224548374	rs1857042	C	T	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	224581681	rs35958886	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr1	224585958	rs7522956	A	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr1	224586334	rs73125526	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr1	224588825	rs7518109	T	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	224600910	rs10916612	C	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=41.90;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	224600920	rs10916613	C	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	224606249	rs10495219	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	224621368	rs2405033	G	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	224805112	rs1532557	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr1	224805153	rs7534595	G	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	225117103	rs77830950	T	G	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:179,169:0.49:348
chr1	225117222	rs2501079	G	A	9641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;ClippingRankSum=0.000;DB;DP=1135;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-2.636;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:625,497:0.44:1122
chr1	225117280	rs12090519	C	T	7597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-1.810;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:299,366:0.55:665
chr1	225117561	rs2501078	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-2.890;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	225147784	rs12093545	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	225147810	rs2449317	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	225148112	rs150480647	C	CT	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	225152354	rs149369758	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.68;ReadPosRankSum=0.431;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	225155114	rs2501155	A	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-1.561;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	225162060	rs10915751	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	225238097	.	C	T	284.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr1	225270475	rs7525497	G	T	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.11;ReadPosRankSum=0.241;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	225270475	.	GA	TT	46	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=46;QD=33.1559582874;SC=AAAATAGGTTGAAATACCAGA;SbPval=0.57;Source=Platypus;TC=4;TCF=1;TCR=3;TR=3;WE=225270484;WS=225270465;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	225270476	rs7515136	A	T	175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.11;ReadPosRankSum=0.241;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	225305529	rs12080062	C	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr1	225328426	rs11805350	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	225335028	rs71657759	A	AT	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	225339745	rs78335375	C	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	225341687	rs16844377	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr1	225346975	rs1480101	C	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr1	225380623	rs114945420	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.921;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	225393587	rs12097990	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	225439988	rs630120	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	225445652	rs670255	G	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr1	225460626	rs656649	T	A	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	225465300	rs117126123	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.09;ReadPosRankSum=0.319;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	225477807	rs2036497	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	225525864	rs56918103	C	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	225528183	rs3856145	C	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	225533684	rs6667999	A	G	2202.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=11.677;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=-0.537;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:3,96:0.97:99
chr1	225534219	rs7527925	T	C	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	225534324	rs73136911	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	225534348	rs7535953	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	225541372	rs6676935	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	225545301	rs142111235	A	AATATGTGATAT	83.25	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	225545580	rs12745950	A	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	225552624	rs10495239	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	225552650	rs12563830	C	T	150.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	225601731	.	T	C	2976.77	.	AC=1;AF=0.500;AN=2;DP=411;set=Intersection	GT:AD:AF:DP	0/1:228,165:0.42:393
chr1	225611661	rs1056607	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr1	225611845	rs1340867	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	225685621	rs145776060	TAAG	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	225707104	rs374911786	G	A	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:131,118:0.47:249
chr1	225965803	rs3738037	C	A	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr1	226016381	rs41266229	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	226016397	rs41266231	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr1	226016575	rs2234697	C	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr1	226019774	rs2260863	G	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	226027067	rs35708670	G	GGTGT	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=60.70;ReadPosRankSum=-1.111;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	226027569	rs35561387	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr1	226032018	rs56301120	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	226032896	rs2234700	T	C	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr1	226032979	rs45550332	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr1	226036309	rs360063	A	G	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	226044489	rs60955535	G	GC	1069.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	226044766	rs9919303	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	226053805	rs7515156	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	226054208	.	G	T	708.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	226054681	rs360085	T	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	226054714	rs2292563	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	226055595	rs2292564	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	226075558	rs191758097	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	226108200	rs73131849	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	226125543	rs60825997	G	GA	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	226127443	rs74578461	G	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	226128564	rs73131854	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr1	226178797	.	A	G	341.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	226180816	rs61170616	C	CT	144.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.612;QD=9.02;ReadPosRankSum=-1.738;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	226252232	rs2036870	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	226253316	rs1849032	G	T	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	226253688	rs116389985	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	226334578	rs1219666	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	226353776	rs78902019	C	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	226411539	.	G	C	988.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr1	226438449	rs6678137	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	226485327	rs11390947	A	AT	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	226550741	rs747659	C	T	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	226553481	.	A	AAAAC	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.83;ReadPosRankSum=-1.760;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	226553485	rs118165556	A	C	70.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.450;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=1.285;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	226553486	rs146042055	C	A	601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	226553490	rs34917861	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=1.285;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	226553492	.	AAC	A	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.219;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.83;ReadPosRankSum=-1.296;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	226553494	rs11378196	C	CA	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.301;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=1.296;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	226556094	rs1805400	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	226566726	rs907190	A	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	226567008	rs732284	C	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr1	226567563	rs2271343	C	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	226570840	rs1805415	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	226573364	rs1805414	A	G	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	226573402	rs1805408	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr1	226576296	rs2293464	G	A	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	226580021	rs1805405	G	T	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	226580093	rs2280712	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	226589709	rs2666428	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	226589833	rs1805407	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	226923505	rs708776	G	T	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	226923938	rs6667260	A	C	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	227068398	rs111567390	G	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:3,199:0.99:202
chr1	227068472	rs79540408	G	A	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr1	227069677	rs11405	T	C	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	227069779	rs76655190	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	227071703	rs12057618	A	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	227073410	rs2236910	G	C	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	227078955	rs2802267	T	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	227078995	rs6426553	G	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:89,57:0.39:146
chr1	227079301	rs7537037	G	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	227081622	rs10753428	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	227085462	rs1800672	T	C	11280.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	227085646	rs1800673	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	227165097	rs3806263	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr1	227170768	rs2256060	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	227171738	.	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=4.614;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.071;QD=10.94;ReadPosRankSum=-0.069;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr1	227172516	rs76831370	C	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr1	227182033	rs2802269	G	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	227182575	rs1045247	A	G	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	227216662	rs1929861	T	C	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:120,136:0.53:256
chr1	227216775	rs1929860	C	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:116,166:0.59:282
chr1	227218069	rs5781458	C	CAT	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	227218986	rs16846848	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr1	227221239	rs41268739	A	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-1.440;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr1	227221251	rs12031609	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr1	227222515	rs113874316	G	GACAA	7019.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	227227740	rs12026688	A	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	227239746	rs10799381	G	T	59.10	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	227246890	.	C	CA	68	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=10;HapScore=2;MGOF=1;MMLQ=22;MQ=60.2;NF=6;NR=2;PP=68;QD=10.0;SC=CGGCCAAAGCCAAAAAAAAAA;SbPval=0.64;Source=Platypus;TC=27;TCF=20;TCR=7;TR=8;WE=227246898;WS=227246880;set=Platypus	GT:AD:AF:DP	1/0:19,8:0.30:27
chr1	227261520	rs16846968	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	227268488	rs1929853	T	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr1	227288655	rs2104863	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	227299978	rs2458521	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr1	227300277	rs488104	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	227330759	rs12139502	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:79,58:0.42:137
chr1	227335329	rs6685954	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	227381326	.	C	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=4;HapScore=2;MGOF=13;MMLQ=25;MQ=60.0;NF=3;NR=0;PP=21;QD=18.5904041824;SC=CAAATAATAACAACAACAAAG;SbPval=1.0;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=227381334;WS=227381324;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	227381373	rs3768436	G	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr1	227381674	rs35780410	TA	T	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	227387143	rs3768435	A	G	73.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	227387361	rs3768434	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr1	227400792	rs1513612	A	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	227504794	rs11804613	T	C	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:145,165:0.53:310
chr1	227834233	rs78467777	TC	T	5959.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:16,257:0.94:273
chr1	227920061	rs1060295	T	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	227922640	.	T	C	21	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=16;MQ=60.0;NF=2;NR=3;PP=21;QD=11.1542425094;SC=TGCCCCTCTCTAGGCGGGGGC;SbPval=0.72;Source=Platypus;TC=18;TCF=8;TCR=10;TR=5;WE=227922648;WS=227922630;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr1	227922918	rs2295994	A	C	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.383;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:164,116:0.41:280
chr1	227923081	rs7419238	G	A	9362.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	227935280	rs2236361	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	227935355	rs2236360	T	C	7418.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr1	227935444	rs2236359	A	G	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:225,164:0.42:389
chr1	227935762	rs2236358	G	A	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr1	227946628	rs201752039	C	CA	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	227968107	rs10799448	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	228003676	rs75865065	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr1	228003967	rs12121588	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:80,92:0.53:172
chr1	228033128	rs76957354	A	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	228033197	rs9426581	A	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr1	228112121	rs4653889	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr1	228113163	rs3795768	A	G	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	228129197	rs631768	T	C	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-1.197;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:24,51:0.68:75
chr1	228284991	rs2070960	C	T	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:100,154:0.61:254
chr1	228294300	rs12564763	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr1	228333652	rs11577976	G	A	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,113:0.54:211
chr1	228335125	rs1803695	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.159;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:32,53:0.62:85
chr1	228351877	rs13374714	T	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr1	228352160	rs4348717	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	228353781	rs13375853	C	G	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:88,103:0.54:191
chr1	228362306	rs74931164	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr1	228399482	rs11804508	C	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	228399671	rs117484136	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:69,146:0.68:215
chr1	228399766	rs55971985	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	228400646	rs3121192	T	C	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	228400653	rs3121191	A	T	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	228402047	rs1620111	A	G	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	228402121	rs1771487	A	G	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	228404547	rs10157758	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.20;ReadPosRankSum=0.876;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	228404668	rs3795777	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr1	228405118	rs5781507	G	GA	300.90	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	228412106	rs1771482	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr1	228412227	rs1771480	T	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr1	228412308	rs1757152	G	A	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:68,122:0.64:190
chr1	228412537	rs16848404	G	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:41,102:0.71:143
chr1	228431095	rs1771455	A	G	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	228431930	rs10916293	C	T	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	228432323	rs12077365	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	228433217	rs2487384	A	G	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	228433346	rs75801409	C	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:55,95:0.63:150
chr1	228434395	rs7517088	T	C	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	228434467	rs7517108	T	C	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	228437603	rs6426494	T	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	228437772	rs12080655	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr1	228438045	rs12737540	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr1	228444318	rs7532144	T	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.71;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	228444565	rs7532342	T	A	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	228444741	rs3795780	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	228447432	rs74142677	T	G	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:176,135:0.43:311
chr1	228451826	rs453140	C	T	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	228452032	rs55706639	G	A	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:71,94:0.57:165
chr1	228456147	rs878388	T	C	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	228456159	.	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:139,96:0.41:235
chr1	228461129	rs1188724	A	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	228461381	rs61825280	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	228461408	rs11398292	A	AG	2170.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	228463433	rs510931	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	228464248	rs1188721	T	G	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	228464276	rs1188722	T	C	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	228464842	rs936885	C	G	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr1	228465370	rs867599	T	G	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	228465403	rs13376694	G	T	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,95:0.55:173
chr1	228467711	rs3795783	G	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr1	228468244	rs12061320	G	A	4713.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:175,235:0.57:410
chr1	228468458	rs1188697	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.234;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr1	228469870	rs3795785	C	T	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr1	228469903	rs3795786	AG	TT	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=8.158;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=-0.927;SOR=1.936;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr1	228470995	rs1150906	G	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr1	228475848	rs437129	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:228,177:0.44:405
chr1	228476366	rs3795789	GA	TT	11927.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;JOINED;set=Intersection	GT:AD:AF:DP	0/1:318,310:0.49:628
chr1	228476414	rs3795791	G	A	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:201,181:0.47:382
chr1	228480282	rs1150908	A	G	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:4,346:0.99:350
chr1	228480964	rs10158357	A	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr1	228482010	rs449133	C	T	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:224,164:0.42:388
chr1	228482285	rs1150909	T	C	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	228486524	rs61825285	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr1	228492044	rs1150910	G	A	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:203,185:0.48:388
chr1	228494382	rs1150911	T	C,G	4220.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=190;set=Intersection	GT:AF:DP	1/2:0.59,0.41:180
chr1	228494696	rs4653939	G	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:64,92:0.59:156
chr1	228495696	rs419173	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	228497053	rs379620	A	G	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	228497286	rs56852844	C	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr1	228503567	rs532984	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr1	228503677	rs1150912	A	G	8628.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=0.259;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:2,342:0.99:344
chr1	228504472	rs1188732	T	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	228504701	rs111792077	G	GCTCC	1263.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	228505204	rs4653942	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:76,119:0.61:195
chr1	228505488	rs114035609	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr1	228505668	rs1188729	C	G	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	228505699	rs1188728	T	C	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	228505727	rs3795800	C	T	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:149,199:0.57:348
chr1	228509093	rs199691296	C	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:63,18:0.22:81
chr1	228509288	rs199529556	C	G	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:175,123:0.41:298
chr1	228509427	rs373610	A	G	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	228520763	rs384553	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	228520880	rs416564	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.486;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr1	228520973	rs369909	C	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr1	228522029	rs57891072	TA	T	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	228522047	rs520552	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	228522472	.	G	A	624.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr1	228523005	rs60787858	T	TG	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	228523042	.	T	TG	57	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=6;HapScore=2;MGOF=108;MMLQ=27;MQ=60.0;NF=1;NR=4;PP=57;QD=16.8;SC=GGCTGGGGCATGGGGGGTGGG;SbPval=0.66;Source=Platypus;TC=5;TCF=1;TCR=4;TR=5;WE=228523050;WS=228523032;set=Platypus	GT:AD:AF:DP	1/0:0,5:1.00:5
chr1	228523412	rs12061733	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	228523442	rs1684868	T	C	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	228523442	.	TGTGCTG	CGTGCCA,CGTGCCG	411	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=19;MQ=60.0;NF=18,37;NR=13,27;PP=341,411;QD=13.047350802;SC=TGGAATCAGATGTGCTGGGGT;SbPval=0.57;Source=Platypus;TC=64;TCF=37;TCR=27;TR=31,64;WE=228523456;WS=228523432;set=Platypus	GT:AF:DP	0/1:0.48:64
chr1	228523447	rs10799473	T	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	228523448	rs1757161	G	A	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.152;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr1	228523618	rs1757160	G	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	228525898	rs1188717	C	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	228526665	rs505629	T	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	228528412	rs1150916	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:208,173:0.45:381
chr1	228528563	rs1188710	C	G	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	228529129	rs3795810	C	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr1	228529429	rs141828109	A	AGACGGCTCAGCCAGCCTGTGGCATGG	841.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	228538470	rs12031395	C	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:87,88:0.50:175
chr1	228538968	rs3795811	C	T	98.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	228539300	rs3795812	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	228543800	rs3795814	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr1	228547256	rs12027720	G	A	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=4.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=1.445;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:86,107:0.55:193
chr1	228548197	rs10158354	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr1	228550426	rs35155240	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr1	228552571	rs541959	T	C	13628.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr1	228553651	rs572442	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	228553675	rs573128	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	228555842	rs61149796	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	228556403	rs35711644	C	T	4726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=0.682;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:181,233:0.56:414
chr1	228558313	rs477699	A	G	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.604;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:67,61:0.48:128
chr1	228559057	rs370128535	G	A	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:113,132:0.54:245
chr1	228559386	rs60919227	G	A	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:471,375:0.44:846
chr1	228559994	rs500049	C	T	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:234,283:0.55:517
chr1	228560139	rs498382	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	228560700	rs512253	T	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:100,103:0.51:203
chr1	228562147	rs140279735	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr1	228563329	rs371198106	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	228564396	rs181211765	C	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:120,64:0.35:184
chr1	228564884	rs56174824	G	A	6176.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:206,298:0.59:504
chr1	228565445	rs3738687	C	A	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr1	228584369	rs144813618	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr1	228588680	rs11555960	A	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr1	228601638	rs472594	T	C	3773.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:141,182:0.56:323
chr1	228602660	rs503203	G	C	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr1	228612838	rs2230656	G	T	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.756;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:147,81:0.36:228
chr1	228613052	rs1188474	T	C	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:150,82:0.35:232
chr1	228645063	rs10916317	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr1	228646263	rs115835359	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:173,78:0.31:251
chr1	228646356	rs150880595	CGTGT	C	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.13;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	228680988	rs61827303	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	228699477	rs6665115	T	C	5018.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:292,253:0.46:545
chr1	228879028	rs190078813	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr1	228879199	rs61732781	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr1	229385669	rs71561726	TTC	T	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.199;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr1	229407233	rs7519709	G	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	229422193	rs237764	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr1	229438828	rs237787	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	229461024	rs2282083	C	T	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:151,117:0.44:268
chr1	229477725	.	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.467;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr1	229568231	rs527621	T	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	229599439	rs16849788	A	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.700;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr1	229602284	rs7555749	C	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr1	229611318	rs11800554	A	G	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.711;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr1	229611555	rs11805314	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	229622162	rs1065675	A	G	4406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.112;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:188,212:0.53:400
chr1	229623137	rs4925493	T	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr1	229623338	rs1065674	T	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,97:0.60:162
chr1	229631193	rs3818237	T	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.71;ReadPosRankSum=0.718;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	229631324	rs74420358	T	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.470;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr1	229631673	rs149125926	C	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr1	229631734	rs11805194	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr1	229635083	rs10916494	T	C	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	229636388	rs6673421	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	229636561	rs75411588	C	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:53,91:0.63:144
chr1	229637645	rs754022	C	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	229663064	rs113712941	GAGGAA	G	3924.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	229683264	rs3738187	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	229694149	rs138947511	A	G	146.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	229730794	rs10218432	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:85,75:0.47:160
chr1	229738170	rs3753886	T	G	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:106,75:0.41:181
chr1	229738236	rs4925500	G	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	229746019	rs2273573	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chr1	229768297	rs1473719	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.465;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	229771764	rs80089474	G	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,86:0.55:157
chr1	229772693	rs3811473	T	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:105,67:0.39:172
chr1	229772932	rs3811474	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:89,65:0.42:154
chr1	229773441	rs3811475	C	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:146,80:0.35:226
chr1	229781744	rs2274994	T	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,92:0.46:201
chr1	229783236	rs6587349	T	C	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	229783236	.	TTATT	CTATC,CTATT	533	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=23,47;NR=14,26;PP=533,509;QD=15.8504831044;SC=CATTTTTCCTTTATTTTATTT;SbPval=0.46;Source=Platypus;TC=73;TCF=47;TCR=26;TR=37,73;WE=229783248;WS=229783226;set=Platypus	GT:AF:DP	0/1:0.51:73
chr1	229783240	rs2274995	T	C	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=2.963;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:59,54:0.48:113
chr1	229790048	rs7521953	A	G	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:142,97:0.41:239
chr1	229795070	rs1048306	T	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr1	230313911	rs678050	T	C	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	230371883	rs3811488	G	A	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	230384937	rs3748006	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr1	230384970	rs1923950	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr1	230386174	rs2273965	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.760;SOR=1.592;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	230386341	rs2273966	T	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr1	230390956	rs58148281	C	T	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:171,140:0.45:311
chr1	230391256	rs41304127	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	230415025	rs6698963	A	G	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	230415244	rs2273968	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	230451935	rs144363709	C	CAT	961.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.09;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	230451978	rs11122492	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.89;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	230459433	rs35048134	GC	G	176.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	230459476	rs12083735	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	230497940	rs828479	G	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr1	230498232	rs2820384	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	230503684	rs2632571	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr1	230503720	rs74143202	A	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr1	230513128	rs828463	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	230778243	rs11361885	AC	A	883.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr1	230778491	rs4846864	G	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	230795177	rs1359866	T	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	230796375	rs3736982	A	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	230796533	rs16852160	T	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:140,118:0.46:258
chr1	230819479	rs5781597	G	GT,GTT	561.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.02;MQRankSum=0.882;QD=15.60;ReadPosRankSum=-0.641;SOR=1.380;set=HC	GT:AD:AF:DP	1/2:5,21,10:0.58,0.28:36
chr1	230820780	rs3215851	TA	T	2159.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	230822607	rs1536591	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	230841687	rs7080	T	C	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	230841780	rs11568041	G	A	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:149,214:0.59:363
chr1	230845794	rs699	A	G	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:206,200:0.49:406
chr1	230883466	rs12143120	C	T	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:108,126:0.54:234
chr1	230883484	rs6690251	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	230883499	rs6690254	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	230883546	rs74144819	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr1	230890945	rs55833939	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	230891248	rs2493145	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	230895421	rs28359610	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.849;QD=12.32;ReadPosRankSum=-0.614;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	230895436	rs112943452	GCATTTCCACA	G	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	230898231	rs2282318	T	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	230898494	rs2282319	C	T	4652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.886;QD=11.24;ReadPosRankSum=-1.976;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:181,233:0.56:414
chr1	230898615	rs3215985	G	GA	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr1	230903234	rs11122590	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	230903350	rs3828126	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.93;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	230907898	rs16852629	G	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	230910485	.	CTTTTT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.783;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	230916004	rs28359685	A	G	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	230923151	rs2297830	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	230923187	rs12731671	C	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	230923313	rs12731961	C	T	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	230928637	rs16852683	G	A	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	230979058	rs56753786	G	A	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	230979082	rs58069945	C	T	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	230979207	rs34864456	C	A	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	230979247	rs35238992	G	A	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	230979655	rs6672533	A	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	230979680	rs6672541	A	T	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	230991682	rs11805491	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	231042732	rs3811502	T	A	2393.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.633;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.240;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-0.765;SOR=0.424;set=HC	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	231047310	rs10580953	TAC	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=41.27;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	231059784	rs3748774	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	231060736	rs3748775	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr1	231064578	rs5781609	T	TCTC	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	231064611	rs950029	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	231064760	rs16853257	A	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:114,73:0.39:187
chr1	231067236	rs11122624	C	T	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.322;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:123,65:0.35:188
chr1	231067318	rs11122625	G	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:32,7:0.18:39
chr1	231069652	rs1890351	A	C	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	231076177	rs6671389	A	G	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr1	231081304	rs6673085	T	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	231093785	rs59207624	CT	C	613.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr1	231093879	rs111482076	C	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:99,111:0.53:210
chr1	231097042	rs11122162	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr1	231123915	rs58604888	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	231161773	rs12569337	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr1	231161817	.	TA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=1.695;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	231161956	rs12039193	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	231334780	rs11122249	C	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:205,92:0.31:297
chr1	231337031	rs11122252	C	A	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.119;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:70,62:0.47:132
chr1	231339810	rs115364967	A	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr1	231344589	rs75728373	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr1	231353462	rs6691392	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	231353589	rs4658907	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr1	231362923	rs491182	G	A	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr1	231377081	rs518686	C	T	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	231400905	rs849714	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	231401204	rs6702011	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr1	231401596	rs532226	T	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	231401902	rs574553	G	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	231408091	rs11558492	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr1	231471268	rs35468792	AT	A	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	231486989	.	A	C	31	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=26;MQ=60.0;NF=1;NR=2;PP=31;QD=21.9237375157;SC=TGCTTATGTAAATTGTTTTCT;SbPval=0.5;Source=Platypus;TC=6;TCF=3;TCR=3;TR=3;WE=231486997;WS=231486979;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	231487017	rs2474634	T	C	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	231488524	rs2437150	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:52,70:0.57:122
chr1	231502245	rs1435167	T	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.117;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr1	231502310	rs1435166	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	231506557	rs2256908	G	A	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	231664753	rs1621135	T	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	231903010	rs3738402	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr1	231906847	rs16854940	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr1	231936016	rs2759354	A	G	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	231954872	.	C	T	32	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5081;HP=1;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=2;NR=1;PP=32;QD=22.2570708491;SC=TCTCAGAAGACGCTGGTTCAG;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=231954880;WS=231954862;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	231956086	rs11122343	A	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr1	232094729	rs2794273	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	232144598	rs821616	A	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr1	232144887	rs821617	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	232534836	rs16856980	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	232535030	rs629939	C	T	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.73;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	232535030	.	CAGAAATA	TAGAAATA,TAGAAATG	435	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=27;MQ=59.8;NF=18,8;NR=35,18;PP=380,435;QD=7.82587193485;SC=CTGGTCAGAGCAGAAATAAAC;SbPval=0.6;Source=Platypus;TC=54;TCF=19;TCR=35;TR=53,26;WE=232535045;WS=232535020;set=Platypus	GT:AF:DP	0/1:0.98:54
chr1	232535037	rs79524568	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.197;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:48,49:0.51:97
chr1	232539391	rs16856990	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr1	232539781	rs74968443	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr1	232551416	rs12569188	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:89,113:0.56:202
chr1	232568293	rs1547741	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	232574921	rs2275307	T	C	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr1	232575051	rs189356281	G	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:89,110:0.55:199
chr1	232576998	rs12036020	T	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr1	232579597	rs4649372	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	232581247	rs1409369	C	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=2.459;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	232597987	rs12142629	T	A	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr1	232601170	rs73092900	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr1	232601208	rs7536385	A	G	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.976;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr1	232601229	rs76178660	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	232601234	rs138841495	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-1.695;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	232601261	rs34840482	CAT	C	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	232601291	rs7531995	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	232601293	rs34645211	CAT	C	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	232607094	rs12116822	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr1	232629170	rs11294872	TA	T	733.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr1	232629475	rs3737839	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	232650750	rs3795366	A	G	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	232650867	rs4649383	C	T	4733.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:295,245:0.45:540
chr1	232941400	rs373845358	G	C	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:132,130:0.50:262
chr1	232941652	rs61746497	G	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:152,119:0.44:271
chr1	232941677	rs3766497	G	T	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:139,177:0.56:316
chr1	232942028	rs61739198	A	G	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:153,167:0.52:320
chr1	232942251	rs12048236	A	G	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:193,157:0.45:350
chr1	232942276	rs61735495	G	A	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:171,145:0.46:316
chr1	233137225	rs140788891	CATAA	C	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=42.45;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	233152910	rs11271054	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-0.667;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	233160772	rs17355937	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	233225848	rs12059884	T	C	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.880;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:86,95:0.52:181
chr1	233231619	rs78414174	A	G	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-0.914;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:53,112:0.68:165
chr1	233296883	rs112899073	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	233296891	rs2296515	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	233296908	rs2296516	T	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	233336065	rs12075409	C	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	233353573	rs696857	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	233354017	rs701182	T	C	50.18	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	233388281	rs7546784	G	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	233394248	rs10910120	T	C	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,437:1.00:439
chr1	233397267	rs10489808	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	233397752	rs6701073	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	233398670	rs12132556	C	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	233398713	rs1033325	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	233398927	rs1033324	C	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	233398931	rs5781734	G	GC	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	233398993	rs1033323	C	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	233489499	rs7539016	A	G	392.88	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	233489529	rs7549137	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr1	233489682	rs56268427	G	A	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:73,83:0.53:156
chr1	233489707	rs7551511	G	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr1	233490536	rs137943316	A	AATGTCTTGGGGATAATCTG	1504.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr1	233490543	rs2049182	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr1	233490764	rs4649219	G	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	233490776	rs4649220	C	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	233512313	rs1294248	C	T	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:140,139:0.50:279
chr1	233749896	rs140745317	C	CTTGGCTTTGGCT	1180.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	233750086	.	C	A	2352.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:70,110:0.61:180
chr1	233785716	rs17814096	T	G	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.403;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:79,72:0.48:151
chr1	234040742	rs12136133	A	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.205;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:66,53:0.45:119
chr1	234041422	rs57010808	G	C	5182.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:373,280:0.43:653
chr1	234367327	rs78137543	G	A	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr1	234367549	rs2236220	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr1	234442257	rs877722	A	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr1	234444761	rs11359233	TA	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.160;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	234452263	rs745858	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr1	234509259	rs10910420	G	C	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	234509972	rs73099933	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	234510262	rs4300255	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	234519385	rs10797539	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	234519452	rs58896934	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=0.956;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	234527575	rs3862040	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	234528006	rs3754317	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	234529519	rs1802871	C	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=40.08;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	234529540	rs1134756	G	A	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.84;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	234529552	rs2175594	C	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.82;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	234529570	rs2175593	G	A	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	234541801	rs12073170	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:127,64:0.34:191
chr1	234546354	rs41266235	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr1	234546384	rs12072682	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr1	234563556	rs10910434	T	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	234564864	rs71701823	GAA	G	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr1	234565078	rs4027042	G	GAA	938.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.924;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:52,44:0.46:96
chr1	234566085	rs2236587	A	G	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.158;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:82,64:0.44:146
chr1	234569192	rs3754311	T	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,70:0.40:177
chr1	234573171	rs2273873	A	C	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:136,132:0.49:268
chr1	234582457	rs270527	C	T	1356.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.905;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.09;ReadPosRankSum=-0.792;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr1	234582457	.	CTTTG	TTTTA,TTTTG	265	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=4;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=9,20;NR=5,8;PP=146,265;QD=14.2477053473;SC=AAAGTTTTCTCTTTGTTTTAA;SbPval=0.35;Source=Platypus;TC=29;TCF=21;TCR=8;TR=14,28;WE=234582469;WS=234582447;set=Platypus	GT:AF:DP	0/1:0.48:29
chr1	234582461	rs2203167	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.650;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr1	234582651	rs4920246	T	C	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr1	234584231	rs2102596	C	T	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:93,161:0.63:254
chr1	234584445	rs7527374	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	234584446	rs270526	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	234593403	rs6693478	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	234596202	rs270511	T	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	234613860	rs12082841	A	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.538;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr1	234614607	rs188658832	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.998;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	234744413	rs4636	C	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	234745009	rs7545855	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	235285740	rs4659823	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr1	235285749	rs114932750	T	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr1	235301283	rs150894211	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	235324047	rs66533903	A	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	235324298	rs2295815	T	C	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:177,98:0.36:275
chr1	235324550	rs180822631	C	T	6000.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:473,321:0.40:794
chr1	235357303	rs34768226	A	ATG	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.05;ReadPosRankSum=0.903;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	235357460	rs62000435	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr1	235383188	rs4659654	A	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:4,63:0.94:67
chr1	235392546	rs12731746	T	C	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	235394541	rs7518225	A	C	189.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	235397937	rs35818300	GCA	G	73.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	235420557	.	T	TA	791.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr1	235490391	rs3840452	CA	C	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	235504974	rs112304451	CATAATT	C	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	235505313	rs3841735	A	AT	1051.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	235543262	rs11425048	C	CA	160.79	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	235543476	.	TTGTGTGTGTGTGTG	T,TTGTGTGTGTG	1784.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=146;set=Intersection	GT:AF:DP	1/2:0.68,0.32:56
chr1	235564731	rs80020827	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr1	235594182	rs2291687	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	235598973	rs2055127	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.214;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	235600049	rs55962679	A	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	235600590	rs6697653	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	235600741	rs6666168	A	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,76:0.57:134
chr1	235600813	rs6666184	A	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	235601958	rs3819974	G	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	235604995	rs181171342	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-2.103;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr1	235606402	rs112235573	G	GC	132.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	235611521	rs112398616	A	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.927;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	235611534	.	T	TC	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=1.462;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	235613727	rs41308204	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr1	235628908	rs1305556	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr1	235634048	.	AAC	A	321.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	235647631	rs291387	G	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	235652513	rs291396	T	C	3925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=0.625;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:147,189:0.56:336
chr1	235657893	.	G	A	243.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	235667690	rs291348	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	235747285	rs111901226	T	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	235826382	.	TAA	T,TA	910.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=-1.280;SOR=1.106;set=HC	GT:AD:AF:DP	1/2:3,25,20:0.52,0.42:48
chr1	235827641	rs12092604	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.31;ReadPosRankSum=-1.420;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	235856901	rs3754232	G	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	235860340	rs7541057	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	235878694	rs75969672	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr1	235887276	rs6667717	G	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	235896726	rs6429275	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	235910392	rs6676149	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	235910542	rs3754234	C	T	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	235918688	rs374043151	CAAAAGAAAAG	C	1393.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;QD=44.96;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	235920574	rs111764031	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.416;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr1	235922228	rs3738519	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	235922341	rs112601869	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr1	235940450	rs2273584	C	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	235945294	rs6696123	T	C	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr1	235967730	rs10489646	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	235972435	rs3820553	T	C	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	235972867	rs1063128	T	C	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr1	236142565	rs1536132	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236143302	rs3831989	C	CA	746.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr1	236144754	rs3820558	C	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=0.703;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	236144951	rs3738525	A	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:56,75:0.57:131
chr1	236145145	rs715956	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	236154057	rs139359390	AGGACTACAT	A	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	236154365	rs4660137	G	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr1	236175339	rs2031487	T	C	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	236176845	rs35714220	C	T	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	236176990	rs10803217	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	236180700	rs143774517	T	TC	347.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.75;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236187365	rs3738533	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	236187449	rs34743457	C	T	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	236187618	rs116324777	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	236189278	rs16833131	C	T	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	236196017	rs116464435	A	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=1.157;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	236228141	rs201065095	C	CG	4002.73	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:245,161:0.40:406
chr1	236347224	rs67652024	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr1	236368708	rs1254206	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.180;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	236371260	rs1880913	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236393654	rs2812471	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	236416923	rs10082203	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	236433135	rs3834089	AT	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.582;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	236444879	rs11281666	G	GGCCCGGCCCT	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	236557771	rs966365	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:101,77:0.43:178
chr1	236557928	rs966364	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-0.864;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	236572389	rs659901	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	236572475	rs669710	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr1	236590675	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.704;QD=1.02;ReadPosRankSum=0.154;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr1	236689187	rs7518541	T	C	156.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.55;ReadPosRankSum=-0.000;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	236700673	rs62670060	GAGC	G	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	236700807	rs1126407	T	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:113,90:0.44:203
chr1	236700823	rs1041934	T	C	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:132,119:0.47:251
chr1	236700857	rs1041935	C	T	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:126,146:0.54:272
chr1	236700982	rs2737706	T	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr1	236702153	rs2244808	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.22;ReadPosRankSum=-1.242;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	236702209	rs1041936	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.696;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	236702210	rs1041937	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	236702374	rs2472126	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr1	236702447	rs12744425	T	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=1.198;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	236702450	rs12744427	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.38;ReadPosRankSum=2.222;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	236702475	rs11807205	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	236702497	rs111502141	AGTTT	A	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	236702517	rs11807542	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	236703767	rs2758994	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.62;ReadPosRankSum=-0.349;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	236703832	rs34818366	CG	C	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.887;QD=10.41;ReadPosRankSum=-0.129;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr1	236704888	.	ATAT	AACAGGTTAT,A	37.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=4;set=Intersection	GT:AF:DP	0/1:0.67:3
chr1	236704891	.	TAAA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr1	236704894	.	A	AGGTT	112	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=4;MGOF=284;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=112;QD=66.5;SC=GTCAATATAAAATATTTAGAA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=236704902;WS=236704878;set=Platypus	GT:AD:AF:DP	1/0:1,2:0.67:3
chr1	236704897	.	ATT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr1	236705104	rs142600375	T	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.058;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	236706352	rs2758174	A	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr1	236706371	rs2758175	A	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,72:0.63:115
chr1	236706425	rs2244267	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr1	236706671	rs2243530	T	A	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	236706780	rs2243527	C	T	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	236706862	rs2243525	G	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	236707007	rs2799410	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr1	236707036	rs2794786	A	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-0.055;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr1	236707045	rs2799409	C	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=-0.215;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	236708022	rs5781896	GT	G	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=1.931;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	236708224	rs2244063	A	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr1	236708316	rs2758181	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	236708357	rs60495052	C	CCCTT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.967;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr1	236711297	rs2254823	A	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	236711323	rs15701	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	236711586	rs1160	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	236714064	rs6989	A	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	236714335	rs2254487	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=1.267;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	236716741	rs1475132	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	236716959	rs2275685	C	T	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=1.567;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:68,110:0.62:178
chr1	236717104	rs2275686	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	236717926	rs2275687	T	C	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:100,137:0.58:237
chr1	236718524	rs6668848	G	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	236718561	rs6668926	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr1	236718620	rs1126627	T	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr1	236719135	rs1885532	T	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	236719193	rs1885533	A	G	2882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.811;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:152,149:0.50:301
chr1	236720761	rs2799404	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	236721610	rs2275688	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr1	236721660	rs2275689	T	C	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	236721731	rs819431	T	C	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	236722182	rs819432	A	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	236722489	rs2146122	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	236723177	rs10754576	GC	AA	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr1	236729867	rs2758172	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	236732198	rs12135604	C	A	62.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	236732199	.	A	AC	53.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	236734896	rs61730304	T	C	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.303;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:91,126:0.58:217
chr1	236735676	rs73114810	C	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:102,72:0.41:174
chr1	236737933	rs10925163	G	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chr1	236739416	rs2115740	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-2.060;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr1	236740030	rs10925164	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr1	236740039	rs6658793	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr1	236744424	rs35257076	A	AT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.554;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr1	236744720	.	TAA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.112;SOR=2.129;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	236746275	rs2794769	G	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr1	236746443	rs2794768	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr1	236748505	rs1006456	T	C	6317.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:229,308:0.57:537
chr1	236748570	rs657629	T	C	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=1.167;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:131,88:0.40:219
chr1	236748630	rs1006455	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=-0.265;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	236748636	rs1006454	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=0.353;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr1	236749348	rs2794764	C	T	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	236749451	rs3831993	TA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	236749817	rs2799420	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	236751208	rs142757913	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr1	236751519	rs34200005	GA	G	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr1	236755170	rs2794760	G	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr1	236755427	rs2794759	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr1	236755814	rs2794757	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.630;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	236755837	rs2564739	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	236755937	rs67239913	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=-0.813;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	236757200	rs2564738	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	236757229	rs2794754	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.750;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr1	236758887	rs2794751	T	C	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:118,119:0.50:237
chr1	236759060	rs2794750	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr1	236767072	rs1529540	A	G	59.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	236767176	rs1529541	C	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.136;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=0.998;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	236767178	rs375752396	AG	A	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.430;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	236767181	.	G	GA	195.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.384;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr1	236767182	rs6650089	G	A	779.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-1.475;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr1	236767330	rs10802551	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr1	236881407	rs10925203	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	236882110	rs1341865	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	236882303	rs1341864	T	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	236883240	rs1768053	T	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	236883421	rs1341863	C	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-2.346;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:53,49:0.48:102
chr1	236883564	rs1341862	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	236889111	rs12081658	G	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	236890781	rs1768056	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=-0.094;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	236890814	rs147735389	AGAT	A	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	236894647	rs819640	G	A	2330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.187;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:85,115:0.57:200
chr1	236897633	rs707203	A	G	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	236897867	rs16834301	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr1	236899899	rs11355106	TC	T	1335.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr1	236902594	rs2288601	C	G	9123.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	236907847	rs3738543	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.521;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr1	236907966	rs35956798	G	A	6044.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.35;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	236907966	.	GTC	ATC,ATT	647	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=59.96;NF=54,26;NR=36,16;PP=647,526;QD=7.57523569497;SC=ACGAGTCGGCGTCGCTGACAG;SbPval=0.52;Source=Platypus;TC=91;TCF=55;TCR=36;TR=90,42;WE=236907976;WS=236907956;set=Platypus	GT:AF:DP	0/1:0.99:91
chr1	236907968	rs143749154	C	T	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.975;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:96,80:0.45:176
chr1	236911221	rs79149380	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	236912597	rs2297955	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	236914738	rs140875513	ATTGT	A	3567.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr1	236924506	rs2282366	A	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:93,79:0.46:172
chr1	236925844	rs12063382	G	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:133,123:0.48:256
chr1	236958532	rs28372871	G	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	236959082	rs10399834	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr1	236978992	rs5781924	T	TTCTG	5841.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	236988593	rs5781926	A	AT	1054.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr1	237024404	rs12078297	T	C	126.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.09;ReadPosRankSum=0.282;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	237037231	rs200001208	GCCC	G	2470.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:130,69:0.35:199
chr1	237037235	.	C	T	2480.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.537;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=8.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.461;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:129,69:0.35:198
chr1	237037238	rs201508556	GAGGGT	G	2468.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:127,66:0.34:193
chr1	237037319	rs3737291	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr1	237048500	rs1805087	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr1	237048562	rs2275566	G	A	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	237057608	rs2297965	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr1	237057882	rs2297964	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr1	237058743	rs61736326	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:94,112:0.54:206
chr1	237058828	rs1131449	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr1	237058996	rs75739277	C	CTATT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	237060433	rs3820571	G	T	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.290;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	237060850	rs12022937	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	237063335	rs1050996	G	C	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	237497102	rs114500010	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	237516073	rs10802607	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.890;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	237519137	rs10802608	T	A	60.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.20;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	237519165	rs10925382	G	T	100.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.81;ReadPosRankSum=-0.431;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	237540615	rs10925391	A	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	237551241	rs71561868	G	GTC	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	237551376	rs10754602	T	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	237580606	rs6673182	G	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.60;ReadPosRankSum=1.772;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	237580612	rs6673187	G	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.43;ReadPosRankSum=1.092;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	237619875	rs60132900	AT	A	1024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=2.983;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:92,96:0.51:188
chr1	237656185	.	A	AAGGG,AAGGGAGGGAGGG	946.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.56;QD=39.45;SOR=2.925;set=HC	GT:AD:AF:DP	1/2:0,9,15:0.38,0.62:24
chr1	237670140	rs2618702	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	237675150	rs57409517	A	AG	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	237693610	rs34521733	C	CA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=0.651;QD=3.98;ReadPosRankSum=1.911;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr1	237693921	rs2779365	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-1.133;QD=11.52;ReadPosRankSum=-1.030;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	237711644	rs2618661	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	237711797	rs2253273	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,81:0.57:141
chr1	237730124	rs2805390	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	237730169	rs2779401	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	237732395	rs2805396	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	237780529	rs74147120	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr1	237787193	rs112769379	C	CT	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	237791000	rs74147172	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	237794913	.	ATTTTTTTTTTT	A	56.37	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	237796837	rs10802626	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr1	237796850	rs12563366	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr1	237797082	rs1967579	T	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	237801770	rs707189	T	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	237802559	rs530109	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	237813126	rs625006	A	G	41.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	237814783	rs684923	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr1	237817514	rs3831940	GA	G	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	237823256	rs10925485	A	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.640;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr1	237824332	rs471647	G	A	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	237831103	rs477245	C	A	86.94	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	237850666	rs10679267	C	CT	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.433;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr1	237863718	rs2797436	T	G	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=1.459;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:71,114:0.62:185
chr1	237863790	.	G	GT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=1.540;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr1	237865203	rs939699	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-0.119;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	237881770	rs2797441	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.952;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:44,25:0.36:69
chr1	237890437	rs2685301	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:73,112:0.61:185
chr1	237893674	rs2797445	C	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	237923053	rs2253831	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,71:0.58:122
chr1	237946964	rs790889	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr1	237951226	rs16835813	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr1	237951451	rs2256242	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	237951482	rs16835818	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	237955649	rs59401608	CTGTGTGTG	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.000;QD=15.87;ReadPosRankSum=-0.231;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	237955666	.	T	TGTGTGTGTGCGCGC	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.000;QD=6.38;ReadPosRankSum=0.405;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	237955696	rs377631533	TGC	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.000;QD=9.88;ReadPosRankSum=-1.513;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	237957146	rs790902	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	237957161	rs790901	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr1	237957309	rs790900	A	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr1	237958750	rs35572672	A	AT	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	237961357	rs78369334	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:133,119:0.47:252
chr1	237965035	rs2790346	C	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.010;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr1	237965043	rs2790347	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.992;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	237965094	rs2794820	G	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr1	237965131	rs9428384	G	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.093;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr1	237969638	rs790879	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.502;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr1	237972323	rs75206601	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	238045590	rs2794813	C	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	238045995	rs2275694	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.485;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr1	238046253	rs2794814	T	C	59.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	238048325	rs2298100	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	238051852	rs147487077	A	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	238051933	rs2236595	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	238053326	rs200855875	A	G	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:204,149:0.42:353
chr1	238053524	rs538499	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	240255299	.	C	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.952;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	240255568	rs140531536	GGGC	G	2369.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr1	240255772	rs112904598	C	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:176,122:0.41:298
chr1	240370913	.	TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	T	1486.73	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr1	240371075	rs71646825	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=1.639;QD=12.56;ReadPosRankSum=-0.797;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	240371085	rs71646826	A	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=1.740;QD=13.67;ReadPosRankSum=-2.222;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	240371097	rs71646827	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=1.326;QD=9.34;ReadPosRankSum=-1.170;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	240371100	rs71646887	C	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=1.421;QD=8.23;ReadPosRankSum=-1.780;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	240421383	rs10926181	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	240421437	rs10926182	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	240448468	rs6664907	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr1	240457973	rs7526497	G	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	240492526	rs111507136	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr1	240492543	rs6686353	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	240497265	rs10157874	A	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	240601269	rs2356386	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	240635491	rs2210861	G	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	240637571	rs882869	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr1	240643137	rs9442212	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	240643167	rs11578184	A	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	240643184	rs9442211	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	240643435	rs12748248	A	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	240655330	rs9287248	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	240656797	rs11806449	G	A	2454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.292;QD=8.67;ReadPosRankSum=-1.209;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:154,129:0.46:283
chr1	240656841	rs45519645	A	T,AT	2399.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.319;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.344;QD=21.43;ReadPosRankSum=-2.807;SOR=1.157;set=HC	GT:AD:AF:DP	1/2:10,56,46:0.50,0.41:112
chr1	240656852	rs34695275	T	TA	930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.547;QD=9.31;ReadPosRankSum=-0.108;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:57,43:0.43:100
chr1	240975213	rs2275742	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr1	240975435	rs2275744	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr1	240977964	rs12744536	G	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=1.497;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	240979803	rs3738068	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.20;ReadPosRankSum=0.210;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	241093952	rs3912110	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr1	241093972	rs3912109	C	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	241094174	rs16841072	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	241146322	rs7520707	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	241519098	rs4659599	T	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr1	241663825	rs2070080	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr1	241667244	rs4659607	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr1	241675119	rs6673988	G	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	241676758	rs10926500	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr1	241676972	rs10926501	G	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:84,81:0.49:165
chr1	241695511	rs141767049	TG	T	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	241712134	rs11556464	C	T	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.815;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:102,78:0.43:180
chr1	241767930	rs632966	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	241838057	rs67170285	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.545;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	241838065	rs66585415	T	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-2.106;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	241847018	rs10802979	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	241850851	rs74605173	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr1	241850877	rs75563780	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	241886430	rs12748037	C	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	241886754	rs10926548	T	C	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=-0.932;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr1	241886764	rs10926549	A	G	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=0.051;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	241901818	rs73141064	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr1	241907817	rs10802990	T	C	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr1	241907833	rs58166732	C	T	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:105,103:0.50:208
chr1	241907948	rs6703922	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr1	241920522	.	CT	C	802.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr1	241920524	.	T	C	811.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=-0.594;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr1	241920562	rs6663895	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.354;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:42,52:0.55:94
chr1	241929542	rs12095445	G	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-2.055;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr1	241933876	rs11809239	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	241934825	rs139942709	C	CA	151.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	241935152	rs114725032	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	241936055	rs6429310	A	G	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	241946766	rs953597	A	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	241951034	rs6429312	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	241951106	rs6429313	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	241951329	rs12074374	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	241954005	.	TAA	T,TA	1723.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.255;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.02;MQRankSum=-0.152;QD=14.99;ReadPosRankSum=-0.690;SOR=0.788;set=HC	GT:AD:AF:DP	1/2:11,65,39:0.57,0.34:115
chr1	242015591	rs4149863	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	242015820	rs2526704	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	242020495	rs2995544	C	T	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	242024852	rs4149917	C	T	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:239,166:0.41:405
chr1	242030151	rs735943	A	G	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:86,131:0.60:217
chr1	242042301	rs1047840	G	A	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	242042545	rs1776148	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	242042690	rs1418760	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	242045275	rs1635498	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=3.080;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	242048514	rs10666416	G	GTAAATAAA	780.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	242053042	rs851797	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	242253024	rs7523793	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	242511556	rs112478548	AACAAAG	A	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr1	243354791	rs144272877	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	243362331	rs2789172	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.82;QD=27.03;SOR=1.879;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	243388370	rs10926973	A	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	243388643	rs76382655	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr1	243434123	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.58;ReadPosRankSum=0.287;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	243457194	rs143029124	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	243662942	rs5782265	G	GT	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	243809158	rs147452925	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.976;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	244527857	rs10927214	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	244528127	rs9782996	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr1	244587195	rs57748551	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr1	244601152	rs3127465	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	244624635	rs3006006	G	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	244624887	rs3124058	T	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	244723920	rs7522899	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	244724092	rs7544794	G	A	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr1	244735858	rs10927267	A	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr1	244747051	rs6429486	G	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	244747150	rs6429487	G	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	244747293	rs6429488	CG	TA	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	244747339	rs6429490	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	244754961	rs41269387	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.397;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	244773784	rs6698173	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	244803205	rs60280231	CTT	C	1881.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=1.436;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:11,70:0.86:81
chr1	245005373	rs10927335	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	245005492	rs150123625	T	TG	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	245005713	rs12095737	A	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	245006492	rs199795132	T	TAGAAA	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-1.842;QD=35.21;ReadPosRankSum=-2.241;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr1	245018456	rs113724064	TAGCA	T	2768.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr1	245018471	.	A	C	540.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr1	245021132	rs9730334	C	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	245021291	rs11299108	TA	T	1655.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:4,99:0.96:103
chr1	245025692	rs12124462	A	T	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.40;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	245133539	rs7542813	A	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	245133600	rs73121673	C	T	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:88,151:0.63:239
chr1	245165448	rs58188831	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr1	245179011	rs201488109	CA	C	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.101;QD=2.41;ReadPosRankSum=3.274;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:119,74:0.38:193
chr1	245179171	rs1196365	C	T	3150.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:107,148:0.58:255
chr1	245179188	rs1196366	G	T	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	245179212	rs6696296	C	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr1	245180639	rs34180210	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.381;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	245222634	rs694793	C	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr1	245222839	rs579269	G	T	1506.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.088;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.197;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-1.356;SOR=0.114;set=HC	GT:AD:AF:DP	1/1:3,69:0.96:72
chr1	245318688	rs12409851	C	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:88,91:0.51:179
chr1	245582792	rs1111814	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=1.999;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr1	245703819	rs7551348	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	245703990	rs9919234	G	T	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	245775285	rs116826447	C	T	3843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-0.097;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:137,186:0.58:323
chr1	245775399	.	TGTGTGTGTGAGAGAGA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.758;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	245775405	.	TGTGAGA	T	767	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=72;MMLQ=27;MQ=55.85;NF=0;NR=13;PP=767;QD=59.2307692308;SC=TGTGTGTGTGTGTGAGAGAGA;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=13;WE=245775422;WS=245775385;set=Platypus	GT:AD:AF:DP	1/1:2,13:0.87:15
chr1	245851304	rs6701084	A	G	10352.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	245861565	rs7530669	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr1	245862292	rs61734432	C	T	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-1.349;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:96,84:0.47:180
chr1	245927199	rs12082917	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=2.979;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	246021881	rs9662980	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	246027034	rs2153404	G	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	246079000	rs10924386	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	246091457	rs6669768	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	246091516	rs144971092	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	246091531	rs6669866	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	246110895	rs10924400	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	246489706	rs57404221	GA	G	1355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-1.582;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:87,94:0.52:181
chr1	246490438	rs3737245	T	C	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	246490442	rs3737246	A	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.33;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	246670281	rs6671418	G	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	246670297	rs201911211	CCCT	C	146.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.122;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr1	246670298	rs150603688	CCT	C	1534.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:20,66:0.77:86
chr1	246670333	rs6426303	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	246711788	rs12087297	AT	TA	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	246712033	rs1890160	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	246714587	rs10754526	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	246714631	rs80342781	TG	AA	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	246714636	rs34850511	T	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	246714728	rs9426201	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	246714740	rs10754527	C	T	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	246720174	rs3120710	A	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	246720798	rs3124071	G	A	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	246727558	rs3120713	G	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	246754778	rs35302997	G	GA	169.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	246754947	rs35286882	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	246890158	rs34677128	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr1	246899123	rs61852479	T	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.15;ReadPosRankSum=0.338;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	246903460	rs6656460	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr1	246929183	rs4926450	G	C	54.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	246930683	rs114509846	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr1	246939610	rs3838991	A	ATATT	3079.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=20.53;ReadPosRankSum=1.166;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:73,77:0.51:150
chr1	246939856	rs3795465	G	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr1	246940178	rs76163731	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr1	246940442	rs3795462	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	246940615	rs76156068	G	A	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=1.221;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:92,75:0.45:167
chr1	246942171	rs4926444	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:135,90:0.40:225
chr1	247006160	rs5021094	G	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	247021266	.	CTT	C	131	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	247021271	rs116163292	T	C	140.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	247025531	rs55727006	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	247031237	rs2800222	C	G	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	247048834	rs2642990	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.71;QD=27.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	247058168	rs967953	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.536;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr1	247062610	rs58965522	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr1	247067139	rs34620854	CA	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.825;QD=6.72;ReadPosRankSum=-0.517;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr1	247071032	.	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.320;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr1	247091560	rs76289950	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-1.006;QD=8.65;ReadPosRankSum=2.013;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	247094263	rs73146640	G	A	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:92,103:0.53:195
chr1	247094302	rs78510255	A	G	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:93,118:0.56:211
chr1	247094354	rs77855548	TG	AT	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;JOINED;set=Intersection	GT:AD:AF:DP	0/1:88,122:0.58:210
chr1	247109014	rs2642982	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	247109168	rs6426191	G	A	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.206;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:101,80:0.44:181
chr1	247109267	rs2642983	A	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,62:0.41:150
chr1	247129945	rs1779985	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	247150631	rs77178548	T	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:135,101:0.43:236
chr1	247150740	rs3749427	T	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,101:0.56:179
chr1	247151487	rs55762230	C	T	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=3.294;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:175,187:0.52:362
chr1	247151557	rs2642992	A	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-2.312;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr1	247159480	.	T	A	384.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	247162628	rs4384270	C	T	5456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.355;QD=10.30;ReadPosRankSum=-3.513;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:254,276:0.52:530
chr1	247162658	rs2642973	C	T	11536.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.52;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	247171275	rs147214160	C	T	6244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.409;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:222,300:0.57:522
chr1	247241795	rs41310571	C	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:49,69:0.58:118
chr1	247241850	rs41305955	G	C	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:110,202:0.65:312
chr1	247263597	rs116693342	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-1.763;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	247267258	rs61730461	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr1	247267488	rs61730462	A	G	3436.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:206,183:0.47:389
chr1	247287260	rs3901383	A	G	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-0.482;QD=5.66;ReadPosRankSum=1.503;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:164,88:0.35:252
chr1	247287269	rs78802037	T	C	4327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-2.081;QD=18.49;ReadPosRankSum=-1.872;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:103,131:0.56:234
chr1	247322298	rs6675536	G	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-1.105;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:62,54:0.47:116
chr1	247323244	rs77506010	G	T	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	247323260	rs9793102	C	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr1	247365430	rs10754539	A	G	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:137,109:0.44:246
chr1	247419509	rs1778540	T	C	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:103,134:0.57:237
chr1	247419664	rs1778541	C	T	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:151,219:0.59:370
chr1	247485932	rs10924984	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	247486678	rs7540329	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	247582446	rs67416368	TTA	T	237.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	247587408	rs7525979	C	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:207,170:0.45:377
chr1	247587531	rs4925543	A	G	9805.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr1	247588960	rs3738447	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=2.522;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	247593142	rs12060377	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.18;ReadPosRankSum=0.174;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	247597329	rs12124866	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	247597365	rs10925022	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	247597656	rs3835304	TG	T	456.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr1	247599232	rs10754557	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	247611514	rs112819557	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	247614386	rs12070953	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr1	247614657	rs73140586	A	G	4696.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:137,217:0.61:354
chr1	247614763	rs58058243	C	T	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:264,136:0.34:400
chr1	247614784	rs74154654	C	G	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:263,140:0.35:403
chr1	247614896	rs11583410	A	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:120,137:0.53:257
chr1	247654993	rs10925061	T	C	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:168,135:0.45:303
chr1	247655275	rs12141850	T	C	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	247690320	rs2141543	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:89,66:0.43:155
chr1	247695612	rs6657127	G	A	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	247695756	rs6697472	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	247702118	rs2103336	C	T	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:119,77:0.39:196
chr1	247712303	rs41315846	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	247751897	.	G	T	2243.77	.	AC=1;AF=0.500;AN=2;DP=192;set=Intersection	GT:AD:AF:DP	0/1:79,110:0.58:189
chr1	247752019	rs1151687	G	C	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:108,141:0.57:249
chr1	247752161	rs10925085	T	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:105,120:0.53:225
chr1	247752650	rs35280339	AT	A	453.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	247836009	.	A	T	1152.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr1	247875415	rs2282316	A	G	6464.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	247875608	rs6587382	C	G	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:91,87:0.49:178
chr1	247886505	rs62619785	G	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr1	247886615	rs11809582	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr1	247887002	rs11204577	G	A	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.113;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:123,50:0.29:173
chr1	247902408	rs61731395	G	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:107,152:0.59:259
chr1	247920860	rs185251055	C	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:124,92:0.43:216
chr1	247921100	rs1552812	T	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr1	247921352	rs1552813	C	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:61,71:0.54:132
chr1	247921509	rs116453035	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr1	247921717	rs10888359	C	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	247978319	rs6695283	A	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	247979061	rs11204514	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	248004296	rs6681483	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr1	248004614	rs6667389	G	A	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr1	248004687	rs10888255	C	G	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:178,191:0.52:369
chr1	248004775	rs10888256	C	T	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:177,195:0.52:372
chr1	248004848	rs4607924	G	C	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,116:0.52:221
chr1	248004877	rs10888257	C	T	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-0.681;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:91,101:0.53:192
chr1	248004884	rs1339845	T	C	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.70;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	248005213	rs7522811	G	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr1	248005248	rs371395265	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr1	248020448	rs10749636	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	248020556	rs11204523	G	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.195;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr1	248023966	rs3737277	C	T	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.905;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:47,51:0.52:98
chr1	248024073	rs3737276	A	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.689;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	248039245	rs59513666	C	T	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:125,121:0.49:246
chr1	248039294	rs1339847	G	A	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:179,196:0.52:375
chr1	248039713	rs3811445	A	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	248058755	rs1337876	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	248058797	rs1856248	T	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	248058845	rs4500353	A	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	248058879	rs6587387	A	T	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	248059252	rs61750779	C	T	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:195,144:0.42:339
chr1	248084222	rs12048237	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	248084464	rs11204564	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.97;QD=34.27;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	248084471	rs149623571	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.684;MLEAC=1;MLEAF=0.500;MQ=49.52;MQRankSum=-0.630;QD=20.02;ReadPosRankSum=1.624;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr1	248084473	rs143274587	C	A	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.017;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.500;MQ=48.74;MQRankSum=-0.600;QD=20.91;ReadPosRankSum=1.713;SOR=1.915;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	248085108	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=57.81;NF=4;NR=0;PP=22;QD=14.1928031368;SC=CCAAATCCCACAGGTCCACTA;SbPval=1.0;Source=Platypus;TC=22;TCF=15;TCR=7;TR=4;WE=248085116;WS=248085098;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chr1	248085251	rs58882030	G	A	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:95,63:0.40:158
chr1	248085341	rs4925773	T	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	248085358	.	CTG	C	50	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=27;MQ=59.78;NF=0;NR=2;PP=50;QD=30.0;SC=TCTGTTGTCTCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=2;WE=248085367;WS=248085348;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr1	248097100	rs79168188	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-1.431;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	248097922	rs80338561	A	G	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:226,141:0.38:367
chr1	248112345	.	G	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=9.356;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-7.563;QD=1.02;ReadPosRankSum=-3.232;SOR=1.957;set=HC	GT:AD:AF:DP	0/1:124,17:0.12:141
chr1	248153816	rs200338842	AT	A	2673.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:114,130:0.53:244
chr1	248153901	rs113862338	C	T	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:227,255:0.53:482
chr1	248154089	rs140904971	A	C	5759.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:208,275:0.57:483
chr1	248154496	rs79304667	A	G	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:106,128:0.55:234
chr1	248166870	rs200454538	A	G	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:182,95:0.34:277
chr1	248201879	rs73141396	T	C	4757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-5.572;QD=12.49;ReadPosRankSum=1.825;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:151,230:0.60:381
chr1	248201892	rs73141397	T	G	5062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-5.981;QD=12.38;ReadPosRankSum=0.177;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:162,247:0.60:409
chr1	248202283	rs73141398	A	G	7205.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:304,354:0.54:658
chr1	248202344	rs6658141	G	C	7326.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:317,355:0.53:672
chr1	248202522	rs112747916	G	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:110,122:0.53:232
chr1	248202623	rs5782452	GAA	G	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	248224294	rs6658256	C	T	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:238,206:0.46:444
chr1	248224489	rs56834114	A	G	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:229,143:0.38:372
chr1	248224618	rs113050484	C	G	7739.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:285,374:0.57:659
chr1	248224754	rs55893924	T	C	5579.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:124,250:0.67:374
chr1	248247140	rs111755774	G	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	248263495	rs74153072	T	G	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:120,121:0.50:241
chr1	248343543	rs9435919	C	T	3790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-2.312;QD=24.78;ReadPosRankSum=0.585;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:56,97:0.63:153
chr1	248343547	rs61156873	C	G	3846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-2.554;QD=25.82;ReadPosRankSum=-0.434;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:54,95:0.64:149
chr1	248344442	rs4916105	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	248366702	rs4916112	G	A	7514.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:231,361:0.61:592
chr1	248367415	rs4916082	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	248402758	rs6666148	C	T	5732.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr1	248457979	rs6667171	C	A	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	248458676	rs6678138	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	248458689	rs6674940	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr1	248458718	rs79635253	T	C	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr1	248486895	rs4244184	G	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	248486913	rs4244185	A	G	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	248487638	rs7555310	A	G	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	248487768	rs7555424	A	G	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	248512498	rs28448343	A	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,98:0.60:163
chr1	248524974	rs57795102	A	G	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,329:0.99:331
chr1	248525053	rs28415565	A	T	13936.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.57;QD=44.53;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	248525060	rs28491677	T	A	14214.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=46.45;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	248525071	rs28499298	T	C	13807.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	248525100	rs73146195	G	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=15.853;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=-3.240;QD=2.53;ReadPosRankSum=0.314;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:197,42:0.18:239
chr1	248525146	rs28482938	C	T	2779.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chr1	248525285	rs28637620	T	C	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;QD=46.44;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	248525285	.	TTCTACG	CTCTACG,CTCTATC	1918	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=27;MQ=44.14;NF=51,21;NR=43,12;PP=1918,1405;QD=20.7741618356;SC=GCAGATGTTCTTCTACGTGAC;SbPval=0.6;Source=Platypus;TC=100;TCF=53;TCR=47;TR=94,33;WE=248525299;WS=248525275;set=Platypus	GT:AF:DP	0/1:0.94:100
chr1	248525287	rs141576206	CTACG	C	3835.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr1	248525290	rs202028348	C	T	1307.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=22.008;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=-1.036;QD=9.83;ReadPosRankSum=-2.793;SOR=2.299;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr1	248525291	rs28540568	G	C	1307.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.841;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=22.008;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=-1.036;QD=9.83;ReadPosRankSum=-2.633;SOR=2.299;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr1	248525328	rs61248663	C	CTA	11195.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	248525330	rs56721857	A	G	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	248525647	rs28405645	C	A	14317.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.50;QD=45.74;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	248525650	rs28602650	C	T	14304.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.88;QD=45.56;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	248525657	rs28718027	G	A	13919.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.28;QD=44.90;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	248525780	rs28698997	C	T	11953.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr1	248550894	rs7418152	T	G	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	248550970	rs7417616	A	G	14469.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	248550976	rs6587467	T	G	14744.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	248551203	rs6700947	T	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	248551560	rs954474	C	T	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	248551636	rs954475	T	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	248551883	rs28404805	C	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr1	248551955	rs28437787	C	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	248570440	rs6695780	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	248604397	rs79433366	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	248604454	rs113331655	CAT	C	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	248604465	rs76925977	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	248604542	rs61834485	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=47.99;MQRankSum=-2.480;QD=4.54;ReadPosRankSum=0.197;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	248604559	rs150497047	T	TTC	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.48;QD=43.59;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	248604614	rs201226597	A	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-1.952;QD=1.00;ReadPosRankSum=0.798;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr1	248604694	rs199872993	C	T	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.940;MLEAC=1;MLEAF=0.500;MQ=45.10;MQRankSum=-1.661;QD=11.84;ReadPosRankSum=0.615;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr1	248604765	rs144165631	T	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.18;QD=25.42;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	248605007	rs201970909	ACTT	A	1051.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-2.675;QD=22.86;ReadPosRankSum=1.544;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr1	248605183	rs149694364	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=14.121;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-4.248;QD=0.49;ReadPosRankSum=-1.905;SOR=3.526;set=HC	GT:AD:AF:DP	0/1:69,6:0.08:75
chr1	248605193	rs146225281	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=14.254;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-4.635;QD=0.47;ReadPosRankSum=-1.189;SOR=3.749;set=HC	GT:AD:AF:DP	0/1:72,7:0.09:79
chr1	248605245	rs140126980	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:88,41:0.32:129
chr1	248605314	rs115542894	C	T	4179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.818;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-9.350;QD=16.99;ReadPosRankSum=0.948;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:137,109:0.44:246
chr1	248605314	.	CAC	TAG	1253	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=24;MQ=48.99;NF=24;NR=26;PP=1253;QD=26.1293574972;SC=CTGCCTTCTACACCATCCTCA;SbPval=0.4;Source=Platypus;TC=122;TCF=54;TCR=68;TR=50;WE=248605324;WS=248605304;set=Platypus	GT:AD:AF:DP	0/1:72,50:0.41:122
chr1	248605316	rs116098680	C	G	4179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=-9.440;QD=17.06;ReadPosRankSum=0.779;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:134,111:0.45:245
chr1	248605354	rs140946811	C	CT	2029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=53.91;MQRankSum=-9.211;QD=9.48;ReadPosRankSum=3.090;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:127,87:0.41:214
chr1	248605395	rs28631666	T	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-11.623;QD=6.52;ReadPosRankSum=-1.480;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:100,57:0.36:157
chr1	248617173	rs78428672	A	G	1108.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-2.972;QD=28.43;ReadPosRankSum=-0.583;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:3,36:0.92:39
chr1	248617181	.	C	T	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.64;MQRankSum=-3.797;QD=36.79;ReadPosRankSum=-0.962;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr1	248636517	rs74154456	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	248636713	rs148805039	G	C	1672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=0.255;QD=8.67;ReadPosRankSum=0.589;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:107,86:0.45:193
chr1	248636794	.	C	CCCTCCTCAT	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.78;MQRankSum=-1.311;QD=20.93;ReadPosRankSum=0.242;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr1	248636837	rs143161564	C	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.682;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=41.98;MQRankSum=-0.819;QD=12.16;ReadPosRankSum=0.382;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr1	248636842	rs141174708	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.720;MLEAC=1;MLEAF=0.500;MQ=42.58;MQRankSum=1.418;QD=11.64;ReadPosRankSum=0.153;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	248636934	rs148766825	G	T	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=47.54;MQRankSum=-7.127;QD=7.55;ReadPosRankSum=0.357;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:114,79:0.41:193
chr1	248637367	rs1770108	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.564;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=7.101;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.077;QD=0.59;ReadPosRankSum=-2.506;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:493,71:0.13:564
chr1	248637381	rs139789199	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=-9.015;QD=0.71;ReadPosRankSum=-5.126;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:486,76:0.14:562
chr1	248637417	rs74711605	C	T	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=52.28;MQRankSum=-10.267;QD=0.75;ReadPosRankSum=-1.199;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:534,65:0.11:599
chr1	248637464	rs145778456	C	T	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=49.76;MQRankSum=-11.494;QD=1.01;ReadPosRankSum=2.935;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:571,109:0.16:680
chr1	248637480	rs74498773	A	G	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=48.69;MQRankSum=-11.678;QD=1.57;ReadPosRankSum=2.276;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:556,128:0.19:684
chr1	248637685	rs201431222	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	248651927	rs201060805	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.12;QD=22.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	248651959	rs76332972	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-2.054;QD=1.67;ReadPosRankSum=1.777;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr1	248652011	rs150528589	A	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.39;QD=24.86;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	248652023	rs139516854	G	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=24.85;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	248652071	rs199723306	G	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.79;QD=27.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	248685122	rs58955396	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr1	248685253	rs9727474	T	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:101,145:0.59:246
chr1	248685829	rs139958354	CAA	C	5076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.218;QD=22.56;ReadPosRankSum=-0.679;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:95,130:0.58:225
chr1	248722611	rs200169450	C	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.21;QD=46.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	248722613	rs199532952	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.11;QD=39.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	248722659	rs201896684	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.586;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=15.386;MLEAC=1;MLEAF=0.500;MQ=44.44;MQRankSum=-2.678;QD=0.84;ReadPosRankSum=-1.935;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr1	248722671	rs140437806	T	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=25.11;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	248722722	rs199528787	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.637;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=24.707;MLEAC=1;MLEAF=0.500;MQ=44.16;MQRankSum=-3.514;QD=9.15;ReadPosRankSum=2.916;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr1	248722738	.	T	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=10.941;MLEAC=1;MLEAF=0.500;MQ=46.31;MQRankSum=-0.349;QD=4.00;ReadPosRankSum=-4.669;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	248722739	rs200935922	G	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=11.302;MLEAC=1;MLEAF=0.500;MQ=46.49;MQRankSum=-1.026;QD=4.26;ReadPosRankSum=-3.652;SOR=2.242;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr1	248722777	rs77589892	T	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.00;QD=24.87;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	248722883	rs78125102	A	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=-1.623;QD=17.74;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	248722888	rs78981094	C	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.11;MQRankSum=-1.258;QD=20.70;ReadPosRankSum=-0.174;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	248737230	rs199863869	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.47;QD=29.70;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	248737246	.	G	A	698.77	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=30.38;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	248737259	rs189248971	C	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.90;QD=27.93;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	248737293	rs200427293	GC	AG	2693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=10.797;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.15;MQRankSum=-0.874;QD=37.41;ReadPosRankSum=1.499;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:6,66:0.92:72
chr1	248737319	rs77940099	G	A	2880.88	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:8,118:0.94:126
chr1	248737348	rs61833442	G	A	8067.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.955;MLEAC=2;MLEAF=1.000;MQ=55.63;MQRankSum=3.014;QD=40.95;ReadPosRankSum=0.111;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:10,187:0.95:197
chr1	248737351	rs78741389	G	A	8166.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.880;MLEAC=2;MLEAF=1.000;MQ=55.83;MQRankSum=3.191;QD=39.64;ReadPosRankSum=0.177;SOR=1.274;set=HC	GT:AD:AF:DP	1/1:10,196:0.95:206
chr1	248737511	rs150608839	A	G	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.35;QD=26.88;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	248737595	rs150601708	A	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=51.370;MLEAC=1;MLEAF=0.500;MQ=42.38;MQRankSum=-2.420;QD=24.14;ReadPosRankSum=2.790;SOR=4.796;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr1	248738086	rs28720062	A	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr1	248738183	rs1782199	G	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	248756167	rs61732484	C	G	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr1	248756411	rs28733753	T	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,57:0.53:108
chr1	248756474	rs28664620	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr1	248756994	rs28405936	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr1	248789454	rs1892441	G	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	248789504	rs1892442	T	C	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	248790075	rs1892443	A	G	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:159,180:0.53:339
chr1	248801480	.	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.129;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=15.268;MLEAC=1;MLEAF=0.500;MQ=50.09;MQRankSum=-2.916;QD=13.22;ReadPosRankSum=-0.780;SOR=4.285;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	248801488	.	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=4.591;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-2.764;QD=18.86;ReadPosRankSum=-3.442;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr1	248801505	.	T	TCA	1452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=10.370;MLEAC=1;MLEAF=0.500;MQ=50.49;MQRankSum=-1.867;QD=25.49;ReadPosRankSum=-3.246;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr1	248801511	.	A	G	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=10.573;MLEAC=1;MLEAF=0.500;MQ=50.63;MQRankSum=-1.556;QD=27.43;ReadPosRankSum=-1.851;SOR=2.073;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr1	248801514	.	AC	A	1791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=10.170;MLEAC=1;MLEAF=0.500;MQ=50.78;MQRankSum=-1.585;QD=29.86;ReadPosRankSum=-1.382;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr1	248801528	.	G	A	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.743;MLEAC=1;MLEAF=0.500;MQ=51.76;MQRankSum=-0.911;QD=31.01;ReadPosRankSum=0.164;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	248801538	.	G	A	2742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=11.725;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=0.208;QD=34.72;ReadPosRankSum=-0.103;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:14,65:0.82:79
chr1	248801542	rs372631772	A	G	3039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=15.746;MLEAC=1;MLEAF=0.500;MQ=52.35;MQRankSum=0.576;QD=36.62;ReadPosRankSum=0.063;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:13,70:0.84:83
chr1	248801550	rs374446105	C	T	3756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=13.934;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=1.306;QD=39.97;ReadPosRankSum=-0.528;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:10,84:0.89:94
chr1	248801556	rs79649486	C	T	4437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=15.502;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=1.880;QD=39.27;ReadPosRankSum=-0.610;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:9,104:0.92:113
chr1	248801566	rs74154510	T	G	5068.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=20.943;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=2.244;QD=39.91;ReadPosRankSum=0.601;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:8,119:0.94:127
chr1	248801592	rs78622116	C	T	6046.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.483;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=14.478;MLEAC=2;MLEAF=1.000;MQ=52.96;MQRankSum=2.944;QD=42.29;ReadPosRankSum=1.880;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:4,139:0.97:143
chr1	248801602	.	T	TCA	6172.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.530;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=13.363;MLEAC=2;MLEAF=1.000;MQ=52.67;MQRankSum=2.879;QD=42.57;ReadPosRankSum=2.427;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:4,141:0.97:145
chr1	248801610	rs150878651	G	A	6046.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-4.912;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=12.996;MLEAC=2;MLEAF=1.000;MQ=52.48;MQRankSum=2.771;QD=42.58;ReadPosRankSum=2.639;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:4,138:0.97:142
chr1	248801611	rs143981271	C	T	6081.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-4.291;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=12.996;MLEAC=2;MLEAF=1.000;MQ=52.48;MQRankSum=2.771;QD=42.83;ReadPosRankSum=2.670;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:4,138:0.97:142
chr1	248801633	rs74901534	A	G	5501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.040;MLEAC=2;MLEAF=1.000;MQ=52.26;MQRankSum=1.898;QD=42.98;ReadPosRankSum=0.852;SOR=0.112;set=HC	GT:AD:AF:DP	1/1:2,126:0.98:128
chr1	248801778	rs201643849	A	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=17.374;MLEAC=1;MLEAF=0.500;MQ=43.17;MQRankSum=-2.610;QD=15.55;ReadPosRankSum=2.821;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	248801944	rs143010547	TCAGCACG	T	11858.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-13.815;QD=24.60;ReadPosRankSum=1.453;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:181,301:0.62:482
chr1	248813126	rs1782238	G	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.367;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-3.775;QD=14.81;ReadPosRankSum=0.942;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	248813134	.	T	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-1.825;QD=12.57;ReadPosRankSum=-0.061;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	248813135	rs4916153	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=3.187;QD=9.35;ReadPosRankSum=0.764;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	248813139	rs146075383	C	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-1.419;QD=12.80;ReadPosRankSum=-0.951;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr1	248813161	rs140055914	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-0.332;QD=4.38;ReadPosRankSum=0.702;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr1	248813168	rs2802082	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-4.993;QD=2.72;ReadPosRankSum=-0.082;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr1	248813175	rs141470972	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-0.536;QD=2.68;ReadPosRankSum=2.023;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr1	248813196	rs149039063	CTTCAT	C	795.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:84,26:0.24:110
chr1	248813210	.	T	TTTAG	911.73	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:94,28:0.23:122
chr1	248813212	.	T	A	920.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:97,31:0.24:128
chr1	248813292	rs71199329	T	C	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=5.120;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-7.812;QD=6.97;ReadPosRankSum=-0.655;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:136,71:0.34:207
chr1	248813309	rs141113411	T	TA	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:134,49:0.27:183
chr1	248813343	rs1938148	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.834;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=55.45;MQRankSum=-7.461;QD=3.51;ReadPosRankSum=-4.693;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:115,19:0.14:134
chr1	248813350	rs144194611	G	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.266;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-7.541;QD=3.01;ReadPosRankSum=-5.385;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:111,18:0.14:129
chr1	248813352	rs147773385	G	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-7.132;QD=3.08;ReadPosRankSum=-5.087;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:110,16:0.13:126
chr1	248813421	rs200410497	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr1	248813473	rs78776291	A	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	248813542	rs77685347	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,78:0.50:155
chr1	248813650	rs199590470	CAGA	C	637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=15.283;MLEAC=1;MLEAF=0.500;MQ=45.73;MQRankSum=-3.159;QD=14.17;ReadPosRankSum=1.148;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	248813723	rs138825902	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=16.457;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-4.384;QD=2.18;ReadPosRankSum=0.343;SOR=3.033;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr1	248813749	rs151135924	G	A	1620.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.756;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=14.148;MLEAC=2;MLEAF=1.000;MQ=54.46;MQRankSum=4.416;QD=21.32;ReadPosRankSum=-0.162;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:7,69:0.91:76
chr1	248813901	rs144600224	A	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.79;QD=26.43;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	248813972	rs147604785	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=42.86;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.881;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	248814052	rs28533004	T	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=46.61;MQRankSum=-0.375;QD=5.06;ReadPosRankSum=-1.568;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:152,67:0.31:219
chr1	248814080	rs1782242	A	C	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	248814126	rs28418327	G	A	4984.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:60,230:0.79:290
chr1	248814209	rs148876159	GAT	G	2653.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.989;MLEAC=2;MLEAF=1.000;MQ=56.92;MQRankSum=1.801;QD=40.83;ReadPosRankSum=1.846;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:2,63:0.97:65
chr1	248814216	rs202080638	C	T	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-3.869;QD=15.58;ReadPosRankSum=-3.169;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr1	248814248	rs147484900	CATT	C	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	248845097	rs2000390	C	T	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	248845356	rs41311583	G	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr1	248845411	rs11485825	G	A	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	248845458	rs4509608	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr1	248845471	rs4575113	T	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:54,98:0.64:152
chr1	248845499	rs4462184	A	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	248902853	rs73148521	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=0.921;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	248903180	rs73148524	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr1	249107414	rs11205412	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	249107514	rs116192941	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.792;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	249108640	rs12031808	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr1	249108814	rs141021891	G	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr1	249109034	rs10888590	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	249110607	rs77871429	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	249120584	rs12081872	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,60:0.45:133
chr1	249120631	rs115160731	C	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:142,74:0.34:216
chr1	249120650	rs141470370	TC	T	2711.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:149,76:0.34:225
chr1	249120652	rs202006982	C	T	2720.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:151,77:0.34:228
chr1	249120684	rs11205415	T	G	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	249120794	rs11205416	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr1	249145072	rs11434456	C	CA	8471.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	249149486	rs12135449	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	249149747	rs73152349	T	C	4925.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:198,245:0.55:443
chr1	249150116	rs13313088	G	C	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:76,113:0.60:189
chr1	249150205	rs13313009	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr1	249208541	rs78367748	C	T	70.84	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	249208772	rs12025972	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	249210707	rs6704311	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	45495	rs199564617	C	T	4961.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:263,249:0.49:512
chr2	45895	rs4241318	A	G	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	218992	rs142989700	T	C	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:158,142:0.47:300
chr2	225060	rs145621907	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=-0.296;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	253291	rs34931255	A	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	264895	rs4854300	G	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	271998	rs112400131	CA	C	2171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=4.745;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.630;QD=9.61;ReadPosRankSum=0.766;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:48,178:0.79:226
chr2	273070	rs12714403	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	275055	rs144670341	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.52;ReadPosRankSum=1.797;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	279918	.	G	GT	39	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=11;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=39;QD=12.75;SC=TTCCTTTTGTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=4;WE=279926;WS=279912;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	283231	rs368562757	A	AT	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	287448	.	TAAAA	T	383.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.32;ReadPosRankSum=0.794;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	675831	rs2293084	G	T	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr2	676177	rs2293083	C	G	7671.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr2	676457	rs2293082	G	C	25514.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr2	676478	rs3215297	T	TGTAA	31709.73	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr2	677213	rs3749138	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	677537	rs116163306	A	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr2	1079143	rs4971431	A	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:114,117:0.51:231
chr2	1079320	rs4971432	C	T	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:129,135:0.51:264
chr2	1133367	rs79642551	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:92,62:0.40:154
chr2	1161290	rs61744694	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:145,124:0.46:269
chr2	1168756	rs4597564	G	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr2	1168920	rs377143521	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.114;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	1168982	rs7560649	T	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	1204765	rs115618406	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.132;QD=6.29;ReadPosRankSum=-1.443;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr2	1204796	rs6751090	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr2	1205003	rs28495529	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr2	1241592	rs146197111	C	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	1251214	rs367595548	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:160,60:0.27:220
chr2	1320143	rs4927635	C	T	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr2	1320300	rs35466197	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	1320304	rs74994128	CG	AC	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	1418192	rs9678281	C	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr2	1426787	rs2276701	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:107,113:0.51:220
chr2	1426796	rs28909372	G	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:120,122:0.50:242
chr2	1426940	rs28909374	G	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr2	1437163	rs1473936	A	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	1440299	rs28909386	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	1442381	rs76046082	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr2	1442417	rs4425120	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	1442476	rs1969248	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	1442551	rs3036132	ATTTT	A,ATTT	5369.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.300;QD=24.30;ReadPosRankSum=-0.097;SOR=0.816;set=HC	GT:AD:AF:DP	1/2:13,122,86:0.55,0.39:221
chr2	1457364	rs2070881	A	G	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr2	1459806	rs4927610	A	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	1460004	rs4927611	G	T	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	1460140	rs4927612	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	1481070	rs28910597	C	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:125,122:0.49:247
chr2	1481155	rs2280132	G	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr2	1481231	rs2175977	G	C	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	1481315	rs61758082	C	G	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:100,88:0.47:188
chr2	1488668	rs6715129	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr2	1491420	rs28911483	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr2	1491497	rs6727192	T	C	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.828;QD=21.92;ReadPosRankSum=1.757;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:39,54:0.58:93
chr2	1491506	rs141861673	G	A	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.33;ReadPosRankSum=2.019;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr2	1491510	rs72230434	CA	C	1020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=2.339;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:48,56:0.54:104
chr2	1497442	rs9679267	A	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr2	1500112	rs370762547	TGGGGCGGGGC	T	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-2.361;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr2	1520676	rs1126799	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	1520844	rs28913016	G	A	2936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=1.771;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:144,151:0.51:295
chr2	1544461	.	C	CACCGCAGCGG	1933.73	.	AC=1;AF=0.500;AN=2;DP=411;set=Intersection	GT:AD:AF:DP	0/1:218,109:0.33:327
chr2	1544617	rs12615819	G	A	9690.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	1643295	rs115891914	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr2	1647171	rs6730800	T	C	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:214,190:0.47:404
chr2	1647186	rs111450110	G	A	5438.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:259,266:0.51:525
chr2	1652822	rs1863135	T	G	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr2	1664654	rs17841813	A	G	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr2	1667267	rs2241455	C	G	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	1667310	rs12475392	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	1687263	rs138434519	TC	T	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	1687266	rs115883224	T	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	1747993	rs62116430	G	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	1805325	rs113480628	A	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr2	1842968	rs6728368	T	C	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	1843130	rs59128763	G	A	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:237,190:0.44:427
chr2	1843285	rs10196494	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.39;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	1844458	rs4381806	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	1844670	.	TTCTTTC	T	66.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=0.722;QD=4.17;ReadPosRankSum=0.910;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	1844671	.	TC	T	319.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.433;QD=19.98;ReadPosRankSum=-0.789;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	1844675	.	TC	T	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.433;QD=19.98;ReadPosRankSum=-1.032;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	1890173	rs4853824	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	1890415	rs201650176	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:152,131:0.46:283
chr2	1890519	rs142676552	G	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr2	1891319	rs201165480	G	C	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:163,126:0.44:289
chr2	1921122	rs7562694	C	T	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:218,240:0.52:458
chr2	1926437	rs1529667	G	T	13384.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr2	1946646	rs7355555	A	C	4279.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:279,217:0.44:496
chr2	1946914	rs3748988	A	G	5502.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:337,295:0.47:632
chr2	1982850	rs79450527	C	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:140,148:0.51:288
chr2	1982915	rs3214602	GA	G	9068.73	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:1,415:1.00:416
chr2	1983374	rs2304008	A	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	1983619	rs7561518	A	G	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	3193039	rs57607506	C	T	2501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.178;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:177,138:0.44:315
chr2	3196471	rs73129592	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	3200948	rs1037467	C	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	3212247	rs7584823	G	T	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	3212371	rs115962598	T	G	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:232,238:0.51:470
chr2	3212481	rs17327576	C	T	9347.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:503,469:0.48:972
chr2	3217777	rs11127386	A	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	3217794	rs10865535	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	3217908	rs11682452	G	C	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.010;QD=10.10;ReadPosRankSum=0.993;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:101,97:0.49:198
chr2	3261173	rs10188932	A	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,104:0.47:222
chr2	3277947	rs2694081	T	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	3322797	rs12618407	C	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,78:0.44:177
chr2	3341643	rs116732491	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr2	3342009	rs3811617	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	3356850	rs12479261	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	3356953	rs2875394	A	T	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	3356995	rs62119517	G	A	3616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.325;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:177,186:0.51:363
chr2	3358295	rs12612251	T	C	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr2	3358458	rs146001084	ATTATGAAGTTAGAT	A	4815.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	3381189	rs13022433	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr2	3391913	rs184956144	C	T	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:204,170:0.45:374
chr2	3392075	rs10865541	T	C	31714.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.50;ReadPosRankSum=1.221;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,1196:1.00:1197
chr2	3392513	rs12999423	TT	CA	27760.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr2	3393565	rs71396985	C	CAA	4432.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:150,119:0.44:269
chr2	3425514	rs7558487	G	C	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:133,100:0.43:233
chr2	3425935	rs73129502	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	3425948	rs10206964	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	3428450	rs112370205	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr2	3460870	rs7579428	T	C	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	3461369	rs73131601	C	T	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,133:0.53:251
chr2	3463978	rs10182502	G	A	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:124,120:0.49:244
chr2	3464169	rs10192109	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	3469463	rs4971514	G	C	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr2	3469506	rs35561008	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	3470115	rs7593516	T	C	14105.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chr2	3470254	rs11677515	T	G	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	3481451	rs73910562	A	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr2	3481637	rs4535074	T	C	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	3481659	rs4321399	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr2	3481716	rs4535075	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	3482598	rs73910563	A	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr2	3482722	rs13003061	C	T	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:149,141:0.49:290
chr2	3482796	rs11890651	T	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr2	3483181	rs13986	C	T	5912.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:287,293:0.51:580
chr2	3483205	rs6767	C	T	11690.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr2	3483390	rs7569694	T	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	3483407	rs56353243	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	3488502	rs9752130	A	G	17504.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr2	3502709	rs10208494	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr2	3502909	rs10627319	A	ACTT	9236.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;MQRankSum=0.300;QD=26.54;ReadPosRankSum=1.365;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:2,346:0.99:348
chr2	3502910	rs58219575	G	T	15384.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=46.76;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	3502932	rs10194787	G	A	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.296;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:119,108:0.48:227
chr2	3504290	rs6146601	GTGTACCTGCCGCCGCA	G	3598.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	3504687	rs9950	A	G	13089.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr2	3504819	rs34240449	A	G	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	3504893	rs35008570	G	GA	1017.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	3518643	rs7566663	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	3523324	rs10179340	A	G	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr2	3523444	rs6751350	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=1.981;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	3579760	rs1071625	T	C	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	3597974	rs10186193	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	3600012	rs151141402	CCTCT	C	1389.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	3605468	rs12711976	A	G	9793.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	3627648	rs7576238	G	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	3652616	rs3769507	G	C	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	3653576	rs7604806	A	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	3653842	rs72767191	C	A	3276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-2.101;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:149,157:0.51:306
chr2	3653842	.	CCT	ACC	1188	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=24;MQ=59.92;NF=32;NR=53;PP=1188;QD=14.6055044101;SC=AGGTCAGTAGCCTGCACTGGT;SbPval=0.59;Source=Platypus;TC=186;TCF=72;TCR=114;TR=85;WE=3653852;WS=3653832;set=Platypus	GT:AD:AF:DP	1/0:101,85:0.46:186
chr2	3653844	rs3739147	T	C	10569.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.59;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	3653888	rs7561319	G	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr2	3660869	rs17017752	G	A	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.375;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:158,102:0.39:260
chr2	3661002	rs67826307	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr2	3685046	rs3811528	T	C	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=46.06;SOR=2.035;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	3685049	rs36024497	G	T	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=45.37;SOR=1.897;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	3685054	rs11889073	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=42.56;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	3685074	rs3811527	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	3688029	.	T	C	45	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=4;HapScore=4;MGOF=7;MMLQ=24;MQ=56.11;NF=0;NR=2;PP=45;QD=39.8856062736;SC=CACCCACCCCTGTCACATCCC;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=3688050;WS=3688019;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr2	3688042	.	A	G	45	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=4;MGOF=7;MMLQ=24;MQ=54.05;NF=0;NR=2;PP=45;QD=39.8856062736;SC=CACATCCCACAGTGGACACCC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=3688050;WS=3688019;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr2	3688738	rs17017806	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr2	3688739	rs13399202	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr2	3688837	rs111685093	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr2	3688910	rs113226829	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	3691065	rs34351135	G	A	5246.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:248,267:0.52:515
chr2	3691548	rs7567833	A	G	17588.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:6,688:0.99:694
chr2	3718646	rs60644898	G	A	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.81;ReadPosRankSum=0.113;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:25,50:0.67:75
chr2	3718655	rs59726279	A	G	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=0.193;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:30,57:0.66:87
chr2	3718692	rs13409104	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr2	3721632	rs13390724	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	3721637	rs72082952	ATCTT	A	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	3721729	rs12105179	A	G	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	3721821	rs13406032	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr2	3726163	rs2043080	T	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr2	3726244	rs13420871	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	3729254	rs13426642	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:113,87:0.43:200
chr2	3744990	rs35124934	G	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:137,103:0.43:240
chr2	3748971	rs6730148	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr2	3749119	rs6730396	T	C	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:134,104:0.44:238
chr2	3749151	rs66473381	GGAA	G	3126.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:107,83:0.44:190
chr2	3751313	rs115046948	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	3756073	rs17505481	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.99;ReadPosRankSum=-2.003;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	3774436	rs357940	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	3774448	rs12711970	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr2	3774494	rs13394251	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:111,94:0.46:205
chr2	3774519	rs357941	T	C	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	3800383	rs357969	C	T	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:210,162:0.44:372
chr2	3800496	rs357968	C	T	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:133,123:0.48:256
chr2	3815250	rs10180257	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	3815549	rs6752919	G	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr2	3826290	rs56882965	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	3826656	rs72437937	CCAGT	C	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	4672834	rs71906919	CTG	C	1174.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	5834249	rs3841075	G	GTGA	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	7001231	.	ACACG	A	221	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=4;MGOF=44;MMLQ=27;MQ=59.85;NF=8;NR=11;PP=221;QD=12.7368421053;SC=GTATACACACACACGCACACA;SbPval=0.58;Source=Platypus;TC=38;TCF=16;TCR=22;TR=19;WE=7001243;WS=7001217;set=Platypus	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	7001233	rs3085147	ACG	A	1634.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.949;QD=20.69;ReadPosRankSum=-2.201;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:25,54:0.68:79
chr2	7001235	rs2712047	G	A	381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.988;QD=4.83;ReadPosRankSum=2.451;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr2	7001257	.	ACC	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=8.516;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.95;ReadPosRankSum=1.196;SOR=1.989;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr2	7003680	rs77719173	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:100,70:0.41:170
chr2	7005069	rs2595172	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:85,89:0.51:174
chr2	7005369	rs11678810	A	G	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	7005992	rs4669108	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	7006066	rs145876640	C	G	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,79:0.52:152
chr2	7006231	rs116006016	C	T	6028.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:298,299:0.50:597
chr2	7017903	rs10182815	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr2	7019117	rs56324932	A	G	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:160,157:0.50:317
chr2	7046272	.	TACACACAC	T,TAC	2703.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.22;SOR=4.840;set=HC	GT:AD:AF:DP	1/2:0,54,25:0.68,0.32:79
chr2	7050426	rs6725201	G	C	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:121,110:0.48:231
chr2	7050483	.	A	ATGTGTGTG	729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-0.857;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr2	7076975	rs55971680	A	AGTGT	144.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	7130521	rs1622254	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=2.154;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	7137067	rs364891	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	7154632	rs309325	T	C	11152.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	7154826	rs3215278	AT	A	1575.73	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:100,102:0.50:202
chr2	7164483	rs6709878	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:103,90:0.47:193
chr2	7170388	rs377057460	CTGTGTGTGTGTGTGTG	C,CTGTGTGTGTGTG	3367.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=285;set=Intersection	GT:AF:DP	1/2:0.66,0.33:111
chr2	7243449	rs10617957	AGTGTGT	A	4711.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:115,133:0.54:248
chr2	7403641	.	T	TACACACACACAC	897.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr2	7403703	rs79089787	T	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:63,75:0.54:138
chr2	7409989	rs10548278	TTG	T	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.558;QD=1.29;ReadPosRankSum=-0.945;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:164,28:0.15:192
chr2	7421557	rs4668533	C	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	7421569	rs368940217	CTG	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.114;QD=2.26;ReadPosRankSum=-0.831;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr2	7421778	rs4668534	A	T	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	7421860	rs57998976	A	T	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	7471479	.	T	TTC	577	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=3;MGOF=13;MMLQ=27;MQ=59.95;NF=9;NR=15;PP=577;QD=25.1666666667;SC=CTCTTTGTCTTTCACACACAC;SbPval=0.66;Source=Platypus;TC=69;TCF=28;TCR=41;TR=24;WE=7471492;WS=7471469;set=Platypus	GT:AD:AF:DP	0/1:45,24:0.35:69
chr2	7471480	.	TCA	T	477.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:120,35:0.23:155
chr2	7471482	rs79431403	A	T	862.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.335;QD=5.57;ReadPosRankSum=-0.875;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:100,55:0.35:155
chr2	7471732	rs6732990	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	7540646	rs5829105	C	CA	1636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=1.424;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:81,68:0.46:149
chr2	7540695	rs2163257	C	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr2	7540784	rs4669196	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	7594516	rs1466671	G	A	23121.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr2	7594520	rs1466672	C	T	14066.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-1.637;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:2,545:1.00:547
chr2	8822892	.	CAAA	C	3808.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.313;QD=29.99;ReadPosRankSum=-0.184;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:6,121:0.95:127
chr2	8822912	rs3845751	A	C	5682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.943;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.163;QD=33.23;ReadPosRankSum=0.977;SOR=0.175;set=HC	GT:AD:AF:DP	1/1:2,169:0.99:171
chr2	8866844	rs13024421	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	8867158	rs139259040	TAAG	T	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	8870814	rs6431959	A	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	8871342	rs1044280	C	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:105,110:0.51:215
chr2	8897788	rs79399794	C	A	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:199,200:0.50:399
chr2	8898036	rs6750682	A	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr2	8910717	rs10929557	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	8910987	rs12476359	A	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	8916847	rs4669338	A	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	8918648	rs59450450	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	8937055	rs75269969	GT	TC	7091.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;JOINED;set=Intersection	GT:AD:AF:DP	0/1:147,182:0.55:329
chr2	8943291	rs2356658	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr2	8946341	rs73151212	C	A	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.956;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:92,83:0.47:175
chr2	8998624	rs10929559	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	9347407	rs370836601	A	C	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.453;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:92,83:0.47:175
chr2	9419411	rs10193043	G	A	4192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.874;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:128,108:0.46:236
chr2	9419415	rs10170149	C	T	4212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-0.537;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:135,112:0.45:247
chr2	9419583	rs10193254	G	A	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr2	9419608	rs41264165	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:66,85:0.56:151
chr2	9437413	rs3811600	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr2	9437628	.	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,66:0.43:152
chr2	9458460	rs3811599	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	9458798	rs13426594	G	A	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:114,82:0.42:196
chr2	9463454	rs12475160	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr2	9467815	rs7569295	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr2	9484542	rs6724103	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	9484561	rs79044067	TAAAA	T	3916.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	9491017	rs4669385	C	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	9496291	rs2709591	T	C	11530.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr2	9498766	rs59670261	A	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	9520949	rs59968284	A	C	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:151,128:0.46:279
chr2	9528536	rs2715860	G	C	14660.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr2	9528801	rs3811594	T	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr2	9541381	rs11682319	G	T	9009.77	.	AC=1;AF=0.500;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	0/1:513,463:0.47:976
chr2	9547171	rs10929579	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	9554255	rs10208358	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	9554461	rs10185646	C	A	9601.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr2	9569972	rs7589401	A	T	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	9571054	rs2002044	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	9576553	rs6432003	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	9580540	rs111411247	G	GT	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	9583822	rs34762720	A	AG	5369.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:173,202:0.54:375
chr2	9583922	rs11681316	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr2	9588551	rs76965897	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr2	9599564	rs16867031	A	G	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-2.114;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:104,80:0.43:184
chr2	9599767	.	CTTTT	C	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=17.041;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.418;QD=17.62;ReadPosRankSum=2.074;SOR=1.846;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	9601417	rs74618679	C	T	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:249,222:0.47:471
chr2	9613289	rs2001658	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	9614610	rs186382150	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr2	9615458	rs183263259	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:106,83:0.44:189
chr2	9615556	rs6432007	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	9624553	rs6759574	T	G	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:159,140:0.47:299
chr2	9624704	rs59980881	C	CG	1083.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr2	9630231	rs6705408	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	9630244	rs3833563	AT	A	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	9630538	rs79932015	G	A	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:135,121:0.47:256
chr2	9633137	rs4622692	T	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	9634856	rs1048610	A	G	9033.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	9634942	rs35975089	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,47:0.39:121
chr2	9661184	rs4328603	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr2	9666200	rs188575467	A	T	514.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr2	9667798	rs146113731	GC	G	144.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr2	9667930	rs2230818	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:77,107:0.58:184
chr2	9695906	rs12692386	A	G	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	9981672	rs112717131	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	9981745	.	T	TA	977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.642;QD=7.76;ReadPosRankSum=0.274;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:56,70:0.56:126
chr2	9983591	rs35818430	A	AG,AGGCTTCTCCGGCCGGAAG	7632.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=44.38;SOR=0.765;set=HC	GT:AD:AF:DP	1/2:0,95,77:0.55,0.45:172
chr2	9983716	rs385513	A	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr2	9985341	rs3214586	TC	T	5774.73	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:182,198:0.52:380
chr2	9991556	rs287991	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	9991856	rs116177682	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	10045014	rs400917	C	T	5547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=-0.220;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:160,141:0.47:301
chr2	10045024	rs396190	G	A	5703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.546;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:183,157:0.46:340
chr2	10045147	rs448327	A	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:161,126:0.44:287
chr2	10059097	rs2303921	A	C	3955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=1.705;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:242,208:0.46:450
chr2	10085456	rs73163656	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	10094992	rs2303918	A	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	10095185	rs16867251	T	C	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:138,137:0.50:275
chr2	10095374	rs13401891	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	10101128	rs77464454	A	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.271;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:60,58:0.49:118
chr2	10101468	rs16867256	A	G	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:119,130:0.52:249
chr2	10104284	rs76112464	T	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr2	10105584	.	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.462;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:90,20:0.18:110
chr2	10126129	rs76200717	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	10126182	rs76812234	A	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr2	10126330	rs2303920	G	A	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:146,121:0.45:267
chr2	10126416	rs16867274	A	G	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	10130737	rs80260543	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr2	10130973	rs12475243	T	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:92,74:0.45:166
chr2	10133728	rs6711126	T	C	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	10133820	rs6750565	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr2	10135855	rs11674576	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	10135956	rs41264205	G	A	11880.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr2	10138965	.	CGT	C	53	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=1;HapScore=2;MGOF=67;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=53;QD=48.0;SC=TATATATATACGTATATATAT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=10138974;WS=10138955;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	10139015	.	T	TATAC	236	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=4;MGOF=32;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=236;QD=63.5;SC=CACATATATATACATATATAT;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=10139025;WS=10139005;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	10139017	.	C	T	81	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=4;MGOF=32;MMLQ=27;MQ=59.16;NF=5;NR=3;PP=81;QD=14.4714015684;SC=CATATATATACATATATATAT;SbPval=0.75;Source=Platypus;TC=9;TCF=5;TCR=4;TR=8;WE=10139025;WS=10139005;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	10140651	rs2163338	A	G	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	10183748	rs372827624	TGCC	T	584.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr2	10188649	rs11687357	A	T	11358.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	10225215	rs55815895	G	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	10225241	rs6432058	C	T	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	10226306	rs34098251	G	GC	5620.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	10262667	rs72542782	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr2	10262920	rs1130609	T	G	9214.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	10264057	rs6432065	T	C	9416.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr2	10281903	rs5829249	G	GC	4417.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	10282147	rs11896140	T	C	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:212,184:0.46:396
chr2	10332539	rs13392520	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	10563090	rs113132017	T	A	2986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.411;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:164,152:0.48:316
chr2	10563233	rs2270304	G	A	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr2	10563297	rs2270305	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr2	10564528	rs11674615	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr2	10580967	rs1049500	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	10584022	rs3752661	T	C	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	10585311	rs2302614	A	C	147.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	10595578	rs6432097	T	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:117,83:0.41:200
chr2	10712278	rs3732114	C	T	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:78,131:0.63:209
chr2	10729897	rs759403	C	T	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.986;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	10740841	rs4668692	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	10743153	rs2287061	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr2	10743191	rs2287062	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr2	10743319	rs2287063	T	C	3624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=0.842;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:147,185:0.56:332
chr2	10747246	rs6744854	C	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	10747271	rs6759740	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	10747298	rs71392244	A	AT	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr2	10762302	rs70953325	TA	T	9323.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr2	10784491	rs3732111	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr2	10784528	rs3821196	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=0.542;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	10798051	rs150796207	G	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr2	10798082	rs115687403	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr2	10799467	rs35723682	TG	T	1091	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.19;ReadPosRankSum=0.323;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr2	10799474	.	G	T	1129.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.774;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.45;ReadPosRankSum=-1.065;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	10803063	rs2069003	T	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:121,147:0.55:268
chr2	10803220	rs145311909	T	C	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=1.183;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:85,76:0.47:161
chr2	10803242	.	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr2	10808776	rs55925118	C	CAA	4406.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	10813535	rs147818324	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-1.237;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	10813631	rs73169908	T	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.831;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:39,38:0.49:77
chr2	10813782	rs6748766	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	10824609	rs138511381	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,75:0.48:155
chr2	10863250	rs73914806	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	10911891	rs1198850	T	C	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	10912153	rs2171773	T	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	10915090	rs58188788	T	A	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:177,141:0.44:318
chr2	10922516	rs1686482	A	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr2	10924312	rs202243910	TG	T	2888.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr2	10924524	rs1198873	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	10927345	rs1686510	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	10928694	rs11409434	G	GA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.046;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	10928710	rs1734433	A	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.297;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr2	10928777	rs2952626	A	C	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:154,184:0.54:338
chr2	10928906	rs1734432	T	C	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:165,175:0.51:340
chr2	10928962	rs1734431	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:139,102:0.42:241
chr2	10929133	rs1734430	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr2	10929867	rs11904084	T	C	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=2.534;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:118,117:0.50:235
chr2	10930050	rs1686514	A	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	10930106	rs200934850	ATTTT	A	273.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.43;ReadPosRankSum=-1.465;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	10930903	rs4807	T	C	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:242,248:0.51:490
chr2	10931001	rs1614107	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr2	10932082	rs1734421	T	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr2	10933249	rs4799	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:232,177:0.43:409
chr2	10933346	rs143770934	T	TAGGC	1980.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	10937037	rs1734343	T	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	10937065	rs1734344	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	10937409	rs1686444	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr2	10938043	rs56346617	T	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.179;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	10942567	rs1686434	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	10942687	rs4758	C	T	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:276,167:0.38:443
chr2	10950284	rs1734449	G	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr2	10952790	rs6726687	T	C	4550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.877;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:261,239:0.48:500
chr2	10961184	rs1686497	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	10977739	rs114314177	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr2	10994418	rs1198852	T	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	11053020	rs3732104	A	G	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,420:1.00:421
chr2	11053353	rs114664009	C	T	6208.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:257,299:0.54:556
chr2	11053830	rs61741190	G	A	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:189,193:0.51:382
chr2	11245666	rs368396597	G	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr2	11260874	rs79428888	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	11261092	rs78695173	T	G	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:100,123:0.55:223
chr2	11264830	rs7560331	G	A	5682.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:287,285:0.50:572
chr2	11273407	.	G	GTC,GTCTC	1804.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=571;set=Intersection	GT:AF:DP	0/1:0.20:489
chr2	11273436	.	G	GCACACACACA	5691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;ClippingRankSum=0.000;DP=826;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.46;ReadPosRankSum=2.065;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:561,202:0.26:763
chr2	11273458	rs61399885	A	AC	5735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-2.300;QD=6.61;ReadPosRankSum=-1.469;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:630,238:0.27:868
chr2	11273757	rs6733410	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	11280458	rs59988359	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	11280500	rs138426688	TAA	T	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.838;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr2	11283965	rs6432178	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr2	11284025	rs6432179	C	T	4819.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:230,235:0.51:465
chr2	11295226	rs148805827	C	CG	1081.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=30.91;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	11295247	.	G	GGGGCGAGGCGAGGTTGGCCAGA	1220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.957;QD=26.54;ReadPosRankSum=1.243;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	11295411	.	G	GGGGGC	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.902;QD=5.80;ReadPosRankSum=-0.329;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr2	11295464	.	A	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.034;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr2	11295867	rs7598570	G	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	11300869	rs6432182	T	C	11117.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:1,436:1.00:437
chr2	11300927	rs59329825	TAAA	T,TA	1815.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.274;QD=24.21;ReadPosRankSum=-1.565;SOR=0.576;set=HC	GT:AD:AF:DP	1/2:4,33,38:0.44,0.51:75
chr2	11304471	rs57784960	A	T	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=9.060;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.066;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr2	11312224	rs3732103	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	11332238	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	11335010	.	T	TTTTG	808.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	11348364	rs141148984	C	CTAACT	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	11348609	rs5829297	CAAAT	C	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	11356190	rs726843	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	11357100	rs57554471	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	11359003	rs375982785	C	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=0.431;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	11359031	rs9808228	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	11359120	rs2230774	G	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	11680962	rs73915410	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	11696637	rs79864132	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	11696674	rs10197364	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr2	11706693	rs4669751	T	C	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr2	11706730	rs13383579	C	T	4575.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:241,232:0.49:473
chr2	11706892	rs6740248	C	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	11718591	rs1529868	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr2	11725908	rs6744817	G	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	11727507	rs13394619	G	A	16577.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr2	11731774	rs2358040	T	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	11732883	rs115441317	C	T	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr2	11733276	rs111758720	C	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr2	11735251	rs76417179	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	11736305	rs36030386	G	A	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	11741193	rs11681838	C	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr2	11742496	rs77163399	CA	TG	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	11750654	rs116699397	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr2	11752635	rs2304399	T	C	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	11755316	rs16857699	C	T	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:165,155:0.48:320
chr2	11757009	rs6735957	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	11757023	rs892868	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	11758703	rs61741337	G	A	7805.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:357,382:0.52:739
chr2	11767282	rs7562399	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr2	11774147	rs114957560	C	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr2	11774324	rs2304402	G	A	6556.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:309,325:0.51:634
chr2	11774391	rs115587270	A	G	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:265,276:0.51:541
chr2	11775611	rs115695413	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr2	11778184	rs33962728	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	11780676	rs116203897	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:79,82:0.51:161
chr2	11798965	.	A	G	379.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	11802146	rs34764121	C	T	4537.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:202,228:0.53:430
chr2	11810095	rs6432225	G	A	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:143,162:0.53:305
chr2	11854012	rs10182021	G	A	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	11905636	rs3214670	GT	G	4416.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.186;QD=20.64;ReadPosRankSum=1.144;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:5,209:0.98:214
chr2	11905876	rs10209969	C	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr2	11924950	rs3795974	T	C	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	11932173	rs7561070	G	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	11936798	rs2577264	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	11944397	rs28754664	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	11944746	rs111652164	TG	T	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	11959905	rs2716609	T	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr2	12864613	rs6432324	T	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	12877501	rs5829384	G	GA	15522.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr2	12877609	rs7604252	C	T	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:279,252:0.47:531
chr2	12877695	rs7564991	A	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr2	14775835	rs149856983	T	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr2	15319070	rs5829492	TA	T	894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.880;QD=6.94;ReadPosRankSum=0.149;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:59,70:0.54:129
chr2	15372731	rs10929352	T	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr2	15374607	rs139196278	T	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr2	15378822	rs140225141	G	GAATT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	15415525	rs3755127	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	15417280	rs3214432	ATT	A	1579.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	15417285	rs75287593	T	A	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	15427173	rs4668892	C	T	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	15448311	rs1318102	A	T	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	15468025	rs2042145	T	C	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:158,189:0.54:347
chr2	15471002	rs6759219	C	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	15491952	.	TCA	T	2986	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=1;MGOF=106;MMLQ=21;MQ=60.0;NF=51;NR=57;PP=2986;QD=20;SC=ATGTTATATTTCACACACACA;SbPval=0.4;Source=Platypus;TC=115;TCF=58;TCR=57;TR=108;WE=15491961;WS=15491942;set=Platypus	GT:AD:AF:DP	1/0:7,108:0.94:115
chr2	15491994	rs10605991	GCACACACACA	G,GCACACA	10267.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=360;set=Intersection	GT:AF:DP	1/2:0.59,0.40:286
chr2	15493881	rs2277915	A	G	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-1.668;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:55,43:0.44:98
chr2	15519992	rs2058866	G	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	15523266	rs6756934	A	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	15523307	rs3834149	TA	T	1052.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=21.05;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	15523549	rs3755129	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	15533689	rs2380650	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	2097.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=61.70;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	15533779	rs9710889	G	A	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.07;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	15533884	rs9710962	C	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=41.37;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	15533895	rs13417550	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	15533899	rs11689153	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.90;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	15564718	rs10929367	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	15567649	rs3796002	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	15601287	rs11411624	A	AT	2651.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.00;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	15601441	rs7590340	C	T	10532.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr2	15601574	rs7590458	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	15607842	rs4668909	T	C	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.776;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:55,75:0.58:130
chr2	15608013	rs4668910	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	15608705	rs57866666	T	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr2	15614404	rs13014906	T	C	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	15615910	rs1990754	A	G	12944.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr2	15616013	rs1990755	C	G	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	15616030	rs1990756	C	T	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	15618339	rs1125534	G	A	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	15623608	rs10201564	C	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	15623608	.	CCG	GCA	61	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=27;MQ=60.0;NF=3;NR=5;PP=61;QD=14.3084843578;SC=AAAATTAAGGCCGAAAATGAG;SbPval=0.59;Source=Platypus;TC=11;TCF=4;TCR=7;TR=8;WE=15623618;WS=15623598;set=Platypus	GT:AD:AF:DP	1/1:3,8:0.73:11
chr2	15623610	rs79264042	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.32;ReadPosRankSum=-0.116;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	15644107	rs3732002	C	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.896;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	15644111	rs3732003	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.16;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	15644401	rs2287265	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	15674686	rs13029846	T	C	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:184,120:0.39:304
chr2	15676686	rs10208972	G	A	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	15676703	rs57935128	T	TA	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.751;QD=5.67;ReadPosRankSum=0.771;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:52,48:0.48:100
chr2	15678368	rs7595512	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	15678482	rs2380657	T	C	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	15678501	rs66736557	GA	G	2391.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	15679609	rs2058868	A	T	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	15691886	rs7572131	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.15;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	15694164	rs34789730	T	TA	6484.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	15698614	rs16862767	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	15698665	rs149405870	TA	T	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.155;QD=12.59;ReadPosRankSum=0.386;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	15731998	rs10221770	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	15732238	rs73915402	G	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.31;ReadPosRankSum=0.852;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	15735648	rs2302929	T	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:139,113:0.45:252
chr2	15737698	rs2302932	G	A	123.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	15739664	rs141927898	T	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	15744484	rs35195784	CT	C	226.92	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr2	15746105	rs141520016	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:87,59:0.40:146
chr2	15746220	rs41264195	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr2	15747393	rs10929378	C	T	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	15753279	rs2302934	C	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	15753307	rs3217220	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.361;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	15768671	rs115916140	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr2	15884556	rs1559033	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	16743453	rs6751062	A	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	16746897	rs62122698	C	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	16769276	rs144638823	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr2	17697805	rs140288497	A	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,13:0.22:58
chr2	17697870	rs150308334	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr2	17836722	.	TCA	T	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.358;QD=5.79;ReadPosRankSum=1.564;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	17883218	rs11681696	T	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	17884495	rs1065381	C	T	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	17888457	rs6734462	G	A	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	17889918	rs6711251	C	T	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:225,231:0.51:456
chr2	17890091	rs10657992	G	GTATA	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=40.23;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	17898326	rs12469221	C	T	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	17913266	rs2052746	A	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	17927275	rs12474069	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	17950100	rs184695798	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	17954027	rs300175	G	A	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	17955694	rs73218899	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	17959405	rs143973077	G	GTA	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	17998025	rs34069439	A	T	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:143,141:0.50:284
chr2	17998095	rs35858730	C	T	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:133,147:0.53:280
chr2	17998331	rs13001625	T	C	9449.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:501,472:0.49:973
chr2	18112473	rs4240213	G	A	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:176,179:0.50:355
chr2	18113623	rs4832524	A	G	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:181,187:0.51:368
chr2	18745466	rs74349222	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	18757501	rs3902946	G	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr2	18768850	rs16985306	A	G	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:166,155:0.48:321
chr2	18770540	rs6720633	G	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr2	19548383	rs13427470	A	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-2.891;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:47,36:0.43:83
chr2	19553570	rs45535040	G	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,66:0.56:118
chr2	20130970	.	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.121;QD=2.22;ReadPosRankSum=0.275;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	20131184	rs1191779	C	A	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	20131987	rs4294960	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	20133009	rs78685213	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	20133113	rs16987240	A	C	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr2	20135283	rs6741091	T	C	15043.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:4,602:0.99:606
chr2	20153793	rs16987251	T	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr2	20160250	rs12996974	G	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	20169509	rs61079224	AT	A	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.32;ReadPosRankSum=2.636;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	20173255	rs10153717	A	C	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	20189070	rs140638337	G	A	6587.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:179,314:0.64:493
chr2	20189089	rs3731663	C	T	10085.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr2	20189602	rs146625285	C	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr2	20192696	rs7569975	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	20192931	rs35973216	G	A	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	20194036	rs3820949	G	C	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	20202929	rs28452699	C	T	4195.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:125,200:0.62:325
chr2	20205423	rs5829721	A	AAAAG	2072.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	20205680	rs28401180	C	T	25017.77	.	AC=2;AF=1.00;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	1/1:1,938:1.00:939
chr2	20205848	rs28598872	G	A	17731.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:1,654:1.00:655
chr2	20233135	rs1191824	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	20233929	rs936509	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.635;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	20237041	.	GA	G	1453.73	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,83:0.74:112
chr2	20237512	rs57679180	TA	T	48.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.11;ReadPosRankSum=-1.534;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr2	20302483	.	G	GAA	46.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-1.474;QD=3.59;ReadPosRankSum=2.627;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	20302484	.	G	GAAGAAGAAGAAGAAGAAGAAGA	257.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.823;ClippingRankSum=-0.000;DP=55;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-1.534;QD=14.32;ReadPosRankSum=2.369;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	20302490	rs7586260	G	A	3292.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.01;MQRankSum=1.593;QD=36.18;ReadPosRankSum=-0.282;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:3,88:0.97:91
chr2	20320480	rs11885236	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=2.523;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	20401858	rs11350492	TA	T	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.478;QD=3.24;ReadPosRankSum=1.708;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	20402748	rs80346602	T	C	5001.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:568,284:0.33:852
chr2	20403794	rs10205485	A	T	7310.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:141,335:0.70:476
chr2	20405004	rs3732166	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	20405050	rs6531225	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	20423154	rs4666375	A	G	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	20424364	rs114815037	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:19,81:0.81:100
chr2	20455176	.	G	GT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.567;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr2	20507724	rs75012163	C	G	5238.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:186,261:0.58:447
chr2	20508156	rs34057700	C	T	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.882;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:184,106:0.37:290
chr2	20699625	rs13010768	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	20699667	rs342089	C	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr2	20700786	rs961496	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	20700900	rs342088	A	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	20701052	rs138351601	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr2	20818454	rs3732152	T	A	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.72;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	20818454	.	TTCTG	ATCTA,ATCTG	1287	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=33;MMLQ=27;MQ=59.79;NF=43,85;NR=34,61;PP=1287,936;QD=17.4086736995;SC=GGGGCTGGGCTTCTGGTTGGC;SbPval=0.45;Source=Platypus;TC=148;TCF=86;TCR=62;TR=77,146;WE=20818466;WS=20818444;set=Platypus	GT:AF:DP	0/1:0.52:148
chr2	20818458	rs3732151	G	A	3385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-1.344;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:157,170:0.52:327
chr2	20822194	rs73235072	G	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	20822218	rs4666444	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	20823612	rs13030108	A	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	20823724	rs6531248	T	C	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	20823816	rs2305460	G	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr2	20823850	rs6733419	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	20824658	rs10199441	G	A	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr2	20824708	rs10191266	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr2	20838318	rs3796064	G	A	6072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=1.237;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:255,300:0.54:555
chr2	20841059	rs4666449	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	20845273	rs2304423	G	A	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	20867122	.	G	GGGCGGCGGC	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.585;QD=2.67;ReadPosRankSum=1.540;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	20870579	rs13013489	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	20871190	rs4666457	A	C	6922.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	20886706	rs147773589	T	C	3790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.729;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:212,196:0.48:408
chr2	20988862	rs112842804	C	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:225,186:0.45:411
chr2	20990167	rs553687	A	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	21001192	rs139472393	A	G	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:116,125:0.52:241
chr2	21225281	rs1042034	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	21229039	rs12713558	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:96,109:0.53:205
chr2	21232195	rs693	G	A	4866.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:225,240:0.52:465
chr2	21232803	rs584542	T	C	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.18;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	21232803	.	TG	CA,CG	836	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=19,45;NR=19,55;PP=479,836;QD=14.0123124964;SC=TGCTCAAGAATGTCATTTATT;SbPval=0.38;Source=Platypus;TC=100;TCF=45;TCR=55;TR=38,100;WE=21232812;WS=21232793;set=Platypus	GT:AF:DP	0/1:0.38:100
chr2	21232804	rs1041968	G	A	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-1.978;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:102,87:0.46:189
chr2	21235375	rs12720847	G	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:130,102:0.44:232
chr2	21235475	rs568413	T	C	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	21236482	rs488329	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	21238007	rs61736761	G	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:69,61:0.47:130
chr2	21246306	rs12714102	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr2	21249682	rs12714192	G	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr2	21252365	rs67556837	GAGGA	G	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.400;QD=12.99;ReadPosRankSum=-0.311;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	21255573	rs10701091	C	CCATCT	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	21256413	rs12720811	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr2	21260934	rs6752026	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr2	21266605	rs12720761	T	C	5776.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:204,276:0.57:480
chr2	21360583	rs312966	A	G	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	23746800	rs13390453	G	A	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:182,167:0.48:349
chr2	23746970	rs13430014	A	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr2	23862187	rs540290	C	G	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr2	23865260	rs642931	T	C	17775.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr2	23865908	rs527176	G	C	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	23907211	.	T	TA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.663;QD=1.58;ReadPosRankSum=0.419;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr2	23919375	rs3795942	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr2	23925980	rs12466745	T	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr2	23926659	rs3795948	T	C	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:290,256:0.47:546
chr2	24042550	rs2879639	C	T	443.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=1.439;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr2	24055058	rs10432637	G	C	19062.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr2	24103432	rs374010112	CA	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.358;QD=3.35;ReadPosRankSum=-0.713;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr2	24108652	rs7579201	T	C	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr2	24110911	rs34093830	G	GA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.009;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:33,28:0.46:61
chr2	24194314	rs1533440	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr2	24199944	.	G	C	2805.77	.	AC=1;AF=0.500;AN=2;DP=336;set=Intersection	GT:AD:AF:DP	0/1:184,152:0.45:336
chr2	24246175	rs12989842	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr2	24246679	rs925228	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr2	24255862	rs10179142	C	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	24276736	rs11125393	T	C	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.488;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:161,125:0.44:286
chr2	24291124	rs1971074	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	24369674	rs11693860	C	T	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	24384424	rs4665667	T	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	24387178	rs113322110	G	GC	3024.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	24388096	rs4665668	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	24390517	rs2288072	G	A	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:203,145:0.42:348
chr2	24395269	rs918802	T	C	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	24395294	rs918803	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	24395506	rs889830	T	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	24398281	rs2042467	T	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	24398446	rs2042468	A	T	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	24402127	rs61193015	C	CAA	1528.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=42.46;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	24432211	rs2303293	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	24432620	rs2303294	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	24432667	rs2303295	C	G	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	24440997	rs2551183	A	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	24475205	rs4450560	T	C	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	24484150	rs4665680	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	24498839	rs4411652	T	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	24521493	rs7559133	C	T	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	24521766	rs6707600	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	24535292	rs75798405	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:81,93:0.53:174
chr2	24536505	.	C	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.17;ReadPosRankSum=0.066;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	24550867	.	CAA	C,CA	2674.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=2.340;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.073;SOR=0.964;set=HC	GT:AD:AF:DP	1/2:37,52,140:0.23,0.61:229
chr2	24952740	rs11439247	C	CT	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	25039804	rs2099505	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	25046361	rs5829941	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.391;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	25061270	rs144091796	GGGGTGGGGTGGGTGGGGT	G	1590.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr2	25061755	rs114530292	T	C	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.084;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:109,128:0.54:237
chr2	25064048	rs73923440	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=1.990;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	25100648	rs11125825	C	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	25100738	rs10865315	C	A	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	25100902	rs2033656	C	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	25141434	rs61732745	G	A	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:234,222:0.49:456
chr2	25141538	rs11676272	A	G	29671.77	.	AC=2;AF=1.00;AN=2;DB;DP=1123;set=Intersection	GT:AD:AF:DP	1/1:0,1119:1.00:1119
chr2	25190127	rs6749438	G	A	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=2.149;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:83,73:0.47:156
chr2	25194586	rs7593743	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,91:0.61:150
chr2	25194741	rs7593864	G	A	7881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.982;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:365,390:0.52:755
chr2	25313988	rs11414211	T	TG	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	25314186	rs2918630	T	C	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:154,138:0.47:292
chr2	25316045	rs10495751	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr2	25360186	rs112767688	C	T	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:122,132:0.52:254
chr2	25360196	rs116074763	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:153,139:0.48:292
chr2	25362194	rs6718083	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr2	25368005	rs10188516	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	25368030	rs10180231	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	25376681	rs113389176	G	A	4958.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:253,251:0.50:504
chr2	25377176	rs2164808	T	C	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr2	25377329	rs2118404	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	25383887	rs1042571	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:72,87:0.55:159
chr2	25384456	rs10654394	C	CGCCGCTGCT	2975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.252;QD=7.79;ReadPosRankSum=-0.601;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:232,150:0.39:382
chr2	25384705	rs6713396	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	25457441	.	G	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-1.058;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	25523196	rs7596387	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr2	25551692	rs12995245	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	25602142	rs2304426	G	A	14687.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr2	25655772	rs7583475	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr2	25656880	rs1395949	C	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	25754235	rs539879	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr2	25875401	rs137982132	T	TAA	1275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=5.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-2.962;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:70,94:0.57:164
chr2	25973309	rs10178552	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	25994412	rs71399322	A	AG	1993.73	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:238,145:0.38:383
chr2	26022277	rs34816614	T	C	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.048;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:165,139:0.46:304
chr2	26068509	rs6741640	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	26082046	rs34236477	GT	G	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	26082057	rs13422450	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	26082212	rs13425195	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	26161226	rs11388254	C	CA	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-1.802;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:49,35:0.42:84
chr2	26174882	rs41285967	T	C	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	26177198	rs17047211	A	G	10775.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr2	26203678	rs1465878	T	C	13791.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr2	26204640	rs6721440	G	A	13788.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr2	26321526	rs11678157	T	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-1.039;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr2	26350136	rs2289022	G	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr2	26357748	rs2243834	G	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr2	26399214	rs4665830	G	A	19054.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,735:1.00:735
chr2	26405985	rs10779956	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	26408064	rs4665833	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	26415088	rs34898931	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.135;QD=1.04;ReadPosRankSum=0.802;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr2	26415429	rs5001914	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	26416301	rs7582341	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	26417533	rs1865324	C	A	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	26420708	rs13387855	T	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	26420809	rs2289019	G	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	26454996	rs7593175	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	26477125	rs147970487	G	GACT	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	26484080	rs368550772	AC	A,ACC	512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.490;QD=16.02;ReadPosRankSum=-0.641;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:4,18,10:0.56,0.31:32
chr2	26484125	rs79180294	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	26505745	rs7572240	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	26508496	rs116641331	G	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr2	26512957	rs1056471	G	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	26532491	rs2007556	G	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	26532735	rs3856397	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr2	26533023	rs3851967	C	T	4660.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:205,234:0.53:439
chr2	26533911	rs115902922	C	T	5095.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:331,262:0.44:593
chr2	26534801	rs7568529	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr2	26535727	rs80010629	T	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr2	26536299	rs11886746	C	G	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:262,230:0.47:492
chr2	26536694	rs2052937	C	T	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	26537499	rs10187359	A	C	12415.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr2	26540951	rs116141676	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:123,99:0.45:222
chr2	26586984	rs7583680	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.47;ReadPosRankSum=1.699;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	26606347	rs13030294	T	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	26607992	rs934280	T	C	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:102,114:0.53:216
chr2	26609530	rs186876913	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	26625042	rs13003230	C	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:101,107:0.51:208
chr2	26637122	rs186982230	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	26637172	rs10188538	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr2	26637228	rs74936036	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr2	26647071	rs77720720	C	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	26647277	rs7423300	T	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr2	26652671	rs4356622	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	26653377	rs116363700	G	A	3805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=5.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.91;ReadPosRankSum=0.374;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:86,96:0.53:182
chr2	26653387	rs138339307	A	G	4444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.75;ReadPosRankSum=-1.187;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:106,131:0.55:237
chr2	26653457	rs4450561	G	A	4587.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:273,240:0.47:513
chr2	26663187	.	T	TTG	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.902;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	26663266	rs139352961	G	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-2.872;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:139,75:0.35:214
chr2	26667128	rs78892546	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:166,117:0.41:283
chr2	26667615	rs939820	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	26667779	rs77226260	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:133,96:0.42:229
chr2	26671092	rs34461558	C	CA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.359;QD=2.18;ReadPosRankSum=-1.024;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:78,37:0.32:115
chr2	26671163	rs115148454	G	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:177,168:0.49:345
chr2	26676322	rs1402962	A	G	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	26677810	rs2280516	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr2	26678040	rs3172008	G	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr2	26682816	rs150188422	G	GTGTA	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr2	26682829	rs76552018	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	26687761	rs17005371	G	A	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	26689912	rs3215308	TG	T	6487.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	26689914	rs114349425	G	A	6497.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	26698277	rs145239283	T	A	6036.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:294,304:0.51:598
chr2	26699126	rs4335905	C	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	26700819	rs55806442	TGG	T	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	26702082	rs61323419	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.441;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	26705527	rs74802025	G	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr2	26707593	rs55763868	T	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr2	26712561	rs41288779	C	T	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:242,203:0.46:445
chr2	26712710	rs78947900	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr2	26724725	rs6547079	T	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	26739276	rs76712142	T	C	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:123,130:0.51:253
chr2	26750557	rs10865425	T	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	26750645	rs1879760	G	A	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:196,144:0.42:340
chr2	26795217	rs59491712	GT	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-0.384;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	26799091	rs2272465	C	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr2	26800422	rs1053807	G	A	10297.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr2	26801586	rs1148956	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr2	26804008	rs744538	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	26804122	rs744539	T	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr2	26804143	rs744540	T	C	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:119,93:0.44:212
chr2	26804177	rs77434337	G	C	3888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.633;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:144,186:0.56:330
chr2	26804218	rs935171	G	A	14062.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr2	26804247	rs935172	T	C	4860.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:330,263:0.44:593
chr2	26805619	.	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr2	26806712	rs149619875	C	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr2	26818006	rs1148962	T	C	5176.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:282,289:0.51:571
chr2	26916140	rs111740015	C	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr2	26950905	rs34292597	G	T	7765.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:440,396:0.47:836
chr2	26951449	rs1663002	G	A	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	27151076	rs75002276	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr2	27157400	rs920436	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	27163044	rs3739085	T	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr2	27164806	rs3820823	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr2	27169637	rs3835821	TC	T	1610.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	27169842	rs11126784	C	A	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:217,213:0.50:430
chr2	27246285	rs10865456	C	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:169,156:0.48:325
chr2	27248700	rs72852965	A	G	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:115,109:0.49:224
chr2	27249245	rs3754733	A	G	10489.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr2	27259794	rs13021112	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	27260469	rs1124649	G	A	5007.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:241,248:0.51:489
chr2	27261329	rs11690454	A	G	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr2	27262763	rs146244277	GGGA	G	13047.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	27263122	rs1866654	T	C	5461.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:215,264:0.55:479
chr2	27276202	rs3806520	G	A	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr2	27279416	rs2384570	A	G	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	27280092	rs6711384	T	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr2	27280127	rs6721395	G	A	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:100,66:0.40:166
chr2	27290525	rs11681145	A	G	6162.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:272,302:0.53:574
chr2	27291661	rs7575465	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	27292651	rs10865461	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr2	27293150	rs1053609	G	T	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:192,200:0.51:392
chr2	27302165	rs2289360	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	27303755	rs2736976	A	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	27307769	rs2304682	G	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr2	27319826	rs9677784	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	27323468	rs4665371	A	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	27324036	rs1057394	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	27324340	.	G	A	1160	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=2;MMLQ=27;NF=19;NR=24;SC=CTCTGGGCCCGGGGGCATCTC;Source=Platypus;TCF=54;TR=43;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:57,43:0.43:100
chr2	27324354	.	C	T	1160	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=56.9;NF=10;NR=13;PP=1160;QD=51.9465744586;SC=GCATCTCCTTCAGCCTCTGCC;SbPval=0.27;Source=Platypus;TC=88;TCF=48;TCR=40;TR=23;WE=27324362;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:65,23:0.26:88
chr2	27324724	rs2384571	G	C	13067.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr2	27324751	rs2384572	G	T	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:293,262:0.47:555
chr2	27351279	rs1866561	G	A	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	27351948	rs6715286	T	G	12479.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr2	27354173	rs11126874	C	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	27355454	rs4665948	A	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	27359887	rs11121	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr2	27427509	rs115195329	C	A	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:167,144:0.46:311
chr2	27428147	rs1298361	A	G	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	27428295	rs1275524	A	G	35430.77	.	AC=2;AF=1.00;AN=2;DB;DP=1360;set=Intersection	GT:AD:AF:DP	1/1:0,1360:1.00:1360
chr2	27435165	rs11556163	G	A	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	27439354	rs7601452	G	A	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:3,176:0.98:179
chr2	27440785	rs1275536	C	T	25785.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	1/1:0,985:1.00:985
chr2	27446699	rs13395251	G	A	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	27447161	rs13424394	C	A	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	27449293	rs7593448	C	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	27459364	rs10193746	T	C	9474.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr2	27460831	rs72817510	G	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:122,127:0.51:249
chr2	27460968	rs1141313	A	G	25818.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	1/1:0,1021:1.00:1021
chr2	27462405	rs2014252	T	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	27463323	rs7589553	T	C	16106.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr2	27464332	rs72817512	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	27466207	rs115730020	G	A	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.665;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:121,137:0.53:258
chr2	27466258	rs5830040	CT	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.790;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:44,26:0.37:70
chr2	27478231	rs13390228	A	G	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	27479094	.	ATG	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.725;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr2	27479777	rs10210843	C	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	27479936	rs10176050	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	27481652	rs1992290	A	C	11287.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr2	27485814	rs72858465	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	27499791	.	CTT	C,CTTT	308.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.115;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.746;SOR=0.250;set=HC	GT:AD:AF:DP	1/2:12,16,21:0.33,0.43:49
chr2	27522543	rs112702645	CCTAT	C,CCTATCTAT	5934.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=299;set=Intersection	GT:AF:DP	1/2:0.53,0.46:150
chr2	27527969	rs114956796	C	G	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:158,154:0.49:312
chr2	27528692	rs4665963	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	27535311	rs5830041	T	TG	24542.73	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr2	27539180	rs72817545	C	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	27549833	rs35568684	CA	C	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.790;QD=8.77;ReadPosRankSum=0.318;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	27550967	rs1049817	A	G	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr2	27556485	rs78067336	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr2	27556721	rs3739095	G	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	27558252	rs11684134	A	G	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr2	27587922	rs35891906	CT	C	232.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;QD=16.62;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	27589810	rs2280737	T	C	14505.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr2	27592423	rs7602534	C	T	9181.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	27595756	rs1528533	G	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	27597805	rs3215365	CTT	C	1265.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	27598097	rs4665972	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	27599132	rs12475426	G	A	14461.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:2,553:1.00:555
chr2	27600239	rs13472	G	A	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr2	27606098	rs2384629	A	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	27656822	rs3214499	G	GA	5278.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	27659491	rs780102	T	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	27659832	.	C	CT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.172;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:245,53:0.18:298
chr2	27663215	rs1260341	T	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	27663326	rs56004639	G	A	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:140,143:0.51:283
chr2	27663416	rs1260342	G	T	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr2	27665361	rs780112	C	G	12319.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr2	27667297	rs4803	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	27667520	rs10635082	T	TTTTG	1262.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	27668999	rs139979160	TAGG	T	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr2	27669341	rs11333597	AT	A	3771.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	27669365	rs11430923	G	GT,GTT	883.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=0.131;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:3,31,13:0.66,0.28:47
chr2	27670307	rs11126999	G	A	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr2	27676287	rs56076827	A	T	10602.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr2	27677691	rs780104	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	27681598	rs780106	A	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	27684734	rs780107	A	G	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	27685388	rs780110	G	A	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	27688601	rs1647276	C	T	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	27706640	rs2272417	T	C	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	27715207	rs8395	T	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	27715416	rs2303369	C	T	7593.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	27716494	rs704795	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	27717561	rs114873983	G	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr2	27721971	rs813592	T	C	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	27722416	rs1260320	G	A	5238.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	27728777	rs2293572	C	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	27729480	rs2293571	G	A	8683.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr2	27730940	rs1260326	T	C	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr2	27746410	rs704790	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	27760286	rs57762392	G	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:103,92:0.47:195
chr2	27788282	rs76969484	G	C	3926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=1.361;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:209,203:0.49:412
chr2	27801403	rs1919125	C	G	9216.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:270,248:0.48:518
chr2	27801418	rs1919126	C	A	9058.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:279,245:0.47:524
chr2	27804432	rs28381983	T	C	7210.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:284,338:0.54:622
chr2	27821150	rs200849197	ACGGGC	A	2063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.579;QD=16.64;ReadPosRankSum=2.493;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:69,55:0.44:124
chr2	27821151	.	CGGGCCACTT	C	2938	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=27;MQ=59.77;NF=2;NR=25;PP=2938;QD=20;SC=ATTCTGAAGACGGGCCACTTC;SbPval=0.41;Source=Platypus;TC=58;TCF=3;TCR=55;TR=27;WE=27821169;WS=27821141;set=Platypus	GT:AD:AF:DP	1/0:31,27:0.47:58
chr2	27821157	rs201292659	ACTTC	A	2081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.484;QD=17.95;ReadPosRankSum=2.566;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:61,55:0.47:116
chr2	27821161	.	C	A	2161	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=59.74;NF=7;NR=25;PP=2161;QD=68.6178503921;SC=CGGGCCACTTCCTAAAGTTAT;SbPval=0.79;Source=Platypus;TC=71;TCF=20;TCR=51;TR=32;WE=27821169;WS=27821141;set=Platypus	GT:AD:AF:DP	1/0:39,32:0.45:71
chr2	27822454	rs11539164	A	C	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.333;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:77,72:0.48:149
chr2	27830990	rs6547734	G	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr2	27838058	rs11127071	C	A	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.943;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:113,83:0.42:196
chr2	27839010	rs77186477	G	C	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr2	27839107	rs6737921	T	C	3914.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:129,196:0.60:325
chr2	27851120	rs12615690	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	27852117	rs60089768	A	AGGTCTT	3168.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:65,81:0.55:146
chr2	27852118	rs58737572	A	C	3177.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,75:0.54:140
chr2	27852637	rs6547738	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	27857992	rs4666009	T	A	4352.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:223,219:0.50:442
chr2	27861707	rs11692692	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	27865325	rs6718955	A	G	9997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=1.742;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:555,518:0.48:1073
chr2	27876641	rs74965659	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr2	27883958	rs6756254	C	T	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:120,140:0.54:260
chr2	27884227	.	TTGA	T	1882.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr2	27884878	rs1569152	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	27886820	rs58106741	G	T	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:255,206:0.45:461
chr2	27887034	rs9678851	C	A	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:210,210:0.50:420
chr2	27892324	rs77188057	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr2	27907817	rs75617903	G	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:100,77:0.44:177
chr2	27907828	rs76388486	C	T	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:130,96:0.42:226
chr2	27917311	rs59447034	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.578;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	27995781	rs3736594	A	C	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	28069713	rs11901133	T	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	28084530	rs141374929	T	TGG	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.886;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr2	28268467	rs6738887	C	T	172.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr2	28464369	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr2	28464435	rs6737817	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	28615812	.	G	GGA	1332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.353;QD=8.28;ReadPosRankSum=-0.313;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:104,57:0.35:161
chr2	28626860	rs11900743	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,71:0.66:107
chr2	28718897	rs4665423	A	G	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	28748857	rs4666085	T	C	12616.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr2	28748896	rs145632087	A	ACAC	3963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.146;QD=10.49;ReadPosRankSum=0.749;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:263,115:0.30:378
chr2	28752498	rs6728486	T	C	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	28752555	rs4473343	T	C	15162.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,582:1.00:582
chr2	28752623	rs75175520	G	T	3323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.154;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:444,209:0.32:653
chr2	28752727	rs6710800	C	G	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	28752741	rs6725577	A	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	28755184	rs10656827	C	CATGG	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr2	28761257	rs7589169	A	G	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr2	28761282	rs7589254	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr2	28761876	rs146486654	C	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:106,42:0.28:148
chr2	28762169	rs115468198	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr2	28771452	rs56019402	CTA	C	953.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr2	28771624	rs11680168	T	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:215,85:0.28:300
chr2	28772887	rs77183296	A	G	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.089;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:319,110:0.26:429
chr2	28786076	rs115318701	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.641;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	28786084	rs114314054	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.783;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr2	28788428	rs34237604	AG	A	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.605;QD=12.52;ReadPosRankSum=0.719;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	28789771	rs371131114	C	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:274,124:0.31:398
chr2	28800894	rs877832	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,37:0.33:113
chr2	28802355	rs12466173	G	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,59:0.39:151
chr2	28804835	rs5830085	GA	G	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=12.817;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.938;SOR=2.086;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr2	28805410	rs4666102	C	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:104,56:0.35:160
chr2	28812285	rs12468715	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr2	28812982	rs4666105	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:223,125:0.36:348
chr2	28814033	rs11681826	A	G	7717.77	.	AC=1;AF=0.500;AN=2;DB;DP=1564;set=Intersection	GT:AD:AF:DP	0/1:1079,483:0.31:1562
chr2	28814548	rs12464271	A	T	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:454,193:0.30:647
chr2	28814683	rs11127176	T	C	1425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.428;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:232,94:0.29:326
chr2	28816425	rs10176136	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	28816814	rs11462230	C	CTT,CTTT	4066.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.108;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=0.270;SOR=1.003;set=HC	GT:AD:AF:DP	1/2:18,64,131:0.30,0.62:213
chr2	28816948	rs4665429	C	T	22108.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr2	28841021	rs1881256	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	28841049	rs1881255	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr2	28841273	.	A	G	7752.77	.	AC=1;AF=0.500;AN=2;DP=596;set=Intersection	GT:AD:AF:DP	0/1:220,370:0.63:590
chr2	28843428	rs111835372	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:173,117:0.40:290
chr2	28847806	rs11127181	C	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:295,113:0.28:408
chr2	28849473	rs899149	T	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.666;SOR=0.225;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr2	28855088	rs11300009	CT	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.139;QD=2.36;ReadPosRankSum=0.022;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr2	28855840	rs3752902	C	T	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:454,202:0.31:656
chr2	28855918	rs34314459	A	AG	12001.73	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr2	28863809	rs150927025	G	A	14827.77	.	AC=1;AF=0.500;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	0/1:355,704:0.66:1059
chr2	28865760	rs2272387	T	C	11166.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:305,518:0.63:823
chr2	28865968	rs57817040	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=0.000;SOR=1.824;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr2	28865977	rs1052358	C	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=0.219;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	28975107	rs2276547	G	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr2	29001691	rs1128416	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.755;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr2	29039131	rs78553576	T	A	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:34,83:0.71:117
chr2	29045323	rs4436918	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.364;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:93,28:0.23:121
chr2	29052256	rs12998251	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	29063415	rs201628767	C	CATA	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	29075480	rs151071198	T	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:32,83:0.72:115
chr2	29092679	rs4233729	T	C	9132.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:234,415:0.64:649
chr2	29092850	rs4666122	G	T	12028.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:272,558:0.67:830
chr2	29129300	rs36066576	AT	A	4192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=12.392;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.434;QD=8.92;ReadPosRankSum=0.837;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:133,337:0.72:470
chr2	29135468	rs6715296	C	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.275;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:391,134:0.26:525
chr2	29140665	rs138576317	CAT	C	3631.73	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:232,104:0.31:336
chr2	29145663	rs61402912	G	GTTT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.322;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	29145725	rs9653591	G	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.545;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:85,36:0.30:121
chr2	29150157	rs56127663	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	29152456	rs1140697	A	G	2120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.795;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:359,140:0.28:499
chr2	29159668	rs73922903	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	29160707	rs10187526	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr2	29161010	rs4233731	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	29165146	rs73922906	C	G	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:87,147:0.63:234
chr2	29169612	rs3087649	T	C	9781.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr2	29222388	rs57018089	G	C	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:91,185:0.67:276
chr2	29225502	rs72786178	T	G	12487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-0.077;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:174,309:0.64:483
chr2	29225502	.	TCT	GCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=20;MQ=59.95;NF=92;NR=71;PP=2944;QD=20;SC=GGCCGATGCCTCTCATCCAGA;SbPval=0.6;Source=Platypus;TC=269;TCF=148;TCR=121;TR=163;WE=29225512;WS=29225492;set=Platypus	GT:AD:AF:DP	1/0:106,163:0.61:269
chr2	29225504	rs72786179	T	C	12487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=-0.122;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:179,314:0.64:493
chr2	29226417	rs76285160	C	T	10567.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:298,507:0.63:805
chr2	29226512	rs12623297	A	G	6289.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:148,293:0.66:441
chr2	29240783	rs1109758	A	G	6190.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:122,288:0.70:410
chr2	29244932	rs78632546	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr2	29245272	rs113810233	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	29246044	rs6721861	T	C	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:82,207:0.72:289
chr2	29246119	rs6734731	G	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr2	29246922	rs61630439	G	A	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr2	29247229	rs113163075	G	C	11666.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:263,554:0.68:817
chr2	29249903	rs11884174	G	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr2	29287708	rs10182566	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	29287926	rs139768554	C	CGCT	2361.73	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:270,139:0.34:409
chr2	29295016	rs10200693	A	G	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:208,144:0.41:352
chr2	29295389	rs10166913	G	A	5905.77	.	AC=1;AF=0.500;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	0/1:687,360:0.34:1047
chr2	29295676	rs13385188	G	A	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:360,177:0.33:537
chr2	29296449	rs114057537	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:249,105:0.30:354
chr2	29297091	rs10084168	T	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:235,113:0.32:348
chr2	29352870	rs116693628	G	A	9173.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:234,436:0.65:670
chr2	29355303	rs4666167	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	29356469	rs138251738	T	TTGGAA	2482.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr2	29356669	rs3100232	A	G	8256.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	29356728	rs3768674	T	C	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr2	29366875	rs3217572	C	CACAG	2201.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr2	29366954	rs113385772	T	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.31;ReadPosRankSum=0.667;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	29383374	rs2305450	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	29416037	rs80088378	C	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	29416366	rs1881421	G	C	11488.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	29416572	rs1670283	T	C	14653.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr2	29416794	rs17007646	G	A	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	29432625	rs3738868	C	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	29432776	rs3738867	T	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	29444095	rs1569156	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr2	29445113	rs72852030	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr2	29451675	rs141563891	A	AGGGCG	2840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=3.156;QD=15.78;ReadPosRankSum=-0.128;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:111,69:0.38:180
chr2	29451986	rs62130588	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr2	29452015	rs73920741	C	T	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr2	29455267	rs2256740	A	G	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:260,202:0.44:462
chr2	29462520	rs77855517	G	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,72:0.48:150
chr2	29498210	rs4589708	A	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	29519731	.	T	G	2786.77	.	AC=1;AF=0.500;AN=2;DP=252;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr2	29525341	rs11127213	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	29917940	rs2256376	C	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	29940529	rs2246745	A	T	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:250,188:0.43:438
chr2	30143499	rs4358080	G	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	30381505	rs1137288	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	30480186	rs78577380	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr2	30682360	rs829574	G	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	30682630	rs829573	T	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr2	30748733	rs766880	G	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	30775299	rs12053428	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	30791152	rs6749074	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	30828792	rs2248777	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr2	30862842	rs150564049	AG	A	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr2	30862980	rs12466818	C	T	4634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.207;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:278,241:0.46:519
chr2	30863092	rs12467646	C	T	3006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.426;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:196,159:0.45:355
chr2	30863108	rs12471868	A	G	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:165,143:0.46:308
chr2	30863543	.	TTC	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=1.645;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	30955528	rs2276567	C	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	30968173	.	T	G	1556.77	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr2	30968228	rs7567391	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,57:0.40:143
chr2	30968760	.	ATTTTTT	ATTTTTTT,A	878.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=66;set=Intersection	GT:AF:DP	1/1:0.88:8
chr2	30973825	rs1879283	C	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	30976112	rs10184109	C	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr2	30977073	rs485100	G	A	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:143,112:0.44:255
chr2	30980872	rs113638338	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	30980940	rs508405	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	30986989	rs579016	G	T	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr2	30993454	rs10182688	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=1.818;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	31000370	rs6548033	G	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	31009977	rs1915125	G	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	31010212	rs13021213	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:90,62:0.41:152
chr2	31134072	rs75217918	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	31147791	rs61084276	A	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	31178958	rs141947378	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	31188957	rs889896	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	31369720	rs78537218	G	A	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:123,147:0.54:270
chr2	31369803	rs73921509	A	G	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:105,100:0.49:205
chr2	31401290	rs4952052	A	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr2	31410708	rs1822496	C	T	10916.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr2	31414807	rs1562022	C	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr2	31467351	rs2295473	T	A	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	31483890	rs13028669	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr2	31484334	rs654650	G	A	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	31488965	rs619002	C	T	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	31488992	rs190841689	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:105,62:0.37:167
chr2	31489627	rs67643147	TAC	T	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.592;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	31565316	rs35235275	C	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	31567632	rs207454	T	G	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	31567743	rs566224	T	C	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	31569471	rs7599175	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	31570376	rs1366813	T	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	31570626	rs4952083	C	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	31570631	rs4952084	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.07;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	31571241	rs13415401	G	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr2	31571786	rs1884725	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	31572482	rs11408029	T	TG	2745.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	31587235	rs1018505	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.747;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:59,57:0.49:116
chr2	31596955	rs4952086	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=1.385;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	31596963	rs4952087	T	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.60;ReadPosRankSum=1.489;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	31600146	rs10187719	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	31604446	rs45552841	A	G	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	31609448	rs477626	A	C	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	31611029	rs2073316	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	31611367	rs206847	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	31805619	rs619857	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	31805675	rs522638	A	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr2	31805706	rs523349	G	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr2	31805880	rs142200057	A	AG	11981.73	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	31806031	rs632148	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	32117217	.	G	GA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.817;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr2	32312700	rs7561519	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	32312763	rs72286744	C	CTT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=2.823;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	32314473	rs469305	A	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	32314520	rs143216236	TG	T	245.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	32324072	rs7566162	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	32361482	rs11392886	T	TC	221.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	32362079	rs10627985	G	GTATA	2497.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	32366993	.	ATGTGTCTTTACCAAATGAGGAGGTATGTATC	A	419	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=19;MQ=60.0;NF=0;NR=2;PP=419;QD=226.0;SC=AAACGGGTATATGTGTCTTTA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=32367031;WS=32366983;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr2	32369901	rs2365556	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	32372414	rs71835086	G	GTTT	35.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.319;QD=8.95;ReadPosRankSum=-0.319;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	32412065	.	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.935;QD=1.62;ReadPosRankSum=1.062;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr2	32429880	.	ATT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.378;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr2	32449871	rs376045897	ATTTT	A,ATTT	1887.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=122;set=Intersection	GT:AF:DP	0/1:0.47:107
chr2	32449879	rs199998217	T	TAAA	1842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.38;ReadPosRankSum=1.617;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:56,50:0.47:106
chr2	32460348	rs212714	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.366;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	32461493	rs55638726	T	TC	82.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	32466029	rs212721	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr2	32475109	rs455060	G	A	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:304,240:0.44:544
chr2	32664822	rs144064176	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr2	32667058	rs55734616	C	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	32667061	rs60955793	T	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	32667182	rs60197615	G	C	10896.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr2	32688601	rs762019	A	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	32690253	.	A	AT	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.993;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:129,53:0.29:182
chr2	32706579	rs9646977	T	A	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	32710707	rs77296550	T	C	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:160,137:0.46:297
chr2	32712875	rs2366891	A	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	32713706	rs2366894	A	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-2.558;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	32724566	.	ATC	A	156.73	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:127,18:0.12:145
chr2	32724590	rs145668508	GTC	G	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.287;QD=2.32;ReadPosRankSum=0.758;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:153,30:0.16:183
chr2	32749880	rs2710609	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	32749890	rs2710610	C	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	32749893	rs2710611	A	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	32749903	rs2710612	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	32757201	.	C	CGTGTGTGT,CT	229	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.4998;HP=1;HapScore=3;MGOF=64;MMLQ=19;MQ=54.56;NF=2,5;NR=3,3;PP=229,31;QD=46.4;SC=GATTTCATGTCGTGTGTGTGT;SbPval=0.44;Source=Platypus;TC=7;TCF=2;TCR=5;TR=5,8;WE=32757209;WS=32757191;set=Platypus	GT:AF:DP	0/1:0.71:7
chr2	32822957	rs2710625	G	A	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:143,161:0.53:304
chr2	32855615	rs2710623	A	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	32860415	rs11124286	C	T	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	32959024	rs1551177	T	C	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	32961745	rs10200333	T	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	32983299	rs71407470	TA	T	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	32991619	rs185399489	T	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr2	33004907	rs34397390	G	GTCC	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	33005238	rs6729463	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	33036324	rs3731578	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	33046014	rs139045069	GAAGCAGATTCTGGAA	G	4057.73	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:166,111:0.40:277
chr2	33172362	rs62135679	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	33172949	.	C	CG	460.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	33392911	rs6728094	G	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:119,112:0.48:231
chr2	33407186	rs6759943	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr2	33407285	rs2367619	G	A	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:188,141:0.43:329
chr2	33412077	rs1065324	G	A	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr2	33413640	rs6712473	G	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr2	33413949	rs4542826	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr2	33414009	rs3922572	T	A	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	33442549	rs2290449	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.622;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	33447202	rs2290448	C	T	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:261,233:0.47:494
chr2	33501025	rs17012731	G	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr2	33518201	rs7560761	C	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:122,127:0.51:249
chr2	33525382	rs935996	A	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	33534719	rs17012818	A	G	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=1.034;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:58,41:0.41:99
chr2	33534723	rs114010111	G	A	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=1.745;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:54,38:0.41:92
chr2	33568113	rs10185623	A	G	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr2	33568137	rs5024713	G	A	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr2	33568191	rs5024712	T	C	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	33585796	rs4422143	T	C	13969.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr2	33586464	rs11442294	C	CT	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.960;QD=11.29;ReadPosRankSum=2.280;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr2	33586634	rs75075558	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=1.089;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr2	33614506	rs3731573	C	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	33622448	rs2367734	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	33623387	rs624060	AT	GC	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	33623734	rs622716	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	33643740	rs6724875	T	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.257;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr2	33643745	rs76703549	T	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.685;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	33744958	rs7597095	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	33745208	rs2305576	T	C	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.849;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:138,132:0.49:270
chr2	33752129	rs11292992	GC	G	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	33764286	rs7592762	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr2	33784161	rs2278955	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr2	33784500	rs2278956	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	33784801	rs12478742	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	33787976	rs10572554	CCTAA	C	2357.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	33809826	rs11124323	T	G	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:148,196:0.57:344
chr2	33809984	rs11893662	A	G	12919.77	.	AC=1;AF=0.500;AN=2;DB;DP=1398;set=Intersection	GT:AD:AF:DP	0/1:739,651:0.47:1390
chr2	33811936	rs3213961	A	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.189;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	33817017	rs11885608	G	A	104.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	33817369	rs13028004	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	33952022	rs4670913	C	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	33952055	rs2290101	C	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr2	33952413	rs4477896	T	C	5489.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:232,265:0.53:497
chr2	33952456	rs2367810	C	G	14548.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:2,551:1.00:553
chr2	33952569	rs76240611	T	C	5916.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:325,305:0.48:630
chr2	33952621	rs11684598	G	A	9886.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:479,486:0.50:965
chr2	35696612	rs4670472	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	36583759	rs140753944	T	C	6839.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:410,356:0.46:766
chr2	36605304	rs4670546	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	36605585	rs4670548	A	G	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	36605676	rs60204094	A	AT	74.82	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	36668395	rs2276673	T	A	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:93,103:0.53:196
chr2	36669645	rs17018798	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.452;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	36669670	rs3821157	C	A	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.337;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr2	36704144	rs848547	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:108,134:0.55:242
chr2	36706511	rs711250	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	36739553	rs848526	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	36740643	rs2293254	C	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	36756196	rs17019002	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:124,101:0.45:225
chr2	36756288	rs711247	T	C	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr2	36759252	rs67420681	A	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.030;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr2	36775315	rs2270333	C	G	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	36775410	.	CTTT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.229;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	36779144	rs10180760	T	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	36781401	rs1533946	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	36782886	rs848642	G	A	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:184,150:0.45:334
chr2	36805676	rs2075226	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,78:0.45:173
chr2	36806021	rs2072534	G	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:154,110:0.42:264
chr2	36806051	rs2072533	A	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,55:0.41:134
chr2	36808350	rs848638	C	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr2	36808732	rs848637	T	G	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	36824956	rs5830430	G	GC	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	36825137	rs1544655	G	A	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:147,145:0.50:292
chr2	36825170	rs2287104	T	C	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:136,125:0.48:261
chr2	36825330	rs11441122	C	CG	3141.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.53;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	36943338	rs4670597	C	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr2	36943419	rs4670598	T	C	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:133,148:0.53:281
chr2	36994439	rs11124542	A	C	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:79,87:0.52:166
chr2	37000788	rs146124811	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr2	37001570	rs974964	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr2	37028486	rs2072527	T	C	7899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.810;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:378,399:0.51:777
chr2	37035934	rs2072526	A	G	6566.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:412,331:0.45:743
chr2	37035945	rs2072525	C	A	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:395,309:0.44:704
chr2	37041439	rs11901202	C	T	5273.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:317,271:0.46:588
chr2	37077015	rs723674	C	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	37078095	rs10668550	AT	ATTT,A	231.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	0/1:0.57:21
chr2	37094945	rs2540923	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr2	37095139	rs6752845	G	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	37096970	rs2160379	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	37129618	rs148671880	A	ATAAT	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=0.447;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	37152372	rs7583071	A	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.439;QD=7.12;ReadPosRankSum=-0.625;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	37152389	.	C	CA	39	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=10;HapScore=2;MGOF=53;MMLQ=27;MQ=57.87;NF=0;NR=4;PP=39;QD=12.75;SC=CAGTTTAGACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4;WE=37152397;WS=37152379;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr2	37152425	rs17020069	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.941;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	37230734	rs17497654	C	T	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:166,142:0.46:308
chr2	37230888	rs2706811	A	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:45,63:0.58:108
chr2	37230959	rs2691108	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	37232909	rs6708710	T	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,48:0.40:121
chr2	37234519	rs2013223	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	37255015	rs2540998	G	A	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	37282225	rs34570426	CT	C	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-2.440;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr2	37299145	rs12621276	G	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	37319223	rs74474978	T	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,81:0.46:176
chr2	37362775	rs200179336	C	CT	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.489;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	37410537	rs6544061	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.199;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr2	37447473	rs57004489	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.092;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	37454998	rs1803251	A	G	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:109,111:0.50:220
chr2	37456032	rs2098386	C	T	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr2	37459183	rs2430496	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr2	37459308	rs2714473	C	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr2	37483772	rs2465485	T	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=0.163;QD=8.88;ReadPosRankSum=-1.100;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	37487317	rs2465486	A	G	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.897;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr2	37579937	rs2230299	C	T	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:275,178:0.39:453
chr2	37586680	rs45604037	C	T	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.924;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:49,51:0.51:100
chr2	37586681	rs2302651	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.92;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	37587065	rs45479300	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr2	37594594	rs41280633	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	37595604	rs3770747	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr2	37595696	rs1468816	A	C	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:188,165:0.47:353
chr2	38177525	rs11687301	A	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:71,84:0.54:155
chr2	38178406	rs4670799	A	G	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,100:0.46:216
chr2	38179134	rs4670800	G	A	18408.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr2	38179414	rs72332368	CTG	C	2601.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr2	38208233	rs1446297	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	38208606	rs61676428	A	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	38216766	.	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.155;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:130,30:0.19:160
chr2	38218470	rs11356296	TA	T	1272.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	38239827	rs112848798	A	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=2.046;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	38239836	rs75098951	G	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=1.440;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	38244437	rs17021849	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr2	38244531	rs79171422	C	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr2	38244818	rs11901988	A	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=0.426;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:40,29:0.42:69
chr2	38244824	rs11891536	G	A	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.373;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	38244826	rs77762745	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.120;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr2	38294003	rs9341270	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	38301803	rs9341249	C	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:229,185:0.45:414
chr2	38302177	rs1056827	C	A	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:133,160:0.55:293
chr2	38302390	rs10012	G	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr2	38302544	rs2617266	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,48:0.44:109
chr2	38523097	rs71649456	GA	G	1873.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:112,117:0.51:229
chr2	38523682	rs138892566	A	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:99,117:0.54:216
chr2	38526306	rs56836640	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	38526324	rs3816370	A	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	38537397	rs112531332	A	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr2	38537626	rs2305245	A	C	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr2	38541830	rs77610409	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr2	38542573	rs12712583	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	38545591	rs111634519	A	G	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.721;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	38546270	rs111877064	C	CA	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr2	38581232	rs188108638	G	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr2	38604351	rs3731847	A	G	9138.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr2	38604505	.	TCTCCGCCTGTATCTCCTCGCC	T	999.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=8.203;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.529;QD=17.54;ReadPosRankSum=-0.127;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr2	38813167	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.931;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	38830131	rs115855885	G	A	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	38916970	rs6741892	A	T	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:156,162:0.51:318
chr2	38917163	rs28473018	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr2	38956947	rs2272445	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	38968404	.	C	G	2580.77	.	AC=1;AF=0.500;AN=2;DP=252;set=Intersection	GT:AD:AF:DP	0/1:118,128:0.52:246
chr2	38973090	rs200834224	CTAAG	C	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	38977371	rs3112183	C	T	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	38977402	rs3134630	T	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	39006603	rs3112201	T	G	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	39025043	rs34207268	G	GA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.465;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	39025555	rs1530853	G	A	8883.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	39025632	rs1530852	A	G	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	39030074	rs13029406	C	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	39042639	rs3112138	G	A	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	39043360	rs368002198	AT	A	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.776;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr2	39045885	rs10176932	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	39050019	rs3112146	G	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr2	39050061	rs34582261	AT	A	3504.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	39050141	rs3770681	A	C	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	39065729	rs17494315	C	A	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr2	39075356	rs11124651	A	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	39082344	rs7598922	T	C	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr2	39083645	rs372510406	CT	C	124.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.087;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	39090696	rs3099999	T	C	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	39117117	rs7565111	G	A	6884.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	39180261	rs80092341	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	39181774	.	CTT	C	158.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=1.327;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	39185048	rs422854	C	T	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	39185334	.	C	A	2379.77	.	AC=1;AF=0.500;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:137,120:0.47:257
chr2	39187190	rs6755527	T	C	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	39187519	rs958412	A	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	39198966	rs2305516	A	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	39201073	rs141703594	CTA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.715;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	39214821	rs2290445	A	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	39224351	rs1454223	G	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	39224615	rs5830551	G	GT	539.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	39233500	rs7577088	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	39233692	rs61601281	G	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr2	39239527	.	CTTTA	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.55;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	39251375	rs10634554	T	TCAC	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	39262068	rs10153761	C	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	39278479	rs145014833	TAAAC	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.84;ReadPosRankSum=-0.438;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	39281730	rs997344	G	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	39285762	rs41280639	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr2	39294787	rs7609455	T	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:96,85:0.47:181
chr2	39294988	rs55649188	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	39406572	rs7566123	C	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr2	39431648	rs149894101	TA	T	2741.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=45.70;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	39431654	rs114874779	A	T	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=43.45;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	39479122	rs3770678	G	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	39485612	rs72923494	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	39494469	rs10865149	C	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	39509551	rs115220249	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr2	39526842	rs2111382	A	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	39542658	rs5830562	AT	A	225.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;QD=17.36;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	39553271	rs3815594	A	G	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	39560610	rs146692685	AAC	A	2415.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr2	39564620	rs1125839	C	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	39944055	rs2540229	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	39982886	rs115172226	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	39982898	rs10688564	G	GAGTAT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	39993167	rs4670959	T	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	40006430	rs12620957	A	C	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	40006442	rs35761077	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	40006488	rs145441522	A	AGGGAGAGGGAGAGGGAGAGG	399.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	40392313	rs434725	G	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	40403104	rs106706	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr2	40404839	rs433572	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr2	40564500	rs13406526	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	40564557	rs13406541	G	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	40655563	rs3838567	CCACACA	CCA,C	2075.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/1:0.95:56
chr2	42181051	.	GCA	GCACA,G	343.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=37;set=Intersection	GT:AF:DP	0/1:0.44:36
chr2	42275726	rs11891679	C	G	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr2	42275819	rs11897440	T	C	4663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.277;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=-0.579;SOR=0.435;set=HC	GT:AD:AF:DP	1/1:1,184:0.99:185
chr2	42280300	rs34482969	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	42280358	rs35771566	C	T	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:137,181:0.57:318
chr2	42282632	rs13401037	A	T	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr2	42284884	rs1044305	T	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,58:0.50:117
chr2	42396722	rs7233	A	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	42510018	rs6736913	A	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	42515388	rs10202624	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr2	42560975	rs7572231	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr2	42719847	rs113015907	T	TG	8184.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr2	42719860	rs112592817	G	GC	13187.73	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	42795954	rs78106475	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	42836516	rs6720277	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	42922888	rs66547039	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.221;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	42925079	rs148782944	TTTC	T	60.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	42931217	rs2304658	A	C	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	42935961	rs4953577	C	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	42935979	rs4953578	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	42989994	rs2278585	G	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr2	42990010	rs12617777	C	A	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:101,80:0.44:181
chr2	42990101	rs2278586	G	C	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:347,248:0.42:595
chr2	42990336	rs1992286	T	G	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	42990522	rs12712859	C	T	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:290,196:0.40:486
chr2	42994853	rs61747698	G	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr2	42996709	rs35746707	ATGTGTGTGTG	A,ATG	1912.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/2:0.43,0.57:53
chr2	42996759	rs34567167	AAGAG	A	3797.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:3,89:0.97:92
chr2	42997614	rs2241850	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:123,125:0.50:248
chr2	43009872	rs143788834	C	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	43010130	rs34837864	AC	A	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr2	43011169	rs4953660	G	T	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	43015612	rs3816181	G	T	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	43015704	rs3816182	T	A	4397.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:209,215:0.51:424
chr2	43015719	rs3816183	T	C	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr2	43015757	rs3816184	G	A	7349.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	43015902	rs3816185	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	43019730	rs2304656	A	G	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	43452183	rs7933	A	G	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr2	43453465	.	CCCGCAGTGGCCGGAG	C	7674.73	.	AC=1;AF=0.500;AN=2;DP=446;set=Intersection	GT:AD:AF:DP	0/1:217,205:0.49:422
chr2	43514036	rs11900952	G	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.156;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:69,63:0.48:132
chr2	43625078	rs7605661	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr2	43625404	rs77442683	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	43711523	rs998768	G	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr2	43726006	rs145039246	G	A	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:222,218:0.50:440
chr2	43735713	rs6761129	C	T	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:142,132:0.48:274
chr2	43779206	rs142593751	G	GT	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr2	43799070	rs3752355	C	T	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	43800193	rs73925547	G	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr2	43800254	rs112630954	C	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	43801911	rs17031074	G	A	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:184,194:0.51:378
chr2	43802261	rs970175	C	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	43804229	rs13021894	T	C	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:269,234:0.47:503
chr2	43805739	rs61754256	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr2	43813498	rs184013751	A	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr2	43817863	rs111491380	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr2	43871983	rs12105773	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	43902511	rs755862	G	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	43903066	rs3828297	A	G	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr2	43903354	rs4952675	T	C	13445.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr2	43903483	rs4952995	T	C	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	43905898	rs142175341	G	GAGGTGGAGGTGC	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	43905937	rs10171823	C	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	43919934	rs17031284	G	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	43921489	rs12616572	A	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	43922181	rs114160011	T	C	123.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	43926943	rs7606783	T	A	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	43931176	rs4953002	T	C	12508.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr2	43931321	rs4953003	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr2	43933354	rs9678037	C	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	43937199	rs13396555	G	A	2070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.504;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:126,112:0.47:238
chr2	43937723	.	CTT	C	380.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.31;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:5,17:0.77:22
chr2	43947944	rs17031344	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	43953664	rs7574334	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	43958517	rs115285829	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	43965700	rs60748869	G	GT	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	43968167	rs2278358	G	A	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:224,166:0.43:390
chr2	43968240	rs114284417	A	G	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:165,145:0.47:310
chr2	43973099	rs17031368	A	G	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:153,131:0.46:284
chr2	43980744	rs201067670	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.081;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr2	43985940	rs7570252	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	43991310	rs10205936	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	43991357	rs7565517	A	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	44001139	rs17031488	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	44004010	rs2288709	T	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr2	44004099	rs17031494	T	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	44010620	rs3815995	G	A	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	44010887	rs2288707	G	T	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	44014301	rs3765000	A	G	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:75,117:0.61:192
chr2	44016885	rs3815994	C	G	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:118,101:0.46:219
chr2	44019799	rs13420319	G	A	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.964;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:84,77:0.48:161
chr2	44019930	rs10199777	C	T	2429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-1.177;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:85,66:0.44:151
chr2	44019936	rs10199778	C	T	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-1.622;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:83,67:0.45:150
chr2	44021826	rs9309107	T	A	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	44022970	rs1025447	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr2	44027948	rs3792013	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	44028013	rs11556157	A	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.078;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr2	44028180	rs13432783	C	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.874;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	44032189	rs10177630	C	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr2	44036800	rs4952683	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	44036913	rs8302	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	44036922	rs10186552	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	44040401	rs6720173	G	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr2	44055017	.	CA	C	826.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr2	44066174	rs3806471	T	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	44071625	rs4148209	C	A	11191.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:1,428:1.00:429
chr2	44071639	rs4148210	C	T	13026.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr2	44071743	rs4148211	A	G	11786.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr2	44071833	rs4148212	A	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	44079004	rs4148214	T	C	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	44101214	rs10709506	CA	C	1419.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	44101229	rs34198326	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	44101394	rs4953027	A	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	44101430	rs4952689	T	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	44101538	rs28517482	C	T	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	44101649	.	G	GCCC	2358.73	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr2	44101711	rs13405698	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	44102491	rs4148221	C	T	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:218,169:0.44:387
chr2	44104610	rs10609687	ACT	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.67;ReadPosRankSum=0.725;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	44104925	rs6544718	T	C	13162.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr2	44116836	rs2955280	C	T	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	44123672	rs3839036	TC	T	3335.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	44145374	rs7568481	G	T	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	44152180	rs4952694	G	A	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr2	44161457	rs72877173	A	G	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr2	44161854	.	GA	G	449.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	44172444	rs28394191	A	C	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:3,349:0.99:352
chr2	44172636	rs13022151	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr2	44173422	rs7594526	T	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,44:0.42:104
chr2	44186239	rs377649939	T	C	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:104,136:0.57:240
chr2	44187829	rs10190161	A	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr2	44190783	rs35035668	T	C	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:189,176:0.48:365
chr2	44428242	rs73924234	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	44445686	rs74523689	A	G	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=2.009;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr2	44471313	rs372100783	GA	G	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.896;QD=8.35;ReadPosRankSum=-1.017;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	44471326	rs143311578	CAT	C	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.921;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.891;QD=17.73;ReadPosRankSum=-0.235;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	44502788	rs3738985	A	C	13254.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr2	44508835	rs11124986	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	44512971	rs3768919	G	A	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr2	44528111	rs77316881	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr2	44528267	rs61179824	GT	G	32009.73	.	AC=2;AF=1.00;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	1/1:0,887:1.00:887
chr2	44531499	rs116684735	G	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr2	44539913	.	C	CAGCTATAAATACAAG	733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=11.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.308;SOR=3.586;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	44539918	.	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.157;SOR=3.048;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr2	44539920	.	T	TA	502.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=8.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.104;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	44539921	rs200080361	C	CTAT	502.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.146;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.434;SOR=2.663;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr2	44545232	rs150487076	CTG	C	1457.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.445;QD=8.68;ReadPosRankSum=-2.482;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:49,119:0.71:168
chr2	44545233	.	TG	T	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.008;QD=0.61;ReadPosRankSum=1.620;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:133,35:0.21:168
chr2	44548613	rs2241871	T	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	44565447	rs2289463	A	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	44569443	rs114478096	C	G	211.56	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	44569474	rs2304769	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	44570776	rs17580226	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	44570804	rs12053381	C	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr2	44571812	rs138539890	ACT	A	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	44573624	rs698763	G	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	44573658	rs698764	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	44683549	rs113224000	A	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	44858596	.	GA	G	28	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5001;HP=11;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=28;QD=14.0;SC=GTTTAAATAAGAAAAAAAAAC;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=3;WE=44858604;WS=44858589;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	44858618	rs79931447	T	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.122;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	44858687	rs10191477	T	C	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr2	44931314	.	G	C	301.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	44931520	rs343989	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr2	44942317	.	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.635;QD=14.51;ReadPosRankSum=-0.871;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	44942384	rs343957	C	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	44981119	rs3738980	T	G	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,103:0.40:257
chr2	45171842	rs338074	A	G	25343.77	.	AC=2;AF=1.00;AN=2;DB;DP=984;set=Intersection	GT:AD:AF:DP	1/1:1,974:1.00:975
chr2	45640374	rs3755073	C	A	5655.73	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:320,293:0.48:613
chr2	45645512	rs2276655	C	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:235,194:0.45:429
chr2	45647071	rs3213789	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:92,58:0.39:150
chr2	45773816	rs2276657	C	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	45774548	rs1865685	A	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	45780962	rs3816107	C	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	45790000	rs11900809	A	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	45801621	rs6544833	C	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	45806963	rs374392017	TA	T	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.131;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=6.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-1.123;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:104,28:0.21:132
chr2	45806964	.	A	T	384.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.312;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.619;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:85,48:0.36:133
chr2	45808963	rs10611302	CTT	C	1119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.017;QD=9.49;ReadPosRankSum=0.016;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:59,59:0.50:118
chr2	45809059	rs10611303	GTC	G	1102.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	45826923	rs149952243	A	G	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:113,115:0.50:228
chr2	45879449	rs2230498	C	T	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:238,230:0.49:468
chr2	45879610	rs637909	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	46203796	rs2278786	G	C	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,72:0.51:141
chr2	46203861	rs188594563	A	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr2	46228391	rs374169133	CAT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-1.017;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	46234568	rs10188306	A	G	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:160,183:0.53:343
chr2	46583235	rs6743991	C	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	46583278	rs61586942	C	CG	328.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=15.092;MLEAC=1;MLEAF=0.500;MQ=62.41;MQRankSum=2.768;QD=14.94;ReadPosRankSum=1.386;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	46583279	rs142684263	C	CT	328.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=15.092;MLEAC=1;MLEAF=0.500;MQ=62.41;MQRankSum=2.768;QD=14.94;ReadPosRankSum=1.519;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	46583281	rs75984373	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=15.092;MLEAC=1;MLEAF=0.500;MQ=62.41;MQRankSum=2.768;QD=15.35;ReadPosRankSum=1.584;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	46583593	rs2278753	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	46583709	rs114262222	T	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr2	46602766	rs146376480	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr2	46603584	rs150366618	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr2	46603671	rs7557402	C	G	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:146,90:0.38:236
chr2	46605659	rs7571218	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	46609572	rs59901247	A	C	7441.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:374,373:0.50:747
chr2	46611884	.	T	G	904.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	46771134	rs6714484	G	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr2	46799852	rs1451153	G	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	46819815	rs2305350	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr2	46840735	rs3213985	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	46842410	rs2242033	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	46844247	rs113423551	G	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	46844616	rs76740178	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	46846044	.	C	T	129.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	46851182	rs13430706	T	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.54;ReadPosRankSum=-1.068;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	46985544	rs41483445	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	46986809	rs41449044	C	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:118,122:0.51:240
chr2	46987300	rs3768720	T	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	47044277	rs2289930	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	47045267	rs2289931	G	A	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	47045309	rs2289933	C	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:107,121:0.53:228
chr2	47049409	rs2278715	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr2	47049453	rs1053952	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	47081092	rs11687883	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.658;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	47083028	rs112990716	ATATG	A	645.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr2	47083044	rs1079	A	T	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-2.045;QD=11.20;ReadPosRankSum=0.584;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:45,46:0.51:91
chr2	47085398	rs2278711	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	47132945	rs7600882	G	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	47133055	rs11890177	T	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:74,75:0.50:149
chr2	47177787	rs2033533	G	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	47201797	rs6745836	A	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	47202314	rs2304286	C	T	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	47220414	rs6544948	T	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	47251469	rs2304290	G	C	11967.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr2	47251634	rs6713052	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	47256297	rs2304289	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	47256618	rs7575628	A	G	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	47273511	rs13427658	C	T	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	47273668	rs12712986	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	47277207	rs3816066	CA	AG	16171.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr2	47279040	rs151120049	GACAC	G	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr2	47314048	rs2280647	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.80;ReadPosRankSum=-2.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	47314052	rs1474394	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	47317379	rs79866388	G	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,68:0.47:145
chr2	47317452	rs192163418	G	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr2	47348347	rs1880583	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:131,100:0.43:231
chr2	47357564	rs59073987	A	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	47378628	.	G	C	575.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	47382214	rs815806	C	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	47596144	rs72882759	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr2	47601106	rs1126497	T	C	9427.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	47602353	rs6744170	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	47602570	rs73927785	C	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	47604118	rs141632294	A	AT	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr2	47604866	rs58450758	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	47604949	rs140266905	CCTTA	C	1359.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	47613788	rs77204711	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr2	47630550	rs2303426	C	G	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	47656801	rs2347794	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	47672569	rs1981929	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	47690404	rs3771278	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	47690404	.	TCACATCT	CCACATCC,CCACGTCC	72	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3,5;NR=6,5;PP=72,38;QD=13.9408749847;SC=GATGATGACTTCACATCTCTG;SbPval=0.75;Source=Platypus;TC=20;TCF=8;TCR=12;TR=9,10;WE=47690419;WS=47690394;set=Platypus	GT:AF:DP	0/1:0.45:20
chr2	47690408	rs3771279	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=1.334;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	47690411	rs3771280	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	47691317	rs147053274	C	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	47693706	rs3732182	G	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	47693959	rs3732183	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.04;ReadPosRankSum=-0.507;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	47698308	rs3764959	A	G	174.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	47702460	rs17218452	T	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=2.672;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	47739551	rs2303424	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr2	47748292	rs2278139	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	48018314	rs3136282	T	A	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr2	48022900	rs3136316	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	48023115	rs1800935	T	C	2550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.471;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:148,138:0.48:286
chr2	48025694	rs1800936	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	48026286	rs55708305	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:117,100:0.46:217
chr2	48027375	rs2020913	T	C	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:211,170:0.45:381
chr2	48027394	rs56371757	C	T	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:161,185:0.53:346
chr2	48030458	rs2072447	G	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	48032740	rs267608102	AT	A	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.623;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr2	48032874	rs2234731	ACTAT	A	2588.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	48032937	rs3136359	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	48033272	rs148100105	ATTTTTGTTTTAATTCCT	A	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	48033551	rs3136367	C	G	9975.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.91;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	48033838	rs199687113	C	CAA	2493.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:44,75:0.63:119
chr2	48033890	.	CTTT	C	2739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.306;QD=22.46;ReadPosRankSum=1.437;SOR=0.251;set=HC	GT:AD:AF:DP	0/1:45,77:0.63:122
chr2	48036130	rs149325575	C	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	48037619	rs116050979	C	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	48040904	rs373765859	G	GA	4920.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.36;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	48046012	.	T	TA	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.637;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:113,92:0.45:205
chr2	48050320	rs35935360	T	C	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:97,107:0.52:204
chr2	48132485	.	CG	C	31	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=5;HapScore=2;MGOF=126;MMLQ=18;MQ=60.0;NF=3;NR=2;PP=31;QD=12.4;SC=ACTGCGGCACCGGGGGACCCG;SbPval=0.65;Source=Platypus;TC=5;TCF=3;TCR=2;TR=5;WE=48132493;WS=48132475;set=Platypus	GT:AD:AF:DP	1/0:0,5:1.00:5
chr2	48132541	.	CCCCGCCCG	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=1.820;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	48573895	rs79073127	G	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:115,100:0.47:215
chr2	48586409	rs137947879	ATTTAGTT	A	766.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr2	48602252	rs17855177	C	T	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:229,191:0.45:420
chr2	48681850	rs148229375	T	C	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:193,183:0.49:376
chr2	48689229	rs80093453	T	G	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-0.478;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:87,92:0.51:179
chr2	48722755	rs4443044	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	48725610	rs3811519	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=1.588;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	48734576	rs6716341	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	48738687	rs4528813	G	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	48822381	rs2140551	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:117,77:0.40:194
chr2	48844968	rs2293269	C	G	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:140,170:0.55:310
chr2	48847918	rs10634616	G	GAATA	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	48873662	rs13396590	T	C	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:208,213:0.51:421
chr2	48873978	rs10432667	A	G	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:241,213:0.47:454
chr2	48898798	rs3920390	T	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	48906625	rs1965508	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	48915871	rs11125179	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:167,136:0.45:303
chr2	48915926	rs61996314	A	G	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr2	48921375	rs2293275	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.089;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr2	48925746	rs6755901	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	48925986	rs70946824	AT	A	527.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=1.620;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr2	48948802	rs4490239	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr2	48948856	rs4637173	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr2	48952701	rs6545063	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	48956431	rs11892719	T	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr2	48958291	rs112078810	T	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	48982755	.	G	GGCTGCA	259.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	49003458	rs62135453	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	49003566	rs10194838	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	49215977	rs2072488	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	49216284	rs2072487	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	49510173	rs7578654	A	C	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:146,154:0.51:300
chr2	50170729	rs1345562	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr2	50201110	rs9636391	A	G	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:88,87:0.50:175
chr2	50201383	rs4971883	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	50280283	rs1363050	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.573;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	50280338	rs1363049	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	50434759	rs1715984	C	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	50539971	rs116496569	T	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	50540027	rs10203511	A	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	50574485	rs13422484	A	G	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	50574508	rs74605123	A	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:123,105:0.46:228
chr2	50692819	rs10168838	T	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	50693504	rs75315267	AAC	A	3967.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	50699305	rs2075234	T	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	50733545	rs13008919	G	T	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	50733860	rs7584062	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	50758657	rs2066948	T	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	50780219	rs13429627	T	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	50858251	rs2113406	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.616;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	50966283	rs1546667	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	51146914	rs58905388	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.028;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	51149072	rs7423296	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr2	51149102	rs4327263	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.27;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	51150432	rs112205397	C	CA	194.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	51150462	rs72823581	A	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	51254538	rs13426386	C	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	51254901	rs1045874	G	A	6135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.446;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.784;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:399,378:0.49:777
chr2	52929658	rs6739931	A	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.38;ReadPosRankSum=1.465;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	52929707	rs187975981	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr2	52929780	rs6726935	T	G	1943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-0.336;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:80,54:0.40:134
chr2	52929787	rs6740149	A	C	1943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.061;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:81,52:0.39:133
chr2	53832072	rs2357490	C	T	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:137,169:0.55:306
chr2	53920931	rs7563054	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	53920970	rs192039591	A	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr2	53921270	rs3731970	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	53943696	rs3213768	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr2	53955741	rs77366072	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	53956838	rs10490467	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	53990532	rs13397311	C	T	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,112:0.61:185
chr2	53992593	rs2287339	A	T	7995.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:412,404:0.50:816
chr2	54014558	rs2287342	G	T	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:326,305:0.48:631
chr2	54023247	rs72502136	GT	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	54024626	rs2692514	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.881;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	54035650	rs2287346	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	54041983	rs2542571	G	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:122,91:0.43:213
chr2	54042132	.	CTTTTTTTT	C	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.436;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	54114967	rs805399	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:67,82:0.55:149
chr2	54115904	rs805400	A	G	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.387;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:127,150:0.54:277
chr2	54116003	rs805401	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-3.913;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr2	54117143	rs186449900	A	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	54120025	rs805408	A	T	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:138,160:0.54:298
chr2	54120204	rs805409	A	G	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	54120820	rs805412	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	54122956	rs698856	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	54122984	rs698857	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	54124901	rs80145461	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	54125258	rs805416	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	54125495	rs805417	T	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.286;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	54127041	rs805423	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:85,70:0.45:155
chr2	54135429	rs805319	G	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr2	54137136	rs2056650	A	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=2.029;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr2	54148253	.	G	GA	190.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	54150079	rs3213774	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	54150351	rs182457354	A	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr2	54152927	rs2302879	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	54155240	rs805349	A	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:133,110:0.45:243
chr2	54158957	rs805352	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr2	54161885	rs805357	G	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr2	54163854	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=1.126;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr2	54175763	rs2302880	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	54343012	rs7573491	C	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr2	54362437	rs2357954	T	C	220.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=0.000;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	54369120	.	TTG	T	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=2.333;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:90,20:0.18:110
chr2	54482964	rs843704	C	T	10609.77	.	AC=1;AF=0.500;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	0/1:423,503:0.54:926
chr2	54494370	rs865816	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	54587378	rs2280717	C	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr2	54608883	rs11677654	C	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr2	54839276	rs3796014	A	G	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr2	54844790	rs2229506	C	T	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:243,213:0.47:456
chr2	54844926	rs7569127	T	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	54844970	rs62134708	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	54848728	rs12713274	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	54849508	rs2228365	A	G	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:232,185:0.44:417
chr2	54855137	rs2971887	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	54884870	rs966003	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	54894649	rs907136	G	A	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.114;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:81,79:0.49:160
chr2	54895820	rs113161658	T	TA	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.441;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr2	55071094	rs78418081	T	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.889;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.666;QD=14.26;ReadPosRankSum=0.092;SOR=1.857;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	55071101	.	T	TTGTGTG	945.73	.	AC=1;AF=0.500;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;QD=29.55;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr2	55074875	.	A	AGG	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=0.701;SOR=2.412;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	55074878	.	A	ATCGTAG	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=0.737;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	55074880	.	TA	T	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.663;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=8.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.62;ReadPosRankSum=0.601;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	55074887	.	G	GT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.32;ReadPosRankSum=0.000;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	55074889	.	TC	T	367.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.057;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.64;ReadPosRankSum=1.027;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	55074891	.	TACGATCC	T	241.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.98;ReadPosRankSum=0.546;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	55081033	rs79497035	C	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr2	55091186	rs6727286	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	55093842	rs1961245	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,69:0.49:142
chr2	55096213	rs73938642	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	55096321	rs55797267	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr2	55096396	rs56101319	T	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr2	55096589	rs61088502	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.21;ReadPosRankSum=1.849;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	55098769	rs73938647	G	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:106,123:0.54:229
chr2	55098829	rs57211584	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr2	55106638	rs7594320	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr2	55121930	rs998230	C	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	55138272	rs2304688	G	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	55179597	rs17046509	T	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr2	55180965	rs4671998	G	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	55181022	.	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.308;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=1.82;ReadPosRankSum=2.036;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:82,41:0.33:123
chr2	55187297	rs58866010	A	AG	3092.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	55189576	rs60802631	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.209;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	55191725	rs11895689	A	C	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,118:0.46:254
chr2	55194445	rs73936506	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.60;ReadPosRankSum=-0.664;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	55195955	rs73936508	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr2	55201038	rs2255026	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	55214618	rs2580769	A	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr2	55214912	rs2580770	C	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	55252177	rs78508174	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	55254703	rs56290934	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	55277537	rs73936817	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr2	55404794	rs14026	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	55404925	rs6545477	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr2	55407754	rs6716066	C	T	12420.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr2	55407935	rs10183953	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	55433374	rs142880983	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr2	55436000	rs201125161	T	TC	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.524;QD=4.57;ReadPosRankSum=-0.616;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	55436488	rs139842520	GA	G	59	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	55436934	rs9677948	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chr2	55439963	rs2118283	C	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	55444858	rs77333914	A	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	55470115	rs11357	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	55470980	rs144283589	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	55471407	rs2589083	T	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	55473386	rs3833559	CAT	C	1892.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr2	55473681	rs2589081	A	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	55489629	rs2589093	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	55490819	rs1056445	G	T	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:146,149:0.51:295
chr2	55522422	rs2589110	A	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:142,116:0.45:258
chr2	55528257	rs2576699	A	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr2	55535828	rs13407931	T	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	55544622	rs10153861	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	55555593	rs6759625	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	55561896	rs7589558	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr2	55563777	rs6735009	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	55566508	rs7561604	C	G	55.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.95;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	55573533	rs6738517	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr2	55576585	rs13389151	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr2	55576634	rs2589090	C	T	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:173,145:0.46:318
chr2	55582601	rs5831355	T	TTTGACACA	567.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr2	55589434	rs3111412	T	A	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:117,106:0.48:223
chr2	55599655	rs3111411	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr2	55749085	rs12992408	T	G	297.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-0.298;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	55760940	rs4671248	G	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	55762957	rs3762513	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.750;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr2	55764754	rs11280083	AATATGAATAC	A	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr2	55771050	rs3816489	C	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	55771161	rs1045910	A	G	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr2	55804281	rs3791654	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-1.542;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	55805440	rs2903704	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	55806924	rs67834644	CAT	C	591.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	55808969	rs1975486	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	55812061	rs4312532	A	G	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr2	55812073	rs7594279	T	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,78:0.52:151
chr2	55842424	rs70954138	CTTTT	C	211.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	55844445	rs782594	T	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,63:0.52:121
chr2	55863360	rs35916020	T	TA	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.189;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	55867938	rs34679603	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	55873301	rs2627776	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	55883317	rs2627765	G	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	55887176	rs7592219	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-1.546;QD=8.60;ReadPosRankSum=-1.636;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	55889062	rs782604	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	55894090	rs13009649	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	55894247	rs782637	T	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr2	55898929	rs2627771	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.73;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	55898929	.	AC	GC,GT	60	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=0;MMLQ=24;MQ=60.0;NF=7,5;NR=8,4;PP=47,60;QD=5.45141416981;SC=GCCACTGCACACCAGCCTGGG;SbPval=0.61;Source=Platypus;TC=15;TCF=7;TCR=8;TR=15,9;WE=55898938;WS=55898919;set=Platypus	GT:AF:DP	0/1:1.00:15
chr2	55898930	rs2627772	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.000;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	55899228	rs782631	A	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	55900283	rs782629	A	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	55912120	rs782572	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr2	55914573	rs11386711	C	CA	70.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	55914621	rs809732	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.749;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	55920749	rs73942924	C	T	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:159,137:0.46:296
chr2	56103922	rs200161978	T	TAC	926.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr2	56145270	rs10496056	A	G	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:205,191:0.48:396
chr2	56216052	rs10865292	G	A	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:164,153:0.48:317
chr2	56227807	rs73940377	A	G	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:185,145:0.44:330
chr2	56411817	rs35587531	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr2	56611386	.	CT	C	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.572;QD=2.20;ReadPosRankSum=0.387;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:104,38:0.27:142
chr2	56611543	rs34920355	C	CAAG	1748.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:128,89:0.41:217
chr2	58275666	rs986512	G	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	58350340	rs17049354	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:114,117:0.51:231
chr2	58362342	rs6733307	A	G	5764.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:207,284:0.58:491
chr2	58374508	rs191876279	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	58381750	rs6739344	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	58386510	.	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,54:0.59:92
chr2	58387000	rs3732136	C	T	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	58388696	rs848291	A	G	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	58390168	rs61753272	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr2	58431446	rs62140045	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr2	58431477	rs149883795	A	AAATT	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	58453711	.	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	58478609	rs10439485	C	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr2	60679677	.	C	T	705.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr2	60679942	rs17331129	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	60687959	rs7569946	A	G	13842.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr2	60768978	rs2665668	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	60772979	rs114566772	G	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	61007782	rs10496089	A	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	61008036	rs3845814	C	T	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	61009909	rs10197672	C	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.151;QD=7.09;ReadPosRankSum=0.565;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr2	61010459	rs11407857	C	CT	128.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.696;QD=9.18;ReadPosRankSum=1.027;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr2	61014952	rs4672404	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	61118739	rs10185028	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	61121492	rs842644	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	61128268	rs6707682	G	A	718.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.588;QD=34.23;ReadPosRankSum=-1.083;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr2	61128284	rs2115592	T	C	153.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=-1.769;QD=11.83;ReadPosRankSum=-1.366;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	61128285	.	CTTT	C	144.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.012;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=-1.769;QD=11.13;ReadPosRankSum=-1.366;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	61145498	rs149570046	AT	A	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.040;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:103,31:0.23:134
chr2	61175312	rs12479056	T	C	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:251,236:0.48:487
chr2	61191995	rs55776317	G	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=-1.036;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	61245551	rs12996059	G	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr2	61245604	rs70959887	AT	A	60.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	61298684	.	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.221;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr2	61304002	rs1729657	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	61304377	rs10172306	A	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	61308517	rs1177295	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	61308569	rs72265183	A	AT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.255;QD=4.40;ReadPosRankSum=-3.224;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr2	61315565	rs7563415	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr2	61349446	rs1177284	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	61384906	rs7558954	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr2	61385100	rs1665258	G	A	2802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.76;ReadPosRankSum=-0.683;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:61,74:0.55:135
chr2	61385105	rs1729671	G	C	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=-0.643;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:58,70:0.55:128
chr2	61385248	rs1177309	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.831;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	61389737	rs1729674	T	G	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.101;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:71,43:0.38:114
chr2	61389799	rs1729673	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	61406195	rs112409921	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr2	61408710	rs76939509	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	61412559	rs777585	C	T	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	61413723	rs1809028	A	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	61415492	rs14170	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr2	61417617	rs777591	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	61448533	rs116279974	A	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr2	61450454	rs2123111	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	61456611	rs145830957	C	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-1.487;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	61456674	rs112467196	ACTT	A	3476.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:128,93:0.42:221
chr2	61483715	rs68101593	A	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=1.895;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	61483725	rs72811484	T	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=0.534;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	61493023	rs114424053	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr2	61522123	rs13014347	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	61538613	.	G	GAAAAAGAAAAAAAAGAGAAAA	998.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.66;MQRankSum=1.667;QD=47.57;ReadPosRankSum=1.899;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr2	61552484	rs2593624	T	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr2	61558247	rs115634960	T	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	61575308	rs6722430	A	G	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:3,338:0.99:341
chr2	61576517	rs811378	G	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	61605614	rs10208769	T	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr2	61610545	rs76320677	A	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr2	61622251	rs3213951	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.653;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	61708535	.	C	G	139.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	61713209	rs35844473	GGAAAATC	G	523.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr2	61713218	rs60155512	T	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.461;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.51;ReadPosRankSum=0.308;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	61713218	.	TGT	AGG	956	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=4;MGOF=8;MMLQ=27;MQ=60.0;NF=0;NR=9;PP=956;QD=112.163097207;SC=AGGAAAATCTTGTGTTTGTAT;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=9;WE=61713228;WS=61713199;set=Platypus	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	61713220	rs61235340	T	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=0.654;SOR=2.012;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	61722519	rs74392163	G	GA	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	61723953	rs113759808	AT	A	394.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	61729258	rs2305155	A	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	61729268	rs2305156	T	C	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	61749690	rs3732171	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=1.073;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr2	61749716	rs3732170	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	61761169	rs1446532	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	62053878	rs11392751	G	GA	88	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	62063093	rs11299120	TA	T	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=3.015;QD=2.65;ReadPosRankSum=-0.390;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr2	62066927	rs4672457	A	G	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr2	62069358	rs11125895	T	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:98,129:0.57:227
chr2	62069526	rs146650326	G	T	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=3.293;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:65,52:0.44:117
chr2	62069526	.	GAC	TAT	566	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=8;NR=14;PP=566;QD=28.1576306756;SC=GATATATAGTGACTGGAGCTG;SbPval=0.65;Source=Platypus;TC=59;TCF=23;TCR=36;TR=22;WE=62069536;WS=62069516;set=Platypus	GT:AD:AF:DP	0/1:37,22:0.37:59
chr2	62069528	rs11125896	C	T	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=2.313;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:65,50:0.43:115
chr2	62073918	rs58256183	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	62074140	rs113296637	A	AAC	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=38.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	62081012	rs4270331	A	C	25355.77	.	AC=2;AF=1.00;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	1/1:0,994:1.00:994
chr2	62081217	rs1881616	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	62095994	rs4672463	A	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	62099762	rs200509643	C	CA	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	62099791	rs115370918	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.000;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	62103454	rs75720105	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	62104343	rs7571143	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	62104660	rs11371205	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=9.047;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.753;QD=1.18;ReadPosRankSum=-1.790;SOR=2.055;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr2	62107376	rs5831625	T	TC	1047.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	62107632	rs2272429	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr2	62110571	rs12713451	G	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=-0.231;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	62112221	rs11429418	G	GA	4900.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:11,236:0.96:247
chr2	62112222	rs67059162	G	A	12079.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.40;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	62112246	.	CT	C	973.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-1.036;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:54,68:0.56:122
chr2	62133115	rs4672466	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	62196080	.	CTT	C	94.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-0.000;QD=5.89;ReadPosRankSum=0.908;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	62282730	rs13425453	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr2	62363179	rs7571084	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:64,88:0.58:152
chr2	62433097	rs78689106	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:97,89:0.48:186
chr2	62448855	rs10189468	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	62729674	rs4672527	T	C	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:142,130:0.48:272
chr2	62729747	rs11443505	G	GA	803.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr2	62732987	rs144348645	C	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr2	62733253	rs11676567	C	T	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:163,161:0.50:324
chr2	62738883	rs6757222	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr2	62738931	rs6757448	G	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:135,126:0.48:261
chr2	62739135	rs4405748	A	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.167;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	63220659	rs188275816	G	A	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:159,123:0.44:282
chr2	63457026	.	GA	GAA,G	55.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	0/1:0.50:12
chr2	63486429	rs992214	C	T	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	63540234	rs75116096	C	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr2	63540523	rs1517402	A	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	63605772	rs2292794	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	63720210	rs7563623	A	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	63798333	rs4671068	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	63816672	rs10469944	C	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	63822785	rs2305157	T	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	63826528	rs7606045	T	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	63831734	rs9309355	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	63849491	rs262496	T	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:207,181:0.47:388
chr2	63850011	rs10200556	C	T	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-1.498;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:41,70:0.63:111
chr2	64069732	rs6546029	G	A	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	64085114	rs10183479	G	A	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	64112706	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.244;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr2	64117152	rs148435589	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr2	64118158	rs368306965	TA	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-1.104;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	64139834	rs2302808	A	T	1623.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-0.146;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr2	64139901	rs2302809	A	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	64140301	rs10207847	A	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	64147834	rs1440002	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	64160864	rs34015596	G	C	10836.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr2	64189566	rs17028275	A	G	6156.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	64195997	rs34977697	C	CA,CAAA	492.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.51;QD=25.93;SOR=1.292;set=HC	GT:AD:AF:DP	1/2:0,7,12:0.37,0.63:19
chr2	64321823	rs3731962	A	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr2	64323526	rs76204822	T	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr2	64752493	rs11899438	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-0.076;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	64779509	rs3770740	G	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:167,120:0.42:287
chr2	64794945	rs7598893	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr2	64796479	rs6546087	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	64796817	rs2287531	A	C	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:97,117:0.55:214
chr2	64796847	rs2287532	A	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr2	64796932	rs2287533	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	64799937	rs147232569	TAA	T	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr2	64819249	rs35699964	T	TAA	430.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.426;QD=18.73;ReadPosRankSum=1.132;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	65131511	rs13027905	A	G	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:124,154:0.55:278
chr2	65131721	rs4140739	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:101,81:0.45:182
chr2	65132099	rs4140738	G	A	3009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-3.986;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:192,156:0.45:348
chr2	65159464	rs115428455	C	T	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.213;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:172,130:0.43:302
chr2	65159596	rs1035165	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,52:0.45:115
chr2	65200618	rs4671636	C	A	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=1.164;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:61,54:0.47:115
chr2	65248271	rs7563131	G	A	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:258,203:0.44:461
chr2	65298657	rs13389745	A	G	6318.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:268,303:0.53:571
chr2	65298839	rs17849707	A	G	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:211,239:0.53:450
chr2	65299614	rs35694840	C	T	5205.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:313,270:0.46:583
chr2	65299766	rs55952639	T	C	12695.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:3,484:0.99:487
chr2	65300071	rs140943605	AAGG	A	4841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.361;QD=8.06;ReadPosRankSum=2.029;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:349,252:0.42:601
chr2	65301547	rs79568756	C	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:188,180:0.49:368
chr2	65315880	rs1420184	G	C	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr2	65316302	rs115311191	G	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr2	65331989	rs151008389	CTATAAGCTA	C	5459.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:151,144:0.49:295
chr2	65341374	rs17029863	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	65469810	rs11386253	T	TC	3292.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:165,141:0.46:306
chr2	65478371	rs7574628	T	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	65480917	rs17030083	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr2	65481008	rs268871	A	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=1.120;QD=6.19;ReadPosRankSum=0.428;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:82,50:0.38:132
chr2	65488538	rs268862	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr2	65495570	rs55843720	A	C	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.244;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.862;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	65495570	.	AT	CC	1104	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=3;HapScore=4;MGOF=8;MMLQ=27;MQ=60.0;NF=15;NR=2;PP=1104;QD=68.0863455801;SC=GGTACCAAATATTACGTTCTA;SbPval=0.95;Source=Platypus;TC=41;TCF=30;TCR=11;TR=17;WE=65495581;WS=65495560;set=Platypus	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	65495571	rs60931828	T	C	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.050;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.782;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	65495573	rs72536103	A	AC	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr2	65495887	rs268875	G	A	3758.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:238,195:0.45:433
chr2	65496018	rs11424	C	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr2	65496058	rs17038564	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	65559027	rs2271198	A	G	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	65571499	rs7579551	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	65604914	rs268120	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr2	66665146	rs2280334	T	C	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:178,208:0.54:386
chr2	66795979	rs77873518	T	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:131,89:0.40:220
chr2	66796098	.	G	GT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.510;QD=1.66;ReadPosRankSum=-0.024;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr2	66798282	rs2861108	G	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	67630980	rs3770657	G	A	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	67631831	rs61740794	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,56:0.42:133
chr2	67632125	rs3770655	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	67637196	rs1569	G	A	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	68358341	rs62145930	T	C	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr2	68358653	rs17035004	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	68364321	rs144172434	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	68385097	rs2044693	A	G	9438.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	68385516	rs7590838	G	C	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr2	68389276	rs11402583	G	GA	741.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.596;QD=15.78;ReadPosRankSum=2.129;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr2	68389557	rs141022040	TTA	T	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.315;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr2	68415563	rs11343435	CT	C	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	68415767	rs687	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:165,171:0.51:336
chr2	68444143	rs66891931	TAC	T	2569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.159;QD=16.06;ReadPosRankSum=0.795;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:59,101:0.63:160
chr2	68444168	rs12328306	A	G	2542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.898;QD=16.84;ReadPosRankSum=-0.114;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:46,105:0.70:151
chr2	68444171	rs28585403	C	G,CGCAG	8095.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=194;set=Intersection	GT:AF:DP	1/2:0.74,0.26:158
chr2	68483396	rs7593613	A	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.16;ReadPosRankSum=-1.097;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	68511506	rs5831925	GA	G	1135.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr2	68544136	rs17035262	C	G	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.521;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:106,59:0.36:165
chr2	68544212	rs72904278	G	C	4629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.725;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:310,249:0.45:559
chr2	68544543	rs80351159	G	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr2	68546304	rs4671897	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	68546374	rs4671898	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.566;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr2	68592584	rs880668	T	C	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	68592700	rs3770651	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	68607293	rs72894177	C	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=-1.284;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	68609815	rs76089495	A	G	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:117,104:0.47:221
chr2	68613710	rs2070171	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:101,50:0.33:151
chr2	68620463	rs2289688	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr2	68622658	rs1373200	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	68622782	rs75275323	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,105:0.50:209
chr2	68622914	rs1063479	G	A	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	68622952	rs1050181	G	C	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,86:0.55:156
chr2	68622990	rs6725743	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	68729992	rs11902811	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:87,47:0.35:134
chr2	68740902	rs139367623	TATAGAG	T	650.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	68753240	rs35002937	T	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,87:0.53:165
chr2	68762598	rs142875131	T	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	68794528	rs6751531	G	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	68873071	rs7570797	A	G	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:313,237:0.43:550
chr2	68881938	rs140852128	CA	C	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=2.569;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:21,63:0.75:84
chr2	68882468	rs6722313	T	C	28106.77	.	AC=2;AF=1.00;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	1/1:0,1094:1.00:1094
chr2	68962412	rs61062182	G	A	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:192,182:0.49:374
chr2	69002281	rs11685672	C	G	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:162,188:0.54:350
chr2	69002760	rs10445945	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:99,69:0.41:168
chr2	69009304	rs2271834	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr2	69034454	rs150613820	C	T	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:198,142:0.42:340
chr2	69043264	rs67399232	CT	C	5663.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:148,167:0.53:315
chr2	69043266	rs78107572	T	A	2356.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:169,145:0.46:314
chr2	69043539	rs2271832	G	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr2	69049702	rs61734445	T	C	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:295,241:0.45:536
chr2	69049941	rs10177248	T	C	4334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.701;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:167,218:0.57:385
chr2	69093312	rs2231344	A	G	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:238,205:0.46:443
chr2	69173570	rs1128272	C	T	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	69174183	rs6742850	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	69174478	rs115935857	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr2	69178088	rs74361290	A	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr2	69179901	rs6720209	A	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	69201894	rs4417751	C	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	69207195	rs116508141	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr2	69267126	rs77394848	A	G	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	69297622	rs4591376	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	69300087	rs57008189	G	C	2311.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	69300088	rs67110959	GGAC	G	2302.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	69300093	.	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	69300243	rs10202939	G	A	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	69302886	rs114390027	A	T	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	69304719	rs7424907	T	C	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	69304779	rs13419465	C	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	69317925	rs4854546	G	A	12341.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr2	69318129	rs4241348	T	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	69330118	rs6710260	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	69409029	rs6749826	C	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr2	69420574	rs10627389	G	GTCTC,GTC	391.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=178;set=Intersection	GT:AF:DP	0/1:0.25:84
chr2	69420591	.	T	TCACA	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.439;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr2	69420594	.	CAT	C	326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.252;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr2	69420596	rs7584057	T	C	1277.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=-1.358;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr2	69420622	rs7570011	C	T	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr2	69553375	rs201268947	GAA	G,GA	1069.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.50;ReadPosRankSum=0.130;SOR=0.728;set=HC	GT:AD:AF:DP	1/2:8,32,29:0.46,0.42:69
chr2	69556301	rs60710948	C	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr2	69565563	rs113734896	TA	T	2702.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:111,124:0.53:235
chr2	69565842	rs11296709	TA	T	922.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.12;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	69565844	rs116730412	A	T	931.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	69573029	rs6722492	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	69581478	rs141589776	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:116,117:0.50:233
chr2	69581631	rs78952091	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:87,66:0.43:153
chr2	69581850	rs61401084	T	TA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.206;QD=6.14;ReadPosRankSum=-1.145;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	69583869	rs200053751	CCA	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-0.000;QD=20.14;ReadPosRankSum=1.204;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	69583875	.	T	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-0.000;QD=20.90;ReadPosRankSum=1.185;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	69586293	rs6546505	A	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	69597064	rs57860122	T	TA	990.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr2	69614161	rs6720415	A	G	19753.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=1.550;SOR=0.394;set=HC	GT:AD:AF:DP	1/1:3,766:1.00:769
chr2	69626342	.	C	CA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-0.705;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:36,43:0.54:79
chr2	69633382	rs6546513	A	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	69642513	rs34747434	C	CT	217.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.703;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	69646504	rs7605572	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	69657166	.	C	G	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.736;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr2	69657349	rs113587680	CT	C	161.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.723;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	69664413	rs6758700	A	G	4446.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:288,233:0.45:521
chr2	69692523	rs77961083	T	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	69693747	rs57171084	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	69705992	rs74434369	T	A	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr2	69709919	rs6721259	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:120,89:0.43:209
chr2	69710058	rs3732273	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	69741801	rs6757825	C	T	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:94,123:0.57:217
chr2	69741854	rs6715776	T	G	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	69746296	rs7603932	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:93,67:0.42:160
chr2	69757291	rs3732271	A	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr2	69759415	rs2276687	G	A	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	69771484	rs3771544	C	T	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	69784278	rs3821277	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	70031797	rs3771541	C	G	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	70033649	rs17037076	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	70035174	rs142525768	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr2	70039677	rs2305523	A	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	70043145	rs13392215	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	70043215	rs13405647	T	C	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	70043387	rs10173964	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	70057364	rs3832157	CG	C	957.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	70057448	rs3732266	T	G	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	70068258	rs3836157	CT	C	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	70076954	rs4852349	A	T	792.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.32;ReadPosRankSum=1.576;SOR=0.302;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr2	70098808	rs3214007	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	70098817	rs200164753	CT	C	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	70120909	rs3214822	GA	G	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.335;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	70121197	rs2278934	T	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr2	70123564	rs17037234	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr2	70131320	rs35836496	G	GT	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	70162534	rs2228183	T	G	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	70163939	rs114337610	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	70164034	rs3771531	T	C	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	70164347	rs114949249	A	G	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:248,224:0.47:472
chr2	70164580	rs3217643	C	CAGGG	2159.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	70187727	rs12464297	A	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	70188676	rs3796097	T	C	7827.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr2	70191360	rs10203732	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr2	70392379	rs11126263	G	A	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	70392820	rs17005383	G	C	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	70457784	rs200532251	C	CAA	822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.479;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr2	70479950	rs77060408	A	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	70485320	rs11556184	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr2	70486475	rs3214762	G	GT	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	70502811	rs112551993	T	TTCTG	1652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=1.869;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:19,41:0.68:60
chr2	70520498	rs2272532	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr2	70520846	rs15656	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	70524577	rs2618235	G	A	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:191,142:0.43:333
chr2	70528601	rs2279158	T	C	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:185,177:0.49:362
chr2	70528827	rs2279159	G	A	4558.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:274,231:0.46:505
chr2	70676639	rs538118	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr2	70678173	rs3732249	C	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	70683350	rs11466260	A	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr2	70683753	rs2278791	T	C	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.028;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	70742022	rs10183171	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:144,109:0.43:253
chr2	70900288	rs78306076	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:123,64:0.34:187
chr2	70900403	rs4984	G	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr2	70901785	rs74768494	A	G	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	70901788	rs56014211	GGT	G	4361.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	70905029	rs73937001	T	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:77,82:0.52:159
chr2	70905099	rs2902577	T	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	70905810	rs73937002	C	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr2	70910991	rs11431758	C	CA	2764.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:97,85:0.47:182
chr2	70915134	rs2074820	C	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr2	70915320	rs7340254	T	A	2736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=0.043;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:52,71:0.58:123
chr2	70915323	rs7340145	C	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.84;ReadPosRankSum=-0.368;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:50,69:0.58:119
chr2	70915347	rs7340146	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr2	70917768	rs12691192	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	70917812	rs10084293	C	T	1888.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.298;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=2.015;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:4,84:0.95:88
chr2	70931482	rs4987	G	C	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:113,126:0.53:239
chr2	70933349	rs17006146	C	A	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:68,99:0.59:167
chr2	70933636	rs2287096	T	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.48;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	70933636	.	TCA	CCA,CCC	673	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=28,9;NR=49,22;PP=673,364;QD=9.19183392918;SC=TACACGTTTCTCAGAGCACAG;SbPval=0.52;Source=Platypus;TC=78;TCF=28;TCR=50;TR=77,31;WE=70933646;WS=70933626;set=Platypus	GT:AF:DP	0/1:0.99:78
chr2	70933638	rs73939914	A	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.191;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:61,40:0.40:101
chr2	70995129	rs2287097	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr2	70995217	rs2287098	A	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	71004368	rs4533493	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=24.04;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	71004413	rs55926232	C	CA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.809;QD=6.95;ReadPosRankSum=0.284;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	71012604	rs7566541	G	A	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	71012734	rs7566476	C	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr2	71036482	rs2287101	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr2	71043461	rs722896	C	T	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:199,172:0.46:371
chr2	71058151	rs17006424	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	71058184	rs13421115	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr2	71058835	rs741326	A	G	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:130,126:0.49:256
chr2	71060037	rs6712863	A	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-0.685;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:46,45:0.49:91
chr2	71061108	rs17662453	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:106,80:0.43:186
chr2	71062833	rs11450450	G	GC	11342.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	71127696	rs3732243	G	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.000;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	71160421	rs2270262	G	C	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:155,175:0.53:330
chr2	71170698	rs112291997	GGA	G	3549.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:147,104:0.41:251
chr2	71170892	rs113985534	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr2	71175511	rs35598289	G	GAA	4088.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.268;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:133,129:0.49:262
chr2	71175552	rs34723947	T	TG	5282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.373;QD=13.72;ReadPosRankSum=0.714;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:186,199:0.52:385
chr2	71188004	rs115662543	G	T	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:159,167:0.51:326
chr2	71189857	rs76701704	T	C	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:143,150:0.51:293
chr2	71205976	rs1115049	A	G	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	71206058	rs1115050	A	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	71209687	rs199929092	C	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:127,131:0.51:258
chr2	71211989	rs3796099	A	G	43936.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DB;DP=1649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=0.520;SOR=0.472;set=HC	GT:AD:AF:DP	1/1:1,1644:1.00:1645
chr2	71212432	rs10460571	G	T	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	71297674	rs77352101	G	A	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.257;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:95,85:0.47:180
chr2	71297982	rs2287327	C	T	4790.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:292,248:0.46:540
chr2	71300516	rs17616553	T	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr2	71300819	rs6707250	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr2	71305456	rs6713	C	T	13350.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr2	71336978	rs146624706	TCA	T	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	71351403	rs6748672	C	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr2	71357195	rs11126319	C	A	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:94,119:0.56:213
chr2	71360100	rs72905506	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,67:0.42:159
chr2	71360144	rs10199088	A	C	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:197,150:0.43:347
chr2	71360282	rs13010513	G	A	5146.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:267,259:0.49:526
chr2	71360625	rs1813160	G	T	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.542;QD=8.29;ReadPosRankSum=0.153;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:92,78:0.46:170
chr2	71360723	rs1813159	A	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	71360735	rs138856662	T	TTCC	2537.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	71361332	rs9941620	T	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr2	71367166	rs72905526	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	71375037	rs80193384	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	71376687	rs72905552	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr2	71415479	rs357780	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	71417065	rs357777	G	T	12671.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr2	71429725	rs56871884	T	C	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr2	71429750	rs35398551	A	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	71615571	rs2542529	C	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	71620818	rs6741436	C	T	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	71626679	rs34538815	CT	C	7213.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	71635931	rs12466025	G	T	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	71645628	rs72207075	G	GTT	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	71645854	rs71402979	TGTA	T	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	71645890	rs4852784	G	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	71651939	rs12613800	T	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	71661855	rs35526551	C	CA	2894.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr2	71694113	rs71416709	C	T	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:205,249:0.55:454
chr2	71708825	rs71402983	T	TATCCATCCATCC	672.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr2	71730149	rs13389635	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	71747235	rs11675897	A	G	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr2	71747432	rs11687223	G	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	71747851	rs12713755	T	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	71747899	rs12713756	G	A	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	71755380	rs4852800	A	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	71762232	rs4852801	C	T	20542.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:2,793:1.00:795
chr2	71762310	rs4852802	A	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	71766487	rs7609409	G	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr2	71776345	rs736096	CA	TG	11392.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.239;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	71780215	rs2303596	T	C	16256.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:2,636:1.00:638
chr2	71780821	rs2303597	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	71788779	rs115616395	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr2	71795152	rs2288355	A	T	20173.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr2	71796865	rs10205023	C	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr2	71797176	rs10183967	A	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	71798057	.	CAGATCACACCCAGCATACCCAA	C	559	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.67;NF=0;NR=4;PP=559;QD=146.25;SC=AGCATACACACAGATCACACC;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=4;WE=71798086;WS=71798047;set=Platypus	GT:AD:AF:DP	1/0:14,4:0.22:18
chr2	71801297	rs72902605	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr2	71817003	rs1473228	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	71817444	rs115981643	C	G	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:231,277:0.55:508
chr2	71828423	rs2303604	A	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	71829821	rs1529408	G	T	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	71838597	rs2303606	C	A	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,387:0.99:389
chr2	71847880	rs75026991	C	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	71847943	rs12995778	C	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	71871039	rs84181	A	G	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr2	71871236	rs84182	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	71891361	rs2303599	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:63,52:0.45:115
chr2	71901286	rs2559081	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	71906171	rs1863812	T	C	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	71907930	rs7558412	G	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	71913821	rs13429381	T	G	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:228,227:0.50:455
chr2	72359312	rs2241059	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	72359518	rs12478279	A	G	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:149,148:0.50:297
chr2	72359659	rs144952086	G	A	8500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=918;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=1.522;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:483,433:0.47:916
chr2	72361865	rs2241058	C	A	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr2	72361960	rs2241057	A	G	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:292,265:0.48:557
chr2	72371486	rs371004140	T	G	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:200,202:0.50:402
chr2	72374817	rs199868322	G	A	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:228,210:0.48:438
chr2	72606790	rs66560019	T	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:129,86:0.40:215
chr2	72692272	rs5832083	A	AAG	11685.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	72707874	rs653220	A	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	72741705	rs59422959	CAATA	C	119.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.96;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	72742083	rs57089571	GAC	G	1118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.848;QD=15.33;ReadPosRankSum=-0.793;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:26,47:0.64:73
chr2	72958333	rs61736520	T	C	4931.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:268,250:0.48:518
chr2	73144264	rs140283507	C	CA	842.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr2	73151231	rs1561247	C	T	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	73188221	rs141738633	CCCCTG	C	13127.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.65;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	73188422	rs6710567	G	C	825.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	73195837	rs10565763	TTTCC	T	278.76	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	73315170	rs201414059	C	T	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:102,116:0.53:218
chr2	73339430	rs4143146	T	G	14042.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr2	73339708	rs1864488	G	A	25157.77	.	AC=2;AF=1.00;AN=2;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,957:1.00:957
chr2	73429742	rs60009779	T	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	73430234	rs13432787	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	73435601	rs17008862	T	C	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:107,113:0.51:220
chr2	73441728	rs1560393	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	73447775	rs2303904	A	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	73448174	rs2288632	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.074;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	73455600	rs11559241	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr2	73456206	rs72905345	A	T	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr2	73456548	rs144403534	A	ATGCCTGCCCACTCCTCGTGTCC	3876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.056;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.491;QD=6.73;ReadPosRankSum=-0.227;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:396,180:0.31:576
chr2	73460293	rs70965722	AGGGCC	A	4437.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	73467676	rs3835072	GAA	G	4138.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:158,114:0.42:272
chr2	73471193	.	G	GT	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=17.724;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.354;QD=2.01;ReadPosRankSum=-1.405;SOR=0.102;set=HC	GT:AD:AF:DP	0/1:114,47:0.29:161
chr2	73475188	rs2231430	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	73476773	rs139858711	GT	G	231.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	73477213	rs41285979	G	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.85;ReadPosRankSum=-0.272;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	73477317	rs72255992	CCT	C	371.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr2	73490412	rs34363861	A	G	5481.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.008;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.83;ReadPosRankSum=-0.876;SOR=0.133;set=HC	GT:AD:AF:DP	1/1:2,228:0.99:230
chr2	73492614	rs526106	A	T	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:197,166:0.46:363
chr2	73493303	rs13021769	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.61;ReadPosRankSum=-0.253;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	73518533	rs2229294	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr2	73518867	rs7558708	G	A	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:148,165:0.53:313
chr2	73520467	rs370494643	C	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr2	73613031	rs61156725	TGGAGGA	T	1562.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr2	73649928	rs1881245	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.623;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:53,42:0.44:95
chr2	73651967	rs3813227	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,41:0.36:115
chr2	73675669	rs2037814	T	G	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:142,109:0.43:251
chr2	73677833	rs6546836	A	G	6548.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:281,310:0.52:591
chr2	73677898	rs6546837	G	C	6998.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:279,325:0.54:604
chr2	73679280	rs6546838	A	G	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:120,146:0.55:266
chr2	73679990	rs6724782	T	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:161,169:0.51:330
chr2	73680399	.	A	T	2461.77	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:149,124:0.45:273
chr2	73680508	rs6546839	G	C	5038.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:235,250:0.52:485
chr2	73716810	rs3820700	G	A	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:160,158:0.50:318
chr2	73717103	rs2017116	G	C	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:257,172:0.40:429
chr2	73717567	rs2056486	G	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:114,104:0.48:218
chr2	73717656	rs10193972	A	G	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:188,165:0.47:353
chr2	73746923	rs11884776	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr2	73761881	rs3738848	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	73829372	rs1052162	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr2	73830581	rs113408397	G	GA	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.380;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	73852019	.	A	G	25	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=48.77;NF=0;NR=4;PP=25;QD=14.9428031368;SC=TTCTGGGAAAAGAAAACCAGA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=4;WE=73852027;WS=73852009;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	73868328	rs13538	A	G	9391.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:449,459:0.51:908
chr2	73899613	rs2421585	T	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	73899955	rs6725284	G	T	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.858;QD=8.02;ReadPosRankSum=1.001;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:178,129:0.42:307
chr2	73900210	rs4637150	A	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr2	73900900	rs10206899	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	73900918	rs35051622	CT	C	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.809;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	73912094	.	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-0.387;QD=3.15;ReadPosRankSum=0.103;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:102,34:0.25:136
chr2	73927931	rs4852974	A	G	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	73994074	rs2567599	G	A	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	74087290	rs1025424	T	C	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:224,202:0.47:426
chr2	74128391	rs1721241	G	C	17006.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr2	74128433	rs1050146	C	T	24168.77	.	AC=2;AF=1.00;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	1/1:0,927:1.00:927
chr2	74128660	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTG	T,TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTG	1544	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=25;MQ=60.71;NF=1,1;NR=19,35;PP=1544,997;QD=77.35;SC=GGGAAGGAAATGTGTGTGTGT;SbPval=0.63;Source=Platypus;TC=20;TCF=1;TCR=19;TR=20,36;WE=74128720;WS=74128650;set=Platypus	GT:AF:DP	0/1:1.00:20
chr2	74142164	rs35892339	GA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.67;ReadPosRankSum=-2.260;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	74146869	rs1721238	G	A	247.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	74153905	rs831526	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	74154160	rs145252858	C	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:197,147:0.43:344
chr2	74159854	rs74544427	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,84:0.50:169
chr2	74185876	rs4777	A	T	4460.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:187,224:0.55:411
chr2	74320751	rs200467099	C	T	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:268,187:0.41:455
chr2	74328031	rs190314140	C	T	9264.77	.	AC=1;AF=0.500;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	0/1:578,470:0.45:1048
chr2	74329087	rs79170439	G	A	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:224,204:0.48:428
chr2	74361828	rs56135321	C	T	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=2.845;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:121,83:0.41:204
chr2	74362063	rs34436360	G	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr2	74362090	rs828879	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	74374884	rs1667605	G	A	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=4.178;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:51,58:0.53:109
chr2	74383911	rs828852	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	74414852	rs76992123	A	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr2	74450125	rs6745054	T	C	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	74450134	.	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.351;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	74453986	rs7565640	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	74454291	rs113170181	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	74460685	rs3796109	C	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	74477427	rs75131120	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	74482892	rs7602215	T	C	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	74489200	rs74505583	T	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	74589330	rs57084028	C	A	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	74589333	rs61601276	C	T	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	74589360	rs60453234	G	A	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	74589984	rs10153548	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	74592937	rs28706943	T	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	74596168	rs3216580	G	GA	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	74596321	rs13429423	T	C	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr2	74596640	rs13429740	T	G	14600.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr2	74596653	rs13416427	G	A	12161.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:1,460:1.00:461
chr2	74597937	rs13420401	G	T	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	74597984	rs13420292	C	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	74601606	rs146589823	CAGG	C	1862.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	74604456	rs72659368	A	C	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	74604673	rs3213672	C	T	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	74604887	rs13388914	T	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	74607517	rs13411165	A	G	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr2	74641353	rs7590337	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	74641624	rs2240444	G	C	14762.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:1,578:1.00:579
chr2	74649920	.	C	CAA	57.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.609;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr2	74649921	rs11685929	C	A	1340.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=1.791;SOR=0.534;set=HC	GT:AD:AF:DP	1/1:3,50:0.94:53
chr2	74682512	rs2268417	C	T	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	74687258	rs113321228	A	ACACATTT	31268.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=1401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.085;QD=27.12;ReadPosRankSum=-0.349;SOR=0.136;set=HC	GT:AD:AF:DP	1/1:2,1151:1.00:1153
chr2	74687550	rs8469	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	74688884	rs13405869	G	A	16537.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr2	74690039	rs2268416	G	A	10542.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr2	74690378	rs1063588	C	T	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	74699778	rs1047911	C	A	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr2	74708995	.	AG	A	20101.73	.	AC=1;AF=0.500;AN=2;DP=1351;set=Intersection	GT:AD:AF:DP	0/1:635,678:0.52:1313
chr2	74710491	rs6707475	C	T	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	74720002	rs4853026	C	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	74725144	rs6546908	T	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	74732415	rs2240443	T	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	74734983	.	TG	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=4.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-1.273;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr2	74746322	rs6546909	A	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	74755778	rs10779958	A	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	74756111	rs3835033	G	GA	4272.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:10,217:0.96:227
chr2	74756176	rs2231250	G	C	9267.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr2	74761422	rs6707302	T	C	14148.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr2	74781871	rs13416172	C	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr2	74782639	rs73949684	C	T	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:131,155:0.54:286
chr2	74789700	rs11126435	A	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	74802728	rs6546912	C	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr2	74803517	rs10170219	G	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	74803763	rs10182717	T	C	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,119:0.53:224
chr2	74884905	rs363713	T	C	5378.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:199,256:0.56:455
chr2	74885090	rs6718857	T	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:68,86:0.56:154
chr2	74901602	rs363608	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	74902228	rs363640	A	C	5102.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:243,252:0.51:495
chr2	74902872	rs363609	A	G	8191.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr2	75061873	rs663504	C	G	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	75104379	rs36066402	G	C	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:214,164:0.43:378
chr2	75104530	rs116187651	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:98,107:0.52:205
chr2	75105798	rs604112	A	G	23306.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,911:1.00:911
chr2	75107246	rs11903758	C	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	75113572	rs2306806	G	A	3231.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:163,170:0.51:333
chr2	75113657	rs2229626	C	T	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:79,97:0.55:176
chr2	75113789	rs2229627	C	G	12555.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr2	75113903	rs17741356	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr2	75115108	rs10194657	A	G	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr2	75116527	rs2229629	G	A	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr2	75116627	rs4853069	C	T	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:5,289:0.98:294
chr2	75186337	rs2287102	A	G	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,113:0.52:217
chr2	75187573	rs3771799	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	75187589	rs371588685	CT	C	2774.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr2	75187793	rs3821312	A	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	75425623	rs2024512	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	75425728	rs6715729	A	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:66,50:0.43:116
chr2	75720664	rs6741778	G	A	5460.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:286,274:0.49:560
chr2	75881828	rs6759555	T	C	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	75897176	rs13429072	C	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	75907351	rs6722682	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr2	75915035	rs1803196	C	T	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr2	75919272	rs142689014	AATAT	A	829.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;QD=39.51;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	75919294	rs116783069	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=43.08;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	75919296	rs111967112	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=45.24;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	75923413	rs7560262	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	75928300	rs6547019	G	T	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	75929238	rs3088180	C	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	75933830	rs6728499	T	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	75937888	rs7559767	G	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr2	79254261	rs452267	T	C	12739.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:258,553:0.68:811
chr2	79255325	rs2290079	G	C	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:88,142:0.62:230
chr2	79255426	rs383969	G	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr2	79312414	rs3739144	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.571;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:184,84:0.31:268
chr2	79313815	rs2073445	G	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,29:0.29:99
chr2	79314081	rs6738657	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:122,64:0.34:186
chr2	79314094	rs6723688	G	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr2	79348129	rs11339710	GA	G	1622.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.357;QD=10.54;ReadPosRankSum=1.609;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:27,127:0.82:154
chr2	79348196	rs2070707	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-0.759;QD=3.25;ReadPosRankSum=-1.468;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr2	79349372	rs283891	C	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	79350347	rs12228	A	G	17192.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:2,654:1.00:656
chr2	79422965	rs1434199	C	G	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr2	79423062	rs149273901	TTTTG	T	2226.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	79750543	rs10205858	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	79878664	rs3739139	A	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:267,123:0.32:390
chr2	79914570	rs35164413	C	CT	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.148;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr2	79971477	rs17017796	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	80085239	rs61754544	G	A	8994.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:216,428:0.66:644
chr2	80097205	rs3755096	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr2	80101321	rs61291641	T	G	11932.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:344,574:0.63:918
chr2	80101372	rs76801084	C	T	5612.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:543,312:0.36:855
chr2	80101515	rs56849709	CA	C,CAA	572.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.499;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.098;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:4,28,14:0.61,0.30:46
chr2	80136656	rs72918655	C	G	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.111;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:188,84:0.31:272
chr2	80529956	rs6733871	T	C	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:233,209:0.47:442
chr2	80772972	rs2276659	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr2	80773272	rs114352445	A	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	80783034	rs2304339	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	80809027	rs17019401	C	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	80835558	.	C	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.43;ReadPosRankSum=-0.230;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	84518481	rs114147154	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	84670435	rs35996428	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr2	84676161	rs111651332	TACAC	T	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	84752630	rs9784108	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	84755996	rs35980296	A	AT	1807.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.880;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.413;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:11,98:0.90:109
chr2	84756049	rs4832089	G	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	84756317	rs140020163	A	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	84756341	rs4832090	T	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	84771480	rs1037863	G	A	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	84774835	rs10171852	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	84800605	rs11891970	C	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	84806553	rs6547569	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	84816015	rs1006244	A	G	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	84816188	rs1006245	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	84834063	rs4276039	T	C	8957.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr2	84851763	rs11126970	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	84852011	rs11676670	C	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	84852228	rs13405314	T	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	84861723	rs7570005	C	T	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	84864263	rs6709276	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	84897517	rs1881095	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	84921433	rs1192295	A	G	10681.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:2,420:1.00:422
chr2	84940477	rs4832108	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	85041268	rs111398828	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	85108252	rs34667238	G	GC	828.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=34.53;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	85360828	.	GGGC	G	2631.73	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=42.45;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr2	85510777	rs7574856	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	85532205	rs6741339	C	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	85549868	rs4240199	A	G	15116.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.99;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	85549868	.	AGGGGAA	GGGGGAA,GGGGGAG	1495	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=26;MQ=59.92;NF=89,42;NR=116,52;PP=1495,1472;QD=7.46229859779;SC=GTTAGGACTTAGGGGAAAAAA;SbPval=0.51;Source=Platypus;TC=205;TCF=89;TCR=116;TR=205,94;WE=85549882;WS=85549858;set=Platypus	GT:AF:DP	0/1:1.00:205
chr2	85549874	rs3637	A	G	4072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.528;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:217,205:0.49:422
chr2	85552186	rs7572750	C	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	85553784	rs1044973	C	T	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	85554885	rs57481159	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr2	85555210	rs56742524	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	85570186	rs4832001	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	85570942	rs9309620	G	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr2	85571710	rs4832171	A	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	85573033	rs908302	G	A	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:179,174:0.49:353
chr2	85590286	rs7564372	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,56:0.44:126
chr2	85617968	rs116056110	C	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,119:0.51:235
chr2	85622059	rs6886	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:111,93:0.46:204
chr2	85662650	rs6547618	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr2	85769246	rs1078005	G	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	85769711	rs1078004	C	G	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:139,145:0.51:284
chr2	85777572	rs17026447	A	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	85777888	rs74505671	GAA	G	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	85778130	rs143538795	G	C	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:147,128:0.47:275
chr2	85780536	rs699664	C	T	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:171,172:0.50:343
chr2	85781318	rs1254896	T	G	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr2	85788175	rs7568458	T	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr2	85788402	rs55829881	AC	A	1894.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr2	85806068	rs3731827	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr2	85807081	.	ATT	A	35.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-1.081;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	85807082	rs1348818	T	A	74.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.236;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=0.266;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	85807084	.	T	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.484;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	85808737	rs1009	A	G	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:241,187:0.44:428
chr2	85811592	rs11311	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=1.301;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	85818797	rs2289976	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr2	85818886	rs14976	C	T	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:241,162:0.40:403
chr2	85820027	rs72843872	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr2	85820047	rs113892156	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	85820301	rs1049363	A	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr2	85823167	rs35880310	TG	T	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	85824084	rs2232748	G	C	10096.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.71;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	85826132	rs1044158	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=0.584;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	85826721	rs11891495	G	A	3225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-2.233;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:199,168:0.46:367
chr2	85827265	rs115884620	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	85828014	rs6733550	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	85838748	rs187547382	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:96,104:0.52:200
chr2	85848747	rs35865728	CT	C	1080.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.862;QD=10.01;ReadPosRankSum=-0.557;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:21,87:0.81:108
chr2	85866577	.	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.646;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr2	85872223	rs116803155	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr2	85875858	rs114410227	T	C	1469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.518;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:88,77:0.47:165
chr2	85890771	rs893159	T	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr2	85890828	rs3024809	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,96:0.47:205
chr2	85892451	rs35049407	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:107,124:0.54:231
chr2	85893616	rs147140768	CTG	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-1.221;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	85921389	rs1866139	G	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	85921635	rs60054012	G	A	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:132,115:0.47:247
chr2	85921938	rs114854610	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	85921992	rs2043760	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	85922121	rs113717357	T	TA	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=23.87;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	85922468	rs6732835	T	C	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:154,153:0.50:307
chr2	85923005	rs116332076	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-2.206;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr2	85923015	rs115691465	C	G	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.462;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr2	85924899	rs1437742	T	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	85924922	rs72925076	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	85925680	rs4240202	T	G	19651.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr2	85925756	rs7908	C	G	16629.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:1,640:1.00:641
chr2	85925848	rs12845	C	G	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	85981761	rs17851881	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:122,110:0.47:232
chr2	85981797	rs75293225	G	A	3818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.406;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:203,188:0.48:391
chr2	86014345	rs736991	G	A	13684.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr2	86090413	rs76262300	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	86107840	rs11127008	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	86107951	rs34410645	GA	G	861.92	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:8,54:0.87:62
chr2	86107987	rs11127009	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	86116168	rs28364795	G	T	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	86116169	rs28364794	A	G	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	86255790	rs35093541	T	C	7087.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:350,356:0.50:706
chr2	86259443	rs2276626	C	T	10172.77	.	AC=1;AF=0.500;AN=2;DB;DP=1178;set=Intersection	GT:AD:AF:DP	0/1:644,530:0.45:1174
chr2	86267586	rs36051710	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:237,213:0.47:450
chr2	86272235	rs7572206	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	86272350	rs61185790	C	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr2	86272758	rs1561328	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr2	86275893	rs115198396	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	86275911	rs115612296	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	86275926	rs149075441	C	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr2	86276315	rs34302587	T	C	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:140,114:0.45:254
chr2	86276395	rs10184159	C	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	86280127	rs188670120	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:140,124:0.47:264
chr2	86292656	rs311563	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:114,80:0.41:194
chr2	86302103	rs3815840	A	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	86304926	rs73947323	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	86304932	rs72166424	GCGCACACACACACACACACACA	G,GCACACACACA	704.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.274;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=41.45;SOR=0.595;set=HC	GT:AD:AF:DP	1/2:1,6,10:0.35,0.59:17
chr2	86305123	rs2288117	T	C	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	86305404	rs35239368	T	C	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:127,156:0.55:283
chr2	86305534	rs74607112	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	86307884	rs3217271	CAG	C	1397.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	86333375	rs13393659	C	T	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:122,88:0.42:210
chr2	86334369	rs13403541	A	G	4580.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:216,228:0.51:444
chr2	86338333	rs113632978	C	CT	131.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	86344237	rs3764948	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.570;QD=7.95;ReadPosRankSum=-2.065;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:51,41:0.45:92
chr2	86344367	rs2059353	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	86346180	rs2303339	G	A	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:108,112:0.51:220
chr2	86346308	rs6715623	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	86355137	rs149406921	T	C	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.608;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:95,106:0.53:201
chr2	86358102	rs77829242	A	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	86360441	rs139812344	GC	G	6139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=1.302;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:231,186:0.45:417
chr2	86363855	rs7558040	G	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	86364353	rs2241434	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr2	86364706	rs56274257	TG	T	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	86371233	rs11845	T	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	86373434	rs6724856	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.588;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	86375065	rs10179466	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	86385668	rs1057893	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	86385812	rs2228352	T	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:136,104:0.43:240
chr2	86385854	rs79906199	T	A	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:124,102:0.45:226
chr2	86385886	rs6739460	A	G	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	86398008	rs11884765	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	86400703	.	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.891;QD=3.12;ReadPosRankSum=-0.986;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	86406556	rs17027011	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr2	86408385	rs6731995	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:109,98:0.47:207
chr2	86420255	rs11897696	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	86422416	rs17551822	T	C	7051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.616;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:328,195:0.37:523
chr2	86422421	rs17551815	T	G	6904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.129;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:334,199:0.37:533
chr2	86434569	rs9309634	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	86437551	rs7565645	T	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=1.053;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:30,46:0.61:76
chr2	86491042	rs143730116	TA	T	3638.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr2	86491334	rs17027112	G	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	86509267	rs1863058	G	A	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,141:0.48:293
chr2	86509388	rs1863059	T	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	86564667	.	G	GCGGCT	947.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr2	86565371	rs6547675	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	86678124	rs57145635	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	86682417	.	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=2.305;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	86683539	.	A	ATTT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.39;ReadPosRankSum=0.328;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	86683642	rs2030259	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	86691250	rs12714187	G	A	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	86707504	rs4832290	T	C	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	86719151	rs11883727	A	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr2	86737433	rs201638147	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chr2	86737649	rs966477	G	A	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	86756209	rs1036940	C	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	86850022	rs396354	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	86947783	rs76239019	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	86947847	.	A	G	92	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=24;MQ=47.88;NF=7;NR=3;PP=92;QD=12.6771212547;SC=ACAAGTTCTCAGGCTACGGGC;SbPval=0.9;Source=Platypus;TC=38;TCF=20;TCR=18;TR=10;WE=86947855;WS=86947837;set=Platypus	GT:AD:AF:DP	0/1:28,10:0.26:38
chr2	86978895	rs4832311	G	T	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	86979093	rs10186663	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr2	86992337	rs3840984	T	TAA	2153.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr2	86998659	rs56328788	CT	C,CTT	1291.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.297;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.901;SOR=0.574;set=HC	GT:AD:AF:DP	1/2:52,90,69:0.43,0.33:211
chr2	87015633	rs71378806	T	TGA	4723.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	87016830	rs115370220	C	T	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=61.47;MQRankSum=2.158;QD=10.43;ReadPosRankSum=-0.260;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:83,90:0.52:173
chr2	87016922	rs142496274	G	GCGCCCC	8164.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	87017034	rs2944251	C	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr2	87017069	rs2944250	C	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	87017843	.	G	GCGCCCCC	1435.73	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr2	87017981	.	GCT	G	4616.73	.	AC=1;AF=0.500;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	0/1:128,120:0.48:248
chr2	87018090	rs190362172	C	T	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:174,133:0.43:307
chr2	87042866	rs56761572	T	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr2	87048677	rs13024609	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	87048702	rs13001400	T	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	87049281	rs79219669	G	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	87060359	rs62146088	C	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	87069379	rs4322832	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.193;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=0.506;QD=8.02;ReadPosRankSum=-1.241;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	87069431	rs4514875	C	T	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-3.339;QD=7.77;ReadPosRankSum=2.995;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:57,41:0.42:98
chr2	87073743	rs4971887	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.81;QD=29.08;SOR=1.965;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	87085598	rs28727404	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.06;QD=26.73;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	87088964	rs62146888	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	87092750	rs374275493	C	CAA	292.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.29;MQRankSum=-2.634;QD=14.64;ReadPosRankSum=-0.642;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	87092865	rs10195435	C	T	2246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.288;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;MQRankSum=-1.770;QD=24.42;ReadPosRankSum=-0.122;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,91:0.99:92
chr2	87105775	rs138608684	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	87105886	rs149291892	T	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	87106108	rs58443432	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=29.21;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	87131182	.	A	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-1.270;QD=2.43;ReadPosRankSum=-0.132;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr2	87356024	rs3101261	C	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.445;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-3.871;QD=2.26;ReadPosRankSum=1.477;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:81,14:0.15:95
chr2	87356038	rs201869954	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.364;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-3.048;QD=3.95;ReadPosRankSum=0.355;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr2	88272998	.	C	A	37	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=26;MQ=45.12;NF=0;NR=4;PP=37;QD=17.9428031368;SC=ACATCCCATACGTAGTTTTGA;SbPval=1.0;Source=Platypus;TC=18;TCF=4;TCR=14;TR=4;WE=88273006;WS=88272988;set=Platypus	GT:AD:AF:DP	1/0:14,4:0.22:18
chr2	88328208	rs12328217	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=22.37;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	88381981	rs115609521	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	88396348	rs62156964	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	88396358	rs62156965	C	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	88402748	rs748226	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	88406104	rs111282413	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	88409717	rs200741830	T	TGA	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=29.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	88409719	.	A	AGAGTGTGTGTGT,AGAGTGTGTGTGTGT	133	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5342,0.4658;HP=2;HapScore=2;MGOF=56;MMLQ=26;MQ=58.07;NF=9,9;NR=2,2;PP=133,7;QD=12.3636363636;SC=TTGATGAATGAGTGTGTGTGT;SbPval=0.61;Source=Platypus;TC=11;TCF=9;TCR=2;TR=11,11;WE=88409727;WS=88409709;set=Platypus	GT:AF:DP	0/1:1.00:11
chr2	88409753	.	T	G	352	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=2;MGOF=76;MMLQ=26;MQ=58.95;NF=16;NR=12;PP=352;QD=13.813257591;SC=TGTGTGTGTGTATTCTGAGGG;SbPval=0.57;Source=Platypus;TC=28;TCF=16;TCR=12;TR=28;WE=88409761;WS=88409743;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	88409753	.	T	TGTGTGTGTGG	780.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=39.04;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	88410102	rs2289497	C	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	88411605	rs2919865	A	T	11166.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	88411793	rs2970888	C	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	88470966	rs10182147	G	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	88472791	rs4129190	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	88474370	rs2139100	A	G	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	88482258	rs35051888	G	A	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:222,203:0.48:425
chr2	88485149	rs76063088	G	A	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr2	88485392	rs1878810	G	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	88748390	rs4972212	A	T	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr2	88751751	rs11456039	A	AG	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	88825315	rs34809896	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.314;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	88858366	rs76949751	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-2.340;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr2	88861757	rs1800980	T	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr2	88870632	rs4972221	A	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	88874891	rs1805165	C	A	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	88895123	rs13045	T	C	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	88895351	rs7571971	T	C	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	88926729	rs72416210	CCAGCAG	CCAG,C	3557.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	1/1:1.00:80
chr2	88999476	rs1158603	G	A	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	89156948	rs232230	C	G	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:207,177:0.46:384
chr2	89157282	rs232229	T	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr2	89160889	rs232224	G	T	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:239,233:0.49:472
chr2	89161322	rs232223	C	G	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:191,230:0.55:421
chr2	89161547	rs232222	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr2	89459173	rs7606884	C	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr2	89512854	rs77255451	A	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.631;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=22.698;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-6.558;QD=0.51;ReadPosRankSum=-1.123;SOR=4.271;set=HC	GT:AD:AF:DP	0/1:120,15:0.11:135
chr2	89512889	rs149883808	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.767;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=54.039;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-7.503;QD=2.61;ReadPosRankSum=-3.778;SOR=4.378;set=HC	GT:AD:AF:DP	0/1:197,45:0.19:242
chr2	89512932	rs185552028	G	A	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:175,289:0.62:464
chr2	89513004	rs141893646	A	G	6367.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:414,340:0.45:754
chr2	89890830	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr2	90007670	rs2847917	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	90008208	rs138920656	T	G	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	90008287	rs147071425	A	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr2	90043509	rs201839533	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.67;QD=23.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	90108416	rs859744	G	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	90108778	rs859745	G	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr2	90229260	rs842173	T	C	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:58,88:0.60:146
chr2	90229265	rs145538558	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:92,60:0.39:152
chr2	90249415	rs111538912	A	G	3480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-3.336;QD=4.62;ReadPosRankSum=1.185;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:535,218:0.29:753
chr2	90249468	rs373008692	C	T	2639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=14.560;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-4.129;QD=9.17;ReadPosRankSum=-1.085;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:203,85:0.30:288
chr2	90249478	rs202170599	T	C	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=16.586;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.283;QD=9.66;ReadPosRankSum=-1.693;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:182,71:0.28:253
chr2	90249497	rs199897956	T	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=10.389;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.421;QD=3.97;ReadPosRankSum=-4.182;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:127,44:0.26:171
chr2	90259848	rs842155	T	G	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:154,132:0.46:286
chr2	90259965	rs842156	T	C	5538.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:285,273:0.49:558
chr2	91766609	rs56138505	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=1009;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.16;MQRankSum=-2.473;QD=0.38;ReadPosRankSum=-1.283;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:868,137:0.14:1005
chr2	91766685	rs2258279	GA	TG	3244.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;JOINED;set=Intersection	GT:AD:AF:DP	0/1:142,95:0.40:237
chr2	91767199	rs2558010	A	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	91809227	rs2536993	A	G	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:256,199:0.44:455
chr2	91809324	rs2536994	C	T	7535.77	.	AC=1;AF=0.500;AN=2;DB;DP=1350;set=Intersection	GT:AD:AF:DP	0/1:907,438:0.33:1345
chr2	91809385	rs55812636	C	G	7088.77	.	AC=1;AF=0.500;AN=2;DB;DP=1210;set=Intersection	GT:AD:AF:DP	0/1:804,403:0.33:1207
chr2	91809404	rs55918232	G	C	7037.77	.	AC=1;AF=0.500;AN=2;DB;DP=1073;set=Intersection	GT:AD:AF:DP	0/1:702,370:0.35:1072
chr2	91809456	rs2191971	T	G	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:435,138:0.24:573
chr2	91809468	.	C	CTAA	5855.73	.	AC=1;AF=0.500;AN=2;DP=509;set=Intersection	GT:AD:AF:DP	0/1:340,165:0.33:505
chr2	91809470	rs2386154	G	A	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-16.006;QD=11.97;ReadPosRankSum=8.039;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:325,165:0.34:490
chr2	91809472	.	G	GTGACTAACAA	5946.73	.	AC=1;AF=0.500;AN=2;DP=488;set=Intersection	GT:AD:AF:DP	0/1:322,165:0.34:487
chr2	91925022	rs28577290	C	A	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=19.772;MLEAC=1;MLEAF=0.500;MQ=46.35;MQRankSum=-4.152;QD=8.46;ReadPosRankSum=5.614;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:75,59:0.44:134
chr2	91933136	.	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DP=232;set=Intersection	GT:AD:AF:DP	0/1:116,104:0.47:220
chr2	91936000	rs181005306	G	A	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:128,130:0.50:258
chr2	95537245	rs4854234	C	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr2	95537501	rs11889464	C	T	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:121,183:0.60:304
chr2	95537572	rs4854235	C	T	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:146,205:0.58:351
chr2	95537622	rs11164112	A	G	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:123,207:0.63:330
chr2	95537871	rs11483811	G	GC	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.778;QD=5.99;ReadPosRankSum=0.804;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	95830652	rs6719142	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	95830737	rs11395151	C	CA	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	95830800	.	GAAGT	G	1975.73	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr2	95846158	rs3112230	T	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	95847040	rs10578519	TGCG	T	9016.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	95944902	rs61086044	A	AC	1722.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	95945568	rs7585914	G	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	95945830	rs7586229	G	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	95947085	rs12992066	A	G	12529.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr2	95952177	rs7602232	C	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	95963242	rs2248415	C	G	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=5.259;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	96012907	rs7602807	C	G	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr2	96048862	rs58372613	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	96049917	.	T	TACAC	87.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.43;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	96049957	.	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.62;ReadPosRankSum=-2.093;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	96076409	rs6577014	C	T	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	96457890	.	C	T	555.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,38:0.30:128
chr2	96601240	rs199988716	G	A	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=-11.261;QD=8.02;ReadPosRankSum=-2.108;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:112,85:0.43:197
chr2	96601296	rs145876416	A	ATGATTAAT	4415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=47.03;MQRankSum=-12.993;QD=17.88;ReadPosRankSum=4.207;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:134,113:0.46:247
chr2	96601312	rs201144574	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:179,77:0.30:256
chr2	96601345	rs149389865	T	C	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-10.694;QD=8.96;ReadPosRankSum=0.698;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:91,81:0.47:172
chr2	96601364	rs148485539	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-7.157;QD=10.11;ReadPosRankSum=-0.421;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:59,56:0.49:115
chr2	96604473	rs75003856	T	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr2	96604516	rs62154560	C	T	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:69,133:0.66:202
chr2	96604591	rs62154561	A	G	8197.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:227,369:0.62:596
chr2	96604632	rs62154562	A	T	5509.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:201,267:0.57:468
chr2	96604679	rs62154563	C	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chr2	96604730	rs113311459	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.087;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=11.309;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=-3.763;QD=8.62;ReadPosRankSum=1.368;SOR=3.279;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	96606944	rs78739183	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-5.015;QD=8.08;ReadPosRankSum=0.627;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	96606985	rs79451673	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-4.666;QD=2.84;ReadPosRankSum=-2.080;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr2	96606998	rs201633069	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-3.797;QD=1.72;ReadPosRankSum=-1.831;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,3:0.10:29
chr2	96610329	rs201777230	G	C	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-14.531;QD=4.15;ReadPosRankSum=-4.653;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:172,67:0.28:239
chr2	96610395	rs147285461	C	CA	2994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-18.988;QD=6.17;ReadPosRankSum=7.737;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:324,161:0.33:485
chr2	96610399	rs116594293	C	A	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.531;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-19.243;QD=11.79;ReadPosRankSum=7.419;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:328,163:0.33:491
chr2	96610410	rs77220524	T	A	5849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.708;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-19.353;QD=12.14;ReadPosRankSum=4.355;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:319,163:0.34:482
chr2	96610413	rs74491979	C	T	5837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.883;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-19.191;QD=12.26;ReadPosRankSum=3.116;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:313,163:0.34:476
chr2	96610420	rs78473403	G	T	5852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-19.299;QD=12.19;ReadPosRankSum=1.029;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:317,163:0.34:480
chr2	96610479	rs200773992	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-11.309;QD=1.01;ReadPosRankSum=-6.680;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:148,28:0.16:176
chr2	96610787	rs112708872	C	CA	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.272;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=32.558;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-10.593;QD=8.58;ReadPosRankSum=-4.171;SOR=4.199;set=HC	GT:AD:AF:DP	0/1:94,27:0.22:121
chr2	96610836	rs11893977	T	C	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:223,263:0.54:486
chr2	96610899	rs62154593	T	C	26004.77	.	AC=1;AF=0.500;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	0/1:290,645:0.69:935
chr2	96610921	rs62154594	T	G	26639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-8.587;QD=29.73;ReadPosRankSum=6.041;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:241,655:0.73:896
chr2	96610921	.	TTC	GTC,GTG	2502	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=51;MMLQ=23;MQ=56.84;NF=181,74;NR=178,71;PP=2502,1335;QD=20;SC=TTCTGAAATATTCTAGAAGAA;SbPval=0.43;Source=Platypus;TC=464;TCF=226;TCR=238;TR=359,145;WE=96610931;WS=96610911;set=Platypus	GT:AF:DP	0/1:0.77:464
chr2	96610923	rs75080810	C	G	4260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-3.774;QD=4.83;ReadPosRankSum=1.425;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:603,279:0.32:882
chr2	96610952	rs62154595	T	C	11965.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:151,549:0.78:700
chr2	96611013	rs202100353	A	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-2.368;QD=2.06;ReadPosRankSum=0.248;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:145,31:0.18:176
chr2	96611018	rs62154596	G	A	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:38,112:0.75:150
chr2	96616313	.	A	ATT	49.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:13,3:0.19:16
chr2	96616348	rs62154609	C	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr2	96616353	rs150793442	GT	G	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.360;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-5.049;QD=0.75;ReadPosRankSum=0.834;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr2	96616355	rs62154610	T	C	45.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-5.110;QD=0.85;ReadPosRankSum=0.936;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:48,6:0.11:54
chr2	96616378	rs62154611	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,38:0.34:111
chr2	96616442	rs74960926	C	A	2783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-11.967;QD=11.70;ReadPosRankSum=3.223;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:156,82:0.34:238
chr2	96616448	rs76503749	G	T	2712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.339;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-11.482;QD=11.40;ReadPosRankSum=4.046;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:159,79:0.33:238
chr2	96616485	rs78218362	C	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:150,67:0.31:217
chr2	96616501	.	C	CAA	2072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-5.711;QD=9.92;ReadPosRankSum=-1.692;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:145,64:0.31:209
chr2	96616505	rs373114066	AGC	A	1932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-5.282;QD=10.17;ReadPosRankSum=-2.101;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:136,54:0.28:190
chr2	96616532	rs112676430	T	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:98,26:0.21:124
chr2	96616622	.	C	T	61	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=2;MGOF=34;MMLQ=26;MQ=44.53;NF=5;NR=2;PP=61;QD=13.6816017925;SC=TTCCTATAATCCCAGCTACTC;SbPval=0.16;Source=Platypus;TC=27;TCF=12;TCR=15;TR=7;WE=96616630;WS=96616612;set=Platypus	GT:AD:AF:DP	0/1:20,7:0.26:27
chr2	96616654	rs75283408	C	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	96616667	rs77249402	A	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	96616690	rs111409549	T	C	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=51.19;MQRankSum=-0.771;QD=31.61;ReadPosRankSum=3.164;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr2	96616947	rs74369410	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=6.296;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-5.709;QD=10.08;ReadPosRankSum=-0.641;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	96616951	rs74904196	A	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=-4.564;QD=11.79;ReadPosRankSum=-0.886;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	96616957	rs76255864	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.590;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=52.26;MQRankSum=-4.675;QD=11.28;ReadPosRankSum=-0.958;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	96616967	rs77784489	G	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=52.67;MQRankSum=-5.396;QD=12.29;ReadPosRankSum=-1.013;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr2	96616976	rs76077075	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.91;MQRankSum=-5.838;QD=11.69;ReadPosRankSum=0.216;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr2	96616979	rs80105408	G	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.02;MQRankSum=-5.404;QD=13.35;ReadPosRankSum=-0.290;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr2	96616997	rs74701498	T	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr2	96617023	rs78346055	C	A	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-6.210;QD=10.96;ReadPosRankSum=2.092;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:93,49:0.35:142
chr2	96617025	rs72492186	C	A	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.693;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-5.854;QD=12.48;ReadPosRankSum=2.474;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:95,49:0.34:144
chr2	96617029	.	G	GA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=2.277;QD=0.78;ReadPosRankSum=0.853;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr2	96617039	rs74263747	A	C	1542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-5.622;QD=9.52;ReadPosRankSum=1.084;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:106,56:0.35:162
chr2	96617047	.	A	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-3.820;QD=1.50;ReadPosRankSum=1.258;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:161,22:0.12:183
chr2	96617069	rs72935831	A	G	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:147,73:0.33:220
chr2	96617090	rs72935833	A	G	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:173,71:0.29:244
chr2	96617106	rs76943414	A	C	2207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-6.929;QD=9.77;ReadPosRankSum=-1.851;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:161,65:0.29:226
chr2	96617111	rs76474100	G	A	2207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-6.531;QD=9.90;ReadPosRankSum=-2.232;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:159,64:0.29:223
chr2	96617113	rs80297803	G	A	2168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-6.362;QD=9.68;ReadPosRankSum=-1.760;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:162,62:0.28:224
chr2	96617125	rs75585230	T	C	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-5.645;QD=9.58;ReadPosRankSum=-0.645;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:154,47:0.23:201
chr2	96617132	rs75695780	T	C	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-5.794;QD=7.11;ReadPosRankSum=-0.054;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:149,42:0.22:191
chr2	96617155	rs76752473	A	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-5.747;QD=5.28;ReadPosRankSum=0.064;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:120,28:0.19:148
chr2	96617190	.	A	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-4.029;QD=0.76;ReadPosRankSum=-1.761;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:69,7:0.09:76
chr2	96617194	rs75924615	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:63,7:0.10:70
chr2	96617209	.	G	T	120	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=2;MGOF=51;MMLQ=27;MQ=54.58;NF=2;NR=9;PP=120;QD=14.0701102316;SC=GTTAAAATAAGGATAATACCC;SbPval=0.94;Source=Platypus;TC=46;TCF=17;TCR=29;TR=11;WE=96617217;WS=96617199;set=Platypus	GT:AD:AF:DP	0/1:35,11:0.24:46
chr2	96619612	.	C	T	188	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=43.13;NF=13;NR=1;PP=188;QD=15.9122294677;SC=TAGACAACTGCTAAGTTTTAG;SbPval=0.76;Source=Platypus;TC=50;TCF=45;TCR=5;TR=14;WE=96619620;WS=96619602;set=Platypus	GT:AD:AF:DP	0/1:36,14:0.28:50
chr2	96619641	rs200910276	A	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=13.169;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-7.514;QD=5.95;ReadPosRankSum=-1.945;SOR=2.556;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr2	96619642	rs201891130	A	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.743;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=13.169;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-7.514;QD=5.95;ReadPosRankSum=-1.916;SOR=2.556;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr2	96619687	rs199947548	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=-6.621;QD=0.60;ReadPosRankSum=-1.523;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:341,54:0.14:395
chr2	96619688	rs74946480	T	G	4013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=4.485;MLEAC=1;MLEAF=0.500;MQ=53.44;MQRankSum=-12.968;QD=10.03;ReadPosRankSum=-2.914;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:234,166:0.41:400
chr2	96619734	rs62154618	C	T	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-16.478;QD=9.00;ReadPosRankSum=-1.567;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:285,260:0.48:545
chr2	96619774	rs77522461	G	A	3688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=-16.767;QD=9.34;ReadPosRankSum=6.463;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:208,187:0.47:395
chr2	96619799	rs145806545	A	C	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:142,177:0.55:319
chr2	96619831	rs76870447	T	C	2996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.245;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-10.391;QD=19.33;ReadPosRankSum=0.847;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:61,94:0.61:155
chr2	96619832	rs79037822	A	G	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.108;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-10.022;QD=19.96;ReadPosRankSum=0.902;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:58,67:0.54:125
chr2	96619837	rs77007933	CA	GC	3348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.867;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=-8.736;QD=25.96;ReadPosRankSum=0.505;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:48,81:0.63:129
chr2	96619849	rs201387352	A	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=0.011;QD=3.69;ReadPosRankSum=0.831;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr2	96619853	rs201388512	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.525;MLEAC=1;MLEAF=0.500;MQ=53.19;MQRankSum=-5.157;QD=5.58;ReadPosRankSum=-1.266;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:55,22:0.29:77
chr2	96652816	rs200039497	CAA	C	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.71;QD=36.42;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	96780716	rs2229169	T	G	19405.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr2	96780986	rs29000568	C	CTCCTCCTCT	19815.73	.	AC=2;AF=1.00;AN=2;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=43.17;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:1,458:1.00:459
chr2	96781986	rs3111873	G	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	96795857	rs749458	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	96804363	.	T	C	269	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=53;MMLQ=27;MQ=56.02;NF=2;NR=16;PP=269;QD=16.8761784748;SC=GCCCCAACCATCTCCACCTGC;SbPval=0.95;Source=Platypus;TC=51;TCF=13;TCR=38;TR=18;WE=96804371;WS=96804353;set=Platypus	GT:AD:AF:DP	1/0:33,18:0.35:51
chr2	96852842	.	G	GA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.428;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr2	96956315	rs772176	T	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	96991492	rs772174	A	G	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:212,131:0.38:343
chr2	97001505	rs182260239	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.717;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:99,30:0.23:129
chr2	97274188	rs7570831	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.852;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr2	97313451	rs60378028	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,57:0.41:138
chr2	97315570	rs17685664	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	97319244	rs115401742	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.213;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	97319534	rs17685766	G	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.80;ReadPosRankSum=-0.938;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	97349953	rs80008347	A	G	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:158,107:0.40:265
chr2	97351840	rs7599598	A	G	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,286:0.99:288
chr2	97353460	rs138874749	G	GGGGAA	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:51,12:0.19:63
chr2	97357756	rs368566816	CG	C	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.230;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr2	97359236	rs62156207	C	A	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.845;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:128,50:0.28:178
chr2	97359364	rs61750875	A	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:341,142:0.29:483
chr2	97359539	rs77374892	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	97400324	rs6727384	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:119,74:0.38:193
chr2	97405866	rs6751132	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr2	97463095	rs1318597	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr2	97464936	rs36121810	G	A	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:178,113:0.39:291
chr2	97493877	rs1320149	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	97498657	rs1047634	C	T	8765.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	97504087	.	A	C	3000.77	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:100,148:0.60:248
chr2	97504138	rs76481457	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:101,80:0.44:181
chr2	97507727	rs1320146	T	C	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	97508082	rs58147284	G	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	97508320	rs6576986	G	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	97509489	rs79504434	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	97542693	rs114002042	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	97544089	rs6750988	G	C	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.949;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:163,50:0.23:213
chr2	97568453	rs11888101	A	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	97587049	rs34895357	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	97595109	rs6725927	T	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	97613616	rs1624844	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	97613748	rs1623881	C	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	97617140	rs1257019	T	C	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	97617227	rs1257018	A	G	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	97637516	rs6714860	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	97637905	rs6715329	T	C	7236.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	97638038	rs1730120	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	97643684	rs6576998	G	A	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,96:0.66:145
chr2	97749874	rs58875686	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:94,161:0.63:255
chr2	97779372	.	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-3.316;QD=8.18;ReadPosRankSum=0.639;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr2	97779382	rs1814507	G	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-2.929;QD=8.02;ReadPosRankSum=-0.561;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr2	97814956	rs4386368	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr2	97817469	rs62153866	T	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	97817511	rs62153867	T	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=41.94;MQRankSum=-2.097;QD=11.70;ReadPosRankSum=-0.066;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	97817563	rs112026456	C	CA	211.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.018;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=12.711;MLEAC=1;MLEAF=0.500;MQ=40.76;MQRankSum=-3.923;QD=9.62;ReadPosRankSum=3.038;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	97817564	rs33971912	C	T,CT	740.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=40.76;QD=33.67;SOR=1.931;set=HC	GT:AD:AF:DP	1/2:0,7,15:0.32,0.68:22
chr2	97817578	rs113800206	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=49.58;MQRankSum=-4.278;QD=3.67;ReadPosRankSum=2.818;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr2	97817726	.	G	GT	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-0.086;QD=1.62;ReadPosRankSum=-1.205;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:95,28:0.23:123
chr2	97818101	.	T	G	508	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=4;MGOF=32;MMLQ=27;MQ=46.08;NF=10;NR=2;PP=508;QD=45.2309343789;SC=TCAAACTCCTTGGCTTCTCAA;SbPval=0.84;Source=Platypus;TC=27;TCF=20;TCR=7;TR=12;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:15,12:0.44:27
chr2	97818114	.	G	T	508	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=4;MGOF=32;MMLQ=27;MQ=45.46;NF=12;NR=3;PP=508;QD=36.1847475031;SC=CTTCTCAAGTGATACTTCTGC;SbPval=0.87;Source=Platypus;TC=32;TCF=22;TCR=10;TR=15;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:17,15:0.47:32
chr2	97818146	rs145799985	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr2	97818161	rs74715701	C	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.044;MLEAC=1;MLEAF=0.500;MQ=48.70;MQRankSum=-6.750;QD=10.27;ReadPosRankSum=-0.600;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr2	97818169	rs76008235	C	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.091;MLEAC=1;MLEAF=0.500;MQ=48.60;MQRankSum=-6.457;QD=9.50;ReadPosRankSum=1.134;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr2	97818188	rs141129874	T	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=12.125;MLEAC=1;MLEAF=0.500;MQ=47.15;MQRankSum=-6.740;QD=12.32;ReadPosRankSum=1.538;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr2	97818192	rs202154783	A	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=12.198;MLEAC=1;MLEAF=0.500;MQ=47.60;MQRankSum=-6.814;QD=11.78;ReadPosRankSum=2.204;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:53,27:0.34:80
chr2	97818197	rs200340181	G	T	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=12.064;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-6.856;QD=11.46;ReadPosRankSum=2.640;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr2	97818236	rs112647905	A	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr2	97818260	.	GGC	G	811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=7.466;MLEAC=1;MLEAF=0.500;MQ=51.92;MQRankSum=-7.294;QD=7.66;ReadPosRankSum=0.141;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr2	97818264	.	G	GTT	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=13.839;MLEAC=1;MLEAF=0.500;MQ=52.10;MQRankSum=-7.096;QD=7.45;ReadPosRankSum=0.297;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:79,25:0.24:104
chr2	97818283	rs112336445	G	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=9.755;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-6.420;QD=4.83;ReadPosRankSum=-1.336;SOR=1.958;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr2	97827781	.	CTGAT	C	43.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:15,3:0.17:18
chr2	97827787	rs113653147	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-0.598;QD=17.93;ReadPosRankSum=-0.433;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	97827800	rs111338734	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	97827839	rs199729690	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	97828929	rs79735975	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr2	97828982	rs62153884	C	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=-1.842;QD=14.25;ReadPosRankSum=-0.992;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	97829003	rs145086333	CAAAAATAA	C	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.842;MLEAC=1;MLEAF=0.500;MQ=48.14;MQRankSum=-3.975;QD=19.11;ReadPosRankSum=2.250;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	97829029	rs146874874	G	A	855.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=50.17;MQRankSum=-5.576;QD=13.37;ReadPosRankSum=5.001;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr2	97829030	rs140945055	T	G	855.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=-5.637;QD=13.17;ReadPosRankSum=5.208;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr2	97830053	rs112213180	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.812;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-2.382;QD=1.16;ReadPosRankSum=1.913;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	97830104	rs62153886	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-8.814;QD=1.27;ReadPosRankSum=0.939;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:105,24:0.19:129
chr2	97833193	rs75122869	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	97833215	rs146634230	T	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-4.032;QD=21.58;ReadPosRankSum=-0.050;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	97833217	rs150423357	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-4.032;QD=21.58;ReadPosRankSum=-0.076;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	97833342	rs5008284	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=11.724;MLEAC=1;MLEAF=0.500;MQ=45.93;MQRankSum=-4.902;QD=5.06;ReadPosRankSum=-0.509;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:63,28:0.31:91
chr2	97833361	rs1358633	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=45.95;MQRankSum=-6.089;QD=1.78;ReadPosRankSum=-2.543;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:80,19:0.19:99
chr2	97833466	rs112133169	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=20.141;MLEAC=1;MLEAF=0.500;MQ=46.15;MQRankSum=-6.253;QD=0.90;ReadPosRankSum=-2.838;SOR=2.831;set=HC	GT:AD:AF:DP	0/1:109,18:0.14:127
chr2	97833553	rs76811792	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.69;MQRankSum=-1.763;QD=11.69;ReadPosRankSum=0.080;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr2	97833567	rs76160111	A	G	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=-1.763;QD=20.48;ReadPosRankSum=1.534;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr2	97833569	rs78400826	C	T	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=-1.763;QD=20.48;ReadPosRankSum=1.638;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr2	97833583	rs72945197	C	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=51.78;MQRankSum=-2.419;QD=11.72;ReadPosRankSum=0.755;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr2	97851326	.	G	GC	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=10.818;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-7.377;QD=1.14;ReadPosRankSum=2.878;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:50,6:0.11:56
chr2	97851328	.	G	GGT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=10.818;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-7.377;QD=1.14;ReadPosRankSum=2.539;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:50,6:0.11:56
chr2	97851335	rs74835904	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=13.774;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-6.507;QD=2.43;ReadPosRankSum=1.385;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr2	97851345	rs13417266	A	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=23.075;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-5.306;QD=4.86;ReadPosRankSum=-0.216;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr2	97877292	rs10171441	C	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:8,49:0.86:57
chr2	97877399	rs10186233	T	C	7014.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:92,322:0.78:414
chr2	97877478	rs10194525	G	A	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:287,165:0.37:452
chr2	97877528	rs10183746	A	T	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.026;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:135,75:0.36:210
chr2	97877538	rs57165610	A	C	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-1.758;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:102,66:0.39:168
chr2	97881267	rs6756986	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:158,85:0.35:243
chr2	98192743	.	A	AAC	58	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=4;MGOF=0;MMLQ=27;MQ=51.52;NF=2;NR=0;PP=58;QD=63.9550042192;SC=GTACAATTTAAAGTGATTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=2;WE=98192757;WS=98192733;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr2	98192749	rs55777246	T	C	37.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,2:0.25:8
chr2	98205924	rs74177639	C	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	98206188	rs1868445	C	G	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:71,139:0.66:210
chr2	98275474	rs189801973	G	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:56,113:0.67:169
chr2	98350101	rs56081234	A	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr2	98376989	rs3214760	TA	T	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	98377034	rs73959805	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr2	98377512	rs2044458	A	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	98409565	rs13032265	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	98413781	rs2305143	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=1.085;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	98449796	rs6721250	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	98525107	rs1317178	T	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr2	98611833	rs2279825	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	98611994	rs2279824	G	T	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.344;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:18,53:0.75:71
chr2	98779418	rs77092382	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,65:0.59:111
chr2	98779624	rs148830268	ATG	A	687.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr2	98795873	rs11419620	T	TG	8243.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr2	98804314	rs1466156	G	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	98809288	rs7557100	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr2	98810772	rs6721097	C	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.89;ReadPosRankSum=0.301;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	98811075	rs7579916	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	98833445	rs139373261	A	ACCC	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=35.69;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	98833449	rs62156666	G	C,GC	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.67;SOR=3.611;set=HC	GT:AD:AF:DP	1/2:0,8,11:0.42,0.58:19
chr2	98844575	rs7606220	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	98844674	rs7601049	C	G	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	98853173	rs11889349	G	A	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr2	98862097	rs4851121	A	G	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	98872662	rs113487988	C	CT	604.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=1.741;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr2	98928494	rs7587534	G	A	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	98994414	rs937725	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	98999767	rs7562788	G	T	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:92,188:0.67:280
chr2	99168953	rs1181562	T	C	94.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	99232873	rs6711099	T	C	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=1.688;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:264,141:0.35:405
chr2	99234586	rs373790267	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.471;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr2	99234589	rs140200187	T	TA	843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.411;QD=9.93;ReadPosRankSum=-0.329;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:33,52:0.61:85
chr2	99251482	rs3731655	G	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	99272057	rs3754870	T	C	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	99274653	rs2271670	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.960;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr2	99291710	rs6743826	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-0.484;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	99410968	rs138898823	G	C	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr2	99412654	rs73962467	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:147,77:0.34:224
chr2	99439720	.	G	A	426.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	99449174	rs2280256	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	99636718	rs184119945	T	G	436.28	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr2	99721804	.	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.192;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr2	99725223	rs6542864	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=0.342;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	99725479	rs11396964	A	AT	429.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr2	99726043	rs6733624	A	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	99743419	rs13008171	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.42;ReadPosRankSum=0.210;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	99757696	rs76474684	T	C	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-0.069;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:337,162:0.32:499
chr2	99771533	rs2516834	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:164,92:0.36:256
chr2	99771581	rs56824332	C	T	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.161;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr2	99771590	rs2632260	G	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-0.413;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr2	99778985	rs2632277	T	C	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:227,119:0.34:346
chr2	99779131	rs2516835	T	C	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:222,135:0.38:357
chr2	99802820	rs6757661	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr2	99804642	rs10865030	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	99811894	rs7605843	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	99812070	rs1044575	G	A	5314.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=3.420;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.049;QD=25.19;ReadPosRankSum=-0.670;SOR=0.537;set=HC	GT:AD:AF:DP	1/1:1,210:1.00:211
chr2	99812108	rs7572157	T	C	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.931;QD=14.19;ReadPosRankSum=-1.189;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:31,70:0.69:101
chr2	99859863	rs17760953	G	A	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.014;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:171,83:0.33:254
chr2	99859954	rs374944243	CAGATAGAT	C,CAGATAGATAGAT	819.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=76;set=Intersection	GT:AF:DP	1/2:0.43,0.52:23
chr2	99918077	rs74177686	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-3.195;QD=5.65;ReadPosRankSum=1.531;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	99923088	rs13003899	T	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-2.450;QD=5.85;ReadPosRankSum=-1.242;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	99938565	rs11542367	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	99938942	rs12464785	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	99939031	rs17022564	A	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	99944254	.	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.513;QD=2.80;ReadPosRankSum=0.556;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	99954636	rs11326784	GT	G	278.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	99976564	rs3828162	A	G	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	99992822	rs7558074	A	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	99995458	.	ATT	A,AT	1373.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.038;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;MQRankSum=1.019;QD=12.16;ReadPosRankSum=0.764;SOR=0.981;set=HC	GT:AD:AF:DP	1/2:18,33,62:0.29,0.55:113
chr2	99995804	rs1376443	T	C	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	99998561	rs2290256	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	100006620	rs10187843	G	T	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	100006890	rs35228031	G	GT	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.733;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr2	100017868	rs3087387	A	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	100019496	rs2305354	A	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	100019612	rs3087397	TG	T	1601.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	100021184	rs2290261	A	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	100022270	rs1053544	G	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	100022772	rs717454	T	C	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr2	100029406	rs143279516	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr2	100055506	rs3087386	A	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	100058870	rs3087403	C	T	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	100068069	rs4851206	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	100081323	rs28369943	C	T	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr2	100081561	rs28369942	A	AAAGTC	1102.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	100176775	rs13008878	A	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr2	100209626	rs143390383	GC	G	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	100288931	rs4851222	G	A	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	100343557	rs4851223	C	T	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	100454072	rs5832886	C	CT	2165.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:153,72:0.32:225
chr2	100721050	rs13421952	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	100910578	rs4850925	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	100915629	rs4851286	T	C	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	100915772	rs4851287	A	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	100916051	rs2033749	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	100916306	rs2033748	A	G	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	100986859	rs58876304	A	G	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:68,148:0.69:216
chr2	100986964	rs1437971	A	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.29;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	100986964	.	AAC	CAC,CAG	329	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=27;MQ=60.0;NF=10,7;NR=22,17;PP=47,329;QD=2.5553503921;SC=GCACTGGGCAAACTTCTGAAC;SbPval=0.55;Source=Platypus;TC=32;TCF=10;TCR=22;TR=32,24;WE=100986974;WS=100986954;set=Platypus	GT:AF:DP	0/1:1.00:32
chr2	100986966	rs60131548	C	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=0.348;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr2	101010082	rs3748930	G	C	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:100,181:0.64:281
chr2	101011949	rs79337584	C	A	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:83,134:0.62:217
chr2	101014247	rs4149517	C	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	101022963	rs7571659	A	G	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:106,177:0.63:283
chr2	101031588	.	TA	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.354;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr2	101086894	rs13385681	G	A	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:60,83:0.58:143
chr2	101086966	rs13411940	C	T	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:170,242:0.59:412
chr2	101087104	rs13414632	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr2	101087191	rs13388529	G	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	101093556	rs6726587	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	101095733	rs7561811	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	101096802	rs7565675	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	101096834	rs13428749	C	A	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	101096860	rs7568519	T	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	101096903	rs13393776	T	C	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	101096960	rs1519654	C	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	101126124	rs1829479	T	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	101179341	rs2970988	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.78;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	101179341	.	AG	GA,GG	91	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=3;MMLQ=24;MQ=60.0;NF=4,9;NR=0,2;PP=29,91;QD=20.6169687156;SC=CTTCTGTGCCAGTTCCTTGAA;SbPval=1.0;Source=Platypus;TC=12;TCF=10;TCR=2;TR=4,11;WE=101179350;WS=101179331;set=Platypus	GT:AF:DP	0/1:0.33:12
chr2	101179342	rs2309848	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.38;ReadPosRankSum=0.312;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	101186088	rs1052117	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	101188373	rs138885839	C	CCTGTGTATGAGTGA	1615.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr2	101437561	rs6542989	G	A	4989.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:136,235:0.63:371
chr2	101437601	rs6542990	C	G	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:153,236:0.61:389
chr2	101437762	rs13390078	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	101520972	rs5832941	A	AT	325.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	101521173	rs57350721	ATT	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.000;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr2	101541798	rs356651	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	101564628	rs10207725	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr2	101566070	rs3739005	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	101581246	rs7581886	C	T	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	101581294	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.314;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chr2	101581976	rs4851392	A	G	442.88	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr2	101591304	rs2305160	A	G	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:121,223:0.65:344
chr2	101594073	rs72974863	C	T	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:60,130:0.68:190
chr2	101604776	rs59101822	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr2	101609827	rs9223	C	T	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:449,198:0.31:647
chr2	101619283	rs2278724	C	G	11927.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	101619321	rs2278723	T	C	13380.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr2	101619332	rs17025161	G	A	7367.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:158,350:0.69:508
chr2	101620766	rs13420285	C	G	5303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.695;QD=15.02;ReadPosRankSum=-0.217;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:104,249:0.71:353
chr2	101620856	rs34386800	TA	T	1017.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=19.067;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=2.334;QD=10.39;ReadPosRankSum=-0.869;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:28,70:0.71:98
chr2	101622627	rs17025173	C	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr2	101622728	rs10934	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.603;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr2	101624332	rs150740812	A	AAAG	5165.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:85,131:0.61:216
chr2	101624471	rs746924	T	C	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	101624744	rs144392214	G	GAAAT	2876.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,73:0.69:106
chr2	101635287	rs17025189	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr2	101635538	rs13007048	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr2	101638888	rs3739014	A	G	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	101640141	rs149213622	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-1.472;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:105,53:0.34:158
chr2	101644648	rs72976870	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr2	101644855	rs11683877	G	A	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:224,161:0.42:385
chr2	101644910	rs17025203	C	T	10090.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:303,487:0.62:790
chr2	101648926	rs6719728	C	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=0.344;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	101652732	rs4850957	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr2	101656726	rs2289953	T	C	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:158,243:0.61:401
chr2	101675808	rs7572457	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr2	101889962	rs6710491	G	C	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr2	101925026	rs11123868	T	C	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	101967346	rs6543032	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,59:0.34:176
chr2	101967670	rs150807813	G	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	101971618	rs6753727	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr2	102018908	rs2175968	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.733;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:90,36:0.29:126
chr2	102027050	rs35603034	CT	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.807;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:143,43:0.23:186
chr2	102027132	rs58967721	G	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.065;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:124,50:0.29:174
chr2	102029274	rs77875445	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	102031176	rs4851434	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	102031360	rs78860341	C	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=1.059;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:168,85:0.34:253
chr2	102031489	rs4851435	C	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr2	102035192	rs6709913	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	102038849	rs4851436	T	A	11007.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr2	102045607	rs17025577	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.305;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr2	102066878	rs4851448	A	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	102067083	rs7585228	T	C	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:55,128:0.70:183
chr2	102068715	rs11123884	C	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=-0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	102068743	rs147141653	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.253;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	102068872	rs4851449	T	A	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-1.352;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:66,101:0.60:167
chr2	102069002	rs4851450	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.280;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	102090619	rs116256179	G	A	3202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=1.065;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:82,154:0.65:236
chr2	102314437	rs13430711	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	102315057	rs1567385	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=2.005;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	102448164	rs149086802	CT	C	1288.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr2	102480317	rs61741756	A	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr2	102483883	rs17745869	T	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	102501891	rs57584884	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	102505434	rs79538056	A	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,115:0.67:172
chr2	102632582	rs3819369	T	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr2	102642525	rs142449580	G	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	102645013	.	G	GT	24	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=11;HapScore=2;MGOF=0;MMLQ=26;MQ=60.72;NF=0;NR=3;PP=24;QD=12.0;SC=CTTACATTCTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=3;WE=102645021;WS=102645003;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	102774054	rs2287047	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=1.882;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	102781856	rs3917288	T	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.64;ReadPosRankSum=-1.915;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	102788409	rs2041747	G	A	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	102805461	rs34996385	TA	T	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	102805468	.	A	G	492.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	102817954	rs2302623	A	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	102828378	rs138145179	A	AT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.93;ReadPosRankSum=-0.568;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	102842420	rs33946385	G	A	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:100,146:0.59:246
chr2	102954653	rs13431828	C	T	3578.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:48,166:0.78:214
chr2	102955468	rs1041973	C	A	3794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.622;QD=13.75;ReadPosRankSum=0.748;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:94,182:0.66:276
chr2	102955523	rs3214363	CT	C	2296.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,72:0.63:115
chr2	102957348	rs10173081	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr2	102967928	rs4988955	A	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	102968007	rs4988956	G	A	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr2	102968075	rs4988957	T	C	14211.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr2	102968115	rs114130235	G	A	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:414,213:0.34:627
chr2	102968211	rs10192036	CA	AG	14819.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr2	102968285	rs4988958	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	102968356	rs10192157	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	102968362	rs10206753	T	C	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.92;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	102984624	rs1362348	C	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	102998279	rs3213732	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	103006448	rs6749014	C	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	103010912	rs1420096	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	103039584	rs3817465	A	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	103039686	rs11401010	C	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.199;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:190,102:0.35:292
chr2	103040247	rs11377261	T	TG	1741.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.07;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	103040249	rs2272129	C	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	103048735	rs62154971	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.522;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	103048738	rs62154972	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	103057668	rs11465700	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	103059613	rs1558651	A	G	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	103063489	rs11465722	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr2	103068156	rs917998	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr2	103120179	rs7575867	C	T	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.865;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:201,82:0.29:283
chr2	103120232	rs2075188	G	A	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	103120311	rs2075187	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	103125182	rs6724322	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	103125457	rs6739301	A	G	15029.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	103125466	rs6742381	T	C	14702.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	103128866	rs4851609	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	103136309	rs1403550	T	C	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	103136446	rs1403551	T	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	103141447	rs2015478	A	G	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	103141651	rs1024798	G	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	103149100	rs1014286	G	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	103149162	rs2008159	A	G	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	103149182	rs2008157	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	103273930	rs115438436	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	103300070	rs41280599	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	103300506	rs6757258	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	103324575	rs17833353	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr2	103343234	rs3796061	G	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	103343275	rs34958116	G	GA	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.217;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.042;QD=5.56;ReadPosRankSum=-0.210;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	103348342	rs79569287	G	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	103375056	rs2732838	T	G	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	103378581	rs5833037	CT	C	270.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.92;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	103378857	rs2540298	C	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	103431404	rs887987	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	104995800	rs4851692	C	T	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr2	105472055	rs186512421	T	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.062;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	105654588	rs13399067	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:113,55:0.33:168
chr2	105654716	rs3739160	C	T	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:89,158:0.64:247
chr2	105665808	rs11538197	C	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.000;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	105705367	rs112048452	T	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	105706476	rs75278939	T	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr2	105708797	rs114057600	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr2	105709023	rs6543282	T	C	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	105713868	rs10206662	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	105713868	.	AAGAAAATAT	GAGAAAATAC,GAGAAAATAT	156	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=3,7;NR=9,17;PP=156,61;QD=17.4556562385;SC=TGAAGTTCGTAAGAAAATATA;SbPval=0.71;Source=Platypus;TC=24;TCF=7;TCR=17;TR=12,24;WE=105713885;WS=105713858;set=Platypus	GT:AF:DP	0/1:0.50:24
chr2	105713877	rs57214748	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.619;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	105886219	rs2241798	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr2	105897261	rs2679833	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	105915128	rs12476720	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr2	105924510	rs2241801	A	G	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,238:1.00:239
chr2	105953938	rs3217439	G	GC	6036.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	105961703	rs2679842	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	105977903	rs2244182	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	106002854	rs11537578	G	A	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr2	106013216	rs11891016	T	C	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	106013248	rs11884297	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr2	106471393	rs6543345	T	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	106471825	rs3832068	C	CA	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	106682226	rs4271786	T	C	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.03;ReadPosRankSum=-1.128;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr2	106682235	rs4266035	C	G	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.80;ReadPosRankSum=1.069;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr2	106682365	rs4477942	T	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:38,88:0.70:126
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	872.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.49;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	106713480	rs17032319	C	G	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:108,199:0.65:307
chr2	106715342	rs3820891	G	A	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	106717274	rs3739136	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	106717656	rs10177888	G	A	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	106742139	rs4851925	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:115,83:0.42:198
chr2	106742177	rs3739137	T	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:121,80:0.40:201
chr2	106780015	rs3910716	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	106780055	rs10631203	C	CTG	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	106782398	rs4851115	C	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	106810727	rs7604916	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.33;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	106992845	rs56959583	A	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	106992963	rs11464214	A	AG	3060.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	107007576	rs60043380	A	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr2	107107694	rs6543414	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.35;QD=28.97;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	107107765	rs6543415	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	107112756	.	C	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.94;MQRankSum=-2.817;QD=18.38;ReadPosRankSum=-0.469;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	107112773	.	T	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-2.657;QD=18.22;ReadPosRankSum=-0.909;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	107118881	rs186957598	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	107118896	rs4340514	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr2	107119020	rs141316846	G	A	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:119,117:0.50:236
chr2	107119136	rs4365459	G	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=0.491;QD=7.58;ReadPosRankSum=1.432;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr2	107120832	rs144796016	C	T	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-1.948;QD=24.49;ReadPosRankSum=0.462;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:33,56:0.63:89
chr2	107120841	rs113865722	T	C	2111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=51.69;MQRankSum=-1.529;QD=25.14;ReadPosRankSum=-0.798;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:31,53:0.63:84
chr2	107120936	rs73952239	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	107121040	rs146000492	T	TA	1071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=0.212;QD=15.09;ReadPosRankSum=0.942;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:14,57:0.80:71
chr2	107121050	rs199619962	T	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-4.038;QD=5.39;ReadPosRankSum=-1.613;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr2	107121148	rs200709306	C	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,44:0.42:104
chr2	107423188	rs1470591	G	A	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:92,185:0.67:277
chr2	107423395	rs1470590	T	G	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:83,176:0.68:259
chr2	107429801	rs6739022	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	107446396	rs877693	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	107446430	rs935565	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	107460474	rs12473361	T	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	108608725	.	CAA	C	654.73	.	AC=1;AF=0.500;AN=2;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:63,21:0.25:84
chr2	108618540	rs3731683	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	108622589	rs78245030	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:157,92:0.37:249
chr2	108863539	rs17035894	A	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	108863767	rs9308806	A	C	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	108875244	rs6722745	T	C	4762.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:102,224:0.69:326
chr2	108876983	rs17035932	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	108877062	rs4141932	T	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:53,90:0.63:143
chr2	108915136	rs7590599	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	108915263	rs4149422	C	T	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	108994808	rs1402467	C	G	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	108998797	rs145051924	A	AG	4314.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.715;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:50,261:0.84:311
chr2	108998798	rs4149434	T	A	13060.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.73;ReadPosRankSum=-0.959;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:2,311:0.99:313
chr2	108999022	.	AAT	A	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.759;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr2	108999483	.	CAA	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.746;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr2	108999786	rs4149436	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	109003717	rs11569690	T	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.374;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:56,44:0.44:100
chr2	109065858	rs2460947	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chr2	109066234	rs377365761	AT	A	65.19	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	109069008	rs2683797	T	C	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:84,142:0.63:226
chr2	109069147	.	CTTTT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.47;ReadPosRankSum=-1.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	109089404	rs2243888	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	109098998	rs2577615	A	G	113.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	109099385	rs2577614	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr2	109099477	rs2577613	A	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=1.416;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,58:0.65:89
chr2	109099572	rs2718698	C	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	109104356	.	AT	A	151.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;QD=10.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	109109325	rs143344405	TAAGA	T	1241.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	109123996	rs2577596	T	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	109292235	.	A	G	473.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr2	109292280	rs7584953	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:135,92:0.41:227
chr2	109336145	rs113447280	C	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	109389282	rs17036878	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	109389463	rs826580	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:117,53:0.31:170
chr2	109393522	rs58272304	TG	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	109400267	rs10185197	C	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:116,50:0.30:166
chr2	109403177	rs10195166	C	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	109403375	rs13389858	A	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=11.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.406;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr2	109403455	rs13415653	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.65;ReadPosRankSum=-0.293;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	109411147	rs13424880	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:110,52:0.32:162
chr2	109411248	rs111234702	GAATAT	G	303.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	109429146	rs975597	T	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr2	109429262	rs10205240	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,51:0.36:141
chr2	109490104	rs6737810	A	G	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	109513321	rs7607563	C	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr2	109513654	rs12623957	G	A	6019.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:155,285:0.65:440
chr2	109513786	rs3789738	A	T	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.862;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:26,48:0.65:74
chr2	109522720	rs260639	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr2	109522747	rs3833574	CT	C	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,33:0.28:119
chr2	109526969	rs260632	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	109527087	rs260631	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr2	109527373	rs260630	A	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	109539653	rs260643	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.81;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	109539653	.	AT	GC,GT	268	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=4;MMLQ=24;MQ=60.0;NF=4,17;NR=0,2;PP=9,268;QD=15.6169687156;SC=TGTGGCAAACATCCCTCCCTT;SbPval=1.0;Source=Platypus;TC=19;TCF=17;TCR=2;TR=4,19;WE=109539662;WS=109539643;set=Platypus	GT:AF:DP	0/1:0.21:19
chr2	109539654	rs2077536	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.350;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.947;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	109539774	rs3749107	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,56:0.37:151
chr2	109539913	rs748225	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:76,47:0.38:123
chr2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	2421.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=44.03;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	109745929	rs1367274	C	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=7.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.933;SOR=1.754;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr2	109746038	rs189197650	C	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	109929958	rs6748434	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	109964431	rs6725756	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr2	110322236	rs58031484	A	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	110323462	rs183258808	T	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr2	110332130	rs4953730	G	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr2	110343555	rs73953167	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	110350939	.	T	A	224.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	110350986	.	C	CTTTTT	98.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	110351726	rs73953168	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.842;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	110371493	rs3829700	A	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	110372192	rs6594048	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	110373197	rs1560884	G	A	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:244,142:0.37:386
chr2	110552150	.	A	G	178.78	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=19.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	110849222	rs141095578	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=48.21;MQRankSum=-4.002;QD=2.26;ReadPosRankSum=-1.257;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:215,58:0.21:273
chr2	110917627	rs10174448	A	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr2	110922064	rs71793890	C	CA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.271;QD=4.64;ReadPosRankSum=2.016;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:46,39:0.46:85
chr2	110925982	rs11453404	G	GA	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.788;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:71,54:0.43:125
chr2	110937101	rs11898910	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.196;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	110962726	rs3789726	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	111397237	rs112515450	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.453;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr2	111398472	rs13398617	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	111406724	rs371794428	TCA	T	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr2	111419426	rs7609252	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:147,77:0.34:224
chr2	111425009	rs10197162	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr2	111526090	.	TGA	T	318.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	111551763	rs13388313	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:161,92:0.36:253
chr2	111644475	rs10188079	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr2	111644491	rs66815319	TA	T	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr2	111721142	rs200046640	ATGTGTG	A	2129.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:87,81:0.48:168
chr2	111789092	rs3789090	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr2	111851198	rs67248863	A	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:92,52:0.36:144
chr2	111851212	rs13025330	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr2	111886180	.	C	CT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=2.223;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	111899726	rs1975369	A	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	111907691	rs724710	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.092;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:127,49:0.28:176
chr2	111911535	rs114328646	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	112536264	rs76115652	G	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.15;QD=29.80;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	112540142	.	T	C	453	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=27;MQ=47.22;NF=0;NR=24;PP=453;QD=20.3238005228;SC=TGGCTGGAAATAGTGTTTTCC;SbPval=1.0;Source=Platypus;TC=81;TCF=14;TCR=67;TR=24;WE=112540150;WS=112540132;set=Platypus	GT:AD:AF:DP	1/0:57,24:0.30:81
chr2	112582523	rs74602614	G	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=0.655;QD=4.91;ReadPosRankSum=-0.150;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:81,37:0.31:118
chr2	112590989	rs3761697	A	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.970;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	112605465	rs4848800	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	112616040	.	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.46;MQRankSum=1.329;QD=7.33;ReadPosRankSum=-0.182;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	112625575	rs6742515	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.622;QD=6.86;ReadPosRankSum=-1.020;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr2	112641256	rs2037198	G	A	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.15;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	112641256	.	GA	AA,AG	781	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.55;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=12,2;NR=56,21;PP=781,389;QD=11.9966354786;SC=AGGCCAGTCTGAAAGCTGAGG;SbPval=0.57;Source=Platypus;TC=71;TCF=13;TCR=58;TR=68,23;WE=112641265;WS=112641245;set=Platypus	GT:AF:DP	0/1:0.96:71
chr2	112641257	rs7575582	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.234;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr2	112641283	rs12233011	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr2	112656392	rs115821982	G	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr2	112687157	.	A	ATATTTATT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=4.237;QD=7.58;ReadPosRankSum=-1.890;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	112702793	rs6730908	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.039;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	112704862	rs7601798	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr2	112705157	rs3761701	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	112705185	rs3761700	G	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	112722854	rs7588635	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chr2	112725684	rs113538397	A	ATGTGTG	3705.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.06;QD=41.64;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	112740373	rs1996323	G	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	112751928	rs7604639	G	A	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	112752142	rs7592909	A	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	112752362	rs11287004	GA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.22;ReadPosRankSum=0.339;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	112752880	rs6739294	G	A	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	112753097	rs6726639	A	C	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	112753781	rs34346510	TA	T	10228.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	112753883	rs10173553	C	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	112754828	rs3811632	G	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:32,76:0.70:108
chr2	112755001	rs2230515	A	G	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	112761653	rs4848933	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr2	112765973	rs1131244	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,99:0.66:150
chr2	112766262	rs10210692	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:48,95:0.66:143
chr2	112770770	rs4374383	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr2	112770798	rs4500955	T	C	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,88:0.69:127
chr2	112770821	rs10179948	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr2	112773366	rs6710591	A	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	112773528	rs111619827	TCTTGTAC	T	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr2	112776979	rs3811640	C	A	4641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.009;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:150,227:0.60:377
chr2	112778261	rs13416895	G	C	3117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.861;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:74,153:0.67:227
chr2	112779286	rs10667527	A	ATC	1212.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	112780064	rs6735717	A	G	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:127,162:0.56:289
chr2	112785891	rs10180086	C	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr2	112786049	rs2230517	G	A	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:166,260:0.61:426
chr2	112786357	rs10205793	G	A	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:75,133:0.64:208
chr2	112813163	rs10176769	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	112813391	rs9308665	C	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr2	112832535	rs71385858	CAAT	C	1347.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	112832684	rs6542026	G	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	112847164	rs11123128	C	T	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:151,204:0.57:355
chr2	112854584	rs4849005	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	112856165	rs4849007	C	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	112858122	rs4848272	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	112863802	rs7599479	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.25;ReadPosRankSum=-0.712;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	112865254	rs115669080	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.31;ReadPosRankSum=-0.751;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	112865517	rs7562848	G	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	112917102	rs1320360	G	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	112945188	rs4848281	T	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,23:0.24:94
chr2	112945220	rs11123130	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr2	112995810	rs2254860	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	113007757	rs17781007	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.465;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr2	113012526	rs181276061	G	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:111,69:0.38:180
chr2	113074775	rs5833444	C	CT	425.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.000;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr2	113079576	rs4507112	C	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	113082250	rs59100751	CT	C	3164.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	113089267	rs7601200	T	C	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr2	113090047	rs4578863	T	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	113190948	rs184201559	G	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	113239833	rs13424690	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.893;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	113240183	rs3811038	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr2	113251711	rs114392806	A	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr2	113258671	rs62157516	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	113258916	rs17846193	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr2	113260361	rs116304754	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	113277707	.	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=15.911;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.000;QD=3.03;ReadPosRankSum=0.851;SOR=4.166;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	113300283	rs2241804	C	G	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:34,96:0.74:130
chr2	113300330	rs4849071	G	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	113303355	rs60518507	C	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.191;QD=6.19;ReadPosRankSum=0.475;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	113303411	rs61669219	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.719;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	113305150	rs11123139	G	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:169,99:0.37:268
chr2	113306827	rs62158585	A	G	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr2	113307076	.	CT	C	108	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5007;HP=20;HapScore=4;MGOF=13;MMLQ=27;MQ=60.0;NF=2;NR=6;PP=108;QD=13.875;SC=ATTTTTGTTTCTTTTTTTTTT;SbPval=0.53;Source=Platypus;TC=14;TCF=3;TCR=11;TR=8;WE=113307089;WS=113307066;set=Platypus	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	113307081	.	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-1.121;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	113308516	rs2304555	T	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:191,67:0.26:258
chr2	113308622	rs3816140	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.554;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr2	113309620	rs7597698	G	A	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:96,53:0.36:149
chr2	113310197	rs11351307	CT	C	1069.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.576;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.314;QD=17.83;ReadPosRankSum=1.413;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:3,57:0.95:60
chr2	113321911	rs113605612	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr2	113325679	rs34051897	T	C	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=1.628;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:172,105:0.38:277
chr2	113326281	rs6746874	C	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	113326502	rs13010814	C	T	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	113332421	rs10169344	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr2	113332898	rs34628059	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:133,71:0.35:204
chr2	113344047	rs752992	T	C	17837.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.74;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,693:1.00:693
chr2	113346508	rs201419705	C	T	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.641;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:122,81:0.40:203
chr2	113346512	rs1047652	A	C	6643.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.22;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	113404331	rs79145667	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr2	113418590	rs116500060	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr2	113479614	rs13386452	G	A	8807.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:229,414:0.64:643
chr2	113479745	rs34781106	AC	A	8622.73	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:184,325:0.64:509
chr2	113480938	.	G	GCACACA,GCACA	1980.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=113;set=Intersection	GT:AF:DP	0/1:0.72:99
chr2	113481439	rs13384583	T	A	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:116,226:0.66:342
chr2	113481547	rs2063919	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr2	113482610	rs116724373	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr2	113482779	rs4849116	A	C	20805.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,808:1.00:808
chr2	113483037	rs13417956	A	T	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.015;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:174,90:0.34:264
chr2	113484319	rs2138604	G	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	113484353	rs2138605	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	113484441	rs2138606	T	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr2	113513825	rs6731822	T	C	11003.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	113514883	rs11311327	AT	A	315.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	113532885	rs3783550	G	T	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	113535395	rs2071376	G	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	113535438	rs2071375	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr2	113535770	.	G	GGTGTGTGT,GGTGTGT	405.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:10
chr2	113537223	rs17561	C	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr2	113540177	rs1894399	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr2	113540205	rs1609682	G	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	113588755	rs1143640	CAA	C	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	113588793	rs1143639	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr2	113590390	rs1143634	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:123,62:0.34:185
chr2	113763575	rs895497	A	G	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	113764404	rs11901453	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr2	113783671	rs13429363	G	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr2	113783909	rs6744874	A	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	113785020	rs12711747	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.509;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	113785727	rs1562304	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	113786833	rs3948121	C	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr2	113789316	rs2305150	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	113818632	rs2251872	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	113819614	rs2252007	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr2	113830201	rs3811051	T	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr2	113832312	rs6761276	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:124,70:0.36:194
chr2	113832333	rs6743376	C	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,52:0.34:153
chr2	113877495	rs928940	G	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	113885322	rs4252004	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr2	113887349	rs4252012	C	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr2	113890304	rs315952	T	C	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-3.045;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:438,175:0.29:613
chr2	113950271	rs45540641	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	113953401	rs923693	A	G	16980.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr2	113953508	rs6755077	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:132,51:0.28:183
chr2	113953657	rs4849169	A	C	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:99,209:0.68:308
chr2	113953952	rs4848318	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	113953973	rs71385890	A	AT	977.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=-0.486;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	113953974	rs10579377	GACA	G	977.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=-0.748;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	113953984	rs7603621	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.137;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	113955074	rs902695	G	A	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:60,117:0.66:177
chr2	113955233	rs45449699	C	T	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.756;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:160,80:0.33:240
chr2	113956371	rs2276561	G	C	6602.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:130,303:0.70:433
chr2	113956821	rs2305133	C	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr2	113977862	rs4849175	T	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	113984503	rs2241975	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.83;ReadPosRankSum=-0.900;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	113994079	rs77270532	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	113994417	rs1110839	G	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,99:0.63:156
chr2	113999736	rs13015478	G	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr2	114000458	rs902691	C	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	114035750	rs2277884	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=1.593;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	114035923	rs1867763	A	G	4630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=2.818;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:482,268:0.36:750
chr2	114220055	rs1210133	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	114386172	rs368603894	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	114386338	rs149500718	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=48.86;MQRankSum=-1.351;QD=18.36;ReadPosRankSum=2.566;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	114387907	rs1964835	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:104,71:0.41:175
chr2	114387950	rs1040646	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr2	114390566	rs139259451	C	T	6900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=2.182;QD=14.14;ReadPosRankSum=-1.774;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:165,323:0.66:488
chr2	114392716	rs146907164	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:147,78:0.35:225
chr2	114425212	.	AGGTGGG	A	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=0.854;QD=26.09;ReadPosRankSum=-0.619;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	114425263	rs187515355	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.215;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=0.904;QD=6.78;ReadPosRankSum=-1.032;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr2	114425425	rs145764632	C	A	3947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=47.66;MQRankSum=-4.655;QD=12.53;ReadPosRankSum=1.439;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:126,189:0.60:315
chr2	114426115	rs80314553	T	C	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:122,159:0.57:281
chr2	114429542	rs13003858	G	A	1548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=0.426;QD=3.61;ReadPosRankSum=-0.497;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:314,115:0.27:429
chr2	114429576	rs12986781	T	C	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-0.921;QD=3.90;ReadPosRankSum=0.995;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:274,103:0.27:377
chr2	114476582	rs6741521	C	A	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	114480812	rs3835109	A	AAAC	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	114486907	rs4849269	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	114492034	rs59207776	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr2	114492135	rs2305254	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	114493524	rs10199704	C	T	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	114512761	.	G	A	2253.77	.	AC=1;AF=0.500;AN=2;DP=409;set=Intersection	GT:AD:AF:DP	0/1:270,130:0.33:400
chr2	114513386	rs7578249	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	114513787	rs4538208	C	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	114514098	rs7592689	A	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	114674676	rs78199290	A	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	114691809	rs5833524	G	GT	519.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.015;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr2	114709476	rs13418557	A	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	115200423	rs7560788	C	T	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:328,145:0.31:473
chr2	115919677	rs7557011	CT	GC	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	116066984	rs975453	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-1.239;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr2	116099725	rs843403	A	T	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	116101335	rs76093479	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr2	116497479	rs1550854	A	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	116497528	rs1550853	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	116525960	rs1446495	G	A	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	116540052	rs76131123	A	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr2	116548526	rs6735355	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	116548626	rs79128058	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-2.326;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	116548820	rs3738879	C	T	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	116593675	rs10549769	ATG	A,ATGTGTG	1452.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.59;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:0,18,24:0.43,0.57:42
chr2	116593716	.	ATATT	A	200	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=3;MGOF=20;MMLQ=27;MQ=60.0;NF=2;NR=17;PP=200;QD=10.7368421053;SC=ATATATATATATATTTTTCCC;SbPval=0.89;Source=Platypus;TC=36;TCF=7;TCR=29;TR=19;WE=116593727;WS=116593704;set=Platypus	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	116593718	.	ATT	A	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.620;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr2	116599927	rs272009	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	118575215	rs1052637	C	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr2	118575468	rs6737733	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	118584043	rs17047459	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:129,78:0.38:207
chr2	118688754	rs971754	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,66:0.37:177
chr2	118692929	rs12151445	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.566;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	118694393	rs2303333	C	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:193,86:0.31:279
chr2	118696671	rs6719551	T	C	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:82,169:0.67:251
chr2	118698699	rs2303330	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr2	118704478	rs7580124	T	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	118705570	rs10186396	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,39:0.37:106
chr2	118706879	rs1035598	A	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:147,66:0.31:213
chr2	118716166	rs1991102	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr2	118732557	rs6761382	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.340;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:115,22:0.16:137
chr2	118732975	rs6722547	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	118735395	rs889899	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	118735506	rs17047608	C	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr2	118753148	rs10633675	A	ATC	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr2	118766024	rs10864966	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	118766292	rs7596280	G	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	118771566	rs11545372	C	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:215,69:0.24:284
chr2	118771663	rs12477588	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:116,79:0.41:195
chr2	118771682	rs58181584	TGCC	T	1591.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:63,45:0.42:108
chr2	118854094	.	AT	A	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.627;QD=10.30;ReadPosRankSum=0.978;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:39,95:0.71:134
chr2	119591683	rs7588093	C	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr2	119604105	.	CGCCGCCGCCGCCACTGCCGCCGCG	C	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=2.816;QD=10.49;ReadPosRankSum=-1.839;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr2	119700096	rs2077344	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	119729172	rs10181173	C	T	6826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.717;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:547,377:0.41:924
chr2	119734894	rs60485337	AAGAGAG	A	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.146;QD=8.06;ReadPosRankSum=0.564;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr2	119734918	rs77896687	G	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-2.446;QD=16.91;ReadPosRankSum=-1.938;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:26,78:0.75:104
chr2	119735251	rs2278590	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr2	119739063	rs6761637	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.485;QD=4.32;ReadPosRankSum=-0.224;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,34:0.31:111
chr2	119739182	rs10211503	T	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,40:0.40:101
chr2	119739817	rs61732824	C	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:66,108:0.62:174
chr2	119740068	rs75288198	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr2	119748135	rs3835093	TC	T	3854.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=0.754;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:5,152:0.97:157
chr2	119749477	rs2304708	T	G	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	119749858	rs3765035	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	119751867	rs11678719	C	T	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	119915132	rs11308896	CG	C	222.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	119915249	rs7556873	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:158,102:0.39:260
chr2	119988565	rs838100	G	A	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:141,232:0.62:373
chr2	119988739	rs73948626	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	120003642	rs838083	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	120005840	rs67985074	TC	T	5552.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:123,229:0.65:352
chr2	120014985	rs838072	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	120015164	rs111712266	A	G	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:487,223:0.31:710
chr2	120059895	rs16744	G	GGAAA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	120059988	rs1890	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr2	120060082	rs1052500	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	120069281	rs112925717	T	TA	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.193;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr2	120078731	rs7566912	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	120078778	rs1132267	T	C	499.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=1.244;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr2	120125029	rs2084202	A	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	120125363	rs3091405	C	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	120125936	rs2244135	T	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	120187383	rs111899866	C	CT	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr2	120188080	rs75598794	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	120189396	rs180970924	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	120189404	rs4340531	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	120189433	rs4599130	G	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	120194651	rs3217464	A	AGTGTGC	20498.73	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr2	120197771	rs75716989	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:100,48:0.32:148
chr2	120199140	rs1126839	A	G	17587.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr2	120209440	rs73951104	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	120209689	rs2587692	A	G	8183.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	120209779	rs149917246	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr2	120210853	rs10496558	G	A	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:92,181:0.66:273
chr2	120219287	.	CAA	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.437;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	120219359	.	C	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.021;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr2	120221861	rs57757577	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:107,50:0.32:157
chr2	120221984	rs2579647	A	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	120221984	.	ACTGGGTCT	CCTGGGTCC,CCTGGGTCT	103	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=13;MMLQ=27;MQ=60.0;NF=2,4;NR=4,13;PP=50,103;QD=17.2446458104;SC=TGAATGAGGAACTGGGTCTCC;SbPval=0.43;Source=Platypus;TC=17;TCF=4;TCR=13;TR=6,17;WE=120222000;WS=120221974;set=Platypus	GT:AF:DP	0/1:0.35:17
chr2	120221992	rs6729195	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.290;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	120230998	rs2579641	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr2	120231303	rs2587702	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120344873	rs6726971	T	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr2	120362407	rs1568540	C	T	5872.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.029;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=0.190;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,232:1.00:233
chr2	120362897	rs1521914	T	A	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	120366057	rs11398750	G	GT	712.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-1.023;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:8,46:0.85:54
chr2	120369300	rs10864986	T	C	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	120385094	rs71966516	GATATAT	G	721.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	120387637	rs12711931	G	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	120388412	rs2272058	G	A	7150.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	120404629	.	ATT	A,AT	3652.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.740;QD=13.14;ReadPosRankSum=-0.044;SOR=0.761;set=HC	GT:AD:AF:DP	1/2:35,62,181:0.22,0.65:278
chr2	120409430	rs1521912	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	120414083	rs6761357	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr2	120438523	rs13011768	A	G	10820.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr2	120438696	rs939777	A	G	18264.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr2	120439230	rs1983406	C	G	10139.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	120443443	rs939778	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	120620092	.	AT	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.148;QD=0.75;ReadPosRankSum=-0.354;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:153,42:0.22:195
chr2	120643280	rs74866537	G	GT	114.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	120689905	rs2292361	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=8.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.929;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	120718672	rs6737776	T	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	120725704	rs10194955	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	120734737	rs3832049	C	CA	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	120889175	rs139599074	C	CT	1157.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr2	120900736	rs75582263	T	C	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,105:0.61:171
chr2	120925152	rs77846816	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.680;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:94,43:0.31:137
chr2	120997857	rs74734169	A	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.243;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:67,32:0.32:99
chr2	120997868	rs200721096	TA	T	203.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.221;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr2	120997869	rs6746072	A	T	611.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-0.235;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:42,33:0.44:75
chr2	121036385	rs12711939	TT	GA	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;JOINED;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr2	121043403	rs4091515	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.089;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	121103903	rs11900747	T	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr2	121107075	rs61737548	C	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:218,115:0.35:333
chr2	121223274	rs17050160	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:109,61:0.36:170
chr2	121554750	rs7569576	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	121708663	rs10864866	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	121712729	rs10175446	C	T	41.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.39;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr2	121713022	rs6718382	C	G	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=41.15;SOR=3.540;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	121713030	rs12614482	G	A	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=47.24;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	121713041	rs12617878	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	121726447	rs2592595	G	A	19064.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,710:1.00:710
chr2	121729323	rs2677507	A	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	121729360	rs2592592	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	121729490	rs2592591	C	T	8476.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	121729686	rs2592590	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	121730138	rs3106962	C	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	121735854	.	G	T	614.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr2	121740190	rs1968619	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=2.428;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	121740194	rs1530580	T	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.67;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	121740505	rs280196	C	T	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,82:0.67:122
chr2	121742307	rs13008360	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr2	121744225	rs2276553	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr2	121746430	rs146811565	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.042;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:118,44:0.27:162
chr2	121746956	rs3738880	G	T	6003.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:201,282:0.58:483
chr2	121747406	rs12711538	G	A	12412.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	121747429	rs10167980	A	G	5793.73	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:176,275:0.61:451
chr2	121981950	rs11890430	A	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	121983227	rs116050964	G	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:129,62:0.32:191
chr2	121989683	.	T	TTTTTG	142.06	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	121997120	rs41278936	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:171,91:0.35:262
chr2	122004596	rs2252862	C	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr2	122007378	rs2119021	A	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr2	122106292	rs377740893	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr2	122125104	rs2304663	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr2	122145157	rs2015439	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	122161850	rs9807995	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	122205778	rs34350940	G	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	122216419	rs2304560	A	G	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	122220076	rs77617451	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	122227593	.	A	G	283.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	122260905	.	T	C	567.77	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr2	122273187	rs6711830	C	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.42;SOR=4.487;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	122283313	rs12052948	G	T	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	122286442	rs934760	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	122484976	rs1056014	G	A	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:83,140:0.63:223
chr2	122485106	rs1056006	A	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	122488335	rs146431705	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	122488379	rs59537490	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr2	122489374	rs12616209	C	T	9420.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr2	122489932	rs6726677	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	122494661	rs28372755	C	CG	1458.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=37.40;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	122514774	rs13416790	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	122516480	rs57168317	G	T	55.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	122520557	rs12328818	A	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr2	125192068	rs1425745	T	C	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr2	125232609	rs4411700	G	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	125405302	rs924802	C	T	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:53,106:0.67:159
chr2	127447763	rs6709803	G	A	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr2	127453479	rs4538146	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	127453664	rs1050967	A	C	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	127656857	rs61730218	G	A	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,58:0.31:187
chr2	127657001	rs77078950	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr2	127657208	rs75284937	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr2	127657221	rs3795873	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr2	127657441	rs183186120	T	C	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:189,279:0.60:468
chr2	127806297	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	127808226	rs2071270	A	T	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	127808532	rs2043798	G	A	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	127808909	rs6745677	G	A	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:79,202:0.72:281
chr2	127811042	rs76414720	G	A	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:121,190:0.61:311
chr2	127811712	rs35339559	G	GCA	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	127816846	rs140171337	CTG	C	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.844;QD=14.80;ReadPosRankSum=1.334;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	127818406	rs1108031	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr2	127819777	rs61748157	C	T	4263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.107;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:143,237:0.62:380
chr2	127821085	rs2071268	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:29,90:0.76:119
chr2	127821453	rs78935905	G	A	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:119,200:0.63:319
chr2	127821459	rs116251462	C	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:225,123:0.35:348
chr2	127821499	rs72481904	T	C	7471.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:182,342:0.65:524
chr2	127825968	rs934826	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr2	127826632	rs67327804	A	G	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	127834136	rs2276575	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:114,64:0.36:178
chr2	127834369	rs62157856	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	127834384	rs13387613	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	127839474	rs11682128	G	A	3873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.724;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:348,219:0.39:567
chr2	127839513	rs61525314	G	A	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:134,93:0.41:227
chr2	127944781	rs11384285	A	AC	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	127953054	rs7568070	A	C	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr2	128079806	rs3732209	A	G	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	128087651	rs61422716	C	T	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	128176040	rs1799810	A	T	11510.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr2	128176195	rs2854700	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	128180872	rs5936	G	T	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	128181028	rs1878844	A	G	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	128181234	rs2069922	GC	G	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	128184770	rs5937	T	C	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	128249441	rs334152	C	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	128261245	rs138089460	AAAAT	A	365.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	128263363	rs72159568	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.373;QD=3.08;ReadPosRankSum=-0.218;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	128271958	rs10432384	C	T	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	128281469	rs2303947	C	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	128321770	rs2404991	G	A	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:96,161:0.63:257
chr2	128342547	rs4662741	G	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	128345960	rs10928773	T	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.630;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:72,32:0.31:104
chr2	128346228	rs11673952	A	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	128350551	rs11678239	G	A	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:62,168:0.73:230
chr2	128350578	rs58867441	T	TG	4484.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	128350609	rs112864216	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr2	128351346	rs7558838	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	128363530	rs11382004	G	GC	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	128366272	rs17261971	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr2	128369896	rs777435	A	G	8728.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	128377833	rs2248519	C	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	128381808	rs13422424	C	T	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.741;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:295,167:0.36:462
chr2	128382859	rs2245297	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	128385224	rs10164978	C	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:260,114:0.30:374
chr2	128385244	rs58961411	T	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:231,100:0.30:331
chr2	128386120	rs144295028	TGGGTG	T	3662.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=44.67;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	128389343	rs10208043	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:172,106:0.38:278
chr2	128389422	rs10183797	G	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	128392647	rs60245561	G	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:100,71:0.42:171
chr2	128393261	rs2255178	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	128393289	rs2255177	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:121,68:0.36:189
chr2	128394758	rs2255039	T	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:144,71:0.33:215
chr2	128394875	rs59579995	C	CA	3388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=63.29;MQRankSum=23.208;QD=5.25;ReadPosRankSum=2.106;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:443,203:0.31:646
chr2	128394877	rs56272236	C	T,CT	24480.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.35;QD=38.80;SOR=0.759;set=HC	GT:AD:AF:DP	1/2:0,205,426:0.32,0.68:631
chr2	128396807	rs891515	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	128400608	rs4662751	C	T	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:58,123:0.68:181
chr2	128400992	rs2244513	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:111,70:0.39:181
chr2	128401091	rs2244507	A	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:162,103:0.39:265
chr2	128407499	rs2243805	G	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.203;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr2	128407771	rs1820971	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=1.531;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	128411934	rs6707277	A	G	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	128411950	rs6707282	A	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	128421829	rs79110686	G	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.196;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	128526579	.	T	TTAAATAAA	678.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=48.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	128608271	rs34858843	GA	G	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.25;ReadPosRankSum=0.433;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	128608290	rs6713679	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	128631916	rs13418973	T	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	128699833	rs1370229	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr2	128708063	rs2461463	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	128744580	rs2948068	A	G	1582.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.807;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=31.356;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.476;SOR=0.007;set=HC	GT:AD:AF:DP	1/1:14,85:0.86:99
chr2	128753854	rs1550174	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	128757804	rs10928793	C	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr2	128772371	rs75040203	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:166,59:0.26:225
chr2	128849114	rs4476299	T	C	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	128854948	.	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=2.098;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr2	128860835	rs7355336	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	128870808	rs4662775	T	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	128874061	rs10210598	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	128877837	rs4662593	G	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	128878014	rs4662594	G	A	10321.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr2	128878667	rs6430990	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	128878979	rs10636999	C	CTT	543.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.516;QD=20.91;ReadPosRankSum=-1.304;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr2	128879022	rs6430991	G	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	128880899	rs4480941	T	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	128880993	rs4633871	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	128890878	rs34066685	T	TG	6600.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	128934400	rs2290111	T	C	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=1.702;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:178,91:0.34:269
chr2	129075961	rs61732881	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,21:0.23:91
chr2	130737578	rs4233601	G	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr2	130738163	rs144773989	G	A	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.94;QD=25.97;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	130750446	rs199529770	C	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=0.735;QD=3.30;ReadPosRankSum=-0.519;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr2	130897018	.	A	G	153.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	130897055	rs28751929	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	130897234	rs3177472	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	130897559	rs2258632	C	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=25.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	130897620	rs76485676	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.62;QD=27.34;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	130899779	rs148885074	G	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.273;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=10.164;MLEAC=1;MLEAF=0.500;MQ=46.64;MQRankSum=0.781;QD=3.04;ReadPosRankSum=-1.743;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr2	130899804	rs138331089	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.43;QD=26.51;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	130900188	rs28743163	A	G	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	130902067	rs60089935	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:6,140:0.96:146
chr2	130902194	rs60152285	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.11;QD=27.86;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	130902549	rs34080706	C	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.42;QD=29.32;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	130910847	rs4511676	G	A	13770.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:1,528:1.00:529
chr2	130914797	rs145477722	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.24;QD=24.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	130915892	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=1.57;ReadPosRankSum=2.239;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr2	130925088	rs10909567	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.62;QD=25.25;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	130930819	rs60309319	C	T	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	130939288	rs1968676	A	G	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	130939348	rs1817097	G	A	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	130940090	rs1968675	G	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	130941034	rs34409208	T	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	130941065	rs6737226	T	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	130948303	rs12612244	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.58;QD=36.78;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	130948321	rs114232766	T	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.50;QD=44.39;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	130948327	rs10175962	G	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=43.66;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	130948339	rs369506457	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=17.700;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=2.734;QD=3.25;ReadPosRankSum=-2.972;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	130948341	.	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=13.877;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=2.444;QD=3.48;ReadPosRankSum=-2.722;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	130949411	rs10208844	G	T	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.51;QD=26.10;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	130949491	rs60154251	G	A	4703.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.576;MLEAC=2;MLEAF=1.000;MQ=48.46;MQRankSum=1.718;QD=26.13;ReadPosRankSum=0.712;SOR=0.651;set=HC	GT:AD:AF:DP	1/1:1,179:0.99:180
chr2	130949553	rs1052422	A	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.83;QD=27.39;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	130951548	rs1052319	G	A	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	130951566	rs7340193	G	A	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	130951581	rs1052312	A	G	11300.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.92;QD=44.67;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	130951584	rs7340507	T	C	11277.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.86;QD=44.75;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	130951625	rs76767502	G	C	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:166,78:0.32:244
chr2	130952540	rs56151061	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	130952718	rs3853852	G	A	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.11;QD=42.21;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	130952725	rs3863907	C	T	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.04;QD=44.35;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	130959959	rs58587707	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=50.84;MQRankSum=-0.418;QD=4.77;ReadPosRankSum=0.540;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:183,80:0.30:263
chr2	130960023	rs4663031	T	C	7668.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	130961729	rs201980950	A	AT	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.24;QD=21.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	130987792	rs12992461	G	A	8111.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	130988203	rs79048658	C	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-9.608;QD=3.89;ReadPosRankSum=1.484;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:199,36:0.15:235
chr2	130988216	rs76582648	C	G	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-8.571;QD=4.48;ReadPosRankSum=-0.217;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:176,40:0.19:216
chr2	130988276	rs3894178	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-3.200;QD=0.31;ReadPosRankSum=-1.091;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:168,26:0.13:194
chr2	130988410	rs202147725	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-3.231;QD=1.29;ReadPosRankSum=-1.138;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr2	130988421	rs200539608	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=46.61;MQRankSum=-3.469;QD=0.97;ReadPosRankSum=-0.490;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:104,20:0.16:124
chr2	131096717	rs73960309	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:88,47:0.35:135
chr2	131100545	rs61737124	G	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:109,58:0.35:167
chr2	131113892	rs138783497	C	CG	875.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-2.444;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:69,40:0.37:109
chr2	131114042	rs75367913	G	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	131114281	.	C	A	6568.77	.	AC=1;AF=0.500;AN=2;DP=500;set=Intersection	GT:AD:AF:DP	0/1:175,315:0.64:490
chr2	131116261	rs73960313	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr2	131116404	rs7568956	T	C	4114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.873;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:376,235:0.38:611
chr2	131127323	rs112331268	A	AC	2455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=3.820;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.949;QD=7.44;ReadPosRankSum=1.152;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:217,113:0.34:330
chr2	131128201	rs1533567	G	A	4392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.938;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:221,122:0.36:343
chr2	131128204	rs1533566	A	G	4404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.407;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:225,121:0.35:346
chr2	131128498	rs1533565	A	G	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:619,279:0.31:898
chr2	131129928	rs112040677	AGACGGG	A	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	131130435	rs6741871	G	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr2	131130558	rs57702732	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:107,58:0.35:165
chr2	131130678	rs10189689	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,36:0.35:104
chr2	131334592	.	T	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=0.258;QD=0.92;ReadPosRankSum=-0.260;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr2	131356322	rs201431919	C	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=0.266;QD=2.60;ReadPosRankSum=-0.819;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:167,46:0.22:213
chr2	131486765	rs80008074	C	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:107,71:0.40:178
chr2	131487673	rs272128	A	C	11744.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr2	131487897	rs11894380	A	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr2	131519495	rs76035719	C	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	131520663	rs1905235	T	C	11917.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr2	131520945	rs72854996	C	G	3870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.256;QD=6.74;ReadPosRankSum=2.169;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:352,222:0.39:574
chr2	131522065	rs115224518	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr2	131672950	rs12464119	A	G	13136.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:3,502:0.99:505
chr2	131673223	rs3739130	C	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:388,203:0.34:591
chr2	131673316	rs3739129	C	T	5074.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:99,228:0.70:327
chr2	131673528	rs3739128	C	G	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:272,147:0.35:419
chr2	131673871	rs116462083	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.276;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:76,38:0.33:114
chr2	131674285	rs3739127	A	G	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:93,155:0.62:248
chr2	131674471	rs3739126	C	T	2245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.206;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:444,153:0.26:597
chr2	131674537	rs80074373	C	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:357,127:0.26:484
chr2	131688587	rs6718816	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:115,59:0.34:174
chr2	131703968	rs67022442	G	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	131769237	rs13023338	G	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-0.603;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr2	131796770	.	ACTC	A	312.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	131798737	rs2241460	C	G	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:337,176:0.34:513
chr2	131799563	rs2241461	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr2	131800943	rs2288189	G	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr2	131802045	rs10928515	C	T	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.243;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:163,77:0.32:240
chr2	131805984	rs11541220	G	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	131812738	rs3814391	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr2	131829560	rs34094232	A	ACACC	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr2	131888361	.	A	AT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.546;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr2	131888424	rs3762570	C	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	132111121	rs11895354	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=-2.093;QD=32.15;ReadPosRankSum=0.108;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	132111123	rs370814343	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=-2.093;QD=32.15;ReadPosRankSum=0.538;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	132111127	rs13410274	G	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.66;MQRankSum=-2.093;QD=32.15;ReadPosRankSum=0.538;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	132111166	.	G	GCC	678.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.08;QD=39.93;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	132111167	.	G	GCCGCCGCCGC	678.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.86;QD=37.71;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	132120501	rs146351322	C	CT	1506.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,81:0.54:150
chr2	132121350	rs371054387	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=-1.355;QD=1.63;ReadPosRankSum=0.031;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr2	132200136	rs73960420	C	A	71.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.66;MQRankSum=-1.150;QD=17.95;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	132200256	rs71345553	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr2	132200307	rs71345554	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:134,75:0.36:209
chr2	132200529	rs71345555	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:179,64:0.26:243
chr2	132200568	rs62176150	C	T	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:94,186:0.66:280
chr2	132201582	rs1806886	A	G	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:308,137:0.31:445
chr2	132201663	rs1317139	T	C	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.369;QD=5.28;ReadPosRankSum=1.180;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:284,129:0.31:413
chr2	132201718	rs2001215	T	C	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:293,142:0.33:435
chr2	132201736	rs2076798	C	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:298,142:0.32:440
chr2	132201862	rs1806887	C	G	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-4.275;QD=2.66;ReadPosRankSum=-2.331;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:334,93:0.22:427
chr2	132201889	rs2007096	C	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-6.665;QD=1.73;ReadPosRankSum=0.270;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:259,56:0.18:315
chr2	132201930	rs13411254	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-6.809;QD=1.85;ReadPosRankSum=0.943;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:176,40:0.19:216
chr2	132202050	rs13413908	T	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-2.461;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:96,49:0.34:145
chr2	132237927	rs200147665	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=14.738;MLEAC=1;MLEAF=0.500;MQ=49.83;MQRankSum=-3.185;QD=0.93;ReadPosRankSum=-1.276;SOR=2.014;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr2	132237983	rs71347110	A	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=15.546;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-7.912;QD=3.05;ReadPosRankSum=-2.729;SOR=2.161;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr2	132248379	rs12469517	T	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:181,96:0.35:277
chr2	132248584	rs10182785	T	C	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	132248876	rs6709245	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	132249372	rs6706952	C	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	132249600	rs2272357	G	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-0.478;QD=17.86;ReadPosRankSum=1.389;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	132249605	rs2272358	G	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-0.478;QD=17.86;ReadPosRankSum=1.817;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	132257830	rs13035779	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-4.426;QD=5.22;ReadPosRankSum=0.900;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:171,83:0.33:254
chr2	132258031	rs3108473	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:83,34:0.29:117
chr2	132258044	rs200875660	CCT	C	1374.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:108,41:0.28:149
chr2	132258484	rs139623617	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	132258815	rs12691986	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:106,51:0.32:157
chr2	132266015	rs12477848	T	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr2	132266142	rs12691988	G	C	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:233,112:0.32:345
chr2	132266281	rs35012291	TG	T	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr2	132272235	rs36013871	GA	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-4.116;QD=2.88;ReadPosRankSum=0.849;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr2	132272326	rs12477742	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-8.439;QD=3.87;ReadPosRankSum=1.464;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr2	132273092	rs2950565	T	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	132273230	rs200050248	AC	A	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=50.66;MQRankSum=0.584;QD=8.49;ReadPosRankSum=0.278;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	132273796	.	G	GCA	271	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=3;MGOF=44;MMLQ=27;MQ=58.97;NF=3;NR=2;PP=271;QD=68.1820016877;SC=CCACGGTGGAGCCAACCCTCA;SbPval=0.77;Source=Platypus;TC=15;TCF=8;TCR=7;TR=5;WE=132273810;WS=132273786;set=Platypus	GT:AD:AF:DP	1/0:10,5:0.33:15
chr2	132273797	.	C	CA	382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=5.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.566;SOR=1.891;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	132273798	.	C	CT	382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=5.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.336;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	132273801	.	C	T	432.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.732;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.221;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr2	132273802	rs201262646	C	CATTAG	423.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr2	132273988	rs199565961	GC	G	1907.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr2	132273994	rs372388255	T	G	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr2	132274474	rs13010688	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr2	132275343	rs12691998	G	T	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:486,286:0.37:772
chr2	132275396	rs2277878	T	C	5548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-4.405;QD=6.78;ReadPosRankSum=-1.074;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:502,316:0.39:818
chr2	132275838	rs12692001	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-0.108;QD=4.82;ReadPosRankSum=-0.792;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	132276254	rs28621583	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	132276650	.	G	C	107	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=26;MQ=51.65;NF=8;NR=3;PP=107;QD=12.8882920497;SC=GCTCATCACAGAGGCCAAACA;SbPval=0.68;Source=Platypus;TC=33;TCF=23;TCR=10;TR=11;WE=132276658;WS=132276640;set=Platypus	GT:AD:AF:DP	1/0:22,11:0.33:33
chr2	132277686	rs9287520	C	T	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=1.888;QD=8.54;ReadPosRankSum=-1.868;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:92,78:0.46:170
chr2	132277962	rs7560296	T	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-10.472;QD=3.03;ReadPosRankSum=-1.520;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:183,58:0.24:241
chr2	132277984	rs10209980	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-8.028;QD=2.66;ReadPosRankSum=-1.436;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:145,43:0.23:188
chr2	132286046	rs3101992	A	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=7.195;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-7.992;QD=1.22;ReadPosRankSum=-0.581;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:131,25:0.16:156
chr2	132286061	rs60469601	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-5.699;QD=1.79;ReadPosRankSum=-1.496;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:128,28:0.18:156
chr2	132287824	rs10187823	C	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:128,100:0.44:228
chr2	132288362	.	T	C	386	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=44.53;NF=5;NR=24;PP=386;QD=14.5093521568;SC=AGCCTCTCCATGTCAAGCTTC;SbPval=0.99;Source=Platypus;TC=103;TCF=39;TCR=64;TR=29;WE=132288370;WS=132288352;set=Platypus	GT:AD:AF:DP	1/0:74,29:0.28:103
chr2	132289473	.	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-0.431;QD=8.80;ReadPosRankSum=-0.431;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	132290318	rs149420878	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.76;MQRankSum=-1.990;QD=6.28;ReadPosRankSum=1.582;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr2	132290399	rs57007130	G	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr2	132290740	rs73957438	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	132491544	rs7599401	C	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	132494171	rs4850247	G	A	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	132494272	rs4850248	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.22;QD=27.58;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	132586836	rs199980894	A	AG	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr2	132586854	rs4558626	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr2	132586866	rs186960073	C	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	132586953	rs7370086	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.376;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	132587057	rs7369031	A	C	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	132591808	rs55998054	T	G	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:91,144:0.61:235
chr2	132591957	rs6710638	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr2	132592178	rs9751367	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	132593636	rs59199382	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:35,89:0.72:124
chr2	132593756	rs183153841	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr2	133014497	.	G	C	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-5.137;QD=16.38;ReadPosRankSum=1.606;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:130,97:0.43:227
chr2	133014504	rs79813268	G	T	3851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-5.303;QD=14.32;ReadPosRankSum=2.863;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:158,111:0.41:269
chr2	133014510	rs9287404	T	C	4672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.535;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-6.696;QD=16.51;ReadPosRankSum=2.877;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:155,128:0.45:283
chr2	133014592	.	G	A	3608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;ClippingRankSum=0.000;DP=1461;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-26.096;QD=2.47;ReadPosRankSum=-4.012;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:1155,304:0.21:1459
chr2	133014602	rs75245503	G	C	38298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;ClippingRankSum=0.000;DB;DP=1592;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-16.156;QD=24.12;ReadPosRankSum=-0.686;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:634,954:0.60:1588
chr2	133014612	rs74853538	A	C	41233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=1699;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-15.589;QD=24.33;ReadPosRankSum=-0.334;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:646,1049:0.62:1695
chr2	133014619	rs78327226	C	T	14987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=1796;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-25.071;QD=8.37;ReadPosRankSum=1.165;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:1348,442:0.25:1790
chr2	133014640	rs78867621	C	T	20391.77	.	AC=1;AF=0.500;AN=2;DB;DP=1894;set=Intersection	GT:AD:AF:DP	0/1:1306,582:0.31:1888
chr2	133014651	rs111708138	A	AC	43317.73	.	AC=1;AF=0.500;AN=2;DB;DP=1877;set=Intersection	GT:AD:AF:DP	0/1:629,1221:0.66:1850
chr2	133014657	rs113237573	G	A	20255.77	.	AC=1;AF=0.500;AN=2;DB;DP=1909;set=Intersection	GT:AD:AF:DP	0/1:1294,609:0.32:1903
chr2	133014678	rs72869462	A	G	49727.77	.	AC=1;AF=0.500;AN=2;DB;DP=1856;set=Intersection	GT:AD:AF:DP	0/1:571,1279:0.69:1850
chr2	133014703	rs72869464	T	C	48287.77	.	AC=1;AF=0.500;AN=2;DB;DP=1611;set=Intersection	GT:AD:AF:DP	0/1:442,1163:0.72:1605
chr2	133014721	rs72869465	T	C	42309.77	.	AC=1;AF=0.500;AN=2;DB;DP=1383;set=Intersection	GT:AD:AF:DP	0/1:356,1019:0.74:1375
chr2	133014751	rs75204936	T	C	6026.77	.	AC=1;AF=0.500;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	0/1:610,328:0.35:938
chr2	133014776	rs72869466	CA	TG	7832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.562;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.617;QD=12.20;ReadPosRankSum=0.110;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:422,220:0.34:642
chr2	133014786	rs72869468	G	A	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:361,214:0.37:575
chr2	133075726	rs2598810	A	G	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:149,122:0.45:271
chr2	133075904	rs113311843	C	CA	6690.73	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:238,261:0.52:499
chr2	133174764	rs2241764	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:164,91:0.36:255
chr2	133174999	rs2241763	A	G	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:411,194:0.32:605
chr2	133175152	rs34714906	C	T	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:542,254:0.32:796
chr2	133402607	rs1131671	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr2	133472385	rs11329925	CA	C	867.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=5.575;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.012;QD=4.72;ReadPosRankSum=1.764;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:90,94:0.51:184
chr2	133489401	rs17397142	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:187,87:0.32:274
chr2	133539460	rs6717116	A	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	133539566	rs6730282	G	A	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.006;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:167,71:0.30:238
chr2	133540176	rs2278752	A	G	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr2	133541444	rs12691829	T	C	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.422;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:67,56:0.46:123
chr2	133541454	rs12691830	A	G	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=0.735;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:75,58:0.44:133
chr2	133541575	rs12611515	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr2	133542014	rs12616282	T	C	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:174,100:0.36:274
chr2	133542545	rs10191147	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:215,91:0.30:306
chr2	133554288	rs1868076	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:194,84:0.30:278
chr2	133636236	.	TAC	T	379	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=21;MQ=59.6;NF=11;NR=2;PP=379;QD=30.0;SC=CACGCACGCATACACACACAC;SbPval=1.0;Source=Platypus;TC=46;TCF=23;TCR=23;TR=13;WE=133636245;WS=133636226;set=Platypus	GT:AD:AF:DP	0/1:33,13:0.28:46
chr2	133683658	rs2577634	G	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	134884700	rs6430498	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,51:0.36:140
chr2	135075378	rs3791280	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	135076111	rs4954134	C	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	135096097	rs7598410	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	135102453	rs3214771	TA	T	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	135102742	rs2290048	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	135214259	rs2289470	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:149,61:0.29:210
chr2	135470804	rs13399359	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr2	135602601	rs6430545	T	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	135602931	rs76638055	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr2	135629927	rs12469941	C	T	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	135676647	rs45575535	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr2	135677211	rs13390970	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.586;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	135677268	rs3769024	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	135677471	rs3841862	A	AGTTT	766.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr2	135694354	rs1823118	G	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.038;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr2	135694379	rs1374289	C	T	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	135700069	.	CTTA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	135700151	rs3816339	A	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	135703338	rs57267734	CT	C	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=7.055;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.396;QD=3.85;ReadPosRankSum=0.761;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:78,39:0.33:117
chr2	135705558	rs1979033	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	135710322	rs10166142	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	135711516	rs3814355	C	T	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr2	135711657	rs3814354	G	A	12072.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr2	135741061	rs12623713	G	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	135744139	rs139614326	T	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr2	135745129	rs16831235	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr2	135745392	rs11888766	G	A	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:194,112:0.37:306
chr2	135745545	rs11899779	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:144,83:0.37:227
chr2	135745722	rs10928526	A	G	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.145;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:276,135:0.33:411
chr2	135748872	rs144837592	AAAAAC	A	242.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	135762980	rs7606415	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:76,22:0.22:98
chr2	135781035	rs16831256	C	T	4375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.461;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:131,208:0.61:339
chr2	135890608	rs2305594	G	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.73;ReadPosRankSum=-0.639;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	135911422	rs17261772	T	C	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	135965376	rs7578111	T	C	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr2	135988127	rs59900519	T	A	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:65,148:0.69:213
chr2	135988186	rs58917764	G	A	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr2	135988416	rs935615	C	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,98:0.58:168
chr2	136107777	rs61744510	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr2	136107839	rs10496734	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=2.002;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	136407479	rs1446585	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:259,151:0.37:410
chr2	136409574	rs2305165	A	C	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:149,88:0.37:237
chr2	136418741	rs3769018	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr2	136467164	rs2304367	C	A	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	136511874	rs16831997	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:100,52:0.34:152
chr2	136511898	rs200764961	A	AT	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.232;QD=4.17;ReadPosRankSum=0.643;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:58,31:0.35:89
chr2	136527443	rs113881162	G	GTGAT	4142.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:48,103:0.68:151
chr2	136530248	rs58968019	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,11:0.22:51
chr2	136545844	rs1042712	C	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	136546110	rs2278544	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	136548169	rs892716	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	136548192	rs1808756	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	136555659	rs2322659	T	C	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:93,195:0.68:288
chr2	136558157	rs748841	C	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=0.203;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	136561557	rs2304371	G	A	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	136562472	rs3739022	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,59:0.39:153
chr2	136565028	rs10928549	C	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	136569848	rs12988076	C	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	136570613	rs3769011	A	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	136575199	rs6719488	G	T	8197.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:205,367:0.64:572
chr2	136575534	rs4954449	T	C	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	136590558	rs3754690	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.13;ReadPosRankSum=0.385;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	136594158	rs2236783	G	A	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:92,188:0.67:280
chr2	136610598	rs4988226	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	136614255	rs309180	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr2	136622825	rs309177	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	136633771	rs191079	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.470;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr2	136690414	rs34744196	TA	T	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.782;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr2	136740900	rs687670	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.022;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	136742939	rs2278681	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:76,40:0.34:116
chr2	136873549	rs2680880	A	T	1458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-0.251;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:31,73:0.70:104
chr2	137639616	rs1465612	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	137640006	rs11298935	CT	C	339.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	137814477	rs17727482	C	G	3322.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,157:0.62:254
chr2	137917738	rs58117107	A	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr2	137917763	rs57653701	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:105,73:0.41:178
chr2	137917922	rs4954474	T	A	6564.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:203,317:0.61:520
chr2	137990406	rs115032651	C	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,53:0.40:131
chr2	138000226	rs7605259	T	C	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr2	138030271	rs10182152	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr2	138033428	rs67227746	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=2.237;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr2	138163391	rs1551281	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	138169158	rs1463285	T	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	138208631	rs1453302	G	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	138237038	rs1584435	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	138320764	rs140559583	AT	A	1366.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,67:0.40:169
chr2	138378351	rs58339575	AG	A	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	138378388	rs1448922	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	138420996	rs10206850	A	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.391;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:55,37:0.40:92
chr2	138433966	rs79300562	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr2	138434130	rs61750799	A	G	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:502,230:0.31:732
chr2	138434220	rs78789846	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:224,85:0.28:309
chr2	139045438	.	GTTTT	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=-3.923;QD=14.36;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	139045444	rs11900034	T	A	297.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.984;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=3.923;QD=18.61;ReadPosRankSum=0.258;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	139045445	rs11900035	T	A	297.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.219;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=3.923;QD=18.61;ReadPosRankSum=0.206;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	139045972	rs6733578	T	C	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	139046301	rs12691943	A	G	19889.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,775:1.00:775
chr2	139046385	rs13382964	G	A	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	139308397	rs148464901	T	TTCTCTC	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.930;QD=18.49;ReadPosRankSum=0.619;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	139316934	rs11903991	G	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	139429068	rs10803570	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:263,120:0.31:383
chr2	140992337	rs13387241	C	A	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	141004513	rs11895946	C	T	130.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	141004529	rs2129483	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	141032088	rs1386356	C	T	2944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.307;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:148,154:0.51:302
chr2	141110440	rs16843835	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	141110677	rs13034302	C	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	141130548	rs13031631	T	C	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr2	141130695	rs16843864	C	T	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:124,193:0.61:317
chr2	141135863	rs34006829	T	TA	2136.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:80,111:0.58:191
chr2	141267744	rs1948051	T	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	141272253	rs61732738	C	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:324,148:0.31:472
chr2	141272413	rs115747094	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	141274576	rs4954672	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr2	141283401	rs13404083	T	A	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.598;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:196,110:0.36:306
chr2	141283603	rs1352047	T	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	141284041	rs7562323	A	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	141291498	rs16844175	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	141298467	rs6729619	A	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr2	141298682	rs11694934	G	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:148,71:0.32:219
chr2	141299317	rs9287535	A	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=1.630;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr2	141356125	rs114367995	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	141473505	rs4954852	A	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chr2	141474402	rs5834770	G	GA	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,33:0.36:91
chr2	141474456	rs1372255	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	141527013	rs13002947	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	141528435	rs13382825	T	C	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:83,55:0.40:138
chr2	141528592	rs7599219	T	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.849;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:69,37:0.35:106
chr2	141533662	rs996361	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.428;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	141571329	rs3749010	T	C	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	141571440	rs17575847	C	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	141571456	rs60071104	G	GA	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	141571480	rs17575875	A	G	70.88	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	141598473	rs35745624	A	AT	4888.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	141625834	rs34488899	TA	T	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.349;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr2	141707694	rs1980343	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	141709419	rs1429348	T	G	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr2	141762830	rs13413663	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	141771058	rs3791766	T	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	141771392	.	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.504;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	141816551	rs145931578	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.487;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr2	141816621	rs1525579	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	141945949	rs1249434	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	142356617	rs368401183	CCCCCG	C	907.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.30;ReadPosRankSum=0.896;SOR=3.841;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr2	142356630	rs147283574	C	T	1324.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.24;ReadPosRankSum=-0.370;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:5,52:0.91:57
chr2	142356635	rs144533069	C	G	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-0.185;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:15,51:0.77:66
chr2	142567737	rs4996425	G	A	872.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.09;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	142567910	rs12990449	T	C	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:68,130:0.66:198
chr2	142888376	rs1375610	G	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr2	143713710	.	TA	T	62	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=5;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=62;QD=48.0;SC=TAGTGTGACATAAAATGAACA;SbPval=1.0;Source=Platypus;TC=12;TCF=9;TCR=3;TR=2;WE=143713721;WS=143713700;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr2	143713713	.	A	T	61	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=61;QD=47.8856062736;SC=TGTGACATAAAATGAACAAAT;SbPval=1.0;Source=Platypus;TC=15;TCF=12;TCR=3;TR=2;WE=143713721;WS=143713700;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr2	143718459	rs34706877	T	TAAA	569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.185;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.660;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr2	143746494	rs10496935	C	G	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.924;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:29,72:0.71:101
chr2	143787274	rs6430000	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	143791014	rs2304700	G	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr2	143798189	rs9013	A	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr2	143913004	rs2580857	T	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	143973860	rs1451805	G	A	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	144764659	rs141458834	TAAG	T	871.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	144899559	rs3731958	C	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr2	144934655	rs5834992	A	AG	124.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	144934819	.	T	TAA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.043;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	145121339	rs10206546	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	145255210	rs12691693	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr2	145274732	rs147462449	C	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr2	147596973	rs4411641	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	148716446	rs2307396	A	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	148733548	rs2307399	T	TA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.583;QD=3.42;ReadPosRankSum=0.275;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	149240657	rs5835195	GT	G	966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.008;QD=4.65;ReadPosRankSum=-1.305;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:125,83:0.40:208
chr2	149449185	rs6724787	G	A	12558.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr2	149520214	rs10193313	C	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	149798034	rs192069289	G	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	149798512	rs13411910	G	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=0.698;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:20,41:0.67:61
chr2	149853960	rs6738277	A	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.568;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=7.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.366;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:35,42:0.55:77
chr2	150061121	.	GAGCCTCCTGGC	G	1738.73	.	AC=1;AF=0.500;AN=2;DP=206;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:132,53:0.29:185
chr2	150320627	rs34341723	TA	T	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.878;QD=5.77;ReadPosRankSum=-0.695;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr2	150427516	rs4500908	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.373;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	150432377	rs12232959	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.313;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	150432976	rs11545261	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.53;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	150433128	rs11680630	C	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.539;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	150443689	rs4667420	C	G	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:108,153:0.59:261
chr2	150443813	rs4667419	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr2	151328284	rs11338446	GA	G	2007.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.169;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.377;QD=14.76;ReadPosRankSum=0.597;SOR=0.452;set=HC	GT:AD:AF:DP	1/1:13,123:0.90:136
chr2	151343978	.	GAA	G	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=-0.729;QD=2.39;ReadPosRankSum=-1.525;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr2	151343988	rs2334309	A	T	399.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=0.000;QD=10.25;ReadPosRankSum=1.058;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	151857799	rs6709096	A	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:121,48:0.28:169
chr2	151900223	rs7589036	T	C	16507.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,636:1.00:636
chr2	151900390	rs150701043	TAAAAACAAAAAC	T	1837.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr2	152108261	rs4665119	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	152109159	rs289885	C	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	152112161	rs147060862	C	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.947;QD=4.77;ReadPosRankSum=1.048;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:266,118:0.31:384
chr2	152117780	rs2271811	T	C	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	152118271	rs55775354	G	A	12706.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.59;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	152118275	rs56376752	A	G	12941.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	152118338	rs35240993	G	GT	5390.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	152127169	rs41268703	C	T	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:53,102:0.66:155
chr2	152138522	rs3771886	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	152139271	rs10169816	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	152139416	rs1048135	G	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	152139493	rs10182245	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	152226570	rs1046668	A	G	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:72,190:0.73:262
chr2	152236045	rs35060021	TA	T	181.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	152266473	rs2290368	T	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:34,68:0.67:102
chr2	152266731	rs2290367	T	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	152267072	rs4664045	T	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:72,107:0.60:179
chr2	152267672	rs7585604	G	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	152267721	rs66862523	AT	A	340.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	152267897	.	G	GTTT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.566;QD=3.92;ReadPosRankSum=-0.736;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	152289767	rs72860233	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	152292169	rs34105266	GA	G	1620.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr2	152303171	rs2432941	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	152311570	rs2444263	G	A	10704.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr2	152314547	rs35044903	C	CA	50.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	152315549	rs2444260	G	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	152320118	rs2123465	G	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	152322095	rs2444257	A	T	7410.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	152331364	.	CTT	C	244.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	152331418	rs1065177	C	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	152346979	rs1061305	T	C	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	152348842	rs2288193	T	A	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	152349026	rs2288195	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	152350462	rs4664455	T	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	152350903	rs112383145	G	GTA	140	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.00;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	152352843	rs7575451	C	G	8109.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr2	152353395	rs10497081	T	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	152360136	rs3835058	AT	A	66	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	152362883	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr2	152369117	rs13023600	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	152371514	.	G	GA	45.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	152374800	rs16830136	G	A	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:58,91:0.61:149
chr2	152382454	rs6721666	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr2	152383913	rs2288198	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr2	152387553	rs4664475	T	C	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:99,147:0.60:246
chr2	152388228	rs60806638	G	C	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:141,292:0.67:433
chr2	152388415	rs56026241	AT	A	919.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr2	152394534	rs3732310	T	G	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr2	152396726	rs66541369	T	TA	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr2	152402515	rs10687343	T	TAA	741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.804;QD=10.30;ReadPosRankSum=-0.126;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:26,46:0.64:72
chr2	152403014	rs4664486	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr2	152403071	rs11436330	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.120;QD=4.29;ReadPosRankSum=-2.000;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	152404294	rs2288201	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr2	152409416	rs2288203	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr2	152409809	rs4575719	C	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	152417311	rs3214502	T	TC	1469.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr2	152421937	rs7602715	A	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr2	152422076	rs2288210	C	G	4274.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:115,199:0.63:314
chr2	152424933	rs3214503	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.293;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	152427249	rs7568873	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	152473986	.	CA	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.246;QD=5.03;ReadPosRankSum=-1.065;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	152475938	rs10186656	T	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	152476028	rs10172023	C	G	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr2	152481977	rs10186482	A	G	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	152490219	rs6709886	A	G	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:100,193:0.66:293
chr2	152490458	rs6710212	A	G	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	152527572	rs7426114	C	T	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	152531077	rs6711382	A	G	10585.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,416:1.00:417
chr2	152536498	rs6735208	T	A	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	152544153	rs189623595	T	C	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:293,141:0.32:434
chr2	152552062	rs6433569	A	C	13952.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr2	152566433	rs12464543	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	152573902	rs34733773	A	AGGC	7934.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	152573981	rs4611637	A	G	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	152581866	rs4300824	T	C	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	152584153	rs4664499	A	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	152684704	rs150910136	A	AC	4114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=16.14;ReadPosRankSum=0.274;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:76,179:0.70:255
chr2	152695896	rs143442080	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.665;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:69,42:0.38:111
chr2	152709810	rs13397345	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	152717071	rs12693154	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	152725937	rs3768652	C	A	346.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	152729138	rs770609	T	C	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	152827973	rs7567588	A	G	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	152828281	rs7607341	C	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	153000337	rs12617139	T	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr2	153004736	rs72864741	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr2	153192324	rs2003332	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	153378459	rs4664114	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	153378574	rs4664592	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=9.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.355;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr2	153378652	rs4664593	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=0.095;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	153405594	rs1155779	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=1.516;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr2	153415170	rs6705427	A	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	153415229	.	A	AT	650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.05;MQRankSum=-7.333;QD=4.93;ReadPosRankSum=1.118;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:74,58:0.44:132
chr2	153415234	rs200953857	T	TG	1840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=63.91;MQRankSum=11.265;QD=13.53;ReadPosRankSum=-2.053;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:83,53:0.39:136
chr2	153415244	rs72868279	T	C	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.85;MQRankSum=11.783;QD=12.91;ReadPosRankSum=-1.953;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:91,57:0.39:148
chr2	153415376	rs6434098	T	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:160,103:0.39:263
chr2	153417325	rs6713836	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-1.529;QD=3.90;ReadPosRankSum=0.958;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	153435288	rs12693407	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	153435434	rs16831399	C	T	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:51,109:0.68:160
chr2	153473435	rs7596408	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.49;ReadPosRankSum=-1.344;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	153476066	rs5835439	G	GCCA	10076.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	153478931	rs7609122	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	153481943	rs2346532	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	153483257	rs7604573	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	153484685	rs3811570	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	153492910	rs1561267	G	T	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	153497168	rs1465818	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	153514583	rs6713779	G	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	153519524	rs1036526	A	G	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	153520782	rs3762507	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	153520819	rs3762506	C	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	153529361	rs2304559	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	153535670	rs10166987	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	153549814	rs10172024	G	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	153572438	rs2346548	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	4834.73	.	AC=2;AF=1.00;AN=2;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.40;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	153577013	rs9646744	G	A	7415.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	155265623	rs1405936	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr2	155306885	rs697648	C	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	155555195	rs5835535	T	TC	1697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.205;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:57,66:0.54:123
chr2	157183211	rs35479735	TC	T	4809.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	157189011	rs834836	G	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	157352734	.	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.376;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr2	157358386	rs74938054	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.507;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	157370017	rs142447636	TG	T	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.689;QD=1.62;ReadPosRankSum=0.427;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr2	157406296	rs2116664	A	C	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	157414127	rs75250627	G	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:35,84:0.71:119
chr2	157425502	rs36082652	C	CT	406.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.624;QD=8.84;ReadPosRankSum=0.000;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	157425931	rs35096779	A	C	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.731;QD=13.54;ReadPosRankSum=0.521;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:42,75:0.64:117
chr2	157427593	rs1469652	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	157427837	rs1469651	C	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	157427850	rs1469650	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr2	157435346	rs144803882	G	GA	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	157435524	rs113498402	TAA	T	1269.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr2	157467040	rs11892929	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	157467106	rs11894134	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr2	158115129	rs61748237	A	T	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:106,160:0.60:266
chr2	158140806	rs6759356	G	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	158141071	rs714648	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	158141092	rs714649	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	158157361	rs3214040	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr2	158162475	rs3214039	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr2	158162521	rs3816595	T	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	158165004	rs6728956	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	158180780	rs191439630	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.050;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.672;QD=1.44;ReadPosRankSum=-0.109;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr2	158180784	.	CA	C	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.775;QD=8.72;ReadPosRankSum=0.131;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	158275111	rs5835667	T	TA	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=2.408;QD=5.17;ReadPosRankSum=-0.109;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr2	158283710	rs155614	A	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	158284056	rs155613	C	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	158291107	rs70987792	T	TAG	357.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=0.639;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	158291188	rs11904180	A	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	158291324	.	ATCTC	A	33	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.4999;HP=2;HapScore=2;MGOF=29;MMLQ=27;MQ=58.11;NF=1;NR=0;PP=33;QD=36.0;SC=AATGTTCTAAATCTCTCTCTC;SbPval=0.1;Source=Platypus;TC=10;TCF=1;TCR=9;TR=1;WE=158291335;WS=158291314;set=Platypus	GT:AD:AF:DP	1/0:9,1:0.10:10
chr2	158390468	rs7594480	T	C	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.050;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:63,107:0.63:170
chr2	158390652	.	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.835;QD=3.22;ReadPosRankSum=0.342;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	158395079	rs7576514	C	G	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.021;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:103,138:0.57:241
chr2	158397523	rs76224828	G	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr2	158397792	rs201906258	ATAAAT	A	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	158400908	rs6728987	C	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	158401137	rs10432556	T	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr2	158406966	rs77945557	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr2	158443889	rs4556933	G	A	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	158626980	rs1146031	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:180,104:0.37:284
chr2	158630811	rs73022059	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr2	158637132	.	A	AG	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=3.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.905;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr2	158637137	rs1866885	A	G	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.949;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:50,61:0.55:111
chr2	158655883	rs3030646	C	CA	491.94	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:4,27:0.87:31
chr2	158958435	rs112996000	C	G	127.94	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	158958605	rs6710480	G	T	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=-0.851;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,91:0.76:120
chr2	158958767	rs6713525	G	A	123.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	158971664	rs7561584	A	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,55:0.38:145
chr2	158978178	rs10804389	C	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	159028800	rs2222390	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	159166069	rs7559772	T	C	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	159195282	rs16842890	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr2	159196771	rs12620556	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr2	159201633	rs7568454	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:118,58:0.33:176
chr2	159214901	rs13394731	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr2	159222561	rs13401538	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	159312733	rs1111212	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	159434492	rs2356188	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	159514812	rs8272	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr2	159517704	rs10633217	C	CCATGCA	4841.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	159517857	rs9459	C	T	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:383,191:0.33:574
chr2	159520085	rs3771679	G	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	159522879	rs2248854	C	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	159526188	rs73006934	C	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr2	159530546	rs116277552	C	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:195,93:0.32:288
chr2	159534863	rs2356505	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	159534874	rs2356506	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	159534889	rs2711040	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	159534932	rs147823604	A	AT	3892.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	159661077	rs2271663	C	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	159663599	rs9869	T	C	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	159663691	rs10207833	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr2	159672442	rs10016	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	160019863	rs12466551	A	G	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	160019901	rs55929944	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:62,86:0.58:148
chr2	160033174	rs759034	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	160034919	rs4665031	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	160035207	rs6748288	T	C	13444.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:1,514:1.00:515
chr2	160042430	rs13389867	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:307,136:0.31:443
chr2	160043572	rs73967217	C	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr2	160055448	rs13430891	T	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.409;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:92,47:0.34:139
chr2	160073881	rs1035058	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.265;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	160075645	rs10490005	A	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	160075684	rs13403166	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.902;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr2	160075711	rs13416694	T	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.390;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr2	160076140	rs10490004	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr2	160076309	rs11903200	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	160082331	rs17604591	G	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:158,73:0.32:231
chr2	160082354	rs12692544	C	T	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	160082384	rs13419975	T	A	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	160084224	rs2042494	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	160084236	rs13413691	G	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.966;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	160084263	rs2042495	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	160084473	rs2288110	A	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	160084534	rs2288111	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	160085287	rs73967254	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr2	160085566	rs73967256	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	160086468	rs13421084	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:229,130:0.36:359
chr2	160086653	rs4664276	C	T	2438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=2.041;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:316,145:0.31:461
chr2	160086653	.	CA	TG	807	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=24;MQ=60.0;NF=34;NR=37;PP=807;QD=12.1192658431;SC=GAATCGCTGCCACTCCTGCTG;SbPval=0.61;Source=Platypus;TC=242;TCF=119;TCR=123;TR=71;WE=160086662;WS=160086643;set=Platypus	GT:AD:AF:DP	0/1:171,71:0.29:242
chr2	160086654	rs55738533	A	G	14857.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.02;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	160086692	rs3821296	A	G	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:327,150:0.31:477
chr2	160087535	rs3821301	T	G	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	160092757	rs7609153	C	A	166.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	160105007	rs13407368	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-1.166;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:140,79:0.36:219
chr2	160112881	rs7591849	G	T	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	160114186	rs13395766	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr2	160114315	rs3815475	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:220,103:0.32:323
chr2	160114437	rs3213715	G	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	160116291	rs10196279	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.666;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr2	160128202	rs11891627	A	C	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=1.365;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:141,79:0.36:220
chr2	160128343	rs11902271	C	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr2	160132089	rs16843852	T	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr2	160132196	rs35620648	A	AC	298.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr2	160136214	rs13399245	T	C	83.88	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	160136337	rs174264	G	A	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	160139138	rs59586856	A	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr2	160139284	rs73968307	A	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:62,108:0.64:170
chr2	160176943	rs174229	A	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	160182074	rs440241	T	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	160182142	rs59547500	T	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.420;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	160193370	rs2287634	T	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	160203934	rs965163	A	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	160205145	rs73967820	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	160206214	rs16843906	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr2	160231317	rs73967854	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	160231357	rs77906701	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	160243183	rs918351	TA	AT	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr2	160261729	rs74694096	AC	A	567.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	160295297	rs2302923	C	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	160304741	rs12470533	A	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr2	160585740	rs3821299	C	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	160604812	rs1427329	C	T	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	160605268	rs1365803	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	160605488	rs371758273	TC	T	79.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.39;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	160605491	.	T	C	88.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.10;ReadPosRankSum=1.242;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	160619304	rs16844308	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	160621354	rs5835760	G	GT	279.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.793;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr2	160634564	rs5835761	ACC	A	222.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	160634582	rs148276105	TAATATC	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	160637324	rs2303551	A	G	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	160639970	rs2114626	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	160654790	rs111456791	G	T	908.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.66;ReadPosRankSum=0.046;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	160654804	rs146923392	T	TC	748.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.65;ReadPosRankSum=-1.021;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr2	160663678	rs7566887	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	160664907	rs2556088	T	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:3,114:0.97:117
chr2	160676350	rs17827158	T	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.592;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-1.281;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:39,79:0.67:118
chr2	160676427	rs12692566	C	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=26.16;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	160676445	rs36120198	A	AT	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=24.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	160688351	rs6755783	C	T	279.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	160690646	rs6722188	T	C	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.150;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:106,58:0.35:164
chr2	160698700	rs41265133	A	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr2	160706432	rs114002324	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr2	160706718	rs147952165	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	160708933	rs72158678	GT	G	103.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.140;QD=11.50;ReadPosRankSum=-1.593;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	160709739	rs199647704	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr2	160710922	rs2729705	T	C	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	160711045	rs3951216	G	C	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:53,94:0.64:147
chr2	160711556	rs975490	T	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr2	160729134	rs1397705	A	C	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr2	160735775	rs77761086	C	T	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-1.420;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:87,116:0.57:203
chr2	160737495	rs2729712	A	C	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	160737560	rs2729711	G	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr2	160737717	rs79199281	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr2	160737819	rs114668937	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.54;ReadPosRankSum=-0.566;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	160738803	rs35675007	G	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:116,163:0.58:279
chr2	160738873	rs114527044	G	A	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,75:0.65:115
chr2	160742771	.	A	G	30	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=30;QD=21.5904041824;SC=CAATAACAGTACCACAATTAA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=160742779;WS=160742761;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	160743040	rs2271381	T	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.399;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr2	160761082	rs6760195	T	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr2	160761136	rs35284483	A	G	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr2	160805993	rs6726923	C	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160825953	rs2175414	G	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.603;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:87,38:0.30:125
chr2	160826637	rs2136972	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=1.050;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:62,31:0.33:93
chr2	160833188	rs2715918	A	G	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	160862118	rs73967981	G	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	160869942	rs73967982	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr2	160872990	.	G	GGC	1363.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr2	160872991	rs34555459	T	G	2087.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	160873021	rs2715939	G	A	2866.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.358;QD=24.71;ReadPosRankSum=-0.487;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:3,113:0.97:116
chr2	160873270	rs2667040	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	160873294	rs3833577	T	TA	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	160876827	rs1511213	A	G	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	160884959	rs115285905	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	160901403	rs35005192	C	T	6407.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:164,304:0.65:468
chr2	160901517	rs4665143	A	G	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:95,136:0.59:231
chr2	160918984	rs925409	T	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	160919040	rs11285500	AC	A	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160958349	rs201103445	GAA	G	1066.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr2	160994764	rs76007773	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	160998792	rs3755547	A	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	161028992	rs1037694	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	161051853	rs2124971	A	G	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr2	161169828	rs10929977	C	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-3.931;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr2	161174693	rs1430	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.52;ReadPosRankSum=-0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	161797329	rs1524626	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	161797513	rs1524625	A	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:77,98:0.56:175
chr2	162175290	rs1116165	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	162224193	rs58162668	G	GT	2326.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	162247772	rs1921674	C	T	227.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.78;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	162274607	.	A	ATG	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.373;QD=12.56;ReadPosRankSum=0.604;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	162280748	rs890076	G	A	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	162833452	rs113410565	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr2	162849944	rs57794116	T	TA	1267.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chr2	162865823	rs75278801	A	T	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:92,143:0.61:235
chr2	162873188	rs2970931	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	162875641	rs140360804	ATTAG	A	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	162875843	rs2111849	C	A	802.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.097;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:5,36:0.88:41
chr2	162876813	.	GTT	G,GTTT	310.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=1.273;SOR=0.716;set=HC	GT:AD:AF:DP	1/2:11,12,15:0.32,0.39:38
chr2	162876828	rs35175377	CA	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-2.029;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	162876985	rs78191208	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.46;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	162877400	rs16846261	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-2.697;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	162890175	rs1558957	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	162891848	rs6432708	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	162903783	rs149913490	GA	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.574;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	163051415	rs1468916	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	163054724	rs4664452	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:161,86:0.35:247
chr2	163054796	rs73973041	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr2	163055194	rs73973042	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:81,54:0.40:135
chr2	163128725	rs3747518	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.248;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr2	163128824	rs3747517	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.126;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:160,40:0.20:200
chr2	163128883	rs13418718	G	A	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.827;QD=2.79;ReadPosRankSum=-0.378;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:215,65:0.23:280
chr2	163128977	rs113492936	C	CA	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,31:0.27:114
chr2	163133106	rs76054377	C	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr2	163137753	rs73973094	A	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	163137871	rs12479043	C	G	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:204,112:0.35:316
chr2	163137983	rs10930046	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,39:0.31:126
chr2	163138844	rs11441874	A	AT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.449;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	163149965	rs4664463	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr2	163216109	rs3213843	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	163241287	rs6757850	C	G	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	163291617	rs12104705	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	163694878	rs4667768	C	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr2	164467487	rs2231903	T	A	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.194;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:61,123:0.67:184
chr2	165349459	rs1051160	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	165353712	rs8192673	C	T	12389.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr2	165383686	.	AATATATAT	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.63;ReadPosRankSum=-1.383;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	165476253	rs61748245	A	T	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:233,148:0.39:381
chr2	165477903	rs62173895	G	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr2	165544450	rs6738627	G	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	165551404	rs17244632	G	A	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:85,155:0.65:240
chr2	165552222	rs116305649	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,47:0.36:130
chr2	165557318	rs6712203	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	165559843	rs73013656	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	165561765	rs6738916	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=1.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	165578581	rs6414069	A	G	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr2	165579065	rs10167778	T	G	351.78	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	165584407	rs12692743	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	165586466	rs13392281	T	C	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-0.536;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	165586652	rs13432439	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr2	165586705	rs13395130	T	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	165630460	rs355865	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	165636332	rs355897	T	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr2	165657118	rs75458208	A	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr2	165657142	rs7588491	A	C	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,26:0.90:29
chr2	165698547	rs2279982	G	A	4370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=0.014;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:151,213:0.59:364
chr2	165698715	rs71028447	A	AG	847.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	165809138	.	ATG	A	53	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=1;MGOF=75;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=53;QD=20.0;SC=CAGTTGCAGCATGTGTGTGTG;SbPval=0.43;Source=Platypus;TC=20;TCF=11;TCR=9;TR=3;WE=165809147;WS=165809128;set=Platypus	GT:AD:AF:DP	1/0:17,3:0.15:20
chr2	165809426	rs17353791	T	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr2	165811554	rs11350253	GA	G	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.786;QD=6.41;ReadPosRankSum=0.099;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	165996107	rs1946892	T	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:172,108:0.39:280
chr2	166012203	rs3731760	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	166032775	rs72471101	CATT	C	3012.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:162,85:0.34:247
chr2	166153499	rs7593568	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	166167166	rs7560348	T	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	166170127	rs2121371	T	C	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	166172317	rs1838846	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	166221569	rs3835933	TG	T	836.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr2	166221883	rs67174953	GTATC	G	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	166224047	rs2304010	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	166229922	rs6432821	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	166234076	rs1864885	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	166237060	rs75109281	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.371;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr2	166514594	rs10803800	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	166535918	rs777346	C	T	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr2	166610972	rs67722214	CA	C	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	166611006	rs62174818	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr2	166611086	rs41268661	C	T	2530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-2.849;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:48,120:0.71:168
chr2	166618262	rs1968294	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	166621344	rs202086465	T	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.509;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.628;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	166621354	rs2113840	T	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.22;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	166758447	.	T	TA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=4.166;QD=0.91;ReadPosRankSum=1.924;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr2	166770071	rs73969727	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr2	166770120	rs10176588	A	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	166771663	rs7590559	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	166773971	rs6750044	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	166781242	rs58208220	T	TA	775.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr2	166788336	rs7592429	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:84,145:0.63:229
chr2	166799596	rs13000534	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	166799893	rs10930190	G	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr2	166810161	.	G	GCCCGCTCA,GCCCGCTCACCCGCTCACCCGCTCA	4599.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.18;MQRankSum=-0.088;QD=31.51;ReadPosRankSum=1.535;SOR=0.985;set=HC	GT:AD:AF:DP	1/2:6,105,35:0.72,0.24:146
chr2	166810360	rs111867313	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr2	166810373	rs1347041	A	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	166810433	rs5836068	GT	G	730.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	166852346	rs138116101	TTTAA	T	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	166868775	rs36031496	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr2	166892444	rs34673057	TAAA	T	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.136;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=-1.235;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	166892448	rs114707732	A	T	67.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.085;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	166892788	rs2298771	C	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.356;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:94,48:0.34:142
chr2	166893081	rs7601520	G	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	166894165	rs373900785	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.529;QD=2.81;ReadPosRankSum=0.148;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	166894230	rs2020318	T	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:98,69:0.41:167
chr2	166896143	rs2126152	T	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	166897864	rs6432860	A	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.200;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:83,45:0.35:128
chr2	166898785	rs59251406	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr2	166900606	rs6753355	A	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	166903188	rs538921	A	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	166904346	rs1461193	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:98,47:0.32:145
chr2	166930214	rs566839	T	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	167060449	rs10180721	A	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	167085124	rs10199799	T	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=1.635;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	167085141	rs58519838	CTT	C	5203.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	167090042	rs722204	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	167099158	rs6746030	A	G	7833.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	167129466	rs35476363	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr2	167133929	rs71428907	G	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	167134578	rs10930215	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	167137119	rs6432893	G	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	167137261	rs13007020	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	167138320	rs35888674	T	TA	3369.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:12,167:0.93:179
chr2	167138389	rs34570325	C	CT	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	167140955	rs7608201	G	A	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	167143210	rs9917401	C	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	167144974	rs6747673	A	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	167149693	rs7588632	G	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.71;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	167149693	.	GTACATAT	ATACATAC,ATACATAT	380	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=19,35;NR=5,15;PP=380,321;QD=18.0611614526;SC=CATACACCAGGTACATATGCC;SbPval=0.86;Source=Platypus;TC=50;TCF=35;TCR=15;TR=24,50;WE=167149708;WS=167149683;set=Platypus	GT:AF:DP	0/1:0.48:50
chr2	167149700	rs41268675	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.688;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr2	167151290	rs36090076	A	G	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	167162277	rs4429487	G	A	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:117,226:0.66:343
chr2	167163043	rs9646771	T	C	2123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.091;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:60,103:0.63:163
chr2	167163199	rs9646772	A	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	167163372	rs4583483	T	C	169.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.86;ReadPosRankSum=0.140;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	167163372	.	TC	CA	99	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=99;QD=50.8226249541;SC=CCAGAGTCTTTCAAGGTGCAA;SbPval=1.0;Source=Platypus;TC=7;TCF=5;TCR=2;TR=3;WE=167163381;WS=167163362;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr2	167163373	rs4443015	C	A	169.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.86;ReadPosRankSum=0.140;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	167163663	rs4447616	C	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	167168093	rs6432901	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr2	167269261	rs143949205	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	167279922	rs6738031	C	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	167284520	rs3748895	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	167297887	rs141427388	A	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr2	167313313	rs67265532	AATAT	A	82.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	167322522	rs7593452	G	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr2	167327064	rs12992062	A	G	128.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.31;ReadPosRankSum=-0.549;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	167328750	rs2293567	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr2	167334085	rs7565062	G	T	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-0.185;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:38,58:0.60:96
chr2	167759948	rs7599152	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr2	167760451	rs5836125	AG	A	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr2	168996775	rs2278785	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr2	168997097	rs2278784	A	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr2	168997311	rs114516111	T	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr2	169103871	.	CGCCGCCGCCGCTGTCACCGGG	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.88;ReadPosRankSum=2.200;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	169674655	rs830026	T	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	169674663	rs830025	A	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	169674764	rs830024	C	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	169681278	rs11374385	T	TTTTGTTTGTTTG	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;QD=42.99;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	169690729	rs522893	T	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	169699790	rs116802367	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	169707428	rs540652	C	T	4235.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:105,199:0.65:304
chr2	169707552	rs488621	A	G	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	169712115	.	C	CAA	94.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.49;ReadPosRankSum=0.126;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	169713084	rs11385898	T	TA	2272.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:14,126:0.90:140
chr2	169717541	rs2632372	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr2	169718301	rs10497348	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	169721377	rs479661	G	A	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	169727879	rs61598834	G	GA	473.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	169728069	.	GAAA	G	2296.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.210;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.29;ReadPosRankSum=2.826;SOR=0.554;set=HC	GT:AD:AF:DP	1/1:3,66:0.96:69
chr2	169728171	rs142563594	A	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	169763148	rs560887	T	C	10234.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.69;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	169763148	.	TG	CA,CG	1260	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=59.99;NF=23,66;NR=23,66;PP=463,1260;QD=11.227562497;SC=TTGCTTTTTATGCTTGTATCT;SbPval=0.54;Source=Platypus;TC=132;TCF=66;TCR=66;TR=46,132;WE=169763157;WS=169763138;set=Platypus	GT:AF:DP	0/1:0.35:132
chr2	169763149	rs2232321	G	A	1662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.478;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:220,104:0.32:324
chr2	169764176	rs492594	G	C	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	169764546	rs2232328	C	G	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr2	169780366	rs579275	T	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr2	169789016	rs497692	T	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:89,139:0.61:228
chr2	169791595	rs61587142	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr2	169791971	rs73016685	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,39:0.28:138
chr2	169801403	rs11568373	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr2	169801488	rs853789	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	169801501	rs201279156	T	TTTG	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	169801516	rs150268006	AAAAT	A	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	169814347	rs853773	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	169814655	rs853772	G	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	169824739	rs4148789	T	TA	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	169824743	rs2389613	C	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.68;ReadPosRankSum=1.001;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	169824749	rs28405534	C	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.52;ReadPosRankSum=0.577;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	169826877	rs2193831	C	T	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:77,145:0.65:222
chr2	169828325	rs2241340	A	G	522.78	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr2	169830051	rs2389605	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	169830155	rs2287623	G	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:79,121:0.60:200
chr2	169830328	rs2287622	A	G	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:53,68:0.56:121
chr2	169830443	rs55669065	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-0.585;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	169842809	rs2287618	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr2	169853118	rs373921973	T	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,26:0.27:97
chr2	169853319	.	A	AAT	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.748;QD=26.30;ReadPosRankSum=1.694;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr2	169997051	rs990626	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr2	170003575	rs114936025	G	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr2	170010985	rs2075252	T	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:92,46:0.33:138
chr2	170018934	rs115425860	G	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:157,76:0.33:233
chr2	170029800	rs17848190	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,45:0.37:121
chr2	170030639	rs144081819	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr2	170032879	rs116379597	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr2	170050472	rs2075248	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	170053505	rs2228171	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,83:0.70:118
chr2	170053580	rs2302696	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr2	170055255	rs16823023	T	C	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:77,141:0.65:218
chr2	170055432	rs11898106	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:134,56:0.29:190
chr2	170058497	rs16856600	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	170059190	rs2239599	T	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	170070128	rs114072720	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	170076880	rs116671969	A	T	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:125,76:0.38:201
chr2	170082013	rs2075246	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr2	170083033	rs116456291	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.012;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:123,51:0.29:174
chr2	170088351	rs2302694	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr2	170089824	rs2239596	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	170092395	rs2229267	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:220,97:0.31:317
chr2	170092613	rs74457112	C	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.273;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr2	170094519	rs115228222	C	T	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.657;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr2	170096095	rs34915742	C	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:154,71:0.32:225
chr2	170096291	rs76714416	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr2	170099446	rs831041	T	G	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:315,161:0.34:476
chr2	170099473	rs831042	T	C	3669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-2.279;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:387,216:0.36:603
chr2	170099895	rs2075255	A	C	3408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-3.473;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:146,89:0.38:235
chr2	170099899	rs2075254	G	A	3433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-2.773;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:159,98:0.38:257
chr2	170103336	rs831043	T	C	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:211,113:0.35:324
chr2	170103351	rs2075249	G	T	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:199,110:0.36:309
chr2	170115588	rs2241190	T	C	3325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.460;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:389,204:0.34:593
chr2	170129528	rs830994	G	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:245,94:0.28:339
chr2	170129636	rs830995	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:95,46:0.33:141
chr2	170134191	rs831003	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	170139346	rs831010	C	T	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	170139639	rs831011	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	170150573	rs2389588	G	C	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:192,112:0.37:304
chr2	170163768	rs2247506	T	C	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:129,185:0.59:314
chr2	170175334	rs2229263	T	C	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:111,213:0.66:324
chr2	170177510	rs116665860	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	170218816	rs1559013	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	170218847	rs1559014	C	G	5403.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	170336024	rs1879466	G	C	8607.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	170336102	rs10188609	C	G	2549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-1.781;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:244,144:0.37:388
chr2	170339003	rs2353187	C	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	170343413	rs115739996	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	170344523	rs6752540	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr2	170349498	rs75690869	T	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.301;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr2	170355944	rs12692909	A	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	170356269	rs76384868	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=-0.608;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	170374764	rs34623017	A	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:187,88:0.32:275
chr2	170393925	rs2683423	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	170394487	rs2290005	T	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr2	170403030	rs2253680	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:44,82:0.65:126
chr2	170411485	rs2592823	C	A	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	170411693	rs2683455	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	170413601	rs2592824	A	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	170413897	rs56157235	G	GA	130.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	170425523	rs2683446	A	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.452;QD=14.32;ReadPosRankSum=0.201;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	170463551	rs2592813	T	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=1.356;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr2	170465125	rs79028989	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	170492584	rs2290008	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.328;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	170506894	rs139617634	TTTTCTC	T	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.871;QD=6.46;ReadPosRankSum=-1.546;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr2	170537613	rs61754886	T	C	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.018;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:202,123:0.38:325
chr2	170605981	rs4667607	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	170606476	.	CAT	C	185	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=90;MMLQ=25;MQ=57.63;NF=1;NR=5;PP=185;QD=35.3333333333;SC=TATATGTATACATATATATGT;SbPval=0.66;Source=Platypus;TC=6;TCF=1;TCR=5;TR=6;WE=170606485;WS=170606466;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	170606496	.	C	CGTAT	189	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9998;HP=1;HapScore=2;MGOF=80;MMLQ=28;MQ=55.66;NF=0;NR=2;PP=189;QD=109.5;SC=TGTATATATACGTATGTATAC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=170606504;WS=170606486;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	170606588	.	A	G	219	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=2;MGOF=80;MMLQ=21;MQ=55.95;NF=8;NR=4;PP=219;QD=21.1476010456;SC=ATATATACGTATGTATGTATA;SbPval=0.61;Source=Platypus;TC=12;TCF=8;TCR=4;TR=12;WE=170606596;WS=170606578;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	170606658	rs1469355	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	170606724	rs10164599	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr2	170632960	rs150673586	C	CA	3528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=0.889;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:44,95:0.68:139
chr2	170632969	rs55969365	C	A	3823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=0.285;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:48,99:0.67:147
chr2	170633023	rs11422611	T	TA	2686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=-0.604;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:63,88:0.58:151
chr2	170633067	rs6745191	G	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,88:0.62:141
chr2	170633103	rs11325477	GA	G	1142.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr2	170657670	rs187187942	A	G	253.56	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr2	170677837	rs59311986	AC	A	391.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=0.151;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr2	170684593	rs115491675	A	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr2	170762487	rs10171268	C	T	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	170762566	rs10194785	A	T	11202.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:2,442:1.00:444
chr2	170782037	rs1461958	C	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	170784004	rs6723655	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	170784049	rs898851	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	170785484	rs10165565	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	170821010	rs10197085	A	G	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	170850738	rs1461959	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	170871950	rs16857446	T	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170871976	rs13028230	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	170911950	rs6741614	T	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr2	170917648	rs10203212	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	170917983	rs35032863	CT	C	2079.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.813;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.528;QD=15.07;ReadPosRankSum=-0.654;SOR=1.020;set=HC	GT:AD:AF:DP	1/1:15,123:0.89:138
chr2	170929880	rs10202446	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	171055942	rs35521414	T	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr2	171056569	rs6756347	T	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	171070810	rs67994603	G	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:88,32:0.27:120
chr2	171070850	rs13423313	G	T	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:63,150:0.70:213
chr2	171070912	rs13385825	T	C	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:70,169:0.71:239
chr2	171071369	rs4667626	C	T	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	171073887	rs2161916	G	A	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	171092445	rs1035625	A	G	87.94	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	171192084	rs12466203	G	A	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	171225841	rs4668246	A	G	5556.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:136,267:0.66:403
chr2	171239556	rs200521411	C	CT	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=0.179;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	171239826	rs78111425	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	171240217	rs146172688	C	T	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=0.182;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:118,69:0.37:187
chr2	171240358	rs148409407	C	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:150,80:0.35:230
chr2	171240420	rs75398889	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr2	171256597	rs7561268	A	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	171256912	.	CT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.543;QD=1.31;ReadPosRankSum=0.524;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	171257945	rs7568041	A	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr2	171260708	rs10930425	C	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	171260787	rs6736609	G	A	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	171260820	rs6751520	T	C	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	171261021	rs6751781	T	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA,TGCTCTGGATATGAAAGCTCTGGATATGAAA	937.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/2:0.53,0.47:19
chr2	171264179	rs72876321	C	T	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-0.794;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:191,102:0.35:293
chr2	171300648	rs4667639	T	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,47:0.39:121
chr2	171319997	rs12477518	A	C	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:83,163:0.66:246
chr2	171323280	rs67549561	CTGTGTCCTAAGAT	C	841.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr2	171323328	rs4359605	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.021;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	171355198	rs6761297	A	G	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	171355329	rs6733198	G	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	171356274	rs10185178	G	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	171356423	rs9752383	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	171358211	rs7593940	G	A	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	171358474	rs7608168	T	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	171508262	rs6724627	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:129,93:0.42:222
chr2	171508490	rs10718459	CA	C	827.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	171509700	rs13382220	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr2	171570488	rs7563812	C	G	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:36,98:0.73:134
chr2	171572940	rs3749036	G	A	10286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=2.342;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:171,468:0.73:639
chr2	171627676	rs1861462	T	G	5803.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:160,272:0.63:432
chr2	171632225	rs17694506	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	171632385	rs10626619	C	CTT	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=-0.033;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr2	171632401	rs13028382	C	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.009;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr2	171634347	rs11334749	TA	T	3467.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:49,100:0.67:149
chr2	171649402	rs3764916	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.934;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	171654663	rs2287111	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	171705157	rs35403424	AT	A	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr2	171710554	rs45619931	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr2	171715387	rs769402	G	A	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.861;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:242,99:0.29:341
chr2	171786169	rs2676158	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	171786239	rs3770442	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	171793357	rs35123411	C	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	171818289	rs2557804	G	A	11351.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr2	171822466	rs4668356	C	T	18646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=0.000;DB;DP=1526;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.174;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:630,885:0.58:1515
chr2	171851048	rs11397597	C	CA	661.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=1.754;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:6,42:0.88:48
chr2	171853359	rs2883940	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	171862578	.	T	TA	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.160;QD=5.59;ReadPosRankSum=1.818;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr2	171862954	rs148912074	TAAAA	T	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	171906469	rs3217296	GA	G	2449.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:63,72:0.53:135
chr2	171910256	rs73027271	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-2.670;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr2	171910313	rs11553951	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr2	171916664	rs2676130	A	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	171938279	rs11458941	G	GT	682.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,28:0.26:106
chr2	172016756	rs113416007	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	172180771	rs10205459	A	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	172187261	.	AT	A	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.340;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr2	172188368	rs13023973	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr2	172193808	.	T	C	43	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=55;MMLQ=27;MQ=60.0;NF=3;NR=2;PP=43;QD=15.5542425094;SC=AAAGTAGACATTGAGATTAAG;SbPval=0.64;Source=Platypus;TC=18;TCF=11;TCR=7;TR=5;WE=172193816;WS=172193798;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr2	172216969	rs3731986	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr2	172378818	rs868106	A	G	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:65,137:0.68:202
chr2	172378889	rs2356782	C	G	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=1.477;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	172378893	rs3731976	G	A	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.59;ReadPosRankSum=0.939;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr2	172379686	rs960750	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr2	172379781	rs960749	G	A	5314.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:135,252:0.65:387
chr2	172379936	rs960748	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:15,58:0.79:73
chr2	172398091	rs62181678	C	G	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:87,155:0.64:242
chr2	172398311	rs7586144	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr2	172563922	rs312925	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	172564021	rs312924	A	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	172569134	rs5836347	AT	A	519.92	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr2	172582281	rs139032813	A	ATTAC	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	172644229	rs2292813	T	C	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	172650382	rs6745143	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	172709215	rs3770444	G	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	172712480	rs2056202	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	172725301	rs1878583	A	G	10265.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr2	172750532	rs148103840	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr2	172931008	rs138869820	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.542;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	172944748	rs58045367	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=0.589;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	172966250	rs2228184	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:104,53:0.34:157
chr2	172967302	rs743605	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr2	173292709	rs6744873	A	G	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.953;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:142,72:0.34:214
chr2	173292713	rs6716540	C	T	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=1.615;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:136,65:0.32:201
chr2	173292728	rs6731763	T	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-1.810;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:98,57:0.37:155
chr2	173332115	rs2272499	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:56,91:0.62:147
chr2	173333720	rs17676773	G	A	708.41	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr2	173334161	rs147116420	T	TATGATTTAGTACC	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	173337669	.	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.072;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr2	173339808	rs11895564	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr2	173340179	rs147572355	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.751;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	173340200	rs11464370	C	CA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.891;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	173341249	rs16860507	A	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-1.101;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:71,53:0.43:124
chr2	173344261	rs7588603	G	A	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.966;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:69,31:0.31:100
chr2	173344474	rs1920979	A	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	173344877	rs16860527	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	173352103	rs2293649	C	T	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:169,250:0.60:419
chr2	173352259	rs13429563	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:228,133:0.37:361
chr2	173352507	rs2737085	G	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr2	173353000	rs138348628	A	AT	663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.327;QD=9.91;ReadPosRankSum=0.928;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr2	173353060	rs1319059	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	173368743	rs145916893	CTTAGACATTCCCATTTAGTGTATTTGCTTCTTTGTGAGA	C	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=9.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.464;SOR=1.728;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr2	173369000	rs61499296	A	AT	886.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr2	173429496	rs10531054	TTAGG	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	173435578	.	C	CT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.316;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:115,39:0.25:154
chr2	173435658	rs141130222	CAG	C	641.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	173600603	rs76443145	C	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr2	173600783	rs34574292	C	CG	7108.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	173609173	rs13005651	T	A	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:163,263:0.62:426
chr2	173659913	rs7585729	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	173662354	rs6433382	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr2	173686465	rs11446027	T	TAA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=0.709;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	173686663	rs2258180	G	T	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:132,77:0.37:209
chr2	173686798	rs2258175	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr2	173782917	rs62174627	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	173793096	rs3835838	GA	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	173831934	rs16861098	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr2	173848200	.	CT	C,CTT	1980.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=3.167;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.492;SOR=0.735;set=HC	GT:AD:AF:DP	1/2:41,123,66:0.53,0.29:230
chr2	173848287	rs17301507	C	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:75,103:0.58:178
chr2	173861456	rs5010643	G	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	173898719	rs2290376	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr2	174068513	rs11899707	G	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	174086285	rs74417392	C	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	174094574	rs1866636	G	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=-0.711;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	174125960	rs6761224	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr2	174131392	rs35608243	T	C	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr2	174227876	rs767074	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	174228418	rs4972555	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	174229731	rs13382180	A	G	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.256;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:82,36:0.31:118
chr2	174230153	rs2288993	C	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	174230983	rs35959156	G	GT	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.71;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	174232076	rs3816061	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	174828618	rs113303834	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	174940280	rs72920507	A	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-2.900;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr2	174943876	rs3754812	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr2	174987794	rs34684057	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.089;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr2	175087904	rs144616571	T	C	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr2	175199691	rs72915559	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr2	175199869	rs56000618	G	T	5531.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:158,261:0.62:419
chr2	175199895	rs3856434	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:231,138:0.37:369
chr2	175200014	rs34372833	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr2	175202223	.	C	T	2860.77	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:38,128:0.77:166
chr2	175213645	rs73975114	G	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr2	175244756	rs2358666	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.51;QD=24.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	175246386	.	GA	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.28;ReadPosRankSum=0.344;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	175289144	rs3739150	C	A	82.88	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	175289314	rs17255817	T	C	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-1.636;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,60:0.67:89
chr2	175292364	rs17256082	T	C	30.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	175292580	rs145699077	TTCAAATTTATCAG	T	905.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	175300997	rs6757461	G	A	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:135,223:0.62:358
chr2	175306645	rs34371550	AT	A	171.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.667;QD=11.45;ReadPosRankSum=0.652;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	175306691	rs35594437	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr2	175309624	rs12993286	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr2	175309792	rs34291465	T	C	5670.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:159,273:0.63:432
chr2	175311520	rs6719782	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,42:0.37:114
chr2	175318396	rs12614979	G	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=6.239;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.041;QD=4.16;ReadPosRankSum=-1.859;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr2	175326258	rs72910819	G	T	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	175335076	rs2358637	G	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	175426750	rs6732100	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr2	175431990	rs143689509	AAGAG	A	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr2	175432635	rs76731102	T	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.637;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:117,49:0.30:166
chr2	175436234	rs1044335	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr2	175436940	rs4972450	G	A	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:56,103:0.65:159
chr2	175439512	rs1367218	T	C	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	175439536	rs12624277	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:223,87:0.28:310
chr2	175439681	rs3049897	T	TA	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=3.071;QD=4.25;ReadPosRankSum=0.371;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr2	175613059	rs3816448	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	175614908	rs60033877	CA	C	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.239;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.161;QD=3.09;ReadPosRankSum=1.246;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr2	175622788	rs2646164	G	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	175677022	rs12613075	C	T	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr2	175689342	.	C	CTA	80	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=27;MQ=60.0;NF=0;NR=7;PP=80;QD=12.7142857143;SC=GCCACATATTCTATATATATA;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=7;WE=175689351;WS=175689332;set=Platypus	GT:AD:AF:DP	1/0:17,7:0.29:24
chr2	176032315	.	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.895;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr2	176867131	rs747051	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	176957822	rs2518053	G	A	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	176958011	rs847195	C	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:227,116:0.34:343
chr2	176964904	rs847151	G	A	9227.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	176972912	rs113128957	AG	A	210.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=30.12;ReadPosRankSum=-0.792;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr2	176972916	.	G	C	219.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.41;ReadPosRankSum=-1.068;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr2	176983598	rs143151088	CAAAACCAAAACA	C	1105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.16;MQRankSum=1.329;QD=20.10;ReadPosRankSum=2.238;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr2	176988015	rs711821	C	A	4108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.118;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:450,241:0.35:691
chr2	176988412	rs698258	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.074;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	176989023	rs711822	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	176995262	rs7580746	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.466;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-2.387;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:238,78:0.25:316
chr2	177036211	rs2857535	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,71:0.51:139
chr2	177036754	rs1051929	T	C	4702.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:485,264:0.35:749
chr2	178098679	rs78088214	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr2	178129390	rs143406266	TGGC	T	1065.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr2	178257839	rs114901772	A	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:86,53:0.38:139
chr2	178326838	rs1979059	C	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	178346654	rs140823121	GCCATTATTCC	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.431;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	178346854	rs115580413	C	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-2.178;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:48,34:0.41:82
chr2	178362572	rs12468046	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.240;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	178370380	rs16865316	T	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	178417142	rs11694988	C	T	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:307,159:0.34:466
chr2	178417225	rs11695035	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr2	178481818	rs10497497	G	T	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:257,98:0.28:355
chr2	178494173	rs3830637	G	GGGA	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.479;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr2	178528703	rs13025391	C	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:169,66:0.28:235
chr2	178528789	rs13025904	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-1.280;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr2	178534324	rs6433687	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:117,51:0.30:168
chr2	178540293	rs3770016	A	G	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,86:0.58:148
chr2	178545713	rs4538242	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	178561947	rs2886424	G	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	178565815	rs10201180	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr2	178576681	rs13428806	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	178681447	rs6433697	C	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	178681534	rs6433698	C	T	9184.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:4,363:0.99:367
chr2	178682558	rs3841879	A	ATATAAAC	2780.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.56;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	178682603	rs6720891	T	C	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	178682655	rs3821010	A	G	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	178684878	rs144786387	A	AAG	595.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	178684879	rs58796031	T	G	604.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.32;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	178684921	rs13386827	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	178685129	rs13386870	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	178764364	.	A	AATATAT	300.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;QD=33.41;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr2	178769992	rs2695096	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	178936373	rs1435573	T	G	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	178936614	rs6433711	C	T	10899.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:1,410:1.00:411
chr2	178990941	rs56809827	CAT	C	2254.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr2	179203797	rs1434087	G	A	9113.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	179226290	rs1560871	T	C	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	179236831	rs6433724	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	179238507	rs7595571	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	179238841	rs10190530	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	179248986	rs74705211	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-1.385;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr2	179250163	rs34784245	T	TC	1208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-1.090;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:103,44:0.30:147
chr2	179260382	rs2304340	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	179306441	rs199996045	GA	G	751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.01;ReadPosRankSum=1.304;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:81,44:0.35:125
chr2	179312440	rs150523431	G	GTAC	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	179324025	rs7600176	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr2	179334277	rs7565338	G	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	179341953	rs6704545	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:143,86:0.38:229
chr2	179360264	rs61729159	C	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr2	179363807	rs3214536	A	AT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.56;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	179363909	rs371719002	AT	A	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.262;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr2	179366093	rs2303537	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=2.271;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	179367086	rs967507	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.171;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	179395958	rs3813250	T	C	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.608;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:100,157:0.61:257
chr2	179396738	.	G	A	1879.77	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:51,89:0.64:140
chr2	179396750	rs144094650	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,92:0.60:154
chr2	179400585	.	GA	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.302;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:60,24:0.29:84
chr2	179403750	rs4894028	C	T	4674.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:178,223:0.56:401
chr2	179406003	rs3731750	C	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:47,76:0.62:123
chr2	179407763	rs58609542	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.782;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:69,22:0.24:91
chr2	179408713	rs62621236	A	G	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:81,146:0.64:227
chr2	179414318	rs747122	C	T	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:128,241:0.65:369
chr2	179416556	rs11897366	A	C	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr2	179421609	rs9808036	C	T	6953.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:187,334:0.64:521
chr2	179421694	rs9808377	A	G	5007.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:125,232:0.65:357
chr2	179427186	rs2366751	A	G	6964.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:237,338:0.59:575
chr2	179427536	rs3829746	T	C	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:71,177:0.71:248
chr2	179435337	rs6732060	T	G	7862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.138;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:238,379:0.61:617
chr2	179438866	rs10164753	C	T	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:113,177:0.61:290
chr2	179443217	rs3769864	T	G	261.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	179443540	rs10497517	A	G	8561.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:254,410:0.62:664
chr2	179444768	rs4145333	C	G	9118.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,353:0.99:355
chr2	179447848	rs4894029	T	C	4609.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:149,226:0.60:375
chr2	179448967	rs72646862	A	AAAC	1430.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr2	179451420	rs2042996	G	A	3647.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:61,168:0.73:229
chr2	179454394	rs1560221	A	G	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:146,211:0.59:357
chr2	179455207	rs2163009	T	C	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:107,215:0.67:322
chr2	179464527	rs1001238	T	C	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:68,136:0.67:204
chr2	179477332	rs34928195	AT	A	60.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	179479741	rs16866416	G	A	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr2	179486166	.	TTAGAAATAAA	T	2036.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=14.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.22;ReadPosRankSum=1.248;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:45,51:0.53:96
chr2	179486178	.	G	GT	2043.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=16.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=0.689;SOR=2.111;set=HC	GT:AD:AF:DP	0/1:46,53:0.54:99
chr2	179486179	.	A	T	2052.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=19.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=1.100;SOR=2.243;set=HC	GT:AD:AF:DP	0/1:46,52:0.53:98
chr2	179498303	rs16866425	T	C	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:135,248:0.65:383
chr2	179499038	rs7590037	A	G	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:72,117:0.62:189
chr2	179511767	rs10580462	GTA	G	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;ReadPosRankSum=1.501;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	179513923	rs7606485	A	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=2.577;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	179528335	rs10204913	T	C	1739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.010;QD=14.14;ReadPosRankSum=1.077;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:42,81:0.66:123
chr2	179528378	rs2163008	C	T	1828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.010;QD=13.85;ReadPosRankSum=-1.092;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:45,87:0.66:132
chr2	179531856	rs10221760	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.35;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	179539903	rs2472751	C	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.013;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr2	179539963	rs13398590	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	179547293	rs4894034	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	179548695	rs372078760	AT	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.675;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.179;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr2	179553917	rs2627038	G	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr2	179554305	rs2244492	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr2	179558366	rs2042995	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.398;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,40:0.53:76
chr2	179566146	rs2251987	T	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	179566802	rs143023206	T	TA	828.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,53:0.59:90
chr2	179571448	rs4893852	A	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,115:0.56:205
chr2	179571697	rs10203085	C	T	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr2	179576596	rs2742331	A	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	179578108	rs71393436	T	TACAAA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.39;ReadPosRankSum=1.465;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr2	179578478	rs10176708	C	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	179578704	rs13398235	G	A	6119.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:190,292:0.61:482
chr2	179578730	rs2562839	G	A	5212.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:170,249:0.59:419
chr2	179579212	rs2562838	T	C	5421.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:156,257:0.62:413
chr2	179579822	rs2562836	T	A	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:104,204:0.66:308
chr2	179580210	rs10183237	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr2	179580525	rs10183361	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr2	179582537	rs2627043	G	T	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:124,180:0.59:304
chr2	179585266	rs2562831	C	T	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	179585393	rs2562830	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr2	179587546	rs16866473	A	G	3259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.054;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:97,154:0.61:251
chr2	179587687	rs2742327	T	C	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:154,217:0.58:371
chr2	179593010	.	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.273;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:290,84:0.22:374
chr2	179593352	rs11888217	C	T	4671.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:152,222:0.59:374
chr2	179595577	.	G	GT	744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=2.656;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	179597160	rs10200398	T	A	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:106,154:0.59:260
chr2	179600563	rs2742348	G	A	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	179606538	rs2627037	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:49,102:0.68:151
chr2	179614952	rs10803917	A	G	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	179615887	rs922984	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr2	179615931	rs922985	C	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	179615994	rs922986	T	C	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	179616121	rs72647896	T	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr2	179618019	rs3754953	T	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.46;ReadPosRankSum=-0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	179620951	rs7585334	C	T	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:262,121:0.32:383
chr2	179621477	rs6433728	C	T	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	179623758	rs2291310	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:247,114:0.32:361
chr2	179623939	rs6705594	T	C	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	179629363	rs4894043	T	C	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	179629461	rs2291311	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr2	179631214	rs2291312	T	C	3124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=0.551;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:57,143:0.71:200
chr2	179631364	rs140501763	AC	A	1623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=-0.381;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:33,67:0.67:100
chr2	179632496	rs4893853	T	C	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:137,231:0.63:368
chr2	179632710	rs2291313	T	C	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:268,140:0.34:408
chr2	179633298	rs4471922	G	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	179633644	rs4894045	G	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr2	179634376	rs72125115	GTA	G	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr2	179635882	rs4894047	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	179638721	rs4894048	C	T	5253.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:143,247:0.63:390
chr2	179639297	rs3816781	C	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	179642162	rs72647877	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:100,48:0.32:148
chr2	179642425	rs719201	G	A	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr2	179643886	rs2291302	A	G	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	179643934	rs2291301	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	179644035	rs1552280	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	179644855	rs10497520	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:86,26:0.23:112
chr2	179654313	rs13421990	A	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:56,122:0.69:178
chr2	179667090	rs3816849	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr2	179682445	rs67494185	CAT	C	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	179682468	rs112010453	T	TTTTC	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	179698945	rs16866554	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,34:0.34:101
chr2	179702268	rs1032283	A	G	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	179702437	rs13419085	T	C	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:88,174:0.66:262
chr2	179702577	rs3045731	A	AGG	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	179718133	rs13033688	T	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr2	179719966	rs1872203	A	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	179732845	rs12988301	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr2	179732979	rs200275373	A	AG	284.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.475;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr2	179732980	rs10165177	A	G	91.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.786;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	179732981	.	A	T	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.591;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	179732997	rs10165253	A	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr2	179737144	rs12693170	C	A	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	179749501	rs1016800	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	179753245	rs7573293	C	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr2	179753549	rs1873164	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	179770175	rs34883828	C	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:153,93:0.38:246
chr2	179809500	rs9677932	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	179839962	rs75704987	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.60;ReadPosRankSum=1.882;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	179979930	rs2289993	T	C	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	179980070	rs2044479	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	179982125	rs3217565	AAGAT	A	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	179988395	rs5836671	T	TA,TAA	682.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.965;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;MQRankSum=0.649;QD=14.84;ReadPosRankSum=1.897;SOR=1.426;set=HC	GT:AD:AF:DP	1/2:7,23,16:0.50,0.35:46
chr2	179989039	rs2289992	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	179997177	rs3214766	AT	A	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	180039068	rs13013868	C	T	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	180047746	rs1446673	G	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	180047908	rs6757681	T	C	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	180308335	.	C	G	23	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=1;HapScore=2;MGOF=15;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=23;QD=28.8856062736;SC=GTCAAGAAATCATTATTTTCA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=180308343;WS=180308325;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	180383498	rs4567894	C	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	180409496	rs80000888	C	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.406;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	180725481	rs259816	T	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	180810180	rs6433817	C	T	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	180810264	rs6433818	A	T	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	180815528	rs2304858	A	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	180819592	rs13406101	A	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.968;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	180835589	rs4894140	A	G	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	180835792	rs3768837	T	A	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	180837722	rs6433820	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	180837806	rs6433821	T	A	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr2	180843126	rs2367990	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	180846743	rs3738943	G	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	181851996	rs79974548	TT	GA	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.745;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:82,29:0.26:111
chr2	181854692	rs61080739	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	182345003	rs147352104	A	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=-0.697;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	182359613	rs165419	G	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	182374534	rs1143674	A	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr2	182376546	rs1466109	T	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	182387133	rs7602504	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	182395345	rs1143676	G	A	10258.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr2	182399097	rs7562325	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	182399497	rs11418738	A	ATT	1332.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=0.103;SOR=0.400;set=HC	GT:AD:AF:DP	1/1:3,51:0.94:54
chr2	182399638	rs2124443	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	182402790	rs6747500	G	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	182403792	rs57234957	A	AT	7789.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	182403851	rs10180793	G	A	10574.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	182412633	rs139036113	G	GACACACACACAC,GACACACACACACAC	7899.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=4.005;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=0.000;QD=42.02;ReadPosRankSum=1.713;SOR=0.951;set=HC	GT:AD:AF:DP	1/2:1,33,154:0.18,0.82:188
chr2	182412723	rs34890422	C	CGT	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	182413259	rs12997453	A	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	182413602	rs13003064	A	T	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	182468818	rs6433923	A	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	182468855	rs6433924	A	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	182521535	rs61733527	C	T	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:321,197:0.38:518
chr2	182543455	rs1801262	T	C	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:294,162:0.36:456
chr2	182780912	rs76339980	A	C	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.555;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:207,127:0.38:334
chr2	182926150	rs10497591	C	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	182928555	rs1196161	G	C	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:185,130:0.41:315
chr2	182981846	rs1882211	G	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.688;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	183032778	rs78879279	T	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	183053644	rs10497595	T	A	6423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=13.47;ReadPosRankSum=1.619;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:170,307:0.64:477
chr2	183066377	rs111979949	C	CA,CAA	1077.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.658;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=1.963;SOR=1.513;set=HC	GT:AD:AF:DP	1/2:13,43,21:0.56,0.27:77
chr2	183066422	.	G	A	2791.77	.	AC=1;AF=0.500;AN=2;DP=213;set=Intersection	GT:AD:AF:DP	0/1:80,132:0.62:212
chr2	183070580	rs74397875	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=-0.241;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	183088584	rs3754929	G	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	183106758	rs2568667	T	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	183593697	rs288280	C	T	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	183597062	rs34818934	T	TG	819.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.29;MQRankSum=0.516;QD=35.64;ReadPosRankSum=-0.879;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	183597063	rs34295287	T	TG	819.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.29;MQRankSum=0.516;QD=35.64;ReadPosRankSum=0.000;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	183597318	rs825660	A	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	183616592	rs3098359	C	T	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr2	183616748	rs3115425	G	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr2	183622547	rs288334	T	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	183622641	rs288333	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	183627504	rs192618	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	183627619	rs190830	C	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	183793383	rs9333279	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	183793398	rs9333280	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	183794728	rs13009031	C	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr2	183799558	rs9288088	G	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr2	183817780	rs56344408	T	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	183827018	rs2271671	G	A	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-2.613;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr2	183843744	rs55739115	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	183846161	rs73046232	T	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr2	183848114	rs1400130	T	C	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:71,122:0.63:193
chr2	183851058	rs10185562	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	183859690	rs142936807	C	CT	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	183860298	rs10497617	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.28;ReadPosRankSum=-0.687;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	183960143	rs57818913	G	GT	888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.863;QD=8.89;ReadPosRankSum=0.675;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr2	183960477	rs35941903	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr2	183988984	rs2705719	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	183989305	rs13035624	C	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	183995742	rs925803	A	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	183998237	rs1980160	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr2	184016145	rs2368374	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr2	184024190	rs3748884	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	184024511	rs34967913	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	185801755	rs4667002	A	G	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	185802398	rs116133259	A	G	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,89:0.58:154
chr2	185803876	rs145975390	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	186603605	rs35617283	A	AG	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr2	186610344	rs11884004	T	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	186610388	rs17813736	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	186611566	rs6758484	C	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	186611938	rs12618129	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	186621067	rs116667549	T	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.040;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	186625670	rs10547921	TA	T	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.78;ReadPosRankSum=2.676;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	186625767	rs183605884	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=2.546;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	186625770	rs7562137	A	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	186627943	rs17228441	T	C	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	186629349	rs1986166	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	186654592	rs992822	A	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	186655726	rs10931199	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	186655900	rs114059375	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=2.402;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr2	186656657	rs10173807	C	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	186656889	rs80073781	A	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:51,80:0.61:131
chr2	186656956	rs17229201	T	C	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	186657089	rs17229222	C	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	186658056	rs60029104	G	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	186658438	rs10490391	C	T	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	186658565	rs10490392	G	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	186658786	rs76311269	A	T	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:45,93:0.67:138
chr2	186659359	rs2161036	G	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	186660741	rs80269489	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr2	186661176	rs73045076	G	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:108,53:0.33:161
chr2	186661673	rs55938253	A	G	7170.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	186664473	rs11686997	T	C	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	186664963	rs10931200	C	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	186665191	rs11892184	G	C	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr2	186665432	rs36004074	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	186665824	rs11695215	A	G	6724.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	186667121	rs7605884	T	C	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	186668221	rs11885851	A	C	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr2	186670104	rs7576532	A	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	186670979	rs4666689	T	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	186671114	rs76069343	C	T	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,90:0.66:137
chr2	186671357	rs17826534	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	186671912	rs1862066	G	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	186678241	rs34138386	A	AT	208.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	186678887	rs2161035	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	186680041	rs2287606	G	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	186696759	rs2302913	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	186697710	rs7594991	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr2	186697876	rs1468999	A	G	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	187364811	rs4144786	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	187365232	rs11888324	A	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	187370673	rs11690758	G	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	187455278	rs9333287	C	T	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	187487160	rs9333288	G	A	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	187490371	rs2197787	T	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	187490389	rs28633327	G	T	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	187497988	rs56088351	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	187501648	rs13430921	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	187502846	rs13422838	T	C	44.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	187529823	rs201401004	ATT	A,AT	1792.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.773;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=1.232;QD=10.02;ReadPosRankSum=-1.257;SOR=0.605;set=HC	GT:AD:AF:DP	1/2:36,56,87:0.31,0.49:179
chr2	187532417	rs2230616	G	A	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	187559047	rs144403657	G	GCAA	22237.73	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:45,595:0.93:640
chr2	187611748	rs2247924	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	187698037	rs7609183	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	187698787	rs139317820	GA	G	1102.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	187702339	.	GTATA	G	88.25	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	188216807	rs858745	T	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	188243633	rs3771084	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=-0.029;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	188245640	rs1511877	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	188250301	rs698577	T	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	188293545	rs113375998	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=0.076;QD=11.81;ReadPosRankSum=1.154;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	189342394	rs13414327	T	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,86:0.65:132
chr2	189342602	rs13403508	C	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr2	189433917	rs61045757	C	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	189447078	rs12328188	A	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,61:0.74:82
chr2	189448896	rs2048138	A	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	189849773	rs3106796	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	189853308	rs10166835	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	189856471	rs13395712	C	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr2	189857993	rs12693525	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	189858213	rs13402856	G	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	189859073	rs2271679	T	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr2	189859434	rs72425404	C	CT	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=1.371;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	189860630	rs13306267	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	189860792	rs13306269	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr2	189860975	.	AGTGT	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.22;ReadPosRankSum=0.732;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	189861006	.	ATATG	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.96;ReadPosRankSum=-0.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	189862203	rs3134654	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	189862352	rs2271680	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.380;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr2	189862890	rs28736387	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=0.215;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	189863276	rs41263763	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	189866199	rs2271682	T	A	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	189866342	rs3215251	AC	A	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	189867144	rs13306257	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr2	189867239	rs13306260	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	189868381	rs3765160	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr2	189868410	rs3765161	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr2	189871573	rs10168216	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	189871623	rs10194475	G	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=1.574;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	189871627	rs10194304	C	T	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=1.169;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr2	189875421	rs1516446	T	G	9268.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr2	189875695	rs3768660	T	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	189899541	rs4666770	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	189899572	rs7420715	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	189904203	rs10208525	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.523;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:34,59:0.63:93
chr2	189904233	rs10197596	T	G	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.232;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:26,49:0.65:75
chr2	189906516	rs115638230	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.000;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr2	189907937	rs6434312	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	189914027	rs13383588	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	189914220	rs114502556	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-2.305;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:87,56:0.39:143
chr2	189916879	rs111609220	T	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr2	189916955	rs111644889	G	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.491;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:59,53:0.47:112
chr2	189917617	rs79623676	C	T	1389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.098;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:142,78:0.35:220
chr2	189918337	rs6750027	T	C	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	189918584	rs13413060	A	G	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:39,96:0.71:135
chr2	189918843	rs13413296	A	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr2	189923104	rs7556733	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	189923630	rs5837121	AT	A	3904.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.541;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.772;QD=14.25;ReadPosRankSum=0.827;SOR=0.549;set=HC	GT:AD:AF:DP	1/1:31,243:0.89:274
chr2	189925548	rs6414122	T	A	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	189925566	rs13416565	A	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr2	189927506	rs7424947	C	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	189927530	rs79568088	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	189932831	rs2229495	T	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	189943121	rs5837122	GA	G	150.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.781;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	189945626	rs10182959	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr2	189945858	rs114280344	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	189951424	rs371071806	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,17:0.25:69
chr2	189962360	rs13396958	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr2	189974958	rs4128539	G	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	190313268	rs77312241	C	T	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:147,85:0.37:232
chr2	190313570	rs28760459	T	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.285;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr2	190313613	rs28509172	G	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=3.181;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr2	190314052	rs10196323	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.400;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr2	190314085	rs28627748	T	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.173;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr2	190314086	rs148868206	C	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr2	190314186	rs10196675	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.227;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	190315720	rs10202780	G	C	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-1.364;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr2	190315723	rs10178969	A	C	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-1.843;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr2	190316625	rs13389403	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr2	190319954	rs112007236	A	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.712;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	190319963	rs377155083	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.258;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	190319966	.	C	CAAAAAAAA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.133;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	190319990	rs1224958	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	190320083	rs6737615	C	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.112;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:210,83:0.28:293
chr2	190321930	rs112846132	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	190321978	rs138257723	G	GA	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-1.354;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	190324047	rs111249433	A	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	190324195	rs74699810	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr2	190324215	rs75875035	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr2	190327126	rs2304702	C	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	190327179	rs77698215	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,56:0.39:142
chr2	190327389	rs112863490	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	190328382	rs113875420	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.646;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	190328561	rs77997560	C	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:130,62:0.32:192
chr2	190328699	rs142586889	A	AT	666.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr2	190329873	rs13429203	A	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:249,149:0.37:398
chr2	190331081	rs76407376	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	190443311	rs67682938	CAT	C	2611.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	190448047	rs987028	T	C	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	190448542	.	CACACACATAT	C	286.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=-0.963;QD=10.62;ReadPosRankSum=1.136;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	190448548	rs368151678	CATAT	C	96.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.031;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	190531426	rs1437880	G	A	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	190531615	rs3828267	T	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:268,119:0.31:387
chr2	190541497	rs140832996	T	G	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:63,137:0.69:200
chr2	190541854	rs200482178	TTTTTTTG	T	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr2	190561060	rs113995284	A	G	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:125,200:0.62:325
chr2	190570001	rs11319823	TA	T	247.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	190575668	rs115359564	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	190584273	rs147659765	A	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	190593168	rs3067424	ATTTTT	A	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	190593311	rs1225087	C	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	190595258	rs1225090	G	T	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	190602513	rs1225099	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	190609408	rs113178256	A	AT	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	190611414	rs2254166	T	C	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	190611459	rs2254167	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	190617643	rs2243876	A	G	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	190617700	rs16831960	T	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:67,114:0.63:181
chr2	190619144	rs114388332	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	190647108	rs10168387	T	C	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	190670539	rs3214425	T	TA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-2.053;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr2	190682632	rs3791773	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.123;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	190682952	rs113116659	T	TAAAC	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	190722170	rs735558	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr2	190722343	rs735559	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	190742172	rs5743199	T	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.472;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr2	190788123	rs77427005	G	T	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:206,109:0.35:315
chr2	190925077	rs1805086	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	190925149	rs142195885	A	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	190925245	rs2293284	T	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	190926859	rs11333758	GT	G	1356.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	190927017	rs34191156	G	A	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr2	191064951	rs138209976	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	191159232	rs188339	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	191161622	rs1058180	T	C	10139.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr2	191175639	rs36074132	GT	G	2126.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	191184475	rs291466	A	G	14130.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:6,564:0.99:570
chr2	191184524	rs3749022	C	T	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	191301368	rs9646748	A	G	15695.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr2	191334424	rs10193212	G	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	191334459	rs145257711	A	ATTTTTAT	350.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.574;QD=15.26;ReadPosRankSum=-1.259;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	191354658	rs59123011	C	CCT	4698.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	191373775	rs6707244	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	191374043	rs13429315	C	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	191375375	rs6712426	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	191383924	rs13395233	C	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	191389853	rs74975456	T	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	191390126	rs10931458	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	191399378	rs13412879	C	G	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	191399433	rs12693579	T	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	191523862	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.607;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	191535311	rs2109957	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	191537793	rs5837195	GT	G	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.109;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	191545821	rs12618075	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr2	191545925	rs138083750	T	TA	61	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	191552121	.	CAAA	C	1147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=6.057;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.447;QD=16.63;ReadPosRankSum=0.852;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,53:0.77:69
chr2	191745794	rs201630298	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr2	191760004	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-0.486;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	191765206	rs3771313	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	191792229	rs112035720	A	ATT	1143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=3.205;QD=13.78;ReadPosRankSum=0.370;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr2	191839464	rs2066793	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	191839976	rs1914408	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr2	191841606	rs35098579	T	C	4007.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:123,190:0.61:313
chr2	191841759	rs2066804	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.000;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:65,40:0.38:105
chr2	191843830	rs2280235	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr2	191848312	rs12477076	T	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	191854423	rs2066797	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	191865745	rs45579036	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr2	191872176	rs16833164	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.54;ReadPosRankSum=-0.842;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	191872782	rs45450793	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr2	191874667	rs2066802	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:184,84:0.31:268
chr2	191894442	rs3024907	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	191922136	rs115203597	T	C	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-0.816;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr2	191922307	rs56816363	CT	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.064;QD=10.55;ReadPosRankSum=0.098;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr2	191941007	rs3024838	T	C	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=2.263;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:197,142:0.42:339
chr2	191996518	rs1551443	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:106,50:0.32:156
chr2	191996589	rs6717352	C	A	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:74,132:0.64:206
chr2	192160839	rs4853574	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.432;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr2	192160875	rs4853575	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:63,18:0.22:81
chr2	192161058	rs11397643	G	GT	872.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	192161103	rs10622945	A	ATTCT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.081;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr2	192225476	.	G	GTT	1263.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=7.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=4.121;SOR=1.484;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr2	192225477	.	G	GTTGT	2439.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=1.449;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:56,92:0.62:148
chr2	192247808	rs34460997	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	192247836	rs4641883	C	T	240.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	192250543	rs13000398	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr2	192250568	rs13026888	T	C	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.009;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:42,57:0.58:99
chr2	192250726	rs13018796	G	A	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:165,174:0.51:339
chr2	192252078	rs10183463	G	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:241,118:0.33:359
chr2	192255226	rs112007176	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr2	192272933	rs2271768	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-0.029;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr2	192273984	rs6738897	T	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	192279327	rs2271767	T	C	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:140,230:0.62:370
chr2	192711162	rs4471838	A	C	3615.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:56,163:0.74:219
chr2	192711262	rs35012125	C	G	3762.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:77,174:0.69:251
chr2	192820856	rs75272162	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	192820898	rs7606017	T	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	193056737	rs3768702	C	A	1503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-2.073;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:54,74:0.58:128
chr2	196545817	rs16838394	C	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=0.536;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:14,39:0.74:53
chr2	196582816	rs842736	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	196602582	rs75708451	A	AAAT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=1.121;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr2	196605447	rs147122074	TATAAA	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.122;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	196636662	rs1145939	C	G	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	196663997	rs7567285	T	C	1623.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=0.423;SOR=0.233;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr2	196673533	rs13411834	A	G	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr2	196681284	rs2280452	A	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=-2.074;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	196682630	rs975417	C	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	196709683	rs16840768	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr2	196720705	rs16841018	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr2	196723037	rs16841098	T	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	196749504	rs60214909	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr2	196749512	rs62623593	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	196749544	rs341947	C	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	196756535	rs79407338	GAA	G	1357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.134;QD=16.97;ReadPosRankSum=-1.604;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:28,52:0.65:80
chr2	196762491	rs5837482	TA	T	706.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.446;QD=9.55;ReadPosRankSum=1.559;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:14,60:0.81:74
chr2	196771780	rs6710775	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	196824915	rs13432564	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.47;ReadPosRankSum=-1.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	196825402	rs6719500	T	C	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:103,181:0.64:284
chr2	196836945	.	T	C	28	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=28;QD=15.6928031368;SC=AAAATGAAAATAAAATATCTA;SbPval=1.0;Source=Platypus;TC=17;TCF=15;TCR=2;TR=4;WE=196836953;WS=196836935;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr2	196851911	rs10931715	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr2	196865468	rs16843720	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.000;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:103,39:0.27:142
chr2	196866627	rs115909726	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	196877557	rs17838596	T	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.590;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr2	196912067	rs4850381	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr2	196913080	rs114788238	T	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:58,105:0.64:163
chr2	196915991	rs10174065	A	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-2.029;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	196935811	rs12693777	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-1.307;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr2	197004439	rs1054537	A	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	197008449	rs3736516	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	197008529	rs1568368	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	197021372	rs12478353	T	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr2	197065889	rs3795921	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	197065964	rs3820908	C	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	197066175	rs4566380	T	G	1000.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.75;ReadPosRankSum=0.986;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:4,40:0.91:44
chr2	197080554	rs9288259	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr2	197084982	rs2305568	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr2	197085695	rs78356679	C	T	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr2	197086778	rs16847477	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	197086912	rs16847479	G	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:79,175:0.69:254
chr2	197092786	rs10497781	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr2	197106759	rs2045277	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	197118729	rs4850690	C	T	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	197184321	rs1531111	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,101:0.62:162
chr2	197187391	rs10191211	A	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.799;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	197208366	rs6757981	C	T	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.324;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:51,78:0.60:129
chr2	197208531	rs6716054	T	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	197208579	rs13430780	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr2	197504545	rs1879128	C	G	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:79,141:0.64:220
chr2	197504671	rs116247076	C	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.827;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:101,44:0.30:145
chr2	197510934	rs142273672	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	197534692	rs7590083	C	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	197539008	rs28723611	G	A	2384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.518;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:76,117:0.61:193
chr2	197584504	rs2680970	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	197590571	rs80175114	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	197590624	rs76967664	C	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	197593787	rs2460436	C	T	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	197594203	rs2577580	G	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr2	197594972	rs75210784	C	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	197636379	rs62185599	A	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.799;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:67,33:0.33:100
chr2	197654578	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.000;QD=0.39;ReadPosRankSum=-0.205;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:71,17:0.19:88
chr2	197654593	.	T	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=5.602;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.466;QD=7.29;ReadPosRankSum=1.096;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:49,47:0.49:96
chr2	197758148	rs332299	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	197777589	rs12693800	C	T	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr2	197777721	rs35444896	A	C	5714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=0.910;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:127,270:0.68:397
chr2	197854233	rs144034091	T	TAC	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.511;QD=3.89;ReadPosRankSum=-0.335;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr2	197863851	rs4850742	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	197864996	rs6434897	A	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	197866470	rs12478175	T	A	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-1.243;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:56,81:0.59:137
chr2	197872727	rs57048274	T	TTCTC	1851.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	197943382	rs139294990	ATG	A	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.400;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:226,32:0.12:258
chr2	197953372	rs146161383	TAAGTC	T	2231.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr2	197954780	rs4300850	A	G	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	197964783	rs6743524	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	197986048	rs2697270	T	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	197989945	rs2579395	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	197990527	rs6434907	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	197990909	rs2918628	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	198001319	rs3731569	A	G	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	198011904	rs2249470	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:173,105:0.38:278
chr2	198012846	rs1528406	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	198175297	rs10931780	G	C	7885.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	198257652	rs11380582	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.682;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	198257795	rs4685	T	C	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:170,97:0.36:267
chr2	198265173	rs788017	T	A	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.178;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	198265526	rs788018	A	G	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:172,87:0.34:259
chr2	198266943	rs788019	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	198267770	rs3217350	G	GAA	663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.996;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr2	198281743	rs699318	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	198283305	rs788023	T	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.382;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:86,51:0.37:137
chr2	198285920	rs75850661	T	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:100,61:0.38:161
chr2	198355135	rs148517124	T	TTG	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.989;QD=9.87;ReadPosRankSum=-0.108;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	198362018	rs8539	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr2	198365043	rs1116734	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.695;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	198508951	rs10497806	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:157,72:0.31:229
chr2	198511086	rs16866970	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr2	198563642	rs6743671	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	198570600	rs35544931	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:189,141:0.43:330
chr2	198643529	.	TAC	T	35.73	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:61,11:0.15:72
chr2	198643631	rs700655	G	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:145,93:0.39:238
chr2	198669754	rs770659	G	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.682;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr2	198669871	rs770658	G	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.125;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	198950029	rs2228135	A	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chr2	198950968	rs75433604	A	AT	1042.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr2	200173684	rs10153730	T	G	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	200246318	rs2305262	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	200298313	rs7596597	A	G	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr2	200677625	rs2030653	C	T	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	200684249	.	T	TA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=2.239;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr2	200710706	rs769960	T	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	200800493	rs6435039	A	G	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	200820505	rs281766	T	G	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	200873144	rs113489455	AATACAAAAAAAACTTG	A	7962.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr2	201277011	rs11382442	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.329;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr2	201277181	rs6706953	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:82,44:0.35:126
chr2	201354935	rs3795969	C	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:146,108:0.43:254
chr2	201371768	rs3739116	G	T	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	201371841	.	G	A	514.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	201437328	rs35987478	C	A	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-1.120;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:114,72:0.39:186
chr2	201437334	rs12052989	T	C	5302.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.48;ReadPosRankSum=-0.592;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:2,191:0.99:193
chr2	201440939	rs66861543	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.34;ReadPosRankSum=0.063;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	201445152	rs4674194	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	201451006	rs4470327	C	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	201460104	rs7597590	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:46,92:0.67:138
chr2	201464295	rs10179964	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	201466954	rs2248130	C	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr2	201467231	rs2293524	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	201468732	rs2293525	C	G	3486.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:63,164:0.72:227
chr2	201470233	rs35086177	ATTTT	A,AT	1251.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.82;SOR=1.418;set=HC	GT:AD:AF:DP	1/2:0,22,12:0.65,0.35:34
chr2	201473674	rs2470902	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	201474179	rs17593811	C	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr2	201474237	rs4672858	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr2	201478527	rs141842645	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr2	201485572	rs4672865	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr2	201485649	rs4672866	T	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	201488758	rs2348021	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:96,43:0.31:139
chr2	201515939	rs868810	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	201515992	rs80217116	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	201523736	rs10931910	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	201526330	rs55754655	A	G	5438.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:146,258:0.64:404
chr2	201526368	rs41270243	C	G	4636.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:137,226:0.62:363
chr2	201541621	rs11678615	C	T	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:54,116:0.68:170
chr2	201541827	rs16834027	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.945;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	201677454	rs2270281	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr2	201677791	rs2270280	T	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	201683695	rs2881880	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	201686122	rs3815501	T	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	201686666	rs6705053	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	201719258	rs5837758	CA	C	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr2	201724360	rs12465952	A	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.847;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr2	201736112	rs11892119	T	C	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:147,217:0.60:364
chr2	201736166	rs7562391	A	C	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:145,166:0.53:311
chr2	201768238	rs7917	C	T	3894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-2.598;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:155,193:0.55:348
chr2	201778717	rs201460825	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.85;ReadPosRankSum=-0.791;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	201785657	rs2307358	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	201785837	rs2307362	G	A	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,117:0.67:175
chr2	201886947	.	GATA	G	841.73	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	202025131	rs2518142	G	A	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	202131587	rs2293554	T	G	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	202134144	rs13401994	G	T	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	202139739	.	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.546;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	202151163	rs3769818	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	202153225	rs700635	C	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	202154397	rs6715284	C	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	202213061	rs3731711	C	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr2	202215492	rs13014235	C	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	202284096	rs7564821	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	202284236	rs113582398	C	CTTAAT	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	202402250	rs3083390	AAC	A	42.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	202410147	rs10931955	C	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	202410300	rs10804117	A	T	145.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	202468136	rs10205247	T	A	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	202469361	rs12474206	C	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	202469472	rs7572583	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	202491995	rs2540450	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	202546113	rs1208073	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	202549626	rs1812933	A	G	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	202549684	rs141808717	G	A	397.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.14;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	202549685	rs201871946	A	G	63.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.25;ReadPosRankSum=-1.896;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	202557702	rs6725443	C	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	202566741	rs7603563	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	202569992	rs3219171	A	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	202570232	rs3219170	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	202574825	rs1210940	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	202575821	rs3219168	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	202575907	rs2882231	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	202580370	rs3219167	G	A	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	202592059	rs115270366	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	202593929	rs113406595	GA	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.667;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	202688293	rs4675229	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	202712095	rs917958	A	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	202736953	rs35273085	G	A	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	202737083	rs13032025	A	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	202741247	rs2072503	G	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	202741256	rs4675235	A	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	202741269	rs4675236	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	202741277	rs2072502	C	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.32;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	202755720	rs59041020	C	T	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	202939654	rs10221698	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	202955454	rs1568535	G	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	202964380	rs2882486	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	202964528	rs2350722	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	202964986	rs6755174	C	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	202965222	rs6726731	A	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.16;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	202978198	rs373306982	GT	G	937.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:8,57:0.88:65
chr2	203000716	rs72189555	T	TAA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.11;ReadPosRankSum=-0.481;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	203242031	.	A	G	344.77	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	203651278	rs55689177	CA	C	280.06	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr2	203661779	rs6704822	A	G	118.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	203680554	rs374333116	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.606;QD=1.34;ReadPosRankSum=1.912;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	203690387	rs1344959	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	203693559	rs4675296	C	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	203748544	rs34788166	A	AT	591.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.232;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr2	203748594	rs10196719	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	203749392	rs3050865	C	CTTT	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	203820275	rs3731695	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	203880992	rs2351524	T	C	119.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	203921270	rs4673241	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	203991488	rs6725469	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	203996635	rs9677190	T	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	203996870	rs6748898	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	204002809	rs10180815	A	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	204054882	rs200397429	TACACACACACACACACAC	T,TAC	821.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,14,9:0.61,0.39:23
chr2	204062061	rs4675323	A	G	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	204090887	rs2351773	C	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	204111394	rs13015873	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	204111398	rs10586509	GTTAA	G	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	204111443	rs6435176	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	204111705	rs6751894	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	204116690	rs2043449	C	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	204116887	rs2351771	T	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	204154686	rs10170454	A	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	204206977	rs4675333	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	204216255	.	GTT	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-0.210;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	204239723	rs78353544	G	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	204732850	rs231776	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	205829991	rs236843	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	205912210	rs7563474	C	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	205912403	rs1510765	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	205969023	rs2289024	A	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	205978114	.	A	G	115	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=4;MGOF=19;MMLQ=24;MQ=58.7;NF=4;NR=1;PP=115;QD=29.9542425094;SC=AATCCTGAGCAGGGGTGTGTG;SbPval=0.66;Source=Platypus;TC=5;TCF=4;TCR=1;TR=5;WE=205978125;WS=205978104;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	205978117	.	G	GGTGT	103	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=4;MGOF=19;MMLQ=24;MQ=58.7;NF=1;NR=1;PP=103;QD=53.0;SC=CCTGAGCAGGGGTGTGTGTGT;SbPval=0.74;Source=Platypus;TC=4;TCF=2;TCR=2;TR=2;WE=205978125;WS=205978104;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr2	205988943	rs41272651	T	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	206036918	rs736320	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	206041366	rs11329569	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=0.006;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	206050355	rs62172732	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	206166580	rs11686273	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	206364487	rs11687914	T	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	206364791	rs11683289	C	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	206418032	rs6730102	G	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	206480054	rs13387277	C	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	206480353	rs80119103	C	A	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	206481612	rs35710107	TGA	T	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=32.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	206581033	rs849541	G	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	206590879	rs73064192	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	206592534	rs2241157	T	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	206608039	rs849568	T	C	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	206614646	rs10932123	T	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	206630073	rs35659576	AAC	AACAC,A	227.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	0/1:0.42:19
chr2	206631554	rs7600985	T	A	554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=0.449;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr2	206911191	rs34828561	C	CA	280.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-2.081;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	206921451	rs818009	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	207008675	rs35409448	C	CT	2564.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.72;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	207008763	rs1127566	C	A	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	207012483	rs11548670	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	207023595	rs4147709	C	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	207023620	rs4147708	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	207024886	rs113729178	G	GC	173.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=24.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	207025444	rs11689362	T	C	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr2	207027407	rs35430253	C	CT	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	207041053	rs3732083	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	207452151	rs3832131	GT	G	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	207472606	rs5838036	G	GT	164.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	207472683	rs78458117	C	CTA	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	207527840	rs2115591	G	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	207559435	rs58202409	AT	A	1084.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	207559599	rs16838593	T	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	207559646	rs71410896	G	GA	285.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.794;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=1.287;SOR=0.078;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr2	207569715	rs16838626	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	207570560	rs201045711	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	207572186	rs144139666	G	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	207575364	rs148967549	A	T	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	207583169	rs16838693	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	207613980	rs13427620	G	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	207621759	rs1990849	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	207629904	rs3828294	G	A	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	207636068	.	A	C	571.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	207636717	rs34709212	G	A	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	207653455	.	C	CA	26	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=0.9997;HP=17;HapScore=2;MGOF=0;MMLQ=27;MQ=57.15;NF=2;NR=0;PP=26;QD=14.5;SC=GACCACATCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=207653463;WS=207653445;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	207653770	rs57475447	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	207820319	rs6719240	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	207824548	rs1453168	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	207833848	rs7582092	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	207833983	rs7582305	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	207946141	rs2287507	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	207946164	rs2287506	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	207974818	rs2244923	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	207998800	rs2284934	C	T	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	207998878	rs10681871	A	ATT	418.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.473;QD=11.31;ReadPosRankSum=0.123;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr2	208031992	rs1269424	T	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	208447642	rs12478868	A	T	1237.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.35;ReadPosRankSum=-0.312;SOR=0.315;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr2	208477852	rs2551949	G	A	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	208477956	rs2709416	C	T	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	208478055	rs17520056	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	208633413	rs4675711	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	208693261	rs720632	C	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	208693307	rs720631	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	208717440	rs10932211	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	208811097	rs10932215	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	208986385	rs2305429	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	208989037	rs2242074	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	209007559	rs796287	T	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	209010558	rs2854723	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	209010777	rs3214759	GC	G	4402.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr2	209028191	rs796280	C	T	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr2	209030578	rs796281	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	209033097	rs13414543	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209033173	rs7562540	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209035485	rs6435420	T	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209035658	rs6748431	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	209035849	rs4292037	A	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209036605	rs10932244	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	209036712	rs10804166	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	209036778	rs6435421	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	209045545	rs199688558	TA	T	2529.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	209046067	rs149298545	C	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	209046162	rs6435425	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209046162	.	GTA	ATG	271	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=1;HapScore=2;MGOF=21;MMLQ=27;MQ=60.0;NF=1;NR=6;PP=271;QD=46.3525535517;SC=AATAAAATTGGTATGATTGTT;SbPval=0.65;Source=Platypus;TC=7;TCF=1;TCR=6;TR=7;WE=209046172;WS=209046152;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	209046164	rs6435426	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209101905	rs57383668	GA	G	247.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209108317	rs34218846	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	209113192	rs11554137	G	A	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	209113296	rs73070954	C	T	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	209138946	rs6705163	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209163556	rs7569723	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	209168853	rs893256	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	209176807	rs12624141	T	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	209182499	rs113250005	T	TA	38.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	209182548	rs10497898	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	209182677	rs112715599	CAGTTCAGCAGTGA	C	2935.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	209184844	rs934712	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	209184980	rs10932258	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	209184999	rs10932259	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209189912	rs893255	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209190330	rs2363468	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	209190519	rs893254	A	T	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	209190528	rs893253	C	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	209190632	rs999890	T	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr2	209190649	rs999891	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr2	209191082	rs1529979	C	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	209191099	rs1529978	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	209194696	rs1437414	G	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	209195099	rs1866045	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209195133	rs12694109	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	209198000	rs11885913	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209199945	rs2363469	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	209201739	rs7596571	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	209204319	rs17699838	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209209827	rs2304544	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	209209997	rs2043718	C	T	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	209214770	rs2118297	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	209215448	rs994696	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	209215586	rs994697	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	209216231	rs73062582	A	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209219190	rs6435453	A	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	209219235	rs73062583	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.61;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	209220157	rs10208191	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209224874	rs11357589	CA	C	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	209293168	rs962595	C	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	209345944	rs34570534	CT	C	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=1.363;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr2	209346020	rs61511423	T	TGCAACCTC	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209358027	rs3820900	C	T	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	209358034	rs77919204	G	A	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	209358415	rs60805624	GG	CT	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	210517785	rs2254169	C	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	210517915	rs2271252	T	C	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	210555264	rs3768813	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	210557380	rs6720659	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr2	210557542	rs741007	G	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	210558162	rs741006	G	A	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	210559960	rs2239672	G	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr2	210561533	rs3217099	C	CAGA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	210588500	rs2284359	A	C	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	210594721	rs201238994	T	TAA	271.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	210594722	rs77505136	T	A	478.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.89;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	210636747	rs116428671	G	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	210654225	rs35337581	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	210678691	rs2159745	T	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	210745681	rs2370838	C	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	210786137	rs9288415	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	210843383	rs2075117	G	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	210846867	rs2723222	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	210882171	rs2075116	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	210882677	rs2723213	C	T	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	211069438	rs263677	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	211162998	rs7592060	G	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	211163063	rs112894708	T	TACACACAC	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=48.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	211167132	rs2292300	A	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	211168181	rs35179660	T	TC	77.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	211168346	rs12469767	A	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	211302685	rs13420747	T	C	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	211319824	rs2287432	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	211340937	rs3214410	A	AT	205.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	211444533	rs35833900	G	GGT	1176.74	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:5,41:0.89:46
chr2	211456637	rs1047883	A	G	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	211456637	.	ACC	GCT	1574	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=22;NR=25;PP=1574;QD=34.6269760609;SC=CTTGGACAACACCCTCCCTGC;SbPval=0.61;Source=Platypus;TC=48;TCF=23;TCR=25;TR=47;WE=211456647;WS=211456627;set=Platypus	GT:AD:AF:DP	1/1:1,47:0.98:48
chr2	211456639	rs2229589	C	T	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	211470086	rs2277909	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	211473070	rs2287600	G	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	211481257	rs2287599	C	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	211513118	rs4673540	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	211514995	rs34449727	G	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	211521227	rs58225253	CT	C	456.84	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:4,30:0.88:34
chr2	211523457	rs6435580	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	211527827	rs5838215	GT	G	1614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.054;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:22,106:0.83:128
chr2	211532800	.	ATG	A	77.80	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	211533070	rs10932347	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	212252777	.	T	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=104.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=4.662;SOR=7.053;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr2	212252809	rs934607	G	A	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	212285103	rs2289086	T	C	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	212286934	rs3791709	A	T	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	212295875	rs6710946	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	212488870	rs3215298	G	GC	1295.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	212578379	rs67894136	TA	T	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.089;QD=9.45;ReadPosRankSum=-0.264;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr2	212578519	rs35123918	A	T	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	213914343	rs2165444	C	T	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	214012405	rs6738070	A	C	1392.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.434;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-0.141;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:8,74:0.90:82
chr2	214228792	rs12469417	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	214228959	rs4146048	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	214233812	rs6752347	C	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	214727150	rs2042790	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	214727221	rs2042791	A	C	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	214727367	rs2042792	C	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	215013801	.	G	GTGTATATATA	187.87	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	215102929	rs1912207	T	A	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	215595512	rs12614960	C	T	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	215595645	rs16852600	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	215595765	rs6435849	C	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	215595861	rs34664471	G	GA	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	215595872	rs28685662	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	215632124	rs5031008	ATT	A	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	215632155	rs5031009	T	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	215632192	rs5031011	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	215632255	rs2070094	CA	TG	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	215634055	rs6704780	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	215645464	rs2229571	C	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	215674090	rs35933323	T	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	215674224	rs1048108	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	215674323	rs1129804	C	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	215674341	rs17489363	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	215674371	rs34732883	C	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	215802333	.	T	G	1146.77	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	215848034	rs7608150	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	215851246	rs7559069	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	215862383	rs1980844	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	215862633	rs1326748	C	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	215872334	rs940279	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	215874965	rs6733264	G	T	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	215875251	rs1409607	A	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	215876166	rs7560008	A	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	215878240	rs7594353	G	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.21;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	215878246	rs10192100	C	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	215880108	rs6753310	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	215901592	rs1474331	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	215901774	rs17501837	C	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	215919166	rs10194592	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	215928972	rs1523721	G	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	215940242	rs6711179	T	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	215976231	.	A	T	21	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=1;PP=21;QD=18.5904041824;SC=ACAAAAAAAAATTTTTGAAAT;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=215976239;WS=215976221;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	216176807	rs4535042	T	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	216182769	rs4672766	A	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	216190020	rs2372536	C	G	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	216190691	rs2177737	A	C	375.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=1.125;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr2	216211712	rs10932609	A	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	216212279	rs4673992	G	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	216213689	rs61469558	A	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.81;ReadPosRankSum=-1.666;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:2,20:0.91:22
chr2	216214492	rs10498036	T	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	216235089	rs1250209	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	216236532	rs10804241	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	216237929	rs2289199	A	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	216240126	rs3214672	AAC	A	1241.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=35.48;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	216242917	rs1132741	T	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	216243832	rs1250204	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	216248305	rs1250203	G	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	216248707	rs35639338	TAA	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	216249587	rs13652	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	216251697	rs35343655	G	A	41.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	216256615	rs6709607	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	216262621	rs6725958	A	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	216263926	rs2692224	C	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	216263938	rs3832178	C	CT	519.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	216269031	rs7575551	G	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	216269033	rs72943909	T	G	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.71;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	216272819	rs7570208	C	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	216272900	rs2577301	T	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	216272907	rs7596677	A	T	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	216274853	rs5838511	AAC	A	2327.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr2	216283958	rs3796123	T	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	216289765	rs374323546	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	216295312	rs1250241	T	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	216299281	rs1250246	A	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	216299550	rs2577290	G	A	3587.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.177;QD=24.74;ReadPosRankSum=-1.323;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr2	216299551	rs2692234	C	A	3587.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.177;QD=24.74;ReadPosRankSum=-1.340;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr2	216299571	rs10648691	T	TTAC	2944.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	216299629	rs1250247	C	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	216300482	rs1250259	T	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	216861273	rs2303845	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	216878008	rs1864253	C	G	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	216903894	rs10197542	A	C	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	216904019	rs9288513	A	T	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	216923679	rs1429148	C	T	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr2	217012901	rs207906	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	217055171	rs12470053	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	217069151	rs1438162	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	217329432	rs34170201	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.568;QD=2.24;ReadPosRankSum=-0.688;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	217364452	rs284573	C	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	217364539	rs284572	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	217498219	.	C	CCGCCG	416.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	217498290	rs5838590	C	CGCCGCTGCT	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	217541582	rs2160549	T	C	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	217736131	rs2241191	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	218577575	rs1835333	T	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	218604247	rs4672848	A	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	218604302	.	G	GA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.942;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr2	218604356	rs4294980	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	218674697	rs918949	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	218675144	rs918950	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	218675199	rs1035672	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	218683154	rs2571445	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	218683203	rs2552525	C	T	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	218683257	rs2571442	A	G	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	218694510	rs55877504	CT	C	1492.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	218694512	rs55694913	T	G	1501.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	218694680	rs368071408	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	218706723	rs918951	G	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	218706857	rs918952	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	218707083	rs60916851	A	AC	112	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	218712102	rs55763335	A	G	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	218712306	rs1004814	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	218712606	rs1364641	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr2	218712726	rs1364642	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	218712886	rs375721540	GGCT	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.303;QD=0.28;ReadPosRankSum=-1.578;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:118,11:0.09:129
chr2	218712918	rs3796031	C	T	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	218712936	rs3796032	C	T	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	218713282	rs3796033	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr2	218744420	rs114656561	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	218745685	rs10199795	G	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	218750453	rs35040165	A	AG	1065.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	218758123	.	G	GCACACACA	231.82	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.36;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	218768422	rs3791936	T	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	218770003	rs7600493	G	A	5653.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-1.219;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr2	218770984	rs2288170	C	T	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	218801767	rs4674232	C	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	218801898	.	TCTACTCCC	T	545	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=0.9998;HP=1;HapScore=1;MGOF=17;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=545;QD=279.5;SC=CAACACTCTGTCTACTCCCCT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=218801913;WS=218801888;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr2	218843678	.	G	A	486.77	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	218925283	rs3181380	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	218925553	rs60743553	A	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	218925572	rs16858606	T	C	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	218935299	rs13385042	T	C	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	218937850	rs55900869	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	218938244	rs56200756	T	C	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	218940436	rs79542221	C	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	219000310	rs2230054	C	T	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr2	219029108	rs2234671	C	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	219104316	.	A	AT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=10.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=2.795;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	219128506	rs2292549	C	T	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:73,119:0.62:192
chr2	219139573	rs6734242	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	219140288	rs2292550	G	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr2	219141888	rs192269123	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	219142023	rs2168703	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	219142491	rs2271543	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr2	219142594	rs3817266	C	T	6351.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:184,306:0.62:490
chr2	219143229	rs2292551	G	A	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:224,329:0.59:553
chr2	219143327	rs2292552	T	C	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:161,199:0.55:360
chr2	219144089	rs12987180	G	A	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr2	219144149	rs12987219	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	219144815	rs2045435	T	C	18677.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-0.710;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:2,735:1.00:737
chr2	219146607	rs7585702	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr2	219146868	rs2292554	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	219146882	.	G	T	336.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	219153982	rs34353396	T	C	451.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	219153983	rs10707182	GA	G	442.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	219188237	rs7596269	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr2	219204854	rs73990423	G	A	7357.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:171,347:0.67:518
chr2	219205584	.	C	G	1752.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr2	219209393	rs1350336	A	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	219221801	rs368507846	C	T	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.823;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:350,149:0.30:499
chr2	219221982	.	G	GTCTCTCTCTCTCTCTCTCTCTC	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-0.068;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	219231807	rs3845833	C	T	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	219232388	rs56326225	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr2	219252208	rs3731863	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr2	219252630	rs17221959	C	T	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:160,170:0.52:330
chr2	219254622	rs2695342	A	G	4582.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:182,225:0.55:407
chr2	219257688	rs2045433	T	C	3575.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:96,168:0.64:264
chr2	219259270	rs2279015	G	A	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr2	219259813	rs17235416	ATGTG	A	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	219263277	rs2695344	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	219265094	rs2579958	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	219265136	rs11463820	T	TC	5260.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	219265730	rs139935554	G	GGCCGCC	1513.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr2	219266160	rs74435244	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr2	219266204	rs2252235	T	C	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,94:0.48:196
chr2	219267913	rs2227258	A	G	16561.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:1,633:1.00:634
chr2	219288382	rs4672893	A	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr2	219294258	rs6720403	A	C	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:183,111:0.38:294
chr2	219296545	rs17572485	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:152,81:0.35:233
chr2	219301221	rs115735389	C	T	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:142,181:0.56:323
chr2	219313891	rs191262689	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	219319657	rs6436058	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	219320207	rs3932856	C	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	219320233	rs139275139	GAAA	G	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.613;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr2	219321692	rs5838699	CA	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.771;QD=9.15;ReadPosRankSum=-0.616;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	219327898	.	AACACACACACACAC	A,AACACACAC	414.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.70;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:0,5,6:0.45,0.55:11
chr2	219339283	rs549026	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr2	219350358	rs141872712	CAAA	C	906.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.862;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,47:0.66:71
chr2	219353195	rs10932782	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr2	219394606	rs58779298	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.987;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chr2	219411652	rs73077126	G	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,94:0.58:162
chr2	219414645	rs139610621	A	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,92:0.69:133
chr2	219433597	rs526897	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr2	219445860	rs34214861	GAA	G	1681.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr2	219447612	rs111430766	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.594;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	219447912	rs2952825	A	G	2391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.527;MLEAC=2;MLEAF=1.000;MQ=60.82;MQRankSum=0.385;QD=29.90;ReadPosRankSum=-1.543;SOR=0.380;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr2	219447956	.	GTCTCTCTCTC	G	1257	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=133;MMLQ=24;MQ=46.34;NF=0;NR=19;PP=1257;QD=66.3157894737;SC=GTGTGTGTGTGTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=19;WE=219447987;WS=219447934;set=Platypus	GT:AD:AF:DP	1/0:5,19:0.79:24
chr2	219449484	rs73077149	C	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr2	219480804	rs485765	G	C	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr2	219498759	rs7574429	T	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr2	219500879	rs6710896	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr2	219501133	rs2278530	G	A	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:352,214:0.38:566
chr2	219508988	rs3770214	T	C	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:74,139:0.65:213
chr2	219520895	rs3731872	T	C	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:90,158:0.64:248
chr2	219525582	rs6722185	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	219527005	rs2303561	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	219527866	rs35843327	T	C	5512.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:148,266:0.64:414
chr2	219528995	rs13022721	T	C	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:82,153:0.65:235
chr2	219529348	rs2243911	C	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	219529609	rs10172099	A	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chr2	219532903	rs2556384	C	T	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	219532903	.	CGG	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=27;MQ=60.0;NF=70;NR=63;PP=2947;QD=20;SC=ACTGCTGAAGCGGTCCACCCC;SbPval=0.58;Source=Platypus;TC=139;TCF=72;TCR=67;TR=133;WE=219532913;WS=219532893;set=Platypus	GT:AD:AF:DP	1/1:6,133:0.96:139
chr2	219532905	rs2556385	G	A	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	219540243	rs58481209	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.247;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	219541056	rs2556388	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	219544388	rs1863703	A	G	3247.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:404,199:0.33:603
chr2	219545309	rs2303565	T	C	18403.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr2	219554526	.	A	G	2163.77	.	AC=1;AF=0.500;AN=2;DP=164;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr2	219555262	rs1344642	G	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	219561929	rs56148168	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr2	219602499	rs3731877	G	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	219602819	rs3731876	G	A	10994.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	219605118	rs7562426	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	219609776	rs2272191	G	A	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	219609995	rs2272190	G	C	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr2	219610322	rs2272189	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	219610433	rs586194	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr2	219612210	rs115570749	T	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.75;ReadPosRankSum=0.306;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	219612282	rs2272188	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	219613866	rs74536167	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr2	219616610	rs72027596	C	CTTT	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=1.217;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	219616627	rs71913870	C	CT	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.81;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219616633	rs59713184	C	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219616681	.	A	G	83	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=2;MGOF=85;MMLQ=27;MQ=52.22;NF=0;NR=5;PP=83;QD=23.5542425094;SC=CCCAGGCTGGAGTGCAATGGT;SbPval=1.0;Source=Platypus;TC=13;TCF=2;TCR=11;TR=5;WE=219616689;WS=219616671;set=Platypus	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	219618237	rs6436073	A	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	219618497	rs6757772	T	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr2	219678965	rs73991002	A	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:98,56:0.36:154
chr2	219688732	rs73993309	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,60:0.71:85
chr2	219688886	.	C	T	722.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr2	219691566	rs1467320	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	219692133	rs6706738	A	G	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:83,118:0.59:201
chr2	219692527	rs11385903	G	GC	9097.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	219692790	rs5838710	A	AG	6207.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	219694917	rs12328317	G	A	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:61,111:0.65:172
chr2	219696014	rs650898	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr2	219696545	rs6710262	T	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:62,110:0.64:172
chr2	219724866	rs75223871	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr2	219738571	rs114417760	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:140,72:0.34:212
chr2	219846328	rs2301296	C	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr2	219855732	rs61348556	A	G	3768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-1.483;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:337,211:0.39:548
chr2	219857868	.	GCGCC	G	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=63.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.186;SOR=5.667;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr2	219857875	.	GCCC	G	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=55.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=2.600;SOR=5.417;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr2	219857880	.	GC	G	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=51.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.974;SOR=5.417;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	219857883	.	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=38.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.85;ReadPosRankSum=-1.163;SOR=5.131;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	219866570	rs114574620	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	219867977	rs11893183	T	C	3785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.843;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:114,174:0.60:288
chr2	219874288	rs59038516	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr2	219878319	rs115158574	C	T	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:221,152:0.41:373
chr2	219878354	rs116651443	A	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:173,100:0.37:273
chr2	219878756	rs9967806	G	A	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:66,133:0.67:199
chr2	219888259	rs11891205	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	219888293	rs359978	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.80;ReadPosRankSum=-1.876;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	219890979	rs7560948	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr2	219895346	rs78069740	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	219895548	rs56411706	C	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:242,108:0.31:350
chr2	219895588	rs56068521	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:143,56:0.28:199
chr2	219903258	rs6736922	T	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:166,90:0.35:256
chr2	219903723	rs4674354	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr2	219905247	rs3736403	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:176,75:0.30:251
chr2	219920037	rs394452	A	G	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	219920346	rs61747697	G	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:180,89:0.33:269
chr2	219920412	rs3731881	A	G	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:209,143:0.41:352
chr2	219922073	rs34694069	G	GC	1001.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr2	219923410	rs71974827	G	GAGA	2767.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:144,77:0.35:221
chr2	219941063	rs897477	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr2	219942026	rs35270667	T	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr2	220028900	rs6753739	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr2	220034251	rs79578215	C	G	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:103,161:0.61:264
chr2	220037393	rs4674361	A	G	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	220040216	rs368784782	CA	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.365;QD=1.75;ReadPosRankSum=1.878;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr2	220041609	rs367631524	C	A	4137.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:112,198:0.64:310
chr2	220071803	rs6714820	C	G	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:73,110:0.60:183
chr2	220071879	rs66491679	TG	T	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr2	220072766	rs4674366	G	T	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	220078496	rs2139823	T	C	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-1.131;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:81,93:0.53:174
chr2	220078564	rs149363094	G	C	4735.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:171,232:0.58:403
chr2	220083279	rs1109866	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:70,123:0.64:193
chr2	220083453	rs1109867	G	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	220085845	rs2276633	A	G	7786.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:241,380:0.61:621
chr2	220096903	rs3817424	A	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,67:0.59:113
chr2	220097257	rs61747682	G	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr2	220098758	rs73991426	A	G	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr2	220100212	rs77280560	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.356;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr2	220100623	rs55727457	T	C	5978.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:157,279:0.64:436
chr2	220100683	rs2293078	C	G	7498.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:188,346:0.65:534
chr2	220100922	rs56927225	A	G	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr2	220104598	rs73991428	A	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr2	220107665	rs3755049	AA	GC	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr2	220108300	rs11552796	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr2	220112765	rs56019765	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	220113242	rs7601549	T	G	8486.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:224,388:0.63:612
chr2	220116509	rs45488900	G	T	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr2	220117458	rs1024131	G	A	5502.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:140,255:0.65:395
chr2	220118076	rs60456844	CG	C	1651.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr2	220118672	rs61692384	CG	C	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,16:0.84:19
chr2	220136059	rs7580926	C	A	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:123,212:0.63:335
chr2	220136155	rs7594971	T	C	17972.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr2	220136239	rs77762019	C	T	8300.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:221,387:0.64:608
chr2	220136351	rs3731892	G	C	15475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-2.250;QD=24.18;ReadPosRankSum=-0.163;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:231,409:0.64:640
chr2	220136360	rs56105486	C	T	15046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-3.488;QD=24.67;ReadPosRankSum=0.382;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:226,384:0.63:610
chr2	220136371	rs3731894	T	C	7471.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:210,352:0.63:562
chr2	220145286	rs2276638	C	T	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	220146402	rs3731896	C	T	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	220146609	rs3832110	C	CG	1785.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	220146651	rs3731897	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,28:0.34:83
chr2	220147732	rs2276639	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr2	220147767	rs3821038	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr2	220147847	rs3821039	G	A	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:80,135:0.63:215
chr2	220156311	rs115801084	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr2	220159894	rs59726321	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr2	220162054	rs17847405	G	A	4645.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:102,210:0.67:312
chr2	220168616	rs2271594	C	T	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:66,113:0.63:179
chr2	220172576	rs7591986	A	C	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr2	220173905	rs57623838	C	T	17714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=1108;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=2.364;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:275,807:0.75:1082
chr2	220174056	rs6736979	T	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr2	220193917	rs3731895	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr2	220194247	rs3832109	A	AATT	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	220195446	rs6707009	C	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	220197207	rs2048737	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	220197321	rs2385405	C	T	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr2	220197388	rs2385404	C	A	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	220197492	rs2385402	C	G	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	220197821	rs5838736	CTA	C	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	220197929	rs138579161	CTTT	C	872.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=9.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=1.059;SOR=3.545;set=HC	GT:AD:AF:DP	0/1:4,32:0.89:36
chr2	220239534	rs3731904	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr2	220239561	rs3731905	C	G	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=1.021;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:22,64:0.74:86
chr2	220246218	rs6436148	T	C	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr2	220249299	rs5838737	C	CT	2117.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:3,95:0.97:98
chr2	220249329	rs2002892	C	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	220250147	rs907679	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr2	220250322	rs878437	C	A	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr2	220250826	rs2271456	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	220250897	rs11352428	AG	A	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	220251178	rs2271457	T	C	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	220252287	rs138394024	CTCG	C	8499.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	220264543	rs58721028	C	CAT	8138.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	220283259	rs1318299	A	G	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	220283277	rs2017800	T	C	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	220283826	rs907677	T	G	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	220285309	rs1058261	C	T	10732.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	220285666	rs12920	G	C	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr2	220286142	rs1058284	G	A	8111.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	220316579	rs4674399	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	220330661	rs1976617	A	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	220333950	rs10167209	T	C	8438.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr2	220344716	rs61743627	G	A	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr2	220354359	rs192326487	G	A	25629.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-1.080;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:3,989:1.00:992
chr2	220356806	rs907146	C	T	12143.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	220361265	rs2385541	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	220362899	rs2029251	C	G	14016.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr2	220371181	rs10932808	T	A	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	220397465	rs142798656	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	220397713	rs139742118	G	A	4729.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:126,228:0.64:354
chr2	220397811	rs6731344	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	220397825	rs6716083	C	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	220399951	rs2276643	A	G	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.611;QD=12.27;ReadPosRankSum=1.286;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:58,92:0.61:150
chr2	220400063	rs141949099	GT	G	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=1.371;QD=12.73;ReadPosRankSum=-0.015;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,41:0.53:78
chr2	220400159	rs150579390	TTGTG	T	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	220401732	rs3770237	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:62,114:0.65:176
chr2	220401751	rs2385538	G	A	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:102,156:0.60:258
chr2	220402624	rs11689270	G	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.752;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr2	220402665	rs6436153	C	A	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:51,93:0.65:144
chr2	220402671	rs11689281	G	T	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.310;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:102,50:0.33:152
chr2	220402680	rs11695248	T	C	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.423;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:109,61:0.36:170
chr2	220404381	rs1976616	A	G	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	220404648	rs1043833	C	T	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:78,147:0.65:225
chr2	220404726	rs1043832	G	A	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:49,108:0.69:157
chr2	220405230	rs6436154	G	A	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:111,224:0.67:335
chr2	220405321	rs6436155	T	C	7404.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr2	220406239	rs13004994	T	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr2	220406722	rs3731912	T	C	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:243,136:0.36:379
chr2	220406944	rs7581251	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.84;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	220407918	rs10932810	G	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr2	220409701	rs10932811	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr2	220412256	rs8179770	T	C	9379.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	220413661	rs12996466	C	T	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	220414016	rs6436156	C	T	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.32;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	220414016	.	CCCT	TCCC,TCCT	673	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=12,29;NR=28,57;PP=500,673;QD=13.8366968716;SC=GGCCACCAGACCCTGCTTATC;SbPval=0.67;Source=Platypus;TC=88;TCF=29;TCR=59;TR=40,86;WE=220414027;WS=220414006;set=Platypus	GT:AF:DP	0/1:0.45:88
chr2	220414019	rs13023533	T	C	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.730;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:50,66:0.57:116
chr2	220415595	rs146790993	GGA	G	2587.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:83,102:0.55:185
chr2	220415646	rs1043582	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr2	220415717	rs3731918	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	220415752	rs6745782	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	220416164	rs6761575	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	220416570	rs4672931	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	220416591	rs4672932	C	T	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	220416803	rs4672933	A	T	7759.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr2	220416942	rs34490902	G	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:58,141:0.71:199
chr2	220416967	rs4672934	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.775;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr2	220417228	rs60549465	G	T	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:66,103:0.61:169
chr2	220417266	rs59332477	C	T	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:101,148:0.59:249
chr2	220419236	rs10932813	T	C	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	220419339	rs10932814	T	C	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr2	220420956	rs10932816	A	G	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	220421417	rs1983210	C	G	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	220422400	rs2278200	C	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr2	220422774	rs2278201	A	G	4603.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:136,223:0.62:359
chr2	220427996	rs11904583	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	220431919	rs4674412	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	220466344	rs11405075	G	GT	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=2.488;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:50,37:0.43:87
chr2	220471116	rs633200	C	G	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr2	220474315	rs73089148	A	C	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	220479312	rs624773	T	C	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	220479787	rs58316234	T	C	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr2	220480639	rs640807	T	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	220480657	rs58365530	GA	G	933.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	220480693	rs665845	G	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	220493323	rs73072583	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	220494118	rs597306	A	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	220495167	rs612078	A	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	220500321	rs2305055	C	G	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr2	220500423	rs589767	A	G	4660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=-2.238;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:118,123:0.51:241
chr2	220500426	rs639214	A	G	4660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.26;ReadPosRankSum=-2.483;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:118,124:0.51:242
chr2	220505421	rs72961491	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.521;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr2	220506522	rs2305054	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr2	220586231	rs9288551	C	G	34.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.70;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	220586367	rs368069746	AAG	A	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.517;QD=6.18;ReadPosRankSum=0.515;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr2	220771223	rs4674470	C	T	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	220771290	rs4674471	G	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	220771310	rs4674472	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220771378	rs4674473	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	222290902	rs2303901	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr2	222308226	rs10498111	T	C	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:180,251:0.58:431
chr2	222320427	rs2288627	G	A	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:47,121:0.72:168
chr2	222321225	rs6718949	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	222367483	rs61623527	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr2	222431493	.	GAGA	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.387;QD=0.57;ReadPosRankSum=-0.651;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr2	222431521	rs35574019	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.981;QD=9.26;ReadPosRankSum=-0.062;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr2	222431574	rs56798546	G	A	180.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	222433305	.	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=121.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=3.569;SOR=7.658;set=HC	GT:AD:AF:DP	0/1:106,45:0.30:151
chr2	222434898	rs11687492	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr2	222437136	rs11381414	A	AG	144.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	223065753	.	TAC	T	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.132;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:231,46:0.17:277
chr2	223066017	rs199895781	A	AC,ACC	2351.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;set=Intersection	GT:AF:DP	1/2:0.60,0.33:96
chr2	223159119	rs2303948	C	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr2	223161624	rs12694578	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr2	223161889	rs12623857	A	G	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	223162024	rs6754024	T	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	223339533	rs200436592	CTT	C	210.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.16;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	223386425	rs3820782	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	223386468	rs3739001	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr2	223386557	rs3739000	A	G	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:81,151:0.65:232
chr2	223386578	rs3738999	C	T	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:83,164:0.66:247
chr2	223423362	rs4674664	A	G	11200.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	223423653	rs76841138	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr2	223436607	rs7185	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	223488587	rs112456913	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	223493425	rs74493825	T	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.700;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr2	223493435	rs2019357	G	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	223520797	rs12467164	T	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:135,71:0.34:206
chr2	223520905	rs2166652	G	C	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	223520978	rs2044537	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	223536541	rs35959734	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr2	223553284	rs10498142	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	223554275	rs2044538	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	223559089	rs1868024	T	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	223574618	rs200261124	T	TA	983.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr2	223780921	rs12623448	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	223781017	rs60362808	AT	A	292.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	223781018	rs35780866	T	A	59.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=2.317;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	223785504	rs6739824	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	223785740	rs6756323	A	G	6203.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:175,299:0.63:474
chr2	223785846	rs6728234	G	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	223787559	rs11891410	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	223787691	rs10932978	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	223793471	rs1550419	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	223793480	rs1550420	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	223798173	rs34942789	T	TC	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	223799207	rs935030	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	223806189	rs35090606	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.722;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	223806194	rs1550426	C	T	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.181;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	223917617	rs12720447	C	T	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:65,144:0.69:209
chr2	223917812	rs10201907	T	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	223918080	rs10189762	C	G	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	224464066	rs75160800	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	224629851	rs11455542	C	CT	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	224629876	rs10644138	C	CCAT,CCATCAT	3279.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	1/2:0.44,0.53:79
chr2	224637967	rs16865186	A	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:108,70:0.39:178
chr2	224640803	rs59118867	C	CAA	11145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=21.19;ReadPosRankSum=0.789;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:231,295:0.56:526
chr2	224640863	rs11902103	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:212,139:0.40:351
chr2	224640896	rs55944411	T	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:110,65:0.37:175
chr2	224744787	rs78591049	G	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr2	224758906	rs625150	C	T	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	224760359	rs150347314	TGA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.565;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:117,15:0.11:132
chr2	224760494	rs597349	G	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	224763816	rs530065	C	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	224765894	rs604990	G	A	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	224777094	rs541712	T	C	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;MQ=60.29;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	224777105	rs113054269	G	GTGAT	6816.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	224822043	rs3738960	C	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	224822106	rs16865356	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr2	224824695	rs35331337	T	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=1.932;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:71,37:0.34:108
chr2	224831567	rs112912106	G	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.651;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr2	224844919	rs729631	C	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	224845162	rs76741124	C	T	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr2	224862821	rs3795879	C	T	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:406,190:0.32:596
chr2	224862842	rs12457	A	G	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.882;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:400,179:0.31:579
chr2	224863090	rs10170379	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr2	224866690	rs11902594	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	225346646	rs2070127	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=0.252;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	225362361	rs188422174	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	225365056	rs3768889	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	225367669	rs3754629	C	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	225368321	rs3738951	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	225376034	rs11686067	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.468;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	225400185	rs3832047	CCTTCAA	C	5319.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	225449893	.	GGGCGGC	G	1740.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.25;QD=42.46;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	225664782	rs77823647	TAAA	T	798.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	225664818	rs144092010	C	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.818;QD=8.18;ReadPosRankSum=0.038;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	225665074	rs1560859	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	225666573	rs139343043	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr2	225668717	rs141021252	ATG	A	1484.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.459;QD=25.16;ReadPosRankSum=-0.927;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:4,55:0.93:59
chr2	225670901	rs4674941	G	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	225672460	rs12328236	G	A	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	225684166	rs7572725	A	G	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	225688041	rs13405571	A	G	272.28	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	225688100	rs13431331	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	225695334	rs66902027	TG	T	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.510;QD=7.07;ReadPosRankSum=0.129;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	225699079	rs10177782	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.361;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	225702565	rs6724332	G	A	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	225709636	rs11682884	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr2	225709926	rs7577271	A	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	225714160	rs78656578	G	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-0.073;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr2	225714179	rs183173194	A	C	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.136;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr2	225716943	rs16866232	C	T	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr2	225717073	rs61731597	C	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:184,117:0.39:301
chr2	225717614	rs189400208	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	225719571	rs72305904	GCCAACCAA	G,GCCAACCAACCAACCAA	3315.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.18;QD=38.56;SOR=2.391;set=HC	GT:AD:AF:DP	1/2:0,31,55:0.36,0.64:86
chr2	225719781	rs145044043	G	GACAC,GACACACAC	768.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=48.05;SOR=2.049;set=HC	GT:AD:AF:DP	1/2:0,4,12:0.25,0.75:16
chr2	225727431	rs7589474	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr2	225740593	rs11891443	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	225750348	rs11337772	TA	T	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr2	225750681	rs116834969	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	225750753	rs10197805	T	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.776;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr2	225750861	rs2304336	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.978;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:58,25:0.30:83
chr2	225751256	rs71734299	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-2.160;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	225751293	rs2304334	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.368;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	225758440	.	C	CT	38	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5559;HP=9;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=38;QD=17.3333333333;SC=TAAATTTCACCTTTTTTTTTG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=225758448;WS=225758430;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	225848579	rs375205	T	C	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	225875158	rs590233	A	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	226273490	rs2048935	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	226273689	rs2048936	T	C	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:226,123:0.35:349
chr2	226447844	rs6436570	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	226491770	rs3748993	A	C	7394.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	226516346	rs11884382	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr2	226594092	rs76112246	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr2	227661043	rs1801123	T	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:131,99:0.43:230
chr2	227663185	rs3731597	G	A	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:295,121:0.29:416
chr2	227773354	rs74659334	G	GAC	340.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	227773466	rs3820928	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	227779191	rs3820927	C	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	227807202	rs6436641	G	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	227872182	rs2228557	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	227872995	rs2228555	T	C	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr2	227873028	rs13419076	A	G	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	227874957	rs4423583	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	227877037	rs10188770	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr2	227886773	rs3752895	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	227886925	rs3752896	C	T	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	227892619	rs2228556	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr2	227892658	rs16823077	T	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.510;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr2	227892720	rs2229813	C	T	2072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=1.805;SOR=0.402;set=HC	GT:AD:AF:DP	1/1:3,79:0.96:82
chr2	227895125	rs1917127	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	227896652	rs13423714	C	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	227896886	rs2229812	C	T	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:4,307:0.99:311
chr2	227896976	rs10203363	C	T	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	227897076	rs10179756	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	227912331	rs2272200	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	227914625	rs2272202	T	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	227914655	rs2272203	C	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	227914975	rs2251223	T	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	227915832	rs1800517	G	A	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr2	227916039	rs2894626	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	227917240	rs3769644	C	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	227917270	rs3769643	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	227922104	rs7567789	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.88;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	227922109	rs7567796	T	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.90;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	227922454	rs2141829	G	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	227924360	rs200590191	A	AT	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr2	227925097	rs6436650	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	227945181	rs35998949	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr2	227954599	rs2229814	G	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	227966148	rs16823202	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	227966298	rs59443812	T	TA	2315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.904;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:26,136:0.84:162
chr2	227966608	rs34509421	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	1663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.304;QD=9.19;ReadPosRankSum=1.828;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:131,50:0.28:181
chr2	227967830	rs10707643	GA	G	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.730;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	227968837	rs75586446	T	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	227973095	rs7600536	A	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	227973193	rs10174459	G	A	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:47,111:0.70:158
chr2	227973623	rs12475686	A	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr2	227973873	rs58363082	T	C	7074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-1.476;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:111,182:0.62:293
chr2	227973878	rs59938187	C	T	7011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.78;ReadPosRankSum=-1.371;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:107,176:0.62:283
chr2	227973892	rs73082223	T	C	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	227974113	rs6436654	A	G	11267.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr2	227974191	rs6436655	A	G	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.82;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	227974191	.	ACG	GCA,GCG	1185	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=24;MQ=60.0;NF=29,46;NR=47,73;PP=1185,509;QD=16.2956299324;SC=CAGTCCGGGCACGGTGGTTCA;SbPval=0.57;Source=Platypus;TC=119;TCF=46;TCR=73;TR=76,119;WE=227974201;WS=227974181;set=Platypus	GT:AF:DP	0/1:0.64:119
chr2	227974193	rs7578239	G	A	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=1.749;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:61,108:0.64:169
chr2	227976226	rs4519512	T	C	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.51;ReadPosRankSum=-0.805;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	227976230	rs4306711	C	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=0.671;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	227976298	rs59888959	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr2	227976584	rs55709703	G	A	43.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	228011966	rs16823259	G	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	228012054	rs16823262	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:108,49:0.31:157
chr2	228012183	rs16823264	A	G	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.321;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:224,79:0.26:303
chr2	228012201	rs2228558	G	A	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:209,69:0.25:278
chr2	228112186	rs4321358	A	G	3490.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.363;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=-0.801;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:2,141:0.99:143
chr2	228118403	rs12621551	T	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	228142038	rs59353048	GAA	G	502.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=-0.151;QD=20.95;ReadPosRankSum=1.831;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr2	228144706	rs6729152	G	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	228145543	rs6436671	C	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	228146991	rs72371878	AAT	A	402	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.668;QD=18.27;ReadPosRankSum=1.223;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	228149107	rs6436672	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	228154095	rs7593281	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	228158418	rs7569636	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	228158648	rs7608999	G	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	228159063	rs6436675	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	228159660	rs35803812	GT	G	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.936;QD=7.92;ReadPosRankSum=0.244;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr2	228194570	rs6706656	G	A	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	228194639	rs11384091	T	TA	277.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.43;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	228197368	rs4500938	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	228204929	rs4420693	C	T	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	228204982	rs4442987	C	T	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	228207625	rs6738078	G	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	228220528	rs12478005	T	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	228356364	rs11289047	GT	G	374.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.449;QD=10.71;ReadPosRankSum=2.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr2	228373404	rs11464376	A	AT	693.25	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr2	228399412	rs181930809	G	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	228399480	rs7588620	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	228416498	rs7598597	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	228416712	rs13426457	A	G	22700.77	.	AC=2;AF=1.00;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	1/1:1,896:1.00:897
chr2	228476253	rs2138402	C	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,65:0.44:147
chr2	228477814	rs7586824	G	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr2	228493211	rs28739019	G	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	228493338	rs6755667	CA	TG	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr2	228560728	rs34507036	A	G	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:101,170:0.63:271
chr2	228560800	rs11334205	GA	G	1053.73	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:224,89:0.28:313
chr2	228567111	rs71039629	AT	A	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.756;QD=8.12;ReadPosRankSum=-1.406;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	228678752	rs5839237	TC	T	2098.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr2	228678821	rs2135482	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	228680153	rs11422779	C	CT	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.201;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:44,46:0.51:90
chr2	228680337	rs3138114	C	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr2	228681050	.	G	T	940.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr2	228736341	rs56333712	C	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,95:0.65:146
chr2	228754534	rs144708880	C	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr2	228758554	rs1715828	A	T	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:116,201:0.63:317
chr2	228767618	rs2949014	T	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	228767631	rs2946931	G	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr2	228776996	rs3748862	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr2	228883721	rs3811514	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:70,133:0.66:203
chr2	228886413	rs11292511	TG	T	2049.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr2	228973383	rs67714256	A	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	228973660	rs7561798	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:118,64:0.35:182
chr2	228973723	rs11374866	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.479;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	228992850	rs6734166	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr2	228996637	rs4479423	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.168;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr2	228996650	rs4353646	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.151;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:62,25:0.29:87
chr2	228996672	rs4585022	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.661;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr2	229035351	rs12618108	T	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.844;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr2	229035357	rs4630759	T	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr2	229035442	rs4334483	A	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	230096837	rs6743582	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	230135527	rs1227013	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	230135711	rs67686611	G	GC	4734.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	230231889	rs2302769	A	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr2	230312216	rs140576705	G	A	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=0.197;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:53,125:0.70:178
chr2	230341815	rs57647946	A	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.222;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	230377392	rs6717730	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	230453214	rs11458391	G	GA	2495.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:11,129:0.92:140
chr2	230632268	rs6687	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:67,143:0.68:210
chr2	230633223	rs79555909	A	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr2	230634114	rs10174776	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	230655733	rs722268	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	230663576	rs6720868	C	T	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:79,161:0.67:240
chr2	230666898	rs10432554	A	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	230668968	rs4972915	G	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	230705516	rs11373804	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.629;QD=0.85;ReadPosRankSum=0.587;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:59,17:0.22:76
chr2	230744570	rs479492	C	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	230841074	rs499449	C	T	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr2	230914766	rs6748654	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	230923735	rs73998736	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=9.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.494;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr2	231025410	rs6752144	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	231036564	rs115377952	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr2	231050569	rs2114591	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	231050715	rs3948464	A	G	11523.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr2	231067305	rs7606916	C	G	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:41,126:0.75:167
chr2	231072709	rs1365776	C	T	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	231076032	rs3769837	G	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	231076289	rs3820974	T	G	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	231077154	rs41309096	G	A	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:155,79:0.34:234
chr2	231077725	rs1129411	A	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	231077868	rs7601176	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	231081405	rs7580912	T	C	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	231103185	rs2278197	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	231106244	rs2288328	G	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	231115524	rs72988209	A	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr2	231115639	.	C	T	3120.77	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:99,152:0.61:251
chr2	231118186	rs3769840	G	A	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:68,143:0.68:211
chr2	231120255	rs55829350	CG	C	258.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	231120258	rs201594901	G	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=-0.348;QD=3.20;ReadPosRankSum=-0.079;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr2	231149108	rs4972946	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	231152633	rs11887179	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	231157271	rs7602027	T	C	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,81:0.69:118
chr2	231175763	rs78116662	G	A	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	231176040	rs139570354	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-4.402;QD=1.66;ReadPosRankSum=0.538;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr2	231226218	rs11275282	G	GTCATGTGTAACCC	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.62;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	231226488	rs11891724	C	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	231235761	rs143088893	C	T	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:73,135:0.65:208
chr2	231254919	rs17332171	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	231256811	rs145339453	CA	TG	7271.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;JOINED;set=Intersection	GT:AD:AF:DP	0/1:107,182:0.63:289
chr2	231258218	rs7563909	A	T	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr2	231258309	rs72495174	T	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=1.067;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	231258322	rs72996292	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	231261620	rs6732940	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:51,117:0.70:168
chr2	231266526	rs149348058	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.21;MQRankSum=-1.447;QD=14.07;ReadPosRankSum=-0.535;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	231282234	rs76684240	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr2	231309139	rs55637456	A	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr2	231314093	rs62193406	G	A	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:72,121:0.63:193
chr2	231314373	rs77629037	G	A	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:93,151:0.62:244
chr2	231315069	rs75192874	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	231331694	rs1678159	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	231331701	rs3214547	A	AG	544.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	231331799	rs1649869	T	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr2	231331896	rs1050224	G	A	8107.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	231337960	rs1615190	C	T	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	231359225	rs6759377	T	C	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:93,112:0.55:205
chr2	231363252	rs34979917	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.19;ReadPosRankSum=1.111;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	231375826	rs373409320	G	T	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.360;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:54,41:0.43:95
chr2	231375835	rs190408518	A	C	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=0.609;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:62,45:0.42:107
chr2	231380371	rs139703144	GT	G	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr2	231406680	rs836237	T	C	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	231406761	rs115340060	C	G	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=1.039;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:110,53:0.33:163
chr2	231406846	rs10199013	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	231407519	rs6717269	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	231407584	rs375735306	C	G	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.877;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:47,78:0.62:125
chr2	231407663	rs9288668	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:168,73:0.30:241
chr2	231738168	rs2289235	G	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:90,129:0.59:219
chr2	231738263	rs2289234	C	T	7282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=4.034;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:129,192:0.60:321
chr2	231738269	rs2289233	G	A	7226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=2.538;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:113,183:0.62:296
chr2	231738318	rs3816150	T	C	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,105:0.64:164
chr2	231740276	rs2289231	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	231741711	rs7570262	A	G	5476.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:116,248:0.68:364
chr2	231742711	rs60237566	T	G	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr2	231774844	rs2396777	G	A	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:96,155:0.62:251
chr2	231775297	rs1992186	T	G	7617.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	231775371	rs80290067	C	T	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.756;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:309,139:0.31:448
chr2	231860838	rs2271369	C	T	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	231860848	rs6722863	A	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.40;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	231860896	rs147418354	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr2	231860927	rs61741617	G	A	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr2	231867220	rs10933364	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	231902316	rs186173488	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	231940362	rs60087901	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	231943370	rs141191699	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:234,106:0.31:340
chr2	231944373	rs2303353	A	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	231949946	rs2303357	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr2	231973363	rs61731723	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.565;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:116,51:0.31:167
chr2	231974177	rs142505353	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	231988083	rs201933699	CAT	C	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,16:0.22:74
chr2	231988610	.	T	TA	25	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.4999;HP=11;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=0;NR=3;PP=25;QD=11.3333333333;SC=CACCTTCCTTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=3;WE=231988618;WS=231988600;set=Platypus	GT:AD:AF:DP	1/0:6,3:0.33:9
chr2	232025963	rs200343981	AAAAG	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.283;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	232029738	.	TTATATATATTTATATATATATATATATATATATATATATA	T	259.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	232030510	rs2303351	C	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	232030555	rs2303350	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	232030861	rs2303349	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	232035429	rs6749	G	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	232070747	rs149223447	T	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-1.133;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	232072796	rs112353881	ATTTG	A	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.605;QD=16.88;ReadPosRankSum=-1.063;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	232072912	rs11558174	T	C	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:81,116:0.59:197
chr2	232073106	rs12465438	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	232087474	rs1626450	AT	GA	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	232104566	rs16827884	G	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr2	232121159	.	T	TA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.017;QD=3.66;ReadPosRankSum=0.588;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr2	232143110	rs150092118	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,32:0.29:109
chr2	232196464	rs57088088	T	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr2	232209881	rs145038049	A	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	232209966	.	C	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=2;MGOF=209;MMLQ=28;MQ=55.55;NF=0;NR=2;PP=31;QD=32.8856062736;SC=TTGAGTCCTTCTCCCTTCCCC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=232209974;WS=232209956;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	232220438	rs146923052	TGCAGTCG	T	1150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.342;QD=8.65;ReadPosRankSum=-0.946;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:97,36:0.27:133
chr2	232225535	rs35889244	C	CG	10514.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	232225718	rs73098110	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	232227392	rs59199732	T	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.056;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	232235622	rs114867712	G	A	157.82	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	232235950	rs16828017	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	232236277	rs142016082	CG	C	1212.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr2	232245649	rs73098147	G	A	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.789;QD=6.50;ReadPosRankSum=1.281;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:186,116:0.38:302
chr2	232260537	rs4972989	T	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=24.73;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	232263127	rs2290130	G	A	8087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.750;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:222,391:0.64:613
chr2	232317402	rs11295750	CA	C	2524.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:198,96:0.33:294
chr2	232317438	rs77999375	C	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:196,102:0.34:298
chr2	232321956	rs7598759	C	T	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	232323875	rs73996752	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr2	232323901	rs115976293	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr2	232325039	rs56310279	G	C	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:105,168:0.62:273
chr2	232326417	rs1131171	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	232326801	rs2595514	A	T	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	232378231	rs6750795	T	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr2	232389744	rs3752762	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:54,93:0.63:147
chr2	232390151	rs3752763	A	G	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr2	232458443	rs10933378	T	C	11648.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr2	232601768	rs10192111	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	232656436	rs115875756	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr2	232673378	rs60365791	A	AT	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-1.500;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	232790053	rs5268	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	232879671	rs723044	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.342;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:45,57:0.56:102
chr2	232888856	rs896990	T	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	232952143	rs35104431	CT	C	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=1.093;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr2	233199107	rs75782436	C	T	5131.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:192,242:0.56:434
chr2	233201328	rs3811578	A	G	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	233201443	rs113002914	A	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr2	233205469	rs183840042	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr2	233243660	rs2014448	T	C	12789.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;QD=38.06;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr2	233243660	.	TTTTGCTC	CTTTGCTC,CTTTGCTT	2221	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=3;MMLQ=27;MQ=55.03;NF=83,59;NR=89,61;PP=496,2221;QD=3.08587914272;SC=CTGACCTGATTTTTGCTCTCC;SbPval=0.54;Source=Platypus;TC=174;TCF=84;TCR=90;TR=172,120;WE=233243675;WS=233243650;set=Platypus	GT:AF:DP	0/1:0.99:174
chr2	233243667	rs377638686	C	T	5031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-2.003;QD=14.80;ReadPosRankSum=-1.311;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:111,229:0.67:340
chr2	233243981	rs13026692	A	T	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:281,195:0.41:476
chr2	233244586	rs2853374	C	G	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	233244930	rs1048988	G	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.494;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=15.061;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-13.385;QD=1.25;ReadPosRankSum=-2.086;SOR=2.338;set=HC	GT:AD:AF:DP	0/1:397,42:0.10:439
chr2	233244937	rs1048989	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.416;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=9.614;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-11.562;QD=1.38;ReadPosRankSum=-1.728;SOR=1.812;set=HC	GT:AD:AF:DP	0/1:416,50:0.11:466
chr2	233245090	rs2260307	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:99,93:0.48:192
chr2	233245141	rs2260309	T	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	233245210	rs13034594	C	T	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:508,278:0.35:786
chr2	233271697	rs369374441	TAC	T	6223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-1.960;QD=17.10;ReadPosRankSum=1.716;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:130,234:0.64:364
chr2	233272162	rs2678517	G	A	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:94,146:0.61:240
chr2	233272925	rs2678518	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr2	233273107	rs1130346	A	G	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.055;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-10.821;QD=3.61;ReadPosRankSum=-6.042;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:104,36:0.26:140
chr2	233273504	rs183793479	T	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.02;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	233274145	rs2090543	G	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	233274169	rs2091555	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr2	233310297	rs796887	T	C	629.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.09;MQRankSum=-2.361;QD=22.49;ReadPosRankSum=-1.213;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr2	233310369	rs790045	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.81;QD=24.83;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	233310423	rs814220	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.52;QD=23.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	233320885	rs3762519	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr2	233321641	rs61732032	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:230,124:0.35:354
chr2	233321836	rs2272422	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:223,116:0.34:339
chr2	233322424	rs2246004	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:124,72:0.37:196
chr2	233322958	rs41265121	T	C	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:282,130:0.32:412
chr2	233323000	rs10195208	C	T	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:112,202:0.64:314
chr2	233323177	rs2003780	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr2	233323205	rs2741269	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr2	233344991	rs2741279	T	G	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	233346074	rs10201913	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	233346662	rs909432	A	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	233349588	rs1529874	G	A	12164.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr2	233385396	rs1550094	G	A	4131.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:110,198:0.64:308
chr2	233386229	rs2853444	T	C	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	233386583	rs2853445	T	C	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	233387379	rs115599535	T	C	5242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.027;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:543,291:0.35:834
chr2	233387599	rs149313346	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:111,62:0.36:173
chr2	233387635	rs733603	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	233388813	rs2741299	T	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr2	233389167	rs58091792	G	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	233389918	rs2853447	A	G	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	233390937	rs2245601	A	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:128,86:0.40:214
chr2	233392010	.	T	TG	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.510;QD=5.80;ReadPosRankSum=-1.855;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	233392020	.	A	AAAG	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.453;QD=5.36;ReadPosRankSum=-1.074;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr2	233395974	.	GGGACCCTCTAGGACCGGTGCCCCAAGGTCACAGCT	G	1978.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr2	233400074	rs2767	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr2	233404294	rs11674608	C	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.100;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr2	233404590	rs12996322	G	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,13:0.20:65
chr2	233405307	rs16829198	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr2	233407701	rs17838626	G	T	6126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=967;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.759;QD=6.36;ReadPosRankSum=0.114;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:612,351:0.36:963
chr2	233408220	rs10714586	AG	A	6126.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	233408239	rs2573206	C	G	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	233415978	rs11899983	T	C	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:95,179:0.65:274
chr2	233416068	rs12617942	C	T	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:93,161:0.63:254
chr2	233421284	rs3830645	CT	C	2839.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:39,116:0.75:155
chr2	233429144	rs10603391	GTATTT	G,GTATTTTATTT	1999.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=109;set=Intersection	GT:AF:DP	1/2:0.67,0.33:49
chr2	233431704	rs150117019	T	C	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=2.741;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:174,79:0.31:253
chr2	233470843	rs7571133	G	A	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	233498669	rs2276557	G	T	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:67,125:0.65:192
chr2	233503041	rs73105455	G	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:115,45:0.28:160
chr2	233599904	rs11555646	A	C	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:93,68:0.42:161
chr2	233620907	rs35554391	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=2.363;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	233626167	rs141770509	CAT	C	2526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.844;QD=22.76;ReadPosRankSum=1.694;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,66:0.59:111
chr2	233633460	rs1801251	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:63,16:0.20:79
chr2	233641083	rs737027	G	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,64:0.35:183
chr2	233681512	rs1078323	T	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	233708806	rs3816334	A	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:89,168:0.65:257
chr2	233710713	rs4973054	G	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	233712049	rs2305137	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.071;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr2	233712226	rs10555297	CACA	C	2472.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr2	233721455	rs1947105	G	A	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:76,93:0.55:169
chr2	233723182	rs1284	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr2	233740227	rs778338	A	G	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:53,122:0.70:175
chr2	233744130	rs58821056	GCC	G	848.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.95;ReadPosRankSum=-0.085;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	233744133	.	C	G	857.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=8.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.99;ReadPosRankSum=0.359;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr2	233752639	rs2250665	A	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.80;ReadPosRankSum=-1.550;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	233752932	.	GCA	G	819.73	.	AC=1;AF=0.500;AN=2;DP=191;set=Intersection	GT:AD:AF:DP	0/1:114,53:0.32:167
chr2	233757679	rs748002	G	A	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:152,213:0.58:365
chr2	233757697	rs895432	A	G	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	233759695	rs938569	G	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:78,117:0.60:195
chr2	233785015	rs778354	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr2	233834902	rs56988700	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	233834975	rs4973588	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	233880271	rs60652209	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	233880508	rs62193981	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:127,56:0.31:183
chr2	233899377	rs2233394	C	T	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:228,111:0.33:339
chr2	233925166	rs1141328	G	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr2	233925406	rs34218488	T	G	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr2	233925491	rs4246649	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	233998646	rs6738961	C	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	234054237	rs140053128	T	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr2	234054515	rs147786898	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr2	234054989	rs36180605	T	G	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,378:1.00:379
chr2	234055004	rs36189208	T	C	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,306:1.00:307
chr2	234056091	rs149513640	C	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr2	234066969	rs36127492	C	G	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	234067089	rs36165346	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr2	234072626	rs141642539	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	234079551	.	CAA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.05;ReadPosRankSum=0.710;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	234091158	rs4571051	T	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	234093035	rs6740918	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	234094360	rs66867406	TA	T	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=15.486;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.148;QD=6.30;ReadPosRankSum=-0.669;SOR=2.350;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	234107070	rs7569827	G	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	234112649	rs7609436	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	234115359	rs75739398	C	T	19998.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:4,765:0.99:769
chr2	234160345	rs2289477	T	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.009;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr2	234160669	rs10199278	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	234173503	rs12994997	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	234178624	rs35705047	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.483;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr2	234181593	rs2289475	G	C	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:216,124:0.36:340
chr2	234182240	rs2289472	C	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.547;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:65,43:0.40:108
chr2	234183368	rs2241880	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:152,93:0.38:245
chr2	234183468	rs2241879	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	234184417	rs3792109	G	A	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:245,170:0.41:415
chr2	234184464	rs114349660	G	C	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:213,140:0.40:353
chr2	234197717	rs4663136	C	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	234227523	rs2304777	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:172,118:0.41:290
chr2	234235820	rs2304773	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:158,49:0.24:207
chr2	234238254	rs745498	T	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr2	234263198	.	C	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.817;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:41,37:0.47:78
chr2	234294561	rs3075537	T	TTC	11240.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	234294726	rs189582720	G	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr2	234294791	rs838716	G	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	234343390	rs116803002	T	C	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:457,232:0.34:689
chr2	234347091	rs3214826	TA	T	295.74	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	234354245	rs2305542	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	234368821	rs2290464	T	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	234371153	rs138907532	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:96,75:0.44:171
chr2	234372767	rs2924811	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.048;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:187,71:0.28:258
chr2	234372985	rs2242098	A	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	234386018	rs2971862	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr2	234386134	rs2971863	A	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:131,53:0.29:184
chr2	234386271	rs139505508	C	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	234389716	.	C	T	366.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	234394329	rs1470864	C	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:218,123:0.36:341
chr2	234394487	rs1048603	G	A	9448.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	234394568	rs61736676	CA	TG	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;JOINED;set=Intersection	GT:AD:AF:DP	0/1:83,57:0.41:140
chr2	234397944	rs151264366	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	234398195	rs112451786	G	GA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.029;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr2	234405374	rs2602386	A	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	234408547	rs78122518	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-2.240;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr2	234418873	rs116963421	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	234420361	rs72982319	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:173,99:0.36:272
chr2	234420439	rs373209416	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:82,113:0.58:195
chr2	234432017	rs838543	A	G	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:235,151:0.39:386
chr2	234433124	rs838549	G	A	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.544;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:374,190:0.34:564
chr2	234438246	rs56828432	C	CT	2757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.919;QD=22.42;ReadPosRankSum=-2.250;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:35,88:0.72:123
chr2	234438354	rs12692193	C	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	234442437	rs11332355	CA	C	208.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,11:0.85:13
chr2	234449316	rs2167884	G	A	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:112,129:0.54:241
chr2	234449462	rs1545525	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	234450822	rs1901812	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	234457632	rs73123133	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=0.241;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	234460046	rs151152774	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr2	234465572	rs79471829	A	T	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=3.445;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:162,76:0.32:238
chr2	234465618	rs146417018	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:223,95:0.30:318
chr2	234465770	rs78075797	T	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr2	234468327	rs139962694	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	234469751	rs200139615	T	TA	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr2	234469794	rs191286236	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.017;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr2	234474222	rs112086362	T	TA	1011.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr2	234526223	rs11415286	A	AT	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.443;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	234526510	rs45504099	C	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:89,64:0.42:153
chr2	234545039	rs149250772	A	AT	209.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-0.319;QD=17.48;ReadPosRankSum=-0.887;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	234580453	rs3832043	AT	A	975.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	234590970	rs17868323	T	G	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=43.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	234590974	rs17863778	CG	AA	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=46.38;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	234598991	rs7563561	T	G	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	234599089	rs7608175	C	G	13885.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr2	234599296	rs45615240	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	234601669	rs6759892	T	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	234601965	rs1105880	A	G	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	234602202	rs1105879	A	C	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:87,204:0.70:291
chr2	234602277	rs17863783	G	T	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:4,292:0.99:296
chr2	234626287	rs869283	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	234627937	rs2011404	T	C	9564.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr2	234637803	rs3821242	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	234637853	rs6706232	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	234637912	rs6431625	T	C	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	234638249	rs7574296	A	G	10604.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,416:1.00:418
chr2	234638580	rs45449995	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr2	234652308	rs34622615	G	T	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:124,227:0.65:351
chr2	234652642	rs76063448	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr2	234663649	rs10929301	C	G	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:236,158:0.40:394
chr2	234668879	rs34983651	C	CAT	121.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	234676413	rs2302538	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr2	234676458	rs12471326	T	C	4665.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:100,209:0.68:309
chr2	234687963	rs17868344	A	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=0.690;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	234688036	rs6431631	C	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr2	234698016	rs17862886	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	234698097	rs12468017	T	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr2	234698126	rs17862888	C	G	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,105:0.62:169
chr2	234702459	rs1500481	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:105,53:0.34:158
chr2	234702520	rs17868350	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr2	234702905	rs10169532	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.039;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr2	234703136	rs6431634	T	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.468;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:153,53:0.26:206
chr2	234704150	rs2885297	T	C	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	234704318	rs2361503	A	G	5019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=1097;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.174;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:777,318:0.29:1095
chr2	234704495	rs11563248	T	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:190,81:0.30:271
chr2	234704686	rs148598250	C	A	3693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.754;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:101,168:0.62:269
chr2	234704690	rs759173	T	C	9794.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	234704746	rs759172	G	C	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	234707341	rs1500479	T	C	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	234708428	rs13013882	G	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	234708570	rs11563069	G	A	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	234708629	rs13018934	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	234708720	rs2041652	T	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr2	234708824	rs55686299	T	G	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr2	234708868	rs11563246	G	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,58:0.33:175
chr2	234709000	rs11563245	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	234710831	rs10929306	G	C	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	234711008	rs741158	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	234712652	rs11562982	C	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	234713571	rs11563242	C	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	234713706	rs4430949	T	C	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	234713812	rs2041651	G	T	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	234716309	rs6716876	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	234716426	rs11563241	G	A	6258.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	234717669	rs10803663	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	234720730	rs17862895	T	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-1.807;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr2	234720734	rs988344	A	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	234725502	rs726016	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr2	234726616	rs6756004	A	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr2	234726725	rs11563236	C	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:365,146:0.29:511
chr2	234728078	rs1500480	T	C	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:72,130:0.64:202
chr2	234730807	rs6734083	G	A	6535.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:159,309:0.66:468
chr2	234731140	rs28900690	G	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:341,173:0.34:514
chr2	234732092	rs28900691	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.312;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	234732317	rs11676792	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	234737372	rs7564261	C	A	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr2	234738175	rs502059	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	234738472	rs582432	G	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	234740136	rs879665	G	A	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:248,315:0.56:563
chr2	234740157	rs879664	G	A	7005.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:256,339:0.57:595
chr2	234740310	rs879666	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	234740758	rs213547	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	234740797	rs76276350	C	CAAAA	2661.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	234740798	rs3064782	T	A	2670.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	234740985	rs474242	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	234740985	.	GGC	AGG	2738	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=4;HapScore=1;MGOF=36;MMLQ=27;MQ=60.0;NF=30;NR=39;PP=2738;QD=20;SC=AGTCCACCCCGGCACTCGGGG;SbPval=0.61;Source=Platypus;TC=71;TCF=32;TCR=39;TR=69;WE=234740995;WS=234740975;set=Platypus	GT:AD:AF:DP	1/1:2,69:0.97:71
chr2	234740987	rs658482	C	G	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	234741022	rs122856	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	234741028	rs5839496	A	AG	2927.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	234749151	rs213555	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	234749258	rs10511	T	C	6620.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:163,317:0.66:480
chr2	234749354	rs12582	G	A	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:95,200:0.68:295
chr2	234749780	rs3821238	G	C	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:93,124:0.57:217
chr2	234750542	rs3732215	G	C	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:94,160:0.63:254
chr2	234750831	rs3806589	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	234752638	rs7583713	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	234753008	rs169925	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	234754273	rs2302156	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	234754506	rs2302155	G	A	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:77,133:0.63:210
chr2	234756240	rs2286431	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:31,83:0.73:114
chr2	234761225	rs2286430	C	T	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:117,167:0.59:284
chr2	234761355	rs554699	G	A	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-0.139;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:85,104:0.55:189
chr2	234762480	rs626110	A	T	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:117,203:0.63:320
chr2	234763226	rs503913	C	T	5391.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:169,260:0.61:429
chr2	234839404	rs4663987	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.618;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:150,52:0.26:202
chr2	234846198	rs1019103	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	234856355	rs28901645	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:228,121:0.35:349
chr2	234863698	rs10519360	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:93,49:0.35:142
chr2	234863788	rs7593557	G	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:145,77:0.35:222
chr2	234863932	rs28902168	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr2	234873123	.	G	A	66	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=57;MMLQ=24;MQ=54.66;NF=6;NR=0;PP=66;QD=16.7952020912;SC=TTGAACCCGGGAGGTGGAGGT;SbPval=1.0;Source=Platypus;TC=15;TCF=11;TCR=4;TR=6;WE=234873131;WS=234873113;set=Platypus	GT:AD:AF:DP	1/0:9,6:0.40:15
chr2	234873231	rs201509989	A	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr2	234888643	rs6745987	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	234888721	rs6736916	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,64:0.67:96
chr2	234890391	rs6708995	G	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	234890432	rs28902201	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	234892127	rs4663995	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-1.718;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	234916771	rs11450151	A	AT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.485;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr2	234916794	rs28902233	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr2	234916831	rs6734618	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.89;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	234916831	.	ATAA	GTAA,GTAG	311	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=27;MQ=60.33;NF=10,2;NR=19,5;PP=311,19;QD=11.9231452602;SC=AGTAGTTGTGATAATAAAAGA;SbPval=0.57;Source=Platypus;TC=29;TCF=10;TCR=19;TR=29,7;WE=234916842;WS=234916821;set=Platypus	GT:AF:DP	0/1:1.00:29
chr2	234916834	rs28902234	A	G	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.441;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	234923124	rs3732214	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-2.541;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr2	234926008	rs28902237	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-1.491;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:178,71:0.29:249
chr2	234967539	rs593668	T	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:106,48:0.31:154
chr2	235943777	rs75754240	G	T	2020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.267;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:307,134:0.30:441
chr2	235949877	rs3731644	T	C	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,268:1.00:269
chr2	235949920	rs3731645	A	G	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr2	235950002	rs3731646	G	A	6418.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:202,301:0.60:503
chr2	235950187	rs1469375	T	C	19927.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,773:1.00:773
chr2	235950284	rs3731648	A	C	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:173,255:0.60:428
chr2	235950883	rs34177695	G	A	2324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=5.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.134;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:319,140:0.31:459
chr2	235950928	rs35766016	G	C	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-2.066;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:283,121:0.30:404
chr2	235951819	rs3795962	A	G	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	236403607	rs3738998	C	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	236433161	rs62191529	G	A	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	236433331	rs11689907	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	236433390	rs10207027	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	236578649	rs10201486	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	236617737	rs55924916	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:80,34:0.30:114
chr2	236617869	rs8178995	G	A	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	236653519	rs6718848	G	A	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=1.767;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:100,98:0.49:198
chr2	236658967	rs77558625	T	C	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=1.279;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:85,134:0.61:219
chr2	236659110	rs112666282	T	C	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:128,171:0.57:299
chr2	236716006	rs8178996	T	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:62,103:0.62:165
chr2	236817336	.	CTT	C	2197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.203;QD=15.81;ReadPosRankSum=-0.052;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:44,95:0.68:139
chr2	236923361	rs35361765	C	CT	1191.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr2	236957675	rs3738991	G	A	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:90,130:0.59:220
chr2	236957822	rs2034648	G	A	16112.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr2	237029104	rs2278884	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=2.203;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	237032607	rs11895915	T	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	237032703	rs8178994	T	C	15044.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr2	237032837	rs11899677	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr2	237076255	rs79285591	C	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:35,99:0.74:134
chr2	237076711	.	C	G	277.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	237103530	rs59098347	C	T	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:61,94:0.61:155
chr2	237103548	rs10177825	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:60,100:0.62:160
chr2	237105050	rs55818776	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	237123104	rs7588748	G	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	237149941	rs6756597	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr2	237150166	rs2015983	A	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr2	237185861	rs10191321	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.749;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	237300677	rs10204742	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:127,70:0.36:197
chr2	237396748	rs61754936	A	C	4775.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:129,235:0.65:364
chr2	237396935	rs6751722	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	237402565	rs3761713	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	237405689	rs6709076	G	A	529.41	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	237405766	rs72115270	CAAA	C	2720.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr2	237412399	rs4427967	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	237415769	rs75774242	G	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.132;QD=20.16;ReadPosRankSum=0.308;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	237415787	rs111592506	T	TGAGAG	1128.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	237416058	rs76804064	G	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr2	237489904	rs1045879	C	T	10225.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	237995981	rs6727123	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	237996106	rs6740125	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-1.301;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	238005369	rs185512092	C	T	608.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr2	238005370	rs11333953	GT	G	599.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	238005515	rs11903547	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	238166147	rs4377288	G	A	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	238233483	rs13032404	G	A	3601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.232;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:91,169:0.65:260
chr2	238243292	rs1131296	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	238243464	rs2270669	C	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	238244963	rs6728818	A	G	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	238249630	rs4433949	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:210,130:0.38:340
chr2	238258814	rs3790993	C	G	13999.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr2	238259675	rs3790995	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr2	238261112	rs4663726	GC	AA	9533.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	238266146	rs2645777	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.31;ReadPosRankSum=-0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	238267058	rs4663731	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	238267717	rs2646254	C	T	7944.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	238269871	rs2645769	C	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr2	238271786	rs11287247	GC	G	341.50	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr2	238272965	rs73093737	C	G	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:39,102:0.72:141
chr2	238277795	rs2646260	A	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:56,96:0.63:152
chr2	238303906	rs2645778	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	238305211	rs1553032	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	238330494	rs11883443	A	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr2	238419543	rs71887544	CGT	C,CGTGTGT	1756.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/2:0.49,0.49:53
chr2	238419611	rs2292879	A	G	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:75,138:0.65:213
chr2	238428418	rs3751106	G	A	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr2	238443226	rs2292884	A	G	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.009;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:58,76:0.57:134
chr2	238443407	rs2292885	G	C	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-0.154;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:23,47:0.67:70
chr2	238443417	rs74001396	G	A	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.12;ReadPosRankSum=-0.853;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	238443509	rs12471827	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	238449007	rs3817362	T	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	238449023	rs3817363	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.445;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:77,18:0.19:95
chr2	238449107	rs2271809	A	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	238449505	rs58256353	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:57,79:0.58:136
chr2	238451126	rs78932235	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:136,75:0.36:211
chr2	238454154	rs867306	C	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=1.148;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr2	238455100	rs73999105	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:56,76:0.58:132
chr2	238460837	rs73999119	A	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	238461773	rs60687800	G	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr2	238461855	rs67525826	C	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	238462324	rs8260	A	G	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:58,89:0.61:147
chr2	238483164	rs6766	T	C	14492.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr2	238483475	rs2280288	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	238483671	rs59945834	G	A	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:117,160:0.58:277
chr2	238483729	rs2280289	A	G	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:128,160:0.56:288
chr2	238483751	rs34311889	T	C	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,137:0.54:254
chr2	238484222	rs10202062	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	238485425	rs73085772	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:107,55:0.34:162
chr2	238485846	rs60038364	G	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	238494161	rs13414922	C	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	238494742	rs3751112	A	G	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	238499863	rs146534321	A	AAATTCTTCAGGAGACTCT	1429.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	238499866	rs114742872	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	238499997	rs6745883	TA	CG	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	238500046	rs6742960	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	238500642	rs10084167	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	238503463	rs77389661	A	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.348;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	238503473	rs113893386	C	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.252;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr2	238503482	rs113264470	C	T	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.719;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr2	238503502	rs76002448	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=2.243;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chr2	238503559	rs2325806	C	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	238503559	.	CTC	GTA,GTC	590	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=24;MQ=60.0;NF=9,28;NR=6,26;PP=85,590;QD=9.23119165748;SC=TTGTTAGTGCCTCTCCGTATC;SbPval=0.79;Source=Platypus;TC=54;TCF=28;TCR=26;TR=15,54;WE=238503569;WS=238503549;set=Platypus	GT:AF:DP	0/1:0.28:54
chr2	238503561	rs75477617	C	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.506;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:84,34:0.29:118
chr2	238632159	rs139854949	GT	G	2939.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:18,157:0.90:175
chr2	238632377	rs3769085	A	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr2	238641002	rs6720481	G	C	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:84,150:0.64:234
chr2	238641249	rs6720803	G	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	238667501	rs3215064	G	GA	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.869;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	238683166	rs2279644	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr2	238688244	rs1151798	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	238896494	.	C	CAT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.39;ReadPosRankSum=1.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	238903310	rs10203101	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr2	238939321	rs140917222	TC	T	5186.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:125,173:0.58:298
chr2	238969964	rs2250185	T	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.376;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:200,77:0.28:277
chr2	238970115	rs13385539	G	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr2	238970128	rs13424865	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	238972827	rs821480	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	238973062	rs7597367	A	G	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-1.099;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:76,88:0.54:164
chr2	238991796	rs2278742	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:257,123:0.32:380
chr2	238999883	rs1128552	T	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr2	239000091	rs17069	T	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	239003260	rs41270749	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	239005586	rs13033964	G	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr2	239006879	rs12993309	C	T	6024.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.257;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.889;SOR=0.417;set=HC	GT:AD:AF:DP	1/1:1,234:1.00:235
chr2	239007755	rs68159827	CATT	C	1427.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr2	239007806	rs1054640	A	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	239007850	rs1054641	T	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr2	239007991	rs15787	T	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.015;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:36,39:0.52:75
chr2	239008936	rs6431579	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.281;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr2	239010719	rs36066915	T	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.511;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:81,57:0.41:138
chr2	239010796	rs10186290	G	C,T	1136.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/2:0.36,0.64:47
chr2	239016539	rs935415	C	G	12629.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr2	239025523	rs11903074	T	C	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	239025630	rs11904159	T	C	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:108,178:0.62:286
chr2	239025645	rs11897736	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:83,126:0.60:209
chr2	239033901	rs10172440	T	C	29600.77	.	AC=2;AF=1.00;AN=2;DB;DP=1132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,1132:1.00:1132
chr2	239033974	rs73100390	C	T	11395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.388;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:337,543:0.62:880
chr2	239034043	rs10170048	A	C	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	239036416	rs12692214	T	C	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:221,123:0.36:344
chr2	239038733	rs73999821	G	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr2	239038912	rs57813708	T	C	3575.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:127,176:0.58:303
chr2	239039057	rs13033248	A	G	4790.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:64,133:0.68:197
chr2	239039075	rs13006204	G	T	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:64,122:0.66:186
chr2	239039637	rs4663845	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	239039841	rs10172220	A	G	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:156,206:0.57:362
chr2	239039896	rs10182906	G	C	15163.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr2	239040187	rs12692215	T	C	9922.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	239040218	rs73102309	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:186,121:0.39:307
chr2	239049540	rs2241985	G	A	15693.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr2	239050033	rs12692216	C	T	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	239051550	rs935411	T	C	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	239053436	rs12623661	G	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	239054504	rs11674140	G	T	10059.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:1,391:1.00:392
chr2	239056505	rs74571983	G	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:83,120:0.59:203
chr2	239056746	rs11674655	T	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	239059484	rs7605194	T	C	7034.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	239075935	rs3820817	A	G	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:97,194:0.67:291
chr2	239079276	rs34150107	G	A	6121.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:108,284:0.72:392
chr2	239079791	rs7577745	T	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=0.765;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	239082166	rs3832064	G	GC	5662.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	239090639	.	AG	A	88.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	239093788	rs6431588	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	239096999	rs60823094	A	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr2	239136376	rs115627296	G	A	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:61,112:0.65:173
chr2	239139821	rs58078533	C	G	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:133,223:0.63:356
chr2	239148575	rs11697	C	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr2	239148970	rs56294817	C	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr2	239148996	rs140615710	CCCGT	C	5279.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:87,133:0.60:220
chr2	239162198	rs34409863	C	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr2	239168425	rs57709759	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr2	239176627	rs73088929	T	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,67:0.62:108
chr2	239176652	rs73088932	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:61,101:0.62:162
chr2	239181904	rs2304674	A	G	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:34,71:0.68:105
chr2	239184366	rs73088942	T	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr2	239184604	rs73088943	G	A	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.708;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:23,41:0.64:64
chr2	239229372	rs13398676	C	A	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	239237783	rs34723381	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	239242719	rs5839695	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=-1.427;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	239307245	rs571820	A	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	239344301	rs112486142	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr2	240003870	rs1063639	G	A	9037.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr2	240016824	rs2279274	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	240029736	rs7585225	T	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	240055966	rs35291459	C	T	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	240061229	rs77796714	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr2	240061513	rs58493558	TG	T	2511.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:60,85:0.59:145
chr2	240066417	rs2290087	A	G	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	240066526	rs2290088	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr2	240078587	rs5839723	GAC	G	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.777;QD=6.22;ReadPosRankSum=-1.019;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr2	240083528	rs3791515	G	A	4482.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:504,266:0.35:770
chr2	240083731	rs3828216	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr2	240085403	rs11124182	C	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	240085674	rs13010577	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	240111477	rs531993	A	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	240111507	rs2290091	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr2	240111556	rs6740794	G	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr2	240158529	rs3842554	A	AAGAAAATCAAAGATCCTT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=0.213;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	240323661	rs1709851	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:158,70:0.31:228
chr2	240500170	rs35846411	G	A	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	240500294	rs11683242	A	C	14355.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr2	240500413	rs6543554	A	G	10829.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:2,424:1.00:426
chr2	240504878	rs6719279	C	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	240504931	rs13021357	A	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr2	240684619	rs6543576	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:145,74:0.34:219
chr2	240702216	rs11884577	C	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.037;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr2	240721384	rs2898872	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr2	240721558	rs149282630	G	A	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,101:0.49:206
chr2	240921817	rs77023828	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	240922822	rs958960	C	A	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	240923050	rs1530144	C	T	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	240923146	rs6716293	TC	CT	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	240946766	rs13848	T	C	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	240954005	rs77816205	C	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr2	240954236	.	C	G	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-1.126;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:141,76:0.35:217
chr2	240957336	rs145371423	T	C	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:79,192:0.71:271
chr2	240961728	rs2083411	T	C	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:347,174:0.33:521
chr2	240961852	rs7596788	A	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	240964583	.	C	CCCACCCCG	624.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	240981179	rs6731916	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	240981375	rs6732185	T	A	6586.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:138,316:0.70:454
chr2	240982052	.	C	G	386	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=23;MQ=42.82;NF=13;NR=10;PP=386;QD=18.2944005455;SC=GAGGCATGGACGAAGGGCCGT;SbPval=0.56;Source=Platypus;TC=54;TCF=31;TCR=23;TR=23;WE=240982060;WS=240982042;set=Platypus	GT:AD:AF:DP	0/1:31,23:0.43:54
chr2	240982059	.	CCGTGGGTG	C	2167.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=2.385;QD=21.46;ReadPosRankSum=2.697;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:28,73:0.72:101
chr2	240982068	.	AAGAGGCATGGACGAAGGGCCGTGGGTGAAGAGGCATGGACGAAGGGCC	A	2112.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=1.076;QD=17.90;ReadPosRankSum=2.637;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:45,73:0.62:118
chr2	240982116	.	C	A	626	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=53.3;NF=17;NR=23;PP=626;QD=16.5192803137;SC=GACGAAGGGCCGTGGGTGAAG;SbPval=0.29;Source=Platypus;TC=74;TCF=37;TCR=37;TR=40;WE=240982124;WS=240982106;set=Platypus	GT:AD:AF:DP	1/0:34,40:0.54:74
chr2	240982131	rs79839275	A	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-0.869;QD=5.22;ReadPosRankSum=-0.038;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:91,46:0.34:137
chr2	240982228	rs10439373	C	T	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr2	240984833	rs13389099	C	G	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:58,131:0.69:189
chr2	240985099	rs150098707	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=-0.464;QD=15.84;ReadPosRankSum=-0.463;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	240985462	rs181027586	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr2	240985511	rs10933560	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	241066280	rs4292120	C	T	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,251:0.99:253
chr2	241073170	rs747741	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	241073450	rs3749078	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr2	241073494	rs4853965	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	241075809	rs13406410	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	241078784	rs2279690	A	T	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:154,92:0.37:246
chr2	241079956	rs2291768	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.842;QD=6.98;ReadPosRankSum=-1.622;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	241389884	rs74597721	GCTCT	G	6858.73	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:126,174:0.58:300
chr2	241396774	.	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,70:0.77:91
chr2	241403955	rs3830536	GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGT	G	9138.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.37;QD=44.58;SOR=2.291;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	241404317	rs2229458	C	T	3446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-1.962;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:2,134:0.99:136
chr2	241404499	rs2228327	C	T	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	241405028	rs61737164	C	T	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.375;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:235,117:0.33:352
chr2	241405400	rs10700206	C	CGTG	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	241405454	rs6760745	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	241405528	rs2228331	A	G	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	241439337	rs12994534	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:71,94:0.57:165
chr2	241440020	rs12986801	T	C	6272.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:175,296:0.63:471
chr2	241446952	rs74388234	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr2	241448660	rs59967171	G	GGATA	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr2	241451351	rs35044862	G	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,58:0.42:137
chr2	241452198	rs12695025	T	C	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:113,203:0.64:316
chr2	241452212	rs12695026	T	C	5454.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:134,248:0.65:382
chr2	241459497	rs68104327	G	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,81:0.61:133
chr2	241463595	rs35996697	T	C	7032.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:138,314:0.69:452
chr2	241465361	rs68048482	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr2	241492255	rs4676428	G	T	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	241496567	rs7609147	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr2	241496770	rs62621191	C	A	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:192,247:0.56:439
chr2	241500674	rs4676426	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	241500896	rs1128149	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr2	241500981	.	TTG	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.376;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr2	241512049	rs2975769	C	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr2	241512470	rs2001823	G	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr2	241512670	rs146828613	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:43,102:0.70:145
chr2	241533845	rs2975763	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	241534188	rs70961719	A	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr2	241534881	rs11890782	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr2	241536423	rs142837242	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:111,54:0.33:165
chr2	241538074	rs2975766	A	G	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	241538229	rs2975767	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	241555740	rs73999953	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	241569692	rs3749171	C	T	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr2	241570391	rs2975786	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	241621869	rs74882485	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241622209	rs4081908	T	C	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	241627928	rs1560619	A	G	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	241628128	rs72334094	CCCCT	C	870.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	241631267	rs71428453	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	241631413	rs71428454	T	G	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	241631476	rs4328629	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.81;QD=26.53;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	241631886	rs375751722	C	G	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.70;QD=36.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	241631901	rs372417168	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	241658338	rs77507271	T	C	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.26;ReadPosRankSum=0.145;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr2	241658341	rs80021949	C	T	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=0.224;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr2	241659368	rs6437368	C	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	241661112	rs11886385	A	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:37,77:0.68:114
chr2	241661192	rs11901423	G	A	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:140,242:0.63:382
chr2	241663046	rs73119973	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	241666418	rs2060194	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	241674222	rs3755533	T	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	241680633	rs4414678	G	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	241683312	rs115037937	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr2	241696840	.	ATCCTCC	A,ATCC	7207.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=437;ExcessHet=3.0103;FS=2.785;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=-0.207;QD=36.96;ReadPosRankSum=1.505;SOR=0.250;set=HC	GT:AD:AF:DP	1/2:2,18,175:0.09,0.90:195
chr2	241702561	rs11688298	T	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr2	241708675	rs2288753	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	241713429	rs2288751	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	241713646	rs1063353	A	G	5386.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:175,259:0.60:434
chr2	241722116	.	C	G	138.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	241722445	rs2288750	G	A	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,134:0.61:220
chr2	241722613	rs2288749	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	241723427	rs2288748	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	241726646	rs2288746	A	G	15650.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr2	241728843	rs2288745	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	241737017	rs10167412	C	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,94:0.58:163
chr2	241808237	rs73106672	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=7.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.027;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:124,59:0.32:183
chr2	241808463	rs66494441	A	G	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.448;QD=5.20;ReadPosRankSum=-0.156;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:241,121:0.33:362
chr2	241808491	.	T	TCCCACCCACAGATCACGGAAGAGGGGAGGGGTCACTGCTTCCTCACTCGGGGGGCCTGGGTCTCACCCCTGTA	7692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.934;ClippingRankSum=0.000;DP=400;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-4.274;QD=22.83;ReadPosRankSum=0.145;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:264,73:0.22:337
chr2	241812566	rs12997245	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr2	241815308	rs12464426	A	G	8912.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	241827618	rs6707763	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	241827696	rs4675869	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	241828012	rs6708304	T	C	13398.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	241828034	rs6707568	A	G	12610.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	241830944	rs10171053	G	T	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	241830969	rs10171067	G	A	10746.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	241831005	rs10195453	C	T	10634.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr2	241831264	rs6737320	G	A	24635.77	.	AC=2;AF=1.00;AN=2;DB;DP=931;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,925:1.00:925
chr2	241831296	rs6709469	C	G	22069.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,824:1.00:824
chr2	241831471	rs6709742	CA	TG	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	241834770	rs4293565	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241834944	rs4468809	T	C	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	241835379	rs12105122	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	241835421	rs13426919	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241835432	rs10933514	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241859255	rs4675790	T	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241865156	rs4675847	T	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	241871759	rs74000148	G	A	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:375,213:0.36:588
chr2	241872597	rs4441463	A	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.639;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:126,84:0.40:210
chr2	241873180	rs74000152	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,11:0.19:58
chr2	241873755	rs141564189	C	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	241874509	rs74000153	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,25:0.26:95
chr2	241874559	rs12618707	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	241874893	rs78656795	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	241874916	rs74000155	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	241874968	rs187987650	G	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	241889937	rs4077132	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:86,21:0.20:107
chr2	241898824	rs10169006	A	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:133,45:0.25:178
chr2	241902943	rs77474230	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	241904001	rs11688859	G	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	241904473	rs10432570	G	A	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	241904498	rs10432571	G	C	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	241905591	rs13395609	T	C	9918.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr2	241905779	rs12466789	A	G	6515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=2.239;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.62;ReadPosRankSum=0.216;SOR=0.601;set=HC	GT:AD:AF:DP	1/1:3,285:0.99:288
chr2	241905859	rs143549055	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr2	241928232	rs73107881	T	C	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr2	241929202	rs73107884	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:136,86:0.39:222
chr2	241929228	rs10200024	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr2	241930549	rs11896962	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.141;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr2	241932399	rs61308140	C	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,63:0.58:108
chr2	241974002	rs6736167	C	G	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:166,106:0.39:272
chr2	241974289	rs2074822	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241976577	rs74000322	C	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:131,55:0.30:186
chr2	241979550	rs7571117	T	C	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	241979623	rs115643503	G	T	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:70,134:0.66:204
chr2	241980070	rs146723801	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	241980123	rs2108487	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr2	241988563	rs74000328	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:68,87:0.56:155
chr2	241991029	rs10206324	A	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	241991903	rs28529274	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr2	241991943	rs12386157	G	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	242002828	rs7581709	C	T	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	242003129	rs74000340	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.785;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr2	242003558	rs34771867	T	C	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	242004199	rs2286319	G	C	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	242004219	rs11464431	T	TG	17016.73	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.40;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr2	242004570	rs2286320	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr2	242004633	rs6710220	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:179,115:0.39:294
chr2	242004866	rs2286321	A	G	2551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.450;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:238,143:0.38:381
chr2	242007465	rs5839780	AC	A	1444.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	242009273	rs13000549	G	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	242011151	rs6760731	A	G	18594.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr2	242011330	rs6746124	C	A	5800.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:628,332:0.35:960
chr2	242011531	rs10204115	G	A	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:89,178:0.67:267
chr2	242012729	rs6721345	G	A	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:108,179:0.62:287
chr2	242021000	.	A	ATCAGG	2793	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=3;MGOF=16;MMLQ=27;MQ=60.2;NF=13;NR=17;PP=2793;QD=20;SC=GCCACCCTGCATCAGGTCATC;SbPval=0.56;Source=Platypus;TC=72;TCF=31;TCR=41;TR=30;WE=242021019;WS=242020990;set=Platypus	GT:AD:AF:DP	1/0:42,30:0.42:72
chr2	242021008	rs3085964	A	AGG	1869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.299;QD=11.00;ReadPosRankSum=2.144;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:77,93:0.55:170
chr2	242021011	.	A	G	2786	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=3;MGOF=16;MMLQ=24;MQ=60.16;NF=44;NR=23;PP=2786;QD=20;SC=TCAGGTCATCAAGGAAGGGAC;SbPval=0.59;Source=Platypus;TC=122;TCF=79;TCR=43;TR=67;WE=242021019;WS=242020990;set=Platypus	GT:AD:AF:DP	1/0:55,67:0.55:122
chr2	242021011	rs75860962	A	ATCG	2498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.332;QD=12.37;ReadPosRankSum=2.917;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:81,121:0.60:202
chr2	242021742	rs2108485	G	T	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:143,216:0.60:359
chr2	242026608	rs4035	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	242026649	rs13411556	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr2	242026957	rs56985225	G	GC	656.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr2	242028741	rs1062748	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr2	242028947	rs13421760	T	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr2	242028980	rs11315986	CG	C	869.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	242029737	rs61234509	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:128,78:0.38:206
chr2	242033770	rs2302047	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr2	242035515	rs142629642	CTCA	C	6672.73	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:110,178:0.62:288
chr2	242036769	rs10171090	G	A	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:76,171:0.69:247
chr2	242036797	rs2286323	A	G	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:99,179:0.64:278
chr2	242041728	rs2286324	G	A	5680.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:149,272:0.65:421
chr2	242046737	rs2240540	T	C	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:78,101:0.56:179
chr2	242046785	rs1131293	A	C	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:101,149:0.60:250
chr2	242047750	rs6708265	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr2	242051777	rs2074824	G	A	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.170;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:54,69:0.56:123
chr2	242054403	rs3815305	G	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr2	242062130	rs2302049	C	G	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=1.453;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:153,110:0.42:263
chr2	242062162	rs2302050	C	T	6585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.186;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.826;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:194,310:0.62:504
chr2	242063350	rs13385610	T	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr2	242065601	rs75080735	C	T	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr2	242065635	rs77674262	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:103,123:0.54:226
chr2	242065798	rs13427684	T	C	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:93,183:0.66:276
chr2	242066314	rs2240542	T	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:236,127:0.35:363
chr2	242077496	rs1470414	C	T	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.428;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:167,86:0.34:253
chr2	242079106	rs188853463	C	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-0.452;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:65,40:0.38:105
chr2	242080062	rs13392516	C	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr2	242082262	rs6709462	T	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.097;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr2	242099961	rs2017989	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	242142737	rs1179530	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	242150065	rs180874103	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr2	242150091	rs58527121	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr2	242151585	rs7593101	C	T	17047.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:2,658:1.00:660
chr2	242151748	rs7566006	G	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	242157228	rs78605785	G	T	5291.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:138,251:0.65:389
chr2	242157337	.	CGGGGGCGCGCAGGGGCG	C	612.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=6.938;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.355;QD=12.50;ReadPosRankSum=-0.716;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr2	242157353	.	CG	C	689.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-1.029;QD=17.69;ReadPosRankSum=-1.045;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	242157359	.	CG	C	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-1.029;QD=17.71;ReadPosRankSum=-1.581;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	242157573	.	C	CAGCGGGGGCGCGCAGGGGCGG	52.70	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr2	242163359	rs7590653	G	A	6210.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:155,285:0.65:440
chr2	242168976	rs15129	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr2	242173247	rs2230359	G	A	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr2	242176019	rs2305073	T	C	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	242196323	rs57225598	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	242203916	rs11891776	A	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	242206956	rs35334418	C	T	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	242255915	rs13417443	G	A	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:119,162:0.58:281
chr2	242259614	rs6745662	G	A	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-0.481;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr2	242274771	rs10195565	G	A	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,112:0.57:195
chr2	242275551	rs6739848	C	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr2	242283071	rs6750169	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	242289663	rs3217007	C	CATT	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	242344128	rs7600289	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	242350605	rs13408162	T	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	242352768	rs16843643	A	C	5436.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:165,260:0.61:425
chr2	242371241	rs184108114	A	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=0.027;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	242371245	rs148538153	A	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.86;ReadPosRankSum=-0.255;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	242401913	rs188710248	A	G	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:127,185:0.59:312
chr2	242402024	rs10208919	C	T	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:105,176:0.63:281
chr2	242402062	rs4675811	A	T	2011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.367;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:53,91:0.63:144
chr2	242407467	rs55764424	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	242433348	rs2018761	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chr2	242439304	rs13418703	C	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	242542298	rs6437269	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	242556732	rs7580021	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-1.973;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:13,37:0.74:50
chr2	242557019	rs7580246	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=-0.552;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr2	242557028	rs36043566	G	C	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.80;ReadPosRankSum=-0.898;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	242572846	rs3208142	A	G	4470.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:128,213:0.62:341
chr2	242577022	rs4675796	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,52:0.37:142
chr2	242590237	rs4464318	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	242590338	rs35731596	A	G	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr2	242593114	rs4567973	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr2	242594622	rs6712888	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr2	242610773	rs7601000	T	A	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	242611055	rs112575235	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr2	242612909	rs1130906	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.068;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	242643998	rs35512800	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:96,61:0.39:157
chr2	242658779	rs71351113	A	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,57:0.74:77
chr2	242662621	rs7581318	G	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:169,84:0.33:253
chr2	242662761	rs7572153	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	242674803	rs77940364	G	A	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:132,208:0.61:340
chr2	242674959	rs62191977	T	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	242680366	rs4073890	A	G	6007.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-0.430;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:1,231:1.00:232
chr2	242680430	rs4073889	A	G	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:287,192:0.40:479
chr2	242684115	rs4234097	T	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	242684394	rs4675884	G	C	1130.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.968;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=0.939;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr2	242688203	rs34519321	C	T	9864.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	242688292	rs34767042	C	T	12486.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr2	242688366	rs35386923	C	T	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	242688434	rs34077392	T	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr2	242688442	rs35249772	T	TC	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	242688672	rs78280775	C	T	10359.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr2	242688870	rs113047262	T	C	8832.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr2	242690745	rs1105273	C	T	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:111,122:0.52:233
chr2	242694399	rs112802682	C	G	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:223,127:0.36:350
chr2	242695497	rs62192024	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	242707101	rs6756901	A	G	8014.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	242742653	rs78145032	T	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr2	242743087	.	G	C	2959.77	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:60,130:0.68:190
chr2	242750231	rs35392728	T	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.645;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr2	242750303	rs149434270	A	G	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr2	242750460	rs34748986	T	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr2	242754891	.	C	CCAAG	687.73	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr2	242755465	rs34241734	C	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	242755599	rs66482163	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	242756677	.	A	G	445	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=116;MMLQ=28;MQ=57.83;NF=19;NR=4;PP=445;QD=20.8596179368;SC=CCCGTCCCAGACAAATCCCTC;SbPval=0.66;Source=Platypus;TC=36;TCF=29;TCR=7;TR=23;WE=242756685;WS=242756667;set=Platypus	GT:AD:AF:DP	0/1:13,23:0.64:36
chr2	242756846	rs114477206	C	G	6770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.608;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:206,348:0.63:554
chr2	242757334	rs3749152	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr2	242758179	rs2293764	C	T	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	242758203	rs2293763	T	C	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr2	242758326	rs2293761	G	A	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	242758475	rs2293759	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	242793273	rs2227981	A	G	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	242793559	rs6705653	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	242794190	rs148607473	T	TG	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.305;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr2	242794537	rs375259991	G	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr2	242811836	rs75146974	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	242812079	rs114690115	GT	CC	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;JOINED;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr2	242813124	rs13016102	T	C	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	242813202	rs28512331	G	A	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.540;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:24,75:0.76:99
chr2	242813205	rs28380696	A	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.96;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	242813241	rs28392509	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	242814027	rs76439282	C	T	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:75,140:0.65:215
chr2	242814283	rs28499542	C	T	3000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-1.074;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:107,144:0.57:251
chr2	242814360	rs28378061	T	C	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:108,205:0.65:313
chr2	242814463	rs28523279	A	T	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	242814604	rs78628254	G	C	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:151,119:0.44:270
chr2	242814705	rs201603032	C	T	3540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-2.880;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:390,206:0.35:596
chr2	242814778	rs7597435	C	T	5341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=1.119;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:580,309:0.35:889
chr2	242839363	rs4973668	G	C	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr2	242839540	.	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr2	242839614	rs13025557	T	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	242841399	rs76839945	T	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr2	242842382	rs78173981	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr3	239347	rs4685394	C	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	239555	rs58240971	C	CT	1117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.544;QD=10.16;ReadPosRankSum=-0.323;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:28,82:0.75:110
chr3	386520	rs1499046	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	391100	rs13060847	A	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	403345	rs9846775	A	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	404771	rs4684390	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	417994	rs930237	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	439963	rs6442827	A	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	440028	rs6771714	T	C	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	440088	rs6771803	T	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	447069	rs11705894	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	1320271	rs3732517	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	1337203	rs565499	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	1339680	rs10558016	GGTTTTT	G	869.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr3	1424850	rs2291100	T	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	2777622	rs1554198	A	G	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	3080527	rs163543	C	T	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	3081750	rs6802588	A	T	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	3081825	rs339285	T	C	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	3170792	rs334773	C	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	3170910	rs334772	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	3171460	rs334769	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	3171502	rs334768	C	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	3171713	rs113671187	G	GCCTGACT	2690.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=43.40;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	3179262	rs334767	A	T	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	3189059	rs1621648	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	3189279	rs1705805	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	3189398	rs1669348	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	3192524	rs4183	A	ATAAC	1420.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	3193957	rs1705800	A	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	3196273	rs11300080	AT	A	146.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	3197871	rs1705789	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	3215954	rs1669321	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	3221430	rs1672753	C	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	3886580	rs4685689	A	G	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	3887876	rs2120609	T	C	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	4403767	rs2819561	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	4403817	rs2633851	TT	AC	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	4403837	rs2633852	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	4404087	rs2819560	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	4461569	rs711667	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	4461698	rs711666	C	T	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	4562667	rs1038639	T	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	4687470	rs5846330	G	GCT	1098.74	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr3	4687548	rs4271897	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	4687577	rs4303850	A	G	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	4693656	rs6442894	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	4693937	rs6442895	G	C	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	4694010	rs6442896	A	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	4712413	rs2306875	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	4725619	rs3215005	CA	C	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	4732670	rs4685801	G	A	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	4738774	rs3749382	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	4738999	.	G	GGTGTGT,GGTGTGTGT	960.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=80;set=Intersection	GT:AF:DP	1/1:0.96:25
chr3	4753712	rs2306881	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	4767262	rs7613447	T	C	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	4773892	rs76907489	A	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	4817057	rs6442905	T	C	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	4856180	rs711631	T	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	4856234	rs901854	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr3	4856993	rs6442911	C	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	4859725	rs9844268	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	4867510	rs1051559	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	4872811	.	T	TCACACACACA,TCACACACA	111	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=28;MMLQ=26;MQ=58.06;NF=1,1;NR=7,7;PP=111,51;QD=14.375;SC=TCTCTCTCTCTCTCTCACACA;SbPval=0.56;Source=Platypus;TC=10;TCF=1;TCR=9;TR=8,8;WE=4872823;WS=4872801;set=Platypus	GT:AF:DP	0/1:0.80:10
chr3	4872813	rs5018278	T	A	485.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;QD=30.36;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:3,13:0.81:16
chr3	4872813	.	TCT	ACA	333	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=4;MGOF=28;MMLQ=23;MQ=58.32;NF=3;NR=8;PP=333;QD=35.1334431693;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.82;Source=Platypus;TC=16;TCF=6;TCR=10;TR=11;WE=4872823;WS=4872801;set=Platypus	GT:AD:AF:DP	1/1:5,11:0.69:16
chr3	4872815	rs5018277	T	A	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=40.76;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	4927281	rs4685841	T	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	4927308	rs6794077	A	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	4940658	rs72170014	CAGAG	C	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;QD=41.03;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	4942432	rs724135	C	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	5024415	rs11398309	A	AT	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	5025514	rs139879256	G	GGT,GGTGT	641.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/2:0.33,0.67:18
chr3	5214034	rs62255884	C	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	5214126	rs2270750	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	5241223	rs377120	C	T	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	5241309	rs410509	C	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	5251805	rs62255914	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	6903601	rs342034	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	7456675	rs712774	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	7494245	rs111752136	TTG	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.18;ReadPosRankSum=-0.930;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	7603194	rs1965222	C	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	7678010	rs7611935	G	A	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	7678090	rs7612048	G	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	7732726	rs5846531	AT	A	202.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	8299404	rs145434533	AGAAGGAAGGAAGGAAGGAAGGAAG	A	1101.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	8543713	rs5846598	G	GT	3203.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=30.51;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	8667850	rs6777615	G	A	12990.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr3	8668027	rs73812730	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	8669361	rs1533001	C	A	12338.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	8669367	rs5846608	TG	T	12052.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	8675778	rs11131140	T	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	8676204	rs3774210	A	G	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr3	8676945	rs3816911	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	8686481	rs9990415	G	T	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	8701357	rs7637978	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	8701430	rs371133	T	C	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	8712799	rs62244201	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	8775661	rs1008642	C	T	10420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-1.871;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,404:1.00:406
chr3	8784046	rs58914034	C	CAAA	1163.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=0.672;QD=24.76;ReadPosRankSum=1.888;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:7,40:0.85:47
chr3	8787220	rs13087941	T	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	8809184	rs237902	G	A	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	8809703	rs2228485	G	A	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	8931984	rs656626	A	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	8940825	rs45479694	A	ACT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	8953866	rs9312029	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	8955240	rs430781	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	8955389	rs373572	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	8977758	rs7610024	A	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	9032159	rs2648330	T	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	9034558	rs511815	C	T	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	9035961	rs115450979	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	9066853	rs421041	T	C	8961.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr3	9069747	rs416685	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	9069873	rs10510396	A	G	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr3	9089254	rs2244864	C	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	9091151	rs610457	C	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	9102112	.	C	CTTT,CTTTTTT	624.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.05;SOR=2.584;set=HC	GT:AD:AF:DP	1/2:0,6,10:0.38,0.62:16
chr3	9102137	rs6775479	G	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	9122948	rs2664089	A	G	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	9123116	rs2669986	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	9166281	rs735253	G	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	9406661	rs2728949	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	9406836	rs1054975	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	9407022	rs2648536	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	9408443	rs2648535	A	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	9422210	rs2596916	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	9425911	rs1129170	G	A	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	9426187	rs147229917	A	AT	1660.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	9489767	rs2258735	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	9495385	rs2648580	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	9506454	rs17050369	T	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	9547950	rs2625890	G	C	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.79;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	9547959	rs2625889	C	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	9691526	rs11706340	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	9730529	.	G	GT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.791;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:187,40:0.18:227
chr3	9743398	rs144534173	TGGAG	T	3555.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	9747830	rs111655829	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	9757101	rs57601357	C	T	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr3	9758664	rs6765151	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	9759922	rs11918935	C	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	9760114	rs76369335	T	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	9768336	rs3868893	C	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	9769008	rs3891072	A	T	8033.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr3	9799113	rs293795	A	G	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	9829226	rs293786	A	C	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	9831112	rs293790	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	9831680	rs293791	G	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	9831740	rs79274829	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	9841989	rs6443266	A	G	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	9852059	rs34761997	C	CGAT	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	9859460	rs3806671	C	T	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	9860623	rs3806668	T	G	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	9867625	rs3732527	C	T	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	9868577	rs12490900	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	9871030	rs2290305	T	G	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	9874670	rs7622954	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	9876301	rs13088594	G	T	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	9885022	rs3846165	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	9885109	rs57223920	C	T	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	9885615	rs2290306	G	C	9388.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	9896351	rs279563	A	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	9919968	rs116397880	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	9932337	rs279558	G	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	9944264	rs186229523	T	A	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	9962816	rs376511	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	9969932	rs57179462	TGG	T	12166.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr3	9970031	rs279549	A	G	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr3	9970442	rs279547	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	9975247	rs183956	C	G	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	9976159	rs279552	A	G	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr3	9979660	rs2302786	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	9982445	.	A	AAGGGAGAGGGAG	320.75	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.57;QD=64.15;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	9984989	rs138442570	TGA	T	5148.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	9985457	rs9878047	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	9985656	rs3774207	C	T	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	9990800	rs59465469	G	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	9991101	rs55847233	C	G	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	9991163	rs55847610	A	G	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	9991388	rs279601	G	C	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	10049352	rs2272119	A	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	10049922	rs9837460	G	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	10070417	rs9833228	G	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	10073824	rs6414438	G	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr3	10076842	rs55973240	CTT	C	2239.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	10080987	rs35173688	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	10081374	rs35749514	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	10082399	rs9813284	T	A	197.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	10083526	rs201603399	CTT	C	910.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	10083545	rs111431131	C	CG	1011.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	10084224	rs9879080	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	10085035	rs803335	G	T	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	10085130	rs9809061	C	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	10085351	rs34684855	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.97;QD=30.04;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10085536	rs34046352	A	G	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	10088200	rs35744325	T	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	10088223	rs200221245	T	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-2.658;QD=1.77;ReadPosRankSum=-2.965;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr3	10088239	rs201770712	G	A	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-3.062;QD=7.39;ReadPosRankSum=-1.478;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr3	10088242	rs199726231	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-2.882;QD=7.94;ReadPosRankSum=-1.886;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr3	10088266	rs72492997	G	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-4.698;QD=4.90;ReadPosRankSum=-0.844;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:64,31:0.33:95
chr3	10088299	rs112887807	C	T	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-3.109;QD=12.78;ReadPosRankSum=0.221;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:76,43:0.36:119
chr3	10088308	rs72492998	T	C	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-3.636;QD=12.80;ReadPosRankSum=-1.335;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:84,58:0.41:142
chr3	10088343	rs73126218	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr3	10088404	.	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr3	10088407	.	AG	A	1047.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=46.85;MQRankSum=-4.052;QD=14.35;ReadPosRankSum=-0.434;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr3	10088409	rs375350046	TAAG	T	1047.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=46.64;MQRankSum=-3.961;QD=14.55;ReadPosRankSum=-0.494;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr3	10088422	rs144167368	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=46.17;MQRankSum=-4.769;QD=16.30;ReadPosRankSum=0.190;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr3	10088443	rs145517746	C	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-3.639;QD=12.56;ReadPosRankSum=-0.965;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr3	10088444	rs142624538	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.38;MQRankSum=-3.314;QD=13.82;ReadPosRankSum=-0.881;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	10089689	rs35782247	T	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr3	10089723	rs12330369	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr3	10089738	rs62245508	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:81,56:0.41:137
chr3	10089749	rs12330599	T	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:85,50:0.37:135
chr3	10089772	rs79830642	CA	GG	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.658;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-3.834;QD=4.89;ReadPosRankSum=0.068;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:80,34:0.30:114
chr3	10089775	rs75389047	A	G	1189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-3.763;QD=10.53;ReadPosRankSum=-0.243;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr3	10089815	rs77169020	A	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-4.802;QD=10.23;ReadPosRankSum=-0.568;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr3	10089818	rs78988497	C	T	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-4.848;QD=10.08;ReadPosRankSum=-0.192;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr3	10089828	rs77263972	G	A	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-5.260;QD=10.08;ReadPosRankSum=1.203;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr3	10089834	rs74351786	A	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-5.025;QD=9.49;ReadPosRankSum=0.765;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr3	10089841	rs74509181	C	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-4.489;QD=9.04;ReadPosRankSum=1.489;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr3	10089852	rs75274508	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr3	10089886	rs73811818	G	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	10091035	rs10222446	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.34;QD=25.96;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	10093990	rs36042034	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr3	10105516	rs142354499	A	C	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.89;MQRankSum=0.407;QD=16.40;ReadPosRankSum=2.338;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:31,87:0.74:118
chr3	10106144	rs3864015	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:81,22:0.21:103
chr3	10106515	rs9809716	T	C	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:68,108:0.61:176
chr3	10106608	.	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-6.238;QD=3.34;ReadPosRankSum=-3.420;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr3	10106623	.	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-6.190;QD=1.29;ReadPosRankSum=-2.524;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr3	10107215	rs34323624	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	10114802	rs9824585	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10115043	rs35594075	C	T	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	10115159	rs35403996	C	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	10116146	rs7625685	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10119603	rs6792951	C	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	10119917	rs6805869	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	10128965	.	C	CTTT	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.39;ReadPosRankSum=-0.070;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr3	10133949	rs9811771	A	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	10136150	rs7610821	C	T	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	10138069	rs2272125	T	G	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	10138189	rs2272124	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr3	10140671	rs7626117	G	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	10140696	rs7647987	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	10144778	rs111889470	TA	T	470.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-1.263;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr3	10146036	rs10510415	C	T	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr3	10157598	rs28532206	C	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	10188428	rs1678607	T	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	10189929	rs1681660	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	10219729	rs1681663	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	10241987	rs263410	A	C	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	10242243	rs263411	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	10264299	rs813591	C	T	6175.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	10268017	rs779905	C	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	10276163	rs708035	T	A	7278.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	10283716	rs796552	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10290832	rs9825131	T	C	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	10290851	rs9825138	T	G	4369.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	10302395	rs439483	G	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	10302479	rs402330	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	10312113	rs61730105	T	C	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	10312534	rs56261813	G	A	7811.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	10318230	rs3217211	A	AT	4415.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	10328250	rs35683	A	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	10342876	rs696221	C	T	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	10346996	rs200033116	T	TA	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	10370486	rs4327369	G	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	10427190	rs725027	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	10452270	rs7627180	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	10976876	rs2245532	A	G	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	11070542	rs11290120	GC	G	2144.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	11070864	rs6770472	G	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	11075503	rs2246543	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	11356740	.	C	CT	33	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=0.9998;HP=8;HapScore=2;MGOF=0;MMLQ=26;MQ=65.19;NF=2;NR=0;PP=33;QD=25.0;SC=TTTAAGGTACCTTTTTTTTGA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=11356748;WS=11356730;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr3	11356987	rs147042117	T	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	11518755	rs4684782	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	11643465	rs2276749	T	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	11667714	rs3856802	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	11685143	rs34152653	T	TA	302.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.559;QD=11.65;ReadPosRankSum=1.593;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr3	11734610	rs141086712	A	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.34;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	11744544	rs11411195	G	GA	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	11880760	rs7641243	T	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	11912797	rs62246062	C	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.95;QD=26.59;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	11924613	rs369394286	AG	A	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.01;QD=28.72;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	11925136	rs423051	T	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	11925489	rs2470561	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	11925545	rs28682978	T	C	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	11925610	rs421090	C	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.48;QD=23.78;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	12045891	rs79624759	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	12045899	rs77368781	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	12045923	rs73135622	A	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	12045986	rs67270413	G	A	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	12046013	rs72624441	A	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	12046076	rs2618395	T	C	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	12046362	rs2923856	G	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	12046364	rs2923857	G	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	12046372	rs2623877	G	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	12046445	rs2600235	TT	GC	285.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	12195674	rs3817004	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	12208652	rs795008	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	12210132	rs11916408	C	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	12210153	rs11924163	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	12232074	rs310764	A	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	12232208	rs310765	T	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	12317739	rs151229409	GAAGGGAGGAAGGA	G	4449.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.86;QD=44.06;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	12447794	rs77911891	A	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	12490546	rs9839872	C	T	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	12537955	rs299651	T	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	12560763	rs1618545	A	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	12570572	rs299632	C	T	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	12573998	rs167257	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	12598839	rs2255655	C	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	12613866	rs2648307	T	C	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	12616533	rs3773341	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	12650482	rs2454440	T	A	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	12650635	rs151300313	CTA	C	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:35,7:0.17:42
chr3	12660291	rs3729926	C	T	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	12779409	rs2271209	A	G	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	12791172	rs937915	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	12810629	rs112818257	CCGGGACTGG	C	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	12810755	rs7641959	G	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	12810837	rs7619736	A	G	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	12838293	rs12631514	G	C	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	12848822	rs11718898	T	C	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	12849011	rs34529773	TA	T	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	12856771	rs367649451	G	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr3	12856856	rs2305398	A	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr3	12858028	rs3732675	T	C	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	12859004	rs3732678	A	C	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	12859435	rs80107853	C	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	12859500	rs6801800	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	12868897	rs149042082	T	TAAG	6765.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr3	12875175	rs143715713	A	AAGCC	2667.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	12941027	rs78758142	G	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	12942850	rs56387830	GC	G	3144.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	12954868	rs2600322	A	G	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	13114533	.	T	TC	7951.73	.	AC=2;AF=1.00;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	13114691	rs74753289	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	13361287	rs354478	C	T	3690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.225;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=1.265;SOR=0.402;set=HC	GT:AD:AF:DP	1/1:1,144:0.99:145
chr3	13361391	rs354479	A	G	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	13368892	rs2271509	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	13379400	rs3773302	C	T	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:3,309:0.99:312
chr3	13383540	rs2271504	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr3	13393166	rs11292029	CT	C	428.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr3	13395579	rs2280084	C	A	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr3	13402008	rs149063456	C	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	13407556	rs3732671	T	C	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	13415146	rs6810356	G	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	13418086	rs6442377	C	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	13420624	rs6442378	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	13421150	rs7628051	C	T	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	13421320	rs7625586	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	13438830	rs13066607	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	13439005	rs7628923	A	G	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	13461798	.	C	CCG	573.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	13523010	rs2655218	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	13649665	rs13327200	C	T	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	13659897	rs4596126	A	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	13663149	rs7630380	C	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	13669537	rs1966825	T	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	13670493	rs61731214	C	A	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	13670536	rs9843344	A	G	7470.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	13670776	rs4684968	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr3	13670837	rs4684969	T	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	13671183	rs877432	T	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	13671514	rs111925991	C	T	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	13672392	rs3773258	G	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	13679688	rs1061390	T	A	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	13679695	rs1061398	C	A	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	13679708	rs12968	C	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	13679829	rs7820	C	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr3	13679850	rs71773469	TTA	T	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	14105552	rs9862102	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	14105882	rs4684179	C	A	5648.73	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:3,227:0.99:230
chr3	14106499	rs2607779	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	14123009	rs78844731	G	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	14154231	rs2731316	T	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	14157890	rs2607747	C	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	14166835	rs2733579	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	14173963	rs4685074	G	T	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	14174146	rs4685075	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	14174427	rs4685076	A	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	14175262	rs2340917	T	C	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	14176446	rs6766740	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	14187449	rs2228001	G	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	14187699	rs2733532	T	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	14187710	rs3731175	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	14188700	rs2733533	C	A	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	14188762	rs2733534	G	C	11660.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr3	14189340	rs2607749	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	14190237	rs2279017	T	G	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	14190268	rs2470353	G	C	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	14193889	rs2227998	C	T	13556.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr3	14197987	rs2958057	A	T	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	14208625	rs3729587	G	C	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	14211865	rs3731081	C	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	14220095	rs2607775	C	G	21975.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,843:1.00:843
chr3	14486392	rs3773189	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	14513682	rs115042746	T	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	14526667	rs138405130	C	CGTGT,CGT	970.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/1:0.96:26
chr3	14535341	rs115041468	G	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	14537867	rs11918344	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	14538072	rs11333211	CA	C	8536.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr3	14561627	rs5846840	A	AG	1140.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	14702982	rs2276754	C	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	14703297	rs9840626	C	T	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	14706745	rs142447115	T	TATTG	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	14708918	rs2280383	A	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	14712473	rs1901	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	14724413	rs9821143	G	A	12857.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr3	14725668	rs12488352	G	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	14745857	rs17040196	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	14755572	rs6765537	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr3	14755617	rs6790129	C	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	14756730	rs9869372	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	14768554	rs17255247	G	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	14813825	rs294624	G	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	14814143	rs74366143	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	14905513	rs172429	T	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	14939198	rs2117775	G	A	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	14939364	rs2117774	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	14939479	rs2164356	G	T	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	14939679	rs2307090	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	14942675	rs293906	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	14949268	rs9818644	C	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	14960170	rs293916	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	14965466	rs4685234	C	T	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	14965507	rs4685235	A	G	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	15127522	rs72400013	CTAG	C	731.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr3	15137645	rs6783581	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	15216541	rs17040821	G	A	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	15216615	rs7639807	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	15216791	rs7651842	T	C	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	15219816	rs7627216	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	15258910	rs6769868	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	15259878	rs17040855	G	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	15270362	rs7637400	G	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	15273519	rs73140130	A	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	15273707	rs7615001	C	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	15274022	rs6442506	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	15276702	rs6791360	T	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	15281941	rs6790505	T	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	15282478	rs7626490	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	15288742	.	C	CTTTT	83	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=14;HapScore=2;MGOF=29;MMLQ=16;MQ=57.63;NF=3;NR=0;PP=83;QD=29.0;SC=GGAAAATTGCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=15288750;WS=15288736;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr3	15289041	rs55678046	C	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	15297464	rs17040910	C	T	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	15297813	rs116552208	A	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr3	15297827	rs17040913	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr3	15298346	rs73144045	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	15298711	rs34094510	TG	T	1906.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	15300701	rs10510435	G	A	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	15301363	rs2291853	G	A	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	15303844	rs3872641	G	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	15455717	rs2290537	A	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	15456550	rs148072600	A	AAAAC	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	15493251	rs111284326	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	15642844	rs41284037	C	T	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:7,258:0.97:265
chr3	15643043	rs2019160	A	G	16015.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr3	15717641	rs78957730	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	15736385	rs2455814	A	T	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	15836723	rs149384714	G	GT	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	15838150	.	G	GT	110.80	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr3	15901053	rs71064238	CT	C	1903.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	15901087	.	C	CCCG	1541.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.53;ReadPosRankSum=-0.275;SOR=0.377;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr3	16305559	rs113442959	A	G	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	16310857	rs842258	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	16358584	rs690241	T	C	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	16364919	rs690216	A	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	16368121	rs690145	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	16457847	rs141053282	GAGCCCCGTTAAGTTTTAAAA	G	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	16535229	rs3815962	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	16635866	rs13067997	C	G	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	16639754	rs3773827	G	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	16646745	rs9847342	C	G	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	16926445	rs138820460	A	AG	254.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	16926491	rs6442654	G	A	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926599	rs7626446	T	G	238.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	16926607	rs7626448	T	C	289.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.20;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	16926642	rs6442655	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.13;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	16926648	rs6442656	T	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	16926666	rs7626542	T	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.54;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	16974610	rs9880307	C	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	16974628	rs9825009	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	17051328	rs7653834	T	C	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	17053499	rs4602367	A	G	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	17077268	rs17272796	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	18308436	rs7432753	A	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	18419553	rs9310557	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	18419859	rs10460976	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	18427924	rs2229261	G	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	19436587	rs10470642	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	19556990	rs56353870	AT	A	94.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	19925807	rs9882578	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	19930003	rs4858714	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	19940877	rs2931385	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	19941074	rs2931386	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	19947105	rs66526230	A	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	19947296	rs2929377	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	19959756	rs2929366	G	A	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr3	19961282	.	T	G	337.77	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	19961330	rs2931403	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	19974700	rs2929350	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	19975139	rs17180771	C	T	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	19975582	rs2929349	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	19992432	rs6773437	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	20011871	rs17796230	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	20017489	rs4858122	G	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	20017490	rs4858121	G	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	20025665	rs34961993	G	GA	197.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.77;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	20025925	.	G	A	25	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9998;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=25;QD=19.9237375157;SC=TTTTAAATGGGGTAAAAATCA;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=20025933;WS=20025915;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	20082354	rs9849842	T	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	20136611	rs2293140	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	20136645	rs2293141	A	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	20136959	rs12636856	A	G	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	20141301	rs11128939	T	G	228.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	20142360	rs4858764	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	20142709	rs79262878	G	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	20143020	rs4858155	G	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	20179033	.	C	CTT	2229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=6.362;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=19.39;ReadPosRankSum=1.908;SOR=2.017;set=HC	GT:AD:AF:DP	0/1:17,98:0.85:115
chr3	20179097	rs6787734	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	20179130	rs142342924	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	20181676	rs3762633	T	C	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	20188074	rs2686314	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	21462787	rs427233	G	A	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	21467245	rs186892	A	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	23364883	rs9844558	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	23986983	rs7644275	C	G	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	23996371	rs4858095	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	24006477	rs4858097	T	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	24169313	rs2278802	A	T	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	24184995	rs3752874	G	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	24270289	rs75964684	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	24562877	rs11714172	G	T	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	25502869	rs2067964	T	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	25611472	rs67669779	GAC	G	175.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.55;ReadPosRankSum=0.126;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr3	25639973	rs11372851	A	AT	1097.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	25775253	rs1488992	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	25775356	rs6550987	A	C	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	25805879	rs11129208	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	25836023	rs9831075	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	25902401	rs4681082	G	C	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	25904394	rs6550999	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	27242887	rs66472045	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	27293650	rs116419765	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr3	27297816	rs3213930	G	C	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	27332177	rs674303	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	27332302	rs674798	G	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	27332674	rs864241	T	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	27343376	rs6551192	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	27353716	rs552647	C	A	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	27363637	rs11393122	T	TA	507.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.819;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr3	27363937	rs640065	T	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	27385616	rs7635958	A	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	27424718	rs1472256	A	G	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	27424799	rs17019721	A	G	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	27427601	rs34916422	TA	T	818.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	27427618	rs13075550	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	27442336	rs3736312	G	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	27446285	rs13063291	T	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	27472936	rs3755652	C	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	27473066	rs13077400	A	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	27490194	rs13096477	T	C	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	27494589	rs2371065	A	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	27759322	rs138948709	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.220;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr3	27759338	rs9866625	C	A	496.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.557;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr3	27763427	rs368178421	G	GCGGCGC	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=42.09;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	28358057	rs11706332	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	28373462	rs139773536	C	CA	3295.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.315;QD=20.73;ReadPosRankSum=-0.150;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:6,153:0.96:159
chr3	28381887	rs3762797	A	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	28520417	rs1563656	T	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	28533458	rs13099814	A	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	28557206	rs10539083	CTG	C	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	28557236	rs7617655	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	29224691	rs116809608	G	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	29476428	rs3773018	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	29804300	rs7340719	C	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	29804487	rs1371839	A	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	29804509	rs1371840	T	C	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	29922333	rs13324314	C	T	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	29925518	rs2218724	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	29977739	rs1449287	T	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	29985582	rs149371891	G	T	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr3	30648248	rs2306856	C	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	30686325	.	TG	CT	9870.77	.	AC=2;AF=1.00;AN=2;DP=223;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	30819831	rs3043043	ACT	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	30827904	rs6550024	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	30842298	.	GACACACACAC	GAC,G	253.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=9;set=Intersection	GT:AF:DP	1/1:1.00:7
chr3	31621228	rs58289734	T	TAAA	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	31638394	rs9867914	G	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	31642037	rs11713598	A	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	31663515	rs10662891	A	AGTGTG	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	31677395	rs11129457	T	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	31712170	rs75528525	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.17;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	31712176	rs3749406	G	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.32;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	31712393	rs3749405	C	T	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr3	31789378	rs7613915	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	31839137	rs74533404	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	31839242	rs7643025	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	31839284	rs11129464	A	G	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr3	31839325	rs11129465	A	T	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	32022333	rs10610936	GCACACACA	GCACA,G	1041.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/1:0.94:31
chr3	32030544	rs11129475	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	32030998	rs4639011	C	T	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	32031024	rs4449357	C	T	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	32031135	rs6419811	A	G	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	32031615	rs13064905	A	C	12649.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=45.34;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	32031622	rs13087612	T	C	13443.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=45.42;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	32031643	rs13065048	A	G	12899.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	32031962	.	A	G	2965	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=22;MQ=57.07;NF=136;NR=128;PP=2965;QD=20;SC=AAGACCTTCCATCACAATTCA;SbPval=0.52;Source=Platypus;TC=267;TCF=138;TCR=129;TR=264;WE=32031970;WS=32031952;set=Platypus	GT:AD:AF:DP	1/1:3,264:0.99:267
chr3	32032397	rs4955216	G	T	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	32411292	rs17029319	G	A	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	32493682	rs342745	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	32495645	rs72858838	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	32766905	rs6550155	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	32801173	rs9832822	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	32805828	.	C	CA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.547;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr3	32815231	rs2396631	A	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	32915214	rs6799979	C	G	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	32927509	rs6774703	G	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	32933129	rs75763149	G	A	10240.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	33055721	rs4302331	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	33063050	rs13093698	A	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	33093190	rs12632196	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	33099880	rs7637435	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	33138544	rs7614776	A	G	21666.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr3	33138549	rs7637099	G	A	21907.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr3	33165303	rs4320036	C	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	33165436	rs6777433	T	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	33171659	rs4392367	A	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	33175793	rs4234239	C	A	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	33194990	rs6810039	C	A	18179.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr3	33255592	rs9637517	A	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	33434751	.	A	G	633.77	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	33444286	rs623244	T	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	33612364	rs67476972	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.19;ReadPosRankSum=0.732;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	33618551	rs11391504	G	GA	296.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	33840114	rs1141054	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	33853747	rs9851801	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	33853764	rs150795546	GAAGA	G	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	33863369	rs72619958	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	33863683	rs3762817	A	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	33866868	rs12488699	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	33866929	rs12495243	G	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	33877508	rs3792595	T	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	33877626	rs3792594	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	33879602	rs78289090	CTA	C	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	33887102	rs11928792	A	G	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	33887178	rs11928817	A	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	33895391	rs3183982	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	33905471	rs11922311	A	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	33905566	rs1127732	C	T	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	33905781	rs9848414	A	G	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	33907835	rs5847794	T	TCTCC	1972.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.12;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	33907945	rs3183987	A	G	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	35724256	rs1513475	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	35725250	rs969818	C	T	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr3	35731725	rs1513476	C	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	35756778	rs2305233	A	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	36422403	rs62245718	T	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	36524405	rs2290530	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	36534622	rs3217654	CTCTT	C	8672.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	36547427	rs114854136	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	36759450	rs114769020	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	36876154	rs3796186	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	36896653	rs9818599	G	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	37034946	rs1800734	G	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	37096024	rs749072	T	C	6443.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.276;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=1.700;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:1,252:1.00:253
chr3	37100166	rs58404365	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=2.593;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr3	37163039	rs336595	G	A	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	37695192	rs3821909	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	37774304	rs58228096	C	T	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	37778481	rs1118148	G	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	37778615	rs2276866	A	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	37953024	rs13099971	G	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	37953083	rs13079669	T	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	38009700	rs11719907	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	38009749	rs1573291	C	T	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	38022139	rs11719578	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	38023553	rs10095	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	38025750	rs60500371	CA	C	2510.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	38035508	rs7648182	G	A	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	38038982	rs6809649	T	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	38039187	rs6550514	C	T	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	38044143	rs9311172	C	G	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	38044592	rs9875248	C	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	38046023	rs9843506	A	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	38047954	rs9816693	G	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	38051941	rs9857730	T	C	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	38052760	rs61757726	C	T	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	38053206	rs9758003	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	38071137	rs9882878	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	38080952	rs7625806	T	G	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr3	38081031	rs7616776	A	T	10229.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr3	38104353	rs3752614	G	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	38125591	rs7632139	C	T	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	38125705	rs7652276	G	A	7437.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr3	38125844	rs62240733	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	38125880	rs374790897	GGTA	G	2963.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=41.16;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	38134438	rs11129778	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	38137982	rs28559718	C	T	44.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	38142082	rs9847922	G	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	38151731	rs12630114	T	C	11055.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-0.438;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:4,434:0.99:438
chr3	38156633	rs80150775	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	38158347	rs75614900	C	T	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	38257567	.	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.38;ReadPosRankSum=2.193;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	38265107	.	A	AT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.905;QD=4.55;ReadPosRankSum=0.532;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	38271881	rs6599079	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	38289251	rs3925158	C	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	38293904	rs9880223	G	A	8123.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	38348686	rs753330	T	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	38350479	rs818819	T	C	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	38350519	rs818818	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	38350543	rs818817	A	G	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	38350630	rs704929	C	A	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	38355176	rs11268633	T	TGTGTGTGTGTGCGCGCGC	1643.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	38357010	rs41285123	A	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	38390020	rs2615631	C	A	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	38401677	rs818851	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	38401839	rs818850	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	38401918	rs818849	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	38402007	rs818848	T	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	38406648	rs704942	T	C	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	38406773	rs704943	G	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	38408248	rs704946	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	38408361	rs843890	G	A	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	38408459	rs2234617	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	38409600	rs704947	T	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr3	38411731	.	G	GCA	324.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr3	38519424	rs2070489	A	G	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	38522770	rs77120320	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	38524086	rs77316668	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	38538466	rs1984312	G	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	38540541	rs2300668	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	38541318	rs2300669	C	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	38545349	rs6599206	C	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	38593015	rs41315495	G	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	38593128	.	TG	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.637;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr3	38603801	rs9824500	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	38620907	rs7626962	G	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	38622467	rs7430407	T	C	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	38627629	rs7645173	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	38648062	rs6599222	C	T	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	38655643	rs9856587	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	38671944	rs7627488	GC	AT	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	38674712	rs6599230	T	C	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	38739574	rs6599241	T	C	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	38739845	rs6599242	A	G	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr3	38748833	rs6790627	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	38749026	rs6599248	T	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	38753977	rs6781740	C	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	38763863	rs6771157	G	C	11776.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr3	38764071	rs61487238	C	T	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	38764782	rs4076737	G	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	38764998	rs12632942	A	G	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	38766675	rs6795970	A	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	38768300	rs57326399	T	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	38784029	rs6599250	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	38793989	rs7617919	G	A	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	38798171	rs62244070	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	38802251	rs7641844	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	38813009	rs62244081	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	38888524	rs61752574	G	A	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	38926912	rs6599266	C	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	38941466	rs6809179	A	T	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	38946872	rs4514993	A	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	38949363	rs6599267	A	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	38951753	rs7429404	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	38961537	rs6779297	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	38991560	rs60219362	A	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=76.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	38991562	.	C	CA	313.74	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=78.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	38991569	.	C	G	428.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	39093326	rs6599003	G	A	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	39107993	rs10510698	T	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	39110376	rs34070325	T	TA	495.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.462;QD=16.52;ReadPosRankSum=0.670;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr3	39111140	rs2293312	C	A	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	39119615	rs13077476	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	39125543	rs6777201	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	39125609	rs66531425	CTTAATA	C	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	39129742	rs3736573	A	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	39141096	rs1122818	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	39142624	rs41285138	G	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	39145186	rs7629643	G	A	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	39149092	rs6786764	A	G	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	39149180	rs6786855	A	G	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	39152248	rs7613766	C	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	39152333	rs114253553	G	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	39152345	rs1112438	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	39152575	rs7614000	C	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	39161456	rs1274972	G	A	7798.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.060;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.31;ReadPosRankSum=-0.573;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,175:0.99:176
chr3	39161464	rs1274971	G	A	7937.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.61;ReadPosRankSum=-0.648;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:1,181:0.99:182
chr3	39166509	rs784507	A	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	39166743	rs2669852	T	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	39167905	rs784506	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	39171676	rs35052325	C	T	8550.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr3	39172642	rs12637881	G	A	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr3	39180099	rs784498	T	C	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr3	39184959	rs1274958	C	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	39185248	rs784519	A	G	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	39185968	rs810743	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	39187858	rs13084317	G	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	39225752	rs61736128	C	G	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	39226436	rs58805228	C	T	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	39229900	rs6805248	T	C	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	39230997	rs2271487	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	39425393	rs115072733	G	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	39425400	rs116056544	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	39433147	rs1995236	G	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	39437702	.	GA	G	217.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	39437800	rs9877539	A	G	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	39452209	rs114941012	A	C	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	39541445	rs75476518	G	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	39555052	rs2233205	C	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr3	40204178	rs1714414	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	40231883	rs1317317	C	T	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	40275461	rs34800524	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	40286017	rs4618168	T	C	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	40291836	rs34856047	C	T	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr3	40291877	rs9826171	C	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr3	40352355	rs35523102	AT	A	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.831;QD=1.46;ReadPosRankSum=0.634;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr3	40353259	rs1470937	T	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	40519429	rs4553952	T	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	40523876	rs147556037	AGTGACTCTG	A	1963.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	40557271	.	TTGTGTG	T	278	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=3;MGOF=29;MMLQ=25;MQ=63.59;NF=3;NR=11;PP=278;QD=20.0714285714;SC=AGCACAGATATTGTGTGTGTG;SbPval=0.8;Source=Platypus;TC=17;TCF=5;TCR=12;TR=14;WE=40557286;WS=40557261;set=Platypus	GT:AD:AF:DP	1/0:3,14:0.82:17
chr3	40557305	.	GT	G	71.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.500;MQ=64.70;MQRankSum=-4.278;QD=1.46;ReadPosRankSum=-0.551;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr3	40557307	.	GTGTGA	G,GGTGA	1688.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.70;MQRankSum=2.529;QD=35.18;ReadPosRankSum=-0.490;SOR=0.520;set=HC	GT:AD:AF:DP	1/2:3,7,38:0.15,0.79:48
chr3	40557308	.	TGTGA	GGTGA	577	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.9998,0.9998;HP=2;HapScore=1;MGOF=8;MMLQ=0;MQ=63.7;NF=13,3;NR=9,11;PP=542,577;QD=26.2168732976;SC=TGTGTGTGTGTGTGATATCAG;SbPval=0.64;Source=Platypus;TC=42;TCF=24;TCR=18;TR=22,14;WE=40557320;WS=40557298;set=Platypus	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	40557308	.	TGTGA	T	577	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.9998,0.9998;HP=2;HapScore=1;MGOF=8;MMLQ=0;MQ=63.7;NF=13,3;NR=9,11;PP=542,577;QD=26.2168732976;SC=TGTGTGTGTGTGTGATATCAG;SbPval=0.64;Source=Platypus;TC=42;TCF=24;TCR=18;TR=22,14;WE=40557320;WS=40557298;set=Platypus	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	40557309	.	GTGA	G	936.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.500;MQ=64.76;MQRankSum=4.989;QD=19.52;ReadPosRankSum=0.432;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr3	41274764	rs2691680	C	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	41497165	rs9841301	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	41504866	rs2291758	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	41607701	rs1565957	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	41759191	rs17060938	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	41795841	rs9867627	A	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	41841716	rs4973986	A	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	41861013	rs59543183	GA	G	2110.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	41877473	.	C	CAAAA	335.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.612;QD=23.94;ReadPosRankSum=1.242;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:1,13:0.93:14
chr3	41925423	rs1716687	T	C	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	41938500	rs1717005	G	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	41939993	rs1625226	T	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	41949218	rs115449137	A	G	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	41952781	rs1716991	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	41977214	rs3934103	C	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	41996275	rs7651623	A	G	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	41996304	rs17284472	G	A	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	42133149	rs4974011	C	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	42202061	rs4974003	G	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	42218095	rs1010987	G	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	42226151	rs4234445	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	42234758	rs3816397	C	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	42236415	rs9851455	A	G	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr3	42244321	rs9311309	G	A	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr3	42251263	rs2290134	C	T	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	42251329	rs2290133	C	T	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	42251577	rs10634555	C	CGGA,CGGAGGA	4338.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=297;set=Intersection	GT:AF:DP	1/2:0.11,0.88:168
chr3	42251868	rs3836496	CT	C	1767.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.323;QD=32.74;ReadPosRankSum=1.446;SOR=0.282;set=HC	GT:AD:AF:DP	1/1:1,53:0.98:54
chr3	42264393	rs3733053	A	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	42264422	rs3733054	T	C	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr3	42265634	rs1043610	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	42299870	rs8192472	C	T	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	42660489	rs71709233	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.370;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr3	42687278	rs73085333	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	42733468	rs123509	T	C	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	42735150	rs11079	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	42735274	rs339697	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	42738297	rs2290973	G	A	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	42754912	rs3895740	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	42772180	rs10865921	C	T	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	42774475	rs17074778	G	A	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	42781276	rs62246603	G	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr3	42781316	rs11709500	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	42784630	rs12635736	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	42787469	rs2240859	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	42793337	rs11929390	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	42794333	rs55904344	G	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	42799554	rs111697736	T	TAC	161.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	42799765	rs17238798	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	42799858	rs339678	T	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	42835889	rs6764909	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	42917047	rs9865715	A	G	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	42947776	rs6789928	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	42954912	rs11129987	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	42956273	rs1427801	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	42956984	rs834579	A	G	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	43074871	rs588335	A	G	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	43095245	rs2280565	A	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	43414318	rs6441771	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	43592906	rs9829081	T	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	43602803	rs3772165	C	T	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	43756577	.	CTG	C	178.73	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,23:0.18:130
chr3	44283525	rs9850927	A	G	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	44283672	rs9833423	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	44283808	rs7645375	C	A	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr3	44310592	rs5004668	T	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	44312447	rs11130024	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	44332131	rs11927593	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	44332176	rs1488637	T	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	44345646	rs1488639	A	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	44362408	rs9857957	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	44399668	rs4682970	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	44408864	rs372993721	G	GT	197.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	44437870	rs6441838	A	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	44540791	rs36046723	TTC	T	7891.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	44607013	rs13081859	T	C	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	44609626	rs6765468	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	44611896	rs9835485	A	G	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	44612050	rs9873604	C	T	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	44612895	rs2034476	C	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	44673430	rs28699350	G	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	44840884	rs11717208	C	T	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	44869026	rs4682999	A	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	44871505	rs11710339	A	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	44938492	.	C	CT	31.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=1.036;QD=3.18;ReadPosRankSum=-0.319;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	44986875	.	CCA	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.655;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	45127515	rs9874077	T	C	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	45187581	.	T	TCTCCGCACC	2244.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	45187671	rs1863837	C	T	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.12;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,524:1.00:524
chr3	45187785	rs2276862	C	G	13953.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-1.347;SOR=0.520;set=HC	GT:AD:AF:DP	1/1:1,545:1.00:546
chr3	45267058	rs33750	G	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	45267310	rs41118	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	45267321	rs395917	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	45461102	rs11383389	G	GT	5005.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	45500174	rs745551	C	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	45517799	rs3733117	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	45527099	rs7640603	C	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	45527218	rs7610357	T	C	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	45533224	rs2128361	G	A	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr3	45537973	rs12638088	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	45557707	rs11549809	G	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	45559519	rs2170549	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	45559621	rs2276860	C	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	45565554	rs267220	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	45637830	rs13086458	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	45677635	rs11379880	C	CT	9269.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	45677637	.	GCA	TGC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=31;MMLQ=21;MQ=59.88;NF=55;NR=32;PP=2937;QD=20;SC=CTCTTGTCCTGCAAGGAGCCT;SbPval=0.63;Source=Platypus;TC=93;TCF=57;TCR=36;TR=87;WE=45677647;WS=45677627;set=Platypus	GT:AD:AF:DP	1/1:6,87:0.94:93
chr3	45677638	rs5848762	CA	C	9318.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	45715159	rs35737275	CT	C	561.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.75;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	45715688	rs2578679	G	A	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	45715767	rs2742409	G	A	14933.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:2,579:1.00:581
chr3	45746836	rs1969626	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	45748429	rs2742441	G	A	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	45748435	rs2673039	A	G	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	45754487	rs2742369	C	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	45754749	rs2248991	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	45755730	rs5019353	T	G	156.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=31.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	45755731	rs200685145	TTG	T	147.87	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=36.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	45761115	rs2064062	G	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	45763635	rs2673062	A	G	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	45764246	rs2742448	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	45764544	rs2742449	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	45772742	rs2531755	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	45772772	rs2673055	G	A	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	45773732	rs11709306	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	45776875	rs111484566	CT	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.963;QD=3.02;ReadPosRankSum=-0.025;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr3	45776900	rs1468543	A	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr3	45779136	rs1468542	A	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	45781148	rs3733106	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	45784963	rs9821974	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	45784972	rs10575376	GGT	G	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	45799871	rs2251347	C	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	45799933	rs73060335	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	45804391	rs2191027	C	T	7811.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	45817418	rs758386	A	G	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr3	45821624	rs2252547	T	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	45977899	rs1873002	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	46306130	.	G	T	21	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=1;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=21;QD=27.8856062736;SC=ATAATGAATGGCTCATCATTA;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=46306138;WS=46306120;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	46399208	rs1799864	G	A	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	46449978	rs11266744	A	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	46450070	rs3204849	T	A	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	46480801	rs9110	A	G	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	46482861	rs34000233	G	A	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	46484898	rs7615975	T	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	46484964	rs1042073	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	46487003	rs2269435	A	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	46487750	rs6776504	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	46489015	rs743659	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr3	46490250	rs1475967	A	G	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	46490366	rs2230895	G	A	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	46490474	rs2230894	G	A	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	46491948	rs6774882	T	A	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	46495716	rs17135	C	T	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	46497723	rs4683227	C	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	46501100	rs17078878	C	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	46501213	rs1126478	T	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr3	46501268	rs1126477	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	46501284	rs10662431	C	CCTT	1677.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	46501842	rs4234463	G	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	46501931	rs4683235	C	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr3	46509712	rs72900270	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	46539480	rs4683241	A	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	46654132	rs2139637	G	A	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	46658737	rs9832679	A	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	46658872	rs9870935	G	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	46726948	rs77014442	C	A	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr3	46751073	rs10578999	TAAG	T	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.087;QD=0.98;ReadPosRankSum=1.252;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:160,17:0.10:177
chr3	46852858	rs80252430	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	46967040	rs2290545	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	46982365	rs6804732	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	47018214	rs936181	T	C	14351.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr3	47029426	rs1108301	G	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	47035625	rs936185	G	A	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	47036756	rs11720139	C	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	47038054	rs116456978	G	A	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr3	47038135	rs11396344	C	CA	5058.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	47043622	rs2305635	G	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	47044122	rs11928558	A	T	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	47143087	rs72231601	AGTGT	A,AGT	1426.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.525;QD=25.03;ReadPosRankSum=1.720;SOR=0.721;set=HC	GT:AD:AF:DP	1/2:4,12,41:0.21,0.72:57
chr3	47205502	.	CGCGGCG	C	1351.73	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	47277458	rs1874264	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	47286227	rs6772449	G	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	47287603	rs35871850	A	AT	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	47305928	rs140345125	TTTTTA	T	2846.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	47316725	rs903538	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	47318747	rs924009	T	G	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	47361082	rs2302278	G	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	47376095	rs295450	A	G	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	47449058	rs900688	T	C	10186.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr3	47451411	rs3736177	C	T	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	47452087	rs900689	G	A	18995.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr3	47452118	rs6780013	G	A	19689.77	.	AC=2;AF=1.00;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	1/1:0,758:1.00:758
chr3	47454399	rs6789730	G	A	9520.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=1.786;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:2,380:0.99:382
chr3	47456225	rs6442066	T	C	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	47459380	rs113251658	C	G	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	47459564	rs148152356	CG	C	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	47462200	rs900690	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	47462587	rs900691	A	G	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	47539751	rs2170814	T	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	47554937	rs150532440	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	47603926	rs11456803	A	AT	378.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.28;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	47604299	rs4858839	C	T	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	47614413	rs2280567	G	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	47618953	rs3732530	C	A	8412.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	47645933	rs62262079	A	T	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	47680066	rs12633923	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	47680119	rs12636863	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	47722034	rs34432748	C	CTT	86.87	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=17.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	47762030	rs12495204	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	47770380	rs6442081	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	47770519	rs184251353	G	A	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	47953482	rs182517927	C	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr3	47957769	rs142463147	C	T	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	47960139	.	C	T	981.77	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	48019232	rs6770467	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	48019258	rs6770477	A	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	48209486	rs3731539	C	T	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	48219320	rs3731514	AAC	A	14853.73	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:3,459:0.99:462
chr3	48414197	rs9852211	A	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	48415007	rs4858793	C	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	48416756	rs4858817	A	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	48419897	rs6442117	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	48476431	rs13062723	C	G	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	48515079	rs4858795	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	48518513	.	G	GA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.412;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr3	48538812	.	CCA	C	37	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=37;QD=15.3333333333;SC=AGCCACCAGACCACACACACA;SbPval=1.0;Source=Platypus;TC=18;TCF=2;TCR=16;TR=3;WE=48538821;WS=48538802;set=Platypus	GT:AD:AF:DP	0/1:15,3:0.17:18
chr3	48576483	rs7615170	C	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	48593341	.	T	TA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.592;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	48602523	rs138595277	G	GGGC	8481.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	48624611	rs2255532	C	T	11764.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr3	48681765	rs147930066	CAG	C	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr3	48709758	.	G	GA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.210;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr3	48897078	rs6414612	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	49095590	.	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.891;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	49463926	rs6762593	A	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	49548008	rs2131107	C	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	49548294	rs2329024	T	C	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	49568095	rs2311801	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	49699649	.	C	T	3876.77	.	AC=2;AF=1.00;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	49713753	rs6778597	T	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	49723726	.	G	GC	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-0.761;QD=6.35;ReadPosRankSum=2.418;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	49725929	.	C	T	46	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=27;MQ=51.8;NF=4;NR=0;PP=46;QD=20.1928031368;SC=GCCCCATGCCCACTGAGCCTC;SbPval=1.0;Source=Platypus;TC=16;TCF=13;TCR=3;TR=4;WE=49725937;WS=49725928;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr3	49725948	rs141881740	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr3	49726028	rs62262685	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,99:0.64:154
chr3	49726070	rs62262686	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=52.58;MQRankSum=-3.299;QD=1.08;ReadPosRankSum=-0.249;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:127,25:0.16:152
chr3	49726195	.	T	G	396.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr3	49739276	rs140587538	C	T	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	49760039	rs1466685	T	C	9688.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	49832261	rs6802890	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	49834571	rs6809879	A	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	49842625	rs2234391	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	49842881	rs11400401	T	TG	3369.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=32.09;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	49843723	rs3819325	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	49847642	rs1799844	G	A	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr3	49848414	rs28535523	C	T	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr3	49866584	rs35129566	T	G	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr3	49878264	rs1996663	C	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	49878395	rs1996664	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	49881134	rs2246832	A	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	49884852	rs146175744	AAAGAG	A	737.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=40.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	49928691	rs7433231	T	C	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	50102446	rs115669815	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	50114515	rs7061	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	50129374	rs5848907	T	TA	687.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	50129399	rs2013208	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	50129994	.	CA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.625;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	50144951	rs1061474	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	50148305	rs2301166	C	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	50153356	rs1138536	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	50155887	rs112672304	TGA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.673;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:102,15:0.13:117
chr3	50197097	rs1046953	C	T	12268.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:1,477:1.00:478
chr3	50222926	rs1046956	T	A	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	50223593	rs2073726	T	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	50223977	rs11717349	C	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	50224225	rs12632110	A	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	50225029	rs11711407	A	G	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	50225607	rs148259784	G	GAT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.812;QD=14.08;ReadPosRankSum=1.465;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	50251833	rs5848902	A	AG	4691.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	50255663	rs35926495	C	T	27853.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr3	50255666	rs56048629	C	T	27974.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr3	50306752	rs67324803	G	GC	611.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=29.13;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	50308718	rs4688739	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	50329826	rs1076872	A	G	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	50332697	rs13100173	G	A	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	50339381	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.897;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr3	50357869	rs709210	A	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	50416501	rs5030977	C	T	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	50597092	rs1034405	G	A	7927.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	50609123	rs636168	T	C	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr3	50609624	rs2232248	T	G	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	50645635	rs621975	T	G	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	50645793	rs622502	C	G	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	50678001	rs608961	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	50683809	rs876105	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	50684489	rs4468971	A	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	50685574	rs35676349	CA	C	220.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	51246360	rs4301044	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	51273711	rs1480362	A	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	51273773	rs1480361	T	C	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	51274902	rs11386090	T	TA	4274.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	51393706	rs35251332	C	CAG	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	51395571	rs1542574	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	51418348	rs2241784	G	A	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	51422766	rs13091931	G	T	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	51429486	.	T	A	3053.77	.	AC=1;AF=0.500;AN=2;DP=316;set=Intersection	GT:AD:AF:DP	0/1:157,149:0.49:306
chr3	51469107	rs4611808	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	51469248	rs35971989	A	G	458.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.071;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-1.624;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr3	51517625	.	T	TTG	142	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=24;MQ=57.08;NF=1;NR=3;PP=142;QD=36.25;SC=TTAAACTAGTTTGTGTGTGTG;SbPval=0.12;Source=Platypus;TC=12;TCF=8;TCR=4;TR=4;WE=51517633;WS=51517615;set=Platypus	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	51697493	rs904145	A	G	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	51895850	rs986539	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	51907736	rs7635409	A	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	51908226	rs1505403	T	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=27.60;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	51908430	rs6794320	T	C	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	51911115	rs142612817	TTTC	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=-0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.915;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	51929360	rs34574240	GA	G	1279.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	51936949	rs7635125	T	C	11127.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	51978220	rs28547534	A	G	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr3	51990119	rs28587738	A	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	51990315	rs28651222	A	G	3314.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.278;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=2.075;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,133:0.99:134
chr3	52232979	rs3216487	A	ATTTAC	7192.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=44.68;SOR=1.258;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	52236762	rs352169	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	52237970	rs352168	C	T	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	52238656	rs352167	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	52238677	rs352166	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	52256697	rs352140	C	T	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	52258372	rs352139	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	52272945	rs11441245	C	CG	1579.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52325759	rs2276834	A	G	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr3	52365225	rs199505182	C	T	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	52407041	rs1546737	C	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	52415865	rs770284	A	G	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	52430698	rs365048	A	G	9824.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr3	52453893	rs498778	C	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	52456973	rs2272088	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	52471942	rs82825	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	52477080	rs2016575	T	C	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	52478750	.	G	GCACC	285	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=56;MMLQ=24;MQ=58.09;NF=15;NR=10;PP=285;QD=12.48;SC=CACGGCACACGCAAACTCGGC;SbPval=0.72;Source=Platypus;TC=31;TCF=17;TCR=14;TR=25;WE=52478758;WS=52478740;set=Platypus	GT:AD:AF:DP	0/1:6,25:0.81:31
chr3	52478783	.	CGCACACAAACACTGCACAT	C	2972	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=1;HapScore=1;MGOF=9;MMLQ=24;MQ=63.35;NF=16;NR=29;PP=2972;QD=20;SC=ACTCGGCACACGCACACAAAC;SbPval=0.51;Source=Platypus;TC=49;TCF=17;TCR=32;TR=45;WE=52478809;WS=52478773;set=Platypus	GT:AD:AF:DP	1/1:4,45:0.92:49
chr3	52488202	rs1035002	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	52489564	rs968588	A	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	52492085	rs4687614	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	52492707	rs1541495	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	52505758	rs3065763	G	GAT	1929.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=43.86;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	52506282	rs4312651	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	52506426	rs6784615	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	52506491	rs6445486	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	52507719	rs13094915	G	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	52510592	rs9856575	G	A	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	52512318	rs2109559	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	52513940	rs4687618	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	52518786	rs4687619	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	52523405	rs887515	C	T	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	52524974	rs4687621	A	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	52536308	rs758801	A	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	52536514	rs731831	G	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	52537969	rs4687545	T	C	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	52544470	rs9835659	A	G	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	52546487	rs7644763	C	T	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	52546820	rs2015971	C	T	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	52551265	rs66824127	T	C	3638.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=41.35;ReadPosRankSum=1.287;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:1,87:0.99:88
chr3	52551284	rs67409736	G	T	4372.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=7.686;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=37.06;ReadPosRankSum=0.161;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:2,116:0.98:118
chr3	52552922	.	C	CCCCGCCCCGCCCCGT	1530.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	52553625	rs112646045	TGTAA	T	5551.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	52554304	rs7630214	G	C	13032.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr3	52555316	rs13081028	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	52555957	rs9853056	T	C	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	52556890	rs4434138	A	G	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	52557038	rs4234633	C	T	7904.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	52558008	rs13303	T	C	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr3	52558133	rs13621	T	C	20428.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.906;SOR=0.279;set=HC	GT:AD:AF:DP	1/1:1,806:1.00:807
chr3	52558904	rs34005367	A	T	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr3	52559167	rs72449664	CGGGG	C	6903.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	52561779	rs11711421	C	T	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	52567617	rs66782572	A	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	52584431	rs34372721	T	TCTC	2249.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	52584715	rs2878628	A	G	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	52584787	rs2251219	T	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	52610651	rs17264436	T	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	52621627	rs3733046	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	52637486	rs2276824	C	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	52643307	rs3733045	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	52643685	rs3755806	T	C	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	52659124	rs34215106	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	52676064	.	A	AT	115.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.004;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:99,24:0.20:123
chr3	52676065	rs11719685	C	T	1227.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.176;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:24,91:0.79:115
chr3	52692124	rs2336149	G	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	52692359	rs2590846	C	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	52692428	rs200866604	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.79;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	52696310	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-1.204;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:94,18:0.16:112
chr3	52720080	rs1108842	A	C	9216.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr3	52721305	rs11177	G	A	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	52722266	rs3836492	AT	A	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr3	52722335	rs3774349	A	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	52725718	rs34449110	ATT	A	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=0.168;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	52726695	rs6762813	C	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	52727257	rs2289247	G	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	52728804	rs6976	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	52740182	rs6617	C	G	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	52741581	rs34636695	AT	A	360.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	52778347	rs2268026	T	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	52797634	rs1029871	G	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	52800284	rs2230535	T	C	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	52802402	rs2230534	A	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	52804487	rs13071584	T	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	52813701	rs138880491	C	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	52814256	rs2302417	T	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	52815905	rs2710323	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	52818579	rs2239551	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	52819327	rs2268023	T	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	52820855	rs36051478	CGAAT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	52820981	rs678	A	T	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	52821011	rs1042779	A	G	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	52821177	rs2286798	A	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	52821992	rs68094128	CT	C	11089.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:13,456:0.97:469
chr3	52824610	rs6778329	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	52825462	rs1076425	A	G	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	52825528	rs1075653	T	C	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	52825585	rs9324	T	C	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	52831701	rs2240919	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	52833219	rs2535629	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	52833805	rs3617	C	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr3	52837793	rs4481150	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	52837855	rs2710331	T	C	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	52847601	rs2071044	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	52851137	rs2240917	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	52852060	rs2245538	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	52852538	rs4687657	G	T	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	52853340	rs7620907	G	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	52853747	rs2276815	C	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	52855229	rs2239547	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	52860816	rs2276816	C	T	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	52860936	rs2276817	C	T	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr3	52861211	rs13072536	A	T	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	52864584	rs2071042	A	G	11389.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr3	52864693	rs2071041	T	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	52867288	rs4687661	A	T	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	52867715	rs6787916	G	C	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	52867811	rs6776876	A	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	52868668	.	G	GCA	4341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=15.56;ReadPosRankSum=1.169;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:74,205:0.73:279
chr3	52868670	rs62255421	G	A	10257.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.978;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=36.12;ReadPosRankSum=0.683;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:16,268:0.94:284
chr3	52870618	rs4687663	T	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	52870729	rs11431693	C	CA	3761.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=36.17;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	52874716	rs11292171	GT	G	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.487;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.630;QD=7.52;ReadPosRankSum=-0.859;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr3	52874779	rs7638431	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.81;QD=26.87;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	52877647	rs55829187	C	CA	2330.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.57;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	52877649	rs56008508	G	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	52877720	rs4687668	T	C	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	52878721	rs7650966	G	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	52878746	rs10663469	C	CAG	1489.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	52878825	rs7629528	C	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	52881634	rs5848962	T	TG	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	52883654	rs3216716	CT	C	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr3	52886605	rs2276825	T	C	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	52886914	rs4687675	A	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	52952675	rs10633605	G	GTA	38.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	52960013	rs11360013	GC	G	2561.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	52968801	rs2710315	T	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	53125922	rs11242	T	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr3	53126143	rs2581786	G	A	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	53133526	rs2581829	A	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	53139506	rs2564942	CA	TG	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	53212574	rs2306571	C	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	53213538	rs2035451	C	G	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	53213815	rs3830263	C	CGTGT,CGT	481.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	0/1:0.81:21
chr3	53215799	rs7630325	G	A	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	53216051	rs6445568	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	53217413	rs2306572	A	G	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	53220215	rs2230494	G	A	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr3	53220444	rs6793352	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	53220569	rs45596236	G	A	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	53220652	.	CG	C	2976	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=7;HapScore=1;MGOF=36;MMLQ=24;MQ=59.94;NF=15;NR=40;PP=2976;QD=20;SC=AGTTCCTCAACGGGGGGGACC;SbPval=0.18;Source=Platypus;TC=179;TCF=36;TCR=143;TR=55;WE=53220660;WS=53220642;set=Platypus	GT:AD:AF:DP	1/0:124,55:0.31:179
chr3	53220763	rs3830265	GCTCAGAGC	G	8346.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	53223286	rs67531107	GCTGGT	G	5956.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	53223927	rs1075865	C	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	53224002	rs900495	T	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	53259996	rs3816767	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	53260716	rs2279322	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	53263279	rs3736156	A	G	9516.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr3	53263383	rs138820989	A	G	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr3	53265581	rs17234092	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	53267133	rs6445573	G	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	53267155	rs2242301	G	A	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	53274986	rs62255989	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	53321631	rs9628	A	C	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	53324819	rs201612547	ATGGCAC	A	1594.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	53324915	rs3732834	A	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	53529013	rs312479	T	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	53529140	rs312480	T	C	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	53685006	rs187796549	G	T	2233.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	53839213	.	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	53857676	rs17053532	C	T	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	53880789	rs2232332	A	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	53882661	rs2232333	A	G	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr3	53882673	rs5849009	G	GT	4953.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	53893993	rs189920653	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	53910919	rs11419180	G	GT	319.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	54156724	rs115882849	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	54157710	rs2290132	A	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	54354510	rs9879885	T	C	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	54401650	rs1868506	C	A	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	54401666	rs1868507	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	54419977	rs9836159	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	54676441	rs3832224	CA	C	339.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	54798258	rs3732748	G	A	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	54913354	.	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.966;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr3	54919272	rs1405330	A	G	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	54919351	rs10510774	A	G	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	54928487	rs58625954	G	A	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	54928489	rs58346602	A	T	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	54928496	rs1526595	T	C	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	54930640	rs79621910	C	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	54930773	rs17253119	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	54934054	rs17253231	A	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	54961949	rs4245920	C	T	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	55038898	rs4955827	A	G	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	55041696	rs17321866	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	55107671	rs142830001	A	AGAAG	2182.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	55108234	rs71948046	CACTGACTGAGATGTTCTCTT	C	9814.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	55514766	rs73075443	A	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	55989276	.	TTGTGTGTGTGTGTGTG	T,TTG	2223.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;QD=41.18;SOR=2.480;set=HC	GT:AD:AF:DP	1/2:0,11,43:0.20,0.80:54
chr3	56037025	rs5849124	C	CAT	4255.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	56037241	rs35658351	CA	C	1463.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	56037249	rs34984094	A	AG	1449.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	56041371	rs146206948	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	56591278	rs150150392	T	TGGGGTAAGCA	6121.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.84;QD=41.93;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	56593543	rs12486047	C	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	56593680	rs11130525	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	56597954	rs6769055	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr3	56599258	rs10687224	G	GTATT	204.90	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr3	56605404	rs34099535	T	TA	190.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	56627048	rs1388256	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	56627598	rs1491170	A	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	56650051	rs77152637	A	ACTT	1816.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	56650178	rs9833926	A	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	56653609	rs10534869	CGT	C	8256.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	56654002	rs145212077	GTTTGT	G	3882.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	56658481	rs2291499	G	C	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	56661909	rs143894847	AAAT	A	355.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	56667682	rs9835332	G	C	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	56672608	rs4681945	G	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	56674190	rs1489949	A	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	56694664	rs9820759	C	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	56694877	rs9858728	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	56695060	rs7619465	T	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	56700180	rs34101168	TA	T	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr3	56703746	rs13094666	A	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	56716922	rs958755	T	G	8036.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	56763316	rs1565376	G	A	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	56763328	rs1565377	T	C	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	56771251	rs3772219	A	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	56785556	rs6792241	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	56787451	rs3821412	C	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	56808957	rs12330845	A	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	56809290	rs116469188	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	56932708	rs7633179	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	57011234	rs13080107	T	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	57131529	rs6764188	A	C	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr3	57132200	rs2291462	A	G	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	57137090	rs2247656	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	57138419	rs6780995	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	57139833	rs1545982	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	57139972	rs1545981	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	57140108	rs2035654	G	A	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr3	57148968	rs11916303	C	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	57176502	rs71311806	C	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	57233661	rs12715498	A	T	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	57233679	rs143889572	ATAAAT	A	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	57276258	rs11346575	GA	G	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	57294085	rs10510791	C	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	57294884	rs150865255	CAAATT	C	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	57321916	rs883244	T	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	57323170	rs528035	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	57335705	rs200349291	TACACACACACACAC	T	625.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	57335876	rs4060726	C	T	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	57386148	rs12053975	C	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	57388114	rs6445873	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	57394309	rs4681729	T	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	57401030	rs9811855	A	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	57404995	rs9870842	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	57411006	rs75662476	ACT	A	402.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	57414071	rs4681982	G	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	57414200	rs4681732	T	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	57431721	rs374553614	AAAAT	A	2340.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	57486969	.	A	G	156.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	57509103	rs6768974	T	C	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	57528503	rs9311651	A	G	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	57545169	.	G	GC	3578.73	.	AC=2;AF=1.00;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	58092528	rs2140104	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	58094157	rs2259091	A	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	58095466	rs2708318	G	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	58095500	rs2686635	G	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	58095945	rs2686634	T	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	58097396	rs2686632	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	58104821	.	GTT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.967;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr3	58112440	rs2362903	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	58117664	rs9832565	G	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	58121626	rs6445948	T	A	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	58127827	rs34336464	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	58133803	rs66977380	AT	A	296.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	58140768	rs13075269	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	58145263	rs12634123	G	A	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	58148900	rs139325959	C	A	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	58154177	rs13079906	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	58155230	rs9870243	C	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	58156176	rs4681660	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	58179028	rs3732630	T	C	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	58179318	rs9812109	C	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	58186911	rs4234389	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	58191242	rs17058970	C	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr3	58244368	rs113620714	C	CT	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	58255318	rs17059096	A	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	58270963	rs6774235	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	58303123	rs1473971	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	58318569	rs111676298	A	G	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	58351660	rs111264652	C	CT	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=14.09;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	58355230	rs75261945	C	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	58355273	rs9867320	G	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	58377039	rs6809011	C	T	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	58385194	rs4075152	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	58395490	rs140856155	G	GT	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	58395501	rs34734687	G	GA	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr3	58396024	rs57857883	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	58398466	rs12635366	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	58398813	rs13071422	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	58409126	rs6767498	C	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	58410748	rs76887010	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	58414052	rs6445980	C	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	58414415	rs143575120	CCT	C	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	58415590	rs2070662	C	A	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	58416538	rs4264746	T	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	58491114	rs147398070	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	58520306	rs7611026	G	C	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	58520558	.	G	A	534.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	58520859	rs4681862	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	58575110	rs6445991	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	58621935	rs6791782	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	58855779	.	GTGTC	G	46.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:42,5:0.11:47
chr3	59996927	rs4679626	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	59996969	rs4679627	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	59999690	rs13067835	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	60898271	rs6793737	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	62229553	rs1352882	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	62267213	.	C	CTTTTTTTTTTTT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=62;ExcessHet=3.0103;FS=10.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-1.282;QD=14.62;ReadPosRankSum=0.598;SOR=2.776;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	62278071	rs75752432	C	T	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	62319104	rs76027555	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	62431401	rs10708769	AC	A	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.273;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.48;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	62431402	rs73840192	C	A	57.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.273;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.61;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	62431415	rs6791296	T	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	62459828	.	AT	A	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.193;QD=4.69;ReadPosRankSum=0.612;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	62477233	.	AAC	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.842;QD=8.05;ReadPosRankSum=0.833;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	62498378	rs1376917	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	62536388	rs62243510	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	62556622	rs833663	A	G	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	62571037	rs2659467	G	A	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	62612013	rs2248008	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	62612280	rs2367310	C	T	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	62612294	rs2367311	T	C	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	62612309	rs2367312	G	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	62612342	rs2248023	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	62612385	rs1349591	G	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	62631553	rs4588354	G	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	62636826	rs4688302	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	62647928	rs6770658	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	62739092	rs478123	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	63466382	rs6772726	G	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	63596277	rs6445369	A	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	63821914	rs2637982	C	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	64009508	rs40610	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	64133350	rs27673	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:4,120:0.97:124
chr3	64518994	rs1017537	T	C	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	64526610	rs11130970	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	64526651	rs3841969	CCAATGTG	C	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	64526717	rs3796384	G	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	64526942	rs3796383	A	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	64527321	rs1373163	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	64527336	rs1036919	C	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	64527378	rs1036918	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	64527465	rs1036917	C	T	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	64547477	rs35667547	G	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	64599241	.	C	G	604.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	64633504	rs12715589	A	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	64640206	rs11326156	TA	T	6251.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	64640212	rs59517147	G	T	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	64641150	rs6768305	C	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	65350694	rs55638583	A	G	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	65353448	rs7634490	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	65416648	rs4688566	C	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	65425560	.	TCTG	T	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.933;QD=1.14;ReadPosRankSum=-0.261;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:189,21:0.10:210
chr3	65455947	rs374436373	G	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	65456154	rs62255274	A	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	65456154	.	AAT	TAA	1044	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=1;HapScore=1;MGOF=6;MMLQ=24;MQ=60.0;NF=12;NR=19;PP=1044;QD=35.4021895117;SC=TGTTCACCAGAATCGGCTGCT;SbPval=0.46;Source=Platypus;TC=33;TCF=12;TCR=21;TR=31;WE=65456164;WS=65456144;set=Platypus	GT:AD:AF:DP	1/1:2,31:0.94:33
chr3	65456156	rs62255275	T	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	65464522	rs11409972	G	GT	514.37	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:4,27:0.87:31
chr3	65464625	rs7636096	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	65583600	rs57059846	T	TG	1879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.658;QD=15.04;ReadPosRankSum=1.528;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:41,84:0.67:125
chr3	65595659	.	A	AATAGACCATTCTGAGGTAGAAGGAAAGGAAGGAAAGAGAGAAGGGGAAGGAACTGGGAGAAGAGAAGGGGAGAGGGAGAGAGGAAGGGAAAGAG	615.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=39.035;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.41;ReadPosRankSum=0.730;SOR=4.796;set=HC	GT:AD:AF:DP	1/1:6,13:0.68:19
chr3	65607592	rs112243102	T	TCA	330.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	65607637	rs3749455	A	G	376.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=1.738;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr3	66023592	rs28696109	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	66286929	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.401;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.902;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr3	66287056	rs146159281	G	A	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	66293582	rs28589457	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	66293851	rs1678092	T	C	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	66354911	rs813636	G	C	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr3	66354929	rs142057565	TTG	T	9430.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	66396845	rs332354	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	66406415	rs783129	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	66413111	rs332387	G	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	66413130	rs332386	T	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	66419956	rs13874	C	T	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	66428282	rs1046844	C	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	66431280	rs9877201	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	66432680	rs332371	A	G	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	66432845	rs9868503	G	A	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	66433312	rs900172	A	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	66433676	rs900171	A	G	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	66433937	rs9872772	T	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	66434372	rs3830215	T	TCACACACA,TCACACACACACA	1300.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.34;MQRankSum=0.492;QD=52.03;ReadPosRankSum=-0.764;SOR=0.223;set=HC	GT:AD:AF:DP	1/2:1,5,19:0.20,0.76:25
chr3	66436546	rs61751731	C	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	66444615	rs6793110	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	66454513	rs78507788	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	66456098	rs9858545	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	66463286	rs116629943	C	T	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	67048762	rs4856833	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	67276059	rs9868022	G	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	67426125	rs1065399	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	67426281	rs35494829	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	67660040	rs2290174	G	A	2660.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.13;ReadPosRankSum=-0.909;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr3	67660049	rs2290175	A	G	2511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.57;ReadPosRankSum=-0.654;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr3	67660149	rs11286754	GA	G	156.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	67705028	rs148715548	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	69036707	rs4855542	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr3	69037633	rs9310136	G	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	69038217	rs4855543	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	69053447	rs9860095	A	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	69054212	rs11320020	CA	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.667;QD=9.10;ReadPosRankSum=1.887;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr3	69091640	rs9985501	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	69093598	rs2271118	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	69096614	rs2292199	G	A	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr3	69104695	rs6549179	T	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	69104752	rs6549180	C	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	69137219	rs3853158	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	69137539	rs3853159	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	69138788	.	TA	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.791;QD=4.07;ReadPosRankSum=1.061;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	69153854	rs7038	G	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	69225588	rs11128118	T	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	69225875	rs9872199	T	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	69225911	rs9868107	A	G	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	69229976	rs12054011	G	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	69230026	rs9818314	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	69230061	rs9831516	G	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	69230801	rs9836305	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	69242770	rs11310698	CA	C	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:5,58:0.92:63
chr3	69244162	rs9853587	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	69245454	rs9310141	T	C	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	69245949	rs9860235	G	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	69246152	rs13059488	A	G	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	69246274	rs13059687	A	G	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	69265291	rs7643175	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=29.69;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	69265304	rs77475566	C	CA	919.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	69265371	rs62254460	G	C	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	69265580	.	C	CT	55.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.755;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	69267578	rs4855301	A	T	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	69271206	rs6549189	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	69273656	rs9848940	G	T	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	69359704	.	A	AACACACACAC	657.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;QD=41.11;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	69359734	rs13324422	G	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=42.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359736	rs62254067	G	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=42.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359738	rs62254068	G	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=42.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359740	rs62254069	G	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=42.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359742	.	G	C	463.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=42.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359744	.	G	C	463.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=42.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69359746	rs76180481	G	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.34;QD=42.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	69362722	rs2314992	C	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr3	69362877	.	T	C	293.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	69435179	rs200537325	C	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	69988437	.	G	GT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.225;QD=4.72;ReadPosRankSum=-1.405;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr3	71007272	rs199626546	C	CT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.772;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	71007347	.	C	CA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.678;QD=0.38;ReadPosRankSum=-0.951;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:284,58:0.17:342
chr3	71007361	rs1053797	G	T	10292.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=6.184;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=17.145;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.249;QD=25.54;ReadPosRankSum=1.948;SOR=0.470;set=HC	GT:AD:AF:DP	1/1:13,390:0.97:403
chr3	71015021	rs7638391	G	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	71019750	rs9874207	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	71247304	rs2037474	A	G	15194.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr3	71247576	rs9855825	A	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	71748911	rs62246325	A	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	71759717	rs12487242	C	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	71834238	.	T	C	673.77	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	72495593	rs11460842	T	TA	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.949;QD=11.62;ReadPosRankSum=0.315;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:9,37:0.80:46
chr3	72495777	rs13066407	C	G	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	72495945	rs13088771	A	G	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	72799703	rs35178407	C	T	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	72891736	rs2036446	A	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	72937359	.	GGCC	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr3	72957734	rs11283456	C	CAGTGTTTA	4893.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.49;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	72971341	rs1502755	C	T	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr3	73004272	rs115667885	A	C	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr3	73046508	rs9834246	G	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	73046544	rs9310254	T	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr3	73096591	rs71277513	A	ATAAT	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	73110076	rs726029	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	73111368	rs2231924	T	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:3,99:0.97:102
chr3	73111809	rs2231926	A	G	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr3	73111973	rs2231928	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	73111998	rs1060584	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	73112974	rs11708712	A	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	73114003	rs61188513	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	73433369	rs3205537	G	A	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	73433494	rs13091636	T	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	73437112	rs6549532	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	73437225	rs3830251	T	TA	88.82	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=14.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	73440108	rs35427155	G	GA	874.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr3	73453186	rs183624129	C	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	73453201	rs2291464	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	73453325	rs2291463	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	73651469	rs6797804	C	T	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	73651621	rs11343439	TA	T	866.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr3	73673533	rs6803430	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	73673578	rs6763344	G	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	74315580	rs615824	C	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	74350997	rs475988	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	74351031	rs73841824	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	74351998	rs77822086	T	A	2121.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	74352061	rs672784	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	75386297	rs6769147	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	75386380	rs4677501	T	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	75679893	rs200917196	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=43.34;MQRankSum=-3.511;QD=3.02;ReadPosRankSum=0.221;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr3	75679937	rs141031386	G	A	2120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=45.72;MQRankSum=-5.130;QD=7.71;ReadPosRankSum=0.477;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:208,67:0.24:275
chr3	75679944	rs201399352	C	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=-0.961;QD=5.13;ReadPosRankSum=0.596;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:221,99:0.31:320
chr3	75679958	rs200114452	C	T	3034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.40;MQRankSum=-8.371;QD=7.28;ReadPosRankSum=0.933;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:317,100:0.24:417
chr3	75679973	rs183720508	A	G	3529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=46.55;MQRankSum=-11.381;QD=6.21;ReadPosRankSum=0.349;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:427,141:0.25:568
chr3	75680010	rs75174508	T	C	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.40;MQRankSum=-11.241;QD=3.29;ReadPosRankSum=3.017;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:534,158:0.23:692
chr3	75680109	rs199802601	G	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=45.45;MQRankSum=-1.206;QD=3.08;ReadPosRankSum=0.206;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:96,28:0.23:124
chr3	75680122	.	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.62;MQRankSum=-1.342;QD=7.18;ReadPosRankSum=0.946;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr3	75680133	rs200731407	G	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.95;MQRankSum=-1.448;QD=13.42;ReadPosRankSum=0.719;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	75680143	rs201369225	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.20;MQRankSum=0.190;QD=1.80;ReadPosRankSum=-0.142;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr3	75786440	rs145944373	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.31;QD=24.87;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	75786753	rs3009020	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	75786832	rs11122676	C	T	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	75986663	rs12171318	C	A	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr3	75986686	rs62269817	A	G	3402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-7.282;QD=28.12;ReadPosRankSum=0.702;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:30,91:0.75:121
chr3	75986686	.	ATGGGCTCCG	GTGGGCTCCA,GTGGGCTCCG	475	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=96;MMLQ=13;MQ=49.0;NF=24,55;NR=20,43;PP=475,401;QD=12.0106335196;SC=GGATGTGGACATGGGCTCCGG;SbPval=0.36;Source=Platypus;TC=122;TCF=73;TCR=49;TR=44,98;WE=75986703;WS=75986676;set=Platypus	GT:AF:DP	0/1:0.36:122
chr3	75986695	rs79015247	G	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-3.392;QD=4.13;ReadPosRankSum=1.610;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr3	75986717	rs78834776	G	A	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-2.818;QD=6.02;ReadPosRankSum=0.360;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:103,59:0.36:162
chr3	75986719	rs62269818	G	C	4354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-7.972;QD=25.92;ReadPosRankSum=2.597;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:49,119:0.71:168
chr3	75986794	.	G	A	1141	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=74;MMLQ=27;MQ=49.49;NF=25;NR=48;PP=1141;QD=16.1064549664;SC=AGTTGGATGCGAATTTCACTT;SbPval=0.68;Source=Platypus;TC=115;TCF=43;TCR=72;TR=73;WE=75986802;WS=75986784;set=Platypus	GT:AD:AF:DP	1/0:42,73:0.63:115
chr3	75986874	rs7610755	G	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	77607070	rs5850333	A	AC	4077.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	77644200	rs75991590	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	77645946	rs35328861	CT	C	689.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.369;QD=16.82;ReadPosRankSum=-0.846;SOR=0.578;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr3	78663958	.	G	GA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.499;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr3	78676405	rs7625555	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	78676467	rs7636043	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	78700779	rs3925684	C	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	78700901	rs6795556	G	T	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	78706519	rs9818170	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	78706553	rs3832208	AT	A	230.94	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr3	78708810	rs10662787	A	AAT,AATAT	1118.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;set=Intersection	GT:AF:DP	1/2:0.26,0.71:31
chr3	78709044	rs9829907	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	78717343	rs2271151	C	T	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	78719577	rs9309810	C	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	78844636	.	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-5.352;QD=1.30;ReadPosRankSum=-4.431;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr3	81539728	rs116593255	C	T	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:94,189:0.67:283
chr3	81584268	.	CTT	C,CT	1647.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=4.137;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.422;QD=13.96;ReadPosRankSum=1.057;SOR=1.403;set=HC	GT:AD:AF:DP	1/2:15,36,67:0.31,0.57:118
chr3	81643167	rs2172397	T	C	11052.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	81698130	rs2229519	T	C	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.117;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:59,86:0.59:145
chr3	81792592	rs3772889	T	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr3	81810702	rs11391701	A	AG	4001.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	81810725	rs2290081	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr3	84962887	rs140769536	T	TC	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=3.820;QD=8.50;ReadPosRankSum=1.865;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:110,63:0.36:173
chr3	85434950	rs3086134	C	CTT	1050.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.155;QD=19.83;ReadPosRankSum=0.540;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:6,47:0.89:53
chr3	85851246	rs7613828	T	C	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:253,157:0.38:410
chr3	86010600	rs9819556	G	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:123,162:0.57:285
chr3	87100447	rs9831869	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:46,106:0.70:152
chr3	87100893	rs2256481	G	A	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:58,128:0.69:186
chr3	87276699	rs2279720	C	T	8770.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:309,437:0.59:746
chr3	87295049	rs11540913	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr3	87299075	rs1044499	A	C	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr3	88189637	.	C	G	759.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:113,46:0.29:159
chr3	88190768	rs7432826	C	A	8269.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr3	88190809	rs7432838	C	T	7826.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	89156884	rs72919864	C	G	20469.77	.	AC=1;AF=0.500;AN=2;DB;DP=1691;set=Intersection	GT:AD:AF:DP	0/1:672,1004:0.60:1676
chr3	89456555	rs3792572	T	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:195,132:0.40:327
chr3	89468589	rs7629509	T	C	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=2.379;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:43,75:0.64:118
chr3	89498428	rs1398197	G	A	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:452,305:0.40:757
chr3	89498619	rs1028011	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	89521693	rs35124509	T	C	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,396:0.99:398
chr3	90264768	rs6803112	A	G	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:59,104:0.64:163
chr3	93611900	rs78449232	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr3	93646209	rs7614835	C	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.484;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr3	93768420	.	G	GA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.677;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr3	93781840	rs75276457	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr3	94225723	rs142666919	A	T	323.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=43.74;MQRankSum=1.364;QD=19.05;ReadPosRankSum=-0.560;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr3	94225786	rs1906643	G	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.386;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=3.203;QD=13.90;ReadPosRankSum=-1.672;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr3	96712868	rs2612275	A	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	96962733	rs1392696	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.375;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	97194242	rs16838751	C	T	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:221,221:0.50:442
chr3	97194317	rs2305893	T	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:103,77:0.43:180
chr3	97194366	rs59354013	T	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr3	97194422	rs7624823	T	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	97198301	rs3217695	GA	G	881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.257;QD=9.09;ReadPosRankSum=-0.707;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:42,55:0.57:97
chr3	97331389	rs9841964	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	97356952	rs7614900	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	97365038	rs301948	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.835;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr3	97365074	rs301949	A	G	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=2.146;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:48,37:0.44:85
chr3	97367230	rs3214668	C	CA	2058.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr3	97467361	rs138837886	ATCTC	A	3672.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:73,110:0.60:183
chr3	97486862	rs3806613	C	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	97499441	rs77906443	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	97499654	rs10935082	T	A	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	97510748	rs199744582	TTATTA	T	2152.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr3	97541018	rs974572	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-1.271;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:25,38:0.60:63
chr3	97593380	rs2279898	G	A	4870.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:197,245:0.55:442
chr3	97593485	rs2279897	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:124,99:0.44:223
chr3	97605677	rs831902	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr3	97607290	rs13065340	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:127,133:0.51:260
chr3	97611916	rs1506441	A	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-1.094;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	97619250	rs5851085	C	CAACTA	631.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	97631174	rs74917880	A	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-1.964;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	97651884	rs4857298	A	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,76:0.50:151
chr3	97660084	rs11544446	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr3	97660106	rs4857302	A	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr3	97660198	rs832089	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	97664725	rs2172257	C	T	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:218,272:0.56:490
chr3	97673268	rs832079	A	C	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	97673421	rs116673089	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr3	97686389	rs35391656	C	G	3842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.745;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:216,196:0.48:412
chr3	97726747	rs832032	T	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr3	97727727	rs832030	G	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr3	97727753	rs832029	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr3	97731434	rs11426005	C	CA	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr3	97744267	.	T	C	97.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	97744611	rs832041	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	97805954	rs13082722	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr3	97806616	rs4518168	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:118,73:0.38:191
chr3	97806683	rs116794845	G	A	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:112,150:0.57:262
chr3	97806999	rs6439602	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	97823382	.	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-3.124;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	97823675	.	G	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.64;ReadPosRankSum=-0.712;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	97851998	rs9845327	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.64;QD=32.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	97852083	rs9826076	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	97852211	rs72926074	G	A	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	97868418	rs77954988	TG	CT	6687.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;JOINED;set=Intersection	GT:AD:AF:DP	0/1:164,171:0.51:335
chr3	97868521	rs111228762	A	G	3416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=3.605;QD=11.47;ReadPosRankSum=1.703;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:132,166:0.56:298
chr3	97868529	rs113155361	G	A	4341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-3.671;QD=15.67;ReadPosRankSum=-1.751;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:158,119:0.43:277
chr3	97868532	rs112877568	G	T	4213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-3.677;QD=16.21;ReadPosRankSum=-2.334;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:148,112:0.43:260
chr3	97868538	rs113248833	G	C	4018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.399;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-3.664;QD=16.34;ReadPosRankSum=-1.569;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:146,100:0.41:246
chr3	97868547	rs200154783	CA	TG	3320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=5.042;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-3.451;QD=15.81;ReadPosRankSum=-1.596;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:128,82:0.39:210
chr3	97868559	rs112645563	G	A	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.666;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-2.932;QD=7.36;ReadPosRankSum=-1.375;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:111,65:0.37:176
chr3	97868703	rs181133249	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=-2.239;QD=7.84;ReadPosRankSum=-1.768;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	97868710	.	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=50.76;MQRankSum=-2.373;QD=7.12;ReadPosRankSum=-0.328;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	97868712	.	A	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-2.295;QD=10.63;ReadPosRankSum=-0.356;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	97868720	rs202192988	T	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-1.927;QD=13.62;ReadPosRankSum=0.085;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	97868725	.	C	T	258.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	97868738	rs185929468	AC	GT	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	97868795	rs4857076	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=25.17;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	97868856	rs72927996	T	C	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.264;QD=6.39;ReadPosRankSum=1.100;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:78,46:0.37:124
chr3	97868931	rs76146040	G	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.034;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	97868938	rs80138979	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=0.571;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	97868970	rs12639519	T	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	97869111	rs75547468	C	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.444;QD=9.10;ReadPosRankSum=0.415;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr3	97869191	rs60229583	C	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.268;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr3	97869195	rs112561363	A	T	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.106;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	97869206	rs201065839	A	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.787;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr3	97869211	rs58258612	G	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-1.865;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr3	97869394	rs59001714	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	97869444	rs57871688	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr3	97887853	rs148620705	A	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-14.933;QD=0.55;ReadPosRankSum=4.578;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:754,117:0.13:871
chr3	97887864	rs116301500	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-16.464;QD=0.54;ReadPosRankSum=5.947;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:742,117:0.14:859
chr3	97887865	rs4133320	G	A	6803.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	0/1:492,369:0.43:861
chr3	97887944	.	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=4.781;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-10.928;QD=0.73;ReadPosRankSum=-3.909;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:215,31:0.13:246
chr3	97887957	rs143003334	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-12.024;QD=0.73;ReadPosRankSum=-3.325;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:172,18:0.09:190
chr3	97887963	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=4.158;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-11.239;QD=0.27;ReadPosRankSum=-2.693;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:162,14:0.08:176
chr3	97888197	rs7623031	C	T	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	97888239	rs138282085	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr3	97888322	rs11408838	T	TG	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr3	97888523	rs7623331	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr3	97888541	rs113549034	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	97888544	rs7637109	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	97983040	rs4241470	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr3	97983117	rs4241471	A	G	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:150,157:0.51:307
chr3	97983257	rs2132894	C	G	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr3	97983391	rs2173236	C	G,T	11026.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=494;set=Intersection	GT:AF:DP	1/2:0.46,0.54:482
chr3	97983487	rs74203917	TTGTAACCAC	T	4193.73	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:252,204:0.45:456
chr3	97983561	rs9289564	G	C	13373.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr3	97983664	rs16846784	C	T	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:140,159:0.53:299
chr3	97983699	rs58475490	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr3	97983711	rs9853887	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr3	97983942	rs9853906	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	97983981	rs9871143	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr3	97984220	rs7630932	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr3	98001777	rs72487753	G	C	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:89,115:0.56:204
chr3	98002419	rs16839214	A	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr3	98002587	rs16839611	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:88,106:0.55:194
chr3	98072715	rs77559509	C	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,90:0.50:181
chr3	98073207	rs76602063	G	A	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:162,126:0.44:288
chr3	98073591	rs11288615	TA	T	509.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr3	98109709	rs58422508	T	C	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:208,240:0.54:448
chr3	98109873	rs57067643	T	C	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:97,185:0.66:282
chr3	98110038	rs73854830	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr3	98110306	rs73854831	G	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-2.341;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr3	98110406	rs144759043	G	GA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.401;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr3	98110498	rs73854832	G	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=2.600;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	98188606	rs76190074	T	G	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:332,307:0.48:639
chr3	98220243	rs73140298	C	A	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:84,65:0.44:149
chr3	98225441	rs1132750	A	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	98240115	.	C	T	2648.77	.	AC=1;AF=0.500;AN=2;DP=339;set=Intersection	GT:AD:AF:DP	0/1:176,141:0.44:317
chr3	98241656	rs141965800	C	A	12549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=1370;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.965;QD=9.37;ReadPosRankSum=-1.749;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:695,645:0.48:1340
chr3	98251615	rs35465749	C	T	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:195,177:0.48:372
chr3	98304375	.	A	G	1493.77	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr3	98304467	rs1729995	T	C	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	98307696	rs1131857	T	G	5212.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:243,263:0.52:506
chr3	98475083	rs893832	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.524;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	98482161	rs201211477	CCA	C	6724.73	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:258,196:0.43:454
chr3	98489652	rs16840150	C	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:94,71:0.43:165
chr3	98490141	rs844160	A	T	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	98501080	rs3772100	C	T	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:118,97:0.45:215
chr3	98503683	rs704585	C	T	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	98507130	rs201214347	ACAGC	A	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr3	98518160	rs62821060	T	TA	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:8,54:0.87:62
chr3	98519481	rs1822017	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:135,100:0.43:235
chr3	98519697	rs11374885	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.55;ReadPosRankSum=0.696;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	98540982	rs852701	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr3	98541012	rs866873	G	A	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	98541116	rs828616	G	A	5747.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:303,296:0.49:599
chr3	98541422	rs828617	G	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	98542485	rs142035943	G	GAAGAA	1581.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	98544123	rs11341324	CA	C	63.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=7.94;ReadPosRankSum=-1.534;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr3	98544353	rs828622	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	98619997	rs17852693	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:105,94:0.47:199
chr3	99649584	rs115459205	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	99904783	rs12629505	G	A	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	100015146	rs3772698	G	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr3	100034849	rs4928169	A	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	100053684	rs3830303	C	CG	183.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	100057846	rs1214381	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	100058102	rs166747	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	100060135	rs1228184	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	100067468	rs277649	C	T	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	100084432	rs277644	G	A	6878.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	100086861	rs277640	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	100092526	rs11384494	A	AG	4754.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	100092527	.	G	GGTGC	2957	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=48;PP=2957;QD=20;SC=AATTCAACTAGTCCAGTTAAG;SbPval=1.0;Source=Platypus;TC=63;TCF=0;TCR=63;TR=48;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/1:15,48:0.76:63
chr3	100092528	.	T	A	1296	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=14;NR=49;PP=1296;QD=21.1233525801;SC=ATTCAACTAGTCCAGTTAAGT;SbPval=0.63;Source=Platypus;TC=67;TCF=16;TCR=51;TR=63;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/1:4,63:0.94:67
chr3	100092528	rs3832198	T	TGCA	4779.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.41;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	100119548	rs7645509	T	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:232,165:0.42:397
chr3	100238231	rs67473840	ATG	A	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr3	100277476	rs7645690	G	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr3	100277514	rs7645700	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr3	100354683	rs1520652	G	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	100354698	rs1718281	T	A	1467.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.11;ReadPosRankSum=1.451;SOR=0.564;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr3	100365533	rs115472303	C	T	3646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=1.870;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:169,184:0.52:353
chr3	100368425	rs7622958	A	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	100368692	rs1144118	A	G	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr3	100374740	rs9866111	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	100432752	rs9824942	A	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.062;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	100463651	rs377381727	TTG	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.323;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:418,52:0.11:470
chr3	100467018	rs11353	T	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	100473505	rs10936352	C	T	9937.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	100493422	rs9846590	G	A	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	100497098	rs9877951	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	100511379	rs989794	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	100511428	rs989793	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	100511446	rs989795	T	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	100536284	rs12632235	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr3	100539887	rs7615467	C	T	3749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.876;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:198,193:0.49:391
chr3	100541629	rs116538350	C	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr3	100542463	rs61061653	C	CAAAA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.612;QD=23.62;ReadPosRankSum=0.642;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	100543944	rs13069634	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	100548552	rs138495665	G	A	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:130,99:0.43:229
chr3	100549242	rs74855982	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr3	100551066	rs9845149	G	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr3	100558416	rs9841585	T	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	100559755	.	G	T	708.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr3	100560745	rs66923918	GA	G	171.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	100565031	rs6774830	G	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	100566571	rs3806656	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	100581261	rs10567225	AT	A	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.827;QD=5.62;ReadPosRankSum=-1.305;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:51,56:0.52:107
chr3	100583595	rs73864017	C	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.734;QD=6.93;ReadPosRankSum=-0.763;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:66,45:0.41:111
chr3	100583651	rs10711419	GA	G	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.291;QD=4.29;ReadPosRankSum=-1.801;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr3	100585694	rs3732899	C	G	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.072;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:110,91:0.45:201
chr3	100594326	rs3839090	CGGCATA	C	8327.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	100595246	rs113298939	C	CA	63.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	100604552	rs143627647	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	100605206	rs1987384	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr3	100617680	rs2245370	C	T	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:116,84:0.42:200
chr3	100621426	rs2576365	C	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:103,78:0.43:181
chr3	100621579	rs78181063	T	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr3	100945069	rs146849728	TTATATATATATATATATATATATATATATATATATATA	T	112.84	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.61;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	100945983	rs486352	A	T	127.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	100946742	rs521661	T	G	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	100949842	rs348867	G	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	100963154	rs571391	G	A	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	100976755	rs7613046	G	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr3	100992385	rs348866	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr3	100994497	rs533852	C	T	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:72,99:0.58:171
chr3	101038339	rs546090	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	101039107	rs573908	A	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	101066717	rs2433031	T	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	101066992	rs2553421	A	T	63.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	101070555	rs201888783	AT	A	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.487;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:46,39:0.46:85
chr3	101085683	rs58636547	TAAAAA	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	101231863	rs71625584	GCTGCCGC	G	2602.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr3	101284119	rs201910479	T	A	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,120:0.60:199
chr3	101293108	rs200604475	G	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:138,131:0.49:269
chr3	101299031	rs144008875	CAAT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	101304414	rs3804776	G	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	101308846	rs6441614	G	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	101370529	rs56200814	TA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.518;QD=2.46;ReadPosRankSum=-1.338;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr3	101389864	rs9837549	T	C	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	101404813	rs2303473	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	101443461	rs994573	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	101484335	rs2625282	G	A	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	101504624	rs2625289	A	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	101571550	rs587555	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	101572822	rs2925334	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr3	101574150	rs76012355	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr3	101574503	rs677011	G	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	101575882	rs595788	T	C	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.653;QD=10.36;ReadPosRankSum=-1.855;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:41,101:0.71:142
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	16659.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=57.85;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	101576175	rs14134	T	C	4557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.766;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:257,234:0.48:491
chr3	102183182	rs76383575	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.136;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	102195877	rs369331610	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr3	103242937	rs59323834	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=2.122;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	105238890	rs66614014	CTT	C,CT	9011.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=3.424;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=-8.227;QD=20.30;ReadPosRankSum=-1.005;SOR=0.703;set=HC	GT:AD:AF:DP	1/2:5,227,212:0.51,0.48:444
chr3	105238901	rs2291376	T	C	4539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.277;QD=9.28;ReadPosRankSum=-0.501;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:252,237:0.48:489
chr3	105243389	rs9875739	T	C	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:96,124:0.56:220
chr3	105252377	rs2171146	G	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr3	105260518	rs579565	G	A	3920.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:251,208:0.45:459
chr3	105260596	rs599278	T	C	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	105389153	rs11713094	A	G	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-2.218;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:102,108:0.51:210
chr3	105404031	rs16851440	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	105412286	rs10635036	C	CTT	1931.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	105422844	rs2305037	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr3	105438806	rs7624400	G	A	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	105438957	rs2305036	T	G	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:119,118:0.50:237
chr3	105439026	rs2305035	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr3	105452751	rs1992520	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	105453034	rs6768096	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	105455955	rs2289746	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr3	105468330	rs1443098	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	105495432	rs9809911	G	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	105586538	rs2221379	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	105588069	rs11711088	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr3	107096547	rs709564	G	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:178,176:0.50:354
chr3	107447522	rs76849035	G	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	107451907	rs4855764	C	T	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr3	107519843	rs1532325	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	107524112	rs3840144	G	GT	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	107647001	rs34976355	C	CA	3738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.469;QD=8.02;ReadPosRankSum=-0.537;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:214,252:0.54:466
chr3	107647011	.	AC	A	2801	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=9;HapScore=3;MGOF=16;MMLQ=27;MQ=59.86;NF=13;NR=80;PP=2801;QD=20;SC=CAAAAAAAAAACCAAATTCCA;SbPval=0.2;Source=Platypus;TC=186;TCF=19;TCR=167;TR=93;WE=107647020;WS=107646987;set=Platypus	GT:AD:AF:DP	1/0:93,93:0.50:186
chr3	107647012	rs202220654	C	A	3184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.645;QD=6.57;ReadPosRankSum=-0.540;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:279,206:0.42:485
chr3	107768577	rs143758748	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr3	107769230	rs696364	C	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr3	107776511	rs709436	C	T	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	107809798	rs445541	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	107884211	rs327167	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	107910327	.	CT	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-1.028;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:172,35:0.17:207
chr3	107925396	rs3213994	G	A	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:94,54:0.36:148
chr3	107938272	rs115547965	G	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:80,61:0.43:141
chr3	108047314	rs113098825	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	108070556	rs9846218	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	108072243	rs6766283	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.060;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr3	108072298	rs6779254	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr3	108072704	rs6779650	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr3	108076849	rs113861404	A	G	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:171,115:0.40:286
chr3	108081217	rs3792332	C	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:204,178:0.47:382
chr3	108081277	rs6779094	C	A	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:167,157:0.48:324
chr3	108095324	rs111477207	T	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.771;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:103,109:0.51:212
chr3	108096098	rs1463426	C	G	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:136,129:0.49:265
chr3	108096227	rs1463425	G	C	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	108102580	rs79837783	T	C	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.313;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.867;QD=20.29;ReadPosRankSum=1.519;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	108102593	.	A	AT	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.809;QD=24.73;ReadPosRankSum=1.096;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	108107704	rs1463431	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	108117694	rs13087507	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr3	108124161	rs374755517	A	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.99;ReadPosRankSum=1.094;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	108127232	rs9878261	T	C	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:154,185:0.55:339
chr3	108135606	rs56933265	TAA	T	3328.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=44.98;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	108135609	rs116262927	A	T	3337.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=43.92;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	108135799	rs11927603	C	G	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	108140148	rs4593038	A	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	108147295	rs1350235	C	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	108147728	rs3900940	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr3	108156633	rs113832514	A	AAAAG	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	108158574	rs3996040	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr3	108158575	rs140762700	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr3	108172817	rs6437783	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:117,90:0.43:207
chr3	108179219	rs11303627	CA	C	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.895;QD=6.16;ReadPosRankSum=-0.042;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:54,57:0.51:111
chr3	108182168	rs72209198	C	CT	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr3	108188755	rs11917965	A	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr3	108188993	rs9868484	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:93,91:0.49:184
chr3	108189710	rs34103044	A	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:132,90:0.41:222
chr3	108189750	rs12495639	C	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	108195406	rs3996003	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:130,136:0.51:266
chr3	108211869	rs140450152	A	AAAGG,AAAGGAAGG	2057.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.883;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=40.35;ReadPosRankSum=2.355;SOR=3.702;set=HC	GT:AD:AF:DP	1/2:2,26,23:0.51,0.45:51
chr3	108214537	rs2603140	T	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	108224685	.	CA	C	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.628;QD=2.27;ReadPosRankSum=-2.419;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:137,72:0.34:209
chr3	108229122	rs3843872	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.28;ReadPosRankSum=-0.000;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	108229171	rs2249886	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	108229437	rs150536264	G	GA	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.844;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:50,34:0.40:84
chr3	108247928	.	C	T	96.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	108271012	rs2305514	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr3	108273441	rs2045095	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr3	108276012	rs145987829	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	108300373	rs377224133	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.367;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:40,31:0.44:71
chr3	108304027	rs113664965	A	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.627;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr3	108324365	rs41267019	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	108327050	rs10684119	T	TAAC	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-0.420;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	108355423	rs10711079	AT	A	634.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	108355575	rs10711080	CT	C	943.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.407;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.429;QD=14.09;ReadPosRankSum=0.785;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:8,59:0.88:67
chr3	108356375	rs143396703	C	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=1.139;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:22,31:0.58:53
chr3	108356501	rs143129590	T	TTTAAGGTAGTA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	108372964	rs113345476	G	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,44:0.42:105
chr3	108388714	rs112845112	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr3	108393134	rs41267025	T	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,42:0.39:109
chr3	108403086	rs9856097	T	C	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	108403149	rs151259123	G	A	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:225,196:0.47:421
chr3	108405334	rs368665758	G	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,62:0.55:112
chr3	108565815	rs2593831	T	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	108567923	rs2715716	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	108634973	rs10933973	C	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr3	108639270	rs6791441	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	108639384	rs6804162	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	108639423	rs2715687	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	108672514	rs6783631	G	A	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:272,210:0.44:482
chr3	108678002	rs2197738	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	108682218	rs2715755	A	G	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:129,130:0.50:259
chr3	108688689	rs16855060	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	108690221	rs2593943	G	A	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:189,170:0.47:359
chr3	108698627	rs2953338	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	108703422	rs1868195	A	G	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	108703507	rs16855104	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	108703518	rs2593958	G	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr3	108703548	rs2593959	C	T	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.422;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:64,55:0.46:119
chr3	108703702	rs2593960	A	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	108705715	rs11433147	A	AT	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	108724279	rs2290058	T	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	108725694	rs2044586	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	108725759	rs2044587	C	T	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-1.973;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:48,34:0.41:82
chr3	108725765	rs79823764	C	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-2.314;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr3	108725848	rs5851630	ATTGC	A	4805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.031;QD=18.48;ReadPosRankSum=2.000;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:133,127:0.49:260
chr3	108725862	rs2044589	T	C	5209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=1.906;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:133,144:0.52:277
chr3	108725984	rs2044590	G	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr3	108754146	rs9821261	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr3	108754214	rs3762697	T	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr3	108754238	rs4855576	A	T	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=24.66;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	108754260	rs3762696	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.441;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.104;QD=7.72;ReadPosRankSum=2.174;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:65,55:0.46:120
chr3	108754320	rs11438791	T	TA,TAA	635.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;QD=23.55;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:0,12,15:0.44,0.56:27
chr3	108754346	rs35736028	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.792;QD=7.05;ReadPosRankSum=1.273;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	108754374	.	T	C	30	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=47;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=30;QD=21.5904041824;SC=ATCAAAACAATTGGCAAAGGG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=108754382;WS=108754364;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr3	108776343	rs1031252	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	108782160	rs895738	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	108812154	rs9821382	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr3	108819505	rs72935398	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	108829765	rs6437822	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	108833216	rs74558340	A	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:111,115:0.51:226
chr3	108833429	rs76624072	G	T	57.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	108836698	rs140248562	T	TA	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	108836971	rs114459974	C	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:147,177:0.55:324
chr3	108855774	rs1356071	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	108855801	rs1356072	T	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr3	108867128	rs4855697	A	G	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:208,156:0.43:364
chr3	109019130	rs144859048	C	CA	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	109019168	rs79494928	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	109027215	.	C	CT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.641;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:88,23:0.21:111
chr3	109049128	rs1817522	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.717;QD=1.88;ReadPosRankSum=-2.855;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	109049147	rs376934388	CAAAAAAAAAAAAAAAAAA	C	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.387;QD=29.83;ReadPosRankSum=1.741;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr3	109049180	rs5851663	GA	G	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.387;QD=24.42;ReadPosRankSum=-1.073;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr3	109049720	rs112463757	C	CTAAGGGT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	109050980	rs1163438	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	109056178	.	TA	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.414;QD=1.16;ReadPosRankSum=0.763;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr3	109056278	rs3749235	G	C	4189.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:269,225:0.46:494
chr3	109056363	rs16855561	A	G	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr3	109178707	rs769534	C	G	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=24.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	109178758	rs769533	C	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	110611137	rs1381838	G	A	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr3	110611837	rs72950741	G	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	110791113	rs4682228	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr3	110830746	.	ATG	A	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.87;ReadPosRankSum=1.834;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	110853084	rs77347144	C	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	110866195	.	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.021;QD=0.27;ReadPosRankSum=1.703;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:249,56:0.18:305
chr3	110866437	rs62273799	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	110911127	.	A	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.730;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr3	110911976	rs6804912	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	111297908	rs61733706	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr3	111356083	rs1533270	G	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	111368813	rs3733176	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	111604541	rs1283007	G	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr3	111637904	rs2399399	G	A	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	111638132	rs951660	A	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	111638952	rs6779756	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	111639353	rs937551	G	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	111658486	rs712510	T	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	111659377	rs698358	T	C	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	111677505	rs62277620	T	C	11377.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	111677526	rs11713044	G	A	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	111685328	rs774859	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	111685347	rs67645066	CAT	C	35.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.945;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr3	111685348	rs774858	A	G	1266.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:9,44:0.83:53
chr3	111692693	rs2895388	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr3	111692829	rs774852	C	T	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	111697867	rs2289598	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr3	111705275	rs150902974	G	GTTTGT,GTTTGTTTTGT	2477.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=114;set=Intersection	GT:AF:DP	1/2:0.48,0.52:56
chr3	111705727	rs73232038	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	111709664	rs7637202	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.731;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr3	111710201	rs71773737	AT	A	942.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr3	111710206	rs6795538	T	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.340;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr3	111710682	rs3749308	A	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	111719493	rs774764	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr3	111760771	rs774774	A	G	12165.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.56;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	111760773	rs11929695	C	T	3066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.222;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:190,160:0.46:350
chr3	111761993	rs201866482	TAG	T	2518.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:96,74:0.44:170
chr3	111763085	rs4682350	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	111763278	rs7650559	G	T	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr3	111765834	rs1561911	G	A	12680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=0.736;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,501:1.00:502
chr3	111766215	rs1318554	A	G	9885.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:2,383:0.99:385
chr3	111766559	rs1688304	T	G	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	111769417	rs7625159	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	111775891	rs115010615	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-0.298;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	111776135	rs55971748	T	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	111780576	rs73853300	G	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr3	111780629	rs73853301	CC	TT	7793.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.79;ReadPosRankSum=0.740;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:2,176:0.99:178
chr3	111780741	rs16859132	C	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	111782404	rs116542268	G	A	5491.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:323,293:0.48:616
chr3	111793316	rs191454	G	T	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	111794365	rs1907639	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr3	111799845	rs340151	A	T	9680.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	111805438	rs3833596	G	GT	1999.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr3	111821747	rs16859190	A	G	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:89,71:0.44:160
chr3	111821863	rs192095	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr3	111828384	rs5851818	G	GT	10155.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr3	111828423	rs340167	G	A	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	111828476	rs2120095	A	G	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:97,111:0.53:208
chr3	111831723	rs67780840	T	TA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.768;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	111832120	rs340165	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	111835831	rs79310241	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr3	111838219	rs61174992	T	TAACA	2834.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:99,72:0.42:171
chr3	111851817	rs950528	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr3	111860222	rs1492480	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr3	111870121	rs78621718	A	G	3549.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:137,171:0.56:308
chr3	111885896	rs4682084	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	111887788	rs73853324	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr3	111918215	rs28516377	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-0.329;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr3	111918216	rs13098660	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.19;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	111919448	rs80153532	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr3	111921010	rs9821935	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	111921116	rs9288938	C	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr3	111921225	rs6781844	G	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	111923035	.	TAG	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.46;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr3	111923047	rs4422273	G	A	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	111923123	rs4434123	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	111926894	rs58698902	G	A	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	111936118	rs11921877	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=0.723;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	111936200	rs1388857	C	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-1.735;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	111984970	rs4682098	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	111993716	rs6805112	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	111996726	rs6791182	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	111997504	.	AT	A	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.100;QD=10.99;ReadPosRankSum=1.288;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	112005423	rs7621431	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	112005691	rs79950192	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	112052173	rs9883527	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	112059768	rs1131199	C	G	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-1.236;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:93,75:0.45:168
chr3	112063705	rs3817425	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.23;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	112064263	rs11921546	T	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.49;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	112064263	.	TTGT	ATGC,ATGT	198	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0,2;NR=12,24;PP=198,188;QD=20.9556562385;SC=ATAGCCTTTCTTGTCTACTAT;SbPval=1.0;Source=Platypus;TC=26;TCF=2;TCR=24;TR=12,26;WE=112064274;WS=112064253;set=Platypus	GT:AF:DP	0/1:0.46:26
chr3	112064266	rs60497880	T	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.385;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	112066562	rs1050572	G	A	10328.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr3	112068440	rs60377655	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	112068494	rs150687436	T	TCTATTGCTTTATCA,TCA	2618.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/1:1.00:40
chr3	112068517	rs57404826	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,50:0.42:120
chr3	112068727	rs115952260	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	112080289	rs201856511	ACT	A	1052.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr3	112080398	rs79053962	A	C	4044.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:220,211:0.49:431
chr3	112080546	rs144455411	C	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr3	112190137	rs2931761	G	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	112218319	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.674;QD=3.47;ReadPosRankSum=0.712;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	112253193	rs59973980	CA	C	3925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.262;QD=11.65;ReadPosRankSum=0.817;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:56,281:0.83:337
chr3	112256630	rs2969896	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	112289576	rs11411476	A	AT	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr3	112299732	rs2292442	A	G	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr3	112299924	.	G	A	3041.77	.	AC=1;AF=0.500;AN=2;DP=340;set=Intersection	GT:AD:AF:DP	0/1:179,154:0.46:333
chr3	112301458	rs5851844	C	CCTTAGTAAT	3365.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.29;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	112356830	rs190014911	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr3	112538571	rs35585943	CT	C	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	112546306	rs4682119	C	A	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr3	112556782	.	A	G	1165.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr3	112556904	rs6795521	C	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	112556946	rs6770923	A	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	112560104	rs73225776	C	T	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:241,205:0.46:446
chr3	112564663	rs4682438	G	C	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=3.068;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr3	112564663	.	GTC	CTT	536	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=7;NR=12;PP=536;QD=31.0246249927;SC=GTTTCTCTTGGTCACTTTTGC;SbPval=0.53;Source=Platypus;TC=31;TCF=11;TCR=20;TR=19;WE=112564673;WS=112564653;set=Platypus	GT:AD:AF:DP	1/0:12,19:0.61:31
chr3	112564665	rs4682439	C	T	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.85;ReadPosRankSum=2.226;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:34,35:0.51:69
chr3	112642568	rs9865242	C	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,100:0.46:219
chr3	112647613	rs1466872	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	112647832	rs9826308	A	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:105,77:0.42:182
chr3	112647988	rs9868053	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr3	112648125	rs6438117	G	T	9655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.365;QD=16.76;ReadPosRankSum=-0.572;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:319,257:0.45:576
chr3	112648127	rs4596117	T	G	9655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.187;QD=17.06;ReadPosRankSum=-0.575;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:315,251:0.44:566
chr3	112648222	rs2171509	T	C	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr3	112666615	rs72952145	A	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:98,93:0.49:191
chr3	112666785	rs72952146	A	G	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:193,189:0.49:382
chr3	112719791	rs200301737	CA	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.257;QD=4.12;ReadPosRankSum=-0.846;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr3	112732298	rs374552357	GTTTTTTTTTTGT	G	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	112738318	rs2293560	C	T	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:191,178:0.48:369
chr3	112738625	rs7633507	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr3	112935138	rs4682130	C	G	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	112992225	rs7612497	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr3	112993367	rs13094203	G	A	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:237,237:0.50:474
chr3	112997554	rs775228	A	G	6263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.577;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:395,320:0.45:715
chr3	112998265	rs2649878	A	G	10720.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.79;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	112998265	.	ATCG	GTCA,GTCG	1286	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=13;MMLQ=23;MQ=59.84;NF=30,74;NR=39,90;PP=892,1286;QD=13.702432969;SC=CCATCCCCCCATCGCGGCTGT;SbPval=0.61;Source=Platypus;TC=165;TCF=74;TCR=91;TR=69,164;WE=112998276;WS=112998255;set=Platypus	GT:AF:DP	0/1:0.42:165
chr3	112998268	rs2650100	G	A	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=3.754;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:189,133:0.41:322
chr3	112999560	rs72942485	G	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:195,150:0.43:345
chr3	112999611	rs775229	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr3	112999755	rs6789960	G	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr3	113004155	rs41271355	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr3	113005753	.	T	TA	336.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.070;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=6.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=2.693;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr3	113005754	rs5022662	A	T	886.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-1.033;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:42,44:0.51:86
chr3	113010466	rs2291905	T	C	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr3	113012797	rs810209	G	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr3	113012974	rs775217	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.713;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr3	113013848	rs11398178	A	AT	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.718;QD=13.81;ReadPosRankSum=-0.165;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	113015436	rs808949	G	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr3	113015464	rs3829889	G	A	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr3	113015553	rs808950	A	C	8580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-0.975;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:350,424:0.55:774
chr3	113022870	rs4682484	T	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:159,154:0.49:313
chr3	113022996	rs2270782	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr3	113024018	rs2270785	T	C	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:126,140:0.53:266
chr3	113027214	rs775231	A	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	113045561	rs3732809	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	113049270	rs6768642	T	A	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:121,155:0.56:276
chr3	113164109	rs2054823	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.400;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	113175944	rs5851894	TA	T	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	113176122	rs7637618	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:201,169:0.46:370
chr3	113187136	rs74947574	T	G	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:153,150:0.50:303
chr3	113207758	rs7625841	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,67:0.48:141
chr3	113212041	rs1471884	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr3	113218435	rs79385229	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,53:0.54:99
chr3	113251875	rs9879313	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr3	113252042	rs3732799	C	T	10569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=1129;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.032;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:575,543:0.49:1118
chr3	113285185	.	T	TTG	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.742;QD=7.27;ReadPosRankSum=-0.027;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	113286295	rs28539944	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr3	113286405	rs2292511	C	T	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:128,140:0.52:268
chr3	113299579	rs113876459	C	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:223,176:0.44:399
chr3	113299644	rs28614095	C	T	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr3	113300183	rs2271494	A	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	113300351	rs9863703	T	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,60:0.42:144
chr3	113302425	rs2271493	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	113304171	rs41271363	G	A	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=1.255;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:124,117:0.49:241
chr3	113313947	rs2614193	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr3	113329794	rs150079499	A	C	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:181,177:0.49:358
chr3	113331289	rs9842516	T	G	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr3	113334752	rs2271498	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	113368643	rs10934240	A	T	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:80,89:0.53:169
chr3	113373930	rs930818	A	G	9267.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr3	113376110	rs10531304	TTGCTGC	T,TTGCTGCTGC	4647.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=395;set=Intersection	GT:AF:DP	1/2:0.45,0.41:288
chr3	113377361	rs9813630	A	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr3	113393537	rs114158107	T	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr3	113464881	rs185474511	G	C	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:269,236:0.47:505
chr3	113497547	rs144422977	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	113499458	rs1430944	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	113499823	rs16861331	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr3	113503354	rs2305546	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	113517028	rs200783945	AT	A	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr3	113517319	rs144859721	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr3	113528129	rs141038991	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr3	113557690	rs9990079	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,55:0.53:103
chr3	113557787	rs66781755	AGCC	A	7873.73	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:239,206:0.46:445
chr3	113588445	rs1469559	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr3	113595156	rs2712350	C	G	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	113619872	rs2632244	C	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	113623020	rs57338076	G	A	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	113653466	rs72954664	C	G	81.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	113655096	.	G	GT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.351;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr3	113656833	rs1963015	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.930;QD=9.53;ReadPosRankSum=1.496;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr3	113658605	rs59292926	T	C,G	770.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/2:0.62,0.38:26
chr3	113664364	rs143527577	TAAAGA	T	5134.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:134,134:0.50:268
chr3	113672879	rs72954683	G	A	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:191,134:0.41:325
chr3	113673125	rs11921691	A	G	11476.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:2,436:1.00:438
chr3	113676496	rs7650416	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	113676681	rs60238096	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:93,40:0.30:133
chr3	113679589	rs12629415	C	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:126,92:0.42:218
chr3	113679725	rs3732785	C	T	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	113720624	rs6438178	C	T	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	113737567	rs76418892	C	T	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:217,164:0.43:381
chr3	113785067	rs60433444	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.498;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	113801690	rs58382469	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	113804708	rs34402903	A	G	4765.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:204,233:0.53:437
chr3	113858350	rs2251177	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	113890815	rs6280	C	T	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr3	113955055	rs11316836	GA	G	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.798;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:46,53:0.54:99
chr3	113955164	rs3732782	T	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr3	113955265	rs6438190	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr3	113955320	rs6438191	C	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr3	114832354	rs6787503	G	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:144,114:0.44:258
chr3	114833004	rs74341176	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	115382655	rs28399377	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr3	115395321	rs6292	G	A	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:174,167:0.49:341
chr3	115529068	.	ATC	A	21	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.4995;HP=5;HapScore=2;MGOF=4;MMLQ=15;MQ=58.75;NF=1;NR=1;PP=21;QD=13.0;SC=GGTCTCCCCCATCTCTCTCTC;SbPval=0.61;Source=Platypus;TC=8;TCF=3;TCR=5;TR=2;WE=115529077;WS=115529058;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr3	116163634	rs138580275	GAC	G	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:107,44:0.29:151
chr3	118269774	rs9816586	A	G	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,121:0.51:237
chr3	118269825	rs57227846	GT	G	666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=2.193;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:41,47:0.53:88
chr3	118381320	rs28380350	C	A	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:246,169:0.41:415
chr3	118621523	rs34414843	T	C	5057.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:204,248:0.55:452
chr3	118621664	rs36052974	C	A	4778.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:273,244:0.47:517
chr3	118621833	rs73185803	T	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	118624631	rs6782002	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	118645118	rs9848979	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	118645201	rs16829163	A	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	118649060	rs2903250	G	T	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	118753542	rs73185835	G	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr3	118824042	rs143862519	A	ATTC	4913.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:95,125:0.57:220
chr3	118865801	rs4077931	C	T	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:120,140:0.54:260
chr3	118865970	rs4077930	G	A	3748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-2.838;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:267,195:0.42:462
chr3	118866515	rs9864127	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	118867047	rs9289122	C	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr3	118870025	rs11373158	A	AC	4920.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:117,149:0.56:266
chr3	118878789	rs13077000	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr3	118878869	rs6792705	T	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-0.686;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr3	118905584	rs3796355	C	T	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:168,130:0.44:298
chr3	118908972	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.23;ReadPosRankSum=-1.349;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	118909159	rs9840317	A	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	118909962	rs3796356	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	118909987	rs3796357	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	118913054	rs4284973	A	G	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:170,121:0.42:291
chr3	118917942	rs115585818	C	T	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:121,139:0.53:260
chr3	118930809	rs72655942	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr3	118930884	rs6774	G	A	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:278,224:0.45:502
chr3	118931389	rs6784208	C	T	4323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=1.456;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:257,225:0.47:482
chr3	118935278	.	CACACACACGCACAT	C	165.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.168;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.57;ReadPosRankSum=-0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	118935284	rs68075325	CACGCACAT	C	118.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	118935300	rs73187814	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=-1.335;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	118943060	rs116695744	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,93:0.51:183
chr3	118943185	rs114533988	T	C	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	118945623	rs72655934	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	118945796	rs3764779	G	C	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:147,130:0.47:277
chr3	119013928	rs3732412	A	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr3	119013987	rs10707359	CT	C	530.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;MQRankSum=0.507;QD=16.08;ReadPosRankSum=-1.473;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr3	119014034	rs79691701	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr3	119100023	rs79505114	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.501;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	119112559	rs935616	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr3	119118104	rs4688001	A	G	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	119128628	rs1463139	A	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=-1.259;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	119128634	rs1463138	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.288;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.74;ReadPosRankSum=-0.223;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	119133183	rs3732413	G	A	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:212,175:0.45:387
chr3	119133554	rs61740281	G	A	4537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.860;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:272,233:0.46:505
chr3	119171280	rs1919586	C	G	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:250,184:0.42:434
chr3	119188895	rs6438531	C	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	119196334	rs3732419	G	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr3	119197285	rs4688005	A	G	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:228,183:0.45:411
chr3	119197390	rs76897368	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr3	119198873	rs4688007	G	A	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:266,290:0.52:556
chr3	119204063	rs11382133	C	CA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.107;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	119207991	rs72970358	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	119219573	rs11539377	A	G	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:188,179:0.49:367
chr3	119222267	rs13092762	A	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr3	119236017	rs4461452	G	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr3	119236179	rs60006470	G	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:67,94:0.58:161
chr3	119242443	rs58978800	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr3	119246670	rs74934063	C	T	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:171,122:0.42:293
chr3	119263680	rs2228017	C	T	3168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-1.138;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:213,168:0.44:381
chr3	119276377	rs66604554	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	119305169	rs20569	G	A	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:80,94:0.54:174
chr3	119305379	rs25676	T	A	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:204,200:0.50:404
chr3	119306293	rs142015073	A	AT	1686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.744;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:104,91:0.47:195
chr3	119316828	rs1128293	G	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:99,107:0.52:206
chr3	119325907	rs2251566	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	119327604	rs5852212	GC	G	1614.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr3	119327653	rs1723969	T	C	6014.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:163,156:0.49:319
chr3	119327677	rs114103322	G	A	6797.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:211,197:0.48:408
chr3	119328449	rs3832185	CAGGCTTT	C	2699.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:78,72:0.48:150
chr3	119331874	rs2272270	C	T	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:149,172:0.54:321
chr3	119331892	rs2272269	C	G	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:153,180:0.54:333
chr3	119332010	rs79717615	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr3	119332042	rs2272268	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr3	119334986	rs2247660	G	A	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	119336962	rs2692622	G	A	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr3	119348345	rs3054091	A	ATT,ATTT	4177.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.886;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.223;QD=19.89;ReadPosRankSum=-0.162;SOR=1.318;set=HC	GT:AD:AF:DP	1/2:22,100,88:0.48,0.42:210
chr3	119361250	rs8007	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	119367390	rs2688643	T	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr3	119373301	rs2688630	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=1.834;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	119373315	rs2688629	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=2.253;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	119378872	rs1880040	G	A	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:268,275:0.51:543
chr3	119378977	rs2873788	G	A	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:198,179:0.47:377
chr3	119379186	rs4688023	C	T	6420.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:354,326:0.48:680
chr3	119394168	rs2293235	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	119395870	.	CGG	C	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=0.579;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	119422204	rs7624672	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	119426307	rs9848716	T	C	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr3	119426579	.	G	GAT	66	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=66;QD=37.5;SC=GTATATATGAGATATATATAT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=2;WE=119426587;WS=119426569;set=Platypus	GT:AD:AF:DP	0/1:7,2:0.22:9
chr3	119434527	rs6438544	G	C	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:154,145:0.48:299
chr3	119459682	.	T	TTGTGTGTG	146	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=27;MQ=59.12;NF=0;NR=2;PP=146;QD=74.5;SC=CTGTCAGCATTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=2;WE=119459690;WS=119459672;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr3	119501580	rs3841391	G	GC	825.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr3	119501780	rs2472668	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr3	119501798	rs2461831	T	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr3	119529113	rs3732356	G	T	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	119533773	rs6797879	T	C	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	119533910	rs4058490	T	C	12499.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr3	119534153	rs2276707	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	119595240	rs72548704	T	TA	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.664;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	119666249	rs368955417	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr3	119721171	rs12108149	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr3	119812096	rs139756929	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.314;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	119886548	rs9858566	G	C	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:264,224:0.46:488
chr3	119886776	rs902790	T	A	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:166,161:0.49:327
chr3	119892121	rs13064815	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=1.235;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	119900260	rs1488764	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	119904125	rs902791	A	G	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:229,211:0.48:440
chr3	119904315	rs902792	G	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr3	119905641	rs2319542	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:93,77:0.45:170
chr3	119911667	rs2319543	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr3	120068022	rs6770482	C	G	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:122,117:0.49:239
chr3	120068155	rs10048964	G	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	120114637	rs1700	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-2.455;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	120123953	rs1147701	T	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	120130899	rs1259326	T	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr3	120134720	rs3215378	A	AG	704.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	120134883	rs2272515	T	C	3676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.639;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:189,190:0.50:379
chr3	120169641	rs1147708	T	C	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	120347344	rs146206905	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr3	120351943	rs112229599	T	C	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr3	120352566	rs143066858	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	120371414	rs2551607	G	A	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	120389316	rs2255543	T	A	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	120389431	rs376858353	G	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.824;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr3	120389491	rs17140269	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	120394521	rs17140396	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr3	120413158	rs7612975	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	120428621	rs11720353	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:137,120:0.47:257
chr3	120461247	rs368296734	G	T	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:144,130:0.47:274
chr3	120461288	rs202018618	G	T	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:231,234:0.50:465
chr3	120461576	rs7647895	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	120469325	rs371560373	C	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr3	120500446	rs2229308	T	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.58;ReadPosRankSum=-0.105;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	120768492	rs9877402	A	G	3452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.621;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:141,172:0.55:313
chr3	120840571	rs75367092	T	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.806;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr3	120998905	rs9840658	C	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	121100116	rs35624942	GT	G	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr3	121137976	rs6782025	C	T	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	121138015	rs6782033	C	T	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	121151812	rs3218634	G	C	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:116,127:0.52:243
chr3	121154974	rs1381057	T	C	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:175,137:0.44:312
chr3	121155198	rs2030531	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr3	121186422	rs532411	G	A	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:235,235:0.50:470
chr3	121186543	rs1381058	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr3	121195302	rs10591564	TACAC	T,TACACACAC,TACACAC	2202.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=110;set=Intersection	GT:AF:DP	1/2:0.49,0.45:78
chr3	121202433	rs201304336	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.615;QD=1.37;ReadPosRankSum=0.131;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:83,35:0.30:118
chr3	121208833	rs3218649	G	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:129,65:0.34:194
chr3	121212277	rs11351457	AT	A	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.864;QD=8.93;ReadPosRankSum=-0.653;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:50,67:0.57:117
chr3	121228833	rs3732406	A	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr3	121228960	rs487848	G	A	7511.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:289,371:0.56:660
chr3	121238749	rs702018	G	A	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr3	121241058	rs13059229	C	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr3	121263720	rs702017	C	A	12480.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-1.532;SOR=0.548;set=HC	GT:AD:AF:DP	1/1:1,490:1.00:491
chr3	121265176	rs3806614	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr3	121265522	rs11714774	A	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,76:0.44:171
chr3	121289778	rs80011604	A	T	4806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.249;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:173,233:0.57:406
chr3	121339354	rs7640859	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	121350593	rs1128158	C	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	121350616	rs1128154	G	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	121350655	rs116381221	C	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr3	121350966	rs9869984	C	G	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr3	121351480	rs9815500	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	121352068	rs150795147	C	CT	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=2.115;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	121353254	rs2070179	T	C	10763.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr3	121353328	rs6770842	A	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	121354381	rs7620842	A	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	121356206	.	GCCTGGGA	G	670.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr3	121361646	rs12487377	G	A	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	121361787	rs2070178	G	A	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	121366123	rs9818402	C	T	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	121366377	rs7356043	A	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	121387060	rs56109033	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr3	121388362	rs11363204	AT	A	178.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	121396060	rs78322216	C	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-2.113;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr3	121412892	rs11915822	A	G	6151.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:260,296:0.53:556
chr3	121414217	rs35674179	C	A	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:176,153:0.47:329
chr3	121418765	rs11927625	T	C	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	121433906	rs55964762	T	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	121433926	rs9854052	T	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	121435621	rs9832267	T	C	13171.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	121435624	rs9812411	C	T	13244.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	121437097	rs56286202	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	121447911	rs1919554	A	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	121448675	rs28497949	T	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr3	121449612	rs7643293	G	T	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.194;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:58,64:0.52:122
chr3	121500479	.	TAC	T	189	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=25;MQ=60.85;NF=14;NR=5;PP=189;QD=10.1052631579;SC=GCAATAAATGTACACACACAC;SbPval=0.47;Source=Platypus;TC=30;TCF=23;TCR=7;TR=19;WE=121500488;WS=121500469;set=Platypus	GT:AD:AF:DP	1/0:11,19:0.63:30
chr3	121500510	rs57816005	A	AAT	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr3	121507415	rs4073474	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	121508830	rs6802815	A	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	121514458	rs200573580	T	TA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.339;QD=5.14;ReadPosRankSum=-0.386;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr3	121526204	rs4543051	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.666;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	121527903	rs35072741	C	CT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.642;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr3	121563271	rs11717089	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	121563355	rs9884018	T	C	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:58,101:0.64:159
chr3	121563494	rs77198814	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	121573455	rs12629720	C	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=1.017;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	121604998	.	TTAG	T	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	121613205	rs4603998	G	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	121630328	rs6438687	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr3	121631841	rs1523519	G	A	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:156,159:0.50:315
chr3	121633964	rs2049331	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr3	121634171	rs3215370	A	AT	2376.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:120,129:0.52:249
chr3	121634345	rs369910216	AG	A	526.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr3	121634410	rs9812515	T	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr3	121641528	rs7637569	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr3	121641693	rs2293616	G	A	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:223,212:0.49:435
chr3	121641821	rs2293615	A	G	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:94,132:0.58:226
chr3	121642048	rs3817601	A	T	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:123,128:0.51:251
chr3	121643143	rs3215371	A	AT	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr3	121643163	rs2293611	G	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr3	121643170	rs2257109	A	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,78:0.48:164
chr3	121643303	rs2257115	T	A	5181.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:236,261:0.53:497
chr3	121643337	rs2257119	G	A	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:194,212:0.52:406
chr3	121643372	rs2257120	C	T	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:130,134:0.51:264
chr3	121643427	rs2257123	G	A	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.143;QD=15.07;ReadPosRankSum=-0.927;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr3	121643436	rs2257124	G	A	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.196;QD=16.09;ReadPosRankSum=-0.370;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr3	121643447	rs34567530	A	AT	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr3	121643699	rs2257132	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr3	121643804	rs2257212	C	T	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:144,184:0.56:328
chr3	121643893	rs2257214	T	C	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:86,122:0.59:208
chr3	121646495	rs1882002	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr3	121646641	rs1143670	A	G	3873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.032;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:222,205:0.48:427
chr3	121646759	rs3762819	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr3	121647286	rs1143671	C	T	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.386;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:97,93:0.49:190
chr3	121647467	rs1316301	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-1.814;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	121647782	rs1316397	C	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	121648168	rs1143672	G	A	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:223,245:0.52:468
chr3	121658082	rs874741	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	121659197	rs3817599	G	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr3	121712051	rs2877561	A	C	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr3	121712805	rs3915061	G	C	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr3	121712980	rs3915060	C	T	16009.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:2,622:1.00:624
chr3	121720514	rs35657414	GT	G	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=2.440;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr3	121810427	rs57304749	CT	C	6040.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=7.595;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.208;QD=21.05;ReadPosRankSum=0.611;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:2,285:0.99:287
chr3	121825197	rs2681417	G	A	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:182,198:0.52:380
chr3	121836966	rs10580127	TGA	T	8956.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr3	121837120	rs73858134	G	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	121976253	rs9869985	G	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	122003045	rs2036400	G	C	26074.77	.	AC=2;AF=1.00;AN=2;DB;DP=1018;set=Intersection	GT:AD:AF:DP	1/1:0,1003:1.00:1003
chr3	122003832	rs1801726	G	C	5861.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:397,305:0.43:702
chr3	122004098	rs4677948	A	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr3	122056432	rs17589	C	T	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	122060390	rs34021626	G	T	2990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.592;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:176,157:0.47:333
chr3	122060457	rs114476290	G	A	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.545;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:124,108:0.47:232
chr3	122060486	rs139493213	C	T	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=2.536;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:82,68:0.45:150
chr3	122078677	.	TAAAAAAAAAAA	T	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=0.349;QD=21.10;ReadPosRankSum=-0.285;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr3	122081651	.	C	T	6887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=1.615;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:144,225:0.61:369
chr3	122081659	rs9857709	AA	GC	10452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.137;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=3.190;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:182,258:0.59:440
chr3	122102014	rs186132793	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr3	122128466	rs4306808	G	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr3	122133830	rs3749213	T	G	5837.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:289,301:0.51:590
chr3	122145810	rs4677950	T	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	122168341	rs3749209	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr3	122186188	rs4678193	C	T	10049.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	122215166	rs9289194	A	AACACACACACAC	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	122247606	rs7628052	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr3	122255708	rs2270859	G	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr3	122259606	rs9851180	T	C	4992.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:236,249:0.51:485
chr3	122259640	rs28365795	T	C	6035.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:272,303:0.53:575
chr3	122259745	rs200685111	G	GT	1491.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:99,104:0.51:203
chr3	122259782	rs9868934	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:3,110:0.97:113
chr3	122269380	rs1979853	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	122283503	.	CG	C	1319.73	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr3	122285005	rs12485294	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	122288210	rs2332285	G	A	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:156,141:0.47:297
chr3	122289005	rs55797836	A	G	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:109,153:0.58:262
chr3	122290579	rs2036342	C	T	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr3	122296523	.	G	A	2266.77	.	AC=1;AF=0.500;AN=2;DP=250;set=Intersection	GT:AD:AF:DP	0/1:132,115:0.47:247
chr3	122296647	rs7632426	G	A	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:155,181:0.54:336
chr3	122332100	rs75757385	C	T	4251.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:251,222:0.47:473
chr3	122332145	rs74333849	C	T	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:164,148:0.47:312
chr3	122345980	rs58265504	T	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	122351055	rs34383355	G	A	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr3	122354037	rs1106346	A	G	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:162,192:0.54:354
chr3	122354052	rs1106345	A	G	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:126,154:0.55:280
chr3	122406060	rs17270151	T	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:99,100:0.50:199
chr3	122406077	rs790131	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr3	122437321	rs7645033	T	C	14342.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:2,567:1.00:569
chr3	122437834	rs3821688	A	G	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:162,191:0.54:353
chr3	122471407	rs72280610	TA	T,TAA	748.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.260;SOR=0.592;set=HC	GT:AD:AF:DP	1/2:15,49,32:0.51,0.33:96
chr3	122474305	rs6794019	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	122477795	rs2137210	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	122478032	.	C	CCA	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.000;QD=17.15;ReadPosRankSum=0.492;SOR=1.743;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr3	122512631	rs3806643	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	122525555	rs35035359	G	GT	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-1.115;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr3	122598291	rs2288677	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	122605544	rs9864868	G	A	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:129,158:0.55:287
chr3	122605701	rs6438769	T	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr3	122629589	rs7622250	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-1.495;QD=5.75;ReadPosRankSum=0.210;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	122630323	rs2303982	T	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr3	122630346	rs2303983	T	C	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr3	122631753	rs78490011	C	G	7068.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:333,358:0.52:691
chr3	122631896	rs2276782	A	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr3	122658093	rs55699792	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.27;ReadPosRankSum=1.198;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	122658417	rs3732827	G	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr3	122662435	rs115583988	C	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,65:0.54:120
chr3	122680141	rs13094003	A	G	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:148,122:0.45:270
chr3	122680171	rs4677985	A	G	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	122680240	rs34020905	C	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr3	122694709	rs112503669	T	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.353;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr3	122694820	rs895076	A	T	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:288,249:0.46:537
chr3	122694930	rs9968193	C	T	4062.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:328,223:0.40:551
chr3	122807995	rs836860	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr3	122811042	rs836863	A	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	122811187	.	G	GT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.450;QD=0.62;ReadPosRankSum=1.754;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr3	122821108	rs2717233	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	122821385	rs2241961	T	C	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	122821478	rs2241962	T	A	644.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-0.378;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr3	122821671	rs2241963	AT	GA	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	122834887	rs836839	A	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	122835210	rs836840	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	122835232	rs2278668	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr3	122843020	rs836854	T	C	6688.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:433,347:0.44:780
chr3	122843110	rs861375	G	T	5634.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:317,282:0.47:599
chr3	122864436	rs8739	G	A	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	122943901	rs10543672	GATTA	G	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	123008519	rs4677881	T	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	123014877	rs9881951	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr3	123015094	rs9882534	G	C	9245.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	123018963	rs4482616	A	G	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr3	123021838	rs9877581	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	123021870	rs9844212	G	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr3	123022734	.	AG	A	127.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.221;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.502;QD=9.83;ReadPosRankSum=1.482;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	123022736	.	AAGAG	A	127.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.221;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.502;QD=9.83;ReadPosRankSum=1.179;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	123022740	.	G	GAAGAA	123.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.221;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.502;QD=9.52;ReadPosRankSum=0.761;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	123037043	rs75867257	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.000;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	123037047	rs4327330	A	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	123039478	rs76797233	A	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	123039496	rs3935566	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	123044336	rs112811518	G	GA	5065.73	.	AC=1;AF=0.500;AN=2;DB;DP=397;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:213,170:0.44:383
chr3	123047666	rs9855969	A	G	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:216,169:0.44:385
chr3	123049938	rs6806529	A	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr3	123051345	rs116659644	G	A	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:152,148:0.49:300
chr3	123066555	rs112525497	A	AAAGG	10961.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	123066853	rs58790927	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	123086587	rs62263808	G	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr3	123166997	.	AG	A	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=7.040;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.815;QD=3.63;ReadPosRankSum=-0.638;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	123167249	rs4678027	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	123218454	rs9820088	C	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:196,143:0.42:339
chr3	123221551	rs201126671	G	GA	1608.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr3	123247214	rs1563424	G	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:55,95:0.63:150
chr3	123301024	rs3109649	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr3	123301242	rs820469	C	G	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr3	123303821	rs1271004	G	C	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.492;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:117,99:0.46:216
chr3	123303960	rs820468	C	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	123337414	rs860224	C	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	123338951	.	T	TA	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=3.996;QD=4.60;ReadPosRankSum=0.716;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:124,94:0.43:218
chr3	123338956	rs820457	T	A	4157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.462;QD=18.81;ReadPosRankSum=0.735;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:41,180:0.81:221
chr3	123357037	rs820463	A	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=1.402;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:53,50:0.49:103
chr3	123357062	rs820464	G	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr3	123367884	rs41366751	C	T	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:151,131:0.46:282
chr3	123368013	rs1254392	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	123368043	rs200371896	T	TG	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	123376274	rs9844788	A	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr3	123378319	rs7619172	C	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	123418913	rs865358	G	A	7201.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:507,389:0.43:896
chr3	123451773	rs9833275	G	C	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	123512627	rs28497577	G	T	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:272,161:0.37:433
chr3	123634046	rs2700373	G	A	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	123652476	rs6784695	G	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	123663578	rs7615415	T	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr3	123665766	rs79898922	C	T	3540.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:239,185:0.44:424
chr3	123667524	rs4678073	A	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr3	123671343	rs2682197	T	A	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.179;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:77,73:0.49:150
chr3	123674627	rs2700409	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	123680260	rs2271971	A	G	4355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.178;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:281,223:0.44:504
chr3	123688743	rs12637464	G	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr3	123699145	rs7621884	C	T	9068.77	.	AC=1;AF=0.500;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	0/1:494,454:0.48:948
chr3	123699299	rs7622201	G	A	4605.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:187,213:0.53:400
chr3	123946895	rs2293641	G	A	5236.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:236,262:0.53:498
chr3	123983575	.	T	A	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-1.632;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:152,160:0.51:312
chr3	123988039	rs2272486	T	C	7885.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	124044949	rs2289778	C	T	14541.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr3	124048764	rs2276740	C	T	7860.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:412,378:0.48:790
chr3	124066121	.	CTGTG	C	997	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=26;MMLQ=15;MQ=57.36;NF=2;NR=31;PP=997;QD=30.303030303;SC=AGGTGAGAAGCTGTGTGTGTG;SbPval=0.24;Source=Platypus;TC=71;TCF=2;TCR=69;TR=33;WE=124066134;WS=124066111;set=Platypus	GT:AD:AF:DP	1/0:38,33:0.46:71
chr3	124113929	rs482285	A	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr3	124114236	rs114674371	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr3	124128938	rs647010	A	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr3	124132263	rs2289846	A	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr3	124165217	rs624450	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,59:0.44:135
chr3	124181261	rs535121	C	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.571;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:150,117:0.44:267
chr3	124195987	rs572145	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	124281980	rs2256831	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr3	124303786	rs2250757	G	C	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	124351316	rs1708303	G	A	14030.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,532:1.00:534
chr3	124351424	rs1660038	T	C	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	124352573	rs652046	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	124352868	rs10428097	A	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr3	124355934	rs2276741	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.372;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	124369640	rs11372663	T	TA	6986.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	124369650	rs2291988	T	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr3	124369782	rs35298864	G	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr3	124374259	rs4677938	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	124374405	rs4677939	A	C	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:164,124:0.43:288
chr3	124376676	rs1004840	C	T	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr3	124377165	rs2175740	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	124378386	rs333297	C	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	124379641	rs333291	C	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	124379748	rs333290	G	C	11000.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr3	124379817	rs333289	T	C	11754.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr3	124380793	rs665927	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:5,117:0.96:122
chr3	124380849	rs77102625	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr3	124390796	rs3772782	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr3	124393490	rs9845054	A	C	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:135,181:0.57:316
chr3	124393610	rs333354	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	124396338	rs333349	T	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr3	124398571	rs821365	A	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	124398589	rs821364	A	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	124412634	rs333283	G	T	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.406;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:37,47:0.56:84
chr3	124416698	rs333277	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.15;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	124438329	rs4234221	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr3	124450424	rs7632533	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.293;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr3	124458816	rs694897	C	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr3	124483089	rs2291079	C	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	124485065	rs2291080	T	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.212;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr3	124487849	rs2291082	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	124515308	rs1803825	A	G	23507.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.92;ReadPosRankSum=-0.004;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:3,690:1.00:693
chr3	124515308	.	AAACTCG	GAACTCA,GAACTCG	2887	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=24;MQ=59.86;NF=74,172;NR=54,147;PP=1608,2887;QD=12.9802177724;SC=AGATCTTGCCAAACTCGCTCT;SbPval=0.7;Source=Platypus;TC=320;TCF=173;TCR=147;TR=128,319;WE=124515322;WS=124515298;set=Platypus	GT:AF:DP	0/1:0.40:320
chr3	124515314	rs2291085	G	A	5642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.807;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:391,304:0.44:695
chr3	124515395	rs2291086	G	A	4365.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:256,220:0.46:476
chr3	124605736	rs6438861	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	124627024	rs1127233	T	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,71:0.55:130
chr3	124629222	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=9.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=1.449;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:166,30:0.15:196
chr3	124646705	rs10630030	A	AAAG	8565.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	124653710	rs10934701	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	124692689	rs2270778	C	T	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	124692785	rs2270779	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	124774779	rs200147885	A	AGGGCAGC	357.25	.	AC=1;AF=0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.79;QD=27.48;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	124802677	rs1574340	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	124802881	rs2981483	A	G	17927.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr3	124802888	rs2981482	C	T	17751.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr3	124803032	rs3732502	G	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr3	124803043	rs2981481	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	124837684	rs621383	T	C	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	124839470	rs863642	G	A	20807.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr3	124854425	rs702048	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	124854636	rs2981503	A	T	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:161,133:0.45:294
chr3	124870443	rs73191256	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	124896475	rs143015454	A	AGGTAAAGCCTAT	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	124896505	rs111361612	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr3	124896861	rs545103	C	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	124911681	rs114334075	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr3	124930044	rs673881	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	124930396	rs1969228	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	124930408	rs686088	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	124951171	rs35950048	CT	C	925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=0.355;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:50,83:0.62:133
chr3	124951821	rs1053738	C	T	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:196,158:0.45:354
chr3	124998098	rs10665336	C	CAAA	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.257;QD=9.57;ReadPosRankSum=-1.812;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr3	125179732	rs112803860	C	CATAA	1246.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	125195707	rs6785216	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=-1.111;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	125223456	rs2076724	C	T	9246.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:3,369:0.99:372
chr3	125223593	rs76389695	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr3	125238792	rs56381562	G	A	4434.73	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:210,214:0.50:424
chr3	125250956	rs9867731	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	125257511	rs72979711	A	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:111,77:0.41:188
chr3	125270985	rs10541213	GTATATA	GTA,G	5925.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=158;set=Intersection	GT:AF:DP	1/1:1.00:144
chr3	125279122	rs12487030	A	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.655;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	125297715	rs2922184	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	125297747	rs60145406	AT	A	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	125301711	rs2979382	C	G	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr3	125652411	rs113344123	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr3	125726048	rs2279819	G	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	125726062	rs79696429	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr3	125734272	rs2279820	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr3	125734465	rs9862310	G	A	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:170,189:0.53:359
chr3	125741592	rs3817079	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	125741901	rs2270984	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	125741925	rs2270983	T	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	125775228	rs7613944	T	C	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	125775428	rs6438964	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr3	125786695	rs4308225	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,56:0.43:131
chr3	125786760	rs4308226	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:162,133:0.45:295
chr3	125786853	rs57029085	G	A	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:163,137:0.46:300
chr3	125786879	rs4234270	T	C	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr3	125824382	rs10934744	C	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr3	125826059	rs1127717	T	C	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:125,148:0.54:273
chr3	125831572	rs4646744	GGC	G	4292.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	125831799	rs79298645	C	T	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr3	125834176	rs11716254	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	125836796	rs4646742	C	T	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:172,192:0.53:364
chr3	125843400	rs3217578	A	AG	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	125848911	rs1868125	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	125848945	rs2365002	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	125849031	rs873696	C	T	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	125849238	rs2002287	G	A	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	125850101	rs4646733	CA	TG	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr3	125850169	rs3821451	T	C	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr3	125850193	rs3816366	A	G	6864.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=-1.051;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:2,274:0.99:276
chr3	125850381	rs2305228	A	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	125850434	rs2305227	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr3	125854250	rs113725621	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr3	125854305	rs112318883	C	G	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:242,211:0.47:453
chr3	125854611	rs113107813	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr3	125855599	rs2305229	G	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:94,119:0.56:213
chr3	125855665	rs9282691	T	G	4460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=1.183;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:259,239:0.48:498
chr3	125855726	rs116683776	C	T	7475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-1.832;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:406,383:0.49:789
chr3	125855901	rs74407707	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:87,125:0.59:212
chr3	125856695	rs2305230	C	A	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	125856728	rs34720838	A	G	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.172;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:130,121:0.48:251
chr3	125856916	rs6799991	A	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	125865766	rs2886059	C	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	125874151	rs116403283	C	G	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr3	125874388	rs2276731	C	T	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	125877217	rs7651908	G	A	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:141,144:0.51:285
chr3	125899708	rs11928630	T	A	11112.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr3	126133239	rs6775131	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	126135070	rs143567171	C	CCGCGTCCCCGGCCTCAGGTCCG	909.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.030;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr3	126135365	rs6439010	G	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:128,141:0.52:269
chr3	126137558	rs4679242	C	T	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.28;ReadPosRankSum=1.213;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:80,82:0.51:162
chr3	126137558	.	CGC	TGG	1469	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=59.85;NF=15;NR=26;PP=1469;QD=37.1333628015;SC=AGAAGGACGCCGCCTTGTTCG;SbPval=0.43;Source=Platypus;TC=80;TCF=27;TCR=53;TR=41;WE=126137568;WS=126137548;set=Platypus	GT:AD:AF:DP	0/1:39,41:0.51:80
chr3	126137560	rs114135536	C	G	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=0.685;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:76,81:0.52:157
chr3	126138368	rs140728817	C	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.82;ReadPosRankSum=0.303;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	126138778	rs2271630	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr3	126138889	rs1877967	G	T	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr3	126157464	rs11444454	T	TG	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr3	126158622	rs1799404	A	C	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:150,139:0.48:289
chr3	126160884	rs63288960	CATTA	C	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr3	126168990	rs115941983	A	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	126169091	rs777493	T	C	9226.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	126169230	rs777494	C	T	16739.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr3	126169472	rs777495	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	126180546	rs79209899	C	T	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:268,252:0.48:520
chr3	126180849	rs116147033	G	T	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:129,128:0.50:257
chr3	126184941	rs1799389	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	126185238	rs1687463	C	T	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:85,55:0.39:140
chr3	126185265	rs3830336	A	AT	620.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr3	126189919	rs777499	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr3	126194076	rs812367	T	C	4416.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:259,236:0.48:495
chr3	126194175	rs7624624	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr3	126194357	rs7624748	G	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	126201370	rs75489116	G	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:114,130:0.53:244
chr3	126202257	rs1687477	G	A	6576.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:434,342:0.44:776
chr3	126211186	rs6783680	G	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:118,147:0.55:265
chr3	126211479	rs2307882	C	CCTCT	1961.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr3	126218167	rs1168595	G	A	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:104,160:0.61:264
chr3	126219973	rs1177565	T	C	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	126223002	rs72626368	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr3	126226518	rs9784244	C	T	7137.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	126226694	rs11914807	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr3	126227012	rs73859504	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr3	126227089	rs73859505	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr3	126227185	rs16837531	G	A	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:109,111:0.50:220
chr3	126228398	rs7621815	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,80:0.43:187
chr3	126229473	rs78041432	C	T	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:144,185:0.56:329
chr3	126236311	rs73859511	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr3	126236348	rs1687480	T	C	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	126243419	rs7613347	A	C	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	126260608	rs6766712	G	T	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:243,232:0.49:475
chr3	126261202	rs1056524	G	A	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:183,201:0.52:384
chr3	126261345	rs1056522	G	A	8142.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:294,394:0.57:688
chr3	126268953	rs869464	T	G	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,110:0.57:193
chr3	126270735	rs2291509	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	126270757	rs13071443	G	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	126328101	rs9856833	A	G	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:141,115:0.45:256
chr3	126329910	rs777241	A	G	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	126340553	rs3732534	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr3	126350501	.	T	A	68.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	126352676	rs13322217	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	126365127	rs11453652	C	CT	3173.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	126366333	rs35451927	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.183;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	126373994	rs3108755	A	G	8419.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.448;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=3.104;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=1.171;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:1,328:1.00:329
chr3	126384959	rs184827266	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:110,100:0.48:210
chr3	126633419	rs2303994	C	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	126644974	rs732462	G	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	126724881	rs12489348	G	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	126736681	rs76967585	G	A	11523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.262;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:596,583:0.49:1179
chr3	126737268	rs4679323	C	A	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:224,220:0.50:444
chr3	126739012	rs891762	G	T	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	126739291	rs6439030	T	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	126748692	rs113814980	G	A	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	126751689	rs6439031	G	A	11748.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr3	126880488	rs7625800	T	C	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	126915518	rs143296308	G	C	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:113,166:0.59:279
chr3	126915765	rs116834403	G	A	5039.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:364,266:0.42:630
chr3	127105975	rs35530528	TA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=1.537;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:119,38:0.24:157
chr3	127106182	rs78025639	G	A	17219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DB;DP=1849;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-5.362;QD=9.49;ReadPosRankSum=0.343;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:929,885:0.49:1814
chr3	127323830	rs893293	C	T	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:242,222:0.48:464
chr3	127336934	rs782427	A	G	23064.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr3	127336934	.	ACATGTGCCCG	GCATGTGCCCA,GCATGTGCCTG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.86;NF=52,47;NR=75,63;PP=2944,2944;QD=20;SC=GGTATAGCTCACATGTGCCCG;SbPval=0.63;Source=Platypus;TC=256;TCF=109;TCR=147;TR=127,110;WE=127336952;WS=127336924;set=Platypus	GT:AF:DP	0/1:0.50:256
chr3	127336943	rs200151575	C	T	4469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.023;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:262,229:0.47:491
chr3	127336944	rs202039612	G	A	5407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.947;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:227,257:0.53:484
chr3	127340583	rs6794323	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:140,101:0.42:241
chr3	127379107	rs79467244	A	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr3	127387175	rs57613453	T	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr3	127387388	rs34716022	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:124,123:0.50:247
chr3	127391018	rs813633	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	127391857	rs115820403	A	G	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:193,225:0.54:418
chr3	127396220	rs1658037	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr3	127396505	rs200623784	C	T	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:215,202:0.48:417
chr3	127396700	rs7642670	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:94,102:0.52:196
chr3	127429567	rs1010174	C	G	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr3	127440083	rs13088071	A	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr3	127641968	rs4141499	C	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr3	127770644	rs2878508	C	T	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:229,225:0.50:454
chr3	127771639	rs79698029	T	A	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:176,186:0.51:362
chr3	127774722	rs6802633	AA	GC	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr3	127775788	rs9847934	T	A	433.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-2.125;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr3	127983495	rs2811544	T	C	10969.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr3	128060593	rs34326479	C	T	7383.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:471,380:0.45:851
chr3	128181777	rs2659690	A	G	13878.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:3,530:0.99:533
chr3	128182071	rs13326637	T	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:165,168:0.50:333
chr3	128204951	rs2335052	C	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:75,99:0.57:174
chr3	128205519	rs4577488	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	128205860	rs1573858	G	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	128292062	rs200346912	CT	C	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.567;QD=2.31;ReadPosRankSum=-0.360;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:82,37:0.31:119
chr3	128292213	rs2734046	A	G	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	128292318	rs147519916	ATC	A	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.947;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:571,72:0.11:643
chr3	128348735	rs11453536	G	GA	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	128350684	rs4857914	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr3	128356852	rs1697	C	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.136;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:141,85:0.38:226
chr3	128363332	rs2811497	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.509;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	128363638	rs146448705	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.278;QD=0.40;ReadPosRankSum=1.512;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr3	128580574	rs789248	T	C	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	128580585	rs789247	C	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:141,136:0.49:277
chr3	128612659	rs1680780	G	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr3	128614075	rs11379527	G	GA	348.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr3	128614133	rs1683791	C	T	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	128614185	rs1680778	A	C	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:214,207:0.49:421
chr3	128616325	rs1683804	C	T	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	128616359	rs789213	C	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:146,129:0.47:275
chr3	128617249	rs79398737	T	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	128617412	rs11372022	A	AT	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.075;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr3	128618366	rs371460179	GGT	G	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.000;QD=14.12;ReadPosRankSum=-1.534;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	128622742	rs66521976	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr3	128622760	rs1683776	G	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr3	128624880	rs1683777	T	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	128626952	rs1683786	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr3	128627021	rs1683787	A	G	3320.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:242,177:0.42:419
chr3	128627753	rs876754	T	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:82,51:0.38:133
chr3	128627933	rs876755	C	T	5161.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:288,262:0.48:550
chr3	128629332	rs16852190	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	128629505	rs3830293	C	CTGAT	2977.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:128,77:0.38:205
chr3	128631482	rs200518350	C	T	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:168,130:0.44:298
chr3	128653952	rs883602	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr3	128663991	rs34092381	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:109,132:0.55:241
chr3	128664549	rs13059115	G	T	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:207,183:0.47:390
chr3	128720487	rs1871951	A	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	128722958	rs73210697	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr3	128749751	rs111306084	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr3	128755814	rs3732429	T	C	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr3	128755953	rs3732430	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr3	128755971	rs3732431	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr3	128757560	rs2306529	C	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	128781123	rs115005114	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr3	128853622	rs7646403	C	G	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	128859202	rs10664499	C	CTTAG	12776.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	128864520	rs9842978	C	G	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	128864540	rs9880527	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	128877521	rs4452346	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	128968642	rs62266874	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	128968754	rs73862835	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	128971113	rs4927953	T	C	11782.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=6.892;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=21.704;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=-0.659;SOR=0.141;set=HC	GT:AD:AF:DP	1/1:25,572:0.96:597
chr3	128973663	rs4927914	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	128973747	rs4927913	A	C	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	128973978	rs4927912	A	C	8412.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=41.24;SOR=1.935;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	128973984	rs4927911	C	T	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=48.37;SOR=2.203;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	128974022	rs56978948	C	CT	609.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.364;QD=16.94;ReadPosRankSum=-0.104;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr3	128974811	rs6788909	C	T	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	128976396	rs4927910	T	C	10086.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr3	128976740	rs4927951	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	128979064	rs4927907	G	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	128979108	rs4927906	T	C	8683.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	128979256	rs6802965	C	G	13479.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr3	128982568	rs73862854	G	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	128982583	rs63285861	CCTTCAAG	C	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	128984409	rs78889622	G	A	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:122,112:0.48:234
chr3	128986012	rs146643020	TA	T	1312.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:27,87:0.76:114
chr3	128986715	rs61128088	A	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	128987669	rs73862856	C	T	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	128987730	rs10934875	G	A	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	128987899	rs10934876	T	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	128990998	rs6771809	T	C	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	128993029	.	G	GA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.667;QD=2.33;ReadPosRankSum=-0.839;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr3	128993042	rs78091247	G	A	942.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.826;QD=18.48;ReadPosRankSum=1.555;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr3	128993646	rs73862859	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	129020778	rs6765930	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	129034758	rs6795995	A	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	129100086	rs116891090	T	A	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:179,189:0.51:368
chr3	129113078	rs114524531	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr3	129116249	rs145360530	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr3	129120743	rs6764765	A	G	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	129137025	rs56323212	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr3	129137245	rs116798859	T	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:151,130:0.46:281
chr3	129140489	rs3774788	T	C	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:125,130:0.51:255
chr3	129140738	rs60414131	A	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	129151927	rs140697	G	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:135,105:0.44:240
chr3	129152144	rs140695	T	C	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	129168854	.	C	CT	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=6.809;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.011;QD=2.74;ReadPosRankSum=0.426;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr3	129185641	rs6770233	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	129185661	rs6805886	C	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	129188080	rs2285351	C	T	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr3	129188325	rs7612530	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	129195663	rs2301570	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:66,82:0.55:148
chr3	129197115	rs74719990	C	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr3	129200304	rs184862877	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=53.36;MQRankSum=-0.615;QD=13.11;ReadPosRankSum=-0.542;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	129202644	rs7610149	G	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	129210867	rs2285353	C	A	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.604;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:109,92:0.46:201
chr3	129210977	rs2285354	G	C	20367.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr3	129211100	rs190722421	G	A	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:128,136:0.52:264
chr3	129231433	rs2285355	G	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr3	129233141	rs77184436	G	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:86,99:0.54:185
chr3	129234259	rs2260840	T	C	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.97;QD=24.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	129247526	rs2269736	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr3	129247551	rs7984	A	G	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	129266162	rs2713617	C	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	129279597	rs2713627	C	T	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	129281980	rs2713625	C	T	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	129282137	rs2713624	T	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	129293183	rs2625962	T	C	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	129294244	rs74662777	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=12.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-1.295;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	129303197	rs2811463	T	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	129308096	rs13079843	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	129324193	rs7619850	A	G	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr3	129390129	rs6769406	C	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	129546664	rs72987361	C	T	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr3	129546729	rs784689	T	C	11395.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr3	129694934	rs784705	C	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	129695538	rs784704	C	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	129695930	rs5661	G	A	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:80,92:0.53:172
chr3	129695954	rs5662	T	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	129696041	rs5663	A	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	130095031	rs9835065	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	130095598	rs115250607	A	G	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:320,263:0.45:583
chr3	130098147	rs74387849	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	130098349	rs16845861	G	A	11065.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr3	130098809	rs114174330	A	C	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-2.047;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:84,115:0.58:199
chr3	130103539	rs1453242	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	130103709	rs1453241	G	A	10853.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr3	130104062	rs10212241	T	C	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	130104206	rs10212372	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	130108063	rs57575291	A	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	130109949	rs73000358	C	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr3	130110291	rs144767448	G	T	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:179,171:0.49:350
chr3	130110550	rs11917356	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	130113635	rs10934938	T	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	130114408	rs5852594	AC	A	4257.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=35.48;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	130116684	rs79867908	G	A	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr3	130120509	rs2123567	C	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	130122409	rs5852595	TG	T	6786.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	130128000	rs79394681	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	130135456	rs6439233	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	130135575	rs4688798	A	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	130137866	rs13062453	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.16;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	130142610	rs76376162	T	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	130144984	rs1874599	G	C	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	130158277	rs58510278	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr3	130162395	rs9883988	A	G	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:122,113:0.48:235
chr3	130187817	rs322113	T	C	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr3	130188215	rs115907998	A	T	6285.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:272,317:0.54:589
chr3	130190716	rs73868680	G	A	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	130282407	rs185319822	G	A	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:231,211:0.48:442
chr3	130285883	rs143108657	C	T	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:176,143:0.45:319
chr3	130285929	rs59021909	C	T	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:197,145:0.42:342
chr3	130286886	rs9836961	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr3	130289617	rs10934949	T	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:158,146:0.48:304
chr3	130300650	rs6439249	T	C	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:143,138:0.49:281
chr3	130308702	rs4515022	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	130311931	rs115656707	C	T	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.627;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:201,157:0.44:358
chr3	130313017	rs1467015	T	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	130317287	rs72994346	G	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:154,111:0.42:265
chr3	130317341	rs4336088	G	A	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	130317407	rs115223264	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	130327973	rs56768629	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	130367860	.	CT	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.054;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr3	130368069	rs7614116	A	G	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr3	130383973	rs59386806	G	A	8616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-3.041;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:527,453:0.46:980
chr3	130384139	rs149597952	CT	C	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	130398468	rs12495186	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	130424390	rs75791598	C	A	6124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=1.453;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:190,158:0.45:348
chr3	130424393	rs7652761	C	T	6168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=0.308;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:190,164:0.46:354
chr3	130425653	rs2306688	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.85;ReadPosRankSum=-0.489;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	130454627	rs76687303	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	130569557	rs1316658	T	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	130651096	rs2685178	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	130653386	rs34266677	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.757;QD=1.07;ReadPosRankSum=-1.038;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr3	130659617	rs16835441	C	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr3	130678263	rs2760271	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	130711966	.	G	GT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.883;QD=7.14;ReadPosRankSum=-0.690;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr3	130719948	.	G	GAA	54.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-0.000;QD=9.08;ReadPosRankSum=0.210;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	130734887	rs34645149	G	GT	888.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.663;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.659;QD=16.46;ReadPosRankSum=-0.138;SOR=0.403;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr3	130748484	.	C	T	837.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr3	130828790	rs9850655	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	130852185	rs2674613	T	C	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	130852817	rs113166488	G	A	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:258,254:0.50:512
chr3	130871343	rs6765954	T	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.358;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:73,69:0.49:142
chr3	130947273	rs3737999	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	130947635	rs114580404	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=1.139;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	130962492	rs1469386	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	131100699	rs16836554	G	T	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	131101338	rs16836559	G	A	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:122,144:0.54:266
chr3	131102173	rs16836565	A	T	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:133,121:0.48:254
chr3	131186893	rs56928817	CA	C	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr3	131188377	rs3830301	TAC	T	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.570;QD=10.96;ReadPosRankSum=-1.605;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr3	131254230	rs76599136	T	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr3	131261662	rs10716194	TG	T	8378.73	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr3	131271180	rs994967	T	C	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr3	131271439	rs2251178	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	131283007	rs6439305	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr3	131404572	rs6439314	A	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	131415494	.	G	C	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;ClippingRankSum=0.000;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.056;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:524,174:0.25:698
chr3	131418719	rs75841703	C	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr3	131704571	rs6439325	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	131756241	rs2141570	T	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	131756349	rs1569282	A	G	6910.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:493,375:0.43:868
chr3	131756374	rs149691739	C	G	8607.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:380,427:0.53:807
chr3	131756375	rs1569281	A	G	7254.77	.	AC=1;AF=0.500;AN=2;DB;DP=810;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:425,377:0.47:802
chr3	131756546	rs2178384	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	132047030	rs147157265	A	G	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=2.227;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:288,207:0.42:495
chr3	132050406	rs373257101	GA	G	92.27	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr3	132071419	rs146176137	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	132153333	rs10662251	T	TAG	4108.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:115,107:0.48:222
chr3	132166148	rs377096498	AT	A	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.867;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:179,50:0.22:229
chr3	132173004	rs10653095	A	ATT	673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.530;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr3	132175778	rs6778924	C	T	155.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.31;ReadPosRankSum=-1.000;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	132175778	.	CC	TA	114	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=114;QD=55.8226249541;SC=AAACCAGATACCTTTTATAGG;SbPval=1.0;Source=Platypus;TC=8;TCF=2;TCR=6;TR=3;WE=132175787;WS=132175768;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	132175779	rs6778925	C	A	155.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.47;ReadPosRankSum=-0.566;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	132176257	rs73860736	C	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr3	132179072	rs57140786	GT	G,GTT	1680.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.315;QD=14.74;ReadPosRankSum=-0.135;SOR=0.534;set=HC	GT:AD:AF:DP	1/2:8,48,58:0.42,0.51:114
chr3	132182443	rs11328911	TG	T	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=1.476;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:31,28:0.47:59
chr3	132186187	rs62292896	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,81:0.43:188
chr3	132196816	rs2369796	A	T	2368.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=1.198;SOR=0.632;set=HC	GT:AD:AF:DP	1/1:7,111:0.94:118
chr3	132197995	rs62292950	T	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	132202449	rs62292953	T	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr3	132203074	rs138298974	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	132207368	rs10512859	T	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr3	132215662	rs115349242	A	C	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.027;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	132218196	rs2088712	C	T	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,72:0.58:125
chr3	132218441	rs3834794	A	AT	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	132218623	rs3762672	G	T	11516.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:1,454:1.00:455
chr3	132221076	rs200192843	CTT	C,CT	741.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.482;QD=11.96;ReadPosRankSum=0.038;SOR=0.853;set=HC	GT:AD:AF:DP	1/2:10,23,29:0.37,0.47:62
chr3	132230110	rs7651731	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:76,66:0.46:142
chr3	132233632	rs78151333	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	132244406	rs754993	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	132257199	rs145664063	C	CAA	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr3	132294653	rs148326777	G	A	6180.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:275,317:0.54:592
chr3	132360883	rs821572	C	T	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	132363527	rs1079367	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.82;ReadPosRankSum=-0.366;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	132363752	.	TA	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=4.393;QD=1.62;ReadPosRankSum=-0.065;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:90,29:0.24:119
chr3	132378688	rs79473310	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr3	132378701	rs111508056	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	132394556	rs2305629	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-2.001;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	132400806	rs75316802	C	G	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:225,234:0.51:459
chr3	132401421	rs6792074	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	132413887	rs79047540	C	T	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.267;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr3	132413941	rs10804612	A	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	132418756	rs79113972	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr3	132434022	rs147932449	A	T	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr3	132435823	rs11718115	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	132436901	rs35348816	AT	A	1395.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.17;QD=22.15;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	132438747	rs10590809	CAT	C,CATAT	205.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.90;QD=25.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,4,4:0.50,0.50:8
chr3	133114514	rs143963605	T	TAC	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	133114893	rs1197300	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	133166403	rs7644197	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	133191093	rs899458	A	G	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr3	133305352	rs184920758	T	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	133329943	rs1444601	G	A	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr3	133335787	rs3732574	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	133368362	rs3192149	T	G	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr3	133372473	rs11437609	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=1.189;QD=2.08;ReadPosRankSum=1.750;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr3	133374030	rs7639941	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	133375785	rs2718801	G	A	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	133380130	rs2718805	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	133465283	rs1130459	A	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	133465353	rs8177187	G	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr3	133472337	rs113037188	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	133473430	rs113868497	G	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:118,136:0.54:254
chr3	133474328	rs12769	G	A	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:184,189:0.51:373
chr3	133483696	rs1880669	T	C	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:102,118:0.54:220
chr3	133485133	rs2692696	A	G	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr3	133493705	.	GTT	G,GT	1776.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=3.185;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.439;QD=12.09;ReadPosRankSum=0.212;SOR=1.123;set=HC	GT:AD:AF:DP	1/2:22,29,96:0.20,0.65:147
chr3	133526563	rs113862503	A	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:120,154:0.56:274
chr3	133526655	rs112398870	C	T	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:284,262:0.48:546
chr3	133534289	rs113405105	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr3	133546590	.	ACCCC	A,AC	1040.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.77;QD=34.69;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:0,17,13:0.57,0.43:30
chr3	133553527	rs2280672	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	3242.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:40,82:0.67:122
chr3	133560005	rs201380383	CGCACACACATGCGTGT	C	5646.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:176,149:0.46:325
chr3	133560545	rs1105563	G	A	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:208,165:0.44:373
chr3	133665977	.	C	CA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.18;ReadPosRankSum=0.882;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	133666209	rs34550074	C	T	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:68,97:0.59:165
chr3	133667507	rs34616463	T	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr3	133667646	rs55943046	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr3	133670073	rs6767412	T	C	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:181,200:0.52:381
chr3	133670225	rs6767522	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	133672469	.	G	C	885.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr3	133692497	rs4634113	A	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	133692743	rs4241362	C	T	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	133698280	rs4640563	C	G	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	133901733	rs9829505	A	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	133928579	.	A	G	92.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	133969413	.	A	AGCG	716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=23.89;ReadPosRankSum=0.639;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr3	133969437	.	A	AG	546.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=34.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	134077335	rs113036325	G	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr3	134077470	rs1353776	C	G	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	134080661	rs1077718	A	G	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	134214042	rs62269547	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	134226159	rs6766818	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr3	134266124	rs12637751	A	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr3	134266148	rs12632372	G	C	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	134266321	rs11927068	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr3	134268171	rs142985142	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=-0.980;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	134277195	rs35934324	A	AT	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr3	134280395	rs6777283	T	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	134293619	rs4586863	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.18;QD=28.25;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	134322814	rs2293294	G	C	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	134322844	rs80161977	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:164,130:0.44:294
chr3	134323156	rs4955535	A	G	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	134331874	rs7626611	T	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr3	134369621	rs369325607	G	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr3	134514579	rs9852662	T	C	19241.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr3	134644636	rs635721	G	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	134670524	rs7644369	C	T	8898.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	134697009	rs373709784	A	AC	554.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	134851605	rs56401137	C	T	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:146,161:0.52:307
chr3	134851932	rs73862021	C	T	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:170,181:0.52:351
chr3	134884681	rs60876545	A	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr3	134920306	rs2270881	C	T	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:86,111:0.56:197
chr3	134968440	rs35878491	C	CGTCT	1311.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr3	134968465	rs4243397	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	135720241	rs4678432	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	135720851	rs6779903	G	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:242,135:0.36:377
chr3	135742057	rs113986045	G	GTGTTT	2547.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	135759669	rs3832193	T	TG	4235.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	135798248	rs199806582	AT	A	83.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.182;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	135913665	rs1992952	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	136035737	rs9833162	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr3	136052385	rs7626261	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	136059537	rs503973	G	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	136062724	rs34149860	C	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:94,101:0.52:195
chr3	136088038	rs9860801	G	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr3	136139878	rs9819496	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr3	136195993	rs73863623	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=1.547;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	136196028	rs16843991	T	C	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.868;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr3	136196071	rs1394092	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr3	136310398	.	G	GA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.393;QD=2.21;ReadPosRankSum=-0.107;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr3	136573289	rs9865545	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr3	136573440	rs9827648	A	G	3620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.011;QD=9.84;ReadPosRankSum=-0.417;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:185,183:0.50:368
chr3	136574501	rs1052618	A	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr3	136574578	rs3076229	T	TTAA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	136649463	rs7648817	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	136699133	rs5852860	CT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=9.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.437;SOR=3.086;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	136701295	rs361239	G	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	136728886	rs361235	G	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.65;ReadPosRankSum=-0.834;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	136731202	rs77759778	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	136739387	rs63332362	CT	C	2629.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:113,81:0.42:194
chr3	136739406	rs1385306	C	G	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:123,87:0.41:210
chr3	137483839	.	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-14.323;ClippingRankSum=0.000;DP=1259;ExcessHet=3.0103;FS=198.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.08;ReadPosRankSum=6.489;SOR=9.308;set=HC	GT:AD:AF:DP	0/1:899,316:0.26:1215
chr3	137781923	rs329388	A	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	137783700	rs179282	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr3	137786442	rs442800	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:119,113:0.49:232
chr3	137786696	rs3856632	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	137787047	rs374045	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	137787192	rs446644	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	137787282	rs419075	T	C	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	137787355	rs446847	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	137787935	rs382629	G	A	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	137787963	rs445025	T	G	5430.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.226;MLEAC=2;MLEAF=1.000;MQ=59.65;MQRankSum=-0.137;QD=23.92;ReadPosRankSum=1.128;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,226:1.00:227
chr3	137788123	rs425938	T	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	137788141	rs407009	T	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.365;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	137788162	rs77604935	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-1.044;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	137799291	rs384828	A	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr3	137799498	rs405602	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	137800656	rs2622711	A	G	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-1.444;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:57,45:0.44:102
chr3	137807259	rs2724693	G	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.134;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:55,51:0.48:106
chr3	137816817	rs7629243	A	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr3	137843018	rs1564496	G	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	137843094	rs6794722	C	T	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:149,137:0.48:286
chr3	137843106	rs2170309	T	C	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	137843476	rs2246945	G	T	7925.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	137850003	rs2724691	A	G	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:215,152:0.41:367
chr3	137880695	rs9851548	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr3	137880743	rs2622736	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:187,162:0.46:349
chr3	137881265	rs3732839	T	A	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:183,142:0.44:325
chr3	137882377	rs2622734	G	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	137882752	rs2622733	A	G	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr3	137906485	rs3963416	T	C	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:168,191:0.53:359
chr3	137940935	rs7631817	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr3	137940961	rs7643452	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr3	137942415	rs112669388	C	T	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr3	137947415	rs75871827	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	137958438	rs6778511	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	137960939	rs6783016	T	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	137981393	rs76579989	C	T	2463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.470;QD=9.16;ReadPosRankSum=-1.947;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:139,130:0.48:269
chr3	137981439	.	TA	T	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.760;QD=1.63;ReadPosRankSum=0.983;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:167,66:0.28:233
chr3	137981525	rs111720907	T	TA	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-1.266;QD=9.17;ReadPosRankSum=1.071;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr3	137981618	rs74593220	T	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	137982718	rs939453	T	G	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.492;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:77,53:0.41:130
chr3	137985993	rs74544917	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr3	138009655	rs80294522	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	138020275	rs7637162	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	138020677	rs6801411	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	138023589	rs74335559	T	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr3	138025136	rs3856636	T	G	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	138033181	rs9289556	C	T	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:243,161:0.40:404
chr3	138043128	rs74334205	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	138043535	.	TACAC	T	139.94	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.99;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	138091701	rs1199333	G	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	138092028	rs57184972	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	138116378	rs371472549	GCT	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.065;QD=0.21;ReadPosRankSum=-1.092;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:214,23:0.10:237
chr3	138154114	rs940234	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	138170842	rs75851106	C	G	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:288,267:0.48:555
chr3	138170961	rs811794	C	G	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	138176436	rs35605373	A	G	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr3	138184007	rs115035242	A	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	138184143	rs116694408	T	A	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.703;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:122,107:0.47:229
chr3	138213849	rs10593783	ATTTGT	A	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	138244400	rs9878436	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	138251447	rs10549552	CGGTAT	C	1175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.00;ReadPosRankSum=0.824;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	138256252	rs542010	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	138347957	rs641320	G	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	138347988	rs13043	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,72:0.58:125
chr3	138348081	rs470678	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	138402675	rs3730063	A	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-1.662;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	138417989	rs361080	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	138433568	rs497900	C	T	11154.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr3	138456486	rs374011091	AATAT	A,AATATAT	628.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.41,0.44:34
chr3	138456515	rs3729700	A	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr3	138474832	rs111442356	A	AAAT	1912.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr3	138668233	.	CGT	C	50.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr3	138668400	rs72976938	T	G	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr3	138724757	rs11924188	C	G	6991.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:355,351:0.50:706
chr3	138739617	rs1720230	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	138762707	rs7636403	C	G	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:159,137:0.46:296
chr3	138763343	rs6804898	T	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	139065988	rs1610195	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr3	139066902	rs10755092	A	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	139068008	rs11706615	T	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	139068277	rs10935321	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr3	139071426	rs72982916	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.201;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr3	139075644	rs9878548	C	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	139075938	rs7833	C	T	84.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	139077527	.	G	GA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=4.517;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.094;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:216,44:0.17:260
chr3	139081416	rs57549985	TTA	T	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	139088481	rs11717119	T	C	113.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	139090736	rs7373116	G	A	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:92,113:0.55:205
chr3	139102120	rs7373302	C	A	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:188,190:0.50:378
chr3	139108250	rs3215032	C	CTG	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr3	139173502	rs60978691	C	A	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:181,214:0.54:395
chr3	139173565	rs2233817	A	G	7118.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:372,363:0.49:735
chr3	139180919	rs3046576	ATG	A	3246.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,96:0.44:217
chr3	139236683	rs2071388	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr3	139246382	rs295493	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	139257545	rs34662123	GC	G	1159.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr3	139280328	rs35898558	G	GA	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;MQ=60.25;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr3	139292493	rs61746869	GG	AA	9528.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;JOINED;set=Intersection	GT:AD:AF:DP	0/1:256,249:0.49:505
chr3	139654298	rs74884664	C	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	140122341	rs4683494	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=-0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	140167536	rs2081803	A	G	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	140178279	rs9836487	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:91,95:0.51:186
chr3	140178485	rs7632885	G	A	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:241,208:0.46:449
chr3	140178638	rs10590825	CCCT	C	4150.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,113:0.43:265
chr3	140401693	rs698673	A	G	17112.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr3	140675348	rs75174363	CTT	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.232;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr3	140678384	.	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.110;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr3	140682087	rs74628590	TA	T	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.772;QD=7.47;ReadPosRankSum=0.233;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr3	140784929	rs6771494	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr3	140785175	rs890529	C	A	20522.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:3,781:1.00:784
chr3	140978921	rs3796259	C	T	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	140979184	rs1511378	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	140997320	rs11556022	C	T	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:154,145:0.48:299
chr3	140998214	rs13087169	G	A	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:130,178:0.58:308
chr3	141230886	.	GT	G	81.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.14;ReadPosRankSum=-0.493;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr3	141272597	rs73869661	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	141277933	rs73869667	A	G	139.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr3	141295778	rs3732869	T	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr3	141299397	rs376343712	TAC	T	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.489;QD=6.59;ReadPosRankSum=-0.635;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr3	141299869	rs73871834	C	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr3	141326602	rs295322	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=2.170;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	141327438	rs61750362	A	T	5048.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:142,242:0.63:384
chr3	141327474	rs295323	G	A	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr3	141331222	rs2172471	G	A	928.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.123;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.81;ReadPosRankSum=1.344;SOR=0.386;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr3	141462332	rs72998398	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	141499752	rs72982427	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	141595883	rs7616510	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.63;ReadPosRankSum=-0.674;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	141625999	rs7622417	G	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr3	141626189	rs3838612	C	CGGTA	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	141641015	rs3765155	C	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr3	141644274	rs1131029	G	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	141682484	rs7612323	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	141709083	rs6440055	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	141812759	rs9877817	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr3	141889382	rs79281773	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	141890372	.	CACT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr3	141900367	rs9866012	G	A	16115.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr3	141904474	rs6785098	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	141904977	rs6440065	G	A	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	141905277	rs142154007	GA	G	778.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	141923483	rs144429054	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr3	141923506	rs9830411	C	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	141932356	rs6440072	G	A	12951.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr3	142051147	rs4608715	T	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	142076059	rs3816805	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	142083776	rs3214978	T	TTA	132	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	142094816	rs113527448	G	GCA	597.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr3	142122451	rs2306699	T	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	142123841	rs2306700	C	T	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:212,165:0.44:377
chr3	142145721	rs11391611	G	GA	396.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	142168331	rs1802904	C	T	11425.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr3	142255090	rs73240314	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.23;ReadPosRankSum=-0.389;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	142259706	rs201551475	CA	C	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.235;QD=4.76;ReadPosRankSum=0.775;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:62,55:0.47:117
chr3	142266778	rs76852171	A	T	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr3	142272275	.	AAC	A,AACAC	2096.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=167;set=Intersection	GT:AF:DP	1/2:0.50,0.37:116
chr3	142272314	rs9869842	G	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	142277365	rs36210440	AAAATAAAT	A,AAAAT	5126.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=226;set=Intersection	GT:AF:DP	1/2:0.51,0.48:161
chr3	142277423	.	GATAA	G	3827.73	.	AC=1;AF=0.500;AN=2;DP=637;set=Intersection	GT:AD:AF:DP	0/1:289,194:0.40:483
chr3	142277575	rs2227930	A	T	40104.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=1576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.187;QD=25.72;ReadPosRankSum=0.784;SOR=0.493;set=HC	GT:AD:AF:DP	1/1:4,1555:1.00:1559
chr3	142281612	rs2227928	A	G	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	142388513	rs3836386	AATG	A	233.79	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	142405348	rs11714087	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	142408606	rs6793735	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	142413407	rs6789958	C	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	142417070	rs3773504	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	142503605	rs7621642	G	A	3890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.843;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:253,206:0.45:459
chr3	142512967	rs61326325	T	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	142521224	rs11382953	C	CT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.223;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	142523555	rs4259003	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	142524858	rs1132030	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:74,67:0.48:141
chr3	142537071	rs7772	C	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr3	142548464	rs142180300	TTTC	T	1412.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr3	142548566	rs151152154	T	C	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:137,140:0.51:277
chr3	142567327	rs893883	G	A	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	142606416	rs73864495	C	G	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=0.429;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:104,66:0.39:170
chr3	142607487	rs1457684	C	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	142669479	rs4683440	A	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	142670467	rs2270767	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr3	142681090	rs2276758	T	G	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:181,161:0.47:342
chr3	142681642	rs78494654	G	A	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:182,227:0.56:409
chr3	142720348	rs766360	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	142729583	rs9289653	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	142730774	rs2124541	T	G	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	142730851	rs78584924	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,65:0.52:125
chr3	142739595	rs114428250	T	C	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:167,136:0.45:303
chr3	142743031	rs112510877	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-2.435;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr3	142752293	rs1449869	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	142773738	rs10935479	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	142985100	rs1046706	G	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	142985837	.	A	ATT	760.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=13.58;ReadPosRankSum=2.007;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:11,45:0.80:56
chr3	143185836	rs16853643	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr3	143186135	rs7640246	T	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.617;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	143214114	rs838598	T	C	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	143293102	rs200825186	T	TA	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr3	143297460	rs151096476	T	G	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:182,202:0.53:384
chr3	143412268	rs12488981	T	C	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr3	143513975	rs56969315	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	143530497	rs72993346	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	143530571	rs72993350	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=12.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-0.780;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr3	143567207	rs11714060	A	G	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	143692018	rs2279856	C	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:122,99:0.45:221
chr3	145788467	rs6710	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.68;SOR=1.887;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	145788467	.	TCCAAA	CCCAAA,CCCAAG	535	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=27;MQ=59.95;NF=45,23;NR=10,5;PP=518,535;QD=10.0503856827;SC=CAGTCATTCATCCAAAATAAA;SbPval=0.53;Source=Platypus;TC=55;TCF=45;TCR=10;TR=55,28;WE=145788480;WS=145788457;set=Platypus	GT:AF:DP	0/1:1.00:55
chr3	145788472	rs148862685	A	G	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.264;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:50,60:0.55:110
chr3	145788803	rs2305274	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	145790948	rs7639592	A	G	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	145794599	rs141850775	A	G	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.098;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr3	145794776	rs142623177	CTTTA	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	145795559	rs9874388	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	145803017	rs150981193	C	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr3	145803138	rs1375583	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	145803142	rs1375582	T	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	145804524	rs3804668	C	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	145809750	rs3792341	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	145820684	rs3762691	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr3	145824478	rs9289716	A	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr3	145824504	rs7614409	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr3	145828256	rs3842573	G	GT	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr3	145838895	rs4681297	C	T	12924.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.975;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr3	145841294	rs10663012	A	AAAAC	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=42.96;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	145841854	rs6802384	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	145878880	.	C	A	262.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	145912177	rs9815240	T	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr3	145917927	rs75027949	T	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.166;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	145918763	rs56157360	G	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	145938528	rs3762686	C	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	145938619	rs3762685	T	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr3	145938782	rs9850144	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr3	145938811	rs115332060	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.102;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	145939691	rs3804648	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	145939755	rs3840204	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=7.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.449;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr3	145939776	rs3804647	T	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	146177594	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.887;QD=0.97;ReadPosRankSum=-1.268;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr3	146246288	rs2738909	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	146251430	rs2738905	A	G	1016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.938;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-0.776;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr3	146251433	rs2587024	T	G	1713.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	146254478	rs79005445	C	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:177,120:0.40:297
chr3	146303750	rs342902	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	146307339	rs56763997	T	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr3	146307371	rs343288	G	A	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:86,93:0.52:179
chr3	146307635	rs343289	C	A	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	146311589	rs12107668	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr3	146311937	rs147223969	CA	C	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	146312941	rs6787813	G	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	146313036	rs6787741	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	146318000	rs16858584	T	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.255;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	147111779	rs62273364	T	C	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	147111904	.	C	CCTCT	402.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.108;QD=30.98;ReadPosRankSum=2.273;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	147113586	rs73004638	A	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	148459395	rs5182	C	T	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:189,143:0.43:332
chr3	148459972	rs5185	T	G	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:165,170:0.51:335
chr3	148559706	rs375559471	A	G	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:235,178:0.43:413
chr3	148562470	rs73866671	T	C	5603.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:207,272:0.57:479
chr3	148575156	rs2331407	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr3	148575441	rs1356259	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	148597482	rs1032465	T	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	148597564	rs74621974	C	T	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,78:0.51:152
chr3	148597612	rs12489516	C	T	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr3	148603920	rs61747091	G	A	4944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=2.504;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:232,254:0.52:486
chr3	148711802	.	G	T	534.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	148714841	rs140818906	TTGTG	T	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	148727133	rs4938	G	A	9361.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr3	148750169	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.830;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr3	148756825	rs6764352	G	A	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	148759325	rs2290725	T	C	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	148764090	rs1017489	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	148786108	rs812249	C	T	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	148788941	rs4974388	G	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	148858987	rs10693502	C	CTTTT	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.545;QD=8.49;ReadPosRankSum=1.626;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:61,39:0.39:100
chr3	148863151	rs11718908	A	G	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr3	148863395	rs11715291	T	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr3	148872987	rs6440589	G	A	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.679;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:65,62:0.49:127
chr3	148879878	rs61615092	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-1.086;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	148879883	rs57943258	A	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-1.558;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	148885066	rs57192685	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr3	148885077	rs2681092	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr3	148885779	rs11426099	A	AT	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr3	148885851	rs2681096	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	148890137	rs73019023	A	G	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	148896430	rs16861582	A	G	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:143,127:0.47:270
chr3	148916235	rs701753	T	A	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	149050925	rs1526786	T	C	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	149087404	rs8479	T	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	149087714	rs6776940	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	149093238	rs4771	A	G	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	149216629	rs9799030	C	T	3908.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:270,207:0.43:477
chr3	149220517	rs12636725	C	T	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	149243694	rs9854499	G	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	149257987	rs114457234	C	G	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:170,146:0.46:316
chr3	149258970	rs5853413	CA	C	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	149374574	rs142250733	T	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=2.743;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr3	149374576	rs145173717	T	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=2.624;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr3	149374578	rs151019600	T	A	1305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.06;ReadPosRankSum=1.835;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr3	149374873	rs1055153	G	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr3	149459341	rs7633238	A	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	149459413	rs11549572	C	T	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.174;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:158,119:0.43:277
chr3	149469159	rs41267879	C	G	2878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.813;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:193,156:0.45:349
chr3	149479301	rs954714	C	T	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.129;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:242,193:0.44:435
chr3	149481812	.	AC	A	5784.73	.	AC=1;AF=0.500;AN=2;DP=407;set=Intersection	GT:AD:AF:DP	0/1:201,194:0.49:395
chr3	149485531	rs3821406	A	C	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:212,212:0.50:424
chr3	149510262	rs4681554	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	149564075	rs6440641	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	149613232	rs143625944	ATT	A	1062.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.387;QD=24.71;ReadPosRankSum=-1.520;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr3	149678534	rs6768054	C	T	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:189,158:0.46:347
chr3	149679148	rs61689176	T	TA	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.763;QD=4.25;ReadPosRankSum=-0.394;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:79,49:0.38:128
chr3	149679245	rs1043642	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr3	149686367	rs61268501	AC	A	1498.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=1.262;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:59,98:0.62:157
chr3	149686368	rs68033203	C	A	251.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.253;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:121,36:0.23:157
chr3	149700519	rs7630407	T	C	4979.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:351,268:0.43:619
chr3	149701113	rs34404328	CG	C	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	150127350	rs372515184	G	C	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:188,114:0.38:302
chr3	150129171	rs3840253	A	AT	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr3	150264003	rs1130834	G	C	2196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.250;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:127,114:0.47:241
chr3	150270077	rs12330655	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.714;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	150276391	rs6776252	A	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	150280253	rs4343650	A	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr3	150280445	rs1132979	C	G	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:170,187:0.52:357
chr3	150280506	rs5853483	GA	G	1385.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:71,71:0.50:142
chr3	150377626	rs201133921	C	CA	65.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	150384807	rs6440691	T	G	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	150391810	rs73003074	A	C	4302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=1.541;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:278,237:0.46:515
chr3	150398762	rs78562353	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	150403432	rs375175484	TC	T	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.98;ReadPosRankSum=0.674;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	150420057	.	C	CTT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=13.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.226;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	150420588	rs10663389	G	GTTAAA	13383.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=46.96;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	150420606	rs9824030	T	G	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.417;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=6.814;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.312;QD=3.91;ReadPosRankSum=0.014;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:187,100:0.35:287
chr3	150420608	rs9879627	G	T	1265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.820;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=8.232;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.242;QD=4.32;ReadPosRankSum=1.075;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:197,96:0.33:293
chr3	150420676	rs10663390	A	AGTGT,AGTGTGT	3129.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.969;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=-3.715;QD=41.18;ReadPosRankSum=-1.667;SOR=1.392;set=HC	GT:AD:AF:DP	1/2:5,44,27:0.58,0.36:76
chr3	150420707	.	G	GAGAGAGAGAGAGAGGGAGAGAGAA	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.710;QD=14.56;ReadPosRankSum=2.377;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	150420781	rs71676608	CAG	C,CAGAG	807.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=8.813;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.83;ReadPosRankSum=0.392;SOR=0.055;set=HC	GT:AD:AF:DP	1/2:4,13,20:0.35,0.54:37
chr3	150421419	rs17281287	G	A	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:197,174:0.47:371
chr3	150421527	.	C	CTCCTCCTCCTCCTCCACCTCT	915.74	.	AC=1;AF=0.500;AN=2;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;QD=57.23;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr3	150601401	rs13069091	C	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=2.208;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:50,54:0.52:104
chr3	150601544	rs16862957	T	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:129,95:0.42:224
chr3	150603085	rs7649641	T	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr3	150661842	rs11914988	T	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	150804908	rs7653870	T	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr3	150834015	rs4680158	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	150845574	rs1897296	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr3	150845795	rs7427471	C	G	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.141;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:58,47:0.45:105
chr3	150883600	rs2567322	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:169,69:0.29:238
chr3	150910640	rs1231520	G	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	151012497	rs2242353	T	C	17484.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:1,659:1.00:660
chr3	151045661	rs1491980	G	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	151046308	rs1466684	G	A	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr3	151056598	rs6809699	A	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	151056616	rs6785930	G	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:104,90:0.46:194
chr3	151073033	rs7615865	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	151073937	rs1994730	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=26.55;SOR=1.759;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	151074925	rs3732759	A	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr3	151074941	rs3732760	A	C	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr3	151083067	rs16863337	C	T	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr3	151085578	rs3732764	C	A	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	151085742	rs6782457	G	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	151095745	rs186133529	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	151102790	rs375671077	ACT	A	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.974;QD=0.29;ReadPosRankSum=-0.493;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:247,26:0.10:273
chr3	151112568	rs3732768	G	A	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	151143354	rs10653830	T	TTG	1752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.868;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.646;QD=27.39;ReadPosRankSum=-0.108;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:7,57:0.89:64
chr3	151143447	rs6440742	G	T	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	151154614	rs7624011	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr3	151154666	rs2172250	T	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	151155620	rs6781302	G	A	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr3	151158184	rs937126	A	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	151158265	rs937125	G	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	151158502	rs10663807	T	TAG	2137.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	151165678	rs9871952	T	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	151166422	rs6798252	C	T	11964.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr3	151171439	rs7619322	A	C	7762.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	151171542	rs7621591	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	151283691	rs9842591	C	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	151463421	rs1972977	G	T	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	151542408	rs148745568	AAAAC	A	348.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr3	151542737	rs13098550	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	151542749	rs151253803	CTATT	C	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	151545318	rs2410837	A	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr3	151545321	rs11306821	GT	G	55.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr3	151545323	rs62272918	T	G	64.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.312;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr3	151545601	rs1803155	G	A	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:204,177:0.46:381
chr3	151545879	rs35112108	T	C	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:120,135:0.53:255
chr3	151599393	rs13079080	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	151986434	rs61743371	G	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:156,102:0.40:258
chr3	151987506	rs148863620	TTTC	T	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.282;QD=4.29;ReadPosRankSum=1.732;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:67,42:0.39:109
chr3	152058449	rs13077912	A	G	5704.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:294,285:0.49:579
chr3	152553628	rs1065776	C	T	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:100,131:0.57:231
chr3	152554357	rs701265	A	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:216,191:0.47:407
chr3	152880560	rs61730110	C	T	9760.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:390,478:0.55:868
chr3	153839866	rs12493885	G	C	17967.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr3	153839959	rs59508481	C	T	5525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.413;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:336,271:0.45:607
chr3	153839959	.	CT	TC	2271	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=21;MMLQ=24;MQ=59.92;NF=64;NR=73;PP=2271;QD=16.9669187946;SC=AGGGACGCTCCTCGCAGCGCA;SbPval=0.55;Source=Platypus;TC=298;TCF=140;TCR=158;TR=137;WE=153839968;WS=153839949;set=Platypus	GT:AD:AF:DP	0/1:161,137:0.46:298
chr3	153839960	rs12497267	T	C	20955.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.52;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,607:1.00:607
chr3	153840162	rs13073165	C	T	9000.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:484,447:0.48:931
chr3	153840389	rs13096373	T	C	6077.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:230,288:0.56:518
chr3	153840779	.	CGAA	C	5121.73	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:147,135:0.48:282
chr3	153847582	rs1626280	T	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr3	153912641	rs12330779	C	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr3	153970704	rs2307750	CTT	C	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr3	153970796	rs355752	A	G	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	153972500	rs355749	T	C	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	153994502	rs355787	T	C	2734.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.18;ReadPosRankSum=-0.885;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,79:0.99:80
chr3	153994502	.	TG	CA,CG	220	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=8;MQ=60.0;NF=11,23;NR=8,14;PP=177,220;QD=12.1298881506;SC=CTGACTTACATGTAGATTTAA;SbPval=0.61;Source=Platypus;TC=42;TCF=24;TCR=18;TR=19,37;WE=153994511;WS=153994492;set=Platypus	GT:AF:DP	0/1:0.45:42
chr3	153994503	rs9289943	G	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=1.601;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:42,39:0.48:81
chr3	154007682	rs355758	G	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=26.18;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	154010515	rs149798542	AAC	A	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.188;QD=9.06;ReadPosRankSum=-3.451;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr3	154013275	.	CATCT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr3	154018690	rs3732652	G	A	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:174,144:0.45:318
chr3	154018887	rs9438	G	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr3	154021063	rs355756	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	154024165	rs355754	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	154146922	rs34792862	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,76:0.51:150
chr3	154802742	rs28617565	T	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.84;ReadPosRankSum=-1.742;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	154803016	rs61762323	T	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	154807720	rs3773903	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-1.049;QD=12.67;ReadPosRankSum=-2.301;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:21,37:0.64:58
chr3	154832768	rs79413638	T	G	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:150,200:0.57:350
chr3	154833027	rs144607771	AGGAATGT	A	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	154834379	rs10522735	G	GTA	419.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,23:0.23:100
chr3	154858158	rs28758831	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=1.173;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr3	154866453	rs1436633	T	C	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=2.273;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:108,131:0.55:239
chr3	154866545	rs1436632	A	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr3	154878158	rs35450782	GA	G	788.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	154890206	rs3816803	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	154890512	rs11445808	C	CT	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.073;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:33,41:0.55:74
chr3	154898407	rs701109	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	155093362	rs56250229	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	155093571	.	G	GT	4275.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:138,114:0.45:252
chr3	155093572	.	CTAGAG	C	4275.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:138,111:0.45:249
chr3	155212325	rs3214639	G	GA	3699.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr3	155241593	rs9840061	A	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:69,94:0.58:163
chr3	155241740	rs9840234	A	G	9852.77	.	AC=1;AF=0.500;AN=2;DB;DP=1103;set=Intersection	GT:AD:AF:DP	0/1:570,522:0.48:1092
chr3	155460907	rs74886868	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr3	155461469	rs79519087	A	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:145,124:0.46:269
chr3	155481609	rs7653384	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr3	155485302	rs358733	C	T	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr3	155493498	rs73021523	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-1.476;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr3	155522044	rs63242260	ATAT	A	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr3	155523375	rs10563990	GCGCA	G	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	155524015	rs114877878	G	A	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-2.363;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:133,116:0.47:249
chr3	155551144	rs7617024	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr3	155551203	rs7617114	T	C	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.85;ReadPosRankSum=-0.738;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:50,50:0.50:100
chr3	155551206	rs7649631	C	T	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.536;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr3	155570958	rs185490958	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr3	155571275	rs3804769	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:165,150:0.48:315
chr3	155611557	rs6441026	T	G	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	155628877	rs10936021	T	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr3	155639959	rs3772117	A	G	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-1.482;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chr3	155654432	rs3772113	T	A	320.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	155991348	rs1160221	G	T	15372.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr3	156009925	rs1551066	C	T	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:145,100:0.41:245
chr3	156177598	rs6441072	A	G	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr3	156177675	rs2272112	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	156181653	rs28483959	T	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	156183307	rs112858355	GCCTC	G	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	156183382	rs41267915	A	G	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	156234268	rs4295133	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	156249407	rs2280030	G	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	156266642	rs6809188	C	T	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	156399180	rs3851992	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr3	156413615	rs10631452	C	CTT	877.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=-0.939;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr3	156431750	rs61733487	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	156432029	rs186711669	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:97,87:0.47:184
chr3	156544584	rs344071	C	T	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:209,189:0.47:398
chr3	156570521	rs111501048	T	TA	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=0.249;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr3	156570703	rs414683	A	G	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.575;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr3	156697097	rs6780427	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-1.971;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr3	156877236	rs75624594	A	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:133,135:0.50:268
chr3	156877397	rs149744552	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr3	156978783	.	CCTT	C	458.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	157004323	rs4680353	A	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:98,107:0.52:205
chr3	157031336	rs34067114	TA	T	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	157081324	rs11918974	A	G	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:129,94:0.42:223
chr3	157082082	rs3833585	C	CAA	2154.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	157131788	rs1378796	A	C	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:140,131:0.48:271
chr3	157146307	rs1456099	A	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr3	157154700	rs75123224	A	G	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,84:0.54:156
chr3	157154861	rs2305619	A	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:210,162:0.44:372
chr3	157155314	rs3816527	C	A	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr3	157160491	rs35415718	C	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr3	157188045	rs1456113	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.636;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr3	157188378	rs1011060	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	157296325	.	C	CAT	78	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=78;QD=27.6666666667;SC=CCAAAAAGTACATATATATAT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=3;WE=157296333;WS=157296315;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr3	157817517	rs9833383	A	G	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	157820423	rs4462902	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr3	157820437	rs116270565	T	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr3	157820718	.	A	AAC	950.73	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr3	157841531	rs6789448	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	157849957	rs1609526	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr3	158178684	rs73030514	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	158187189	rs9815348	G	A	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	158254806	rs73154326	A	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-1.755;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr3	158261937	rs9839632	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.503;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	158289035	rs3817373	T	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	158300732	rs2566341	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	158306627	rs1075551	A	G	13728.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr3	158306630	rs2115942	T	G	3848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-1.158;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:214,199:0.48:413
chr3	158308875	rs2566339	T	C	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	158308948	.	CTTT	C,CTT	679.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=4.005;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=2.677;SOR=0.654;set=HC	GT:AD:AF:DP	1/2:6,15,28:0.31,0.57:49
chr3	158310153	rs6771248	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	158318015	rs2639656	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	158320597	rs4875	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	158362413	rs112860155	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr3	158362441	rs1864507	T	C	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	158362526	rs1864506	A	G	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	158362588	rs1864505	C	G	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	158366900	rs2303909	G	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	158369798	rs9810874	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	158372477	rs62286656	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr3	158372502	rs9884039	T	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	158373550	rs73028934	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr3	158384733	rs56321207	C	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	158384920	rs9875895	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	158386697	rs61348783	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.54;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	158386737	rs1492909	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	158386891	rs59718588	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,68:0.50:137
chr3	158387487	rs6441215	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	158388721	rs56093991	C	CAAAGAAA	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	158388780	rs8455	T	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	158388963	rs114051682	A	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	158390395	rs9841	A	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	158399757	rs11436468	A	AT	1409.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:5,68:0.93:73
chr3	158409093	rs145803239	C	CA	3450.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;MQRankSum=0.261;QD=24.47;ReadPosRankSum=1.094;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:1,140:0.99:141
chr3	158409262	rs1047355	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	158422506	rs4680457	G	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	158449965	rs6441223	T	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.386;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr3	158450178	rs6786423	A	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr3	158450216	.	A	G	2141.77	.	AC=1;AF=0.500;AN=2;DP=253;set=Intersection	GT:AD:AF:DP	0/1:130,116:0.47:246
chr3	158450417	rs6441224	T	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	158520483	rs2713736	A	G	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	158522960	rs1381463	C	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	158525165	rs75121091	C	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr3	158526942	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.945;QD=1.19;ReadPosRankSum=-0.300;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr3	158537415	rs146160361	CTTTTT	C	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=1.580;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	158537443	rs3765083	A	G	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	158539294	rs1548092	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	158539486	rs1548093	A	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.213;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	158539961	rs6793618	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:153,104:0.40:257
chr3	158545195	rs6792827	G	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.138;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	158545209	rs61485884	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.669;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	158963535	rs73031430	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr3	158970449	rs7611525	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr3	158970714	rs1020470	T	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	158980292	rs74923751	A	G	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr3	158991724	rs2621285	A	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr3	159482768	rs9832139	G	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:121,118:0.49:239
chr3	159557867	rs79601953	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	159584137	rs148163160	T	TA	2168.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:6,97:0.94:103
chr3	159713215	rs35990253	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:133,101:0.43:234
chr3	159733600	rs589545	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	159733692	rs491966	T	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,66:0.54:123
chr3	159733941	rs186195697	A	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr3	159736893	rs2647930	T	C	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:198,183:0.48:381
chr3	159737076	rs2647931	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:180,157:0.47:337
chr3	159738501	rs57947280	A	T	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr3	159738522	rs58605627	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr3	159744277	rs2936300	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	159744352	rs2279742	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	159744438	rs2914119	C	T	12410.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	159744440	rs2936301	C	T	12410.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr3	159818741	rs111620918	C	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,83:0.44:190
chr3	159818902	rs111583489	A	T	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.356;QD=10.11;ReadPosRankSum=0.110;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:146,154:0.51:300
chr3	159976271	rs16831149	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-0.244;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:44,34:0.44:78
chr3	159976432	rs144483693	GA	G	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.668;QD=11.16;ReadPosRankSum=-0.372;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	159997061	rs6778728	T	A	3685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-2.405;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:195,193:0.50:388
chr3	160021681	rs4680576	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr3	160130110	rs2305407	G	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr3	160135428	rs1451760	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	160137363	rs142795307	C	CT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-1.202;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	160141656	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.298;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr3	160142618	rs11718121	A	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.979;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr3	160142810	.	A	ATGTGTGTGTG	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=1.752;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	160144022	.	AAAAAAAACAGGTTTTT	A	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.810;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr3	160148338	rs73875276	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	160148756	rs7631792	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr3	160220151	.	GT	G	100.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	160223032	rs721022	C	T	97.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.31;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	160226207	.	ACCT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr3	160283126	rs4621370	A	C	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:77,109:0.59:186
chr3	160395093	rs1879797	A	G	1317.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=7.461;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=0.106;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:6,57:0.90:63
chr3	160395483	rs35633732	C	A	13323.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr3	160474540	rs149868982	C	CGTGTGT,CGTGT	1026.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=99;set=Intersection	GT:AF:DP	0/1:0.86:35
chr3	160679422	rs7616249	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	160679744	rs7629001	A	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	160739920	.	AT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.727;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr3	160939732	rs148371722	A	AATCCCAAC	1864.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr3	160939746	.	CTTTTTTTTTTTTTTTT	CTTTT,C	3463.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=11.273;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-1.653;SOR=1.971;set=HC	GT:AD:AF:DP	1/2:8,57,69:0.43,0.51:134
chr3	160939776	rs28711573	T	A	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr3	160942667	rs76866405	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	160942951	rs74571337	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr3	160955879	rs4350933	G	T	902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.09;ReadPosRankSum=-0.374;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr3	160955882	rs11344126	CT	C	838.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.510;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.95;ReadPosRankSum=0.420;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:5,30:0.86:35
chr3	160964271	rs73026976	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr3	160967354	rs4290817	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr3	160970437	rs6789388	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	161064193	rs339101	A	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	161221705	rs3921595	A	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr3	163889384	rs10936412	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	163889439	rs142766625	C	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr3	164059040	rs144012645	C	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr3	164059098	rs73877006	G	T	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:122,117:0.49:239
chr3	164697082	rs73018867	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	164699998	rs41273561	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.57;SOR=1.874;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	164700000	.	C	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.537;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr3	164700290	rs58103898	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	164714532	rs4855271	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	164733721	rs2290738	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr3	164750575	.	C	T	135.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr3	164758630	rs13099130	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	164764719	rs9838509	C	A	5852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.393;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:399,315:0.44:714
chr3	164766807	rs200218470	T	TAA	526.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.850;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr3	164766808	rs67477789	TC	T	526.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.94;ReadPosRankSum=0.274;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	164766816	rs9821196	C	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.18;ReadPosRankSum=-0.378;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	164766835	rs9841237	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr3	164772957	rs9290256	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.452;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr3	164773057	rs9290257	G	A	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:113,115:0.50:228
chr3	164776739	rs115295826	A	G	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.111;QD=8.54;ReadPosRankSum=2.652;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:77,64:0.45:141
chr3	164776913	rs60170840	C	CAT	5436.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:110,142:0.56:252
chr3	164777677	rs9290259	T	G	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.706;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:98,102:0.51:200
chr3	164781368	rs11718901	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	164783165	rs9283633	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.794;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr3	164785196	rs76463353	C	T	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.271;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:102,71:0.41:173
chr3	164785338	rs9865476	G	A	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	164786382	rs9758479	C	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr3	164786396	rs9754967	T	C	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr3	164786413	rs9756068	A	G	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr3	164786629	rs11313475	TA	T	444.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr3	164905648	rs11391347	G	GA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.553;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:126,25:0.17:151
chr3	165495400	rs2686409	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr3	167023738	rs13096767	G	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr3	167034814	rs13068132	T	C	3199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.580;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:219,169:0.44:388
chr3	167035501	rs4580553	G	A	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	167045701	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=0.184;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	167051769	rs11923054	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	167068256	rs4619784	T	A	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.293;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:70,53:0.43:123
chr3	167077691	rs4257551	T	A	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	167090574	rs140060012	G	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	167159831	rs9864094	T	C	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.742;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr3	167159834	rs9844202	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.643;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr3	167159873	rs9942100	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr3	167159979	rs111916732	G	GA	118.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.046;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=-0.517;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	167159980	rs9810473	A	G	100.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.442;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.93;ReadPosRankSum=0.564;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	167164023	rs6768544	G	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.55;ReadPosRankSum=-0.061;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	167164044	rs28544123	T	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	167164049	rs3830596	G	GTA	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	167164187	rs2272138	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr3	167164352	rs2272140	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	167167126	rs61750372	A	G	6446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.193;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:316,328:0.51:644
chr3	167167197	rs78539252	A	T	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:200,166:0.45:366
chr3	167167258	rs111913462	T	C	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.318;QD=16.80;ReadPosRankSum=-1.886;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:57,48:0.46:105
chr3	167167264	rs113507549	A	G	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.298;QD=16.84;ReadPosRankSum=-1.483;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr3	167167286	rs199869898	AT	A	1230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.346;QD=17.84;ReadPosRankSum=-1.293;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr3	167167290	.	A	G	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.323;QD=17.65;ReadPosRankSum=-0.849;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	167167293	rs199822373	TA	T	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=1.165;QD=4.74;ReadPosRankSum=-0.251;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	167218163	rs78968180	C	T	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.15;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	167218165	rs75220465	C	T	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.978;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:56,51:0.48:107
chr3	167254558	rs138019711	TAA	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.376;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	167351418	rs9845725	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	167506937	rs33917740	C	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr3	167506967	rs34582040	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr3	167510472	rs2229697	G	A	2913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.422;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:174,154:0.47:328
chr3	167512622	rs113533056	T	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.134;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr3	167540741	rs11284733	GA	G	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr3	167540938	rs77787972	T	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr3	167727884	rs73037443	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	167728445	rs57405643	G	C	3168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.575;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:186,163:0.47:349
chr3	167728628	rs116181899	A	G	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr3	167728696	rs56801598	G	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr3	167742624	.	G	A	694.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr3	167747022	rs61743591	C	T	3551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.541;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:189,178:0.49:367
chr3	167747169	rs139076938	A	G	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=0.586;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:91,82:0.47:173
chr3	167747177	rs144010173	A	G	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=2.220;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:75,64:0.46:139
chr3	167747659	rs62637708	C	G	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:162,182:0.53:344
chr3	167754573	rs6786410	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	167762678	rs57702503	C	CA	663.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr3	168538993	rs603638	A	G	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	168542454	rs145528794	T	TCA,TCACA	1084.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=68;set=Intersection	GT:AF:DP	1/2:0.41,0.36:59
chr3	168804217	rs9809633	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr3	168810980	rs12634348	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr3	168818560	rs9857376	C	T	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	168819788	rs9290358	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	168825911	rs4955639	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.22;ReadPosRankSum=0.823;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	168840571	rs3851380	A	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	168840607	rs3851381	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	168851934	rs6773653	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	168862965	.	CACACACACACACAGAG	C	98.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=4.609;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=-0.476;QD=2.82;ReadPosRankSum=-0.119;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr3	168862967	rs151149708	CACACACACACAGAG	C	491.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=18.574;MLEAC=1;MLEAF=0.500;MQ=61.28;MQRankSum=0.710;QD=14.46;ReadPosRankSum=0.916;SOR=4.091;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr3	168864275	rs1420477	A	C	5361.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:301,275:0.48:576
chr3	169098861	rs988398	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	169098992	rs7622799	G	A	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:183,218:0.54:401
chr3	169485989	rs35419455	T	A	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:153,158:0.51:311
chr3	169486144	rs9822885	A	G	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.067;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr3	169496843	rs150524698	C	G	2845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.589;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=0.345;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:322,183:0.36:505
chr3	169518455	rs6793295	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr3	169540397	rs1920119	T	C	9316.77	.	AC=1;AF=0.500;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	0/1:468,472:0.50:940
chr3	169550759	rs12486767	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr3	169558025	rs3732451	C	T	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:118,139:0.54:257
chr3	169565896	.	G	C	598.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr3	169566090	rs9290375	A	G	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:113,121:0.52:234
chr3	169569374	rs41273579	A	G	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:163,151:0.48:314
chr3	169587717	rs73879139	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-1.039;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	169639062	rs60401515	A	G	7888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.525;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:318,390:0.55:708
chr3	169639248	rs59993138	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr3	169643757	rs1290671	G	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	169643955	rs1290670	C	T	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:144,144:0.50:288
chr3	169700396	rs11914445	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	169700461	rs11925914	G	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr3	169700474	rs11925852	C	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr3	169801658	rs6444895	G	A	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	169802902	rs150512312	ATG	A	49.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	169820807	rs199563117	TG	T	137.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	169840662	rs140153398	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr3	169846767	rs149473205	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:107,104:0.49:211
chr3	169846888	rs34388560	C	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:109,77:0.41:186
chr3	169854077	rs150597470	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	169868507	rs144302059	G	A	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.227;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:84,75:0.47:159
chr3	169890275	rs143999230	C	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	169894680	rs1386333	G	A	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=1.757;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:52,42:0.45:94
chr3	169896497	rs76070096	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr3	169899272	rs150953892	G	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	169940375	rs149459853	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	169940640	rs191808396	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr3	169980956	rs10592710	CAA	C	387.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.971;MLEAC=2;MLEAF=1.000;MQ=58.19;MQRankSum=0.185;QD=17.62;ReadPosRankSum=1.207;SOR=0.654;set=HC	GT:AD:AF:DP	1/1:6,16:0.73:22
chr3	169981058	rs7627512	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.753;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr3	169985539	.	C	A	57	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=8;HapScore=2;MGOF=187;MMLQ=27;MQ=56.73;NF=1;NR=2;PP=57;QD=30.5904041824;SC=CTTTATTTTTCTTTGGTCCCT;SbPval=0.7;Source=Platypus;TC=6;TCF=2;TCR=4;TR=3;WE=169985547;WS=169985529;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr3	169988364	.	C	CTTT	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.703;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr3	169991161	rs45498193	T	C	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr3	169991224	rs28664891	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr3	169998240	.	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=2.028;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr3	170009601	rs41273585	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	170013527	rs139117001	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.799;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:31,33:0.52:64
chr3	170013846	rs2454763	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=2.340;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	170016948	rs9867081	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-2.225;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:84,42:0.33:126
chr3	170184949	rs73040363	G	A	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:237,264:0.53:501
chr3	170198898	rs3732449	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:165,154:0.48:319
chr3	170204206	rs74330815	T	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr3	170586057	rs3732927	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr3	170611304	rs3215293	GT	G	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr3	170715830	rs5398	G	A	11588.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr3	170716964	rs5407	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:90,93:0.51:183
chr3	170720191	rs75737517	A	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr3	170723276	rs5406	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	170723664	rs2292622	A	G	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-1.081;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr3	170723668	rs2292621	C	T	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.625;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr3	170724883	rs8192675	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	170727658	rs10513689	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr3	170727701	.	GGTGT	G	652	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=47;MMLQ=18;MQ=59.91;NF=7;NR=7;PP=652;QD=46.7857142857;SC=GACAAAGGTAGGTGTGTGTGT;SbPval=0.42;Source=Platypus;TC=35;TCF=15;TCR=20;TR=14;WE=170727715;WS=170727691;set=Platypus	GT:AD:AF:DP	1/0:21,14:0.40:35
chr3	170727702	rs58674412	GT	G	1709.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=-0.209;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:40,48:0.55:88
chr3	170727703	rs3138708	T	G	936.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr3	170727704	.	GTGT	G	1245.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.455;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:46,39:0.46:85
chr3	170727739	rs5402	T	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	170732300	rs5400	G	A	12294.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr3	170732599	rs7356034	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	170736135	rs112230776	C	CT	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	170784256	rs145832204	AT	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.573;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:69,41:0.37:110
chr3	170797535	.	CGT	C	64	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=2;MGOF=52;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=64;QD=36.5;SC=ATTTTATTTACGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=170797544;WS=170797525;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr3	170801912	.	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.312;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=6.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.463;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:50,21:0.30:71
chr3	170824990	rs904617	G	A	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:120,144:0.55:264
chr3	170825905	rs6444960	C	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	170841264	rs6444962	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=-1.068;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	170846697	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.184;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.531;QD=2.62;ReadPosRankSum=-3.026;SOR=2.761;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr3	170846699	.	C	A	88.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.352;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.531;QD=2.54;ReadPosRankSum=-3.531;SOR=3.023;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr3	170846700	.	AGCCTC	A	79.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=11.005;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.522;QD=2.21;ReadPosRankSum=-3.665;SOR=3.176;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr3	170857140	rs7372183	G	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	170857159	rs369149036	GCACGCGCGCACACACACACACA	G	361.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-2.026;QD=8.04;ReadPosRankSum=0.237;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr3	170857167	rs35492114	G	GCA	302.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	170857240	rs6444965	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr3	170858406	rs2292006	T	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr3	170858467	rs67124134	C	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	170893214	rs6777931	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	170912303	rs141160238	T	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:165,156:0.49:321
chr3	170912469	rs6773641	T	A	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:116,122:0.51:238
chr3	170928797	rs6444972	T	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	170946028	rs76246285	T	C	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:155,163:0.51:318
chr3	171065010	rs3082367	G	GA	2682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.832;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:89,193:0.68:282
chr3	171065031	rs1389047	G	C	9797.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	171338237	rs9881788	T	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr3	171395468	rs2124147	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:136,118:0.46:254
chr3	171405384	rs2305547	A	T	75.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	171442635	rs7647840	C	T	7410.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:395,384:0.49:779
chr3	171442750	rs10710862	AG	A	2942.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,90:0.50:180
chr3	171443955	rs4131283	T	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	171844787	rs4894810	A	T	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:221,202:0.48:423
chr3	171965629	rs7625921	A	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr3	171969077	rs7652177	C	G	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr3	171969228	rs35366330	T	C	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:139,157:0.53:296
chr3	172003831	rs67373503	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.568;QD=0.81;ReadPosRankSum=-0.637;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr3	172016753	rs73880143	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr3	172034271	rs9837821	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr3	172034979	.	C	CT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.895;QD=0.80;ReadPosRankSum=-1.139;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:170,39:0.19:209
chr3	172046695	rs201161345	G	GT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.238;QD=4.75;ReadPosRankSum=0.794;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	172046861	rs2270568	T	C	8978.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	172046933	rs6799133	A	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	172050982	rs73035137	G	C	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=2.901;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:59,57:0.49:116
chr3	172052897	rs71300460	G	GT	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.956;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:80,51:0.39:131
chr3	172055273	rs60375808	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	172059121	rs570549	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	172064091	rs583550	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr3	172162829	rs482204	G	A	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=0.328;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	172162837	rs477251	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=2.045;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	172165727	rs572169	C	T	6073.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:358,303:0.46:661
chr3	172166033	rs495225	G	A	5007.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:198,247:0.56:445
chr3	172224303	rs1131532	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:122,47:0.28:169
chr3	172224769	rs111284464	GC	G	2202.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,65:0.43:152
chr3	172224771	rs17848019	T	A	2211.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,65:0.43:152
chr3	172227199	rs3815496	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	172236440	rs231983	T	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	172351926	rs77121984	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	172365619	rs9865941	G	A	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	172428508	rs7629698	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr3	172504364	rs145038110	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.881;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:30,39:0.57:69
chr3	172520818	rs7644191	G	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	172607550	rs9832493	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr3	172634025	rs141570329	T	TTG	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.055;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	172634027	rs28685083	T	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.086;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr3	172766822	rs508508	G	A	3571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-1.532;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:210,186:0.47:396
chr3	172835125	rs1515442	T	C	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:121,220:0.65:341
chr3	173322248	rs3844523	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr3	173322343	rs201240734	C	T	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:197,155:0.44:352
chr3	173323278	rs3853390	A	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:105,55:0.34:160
chr3	173507395	rs4499633	T	C	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	173507744	rs2046722	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:125,118:0.49:243
chr3	173525399	rs114434260	A	G	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.508;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:67,65:0.49:132
chr3	173997153	rs7646919	G	A	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:288,278:0.49:566
chr3	173998201	rs11921706	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr3	174581888	rs6445184	T	C	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:138,169:0.55:307
chr3	174935842	rs11395569	G	GT	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr3	174951756	rs4371530	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	174952096	.	T	G	288.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	175087275	rs9869507	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	175165079	rs6802937	C	T	11324.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr3	175165201	rs2161041	T	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr3	175189406	rs35213579	CT	C	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	175189417	rs79264590	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr3	175189447	rs9290555	G	A	2860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.195;QD=11.82;ReadPosRankSum=-1.358;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:104,138:0.57:242
chr3	175205148	rs7646041	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	175205287	rs16825809	A	G	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.436;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:157,145:0.48:302
chr3	175345143	rs9866564	C	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr3	175345215	rs375170669	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=-1.179;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	175373483	rs376781296	TAAATA	T	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	175473047	rs9826737	T	C	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	175520736	rs12107944	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr3	175520958	rs113131191	T	C	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:185,189:0.51:374
chr3	176750734	rs16827730	G	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr3	176765253	rs1201300	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	176771833	rs138539758	CGTGT	C	2118.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=40.74;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	178525325	rs115542156	A	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,79:0.56:142
chr3	178542331	rs368029162	ATTT	A	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-2.185;QD=6.61;ReadPosRankSum=2.548;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	178542379	rs371329181	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-2.990;QD=3.43;ReadPosRankSum=0.166;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr3	178542417	rs9857119	A	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.35;QD=27.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	178542454	rs11924270	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-3.627;QD=5.28;ReadPosRankSum=-0.078;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr3	178542561	rs11916614	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	178546026	rs9831934	T	C	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	178560581	rs6443583	A	C	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	178785549	rs6772028	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	178928167	.	AGTC	A	1267.73	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr3	178937107	rs200409955	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	178942431	rs2699889	C	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.143;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr3	178957861	.	T	TA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.679;QD=0.77;ReadPosRankSum=1.178;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr3	178968634	rs7645550	C	T	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:118,92:0.44:210
chr3	178976591	rs56400023	T	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	178976777	rs11720871	C	T	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:124,170:0.58:294
chr3	178976821	rs11720935	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr3	178984575	rs7612684	A	G	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.558;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:55,51:0.48:106
chr3	178984639	rs78637016	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.84;ReadPosRankSum=-0.213;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	179050721	rs12491673	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr3	179076879	rs6779649	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	179085791	rs7356002	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	179092989	rs9865666	C	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	179096006	rs35435588	C	CA	312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.585;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr3	179096508	rs7637065	C	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	179103342	rs200984893	C	CT	188.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.092;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr3	179109735	rs2287209	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	179119233	.	AAATAAT	A	232.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	179131652	rs2287212	A	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=0.555;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	179137102	rs9877546	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr3	179137273	rs1362650	A	G	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	179288086	rs12632721	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr3	179291308	rs71907893	CT	C,TT	3898.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.042;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.47;MQRankSum=0.471;QD=19.30;ReadPosRankSum=-2.018;SOR=1.393;set=HC	GT:AD:AF:DP	1/2:4,151,47:0.75,0.23:202
chr3	179291309	rs6443658	T	C	103.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.570;QD=0.44;ReadPosRankSum=-1.036;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:195,42:0.18:237
chr3	179294352	rs2292907	C	A	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.399;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:92,118:0.56:210
chr3	179298584	rs138102554	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.722;QD=5.09;ReadPosRankSum=-0.330;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	179298999	rs1132429	C	T	10201.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	179304255	rs9818068	G	A	1238.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.284;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.43;ReadPosRankSum=-0.919;SOR=2.455;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr3	179304266	rs12635617	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-1.071;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr3	179304514	rs61086485	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=-1.402;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	179304556	rs377584076	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.60;ReadPosRankSum=1.029;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	179305626	rs79000506	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	179305653	rs73883565	A	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=2.702;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	179305654	rs6443659	A	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	179306775	rs10513762	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr3	179322385	rs2339844	A	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr3	179325566	rs113527645	G	GCTGT	7229.73	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:199,188:0.49:387
chr3	179325722	rs58728627	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	179371154	rs2276803	C	T	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:207,161:0.44:368
chr3	179399570	rs13080037	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:81,101:0.55:182
chr3	179408010	rs80290326	T	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-1.638;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:140,96:0.41:236
chr3	179418763	rs143321271	ACTT	A	1891.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr3	179426582	rs11917211	C	T	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:207,189:0.48:396
chr3	179437971	rs9877605	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.993;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr3	179439126	rs182390110	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr3	179448066	rs11309768	AT	A	1089.19	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:9,63:0.88:72
chr3	179448383	rs3213761	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	179458154	rs114841413	A	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:117,111:0.49:228
chr3	179463076	rs58527921	A	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.80;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	179463076	.	AAGGGG	GAGGGA,GAGGGG	648	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=18,28;NR=26,43;PP=648,233;QD=15.9424517014;SC=GGGTAAGGGAAAGGGGGTGGG;SbPval=0.5;Source=Platypus;TC=71;TCF=28;TCR=43;TR=44,71;WE=179463089;WS=179463066;set=Platypus	GT:AF:DP	0/1:0.62:71
chr3	179463081	rs59131484	G	A	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.032;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:36,62:0.63:98
chr3	179469995	rs2239639	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	179472387	rs9879745	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-0.175;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	179472674	rs2287240	C	T	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:185,149:0.45:334
chr3	179481738	.	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.314;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr3	179481971	rs3222346	CTGTG	C,CTG	3500.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.18;ReadPosRankSum=-1.520;SOR=1.040;set=HC	GT:AD:AF:DP	1/2:3,53,60:0.46,0.52:116
chr3	179527459	rs35082123	G	GAA	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.000;QD=16.71;ReadPosRankSum=-1.097;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	179529512	rs76370737	C	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:116,91:0.44:207
chr3	179592053	rs1609981	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	179592240	rs2339914	C	T	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr3	179593072	rs55664665	T	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr3	179593352	rs2302743	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr3	179597979	rs13067789	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr3	179615846	.	GT	G	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.232;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	180321862	rs7633174	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	180322248	rs59520418	CT	C	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=1.308;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr3	180334719	rs11914833	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr3	180337082	rs61733579	G	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.223;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	180362088	rs73051767	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	180366067	rs2338436	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr3	180372433	.	G	GA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=0.154;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	180466073	rs73053861	A	G	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:197,182:0.48:379
chr3	180466130	rs187940993	T	G	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chr3	180466174	rs73053863	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr3	180671369	.	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.81;ReadPosRankSum=2.429;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	180679156	rs7428473	G	A	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.24;QD=21.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	180679327	rs1805617	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr3	180680889	.	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=8.562;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.659;QD=1.48;ReadPosRankSum=-0.347;SOR=0.107;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr3	180688171	.	AATATATATATAT	A,AATATAT	214	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=20;MMLQ=27;MQ=60.0;NF=0,0;NR=6,6;PP=102,214;QD=17.5;SC=AGGGAAGAGAAATATATATAT;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=6,6;WE=180688190;WS=180688161;set=Platypus	GT:AF:DP	0/1:0.46:13
chr3	180688997	rs11368900	C	CA	1349.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	182511590	rs190131438	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	182546017	rs9814205	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	182563088	rs4859249	C	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	182575631	rs661774	G	T	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	182576923	rs645597	T	A	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	182585367	rs377033540	C	CT	31.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.53;ReadPosRankSum=-1.559;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	182587126	rs73050693	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	182590354	rs771156	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	182598863	rs796406	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	182602412	rs7646086	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	182603666	rs11392709	A	AT	420.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	182603693	rs6784314	G	A	755.90	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr3	182614493	rs4859142	T	C	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	182681740	rs4859146	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	182735182	rs6786878	C	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	182858287	rs522235	C	T	13659.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr3	182858461	rs831256	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	182870082	rs682396	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	182870436	rs514636	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	182871962	rs653316	C	T	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	182880629	rs602762	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr3	182913092	rs577136	T	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	182925404	rs6804951	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr3	182937793	rs114432512	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr3	182946002	rs6803121	A	G	3638.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:148,176:0.54:324
chr3	183017713	rs2293202	A	C	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:58,74:0.56:132
chr3	183017965	rs2293203	T	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr3	183018011	rs200964152	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	183027542	rs7639705	T	G	3589.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:225,187:0.45:412
chr3	183028303	rs57067370	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr3	183028450	rs60284418	CA	C	789.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.453;QD=6.81;ReadPosRankSum=1.671;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chr3	183028558	rs1105133	G	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr3	183028600	rs1105132	A	T	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-1.612;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr3	183028656	rs1105131	G	A	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:50,74:0.60:124
chr3	183036166	rs3732593	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	183041201	rs28513326	C	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	183056541	rs6772530	A	C	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:238,299:0.56:537
chr3	183059540	rs5854975	C	CT	1491.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr3	183107300	rs58156029	G	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr3	183107362	rs41358547	C	T	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:104,140:0.57:244
chr3	183107400	rs78550057	C	T	4246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.376;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:230,218:0.49:448
chr3	183145840	rs201065401	AG	A	2189.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr3	183211906	rs1520101	A	G	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr3	183368747	rs16857887	C	T	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	183390030	rs74440691	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	183476685	rs262993	G	A	10623.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr3	183480108	rs3830564	ATGT	A	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	183491340	rs262961	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	183491720	rs262960	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	183493743	rs146705467	CGGA	C	4328.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	183493802	.	CAGG	C	339	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=27;MQ=60.1;NF=2;NR=24;PP=339;QD=13.6923076923;SC=GGCGGCAGCACAGGAGGAGGA;SbPval=0.89;Source=Platypus;TC=56;TCF=8;TCR=48;TR=26;WE=183493812;WS=183493792;set=Platypus	GT:AD:AF:DP	1/0:30,26:0.46:56
chr3	183493991	rs2606220	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	183510782	rs263022	T	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	183521133	rs263042	A	G	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	183524193	rs263034	T	C	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	183524349	rs263033	C	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	183524379	rs263032	A	G	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	183524948	rs263031	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	183528442	rs263024	C	T	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	183535094	rs2582091	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	183535763	rs897604	A	G	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	183536063	rs894000	T	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	183543291	rs263006	G	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	183558402	rs3732581	C	G	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.01;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	183560195	rs13091	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	183560292	rs7652031	A	T	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	183562276	rs3811725	A	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	183604723	rs1829515	A	G	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr3	183604801	rs4420923	G	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	183643628	rs57966530	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.686;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	183660585	rs3749442	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:182,164:0.47:346
chr3	183663833	rs2292998	T	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:89,98:0.52:187
chr3	183669932	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=-0.942;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	183679532	rs6443924	A	G	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr3	183682897	rs1879257	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	183685534	rs939336	A	G	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:233,178:0.43:411
chr3	183696402	rs1132776	A	G	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.236;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:128,93:0.42:221
chr3	183700486	.	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.701;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:185,59:0.24:244
chr3	183706630	rs6443926	A	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr3	183727743	rs13434094	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,52:0.55:94
chr3	183749423	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=33.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=2.176;SOR=5.282;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr3	183749731	rs939334	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	183750907	.	A	ATTTTTT	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-1.353;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr3	183754029	rs6792482	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr3	183754294	rs6443930	G	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	183755822	rs1000952	G	A	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	183756426	rs6799766	T	C	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:2,331:0.99:333
chr3	183756702	rs6789754	G	A	20109.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:2,779:1.00:781
chr3	183756780	rs6765152	A	C	20762.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=26.38;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,787:1.00:787
chr3	183756808	rs6789882	G	A	24264.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=43.64;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,556:1.00:556
chr3	183756813	rs6789682	C	T	23846.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=45.42;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr3	183756836	rs11274156	A	AT	15988.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=47.16;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr3	183756837	rs66883074	G	GTCAGTCCAAATT	15763.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=57.32;SOR=1.985;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	183756933	rs73884848	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	183772514	rs60179621	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:103,117:0.53:220
chr3	183773250	rs56333453	C	T	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr3	183774872	rs11432832	G	GA	5842.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	183776469	rs7617316	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	183777210	rs56244916	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	183815439	rs6765267	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	183818416	rs7627615	G	A	11570.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr3	183819155	rs7432211	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr3	183822145	rs13322315	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr3	183823576	rs4912524	T	C	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr3	183856548	rs112949891	C	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.853;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.495;QD=9.26;ReadPosRankSum=2.114;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr3	183856548	.	CA	TG	224	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=26;MMLQ=27;MQ=59.78;NF=11;NR=5;PP=224;QD=17.3417421789;SC=CTCAGCCTCCCAGGTTCAAGG;SbPval=0.8;Source=Platypus;TC=35;TCF=21;TCR=14;TR=16;WE=183856557;WS=183856543;set=Platypus	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	183856549	rs6787322	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=32.93;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	183858005	rs113509398	T	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr3	183858031	rs28584345	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr3	183861750	rs843357	A	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.968;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	183884895	rs1709638	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr3	183897845	rs2231218	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	183899832	rs8478	C	T	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:169,143:0.46:312
chr3	183900729	rs843365	T	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr3	183900836	rs843364	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	183903935	rs16833781	C	CG	1790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=24.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.895;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:77,72:0.48:149
chr3	183904232	rs1709624	T	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	183906515	rs843345	T	C	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:101,117:0.54:218
chr3	183907032	rs843344	G	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,89:0.56:160
chr3	183910877	rs11924720	A	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,83:0.60:138
chr3	183975365	rs7633387	C	T	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr3	183994536	rs843371	A	G	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr3	183995341	rs1001817	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	183995854	rs2272471	G	A	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	183996068	rs3752904	C	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	183996213	rs843372	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	183996484	rs140658066	CTTTCTTCT	C	1446.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=42.55;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	183996511	rs1387976	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	184003194	rs1687230	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	184010048	rs3914188	G	C	10904.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr3	184016991	rs2272475	TT	GC	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	184020100	rs71185698	C	CA	369.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	184020905	rs2272473	A	G	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr3	184021626	rs60496486	C	T	2185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=1.879;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:46,56:0.55:102
chr3	184021626	.	CCA	TCC	1487	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=15;NR=26;PP=1487;QD=37.5723871918;SC=TGAGGTCTGCCCAGTTTTTAA;SbPval=0.69;Source=Platypus;TC=62;TCF=25;TCR=37;TR=41;WE=184021636;WS=184021616;set=Platypus	GT:AD:AF:DP	0/1:21,41:0.66:62
chr3	184021628	rs9883929	A	C	2185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=1.662;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:45,57:0.56:102
chr3	184037533	rs13319149	A	G	10661.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr3	184039666	rs2178403	A	G	13533.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr3	184045799	rs939317	A	G	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	184046355	rs1879244	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	184056101	rs1881973	G	C	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	184070675	rs3749223	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	184071019	rs11920716	T	C	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:310,224:0.42:534
chr3	184071063	rs9820367	G	C	9795.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr3	184075047	rs2228291	A	G	14374.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr3	184090266	rs6141	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	184091149	rs6142	G	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	184106217	rs1881972	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	184280169	rs115131679	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.799;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr3	184289152	rs13069661	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:142,113:0.44:255
chr3	184428903	rs9872799	T	G	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:203,192:0.49:395
chr3	184429133	rs10656187	A	ATCC	5210.73	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:160,139:0.46:299
chr3	184542693	rs71298576	A	AT	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.332;QD=5.23;ReadPosRankSum=-2.502;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:53,59:0.53:112
chr3	184550501	rs9830734	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	184560969	rs16859344	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	184561140	rs11384502	G	GA	648.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.17;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	184567039	rs2305240	C	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	184573555	rs6443999	C	T	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	184577917	rs7340698	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	184580917	rs3733165	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	184588420	rs2305239	A	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	184642587	.	AT	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=6.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.162;SOR=1.811;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr3	184647413	rs4643688	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	184654166	rs6444004	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	184658058	rs142586532	T	TTATA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	184675095	rs3732934	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	184675147	rs3832240	CTTTTA	C	5291.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	184675359	rs4501092	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	184684313	rs4470487	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	184742256	rs2377256	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	184766148	rs3821748	A	G	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr3	184766186	rs3821749	A	C	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	184766249	rs6779564	TC	CT	11180.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	184766392	rs3821751	G	A	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	184769911	rs2271257	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	184922506	rs149115164	A	C	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:99,85:0.46:184
chr3	184935807	rs35531967	A	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	184966259	rs78790730	T	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr3	184971888	.	AGAG	A	1456.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr3	185046909	rs34308085	AT	A	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr3	185046975	rs9863304	T	C	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr3	185155430	rs113427759	C	CT	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	185212593	rs6798873	T	C	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	185229464	rs61730237	T	C	2126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=1.894;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:109,104:0.49:213
chr3	185229526	rs114080512	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr3	185232169	rs1837882	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr3	185414552	rs56392101	G	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,73:0.55:133
chr3	185434443	rs77587335	G	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:85,101:0.54:186
chr3	185635685	rs16860328	A	G	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:63,81:0.56:144
chr3	185655454	rs1862904	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr3	185769792	rs113018231	G	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr3	185797811	rs78506201	G	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr3	185823772	rs75694702	A	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.605;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-1.409;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr3	185879296	rs13073156	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	185879589	rs77514605	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	185928435	rs114334194	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.527;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	185960192	rs6799929	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	185960414	rs12489063	G	A	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:139,126:0.48:265
chr3	185982955	rs3815620	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr3	185982972	rs3815619	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr3	185990096	rs2193587	C	T	7340.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr3	185997540	rs13319664	G	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.332;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr3	186002389	rs60759155	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr3	186006566	rs710443	T	C	15459.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr3	186006618	rs1004588	G	C	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:191,190:0.50:381
chr3	186015283	rs3819860	A	G	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	186015303	rs3819859	A	G	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	186015315	rs3819858	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	186015438	rs3819857	C	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	186276393	rs9854418	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr3	186287777	rs2889755	T	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	186287980	rs12330397	T	C	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:93,71:0.43:164
chr3	186288565	rs3806714	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	186288810	rs3733160	G	A	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:118,130:0.52:248
chr3	186290127	.	CATTT	C	442	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=2;MGOF=30;MMLQ=27;MQ=59.21;NF=0;NR=10;PP=442;QD=45.3;SC=TTTCAGCTCACATTTATTTAT;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=10;WE=186290138;WS=186290117;set=Platypus	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	186290143	rs374076917	TA	T	886.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=28.60;ReadPosRankSum=0.158;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr3	186290145	rs368298566	TTTA	T	886.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=28.60;ReadPosRankSum=0.249;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr3	186290155	rs2010555	G	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.000;QD=30.16;ReadPosRankSum=0.230;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr3	186293588	rs2280391	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr3	186293820	rs2280390	T	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:76,43:0.36:119
chr3	186295417	rs60278421	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.198;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	186299107	rs11921733	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	186299905	rs6784026	T	C	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:127,140:0.52:267
chr3	186300683	rs9851299	G	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.649;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	186301703	rs8147	A	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr3	186301840	rs13326516	T	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr3	186302391	rs140269415	A	ATTGTGTGTGTGTGT,ATTGTGTGTGTGTGTGTGTGT	3072.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=67.24;QD=71.46;SOR=1.382;set=HC	GT:AD:AF:DP	1/2:0,26,17:0.60,0.40:43
chr3	186330969	rs4831	C	G	8619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=5.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.019;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:492,444:0.47:936
chr3	186337713	rs4917	T	C	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.621;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:140,173:0.55:313
chr3	186338382	rs4918	G	C	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:134,192:0.59:326
chr3	186338425	rs1071592	A	C	16243.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr3	186358297	rs112267492	C	G	6194.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:324,313:0.49:637
chr3	186358768	rs66965282	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	186360409	rs3733159	T	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	186364046	rs6785067	G	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:77,93:0.55:170
chr3	186370333	rs1131364	G	T	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	186386664	rs5855108	T	TA	81.74	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr3	186389559	rs10770	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr3	186390627	rs9898	C	T	7900.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	186393091	rs201939393	T	A,TGAGA	1294.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.590;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.94;MQRankSum=1.947;QD=30.83;ReadPosRankSum=1.736;SOR=0.738;set=HC	GT:AD:AF:DP	1/2:1,20,21:0.48,0.50:42
chr3	186393093	rs34359202	T	A	1568.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.445;MLEAC=2;MLEAF=1.000;MQ=62.04;MQRankSum=2.033;QD=37.35;ReadPosRankSum=1.739;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr3	186393095	rs2378122	T	A	1568.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.445;MLEAC=2;MLEAF=1.000;MQ=62.10;MQRankSum=2.033;QD=37.35;ReadPosRankSum=1.739;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr3	186393097	rs7428891	T	A	1621.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.16;QD=38.61;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	186395113	rs2228243	A	G	9070.77	.	AC=1;AF=0.500;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	0/1:529,469:0.47:998
chr3	186395180	rs7629680	T	C	42733.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=1695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=1.785;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:2,1648:1.00:1650
chr3	186395436	rs1042445	C	T	10621.77	.	AC=1;AF=0.500;AN=2;DB;DP=1049;set=Intersection	GT:AD:AF:DP	0/1:504,513:0.50:1017
chr3	186395572	rs1042464	A	T	12281.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr3	186435370	rs1050274	G	A	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:167,185:0.53:352
chr3	186440098	rs5029998	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr3	186442833	rs1656921	G	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr3	186443018	rs1656922	T	C	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:151,178:0.54:329
chr3	186457002	rs370561639	A	G	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:195,175:0.47:370
chr3	186459927	rs710446	T	C	6885.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:243,330:0.58:573
chr3	186501502	rs266720	C	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr3	186502957	.	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.940;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:71,11:0.13:82
chr3	186504148	rs266718	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	186505745	rs56403627	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr3	186509258	.	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.852;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr3	186509517	rs187868	G	A	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:345,269:0.44:614
chr3	186519136	rs1648703	A	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=0.000;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	186519141	rs1656941	A	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.85;ReadPosRankSum=0.691;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	186522293	rs113205972	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.260;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	186522633	rs710450	A	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	186791795	rs9821439	A	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	186791817	rs2268526	A	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr3	186793242	rs2239612	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	186793675	rs116467209	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	186917586	rs57195580	C	T	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:172,178:0.51:350
chr3	186917751	rs6764714	C	G	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:250,217:0.46:467
chr3	186947410	rs850318	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	186954129	rs200791230	T	G	5522.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:311,277:0.47:588
chr3	186954285	rs710452	A	G	24570.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	1/1:0,934:1.00:934
chr3	186954324	rs3774268	G	A	8120.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:392,398:0.50:790
chr3	186961478	rs710460	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	186965268	rs3774275	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr3	186967942	rs2302818	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr3	187003495	rs698105	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	187088612	rs33927333	C	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:120,98:0.45:218
chr3	187416253	rs1523468	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr3	187416634	rs1973791	C	A	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:97,104:0.52:201
chr3	187416719	rs11707167	T	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:131,123:0.48:254
chr3	187419661	rs113681515	G	GCCTGCC	2328.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr3	187420445	rs4389470	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr3	187443241	rs112603207	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr3	187443314	rs61732778	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr3	187446059	rs77754772	C	T	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr3	187450067	rs77299262	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.664;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	187450128	rs4417855	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr3	187450354	rs76287110	T	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr3	187451609	rs1880101	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr3	187898092	rs16863078	T	G	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:218,191:0.47:409
chr3	188202550	rs2067078	A	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr3	188202582	rs1559814	G	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	188242669	rs200398269	TTCCTTCCTTCCGTCCG	T	200.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.501;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.170;QD=7.17;ReadPosRankSum=0.236;SOR=2.007;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr3	188242673	.	TTCCTTCCGTCCG	T	161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.830;QD=5.39;ReadPosRankSum=1.745;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	188242697	rs369579197	T	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.809;QD=5.51;ReadPosRankSum=2.047;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	188242701	rs138209867	T	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=6.838;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.373;QD=19.28;ReadPosRankSum=3.189;SOR=2.804;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr3	188242705	rs144299808	T	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.505;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.120;QD=7.79;ReadPosRankSum=0.644;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr3	188327555	rs7645635	T	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:99,102:0.51:201
chr3	188406449	rs75477693	T	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.589;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	188478197	.	G	GGTGTGTGTGT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=-0.000;DP=57;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.81;ReadPosRankSum=-0.799;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	188478227	rs9844848	T	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.053;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	188478235	rs9844854	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	188584186	rs1877547	G	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:126,142:0.53:268
chr3	188590358	rs4687001	C	T	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr3	188590446	rs1136644	A	G	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:237,185:0.44:422
chr3	188933213	rs3821734	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr3	188937307	rs5855244	G	GA	215.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.876;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	189033292	rs6773831	C	G	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	189038648	rs1055152	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	189349247	rs28673064	A	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,103:0.44:232
chr3	189507518	rs34201045	C	CAG	1855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=8.841;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.534;QD=10.37;ReadPosRankSum=-0.652;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:125,54:0.30:179
chr3	189585852	rs7653848	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr3	189587091	rs6789961	A	G	4546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.245;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:239,234:0.49:473
chr3	189587274	rs6790167	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	189590824	rs9840359	G	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	189604149	rs1554131	T	G	9558.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr3	189604160	rs1345186	T	C	11100.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr3	189625273	rs114065678	G	C	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:121,93:0.43:214
chr3	189688568	.	ACAT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=0.637;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr3	189688573	.	C	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.637;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr3	189689904	rs710543	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	189690561	rs6444410	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr3	189690816	rs71674435	G	GA	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.187;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:38,38:0.50:76
chr3	189690861	rs710545	T	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	189691499	rs1815171	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	189691549	rs148283807	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr3	189692565	rs1985690	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:98,81:0.45:179
chr3	189700716	rs74497787	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=2.665;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	189702395	rs11311050	TA	T	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr3	189705268	rs11354217	TA	T	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.825;QD=1.29;ReadPosRankSum=0.166;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr3	189705442	rs34558237	T	C	5625.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:270,289:0.52:559
chr3	189712122	rs9871856	C	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.260;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr3	189713100	rs34128856	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:100,97:0.49:197
chr3	189713299	rs202156373	GATCAATCCAAAA	G	924.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr3	189713345	rs10645374	G	GT	46.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.674;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr3	189837993	rs710596	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr3	189838018	rs35346557	G	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr3	190026383	rs12629166	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	190030680	rs9869263	A	G	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr3	190157898	rs6767754	G	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr3	190282197	rs6764468	G	A	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	190333162	rs35429399	TG	T	2352.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.55;SOR=2.804;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	190338039	rs11368884	C	CT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.83;ReadPosRankSum=1.229;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	190341241	rs4687160	C	A	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	190341292	rs4687161	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr3	190345098	rs34908328	GT	G	1898.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.425;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.624;QD=17.91;ReadPosRankSum=2.940;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:7,99:0.93:106
chr3	190347391	rs7611887	C	T	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	190373615	rs12106724	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.792;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	190374230	rs74418158	A	G	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:254,243:0.49:497
chr3	190576702	rs60523033	C	T	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:148,195:0.57:343
chr3	190577535	rs9855583	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr3	190578566	rs13075089	A	G	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	190594309	rs9880320	G	A	1749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-0.839;QD=11.29;ReadPosRankSum=0.986;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:68,87:0.56:155
chr3	190594334	rs9842242	A	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,91:0.56:162
chr3	190594452	rs9842514	A	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr3	190936482	rs9290979	A	C	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	190980797	rs7644510	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr3	190986110	rs10804933	C	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	190986388	rs6794154	C	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	190991384	rs9857697	G	A	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:176,173:0.50:349
chr3	190991439	rs9877400	T	C	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:86,80:0.48:166
chr3	190995847	rs3214008	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.076;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr3	190999790	rs6444533	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	190999872	rs6444534	G	A	2029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.334;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:151,109:0.42:260
chr3	190999917	rs6788319	C	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:206,136:0.40:342
chr3	190999990	rs6444535	C	T	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,83:0.43:194
chr3	191047532	rs9847278	A	G	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.73;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	191074796	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=1.034;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr3	191074873	rs188384	C	G	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	191075649	rs28627146	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr3	191087551	rs697905	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	191093053	rs2028572	T	C	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:119,97:0.45:216
chr3	191093080	rs2028573	A	G	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:132,115:0.47:247
chr3	191093175	rs2028574	T	A	4843.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:244,243:0.50:487
chr3	191093310	rs4677728	A	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:42,93:0.69:135
chr3	191093384	rs4677729	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr3	191093434	rs293806	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	191093468	rs79835547	TTC	T	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	191093475	rs4677730	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	191097908	rs293812	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	191097928	rs34031057	G	GT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.181;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr3	191097966	rs293813	T	C	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	191098121	rs293814	C	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	191098731	rs211043	G	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	191100448	rs383529	G	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	191100561	rs364519	C	A	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	191100642	rs9838011	A	T	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.249;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:125,117:0.48:242
chr3	191888452	rs34265167	GA	G	969.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.501;QD=6.93;ReadPosRankSum=-0.215;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:58,82:0.59:140
chr3	192053115	rs115400941	C	T	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,113:0.47:240
chr3	192053274	rs4571187	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr3	192125768	rs2249551	A	G	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	192444899	rs13060864	C	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:110,81:0.42:191
chr3	192635348	rs9819230	C	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr3	192993762	rs13084990	C	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	192994543	rs2271791	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	193016895	rs1878716	T	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	193023255	rs10937578	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	193024928	rs10804952	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	193031926	rs2280268	C	T	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	193036794	rs6788770	G	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	193042776	rs11926955	T	C	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	193042964	rs11715170	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	193044923	rs1387700	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	193062906	rs6444706	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	193068800	rs1038719	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr3	193069125	rs55658952	G	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.571;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	193071888	rs11300573	CA	C	1528.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr3	193080344	rs12636830	C	T	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:260,240:0.48:500
chr3	193080414	rs6797429	C	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:92,95:0.51:187
chr3	193081122	rs12637558	G	T	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:110,130:0.54:240
chr3	193081206	rs2367605	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr3	193081830	rs923496	A	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	193081864	rs923495	G	A	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr3	193081866	rs4386441	T	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr3	193090255	rs2171848	C	T	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	193090260	rs6444712	T	C	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	193096529	rs4687419	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr3	193128900	rs61401139	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr3	193129807	rs6763501	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	193153562	rs1996735	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr3	193174782	rs9879227	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr3	193180400	rs56312820	A	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	193180510	rs62285744	G	T	4173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.462;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:211,221:0.51:432
chr3	193180592	rs59451116	G	A	4623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.163;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:232,235:0.50:467
chr3	193180661	rs60585505	C	T	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:64,85:0.57:149
chr3	193182715	rs12696666	T	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr3	193183039	rs7617230	T	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	193183817	rs3796181	A	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	193201582	rs9842836	C	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-1.648;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr3	193209178	rs6788448	T	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:124,128:0.51:252
chr3	193210768	rs2130407	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr3	193272417	rs9883845	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.580;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	193272442	rs58073069	CGTGTGT	C,CGT	951.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/2:0.54,0.46:24
chr3	193311443	rs149987554	A	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr3	193334991	rs7624750	G	A	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.964;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:46,47:0.51:93
chr3	193336676	rs34307082	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:120,85:0.41:205
chr3	193355074	rs166850	T	C	3548.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.98;ReadPosRankSum=-0.741;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,146:0.99:148
chr3	193364872	rs78767626	A	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,61:0.44:138
chr3	193365749	rs113367640	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr3	193365974	rs9831900	T	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr3	193374964	rs9851685	T	C	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-0.544;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:112,81:0.42:193
chr3	193383973	rs10804957	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	193385093	.	A	G	5025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.235;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:305,266:0.47:571
chr3	193385188	rs115528092	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr3	193385233	rs114568312	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr3	193386239	rs12494482	C	T	8083.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	0/1:446,404:0.48:850
chr3	193855920	rs7629144	C	T	14209.77	.	AC=1;AF=0.500;AN=2;DB;DP=1602;set=Intersection	GT:AD:AF:DP	0/1:839,744:0.47:1583
chr3	194061819	rs116740238	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:116,67:0.37:183
chr3	194061906	rs4974538	TG	CA	5550.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;JOINED;set=Intersection	GT:AD:AF:DP	0/1:107,143:0.57:250
chr3	194062565	rs3732476	C	T	10936.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr3	194063153	rs3732474	G	A	12741.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr3	194063300	rs62288099	T	C	11142.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr3	194079943	rs73081777	A	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	194080033	rs73081778	C	T	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:155,115:0.43:270
chr3	194080336	rs4974533	G	A	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:172,162:0.49:334
chr3	194080648	rs9682540	G	A	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:116,162:0.58:278
chr3	194080759	rs73081783	G	A	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:194,186:0.49:380
chr3	194080983	rs13060627	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr3	194081089	rs11713861	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:148,118:0.44:266
chr3	194081251	rs115927352	T	G	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:256,216:0.46:472
chr3	194081635	rs923935	T	C	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:147,138:0.48:285
chr3	194083928	rs113139287	A	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr3	194084153	rs11925692	T	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:77,96:0.55:173
chr3	194084223	rs72365597	AC	A	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	194118874	rs1223989	T	C	8858.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	194119108	rs1538863	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr3	194148029	rs150154843	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	194168500	rs9861816	G	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	194219566	rs2185478	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr3	194219729	.	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.907;QD=10.32;ReadPosRankSum=-0.705;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:39,45:0.54:84
chr3	194309528	rs789837	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	194313832	rs1773184	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	194325006	rs732124	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr3	194325103	rs745169	G	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:117,107:0.48:224
chr3	194325325	rs708632	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	194331593	rs111279404	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	194331875	rs789993	A	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	194331877	rs77069986	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	194337901	rs922282	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	194344526	rs709011	G	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:96,62:0.39:158
chr3	194346544	rs1773191	T	A	12502.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	194346553	rs1773190	T	C	13166.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.344;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.34;ReadPosRankSum=1.433;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,310:1.00:311
chr3	194346803	rs1773189	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	194349027	rs1318216	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	194353772	rs11273892	C	CCCGCCCGACAG	504.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr3	194353875	rs1675955	G	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:82,58:0.41:140
chr3	194371496	rs1773206	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	194373832	rs1675953	TG	CA	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;JOINED;set=Intersection	GT:AD:AF:DP	0/1:232,187:0.45:419
chr3	194379567	rs1675948	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr3	194379596	rs1705971	C	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr3	194379646	rs11438897	T	TC	2951.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:142,113:0.44:255
chr3	194379905	rs11357453	TA	T	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	194381530	rs1705969	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.426;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	194381680	rs1675947	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr3	194381716	rs1705968	G	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	194381742	rs1705967	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	194386136	rs1705966	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.389;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	194386881	rs1675944	A	G	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-3.765;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:125,93:0.43:218
chr3	194387300	rs1675943	C	T	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.532;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:76,78:0.51:154
chr3	194390617	rs1773230	G	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=1.832;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:44,25:0.36:69
chr3	194390713	rs1675926	C	A	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:232,160:0.41:392
chr3	194390869	rs36028600	G	GA	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr3	194392683	rs1773231	A	C	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr3	194408704	rs4677673	A	G	9773.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr3	194408716	rs11914982	G	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:197,169:0.46:366
chr3	194842785	rs60922537	C	G	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.359;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:301,188:0.38:489
chr3	194842877	rs58370605	A	G	3079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.357;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:211,167:0.44:378
chr3	194842911	rs12634646	A	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:97,73:0.43:170
chr3	194928138	rs12495970	A	C	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:176,151:0.46:327
chr3	194947618	rs77035200	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr3	194991022	rs62285259	G	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.508;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr3	194991220	rs7640099	AA	GC	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	194999996	rs7610022	T	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	195006372	rs76861098	G	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	195009793	.	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr3	195015335	.	AAATT	A	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.656;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	195022428	rs41266997	G	A	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:188,174:0.48:362
chr3	195022534	rs2275519	G	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr3	195022991	rs77749568	A	C	73.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.77;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	195028183	rs13059843	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	195029738	rs10636354	G	GAAAGT	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	195053916	rs62287109	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	195076877	rs6437374	C	G	7042.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:469,403:0.46:872
chr3	195102760	rs139637475	G	GA	381.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr3	195102787	rs2275518	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr3	195133474	rs57063250	G	A	1455.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr3	195133475	rs10645683	T	TAAC	1446.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr3	195245771	rs17847363	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr3	195245805	rs17847362	G	A	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	195295708	rs142189206	G	GGGGT	1182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.184;QD=15.98;ReadPosRankSum=1.977;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:40,34:0.46:74
chr3	195300676	rs1568566	A	G	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr3	195306055	rs4677691	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	195345828	rs148520845	AG	GA	19359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.647;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=1.769;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=-11.777;QD=22.86;ReadPosRankSum=0.988;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:361,486:0.57:847
chr3	195345953	rs145174488	C	T	11368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-5.139;QD=11.18;ReadPosRankSum=5.891;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:444,573:0.56:1017
chr3	195346331	rs142792605	C	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=9.150;MLEAC=1;MLEAF=0.500;MQ=45.48;MQRankSum=-1.245;QD=2.06;ReadPosRankSum=0.336;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:154,34:0.18:188
chr3	195346352	rs201553387	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.296;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=80.065;MLEAC=1;MLEAF=0.500;MQ=44.56;MQRankSum=-6.450;QD=3.74;ReadPosRankSum=2.432;SOR=6.788;set=HC	GT:AD:AF:DP	0/1:152,42:0.22:194
chr3	195346477	rs7631117	C	T	2729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=1.939;QD=4.37;ReadPosRankSum=-1.797;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:454,170:0.27:624
chr3	195391050	rs2688561	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:232,37:0.14:269
chr3	195391111	rs202240591	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-15.878;QD=1.20;ReadPosRankSum=2.099;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:330,66:0.17:396
chr3	195391129	rs56816556	T	C	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-14.735;QD=4.17;ReadPosRankSum=3.811;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:288,57:0.17:345
chr3	195391133	rs201839577	C	A	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-14.613;QD=4.09;ReadPosRankSum=4.431;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:283,54:0.16:337
chr3	195391182	rs55824736	C	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:122,72:0.37:194
chr3	195391183	.	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-11.513;QD=2.52;ReadPosRankSum=-0.301;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:151,41:0.21:192
chr3	195395289	rs79370883	A	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-3.463;QD=2.88;ReadPosRankSum=-0.056;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:99,28:0.22:127
chr3	195395314	rs79206144	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-6.405;QD=3.62;ReadPosRankSum=-0.755;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:164,55:0.25:219
chr3	195395328	rs62287989	T	C	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-11.013;QD=9.13;ReadPosRankSum=0.835;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:207,83:0.29:290
chr3	195395334	rs75539242	A	T	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-8.666;QD=8.31;ReadPosRankSum=-1.154;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:236,79:0.25:315
chr3	195395339	.	G	A	2919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-9.065;QD=8.51;ReadPosRankSum=-0.566;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:259,84:0.24:343
chr3	195395347	rs78747381	G	A	3432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-8.645;QD=9.40;ReadPosRankSum=-1.691;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:268,97:0.27:365
chr3	195395354	rs80181010	A	G	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-8.175;QD=8.32;ReadPosRankSum=-1.227;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:300,110:0.27:410
chr3	195395379	rs73216381	T	G	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:385,162:0.30:547
chr3	195395533	rs9847770	C	T	2382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.974;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=-2.738;QD=2.86;ReadPosRankSum=0.477;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:647,185:0.22:832
chr3	195395549	rs58717446	C	CAT	14672.73	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:365,386:0.51:751
chr3	195395564	rs78351752	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-7.409;QD=0.18;ReadPosRankSum=-1.301;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:558,81:0.13:639
chr3	195395624	rs74539433	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=7.151;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-6.399;QD=1.39;ReadPosRankSum=-2.427;SOR=1.616;set=HC	GT:AD:AF:DP	0/1:136,21:0.13:157
chr3	195395631	rs201911835	A	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:74,6:0.07:80
chr3	195398250	rs80193871	C	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=51.01;MQRankSum=-4.966;QD=3.80;ReadPosRankSum=0.320;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr3	195398271	rs142433257	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	195399475	rs73892810	C	G	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=1.896;QD=12.73;ReadPosRankSum=-0.165;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:61,64:0.51:125
chr3	195399599	rs2461859	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-13.256;QD=1.29;ReadPosRankSum=1.295;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:462,95:0.17:557
chr3	195399620	rs9840981	C	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-15.475;QD=1.77;ReadPosRankSum=5.670;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:385,91:0.19:476
chr3	195399678	rs9874761	G	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr3	195400918	rs55992531	C	CT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.870;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-2.234;QD=2.63;ReadPosRankSum=0.311;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:105,37:0.26:142
chr3	195412876	rs11185503	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	195426466	rs112523267	C	T	4455.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:457,164:0.26:621
chr3	195426490	rs3107775	A	G	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:324,113:0.26:437
chr3	195447805	.	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-3.791;QD=2.22;ReadPosRankSum=-2.397;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr3	195447886	rs7627924	G	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-4.050;QD=4.00;ReadPosRankSum=1.617;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:101,36:0.26:137
chr3	195451880	rs142096782	AG	GA	22839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=3.299;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=-13.244;QD=24.35;ReadPosRankSum=4.083;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:368,570:0.61:938
chr3	195452870	.	G	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DP=538;ExcessHet=3.0103;FS=25.854;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-15.502;QD=2.92;ReadPosRankSum=-4.500;SOR=3.166;set=HC	GT:AD:AF:DP	0/1:469,66:0.12:535
chr3	195452872	.	AG	CA	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DP=565;ExcessHet=3.0103;FS=25.607;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-15.070;QD=2.94;ReadPosRankSum=-4.139;SOR=3.365;set=HC	GT:AD:AF:DP	0/1:489,73:0.13:562
chr3	195452951	rs2688542	G	C	10932.77	.	AC=1;AF=0.500;AN=2;DB;DP=1653;set=Intersection	GT:AD:AF:DP	0/1:1034,610:0.37:1644
chr3	195453017	rs144288174	GC	G	16917.73	.	AC=1;AF=0.500;AN=2;DB;DP=2169;set=Intersection	GT:AD:AF:DP	0/1:1471,665:0.31:2136
chr3	195453064	rs2550233	T	G	18762.77	.	AC=1;AF=0.500;AN=2;DB;DP=1328;set=Intersection	GT:AD:AF:DP	0/1:468,849:0.64:1317
chr3	195453244	rs140946665	G	A	3989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-0.559;QD=4.13;ReadPosRankSum=1.724;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:710,257:0.27:967
chr3	195453257	rs3828406	G	A	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	0/1:733,279:0.28:1012
chr3	195453345	rs201786008	C	T	6711.77	.	AC=1;AF=0.500;AN=2;DB;DP=1434;set=Intersection	GT:AD:AF:DP	0/1:1007,421:0.29:1428
chr3	195453357	rs150868248	T	C	6659.77	.	AC=1;AF=0.500;AN=2;DB;DP=1465;set=Intersection	GT:AD:AF:DP	0/1:1030,426:0.29:1456
chr3	195460236	rs712011	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr3	195461592	rs1809785	T	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.960;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr3	195475989	rs7621695	G	A	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.666;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:231,102:0.31:333
chr3	195476085	rs2688497	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr3	195477713	rs2291654	G	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-1.130;QD=17.04;ReadPosRankSum=1.718;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr3	195477713	.	GCC	ACA	778	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=9;HapScore=2;MGOF=25;MMLQ=27;MQ=57.46;NF=17;NR=3;PP=778;QD=41.5733937431;SC=CTGTTTGCCCGCCCCCCGCAG;SbPval=0.32;Source=Platypus;TC=40;TCF=36;TCR=4;TR=20;WE=195477723;WS=195477703;set=Platypus	GT:AD:AF:DP	1/0:20,20:0.50:40
chr3	195477715	rs2291653	C	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-1.018;QD=16.07;ReadPosRankSum=1.300;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr3	195477791	rs2291652	G	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:131,152:0.54:283
chr3	195478012	rs2291651	G	C	4279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=24.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=2.670;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:86,214:0.71:300
chr3	195479256	rs2258447	T	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:117,96:0.45:213
chr3	195480153	rs78765346	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:113,86:0.43:199
chr3	195484244	rs2550270	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr3	195487737	rs2246771	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr3	195489009	rs2246901	C	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr3	195489067	rs2246980	C	G	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:132,90:0.41:222
chr3	195489669	rs2550263	C	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr3	195490284	rs2550261	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	195490838	rs377595393	ATCCAGAT	AAGAT,A	541.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	0/1:0.47:32
chr3	195490842	rs34858176	AGATG	A	535.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=0.738;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr3	195492027	rs11926236	T	C	5191.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:154,258:0.63:412
chr3	195495916	rs2550240	G	C	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:211,232:0.52:443
chr3	195496129	rs2688492	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	195497121	rs79706438	T	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr3	195497174	rs2259102	C	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:147,119:0.45:266
chr3	195497743	rs2260685	T	C	3844.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:191,196:0.51:387
chr3	195497809	rs2259153	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr3	195501149	rs2259292	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,80:0.59:136
chr3	195501258	rs2259331	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr3	195505417	rs2259419	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr3	195505664	rs2688513	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:96,69:0.42:165
chr3	195505788	rs2550253	G	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-1.007;QD=3.61;ReadPosRankSum=-0.630;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr3	195512004	.	T	G	1801	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=2;MGOF=31;MMLQ=24;MQ=51.51;NF=50;NR=37;PP=1801;QD=21.100818535;SC=CTGAGGAAGTTTCGGTGACAG;SbPval=0.52;Source=Platypus;TC=87;TCF=50;TCR=37;TR=87;WE=195512012;WS=195511983;set=Platypus	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	195512042	.	T	C	1980	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=41;MMLQ=26;MQ=53.68;NF=55;NR=47;PP=1980;QD=19.7526589465;SC=CCTGTGGATGTTGAGGAAGGG;SbPval=0.54;Source=Platypus;TC=102;TCF=55;TCR=47;TR=102;WE=195512050;WS=195512032;set=Platypus	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	195512107	.	T	A	940	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=49;MMLQ=17;MQ=57.51;NF=48;NR=47;PP=940;QD=10.2607496058;SC=AGCATCGGTGTCATGAAGAGC;SbPval=0.45;Source=Platypus;TC=100;TCF=48;TCR=52;TR=95;WE=195512115;WS=195512093;set=Platypus	GT:AD:AF:DP	1/1:5,95:0.95:100
chr3	195512186	rs202060675	T	C	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	195512212	rs75588776	G	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,31:0.28:112
chr3	195515414	rs71180964	T	TGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTC	954.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-2.248;QD=27.28;ReadPosRankSum=2.446;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	195515617	rs2641776	G	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr3	195516630	rs3103954	G	T	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:153,151:0.50:304
chr3	195516878	rs2177336	T	C	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:139,176:0.56:315
chr3	195517258	rs1106502	G	A	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:91,128:0.58:219
chr3	195517321	rs1104760	G	A	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:89,117:0.57:206
chr3	195517553	rs882605	A	C	3266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.511;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:135,159:0.54:294
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	2920.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr3	195518330	rs3107764	C	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr3	195538501	rs143120396	TTC	T	1197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.391;QD=2.32;ReadPosRankSum=0.901;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:422,94:0.18:516
chr3	195595632	rs13087251	A	G	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.036;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:85,76:0.47:161
chr3	195596636	rs13084875	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.431;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	195597288	rs2278033	T	C	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr3	195603634	rs11185487	G	A	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	195603652	rs9815549	T	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	195612034	rs3747672	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr3	195615376	rs3747669	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,80:0.52:154
chr3	195622041	rs6762607	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr3	195638506	rs2086358	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr3	195686832	rs201549703	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-0.432;QD=8.35;ReadPosRankSum=0.685;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	195686891	rs201127123	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=0.688;QD=10.59;ReadPosRankSum=-0.819;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	195690360	rs201250692	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=5.853;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=-6.278;QD=1.86;ReadPosRankSum=-0.637;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:93,16:0.15:109
chr3	195690397	rs148308206	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.08;QD=31.71;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	195692311	rs62282793	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-7.944;QD=1.12;ReadPosRankSum=-0.718;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr3	195692347	rs62282794	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-11.548;QD=1.03;ReadPosRankSum=0.221;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:154,30:0.16:184
chr3	195692419	rs77887672	C	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-13.301;QD=0.45;ReadPosRankSum=2.386;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:262,42:0.14:304
chr3	195701278	rs200131790	C	T	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=51.37;MQRankSum=-11.641;QD=1.40;ReadPosRankSum=-2.858;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:755,83:0.10:838
chr3	195701285	rs201085786	G	T	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.63;MQRankSum=-10.875;QD=1.37;ReadPosRankSum=-3.174;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:793,91:0.10:884
chr3	195701301	rs201657527	A	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=-9.848;QD=1.59;ReadPosRankSum=-0.363;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:902,104:0.10:1006
chr3	195701304	rs200047587	C	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=-9.848;QD=1.66;ReadPosRankSum=0.296;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:902,104:0.10:1006
chr3	195701310	.	C	CAA	1685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DP=1035;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-9.611;QD=1.63;ReadPosRankSum=1.815;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:928,107:0.10:1035
chr3	195701331	rs78212497	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=1093;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-6.593;QD=0.51;ReadPosRankSum=0.698;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:944,149:0.14:1093
chr3	195701444	rs138996350	AAAGG	A	2101.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:144,62:0.30:206
chr3	195701472	.	A	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=48.05;MQRankSum=-1.808;QD=5.68;ReadPosRankSum=-1.140;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr3	195701483	rs377526928	TCCA	T	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:66,19:0.22:85
chr3	195706589	rs146645407	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.84;QD=31.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	195710948	rs368472526	G	A	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=5.347;QD=5.17;ReadPosRankSum=0.070;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:186,87:0.32:273
chr3	195710971	rs4927836	G	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-6.390;QD=1.06;ReadPosRankSum=1.334;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:279,54:0.16:333
chr3	195710989	rs2620604	G	A	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-12.194;QD=7.88;ReadPosRankSum=0.544;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:267,89:0.25:356
chr3	195710993	rs4927692	A	G	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-12.034;QD=7.80;ReadPosRankSum=0.569;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:274,89:0.25:363
chr3	195711042	rs56383352	C	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:182,94:0.34:276
chr3	195754164	rs6782834	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr3	195779155	rs41298097	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	195779163	.	CTTT	C	377.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.06;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	195782176	rs419068	CAAGACAACGCG	TGAGACAACGCG,TGAGACAATGCA,TGAGACAATGCG	10633.77	.	AC=2,0,0;AF=1.00,0.00,0.00;AN=2;DB;DP=241;JOINED;set=Intersection	GT:AF:DP	1/1:1.00:239
chr3	195782184	rs419059	C	T	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	195782187	rs41297537	G	A	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.598;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:124,91:0.42:215
chr3	195784997	rs3933	G	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	195785382	rs41297513	C	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,60:0.47:129
chr3	195789376	rs526860	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.641;QD=13.44;ReadPosRankSum=-1.045;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr3	195789428	rs507131	C	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	195798258	rs480760	T	C	17426.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr3	195804021	rs41300435	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.720;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:48,70:0.59:118
chr3	195926234	rs939892	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	195935207	rs12497404	C	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr3	195936446	rs4916502	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	195937410	rs6795707	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr3	195937659	rs6795963	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr3	195937678	rs12718059	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	195941216	rs7642243	C	G	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:102,94:0.48:196
chr3	195953775	rs68119320	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	195954960	rs76496703	T	C	7254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.767;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:409,377:0.48:786
chr3	195955203	rs78736929	T	C	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.08;ReadPosRankSum=0.155;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	195955762	rs939885	G	A	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	195956675	rs60276076	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr3	195956726	.	AAG	A	72	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=28;MQ=60.0;NF=2;NR=2;PP=72;QD=19.25;SC=CATCTCTTGAAAGAGAGAGAG;SbPval=0.42;Source=Platypus;TC=24;TCF=8;TCR=16;TR=4;WE=195956735;WS=195956716;set=Platypus	GT:AD:AF:DP	0/1:20,4:0.17:24
chr3	195956827	rs17852687	T	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:106,82:0.44:188
chr3	195956970	rs67261052	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr3	195959200	.	C	T	345.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	195959859	rs56867360	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	195959924	rs1476331	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr3	195960225	rs9343	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	195974648	rs76599149	T	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	195984818	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.388;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr3	195994049	.	C	CA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.451;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr3	196051087	rs147354585	GTC	G	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.817;QD=1.04;ReadPosRankSum=-1.001;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:373,60:0.14:433
chr3	196088809	rs368893517	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=3.201;QD=1.53;ReadPosRankSum=0.378;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:65,25:0.28:90
chr3	196158773	rs6583309	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,48:0.42:113
chr3	196210590	rs7643192	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	196210808	rs7646174	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-2.221;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr3	196215352	rs34023868	C	CA	44.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.253;QD=8.98;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr3	196215451	rs62798260	CA	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.642;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.951;QD=5.09;ReadPosRankSum=2.670;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr3	196215660	rs11185543	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	196235191	rs73891273	A	G	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr3	196236244	rs6803596	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.792;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr3	196294104	rs9842616	C	G	6973.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	196386964	rs1798631	C	G	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:299,208:0.41:507
chr3	196439263	rs844543	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.370;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	196458052	.	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=1.301;QD=1.45;ReadPosRankSum=-0.294;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	196533744	rs115952540	T	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	196541580	rs11185455	G	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	196547446	rs2084382	G	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr3	196547538	rs2166799	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	196554266	rs62410763	C	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr3	196613683	rs150375675	A	AG	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	196626689	rs9842002	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	196627088	rs9825635	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	196627335	rs6764463	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	196627356	rs9810317	C	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.692;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr3	196627361	rs6772870	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	196654507	.	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.839;QD=5.54;ReadPosRankSum=0.318;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr3	196656772	rs1602	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	196657670	rs63736860	CT	C	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr3	196666069	rs147785857	ACT	A	4253.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:122,115:0.49:237
chr3	196674749	rs4916589	C	T	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:128,121:0.49:249
chr3	196674916	rs1147240	A	C	6960.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:305,347:0.53:652
chr3	196674972	rs574365	CT	TC	9453.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;JOINED;set=Intersection	GT:AD:AF:DP	0/1:253,246:0.49:499
chr3	196730203	.	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.519;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	196733368	rs114726464	C	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	196735624	rs965666	G	A	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:258,218:0.46:476
chr3	196742290	rs9855410	T	C	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:159,163:0.51:322
chr3	196742395	rs41284049	G	A	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:117,139:0.54:256
chr3	196743130	rs6779362	T	C	3061.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:107,146:0.58:253
chr3	196744218	rs185163987	G	A	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr3	196746629	rs1056664	T	C	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:203,170:0.46:373
chr3	196749798	rs2288766	T	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr3	196750016	rs2288765	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,100:0.43:230
chr3	196750841	rs2280294	C	A	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chr3	196751474	rs2280296	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	196753442	rs73893756	G	A	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:202,226:0.53:428
chr3	196754819	rs2276788	C	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=1.406;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:53,31:0.37:84
chr3	196754856	rs12637442	C	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	196778438	rs7629533	C	T	4850.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:215,247:0.53:462
chr3	196793466	rs140259336	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.88;ReadPosRankSum=-1.442;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	196795720	rs6804448	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	196795879	rs57032552	A	ACT	145.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	196803647	rs12632559	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	196869518	rs9866058	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	196869688	rs7628652	A	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	196869820	rs9866550	T	A	87.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	197020630	rs364644	G	A	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	197020718	rs434681	T	C	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	197020780	rs3836429	G	GA	2997.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	197020871	rs450891	G	A	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	197361944	rs11918438	G	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr3	197361995	rs56411292	A	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-7.390;QD=2.12;ReadPosRankSum=-0.645;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:334,80:0.19:414
chr3	197362030	rs2451791	C	T	5397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-20.897;QD=7.03;ReadPosRankSum=1.347;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:452,316:0.41:768
chr3	197362179	rs11915811	T	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.049;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=6.906;MLEAC=1;MLEAF=0.500;MQ=51.57;MQRankSum=-1.633;QD=2.53;ReadPosRankSum=0.418;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:233,55:0.19:288
chr3	197362184	rs9867990	C	T	5263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=5.404;MLEAC=1;MLEAF=0.500;MQ=50.96;MQRankSum=-1.451;QD=20.17;ReadPosRankSum=-0.845;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:120,141:0.54:261
chr3	197362187	rs9867993	C	T	5223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=50.41;MQRankSum=-1.908;QD=21.15;ReadPosRankSum=0.151;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:118,129:0.52:247
chr3	197401260	rs143310890	G	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr3	197401268	rs3833589	AG	A	1489.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,78:0.43:181
chr3	197401952	rs28562770	T	C	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:184,183:0.50:367
chr3	197404264	rs140397045	C	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr3	197407925	.	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-0.636;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr3	197407939	rs375210676	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	197407963	rs201380779	G	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr3	197408943	rs6797009	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr3	197409526	rs9817144	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr3	197411127	rs12107435	C	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr3	197422681	rs143707421	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	197422999	rs149712613	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	197428127	rs7612230	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	197432063	rs58507505	T	C	6109.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:330,311:0.49:641
chr3	197432171	rs140955911	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr3	197482760	rs13068986	C	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	197483279	rs6794391	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	197483325	rs150632366	A	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:114,147:0.56:261
chr3	197495334	rs3205525	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chr3	197496984	rs1708460	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	197500394	rs3830497	T	TTTTG	3982.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:93,103:0.53:196
chr3	197544200	rs55896070	C	CGTGTGTGTGTGT	559.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=37.32;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	197544201	.	A	ATTTTGTGTGTGTGTGCG	560.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=50.98;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	197557635	rs501101	C	T	9722.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr3	197566084	rs4857594	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.38;ReadPosRankSum=0.531;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	197566254	rs17850206	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.327;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr3	197574248	rs73089359	T	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.488;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr3	197579466	rs36078463	C	T	2825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.384;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:172,146:0.46:318
chr3	197581147	rs9863587	A	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:96,67:0.41:163
chr3	197585685	rs151122668	C	G	3589.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:248,191:0.44:439
chr3	197596905	rs372930585	GC	G	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr3	197597194	rs11185486	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr3	197639381	rs9809736	A	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	197670507	rs375854168	CA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-0.322;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	197670573	rs78064975	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr3	197670706	rs34070639	G	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:167,130:0.44:297
chr3	197677666	rs79249954	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr3	197680123	rs77509924	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr3	197682555	rs74579899	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr3	197687102	rs112408295	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr3	197687433	rs113060473	G	GA	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr3	197701913	rs7373165	G	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr3	197702016	rs7373174	G	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	197712759	rs7373242	T	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:196,158:0.45:354
chr3	197717643	rs150387425	A	ATATT	4588.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	197762623	rs7640149	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	197765432	rs73091377	C	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:107,111:0.51:218
chr4	53428	rs2859214	G	A	12500.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;MQ=59.66;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr4	60303	rs3864127	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,105:0.48:221
chr4	60319	rs375419452	G	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-3.186;QD=1.26;ReadPosRankSum=0.232;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:188,37:0.16:225
chr4	60335	rs2780400	A	T	4809.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:30,184:0.86:214
chr4	60400	rs3864128	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:20,76:0.79:96
chr4	67783	rs113282456	C	CT	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.543;QD=2.79;ReadPosRankSum=0.472;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:151,70:0.32:221
chr4	67857	rs6599364	C	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr4	85800	rs7667914	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	85995	rs61336127	C	CA	2957.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.55;QD=38.41;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	86016	rs57253237	G	GC	3129.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.28;QD=42.29;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	86022	rs74490941	C	A	2626.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=49.56;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	86023	rs78362263	A	T	2536.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=47.86;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	86024	rs77715101	G	A	2446.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=46.17;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	86031	rs367720730	CA	C	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.28;QD=46.95;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	86034	rs57594632	TC	T	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.33;QD=46.03;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	86040	rs17853557	G	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.22;QD=49.93;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	86042	rs17857099	A	G	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=46.15;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	86044	rs17857100	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.53;QD=44.47;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	86101	rs58319295	G	GC	5197.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.01;QD=37.66;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	86738	rs2353625	A	G	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	86798	rs3789149	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	87134	rs10012284	T	G	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:3,177:0.98:180
chr4	87277	rs2006764	G	C	6357.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	87313	rs60154095	G	GA	8953.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=37.00;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	124375	rs3747693	T	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	135694	rs12504142	G	A	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	155713	rs7440274	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	263968	.	C	CTATGTACATAAAGGTTTCCGGACTGTCTAAAGGCTTTGCCACATT	230.82	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	265743	rs114872625	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	299227	rs192089946	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	331658	rs3749520	T	C	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=46.09;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	331666	rs3749521	G	C	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=42.26;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	331693	rs5855672	G	GC	5156.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	338129	rs75245145	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,13:0.22:59
chr4	338156	rs79227679	T	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-4.298;QD=4.61;ReadPosRankSum=-2.405;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:83,37:0.31:120
chr4	338186	rs78725891	G	T	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-3.448;QD=13.02;ReadPosRankSum=-1.988;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:100,57:0.36:157
chr4	338197	.	T	TGA	2073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-4.340;QD=12.34;ReadPosRankSum=0.035;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:110,58:0.35:168
chr4	338200	.	G	C	2093.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-4.212;QD=12.10;ReadPosRankSum=1.100;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:115,58:0.34:173
chr4	338201	.	ATC	A	847.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-4.385;QD=4.76;ReadPosRankSum=1.013;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:121,57:0.32:178
chr4	338205	rs80052234	T	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-4.385;QD=4.81;ReadPosRankSum=1.400;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:121,57:0.32:178
chr4	338246	rs79348421	G	A	2168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.854;QD=12.99;ReadPosRankSum=-0.137;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:107,60:0.36:167
chr4	338252	rs76962477	G	A	2171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.818;QD=13.16;ReadPosRankSum=-0.901;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:105,60:0.36:165
chr4	338258	rs80241916	G	A	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-2.972;QD=14.32;ReadPosRankSum=-1.961;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:95,55:0.37:150
chr4	338260	rs76915575	A	G	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.997;QD=13.66;ReadPosRankSum=-2.097;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:93,53:0.36:146
chr4	338266	rs74323716	G	A	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.458;QD=12.70;ReadPosRankSum=-1.536;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:92,46:0.33:138
chr4	338289	rs77578216	A	C	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-2.997;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr4	338296	rs77544910	G	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-2.993;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr4	338301	.	G	GA	321.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.338;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=7.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-3.033;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr4	338302	.	G	GA	321.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.231;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=16.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-2.635;SOR=4.070;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr4	338305	.	CCGGG	C	237.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.635;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=16.869;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.682;QD=4.49;ReadPosRankSum=-3.290;SOR=3.922;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr4	338310	.	T	TGA	168.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.145;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=13.926;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=0.655;QD=3.31;ReadPosRankSum=-2.359;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr4	338313	.	A	ACC	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=11.036;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=0.633;QD=2.54;ReadPosRankSum=-2.837;SOR=3.345;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr4	343795	rs3037605	C	CTGCT	3271.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	376888	rs6854214	C	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:3,87:0.97:90
chr4	420664	rs1053401	G	T	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:4,77:0.95:81
chr4	420688	rs2280250	C	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,71:0.95:75
chr4	429720	rs894534	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	437831	rs72501950	C	T	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	517198	rs7678962	G	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	517376	rs7666226	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	517461	rs7666425	T	C	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr4	517622	rs13150531	C	T	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	520853	rs13114026	G	A	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	527534	rs11931692	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	527677	rs34623004	T	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr4	533001	rs1127410	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	647889	rs142597807	T	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	648643	rs10902758	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	649680	rs115328178	G	C	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	649876	rs28630797	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	656604	rs28586910	G	T	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	660340	rs61739716	G	A	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	663908	rs28675771	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	663916	rs61760239	C	A	2659.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.153;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.90;ReadPosRankSum=2.269;SOR=0.378;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr4	664028	.	A	AT	238.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=2.426;SOR=0.053;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr4	667619	rs116499117	G	A	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	671887	rs58227539	C	T	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	671895	rs58342428	C	CAA	2179.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	676992	rs10030136	C	T	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	677333	.	G	A	774.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	738226	rs6835343	A	G	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	738486	.	G	GC	267.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=33.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	738512	rs6841958	T	C	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	755056	rs147938573	C	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	759709	rs6810428	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	759721	rs62294078	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	759733	rs6816483	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	780286	rs10794536	C	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	818647	rs2086211	C	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	843622	rs33919242	AC	A	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr4	843630	.	C	T	2120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=6.767;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.21;ReadPosRankSum=1.582;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr4	843695	rs8093	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	845737	rs142037003	C	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	845772	rs10031922	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	845841	rs17165087	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	858866	rs1026739	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=43.18;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	858874	rs3214922	T	TC	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=43.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	858941	rs1026738	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	860146	rs2306248	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	860192	rs1064207	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	862502	rs2306244	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	871675	rs1564280	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	876497	rs146926083	G	A	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	887513	rs33951409	AC	A	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	906087	rs73064439	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	906647	rs2279178	A	G	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	941864	rs141584992	T	G	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr4	945060	rs146777141	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	946056	rs150859578	G	A	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	946226	rs11552301	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	946262	.	CTGTGTGTGTGTG	C,CTG	190.84	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:5
chr4	946974	rs2290405	G	A	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	951505	rs59165344	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	951681	rs6854241	T	C	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr4	952261	rs138246712	C	T	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	954247	rs3733345	G	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	954275	rs3733346	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	954277	rs3733347	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	954311	rs3733349	C	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	960081	rs4690324	G	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	960682	rs138999831	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	960713	rs4690196	G	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	961191	rs1377587	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	961373	rs1377586	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	980464	rs4690220	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	980971	rs10794537	T	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	981188	rs186394244	C	T	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	983060	rs3796622	T	C	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	985727	rs3822020	A	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	985826	rs28392476	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	994414	rs3755955	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	995305	rs6815946	T	C	3483.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=1.768;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:2,139:0.99:141
chr4	995422	rs6829789	G	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	995459	rs6848974	C	T	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	995919	rs6830825	G	C	3490.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.07;ReadPosRankSum=0.934;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr4	995997	rs6811373	A	G	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	996012	rs6831021	G	C	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	996165	rs6831280	G	A	12501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=2.628;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:4,493:0.99:497
chr4	996248	rs6836258	G	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	996560	rs115790973	C	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	996690	rs73066479	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	996768	rs115134980	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	996888	rs115929690	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	996986	rs188458034	G	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	997095	rs1131853	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	997485	rs2305488	T	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	1006333	rs4647942	G	A	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	1016371	.	G	A	215.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	1050437	rs7680608	C	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	1050653	rs3816474	G	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	1050849	rs10003009	GT	AC	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	1050909	rs9992925	A	T	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	1052078	rs2290410	A	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	1052095	.	C	CGGGGGTTAGAACGCTGTGAAGAAGGTGCTTGCG	1402.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=77.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	1052125	rs11724371	T	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	1052166	rs2248083	A	C	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	1052206	rs2045069	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	1052212	rs2045068	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	1052355	rs2045067	C	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	1067267	rs2290408	G	T	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	1067638	rs6852155	T	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	1084723	rs658846	G	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1087168	rs61648964	A	AAT	1991.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	1087171	rs59985183	G	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	1087265	rs1670534	T	C	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=25.10;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	4233.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=49.23;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	1087329	rs118112880	C	T	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=58.39;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	1087338	rs11725984	C	T	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	1090625	rs4045481	G	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	1102050	rs4974644	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	1164132	rs76966734	C	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	1164552	rs13115935	A	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	1165741	rs922697	A	G	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	1194594	rs13115903	A	T	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	1194630	rs56401136	T	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	1207517	rs11247979	T	C	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	1215525	rs115845012	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	1217056	rs2004531	G	A	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	1243573	rs1680032	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	1243617	rs3755920	T	C	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	1244416	rs1732115	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	1244891	rs112187671	C	T	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	1283608	rs17164589	G	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	1291640	rs2293633	T	C	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	1291711	rs2293634	T	G	4875.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-0.594;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,188:0.99:189
chr4	1291969	rs11723894	CC	TT	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1292014	rs11729031	T	C	311.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	1309416	rs2272481	C	T	543.79	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr4	1317192	rs2141656	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1332175	rs13147602	A	G	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	1369093	rs11941200	CT	GG	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	1373696	.	G	GTTC	430	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=3;HapScore=2;MGOF=91;MMLQ=24;MQ=56.37;NF=8;NR=0;PP=430;QD=58.125;SC=GAGTGACCGTGTTCTCCCTGG;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=8;WE=1373709;WS=1373693;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	1373699	.	C	CT	367.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=40.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	1373701	.	C	G	198	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=2;HapScore=2;MGOF=91;MMLQ=27;MQ=58.33;NF=8;NR=0;PP=198;QD=29.0964015684;SC=ACCGTGTTCTCCCTGGGTGCT;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=8;WE=1373709;WS=1373693;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	1373701	rs200433200	C	CTG	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=40.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	1374789	rs28733902	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	1388350	.	G	A	883	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=36;MMLQ=22;MQ=56.34;NF=22;NR=32;PP=883;QD=16.9957631953;SC=CTGCTCACACGTGCCCATGTG;SbPval=0.12;Source=Platypus;TC=159;TCF=86;TCR=73;TR=54;WE=1388358;WS=1388340;set=Platypus	GT:AD:AF:DP	1/0:105,54:0.34:159
chr4	1388350	.	G	GTGCCCATGTGGAGTGCCCGCCTGCTCACACA	8166.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.54;MQRankSum=-0.830;QD=39.26;ReadPosRankSum=0.232;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:4,204:0.98:208
chr4	1388375	.	T	TCA	2971	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=27;MQ=55.45;NF=1;NR=32;PP=2971;QD=20;SC=GCCCGCCTGCTCATGTGCCCA;SbPval=0.99;Source=Platypus;TC=100;TCF=16;TCR=84;TR=33;WE=1388387;WS=1388365;set=Platypus	GT:AD:AF:DP	1/0:67,33:0.33:100
chr4	1388583	rs9328733	A	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=25.29;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	1389156	rs71614972	T	C	7893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;MQRankSum=3.445;QD=41.55;ReadPosRankSum=-0.765;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr4	1389168	rs77363062	G	A	8251.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.306;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.032;MLEAC=2;MLEAF=1.000;MQ=58.65;MQRankSum=2.257;QD=41.68;ReadPosRankSum=0.810;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,196:0.99:198
chr4	1397297	rs11945310	T	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	1619865	rs11722375	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	1642928	.	G	GCGGCA	440	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=3;MGOF=163;MMLQ=24;MQ=59.3;NF=10;NR=1;PP=440;QD=48.0093411219;SC=GCAGGTGCCGGGCCGTGGCCC;SbPval=0.94;Source=Platypus;TC=13;TCF=10;TCR=3;TR=11;WE=1642948;WS=1642920;set=Platypus	GT:AD:AF:DP	1/0:2,11:0.85:13
chr4	1642940	rs137948989	G	A	144.80	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	1646017	rs4865428	C	G	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	1659128	rs56214302	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	1659162	rs3860715	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	1805296	rs3135883	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	1806012	rs377096563	TG	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=2.154;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:103,16:0.13:119
chr4	1806834	rs4865476	G	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	1807894	rs7688609	G	A	13959.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr4	1809127	rs34562534	CGT	C	1204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-0.982;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,41:0.87:47
chr4	1818594	rs9328763	C	T	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr4	1954945	rs489550	A	G	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	1961137	rs474235	G	A	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	1985257	rs553148	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	1988188	rs3034718	C	CCT	2617.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	1988193	rs1077020	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	1988257	rs572770	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	2044128	rs570712	C	T	702.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	2061682	.	C	CT	125	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	2073699	.	C	A	2203.77	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	2130783	.	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.04;ReadPosRankSum=2.539;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr4	2131060	rs34129641	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	2160894	rs10488836	C	T	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	2175733	rs2022302	A	G	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	2175791	rs2022343	TC	CG	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	2176351	rs12647917	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	2176454	rs9328764	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	2176506	rs6822665	C	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.82;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2176551	rs111301518	CTT	C	74.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.71;ReadPosRankSum=-0.431;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	2177929	rs6823382	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	2178108	rs6599411	C	T	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	2178127	rs6599412	T	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	2179074	rs6810845	A	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	2179086	rs6816862	T	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	2181080	rs6830513	T	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	2181313	rs6820291	C	G	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	2194901	rs10015921	A	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	2194946	rs10011549	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	2194953	rs10002583	G	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	2195024	rs10018786	T	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr4	2195089	rs10018882	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	2195128	rs10016105	A	G	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	2252531	rs2071661	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	2252598	rs2071660	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	2252980	rs2071658	T	G	468.94	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr4	2256798	rs2236999	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	2260812	rs28619238	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	2262191	rs2269487	A	G	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	2275145	rs736455	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2275718	rs2182682	G	A	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	2275835	rs2051561	G	A	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	2276047	rs11248093	T	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	2306053	rs661301	A	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr4	2307121	rs61742112	G	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	2332799	rs1887364	C	T	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2343349	rs615447	C	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	2343460	rs145323447	G	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	2343474	rs57991672	C	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	2428041	.	C	A	196.90	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	2428094	rs2269494	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	2438492	rs1203763	T	C	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	2439670	rs1203762	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	2444931	rs1203814	A	G	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	2446720	rs3849664	G	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	2451694	rs3108494	T	C	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	2460803	rs704346	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	2461888	rs3135152	A	G	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	2502299	rs55745322	A	ATT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	2513620	rs3128839	G	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	2514378	rs73078319	C	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	2698422	rs231712	G	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	2822289	rs2239727	C	A	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	2822467	rs231402	G	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	2826218	rs34274570	C	CA	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	2826400	rs3213501	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	2828771	rs1794395	T	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	2829077	rs2269485	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr4	2829478	rs13137906	G	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	2831383	rs231399	T	G	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr4	2833966	rs231396	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	2901356	rs140379981	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	2928125	rs1263345	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	2928413	rs4964	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	2933271	rs1263348	G	A	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	2934308	rs1263349	G	A	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	2935251	rs2301374	T	A	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	2940772	rs76093578	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr4	2943361	rs1054090	T	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	2944185	rs6839805	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	2951804	rs2515960	A	G	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	2955145	rs1475977	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	2955192	rs1475976	C	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	2955465	rs1475975	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	2965611	rs13120295	G	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	2965676	rs16843684	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	2965695	rs10021191	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	2965874	rs142156088	A	AC	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.105;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr4	2965914	rs10030130	C	A	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	2988636	rs2488815	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.83;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	2988752	rs2471324	G	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=2.327;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	2990338	rs2051556	G	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	2990375	rs2051555	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	2990499	rs2960306	G	T	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	2993980	rs2515941	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	2994107	rs2471338	T	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	3006043	rs1024323	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr4	3029588	rs2857844	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	3029623	rs7677445	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr4	3039150	rs1801058	T	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	3039311	rs2071689	C	T	344.94	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr4	3040068	rs34020100	T	G	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	3040279	rs11451355	G	GA	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=1.593;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	3076603	rs374076986	CCAGCAG	C,CCAG	1065.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/2:0.23,0.77:31
chr4	3076693	.	GC	TC	1451	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=26;MMLQ=24;NF=1,2;NR=13,2;PP=1451,16;QD=104.357142857;SC=CGCCGCCGCCGCCTCCTCAGC;SbPval=0.59;Source=Platypus;TC=16;TCF=1;TCR=15;TR=14,4;WE=3076701;WS=3076683;set=Platypus	GT:AD:AF:DP	0/1:23,4:0.15:27
chr4	3076693	.	GC	GCCGCCGCCTC	1675.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AF:DP	1/1:1.00:39
chr4	3128946	rs16843871	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	3133594	rs3025853	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	3144738	rs363153	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr4	3174256	rs363098	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	3174845	rs3025837	A	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	3180021	rs363096	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	3180283	rs363095	G	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	3184229	rs363094	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	3188265	rs363093	C	T	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	3189547	rs363125	C	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	3210462	rs7654806	C	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	3213875	rs362278	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	3214460	rs79689511	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	3215835	rs362331	T	C	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	3216815	rs916171	C	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	3219613	rs2857790	A	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	3225082	rs112287988	G	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	3225371	rs82334	A	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	3225389	rs82333	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	3225868	rs79218467	G	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	3227539	rs362316	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	3227591	.	TT	AA	291.31	.	AC=1;AF=0.500;AN=2;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr4	3230802	.	CCA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.788;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr4	3235184	rs3216820	GC	G	1548.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr4	3235241	rs362314	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	3240159	rs2071704	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	3240526	rs2858081	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	3255301	rs11275385	CGGCCACAGTGGTTG	C	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	3257373	rs3135173	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	3263138	rs3095073	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	3265479	rs3095078	C	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	3317918	rs79640085	C	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	3317943	rs111680504	T	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	3317951	rs113298998	A	G	2437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.63;ReadPosRankSum=2.209;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr4	3318413	rs2236052	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	3318806	rs75833497	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	3319275	rs80251844	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr4	3344891	rs2073286	T	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	3417845	rs3213507	G	C	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	3443931	rs13108218	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	3449886	rs28468427	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	3475107	rs2344208	G	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	3475252	rs4325970	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	3478019	.	T	A	1675	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=69;MMLQ=27;MQ=65.83;NF=25;NR=19;PP=1675;QD=38.8584366488;SC=GCCCGTGATGTCCTCTCACCC;SbPval=0.44;Source=Platypus;TC=49;TCF=29;TCR=20;TR=44;WE=3478058;WS=3478009;set=Platypus	GT:AD:AF:DP	1/1:5,44:0.90:49
chr4	3478025	.	CACCCTGCCCGCCCGTGATGCCCTCTT	C	2964	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=69;MMLQ=24;MQ=65.43;NF=12;NR=20;PP=2964;QD=20;SC=GATGTCCTCTCACCCTGCCCG;SbPval=0.64;Source=Platypus;TC=33;TCF=13;TCR=20;TR=32;WE=3478058;WS=3478009;set=Platypus	GT:AD:AF:DP	0/1:1,32:0.97:33
chr4	3478323	rs2699426	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	3487151	rs916189	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	3487237	rs2006791	A	G	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	3494495	rs16844460	G	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	3495030	rs16844467	C	T	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	3498448	rs3135164	T	C	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	3501849	rs2699409	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	3502163	rs2858037	A	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	3514938	rs1741553	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	3516689	rs2515967	T	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	3516742	rs1794442	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	3534030	rs148017639	C	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	3589623	rs10937959	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr4	3589689	rs7657417	C	A	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:81,123:0.60:204
chr4	3589719	rs59190481	CA	C	6567.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr4	3589846	rs7672828	T	C	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:83,146:0.64:229
chr4	3590537	rs73199384	G	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr4	3590549	rs73793633	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr4	3590577	rs73793634	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr4	3590588	rs73199385	A	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr4	3590683	rs62272966	T	G	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:100,119:0.54:219
chr4	3590711	rs62272967	G	T	4590.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:98,116:0.54:214
chr4	3590730	rs62272968	G	A	4214.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,110:0.55:199
chr4	3590817	rs62272969	T	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr4	3590823	rs72180705	GACAC	G,GAC	3573.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.300;QD=32.79;ReadPosRankSum=0.406;SOR=0.901;set=HC	GT:AD:AF:DP	1/2:2,70,37:0.64,0.34:109
chr4	3590878	rs62272970	C	T	5205.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:107,137:0.56:244
chr4	3590911	rs34447251	A	C	6306.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:120,184:0.61:304
chr4	3591015	rs62272971	A	C	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:245,274:0.53:519
chr4	3591049	rs62272972	C	T	12014.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:292,331:0.53:623
chr4	3591069	rs62272973	C	T	11475.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:271,305:0.53:576
chr4	3769266	rs181208952	G	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	3769295	.	AGGGGGCGGGGCC	A	457.73	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	3769500	rs111546772	C	T	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.73;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	3769798	rs149519379	T	TTCCCAGAGACCCGGGGAGCTC	910.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	3770069	rs76337672	G	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	4190507	.	C	CTTG	321.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-7.610;QD=5.36;ReadPosRankSum=-1.886;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr4	4190508	.	C	T	330.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-7.610;QD=5.51;ReadPosRankSum=-1.341;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr4	4190511	.	G	GTCACTTGTTA	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-7.850;QD=8.20;ReadPosRankSum=-1.553;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr4	4190525	rs201195209	C	T	51.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-3.920;QD=0.56;ReadPosRankSum=-1.200;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:85,8:0.09:93
chr4	4190526	rs199847133	C	T	51.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-3.920;QD=0.56;ReadPosRankSum=-1.234;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:85,8:0.09:93
chr4	4190576	rs199742451	C	G	913.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-10.316;QD=7.88;ReadPosRankSum=0.407;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:88,28:0.24:116
chr4	4190577	rs200368405	G	C	913.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-10.570;QD=7.55;ReadPosRankSum=-0.178;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr4	4190595	rs79218997	G	C	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-12.214;QD=5.74;ReadPosRankSum=-2.275;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:114,64:0.36:178
chr4	4190792	rs2920255	A	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=27.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	4199634	rs2916414	A	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	4204299	rs2920182	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	4228424	.	T	C	64.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-3.474;QD=4.63;ReadPosRankSum=-2.908;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr4	4228425	rs78657691	T	C	64.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-3.474;QD=4.63;ReadPosRankSum=-2.908;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr4	4239516	rs62286913	C	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.22;MQRankSum=-4.469;QD=20.76;ReadPosRankSum=2.694;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr4	4239539	rs62286914	C	T	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr4	4239587	rs62286915	G	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=13.237;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-5.867;QD=3.06;ReadPosRankSum=-2.763;SOR=1.851;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr4	4249483	rs2916466	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	4249884	rs6854167	G	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	4275280	rs2272741	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	4275287	rs2272740	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	4276021	rs12639962	C	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	4276132	rs7376390	T	C	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	4322275	rs873923	A	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	4411559	rs7655690	T	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	4417899	rs7678778	G	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	4417920	.	G	A	674.77	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	4425422	rs10675705	C	CAG	375.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	4436436	rs6825715	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	4459301	rs62289812	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	4862125	rs149370601	AGGGGGCCGGGT	A	916	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:2,23:0.92:25
chr4	4864940	rs2229262	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	5016841	rs6847131	G	T	170.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	5018989	rs113320909	C	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	5021008	rs67468870	C	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=25.02;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	5128650	rs895679	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.74;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	5128726	rs17882862	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	5333137	rs41268635	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	5418539	rs168985	C	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	5448283	rs150851938	C	CA	262.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.577;QD=16.42;ReadPosRankSum=-0.668;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	5448429	rs3733182	A	G	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	5469916	rs41268643	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	5500511	rs13116133	A	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	5576270	rs16837475	G	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	5577884	rs6840591	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	5617119	rs373232667	GA	G	1159.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	5617295	rs10025164	T	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	5617369	rs10032860	G	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	5620515	rs28379106	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	5624530	rs60121553	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	5624670	rs730469	T	C	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	5624704	rs73198153	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	5624799	rs73198155	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	5627471	rs6850875	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr4	5630327	rs112747818	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	5630470	rs370246795	T	TAA	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.41;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	5665027	rs73798106	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	5686924	rs957727	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	5686967	rs957726	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	5687263	rs998092	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	5690915	rs74930168	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	5710189	rs6820907	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	5713312	rs2276874	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	5734882	rs73795032	C	G	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	5735189	rs16837599	C	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	5743509	rs6446393	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	5747072	rs2286343	C	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	5749784	rs4689312	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	5749804	rs4689311	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	5749814	rs4688964	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	5749904	rs4688963	T	C	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	5749961	rs4688962	G	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	5750084	rs4688961	A	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	5755373	rs7660793	G	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	5755529	rs116952023	A	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=42.99;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	5755542	rs2302075	C	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=39.00;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	5795412	rs11737221	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	5803633	rs2306400	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	5803669	rs1031919	T	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	5803829	rs3214940	AC	A	2229.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	5803903	rs2306399	A	G	1689.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	5803903	.	AC	GT	593	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=27;MQ=60.0;NF=9;NR=11;PP=593;QD=32.3233937431;SC=GATGTCAGATACTGTGAATTT;SbPval=0.58;Source=Platypus;TC=20;TCF=9;TCR=11;TR=20;WE=5803912;WS=5803893;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	5803904	rs1031918	C	T	1689.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.94;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	5806366	rs1552057	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	5812195	rs2279250	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	5830414	rs6818391	T	C	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	5837871	rs3815264	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	5838513	rs12331	C	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	5841350	rs16837723	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=25.18;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	5841423	rs71640227	T	TAAAC	1343.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=43.35;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	5863032	rs13130069	G	A	416.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=1.876;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	5925186	rs4348041	G	A	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	5975538	rs16837960	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr4	5977462	rs4689291	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	5977553	rs4689290	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	5977566	rs4689289	C	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	5982158	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.623;QD=6.72;ReadPosRankSum=-1.441;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr4	5990110	rs4689287	C	A	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	5990339	rs6845455	G	A	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	5990551	rs58136927	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	5990599	rs751240	T	C	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	5990791	rs2016083	A	G	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	5990868	rs143859826	CCT	C	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.978;QD=2.81;ReadPosRankSum=1.917;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chr4	5991384	rs4234711	T	C	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	5991476	rs4266238	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	6050759	rs60586285	T	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	6293802	rs7655482	T	C	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	6302519	rs1801212	G	A	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr4	6325018	rs3796402	A	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	6325086	rs3796403	G	A	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	6374189	rs6837903	A	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=24.99;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	6374230	rs35520578	C	CA	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	6377530	rs4688997	C	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	6377534	rs4688998	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	6377713	rs4234738	G	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	6384369	rs6845693	C	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=23.24;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	6415558	rs4689437	CC	AG	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr4	6415585	rs10213664	T	C	2112.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.01;ReadPosRankSum=0.541;SOR=0.594;set=HC	GT:AD:AF:DP	1/1:3,85:0.97:88
chr4	6415618	rs4689000	G	A	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:4,130:0.97:134
chr4	6415799	rs202049068	GTGTA	G	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	6578487	rs4689485	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	6594827	rs10937747	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	6596360	rs2301795	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	6600012	rs2301790	A	G	2010.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=0.256;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,80:0.98:82
chr4	6602255	rs2301789	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	6602378	rs73796294	G	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	6602516	rs12639813	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	6606864	rs2301788	A	G	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	6611813	rs4689487	T	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	6616151	rs111952906	C	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	6619165	rs4689489	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	6623032	rs4234768	G	T	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	6676303	.	G	C	50.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	6698500	rs113431497	C	CTGAGCCTGAA	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	6698667	rs11734898	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	6698706	rs11733989	A	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	6873357	rs376371917	C	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	6882675	rs148617528	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	6925226	rs141012176	C	T	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	6956134	rs11732898	T	C	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	6996129	rs3892490	G	A	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	7000680	rs34221933	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	7006541	rs2301819	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	7016136	rs189905218	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	7044357	rs871133	A	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	7064213	rs60458218	A	AGATT	386.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.016;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr4	7064214	rs9291128	T	G	68.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.523;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr4	7064217	.	T	A	1042	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.73;ReadPosRankSum=-1.587;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr4	7312145	rs11942816	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	7435379	rs4689746	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	7461826	rs10655902	C	CCCA	5649.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	7640312	rs187209736	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	7663167	rs2285788	A	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	7663190	rs192603078	T	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	7684641	rs4689820	C	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	7684661	rs4689821	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	7684662	rs4689822	T	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	7691193	rs929264	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	7698873	rs114678824	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr4	7698890	rs78864358	C	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr4	7705796	rs28706846	G	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	7714490	rs4689833	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	7714640	rs2285783	C	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	7716932	rs6816604	T	C	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr4	7728658	rs2301745	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	7736128	rs13105903	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	7736455	rs6843811	G	A	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr4	7802125	rs76120138	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	7817698	rs35907552	GT	G	898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-1.011;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr4	7820727	rs4447865	T	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	7968936	rs13137347	G	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	7968953	rs28409515	G	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	7985456	.	GGGGCCCTGA	G	414.73	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	7986357	rs73090391	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	8006988	rs77249161	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	8009759	rs17180256	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	8010642	rs184838061	T	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	8010824	rs34237203	T	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr4	8021478	rs34327175	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	8021592	rs13131680	A	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	8062638	rs6853485	A	C	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	8062689	rs6811028	T	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	8062871	rs6853901	A	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	8211624	rs1712316	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	8214636	rs1712287	T	C	99.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	8216391	rs1618403	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	8221058	rs4696782	G	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	8224414	rs113477900	T	TGTC	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=39.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	8228632	rs1678300	A	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	8228731	rs1281145	T	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	8228894	rs1292647	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr4	8229218	rs1281146	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	8229326	rs1281147	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	8237096	rs1678260	G	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	8242466	rs1281103	A	G	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	8284084	rs4696789	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	8288442	.	T	G	2763.77	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	8288521	rs7692567	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	8288581	rs7678398	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	8288612	rs7678420	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	8293974	rs4235258	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8294196	rs13130633	C	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	8294217	.	C	T	532.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8304038	rs4696797	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8304097	rs4696798	G	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	8306028	rs4696801	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr4	8306091	rs4696802	T	C	376.10	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr4	8358361	rs3733532	G	A	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	8372856	rs73085870	C	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	8376402	rs7700122	T	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	8383167	rs2293230	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	8390859	rs13136987	G	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	8391049	rs2242483	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	8396580	rs6852350	A	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	8454639	rs1880024	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	8456701	rs2002860	C	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8473050	rs2631768	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	8594574	rs2302583	T	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	8594815	rs4411969	T	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	8601298	rs11723641	G	A	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	8601381	rs7671320	A	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	8602793	rs4299567	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8602816	rs4594711	A	G	604.10	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	8602884	rs4301095	T	C	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	8602935	rs4431213	A	G	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	8605687	rs79175986	C	G	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	8605860	rs28421391	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	8607587	rs4696703	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	8612814	.	T	TTCAC	5572.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.221;QD=42.22;ReadPosRankSum=0.299;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:4,128:0.97:132
chr4	8613026	rs3796727	G	A	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	8613895	rs28417411	G	T	789.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=-0.570;SOR=0.540;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr4	8613917	rs12511563	CG	GT	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	8613961	rs13120023	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	8616179	rs7378066	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	8616224	rs9991535	C	T	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	8616301	rs140268089	AG	A	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	8620325	rs4696872	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	8621194	rs28514374	A	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.04;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	8869587	rs13303225	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	8872977	rs61745347	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	9370646	rs200900174	G	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=40.67;MQRankSum=-0.875;QD=6.34;ReadPosRankSum=0.875;SOR=3.229;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	9370690	rs10032245	G	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.95;QD=26.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	9370897	rs6857841	C	T	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	9783905	rs2227848	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-8.104;QD=1.24;ReadPosRankSum=-1.747;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr4	9783917	rs76288744	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-8.660;QD=1.14;ReadPosRankSum=0.465;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr4	9922130	rs3733591	C	T	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr4	9982330	rs13125646	A	G	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	9987226	rs3733590	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	9987324	rs3733589	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	9998493	rs13113918	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	9998605	rs28592748	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	10022839	rs2276963	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	10086015	rs2241474	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	10086188	rs2241475	T	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr4	10090178	rs4235349	T	C	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	10100812	rs2241485	A	G	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	10105739	rs3756224	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	10118377	rs11557743	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	10445497	rs149028402	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	10446385	rs9291410	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	10446906	rs10016022	A	G	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	10447640	rs10016702	A	G	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	10502937	rs2903960	T	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	10509699	rs2868941	T	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	10525490	rs75424244	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	10525686	rs199562553	AAAAG	A	1033.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.565;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.35;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr4	10525752	rs79689057	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	10529520	rs7657102	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	10529766	rs73809629	G	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	10529803	rs73809630	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	10533667	rs73809634	T	C	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	10543616	rs11440483	G	GA	250.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	13370308	rs10003958	T	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	13371378	rs11930851	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	13461440	rs73819876	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	13462520	rs73817403	CG	AC	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	13480939	rs28377244	T	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	13480969	rs112994371	CAAA	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	13529990	rs59341143	G	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	13530824	rs10034452	T	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	13543677	rs111283169	C	G	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	13546048	rs138460070	G	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	13548796	rs2080023	T	G	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	13578405	.	A	G	25	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=4;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=25;QD=29.8856062736;SC=ACCCAGAGCAATTTTCAGATG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=13578413;WS=13578395;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	13593336	rs758975	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	13628020	.	C	G	1225.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	15480225	rs9993580	A	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	15482322	rs1861049	C	T	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr4	15482477	rs10000250	A	G	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	15482668	rs6836616	A	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	15482809	rs6810461	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr4	15482904	rs28662094	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	15517756	rs58218122	AT	A	233.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	15530091	rs73798607	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	15538744	rs1558572	T	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	15539498	rs1861044	A	G	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr4	15552679	.	CCAGA	C	232.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	15568992	rs13121363	T	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	15569146	rs13116304	A	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	15575718	rs4280723	C	G	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	15587897	rs6832789	A	T	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	15602773	rs80080596	C	CTTA	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	15603069	rs1134634	G	C	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	15688559	rs6832031	A	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	15690233	rs6449160	C	A	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	15707250	rs6840615	A	G	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	15717321	rs3213710	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	15737863	rs4273468	G	A	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	15737890	rs4613561	T	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	15737937	rs4538475	A	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	15739488	rs4283655	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	15818391	rs3796868	G	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	15849986	rs3796863	G	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	15937731	rs2072313	T	C	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr4	15938163	rs144420787	A	G	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	15964485	rs758329	G	A	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr4	15964573	rs758328	A	G	9508.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	15977572	rs11734657	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	15977823	rs3796860	A	C	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=1.413;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	15977828	rs3796859	C	G	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	15981885	rs3841512	G	GA	1051.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=2.511;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	15981926	.	T	TA	1331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=5.985;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=2.430;QD=6.97;ReadPosRankSum=0.303;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:79,112:0.59:191
chr4	15986042	rs7675574	G	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	15986113	rs7659341	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15987509	.	T	TTTAAG	95.37	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	654.73	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=218.24;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	15989191	rs2191004	C	T	542.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=1.212;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr4	15989500	rs34264338	C	CTT	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.72;ReadPosRankSum=1.235;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr4	15991275	rs2240685	G	A	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	16000136	rs201165379	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	16002050	rs6449212	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	16014736	rs16892775	C	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	16017898	rs2286458	T	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	16017960	rs2286457	A	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	16026983	rs7663999	T	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr4	16164489	rs7359	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	16172171	rs73798856	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	16172181	rs1662654	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	16192413	rs7666361	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	16192478	rs73798867	A	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	16198378	rs10939652	A	G	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	16215451	rs6823623	C	T	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	16227781	rs3749543	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	16513748	rs6824949	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	16590588	rs11945652	G	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	16597280	rs1506462	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	16675898	rs4698505	C	A	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	16753863	rs283027	A	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	17492145	rs731437	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	17494054	rs2597772	A	G	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	17511595	rs10020171	A	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	17511634	rs10030250	G	A	1448.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	17513458	rs2244804	A	G	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr4	17513724	rs2244788	G	C	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	17513757	rs67496406	CG	C	2295.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	17517099	rs1551091	A	G	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	17517242	rs28382333	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	17583348	rs740887	A	G	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	17585091	rs16895245	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	17585281	rs71709415	TAGG	T	7610.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	17586703	rs3733576	T	C	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	17590505	rs12507986	C	T	11069.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr4	17590686	rs35467396	AT	A	988.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=8.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=1.277;SOR=1.785;set=HC	GT:AD:AF:DP	1/1:12,70:0.85:82
chr4	17600132	rs7697250	C	T	14599.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr4	17634213	rs6825562	A	G	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr4	17636519	rs72522118	CAATG	C	392.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	17636666	rs16895365	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr4	17638178	rs11944484	C	T	7878.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr4	17640745	rs9991019	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	17660051	rs2302392	G	A	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	17660242	rs2302390	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	17689901	rs11306510	AT	A	321.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.973;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr4	17689974	rs4698646	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	17695206	rs3733581	C	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	17706928	rs13139898	T	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	17711076	rs3733583	T	C	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr4	17782705	rs35662238	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	17805379	rs7690457	G	A	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr4	17812528	rs11941723	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	17812615	rs2074974	A	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	17812796	rs16895792	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	17841948	rs2286534	T	A	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	17844029	rs17585261	G	A	8951.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr4	17885296	rs139656197	A	AAC	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-2.618;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	20256722	rs1323066	G	A	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:6,157:0.96:163
chr4	20270600	rs2196476	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	20490710	rs543593	T	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	20492417	rs7695303	G	T	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr4	20520993	rs519813	T	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	20525273	rs58213645	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	20526985	rs146437952	C	CAT	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	20541005	rs35993588	AG	A	9261.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	20541008	rs3842004	C	A	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	20547838	rs2292439	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	20555358	rs3830489	T	TTG	1536.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr4	20620642	rs186108791	C	T	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	20620683	rs1379659	G	A	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	20709238	rs35495469	G	GA	927.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	20714642	rs3764964	T	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	20714924	rs12331966	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	20715189	rs73240290	A	G	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr4	20715244	rs62410126	A	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	20726537	rs10654905	C	CTT	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	20733708	rs111474115	C	CA	2196.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	20734171	rs6812257	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	20734176	rs6811933	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.06;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	20736416	rs112956417	A	AAAAC	1619.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	20751278	rs2322688	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	20760644	rs57740160	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	20760683	rs17623902	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	20884202	.	G	GA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.035;QD=0.97;ReadPosRankSum=1.329;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:117,28:0.19:145
chr4	20884482	rs57696441	G	GA	570.74	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr4	21305692	rs6448044	C	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=11.759;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=0.865;QD=1.75;ReadPosRankSum=-3.081;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr4	21698939	.	TAAAAAAAAAAAA	T	4631.73	.	AC=2;AF=1.00;AN=2;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.60;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:2,118:0.98:120
chr4	21764761	rs717531	C	T	16364.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr4	21950259	rs6448102	A	G	21290.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:1,850:1.00:851
chr4	22404391	rs61736468	G	A	11580.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=-1.279;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:2,461:1.00:463
chr4	22404443	rs3733312	C	T	9714.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr4	22404455	rs3733311	T	C	8330.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr4	22416076	rs9992521	C	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	22444692	rs10018144	C	T	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	22444854	rs73800959	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	22456381	rs10003859	T	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	22456431	rs10003883	T	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	22475275	.	TAG	T	25	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=2;MGOF=61;MMLQ=28;MQ=60.0;NF=0;NR=1;PP=25;QD=51.0;SC=TAAAAAATGTTAGAAAAACTC;SbPval=1.0;Source=Platypus;TC=11;TCF=4;TCR=7;TR=1;WE=22475284;WS=22475265;set=Platypus	GT:AD:AF:DP	1/0:10,1:0.09:11
chr4	22715639	rs1963996	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	22820504	rs358231	A	T	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr4	23815522	rs3755863	C	T	15953.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr4	23815662	rs8192678	C	T	18491.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr4	23815924	rs2970847	T	C	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	23816242	.	TAA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=-1.260;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	23886323	rs2946385	G	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr4	24550431	rs35768649	T	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	24809884	rs1019229	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	24896580	rs59614850	C	T	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr4	25005193	rs2232028	G	A	8771.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr4	25030312	rs10021870	G	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	25160732	rs34423002	T	TA	662.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.730;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.604;QD=2.68;ReadPosRankSum=1.046;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:168,79:0.32:247
chr4	25315637	rs199972003	C	CT	1489.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.300;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:32,104:0.76:136
chr4	25363901	rs315675	T	A	11507.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr4	25366059	.	G	GT	811.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.060;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:5,45:0.90:50
chr4	25370627	rs315690	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	25370962	rs315689	A	T	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	25382216	rs315676	C	G	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	25391584	rs186408	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	25407356	rs3756202	A	G	11040.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr4	25419283	rs9174	T	C	17732.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr4	25674905	.	TCACA	T	1371.73	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	25674911	.	G	GAGGGA	1372.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	25674913	rs62409436	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	25678199	rs6448389	A	G	13394.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr4	25758580	rs4401441	G	A	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	25759079	rs11321805	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=-0.456;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr4	25759109	rs11352729	CT	C	649.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,45:0.87:52
chr4	25759298	rs2286867	C	G	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	25766891	rs9996338	C	A	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	25767183	rs4697616	G	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	25780599	rs13121073	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	25780891	rs4697619	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	25819991	rs11281441	A	AAGAAGAGGCC	4542.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	25831558	rs35501267	G	GA	653.74	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:4,33:0.89:37
chr4	25836759	rs10007181	T	C	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	25837082	rs13434986	T	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	25849363	rs2437	C	T	18287.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr4	26407729	rs6847065	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	26431821	rs3214341	GA	G	188.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	26491111	rs1800857	A	G	14298.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr4	26491117	rs1800855	A	T	13719.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr4	26862546	rs5856957	CT	C	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=19.638;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.009;QD=8.69;ReadPosRankSum=1.009;SOR=3.730;set=HC	GT:AD:AF:DP	0/1:20,72:0.78:92
chr4	26862830	rs369465468	G	T	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	27000814	.	A	AAT	2787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.241;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.000;QD=20.06;ReadPosRankSum=0.136;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:11,128:0.92:139
chr4	27004011	rs10028164	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	27004490	rs5856961	T	TA	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	27009062	.	C	CT	333.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-0.747;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr4	27010020	rs186946268	T	C	8064.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr4	27022800	rs10031905	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	27162400	rs190038617	G	T	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	30132766	rs34540632	ATG	A	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.085;QD=2.23;ReadPosRankSum=0.963;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:196,46:0.19:242
chr4	30222329	rs113400372	T	TATAG	1051.74	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr4	30341486	.	G	GGTGTGTGT	119.73	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,12:0.16:73
chr4	30341506	.	TGA	T	1540.73	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:12,59:0.83:71
chr4	30341514	rs28434177	C	T	1548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.616;QD=21.81;ReadPosRankSum=-1.582;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:12,59:0.83:71
chr4	30341516	rs72354606	TGTGA	T	125.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.642;QD=1.65;ReadPosRankSum=1.867;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr4	30341520	.	A	AGTGTGCGT	1538.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:12,59:0.83:71
chr4	30481010	.	CAG	C	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=524;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.979;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:437,62:0.12:499
chr4	30724178	rs62000978	G	A	22674.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.693;set=HC	GT:AD:AF:DP	1/1:0,846:1.00:846
chr4	30976765	.	TTGTG	T,TTG	1443.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.317;QD=24.06;ReadPosRankSum=-1.037;SOR=0.502;set=HC	GT:AD:AF:DP	1/2:3,21,36:0.35,0.60:60
chr4	31031755	rs139430988	T	TTGTGTGTGTGCA	9386.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.716;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.082;QD=46.93;ReadPosRankSum=-1.377;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:1,199:0.99:200
chr4	31107642	rs5857222	A	AT	457.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.08;QD=41.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	31107643	rs5857223	A	AT	457.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.08;QD=41.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	31107645	rs4993058	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.08;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	31107765	rs4580617	G	C	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	31116254	rs34203962	AAC	A	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-2.083;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr4	31116375	rs10006845	A	G	1279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.085;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.69;ReadPosRankSum=-0.528;SOR=0.167;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr4	36081878	rs4833069	C	T	14490.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr4	36083929	.	A	AAC	3763.73	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	36109409	rs7688562	C	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	36123024	rs1397423	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	36130099	rs6148397	T	TACAC,TACACAC	2205.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=59;set=Intersection	GT:AF:DP	1/2:0.28,0.72:50
chr4	36130375	rs5857473	TA	T	2320.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	36149025	rs1567483	G	A	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	36149113	rs1567484	C	T	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	36160340	rs1546495	G	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	36160603	rs17457286	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	36162273	rs11431961	C	CA	444	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr4	36162923	rs2271330	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	36211914	rs4394022	C	A	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	36258197	rs7686575	T	C	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	36292018	rs1995319	T	A	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr4	36310049	rs12507599	C	T	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	36317750	rs59313146	G	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr4	36317768	rs57623676	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr4	36317832	rs58707171	A	C	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	36317965	rs60640167	T	C	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	36340984	rs66614478	C	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	36428048	rs6841938	G	A	9680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=-0.105;QD=25.34;ReadPosRankSum=-1.079;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:2,380:0.99:382
chr4	36428174	rs114195401	G	A	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr4	37247021	rs892825	C	T	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	37592674	rs937941	T	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	37636341	rs11730085	C	T	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	37636750	rs2276943	T	G	12052.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr4	37651155	rs2292298	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	37666995	rs1221653	T	C	11421.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr4	37831492	.	A	ATT	727.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	37831494	rs200569700	A	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	37831850	rs2911907	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	37831862	rs10020910	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	37831867	rs10010767	A	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	37836158	.	C	T	612.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	37836302	rs3752683	T	C	9524.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr4	37839366	rs62300673	A	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	37841430	rs2261414	C	T	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	37841942	rs2714559	T	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	37848455	rs2290742	T	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	37848535	rs28544509	T	G	2041.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.615;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-0.316;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:12,114:0.90:126
chr4	37848949	rs28662352	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	37851856	rs10001580	A	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	37962186	rs6811863	G	C	9827.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,373:1.00:374
chr4	38045965	rs76368862	C	T	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr4	38053788	.	CTG	C	311.73	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:69,21:0.23:90
chr4	38117281	rs73134647	C	T	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr4	38628540	rs168086	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	38628725	rs62294474	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=25.92;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	38798648	rs5743618	C	A	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	38798935	rs5743614	C	T	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.05;QD=26.56;SOR=1.113;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	38799710	rs4833095	T	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	38829832	rs3775073	T	C	12234.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr4	38830012	rs3821985	G	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	38830350	rs5743810	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	38869909	rs7686863	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr4	38907022	rs73236670	AA	TT	917.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.045;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=0.878;SOR=0.169;set=HC	GT:AD:AF:DP	1/1:4,42:0.91:46
chr4	38916465	rs4563504	A	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	38932922	rs2291493	C	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	38937372	rs2271031	T	C	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	38942697	rs11398065	C	CT	844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.728;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:17,59:0.78:76
chr4	38944976	rs34903665	A	AT	3373.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	38945217	rs10011235	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	38988132	rs75837227	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	38995374	rs10212770	T	C	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	39034066	rs56090217	TA	T	741.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.686;QD=15.45;ReadPosRankSum=0.059;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr4	39034116	rs1430366	C	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=25.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	39046586	rs111344840	CA	C	1334.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	39064126	rs2711942	G	C	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	39064162	rs2711941	A	C	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	39065091	rs2711940	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	39094738	rs2566149	G	A	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	39109428	rs2711939	T	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	39184169	rs60800612	A	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	39187519	rs139814512	G	GT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.399;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:104,26:0.20:130
chr4	39187522	rs6839511	G	T	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.412;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:26,107:0.80:133
chr4	39188098	.	CAAAAAAA	C,CAA	675.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.51;QD=39.75;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,7,10:0.41,0.59:17
chr4	39191516	rs28699614	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	39205365	rs1451817	C	T	9564.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr4	39216393	.	A	AT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.197;QD=3.69;ReadPosRankSum=0.685;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr4	39226447	.	TAG	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=1.611;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr4	39226486	.	AT	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.938;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr4	39226729	rs73808996	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	39233719	rs113407055	T	TA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.284;QD=3.74;ReadPosRankSum=0.871;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr4	39242111	rs9998591	C	A	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	39257642	rs16995195	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	39267749	rs16995209	G	A	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	39276623	rs11096989	A	AG	5905.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	39279724	rs12648082	T	C	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	39301572	rs6531708	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	39301600	rs2066785	T	TA	2325.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	39301605	rs2066788	G	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	39302056	rs2066787	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	39304918	.	GA	G	231.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	39306504	rs2066792	C	G	21200.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr4	39308187	rs2066789	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	39353122	rs4975007	C	T	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	39448542	rs7685429	C	G	20235.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr4	39456635	rs10025155	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	39457857	rs1015450	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.76;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	39457870	rs3216720	T	TG	2814.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=39.09;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	39458051	rs2125313	A	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	39459724	rs2687958	T	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	39460352	rs11550000	C	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	39469416	rs9990499	C	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	39472946	rs67611743	CT	C	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=7.628;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.732;QD=2.21;ReadPosRankSum=2.100;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:137,74:0.35:211
chr4	39474868	rs749915	G	A	7697.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr4	39478832	rs1048140	G	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	39501722	rs35903165	CA	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=1.595;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr4	39507524	rs11290546	TA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.972;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.451;QD=1.89;ReadPosRankSum=-0.138;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr4	39511530	rs71645104	T	TA,TAA	3185.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.512;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-0.470;SOR=1.089;set=HC	GT:AD:AF:DP	1/2:14,120,44:0.67,0.25:178
chr4	39512571	rs7668172	A	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	39528752	rs4975020	G	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	39557873	rs192047057	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	39739236	rs74701834	T	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	39747536	rs302931	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	39757480	rs11389468	A	AT	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=37.48;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	39776616	rs463918	G	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	39779233	rs3839129	AT	A	8452.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	39924372	.	TA	T	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.100;QD=10.25;ReadPosRankSum=2.571;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr4	40045727	rs1704151	T	G	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	40108750	rs1704154	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	40115239	rs4974962	A	T	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	40121562	rs794001	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	40123997	.	A	AT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.773;QD=1.14;ReadPosRankSum=1.693;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr4	40337908	rs10022491	T	C	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	40355909	rs73146142	A	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	40356422	rs10009228	A	G	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr4	40428010	rs278981	T	C	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	40438576	rs2307046	A	G	15869.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr4	40438957	rs56769284	CG	C	2235.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.654;QD=14.42;ReadPosRankSum=0.917;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:28,127:0.82:155
chr4	40438958	rs10034961	G	C	128.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.649;QD=0.83;ReadPosRankSum=-0.450;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:129,26:0.17:155
chr4	40438961	.	A	C	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=17.702;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.712;QD=14.12;ReadPosRankSum=1.499;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:32,123:0.79:155
chr4	40778146	rs2465570	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	40778162	rs2437323	T	G	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	40788544	rs2953325	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	40809207	rs113167696	GA	G	1703.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	40810747	rs2261167	A	G	14730.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr4	40818109	.	C	T	3957.77	.	AC=2;AF=1.00;AN=2;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	40825819	rs3841555	TA	T	3896.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	40844199	rs1865605	T	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	40895552	rs6447505	G	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	40937219	rs5857759	GA	G	644.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-0.827;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:6,42:0.88:48
chr4	40947139	rs12649306	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	41259238	rs368176539	C	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	41526250	rs10014221	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	41526503	rs4266323	C	T	14982.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr4	41629036	.	GGTGT	G,GGT	1759.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.437;QD=26.26;ReadPosRankSum=-1.550;SOR=0.749;set=HC	GT:AD:AF:DP	1/2:3,22,42:0.33,0.63:67
chr4	41631718	rs28622470	C	T	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr4	41631832	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.973;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr4	41633094	rs201542942	G	T	1741.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.576;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.56;ReadPosRankSum=2.266;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr4	41633095	.	T	G	1741.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.602;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.52;ReadPosRankSum=2.052;SOR=1.267;set=HC	GT:AD:AF:DP	1/1:3,56:0.95:59
chr4	41633322	rs73135482	C	A	15546.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr4	41634777	rs4590080	G	C	13233.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr4	41635034	rs7657178	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	41635833	rs10015266	A	G	11710.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr4	41635856	rs10017698	T	G	8577.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	41646651	rs2304647	G	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	41646810	rs16853403	G	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	41652293	rs2289338	C	G	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	41652442	rs16853408	G	A	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	41663621	rs17528897	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	41663798	rs28510221	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	41668465	rs17444537	C	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	41672667	rs16853445	T	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	41673604	rs11734372	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	41683212	rs6816179	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	41684580	rs61271673	C	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	41687911	rs2304652	A	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	41689974	rs1371297	A	G	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	41691655	rs16853488	A	G	18231.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr4	41699220	rs10027910	C	T	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	41748511	rs2196822	T	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	41749265	rs28647582	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	41749668	rs6811325	C	T	14970.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:2,580:1.00:582
chr4	42020142	rs2581423	A	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	42025207	rs3213767	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	42025284	rs4861153	A	G	5592.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=-0.936;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:2,222:0.99:224
chr4	42121873	rs7684103	A	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	42400109	rs3103220	C	T	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr4	42546028	rs79971589	T	C	13074.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr4	42550967	rs77698406	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	42553390	rs140647475	TTTAA	T	364.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	42571074	rs6845603	A	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=2.157;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	42582047	rs6447171	A	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	42592744	rs28756164	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	42596461	rs77305935	TAC	T	348.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	42602606	rs6819419	A	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	42617935	rs10003317	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	42618021	rs113477520	T	TA	2980.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	42618138	rs10033628	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.51;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	42626659	rs11306052	GA	G	809.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.636;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:9,54:0.86:63
chr4	42627805	rs1460358	A	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	42639186	rs898500	A	G	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	44176801	rs16856786	C	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	44295839	rs13117500	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	44295943	rs13145563	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	44626641	rs60959366	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	44626846	rs6838327	G	A	9507.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr4	44631587	rs6813809	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	44652187	rs1113098	C	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	44684438	rs2306993	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	44684455	rs13117025	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	44684507	rs9291245	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	44685224	rs112232487	T	TA	682.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.24;QD=42.67;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	44685225	rs58659516	T	A	691.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.24;QD=43.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	44691795	rs11373408	T	TA	1021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.488;QD=9.46;ReadPosRankSum=0.485;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:34,74:0.69:108
chr4	44696538	rs12641137	C	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	44699585	rs73815518	G	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	44709695	rs1491302	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	47033770	rs72416056	TCG	T	3983.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:23,152:0.87:175
chr4	47034075	rs45460902	G	A	3601.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=8.417;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.129;QD=25.91;ReadPosRankSum=-2.188;SOR=0.072;set=HC	GT:AD:AF:DP	1/1:4,135:0.97:139
chr4	47034102	rs369105252	AAG	A	954.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.261;QD=25.80;ReadPosRankSum=1.763;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr4	47034144	.	G	GACAC	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.77;ReadPosRankSum=0.755;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	47034145	rs73247629	G	A	516.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	47034626	rs41309288	C	G	18522.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,723:1.00:723
chr4	47322190	rs4482737	T	C	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	47322219	rs6284	C	A	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	47524997	rs11368204	CT	C	856.14	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:7,50:0.88:57
chr4	47525009	rs5858076	T	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.35;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	47538360	rs13152689	T	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	47560386	rs4298115	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	47561141	rs13106043	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	47561179	rs11730590	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	47578971	rs16851681	G	A	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	47582387	rs2351791	A	C	16554.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr4	47589299	rs2351790	C	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	47592997	rs71199986	G	GT	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	47593008	rs1316781	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	47593283	rs4145944	G	C	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	47625811	rs3215139	TA	T	3437.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	47626034	rs1344122	C	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	47667064	rs11934749	T	C	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	47886329	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.202;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr4	47916346	rs6826122	C	G	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	47944029	rs10709670	CA	C	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.012;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:63,72:0.53:135
chr4	47945455	rs6819506	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	47951945	rs1972883	G	A	8306.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr4	47953515	rs3845160	A	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	47973119	.	TA	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=2.255;QD=1.72;ReadPosRankSum=-0.835;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr4	47973171	rs2053407	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=24.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	47973222	rs7693852	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=41.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	47973234	rs7677851	T	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=46.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	48037926	rs13116684	A	G	18777.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr4	48082208	rs2352590	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	48095988	rs1507916	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	48097180	rs34518985	G	T	4742.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.657;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=1.529;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,187:0.99:188
chr4	48178024	rs73814679	A	G	9470.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,369:1.00:370
chr4	48372085	rs1466631	T	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	48384499	rs6816010	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	48396496	rs4694894	C	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	48492213	rs10031120	C	T	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	48492434	rs10008444	G	C	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	48516970	rs7434721	C	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	48517352	rs7661515	C	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	48529683	.	TAA	T,TA	838.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQRankSum=0.836;QD=12.71;ReadPosRankSum=0.673;SOR=0.807;set=HC	GT:AD:AF:DP	1/2:9,16,41:0.24,0.62:66
chr4	48529733	rs4695385	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr4	48537603	rs3838234	T	TAC,TACAC	1188.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/2:0.39,0.58:36
chr4	48547041	rs952289	A	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	48558882	rs4694898	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	48565101	rs13138269	A	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	48577121	rs28558226	C	T	10142.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr4	48582836	rs4695390	A	T	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	48588742	rs34558821	C	T	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	48607938	rs2940319	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	48611149	rs2354348	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.75;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	48611153	rs776603	A	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	48611639	rs5858122	G	GA	301.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.616;QD=12.55;ReadPosRankSum=-0.071;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr4	48625204	.	T	TA	230	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.7489;HP=8;HapScore=3;MGOF=3;MMLQ=24;MQ=59.68;NF=0;NR=5;PP=230;QD=49.4;SC=CTCCTATGATTAAAAAAAACA;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=5;WE=48625221;WS=48625194;set=Platypus	GT:AD:AF:DP	1/0:18,5:0.22:23
chr4	48625212	.	AC	A	214	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=7;HapScore=3;MGOF=3;MMLQ=27;MQ=59.64;NF=0;NR=5;PP=214;QD=46.2;SC=ATTAAAAAAAACAAACATTAA;SbPval=1.0;Source=Platypus;TC=21;TCF=1;TCR=20;TR=5;WE=48625221;WS=48625194;set=Platypus	GT:AD:AF:DP	1/1:16,5:0.24:21
chr4	48625213	rs776579	C	A	698.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.859;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr4	48655635	rs776580	T	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	48655824	rs141132438	AAGCAGC	A	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	48683020	rs78817984	C	T	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	48851937	rs3761729	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	52714354	rs10673605	A	ATTTC	2617.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	52714511	rs6851073	C	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	52744145	rs3215145	T	TAGAC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	52752812	rs2271046	A	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	52753118	rs7665231	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	52765720	rs2271045	T	G	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	52928352	rs34989037	GT	G	326.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.475;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr4	52945799	rs7689145	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	52946161	rs7657148	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	52951213	rs10556262	CT	C	411.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.568;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr4	52960601	rs17084559	G	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	53495740	rs346006	C	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	53814492	rs2930105	C	T	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	53814500	rs2930106	C	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.38;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	53814878	rs167293	A	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	53822307	rs301093	A	G	10179.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr4	54876121	rs145864126	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.122;QD=2.14;ReadPosRankSum=-0.811;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr4	54876132	rs4437313	C	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=28.14;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	54966667	rs3194383	C	T	13012.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr4	54966830	rs13144341	G	A	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	54966919	rs1132998	T	C	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:3,325:0.99:328
chr4	54967214	rs6554148	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	54967709	rs2278142	C	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	55130078	rs2229307	T	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	55130154	rs2307049	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	55133726	rs4358459	T	G	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	55133936	rs28489067	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	55133959	rs28650939	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	55139771	rs35597368	T	C	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr4	55141055	rs1873778	A	G	7452.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	55143577	rs10028020	G	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	55151711	rs2412559	C	A	3845.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.436;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=1.028;SOR=0.554;set=HC	GT:AD:AF:DP	1/1:1,149:0.99:150
chr4	55152040	rs2228230	C	T	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr4	55153837	rs7695657	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	55154891	rs55732997	T	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr4	55156380	rs4864506	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	55161391	rs7685117	T	C	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	55599436	rs1008658	T	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	55946081	rs4421048	A	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	55948108	rs2412617	A	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	55955232	rs1531289	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	55956225	rs36114464	C	T	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	55961159	rs2219471	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	55961944	rs111574609	T	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	55971846	rs2305945	G	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	55974095	rs112865999	T	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	55976709	rs113121239	C	G	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr4	55980239	rs7692791	C	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	56235931	rs819268	C	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	56262374	rs1128141	A	G	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	56309992	rs3736544	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	56314750	.	T	C	119	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=4;MGOF=13;MMLQ=20;MQ=60.0;NF=4;NR=1;PP=119;QD=30.7542425094;SC=ATTATATATGTGCGCGCGCGC;SbPval=0.66;Source=Platypus;TC=5;TCF=4;TCR=1;TR=5;WE=56314779;WS=56314740;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	56319350	rs11240	C	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	56322244	rs10529254	TG	T	133.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	56734701	rs3213948	C	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	56736794	rs150749988	T	TTTTG	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	56763170	rs10014018	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	57176710	rs13123803	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	57176965	rs5858374	TT	CC	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.878;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr4	57180473	rs6823339	C	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	57180576	rs138358443	C	CGGAGCGGAGGGAGCGGAG	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.35;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	57180616	rs11723379	G	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	57180920	rs77927518	C	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	57181632	rs7672073	G	C	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr4	57193762	rs6826795	G	A	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57194329	rs11733474	G	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	57194460	rs6811153	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	57194525	rs6834736	C	G	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	57208955	rs9996468	A	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57215677	rs3796544	G	A	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	57219523	rs6554347	A	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	57219592	rs6554348	G	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	57237683	rs6554354	G	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	57261372	.	G	GAA	70	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	57261396	rs199711867	A	ATAAAGG	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.09;QD=61.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57269646	rs112538106	A	AAAAG	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	57270197	rs7661712	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	57270255	rs78254842	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	57270361	rs79620439	A	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	57273676	rs184502459	G	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	57273917	rs77145429	G	C	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	57276619	rs2139512	G	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57276723	rs75703220	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	57276846	rs114833088	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	57302015	rs77399495	A	T	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr4	57314413	rs28649329	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	57318289	rs114094388	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	57344738	rs116799047	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	57361444	rs10572954	AACTC	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57361477	rs6834809	A	C	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	57396992	rs79029109	G	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr4	57397050	rs28550555	A	C	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr4	57397082	rs28470886	T	C	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	57397157	rs73818121	G	C	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	57441567	rs4865125	G	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	57516468	rs7442219	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	57516896	rs4371677	G	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	57521972	rs144818228	GGCTCAGCC	G	2065.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	57522220	rs4626270	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	57523869	rs7693834	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	57524124	rs6857396	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57686657	rs812991	G	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	57687711	rs781543	T	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	57687719	rs781544	C	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	57687938	rs10024887	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	57797100	rs2227902	G	T	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr4	57797217	.	GGAGCTGTCTCCTCCCATGGAGGTGGTCCAGAAGGAGCCTGTTCAGATA	G	1104.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=38.09;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	57797236	.	G	C	52	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=23;MQ=55.64;NF=3;NR=3;PP=52;QD=14.4618687579;SC=TCCTCCCATGGAGGTGGTCCA;SbPval=0.62;Source=Platypus;TC=27;TCF=14;TCR=13;TR=6;WE=57797244;WS=57797226;set=Platypus	GT:AD:AF:DP	1/0:21,6:0.22:27
chr4	57797265	.	A	G	526	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=4;MMLQ=23;NF=7;NR=8;PP=526;QD=37.3847475031;SC=CTGTTCAGATAGAGCTGTCTC;SbPval=0.28;Source=Platypus;TC=24;TCF=14;TCR=10;TR=15;WE=57797273;set=Platypus	GT:AD:AF:DP	0/1:9,15:0.62:24
chr4	57797308	rs2227903	A	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	57830501	rs9996331	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	57843320	rs4865167	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	57845091	rs2276896	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	57881862	rs28719609	T	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	57883175	rs1718866	G	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	57887150	rs2271806	C	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	57889332	rs1718862	G	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	57889677	rs1056364	C	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	57898729	rs2271807	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	57899602	rs2271808	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57906918	rs3755904	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	57906986	rs3755906	A	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	57976025	rs114701478	G	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	62382943	rs335311	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	62383315	rs335312	G	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	62445246	rs10018746	T	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	62449316	rs3075153	GTA	G	1391.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	62453209	rs2172802	A	G	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	62542879	rs1391319	G	C	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	62542957	rs4860425	C	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	62598689	rs10434219	C	T	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	62599289	rs9312082	G	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	62758251	rs7691112	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	62775479	.	ATGTG	A	148	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.6253;HP=3;HapScore=2;MGOF=45;MMLQ=25;MQ=60.0;NF=0;NR=4;PP=148;QD=37.75;SC=GACCCTAATTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=62775490;WS=62775469;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr4	62778315	rs12503398	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	62800554	rs2305339	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	62800728	rs734644	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	62845388	rs1397547	G	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	62845490	rs1397548	A	G	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr4	65142710	rs1483713	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	65142835	rs1483712	G	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	65145955	rs1483711	T	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	65145966	rs5858871	T	TAA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	65146711	rs1483709	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	65147404	rs10001161	T	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	65165661	rs11935568	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	65180308	.	GGTGTGTGTGTGTGTGT	GGT,G	1656.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=59;set=Intersection	GT:AF:DP	1/1:0.98:43
chr4	66189755	rs77062137	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	66286088	rs6551921	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	66286100	rs6551922	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	66286414	rs6551923	T	C	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	66468046	rs5858973	TA	T	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	66509194	rs4343775	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	67142620	rs73239138	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	68214270	.	G	GAGGAAGGAAGGA	97.25	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	68357814	rs1497430	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	68360955	rs2646282	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	68374597	rs1056789	C	T	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=24.92;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	68374925	.	TACACACACAC	T	269	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=0.9998;HP=2;HapScore=2;MGOF=23;MMLQ=16;MQ=57.8;NF=0;NR=2;PP=269;QD=136.0;SC=CATATACACATACACACACAC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=68374942;WS=68374915;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr4	68376708	rs190255	T	C	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	68379624	rs722062	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	68380215	rs11250	G	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	68384008	rs355510	C	T	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	68396525	rs355477	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	68416393	rs11436062	T	TA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.828;QD=3.67;ReadPosRankSum=1.586;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr4	68496080	rs354866	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	68780253	rs1371933	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	68780399	rs1371932	A	G	10503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=0.188;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:2,420:1.00:422
chr4	68780512	rs10025303	C	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.97;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	68784774	rs353163	T	C	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	68788694	rs353159	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	68788719	rs2119382	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	68812283	rs11930532	C	T	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	68812444	.	T	TA	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.29;ReadPosRankSum=1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	68829004	rs10518051	A	G	9587.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr4	68904637	rs6552141	A	C	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.55;QD=26.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	68904662	rs6814713	G	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	68919566	rs7670735	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	68934515	rs35687346	A	G	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	68935869	rs75244170	C	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	68938007	rs77986705	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	68938185	rs1438391	C	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	68938225	rs5859116	T	TA	412.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	68956422	rs57121360	T	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	68956498	rs13115830	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	68964818	rs75301633	C	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	69057335	rs75202564	T	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	69094575	rs2319796	T	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	69097150	rs5859125	TA	T	875.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	69098006	rs6552175	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	69100137	rs35624784	G	GA	641.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	69962774	rs60103519	C	T	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	69964180	rs7439326	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	69964209	rs7438244	A	G	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	69964234	rs34182209	C	CT	2316.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:18,124:0.87:142
chr4	69964271	rs28365062	A	G	5575.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	69964337	rs7438284	A	T	9457.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.40;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	69964337	.	AT	TC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=28;MMLQ=27;MQ=59.48;NF=38;NR=67;PP=2947;QD=20;SC=TTCAGTTTCCATATCCACTCT;SbPval=0.56;Source=Platypus;TC=106;TCF=39;TCR=67;TR=105;WE=69964346;WS=69964327;set=Platypus	GT:AD:AF:DP	1/1:1,105:0.99:106
chr4	69964338	rs7439366	T	C	9457.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.40;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	69972777	rs5013211	G	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	69972949	rs4292394	C	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=44.09;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	69972952	rs4348159	C	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=45.28;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	69978554	rs57075995	C	CA	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	70079975	rs7697037	A	G	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,272:1.00:273
chr4	70283900	.	C	T	2700.77	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	70283908	rs2642841	T	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	70288829	rs149235693	G	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.55;QD=29.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	70288954	rs2736507	C	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.08;QD=22.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	70288981	rs2736505	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.55;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	70346711	rs28679647	G	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	70352164	rs41297427	A	AATTATC	286.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	70355211	rs1845555	T	C	851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;MQRankSum=-0.119;QD=23.02;ReadPosRankSum=-0.738;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr4	70355380	rs28542932	T	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	70391600	rs112259104	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	70455478	rs2288741	G	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	70462250	rs1967984	T	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	70465153	rs3775782	A	T	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	70513139	rs1347046	C	T	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr4	70599777	rs11569735	T	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	70620708	rs2134668	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	70707945	rs1220724	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	70715100	rs11569707	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	70720121	.	TTC	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.674;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr4	70800130	rs116615671	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	70802151	rs73824710	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	70811749	.	A	T	252.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	70897571	rs17147980	A	G	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	70898903	rs1136511	G	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	70898922	rs17147990	T	A	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	70899037	rs776852	T	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	70899111	rs7667935	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	70921164	rs2271643	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	70921337	rs2271644	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	70944452	rs1399812	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	70947318	rs2063819	C	T	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	70947376	rs2063820	T	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	70948533	rs7675265	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	71007339	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.417;QD=2.68;ReadPosRankSum=0.057;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr4	71008313	rs777398	G	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	71008375	rs777399	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	71009033	rs777400	A	G	229.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	71020205	rs1709273	C	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	71021888	rs1709274	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	71024010	rs111347259	T	TACAA	1155.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	71065943	rs34093806	GA	G	222.37	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr4	71067317	rs4694273	C	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	71227877	rs62322478	G	A	2869.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.62;MQRankSum=3.153;QD=22.60;ReadPosRankSum=-1.308;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:6,121:0.95:127
chr4	71228001	rs1842476	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.11;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	71228024	rs17148798	G	C	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	71232430	rs10024123	T	C	21689.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.94;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,836:1.00:836
chr4	71232701	rs6853742	C	T	14116.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr4	71250308	rs2233586	T	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.55;QD=26.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	71250399	rs7676909	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	71255370	rs7674958	A	T	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	71255593	rs2988	G	A	21607.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.052;QD=25.97;ReadPosRankSum=-1.524;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:2,830:1.00:832
chr4	71255767	rs3733493	A	G	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr4	71339723	rs2306949	G	A	15261.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr4	71339728	rs2306948	C	T	15293.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr4	71339846	rs2306947	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	71346701	rs6826961	C	G	16735.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr4	71384488	rs28674149	C	T	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	71388394	rs4123809	T	G	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	71389497	rs3912756	C	G	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	71389669	rs3912755	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	71467593	rs28538959	A	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	71467710	rs13115627	A	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	71498303	rs144929717	G	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	71501674	rs139228330	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	71501744	rs1967376	T	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	71509086	rs7671281	T	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	71509431	rs3796704	G	A	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	71510313	.	G	T	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.790;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:282,78:0.22:360
chr4	71521931	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.18;ReadPosRankSum=-0.284;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr4	71628232	rs116371426	G	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	71629401	rs116143546	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	71639349	rs28750133	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	71659347	rs138056310	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	71691155	rs200027347	GACAA	G	2606.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	71691743	rs6814981	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	71698183	rs4694081	C	A	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	71699100	rs78419536	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	71704965	rs3775728	C	T	12410.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr4	71705262	rs6813092	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	71768079	rs1871048	C	G	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	71768319	.	C	CCCGCCCG	4085.73	.	AC=2;AF=1.00;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr4	71835822	rs7674402	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	71847860	rs58137770	A	T	2928.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=-0.856;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:2,116:0.98:118
chr4	71863702	rs112010388	A	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	71888332	.	CT	C	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=1.499;SOR=2.015;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr4	71892651	rs112161499	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	71894321	rs35880082	C	CTTTT	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;QD=35.90;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	71894349	.	G	A	785.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	71894476	rs11394166	A	AT	531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.408;QD=15.19;ReadPosRankSum=-0.472;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr4	72316822	rs10022349	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	72411967	rs4694097	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	72413281	rs2278893	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	72423426	rs148961885	C	CA	5822.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	72423624	rs1453474	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	72425771	rs72854443	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	72432991	rs965606	A	C	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	72433759	rs1453453	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	72618296	rs9016	T	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	72618334	rs7041	A	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	72620865	rs71673486	C	CTATTTATT	1888.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	72622403	rs222033	A	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	72634975	rs222016	G	A	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	72649774	rs3733359	G	A	7484.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.78;ReadPosRankSum=2.906;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:2,300:0.99:302
chr4	72669491	rs59662561	G	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	72934539	rs9884712	A	C	31.29	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=10.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	72934578	.	C	CT	173	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=7;HapScore=2;MGOF=23;MMLQ=20;MQ=60.37;NF=3;NR=4;PP=173;QD=28.2857142857;SC=TTTATCTTATCTTTTTTCCTG;SbPval=0.5;Source=Platypus;TC=11;TCF=4;TCR=7;TR=7;WE=72934586;WS=72934568;set=Platypus	GT:AD:AF:DP	1/1:4,7:0.64:11
chr4	72934632	rs9884478	C	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	72994296	rs10004420	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	73175093	rs10024487	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	73414286	rs788908	C	T	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr4	73433056	rs149497029	TTAAGA	T	2567.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	73433122	rs33925079	GA	G	2857.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.43;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	73433315	rs6830556	G	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	73434379	rs5859330	GT	G	1963.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr4	73434534	rs200641990	CCA	C	79.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.408;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr4	73434535	rs34234669	CA	C	451.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr4	73615956	rs1350836	C	T	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	73931170	rs2306057	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	73933671	rs66478166	ATGTG	A,ATG	3140.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=10.932;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=-2.149;QD=27.08;ReadPosRankSum=1.557;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:6,32,78:0.28,0.67:116
chr4	73991006	rs6822576	T	C	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	74274864	rs113884088	G	GCACA	335.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	74285758	rs2236766	G	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	74285823	rs2236767	G	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	74302870	rs16849384	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	74304118	rs6446932	T	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	74313169	rs7667494	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	74318330	rs4235117	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	74319538	rs7790	C	G	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	74364992	rs67050083	CT	C	856.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.371;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:11,63:0.85:74
chr4	74447800	rs2008288	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	74448078	rs148589925	ATCT	A	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	74448134	rs141070355	TTTTG	T	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	74450830	.	G	A	81	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=2;MGOF=14;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=81;QD=28.9428031368;SC=AATTGAATTGGGTGGTATTGT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=74450838;WS=74450827;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	74451073	rs12507775	A	G	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr4	74453656	rs10019146	G	A	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr4	74453691	rs10011419	T	C	6568.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.472;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=0.335;SOR=0.571;set=HC	GT:AD:AF:DP	1/1:1,257:1.00:258
chr4	74464285	rs10632092	T	TTG	1128.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr4	74464443	rs11368217	TA	T	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	74486052	rs1247591	C	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	74486264	rs1247590	G	A	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr4	74606375	rs2227538	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr4	74714003	rs6815457	A	G	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	74714084	rs16850078	T	C	10623.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr4	74719925	rs11723868	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	74903134	rs370655	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	75023609	rs6840665	T	C	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr4	75023709	rs2289443	C	T	15803.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr4	75046372	rs561583	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	75046465	rs561844	C	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	75066865	rs28479222	A	G	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	75180132	rs16850903	A	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	75231244	rs1460006	C	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	75245343	rs7660209	T	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	75246617	rs4694187	A	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	75248434	rs2367707	A	G	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	75248544	rs2367708	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	75311051	rs373251265	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	75485809	rs145175928	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	75485813	rs78161216	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	75719517	rs28549760	A	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	75937971	rs3822109	C	T	15590.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr4	75938179	rs3775527	G	A	21231.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=-0.916;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:2,822:1.00:824
chr4	75938236	rs1062293	A	G	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr4	75938373	rs919052	C	G	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	75971289	rs3733467	C	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	76415985	rs6833496	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	76434307	rs137955612	TATG	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76446921	rs112121251	G	GATT	2902.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	76467577	rs11722735	A	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	76474792	rs58556403	C	CT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.939;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr4	76474866	rs6535531	T	C	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=24.40;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	76488533	rs141320514	GCCAAAAT	G	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	76528895	.	T	C	146	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=1;HapScore=2;MGOF=115;MMLQ=27;MQ=59.12;NF=7;NR=1;PP=146;QD=22.5964015684;SC=CAAGACTCCATCAAAAAAAAA;SbPval=0.82;Source=Platypus;TC=10;TCF=8;TCR=2;TR=8;WE=76528903;WS=76528885;set=Platypus	GT:AD:AF:DP	1/1:2,8:0.80:10
chr4	76570994	rs35597810	C	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76571732	rs884871	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	76572191	rs2175766	A	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	76573688	rs13129043	G	A	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	76580894	rs17000733	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	76581064	rs6823013	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	76649924	rs2280095	C	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	76650176	rs7657871	C	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	76670180	rs3853184	T	C	12776.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr4	76676475	rs28573275	A	G	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	76691828	rs324715	G	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	76691850	rs3215203	CACTT	C	174.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	76785716	rs1394913	C	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76785723	rs1394914	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	76785736	rs1394915	T	C	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	76788499	rs17000961	T	A	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	76788564	rs34155925	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	76788692	rs2135234	C	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	76793228	rs1394916	A	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr4	76794345	rs6858658	T	G	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.30;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	76794450	rs139979412	A	AC	9385.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.125;QD=36.66;ReadPosRankSum=-1.103;SOR=0.306;set=HC	GT:AD:AF:DP	1/1:1,255:1.00:256
chr4	76800711	rs1972063	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76809386	rs7691755	A	G	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	76809617	rs17001150	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	76811175	rs28436183	G	A	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	76836137	rs6823734	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	76838929	rs34444403	TA	T	1139.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.274;QD=9.91;ReadPosRankSum=1.244;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:21,94:0.82:115
chr4	76841748	rs2280101	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	76861137	rs6847716	G	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	76861859	rs2292533	C	T	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	76878716	rs2242471	G	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	76878956	rs2242473	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	76878982	rs2242474	T	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	76997157	rs10674212	G	GT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.868;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:96,41:0.30:137
chr4	77025273	rs7682766	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	77033721	rs62318929	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	77036369	rs1127695	G	A	118.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	77036406	rs17001433	T	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	77038662	rs11726372	G	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	77038807	rs7657846	C	T	4942.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=2.104;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,190:0.99:191
chr4	77038974	rs6532201	T	A	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	77039174	rs6813732	G	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	77039193	rs6840007	A	T	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	77045728	rs7692789	A	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	77045736	rs142448247	ATATT	A	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	77045762	rs7697701	T	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	77045777	rs10567711	TGG	T	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	77051703	rs57765272	G	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	77052031	rs62300572	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	77052288	rs60523248	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	77052530	rs13126384	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	77053558	rs7698392	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	77053562	rs4859619	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.05;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	77055474	rs11097244	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	77057501	rs11558468	A	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr4	77060903	rs58695482	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	77061130	rs60913446	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	77065223	rs11724260	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	77065264	rs11736522	C	T	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	77065318	rs36024409	C	CTGT	16827.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.75;MQRankSum=0.484;QD=41.65;ReadPosRankSum=2.762;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:5,399:0.99:404
chr4	77065476	rs200401097	TAAA	T	6163.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr4	77065518	rs11946345	T	C	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	77065580	rs11558469	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	77066887	rs61102074	G	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	77067133	rs735696	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	77067133	.	CAC	TAA	549	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=26;MQ=60.0;NF=12;NR=6;PP=549;QD=33.4704374923;SC=AAAAGTCACCCACAGTACTAA;SbPval=0.68;Source=Platypus;TC=19;TCF=12;TCR=7;TR=18;WE=77067143;WS=77067123;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	77067135	rs60015167	C	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	77067330	rs62300636	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	77067368	rs735697	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	77069679	rs3806733	G	T	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	77069733	rs3806732	T	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	77083070	rs3836573	TCAG	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	77091006	rs35369082	A	T	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	77091186	rs113848239	AAGCTG	A	3024.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	77095271	rs3821981	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	77095574	rs3733257	C	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr4	77095589	rs3733258	G	A	518.78	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	77097137	rs2289512	T	C	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	77097758	rs6532232	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	77105938	rs35947779	CA	C	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.897;QD=11.82;ReadPosRankSum=-1.754;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:15,69:0.82:84
chr4	77105952	rs59335499	A	T	2509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.607;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.452;QD=23.68;ReadPosRankSum=-1.198;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:6,100:0.94:106
chr4	77117096	rs3733259	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	77172682	.	G	T	224.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	77272076	rs114117871	C	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	77274242	rs12504985	T	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	77289047	rs5859510	CT	C	234.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	77303898	rs6844174	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	77304685	rs145401891	G	A	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	77357491	rs200881265	C	CT	53.70	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	77357492	.	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	77494534	rs71212430	CAAT	C	254.90	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr4	77871016	rs873090	T	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	77871169	rs141277628	CG	C	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	77969825	.	GA	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=5.138;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.425;QD=3.16;ReadPosRankSum=1.470;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr4	77969959	rs4252946	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	77977571	rs4252894	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	77977612	rs4252892	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	77987351	rs4241602	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	77996521	rs4252767	A	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	77996795	rs147494324	GGGGCGC	G	2702.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	78033833	rs73826722	T	C	11741.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,461:1.00:462
chr4	78641624	rs376684662	C	A	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.679;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=47.55;MQRankSum=-4.729;QD=5.65;ReadPosRankSum=2.093;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:194,106:0.35:300
chr4	78669454	rs6855336	A	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	78697552	rs34417165	T	TA	31.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.431;QD=5.30;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	78740066	rs6811439	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	78740132	rs6828302	G	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	78740203	.	G	GACACACACAC,GACACACACACAC	1111.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=44.47;SOR=1.893;set=HC	GT:AD:AF:DP	1/2:0,11,14:0.44,0.56:25
chr4	78830263	.	A	G	76.28	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	78830272	rs10551874	AAC	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	78870940	rs4859513	T	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	78979257	rs144106232	CGT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.529;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:134,15:0.10:149
chr4	79158843	rs10011303	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	79173515	rs34015316	C	CT,CTT	4512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.299;QD=17.77;ReadPosRankSum=2.036;SOR=0.670;set=HC	GT:AD:AF:DP	1/2:21,181,52:0.71,0.20:254
chr4	79176325	rs1017647	C	T	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	79176361	rs1017646	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	79186171	rs2867014	G	A	4244.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.144;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=1.396;SOR=0.340;set=HC	GT:AD:AF:DP	1/1:1,164:0.99:165
chr4	79187832	rs2008587	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	79187900	rs7694740	T	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	79188160	rs2008786	C	T	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	79188411	rs202231425	G	A	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	79204209	rs1378236	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	79284694	rs6835769	C	T	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:4,191:0.98:195
chr4	79300993	rs12512164	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	79305148	rs7694602	C	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	79305177	rs7677133	T	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	79321770	rs144058401	A	ATC	263.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	79339950	rs12649596	G	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	79345650	rs1471752	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	79350200	rs112867538	C	CTG,CTGTG	2772.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/2:0.17,0.80:76
chr4	79359885	rs2170899	T	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr4	79365479	rs7678731	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	79366655	rs3749489	G	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	79372856	rs10026662	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	79372930	rs753752	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	79373254	rs753751	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	79385719	rs6851427	G	A	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	79387464	rs7684722	A	G	16014.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr4	79391020	rs7681619	C	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	79391036	rs1496602	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	79391256	rs7664505	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	79391424	rs6533688	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	79400868	rs11098194	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	79403146	rs34505482	A	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	79409997	rs1496603	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	79443774	rs931604	T	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	79455858	rs4975140	T	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	79531186	rs5944	C	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	79531308	rs4612	C	T	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	79786974	rs2288254	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	79845007	rs13108247	C	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	79854436	rs10857059	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	80828555	rs61048419	G	A	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr4	80828740	rs6819294	T	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	80905990	rs12647691	C	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	80957195	.	G	GA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.597;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr4	80975372	rs10745242	A	T	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	80977078	rs4594664	T	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	81123027	rs200207619	TGTGC	T	974.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr4	81529314	rs7693460	A	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	81529518	rs2867782	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	81884610	rs11452353	A	AT	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.61;QD=22.95;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	81884722	rs1052325	G	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=25.18;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	81967188	rs6831040	C	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	81973260	rs1390318	C	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	82061574	rs28664024	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	82064234	rs28377778	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	82065566	rs7687935	A	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	82069858	rs76259846	C	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	82073044	rs33960966	CTA	C	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	82073232	rs28727457	A	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	82074992	rs28758819	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	82366788	rs28560455	C	T	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	82366977	rs72876523	G	A	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	82368633	rs59588994	G	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	82369160	rs1077802	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	82369205	rs1077803	T	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	82377542	rs111465598	T	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	83292859	rs115786850	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	83349357	rs75269398	G	A	4261.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=-1.226;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr4	83349385	rs75978479	T	G	4565.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=1.899;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:2,175:0.99:177
chr4	83349634	rs6827156	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	83350502	.	GGCAGGGGGGTGCTGGCGC	G	9986.73	.	AC=2;AF=1.00;AN=2;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	83352177	rs10646358	C	CTT	2650.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	83352186	rs35117197	G	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	83369287	rs4285076	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	83375719	rs6853622	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	83406549	.	ATG	A	30	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.4999;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=30;QD=35.0;SC=GTGGCCATGAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=5;TCF=2;TCR=3;TR=1;WE=83406558;WS=83406539;set=Platypus	GT:AD:AF:DP	1/0:4,1:0.20:5
chr4	83411201	rs4693447	G	A	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	83483562	rs35866205	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	83552809	rs3857138	A	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	83582211	rs3733227	C	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	83626674	rs6853042	G	A	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	83719593	rs142842178	G	A	12808.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:4,502:0.99:506
chr4	83763690	rs13102775	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	83765691	rs11737142	G	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	83774687	rs13112559	C	G	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	83778699	rs6815179	T	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	83784337	rs7666917	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	83787845	rs7356522	G	A	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	83787875	rs41279293	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	83788344	rs2045478	A	T	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	83788562	rs2045479	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	83792464	.	T	TAC	411.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr4	83822334	rs982146	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	83827822	rs3214025	A	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	83838217	rs1031639	G	A	8963.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr4	83839799	rs6535411	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	83849581	rs6535412	A	G	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	83852043	rs115904130	C	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	83852065	rs985899	G	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	83857108	rs6535413	AT	GA	15807.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	83857402	rs6535415	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	83900043	rs6535422	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	83900260	rs7674484	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	83970297	rs3081902	CT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.212;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:122,37:0.23:159
chr4	83977975	rs6535432	C	T	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	83989410	rs10471050	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	83989516	rs2868747	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84189002	.	C	G	338.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.23;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	84189012	rs11448409	G	GT	131.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.82;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	84190978	rs79637582	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	84191031	rs6535454	A	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	84193366	rs6841889	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	84222208	rs11031	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	84222286	rs6843115	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	84223461	rs4285078	G	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	84223559	.	C	CT	41.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.24;ReadPosRankSum=1.930;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	84230619	rs11099592	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	84231775	rs6857500	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	84232104	rs6535455	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84234189	rs181367608	A	G	971.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;QD=28.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84234229	rs6840520	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	84240654	rs12501123	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84240680	rs12501124	G	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.04;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	84240684	rs75394813	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.05;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	84328632	rs17006794	C	T	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	84362401	rs77852634	T	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	84362443	rs4693088	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	84364808	rs6535473	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84367286	rs11099600	G	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	84368225	rs11272773	GCATTGTGGCCAATGCCTGTAATCC	G	779.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	84370124	rs10718573	TA	T	507.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	84374480	rs1494961	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	84376743	rs6831595	A	T	9933.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr4	84382264	rs142051764	C	T	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.61;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	84384868	rs79585753	A	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	84393244	rs111692631	T	A	128.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.04;ReadPosRankSum=0.887;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr4	84393475	rs6535478	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	84393485	rs75295148	A	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	84397620	rs17352824	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	84401623	rs6838354	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	84403491	rs35608460	A	AG	462.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	84509465	rs11394944	T	TG	7404.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	84519775	rs149629973	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.773;QD=0.92;ReadPosRankSum=-0.042;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr4	85414320	rs7670936	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	85530796	rs17009168	A	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	85555196	rs13102661	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	85560000	rs34754898	T	TTA	142.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	85560271	rs9784491	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	85625701	rs1838039	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	85710785	.	AAC	A	47.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr4	85765541	rs2869216	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	86491584	rs202209554	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=3.683;QD=1.55;ReadPosRankSum=-0.174;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr4	86749306	rs17011016	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	86844835	rs6824722	A	G	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	86851950	.	C	A	278.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	86921612	rs12505097	C	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=20.59;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	87024228	.	C	CTGTGTG,CTGTG	1036.27	.	AC=1,0;AF=0.500,0.00;AN=2;DP=35;set=Intersection	GT:AF:DP	0/1:0.80:35
chr4	87593393	.	A	G	140.90	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	87593620	rs375778703	A	G	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chr4	87638342	rs35080587	A	AT	252.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-1.346;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr4	87656159	rs7699564	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	87671750	rs10516781	A	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	87679642	rs1420624	A	C	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	87684031	rs710832	A	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	87689268	rs11097118	A	G	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	87695455	rs11097120	G	A	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	87695481	rs17012069	G	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	87703432	rs369485937	C	T	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	87706506	rs989902	T	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	87718203	rs75908402	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	87720470	.	C	CT	128.75	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	87725101	rs9985645	T	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	87731238	rs11930396	G	A	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	87746494	rs6531933	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	87752909	rs7690165	T	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	87753117	rs73838347	GT	AC	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	87754419	rs10050311	C	T	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	87754713	rs7678571	G	A	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.42;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	87808810	rs3035472	G	GCA	3638.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	87809387	rs1550931	G	T	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	87811352	.	GAGGGAGGGAGGA	G	616.70	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.78;QD=34.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr4	87812586	rs55723875	TA	T	3362.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:12,198:0.94:210
chr4	87957989	rs340629	T	C	12827.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=23.93;SOR=4.319;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr4	87968798	rs6854749	A	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	87968979	rs58633957	G	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	88005203	rs236996	G	A	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	88027023	rs150890635	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	88048315	rs112686186	GC	G	4105.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	88048325	.	CCCA	C	31.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=12.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.260;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr4	88048326	.	CCA	C	1162.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:12,50:0.81:62
chr4	88052151	rs147629054	G	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	88052219	rs342467	T	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	88053085	rs342466	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	88056719	rs56703224	GT	G	2251.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=22.29;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	88056794	rs61734710	C	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=26.15;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	88056925	rs342464	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	88084946	rs185034920	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	88226480	rs6850131	A	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	88234874	rs7698974	C	T	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	88238448	rs6531975	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	88258483	rs9991501	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	88261828	rs7679024	A	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	88312251	rs368478743	GT	G	311.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.971;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.061;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr4	88362904	rs13104303	C	T	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	88401616	rs9933	A	G	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	88401735	rs34452129	CTA	C	3432.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	88403409	rs60202847	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	88403503	rs56755866	G	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	88403823	rs6857504	T	G	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	88415636	rs1049544	G	C	10397.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr4	88415838	rs75970070	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	88416188	rs13051	G	T	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	88416223	rs8342	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	88532182	.	A	AGTGT	630.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	88533163	rs35939827	TTGTGTGTG	T	315.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	88533441	rs13131929	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	88534235	rs2736982	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr4	88535785	rs116512524	C	T	16312.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:1,617:1.00:618
chr4	88537737	rs2615489	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr4	88577573	rs2615480	A	G	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	88578310	rs2615479	A	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	88580457	.	C	T	3080.77	.	AC=2;AF=1.00;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	88732453	rs4693183	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	88732531	rs4693878	T	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	88732746	rs13144371	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	88732763	rs17013181	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	88755766	rs75042457	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	88755828	rs7698623	T	C	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	88759690	rs6835632	T	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	88761193	rs72875497	C	T	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr4	88813269	rs71594826	G	GC	14574.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.76;QD=45.40;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	88813270	.	C	CCAAT	2973	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=10;MMLQ=27;MQ=58.42;NF=32;NR=80;PP=2973;QD=20;SC=CAGGCATTGGCATGACCAAAG;SbPval=0.42;Source=Platypus;TC=120;TCF=32;TCR=88;TR=112;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	1/1:8,112:0.93:120
chr4	88813271	.	A	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=27;MQ=58.87;NF=78;NR=81;PP=2965;QD=20;SC=AGGCATTGGCATGACCAAAGC;SbPval=0.47;Source=Platypus;TC=172;TCF=88;TCR=84;TR=159;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	1/1:13,159:0.92:172
chr4	88813271	rs35753589	A	AATT	14782.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=45.77;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	88813503	rs6532031	T	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr4	88815163	rs3061166	A	ATTAGG	12350.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	88902725	rs6812524	G	A	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	88903495	rs151181221	C	G	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	88903774	rs7435825	G	A	8223.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	88959381	rs2725221	G	A	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	88973211	rs145297759	G	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	89016782	rs2231162	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	89079632	rs111766106	G	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	89080495	rs59172759	A	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	89352469	rs57584452	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.230;QD=0.29;ReadPosRankSum=0.452;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:227,42:0.16:269
chr4	89385126	rs17014143	G	A	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	89415396	rs6857425	T	C	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr4	89444528	rs67364668	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	89527323	rs17799056	G	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	89571260	rs2860420	A	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	89573023	rs2924931	A	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	89575108	rs2860426	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	89575324	rs2860427	T	A	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	89576294	rs2282594	G	A	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	89577214	rs2972040	A	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	89585235	rs2972018	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	89588689	rs3017921	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	89599421	rs2604227	A	C	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	89618837	rs710834	T	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	89628242	rs2924934	G	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	89649659	rs9224	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	89649676	rs73841658	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	89668210	rs2278877	G	T	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr4	89669110	rs7658690	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	89669115	rs7658214	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	89670155	rs3756050	C	T	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr4	89671810	rs3217628	A	AGG	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	89688529	rs17014526	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	89978024	.	G	T	3175.77	.	AC=2;AF=1.00;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	89978281	rs11097210	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	90034030	rs17015025	G	A	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	90168825	rs7672015	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	90169864	rs78583550	G	A	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	90743331	rs10005233	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	90749435	rs34183114	T	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	90756550	rs7681440	C	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	90756626	rs35009676	C	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	90830425	.	A	T	1238.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr4	90874095	rs3832297	A	AC	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	91234250	rs1466391	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	91246656	rs1870795	C	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	91246905	rs9284586	C	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	91246916	rs9284587	G	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	91321410	rs115644680	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	91584811	rs6842658	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	91584992	rs6842926	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	91585060	rs6843110	A	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	91832609	rs6855137	G	C	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	92240031	rs9999729	C	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	92240080	rs9999885	G	A	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	92240278	rs7653977	A	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	92240317	rs7683541	T	C	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	92240802	rs6532289	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	92240892	rs6816636	C	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	92240925	rs6532290	T	G	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	92241031	rs6817404	G	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	92241071	rs6816883	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	92246344	rs3762827	G	A	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	92246541	rs1528572	T	A	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	94032125	rs2271385	G	C	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	94128432	rs111838576	TTGAG	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	94159770	rs13142615	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	94316763	rs1385405	T	G	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr4	95134165	rs10433970	C	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr4	95169682	rs10034781	G	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	95169772	rs7435106	T	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	95170839	rs11722476	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	95173779	rs7439869	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	95197520	rs6823404	C	T	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr4	95199479	rs35670996	C	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	95202492	rs35361491	G	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	95206252	rs67631469	TTATC	T	2642.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	95494379	.	C	T	276.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	95498617	rs35078286	GAT	G	641.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr4	95508108	rs70946535	CT	C	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.318;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:40,45:0.53:85
chr4	95529430	rs10033359	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	95531417	rs10017461	A	G	2833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.693;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=1.181;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:1,109:0.99:110
chr4	95531562	rs10007050	T	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	95539267	rs966845	G	A	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr4	95561651	rs10716970	GT	G	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.882;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.364;QD=5.88;ReadPosRankSum=0.353;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr4	95578588	rs13107595	G	A	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	96123768	rs10025766	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	96123981	rs3733212	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	96141421	.	C	CT	257.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	96169733	rs13118653	G	T	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	96169752	rs77834215	G	A	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:4,245:0.98:249
chr4	96256673	rs1843018	G	A	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	99218108	rs34325900	G	GA	4633.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	99399820	rs143204496	G	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	99408106	rs6838913	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	99802309	rs201272862	AAAG	A	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.722;QD=9.92;ReadPosRankSum=-0.061;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	99802395	rs11729285	C	T	177.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	99850126	rs11723037	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	99918661	rs10035037	A	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	99926965	rs2123782	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	99952607	rs1037476	C	T	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	99955535	rs7670154	T	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	99957208	rs72908996	A	G	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr4	100001247	rs1154412	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	100006645	rs1154410	A	G	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	100009738	rs1154401	G	C	14078.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr4	100009952	rs11434442	T	TG	1872.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr4	100021124	rs2851279	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	100045500	rs1042365	T	G	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	100045574	rs1042364	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	100045616	rs1126673	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	100045647	rs2602894	A	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	100048327	rs9307234	G	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	100048414	rs1126671	T	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	100048506	rs6836440	G	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	100052733	rs1126670	C	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	100062819	rs2032349	A	G	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	100064166	.	G	GA	52	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=52;QD=22.0;SC=TTTATTTCTTGAAAAAAAAAC;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=3;WE=100064174;WS=100064156;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr4	100064305	rs4699715	C	G	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	100128753	rs4147545	T	C	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	100131163	rs6833176	G	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	100134713	rs5860571	A	AT	6520.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	100140306	rs4699735	A	T	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.74;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	100200509	rs3819197	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	100229017	rs2066702	G	A	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	100235194	rs28626993	G	A	12943.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:2,503:1.00:505
chr4	100239319	rs1229984	T	C	7795.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr4	100258054	rs1693453	C	A	14913.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr4	100258155	rs1614972	C	T	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	100260669	rs5860576	GCCC	G	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	100260681	rs1975438	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	100266133	rs2241894	T	C	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr4	100268190	rs283413	A	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	100334449	rs17588403	T	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	100341643	rs1154460	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	100348837	rs11480228	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.284;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr4	100443782	rs13119384	T	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	100445589	rs35080520	T	TC	142.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	100445763	rs61598233	GCTAT	G	1428.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;MQ=60.27;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	100451127	rs45440196	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr4	100451197	rs2089079	C	T	486.79	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr4	100457117	rs111869659	A	ACAGT	1491.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	100457344	rs10019266	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	100477462	rs11935423	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	100478624	rs3817083	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	100485244	rs11944749	G	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	100485255	rs11944752	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	100491772	rs11933337	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	100495817	rs1800804	T	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	100504664	rs3816873	T	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	100534041	rs2718684	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	100543745	rs2255119	A	G	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	100543956	rs114049933	A	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	100738223	rs72911129	G	T	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	100784875	rs71913814	GT	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.304;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr4	100789506	rs72913018	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	100805207	rs6532835	C	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	100806677	rs113542593	C	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	100826878	rs112371264	C	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	100829746	rs7676564	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	101109385	rs3749603	A	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	101331343	rs67832221	C	T	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	101337248	rs144411699	C	CAT	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	101338192	rs141333878	CA	C	687.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	101343979	.	CTT	C	754.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.81;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	101946977	.	CAAAA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.84;ReadPosRankSum=1.611;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	101953322	rs2851060	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	102020924	rs3729663	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr4	102116994	rs2659542	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	102117323	rs2850991	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	102171422	rs73833281	G	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr4	102171591	rs2583404	T	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	102171606	rs2850958	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	102267817	rs201159854	GAGGAA	G	9539.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	102268034	.	A	ACGC	3588.73	.	AC=1;AF=0.500;AN=2;DP=291;set=Intersection	GT:AD:AF:DP	0/1:20,162:0.89:182
chr4	102642453	rs10856962	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	102642526	rs12506517	T	C	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr4	102791905	rs10516483	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	102839362	rs3733198	A	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.86;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	102965043	rs3113676	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	103174491	rs151370	A	G	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	103188833	rs71813938	TAGA	T	3751.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	103188865	rs10685391	G	GTT	1197.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=29.94;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	103189345	rs60765320	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	103225513	rs11097773	T	C	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	103228734	rs35411892	C	T	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	103458888	rs3830689	TCA	T	298.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	103514658	rs1609993	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	103529024	rs4648100	G	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	103533821	rs4648110	T	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	103553447	rs5860729	GA	G	829.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,45:0.94:48
chr4	103553543	rs735403	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	103555992	rs2272697	A	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	103556316	rs909349	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	103556367	rs11436517	G	GT	290.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	103557077	rs2866413	G	A	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	103557192	rs4547797	C	T	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	103557219	rs2866414	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	103557251	rs10027437	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	103557311	rs4496586	G	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	103610623	rs78612967	T	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	103644986	.	A	AT	357.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	103645082	rs6857760	C	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	103675159	rs200956773	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-0.516;QD=1.22;ReadPosRankSum=-0.883;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr4	103719893	rs223437	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	103719906	rs223436	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	103723815	rs138429164	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	103730179	rs34491518	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=2.464;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr4	103732704	rs201561589	T	TG	314.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	103732845	rs223414	A	C	673.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.163;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.46;ReadPosRankSum=1.739;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr4	103732866	rs223413	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	103789810	rs223333	C	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	103790186	rs223332	G	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	103806308	rs35282200	CTA	C	5310.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr4	103833145	rs199745844	C	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.15;MQRankSum=-2.166;QD=3.92;ReadPosRankSum=-0.871;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	103833295	.	GAA	G	47	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=0.9999;HP=17;HapScore=2;MGOF=19;MMLQ=27;MQ=59.16;NF=0;NR=4;PP=47;QD=13.0;SC=ACCTCCAAAAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=103833304;WS=103833285;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	103866480	rs3974494	G	A	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=25.70;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	103911069	rs2715591	C	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	103911159	rs7672319	A	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	103911222	rs6533051	C	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	103941410	rs57424390	G	GT	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=18.12;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	104007718	rs3832316	CA	C	243.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.196;QD=12.83;ReadPosRankSum=-1.110;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr4	104081678	rs148062383	CTT	C	46.70	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	104096104	.	AT	A	85.87	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	104510766	rs2765	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	104512808	rs34550211	T	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	104577366	rs35085919	T	C	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	105393361	rs4413407	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	106111401	rs10026237	C	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	106111749	rs9993497	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	106154990	rs113330299	T	TATAG	1072.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr4	106155751	rs6843141	G	A	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:3,357:0.99:360
chr4	106158216	rs3796927	G	A	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr4	106164230	rs35073624	TAAG	T	310.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	106190862	rs3733609	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	106474096	rs6533206	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	106534691	rs2305212	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	106534807	rs73837073	G	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	106569976	rs377587421	CCT	C	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.729;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr4	106580340	rs13147012	A	G	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	106640184	rs3796926	C	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	106818983	rs11726457	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	106879579	rs73836924	A	G	19820.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.78;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr4	106880445	rs28560134	A	G	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	106892254	rs71672810	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.056;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr4	107037630	rs78488187	C	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	107157699	.	T	TA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.693;QD=1.35;ReadPosRankSum=0.913;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr4	107163773	rs9996386	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	107168431	rs3775091	G	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	107171647	rs41277029	G	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	107237656	rs80024327	C	T	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	107279518	rs75431821	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	108575989	rs3733633	G	A	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	108581002	rs11291153	GC	G	1549.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	108641212	.	T	C	7516.77	.	AC=2;AF=1.00;AN=2;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	108852763	rs112053024	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	108866058	rs10002671	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	108868515	rs6856745	T	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	108925918	rs149962772	C	G	3052.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-0.613;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,119:0.98:121
chr4	108926170	rs3775973	T	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	108931039	rs4956145	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.67;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	108931133	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.006;QD=4.26;ReadPosRankSum=-0.491;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr4	108931178	rs148199172	C	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	108931204	rs141131432	A	G	148.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr4	108935768	.	CT	C	69.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=0.75;ReadPosRankSum=1.452;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr4	108935770	rs7677408	T	C	781.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.299;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-1.214;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr4	108935771	.	T	C	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.601;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr4	108935871	rs4956147	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	108944579	rs4956032	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	108944821	rs4956033	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	108944846	rs4956034	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	108985388	rs4613638	A	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	109004319	rs145938972	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	109478108	rs11731416	C	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	109541616	rs3796935	T	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	109671936	rs75147071	G	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	109759469	rs4956063	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	109762918	rs11942576	C	A	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	109766177	rs10015534	G	C	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	109766290	rs11098004	T	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	109767453	rs5860952	C	CA	4827.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	109769899	rs13135591	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	109790346	rs72348233	CAATAAATA	CAATA,C	2870.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=111;set=Intersection	GT:AF:DP	1/1:1.00:65
chr4	109810988	rs72668354	A	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr4	109841743	rs17596705	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr4	109841889	rs5860955	G	GA	309.19	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr4	109842038	rs2030844	T	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	109861557	rs113808298	A	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	109931455	rs376144125	AC	A	772.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	109931457	rs4995475	C	T	781.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	109969183	rs3096481	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	109969337	rs3108954	G	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	109969456	rs3096482	T	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	110384047	rs70949082	G	GCTTTT	2111.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr4	110384938	rs10002595	T	C	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	110415750	rs10020652	C	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	110435068	rs28723468	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	110445945	rs6533431	A	G	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	110446409	rs6838597	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	110446454	rs6812906	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	110448374	rs71594190	CA	C	183.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.671;QD=11.48;ReadPosRankSum=1.901;SOR=0.197;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr4	110448702	rs6827006	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	110451390	rs7667502	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	110451678	rs9994676	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	110459584	rs7685647	T	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	110460647	rs72898791	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	110569880	rs138704928	CAAA	C	46.37	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	110580084	rs1543812	G	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	110585578	rs11405576	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.941;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr4	110602430	rs4698780	T	G	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	110603784	rs3733611	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	110606394	rs3214165	C	CT	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.24;QD=20.75;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	110608523	rs80012156	T	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	110608536	rs13151303	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	110619534	rs2301717	T	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	110737389	rs2276326	T	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	110737549	rs6828254	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=24.91;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	110743643	rs17849758	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	110745095	rs13109228	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	110754499	rs12513108	T	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	110757287	rs61744555	G	A	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	110758551	rs4698750	G	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	110765361	rs7681770	T	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	110788739	rs2347130	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	110791361	rs2347131	G	A	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	110791413	rs2347132	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	110791543	rs2347133	C	T	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	110862238	rs11568885	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	110862363	rs11568886	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	110866178	rs4698755	A	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	110866442	rs4698756	G	A	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	110866453	rs11568912	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	110880364	rs2067004	T	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	110881902	rs11568933	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	110895847	rs11568990	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	110901198	rs2237051	G	A	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr4	110904502	rs6825106	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	110908881	rs11569045	G	A	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	110909735	rs74379237	C	A	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr4	110914427	rs4698803	A	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	110929468	rs148007642	CCA	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.220;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr4	110929538	rs11569124	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	111398208	rs10004516	A	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	111409705	rs1126483	T	C	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr4	111437103	rs2348432	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	111437127	rs2348433	A	C	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	111454153	rs671841	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	111474630	rs11933999	G	A	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	111781650	rs10213399	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	113066831	rs10002700	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	113175742	rs17044344	A	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	113178894	rs147158310	ATTTGT	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	113179077	rs4834247	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	113179080	rs4834248	A	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	113199075	rs701759	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	113199691	rs6834298	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr4	113344685	rs1989924	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	113344826	rs1989925	A	G	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	113344925	rs1989926	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	113347035	rs77202449	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	113347496	rs9994944	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	113350154	rs35133578	C	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	113350415	rs11944513	C	T	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	113351521	rs1029447	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	113352397	rs2074388	G	A	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	113352628	rs13148353	A	G	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr4	113352899	rs2074379	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	113353285	rs11726117	T	C	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	113353842	rs6841595	A	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	113356495	rs11098156	G	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	113359703	rs231247	A	G	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr4	113362316	rs1486868	A	G	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr4	113436044	rs901474	T	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	114067145	rs7689214	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	114072148	rs10647173	G	GAA	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	114072149	rs61478665	T	A	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	114081584	rs17590579	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	114254454	rs369809224	ATG	A	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr4	114257201	rs3736575	C	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	114260492	rs2272231	G	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	114260538	rs2272230	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	114267023	rs9968405	G	A	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	114269509	rs2272234	G	A	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	114269552	rs2272235	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	114275942	rs3796928	C	G	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	114276884	rs3733615	A	G	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	114278277	rs3733617	C	T	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	114286357	rs34201791	ATG	A	688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.282;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr4	114294308	rs2293324	T	C	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr4	114309839	rs6533681	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	114310106	.	CTG	C	120	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=3;MGOF=50;MMLQ=27;MQ=58.57;NF=0;NR=5;PP=120;QD=24.8;SC=GCATGCATGCCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=5;WE=114310117;WS=114310096;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr4	114426077	rs5861139	CA	C	555.82	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:5,38:0.88:43
chr4	114458402	rs734348	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	114582933	.	TA	T	209.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.567;QD=13.12;ReadPosRankSum=1.036;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr4	115544714	rs6851610	A	G	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	115586796	rs55759710	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	115589302	rs11098261	A	G	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	115748914	rs112501949	A	ATT	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	115748918	rs74651225	A	T	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	115749005	rs6843860	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	115769330	rs10022934	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	118975242	rs10012897	A	G	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr4	118976230	rs7687505	A	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	119217114	rs788665	C	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	119428087	rs77576167	T	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	119435862	rs202102941	A	G	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.42;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	119436576	rs371723815	CT	C	204.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.528;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=0.455;QD=10.22;ReadPosRankSum=1.485;SOR=2.675;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr4	119475430	rs2787272	G	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.24;QD=24.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	119609039	rs9968326	G	A	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	119613045	rs6821350	T	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	119613381	rs11387432	C	CT	71.82	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	119615543	rs13111664	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	119625000	rs3733517	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	119625273	rs298995	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	119652403	rs201791424	CATAA	C	805.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	119653822	rs2046779	G	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	119659284	rs7653962	T	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	119666217	rs35951660	T	TA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=4.375;QD=0.80;ReadPosRankSum=-1.978;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr4	119674051	rs71595318	G	GA	1875.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-1.154;SOR=0.590;set=HC	GT:AD:AF:DP	1/1:13,98:0.88:111
chr4	119689549	rs11412557	C	CT	188.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.858;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr4	119736598	rs6843524	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	119754893	.	C	G	750.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	119944611	rs1459058	G	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	119948046	rs17263971	A	C	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	119950975	rs111780874	A	AT	631.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.519;QD=13.44;ReadPosRankSum=1.596;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:7,40:0.85:47
chr4	119951647	rs7698598	A	G	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr4	120177522	rs7668372	G	T	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	120177708	rs7668423	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	120194718	rs35610634	G	GT,GTT	2127.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=134;set=Intersection	GT:AF:DP	1/1:0.92:118
chr4	120220085	rs111948904	A	AAAAC	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	120240131	rs2964	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	120240181	rs1511024	C	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	120240238	rs1511025	T	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	120240802	rs71595363	C	CATAATAATA	363.74	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	120241849	rs4834770	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	120241902	rs1799883	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	120242145	rs10006259	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	120243336	rs5861422	TA	T	6765.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	120243389	rs5861423	A	ACTACT	1619.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	120243417	rs5861424	T	TTC	818.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr4	120243419	rs1973598	A	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	120255513	rs201825016	T	C	87.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-1.383;QD=14.55;ReadPosRankSum=-0.431;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	120265259	rs10028773	C	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.32;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	120265430	rs28624167	G	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	120265443	rs10006630	A	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	120446868	rs3832310	GA	G	797.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.521;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.377;QD=16.62;ReadPosRankSum=0.955;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr4	120463856	rs2622497	A	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	120484174	rs114276127	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	120528327	rs3733526	G	A	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	120548074	rs3839163	A	AAAAAC	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	120550059	rs11342908	GC	G	2119.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=27.53;ReadPosRankSum=2.355;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,75:0.97:77
chr4	120550141	rs140532689	GGCA	G	3393.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	121737767	rs2136998	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	121828519	rs1901135	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	122137662	rs7663440	T	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	122148787	rs2044970	A	G	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	122250734	rs2302310	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	122254119	rs33977434	G	A	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	122257942	rs4558890	A	C	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	122258063	rs4490481	A	G	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	122261475	rs2276957	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	122301341	.	GGAGAGA	G	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.793;QD=22.14;ReadPosRankSum=0.044;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	122590883	.	TA	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=3.056;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:117,37:0.24:154
chr4	122681373	rs4342205	T	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	122683007	rs4370153	G	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	122687491	rs4833772	G	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	122723106	rs67772833	G	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	122732899	rs4295291	A	G	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	122735142	rs1803183	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	122735225	rs141260260	C	CTTA	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	122737487	rs71985276	C	CT	299.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.718;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr4	122737965	rs1051881	G	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	122740162	rs2071486	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	122740454	rs1396080	T	G	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	122741807	rs769243	C	T	7302.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	122742217	rs769242	T	C	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	122749436	rs2706793	G	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	122749541	rs1507994	C	T	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	122756274	rs55803709	G	T	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	122769964	rs111713350	CTCTT	C	4509.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=44.21;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	122776859	rs76863221	C	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	122835980	rs34119323	G	A	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	122998366	rs3915233	A	G	1795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;MQRankSum=-0.086;QD=25.65;ReadPosRankSum=-0.526;SOR=0.383;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr4	123092068	.	T	C	54.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	123095703	rs10021037	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	123108762	rs7670081	G	A	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	123109019	rs10009888	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr4	123109034	.	A	AT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.247;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:95,25:0.21:120
chr4	123111309	rs10212973	T	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	123120395	rs72925911	G	A	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	123122346	rs35552851	GTTTTAC	G	1014.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	123122377	rs10034361	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	123128669	.	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.264;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr4	123128843	rs72925923	T	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	123130247	rs141637421	CGTAA	C	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	123140739	rs6534345	G	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	123147732	.	A	T	908.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	123155875	.	T	A	1170.77	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	123159136	.	C	CAAAAA	98	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=20;HapScore=2;MGOF=65;MMLQ=16;MQ=56.24;NF=2;NR=1;PP=98;QD=33.6666666667;SC=GACTCCATCTCAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=123159144;WS=123159126;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr4	123159230	rs9994885	A	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	123161331	rs10023835	C	T	8073.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr4	123164046	rs10010628	A	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	123165186	rs6830417	T	G	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	123165241	rs6853719	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	123166093	rs10034342	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	123167141	.	T	G	153.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	123167475	rs28539255	A	T	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	123176375	rs28520439	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	123180030	rs45495097	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	123185682	rs7664976	C	A	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	123187869	rs7683061	C	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr4	123195436	rs72925965	T	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	123201125	rs28651726	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	123222417	rs35470132	T	TA,TAA	616.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=-2.006;SOR=0.719;set=HC	GT:AD:AF:DP	1/2:3,20,11:0.59,0.32:34
chr4	123234945	rs72925991	A	T	142.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	123270975	rs10518399	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	123271189	rs17005674	G	A	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr4	123277001	rs10017270	A	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr4	123277674	.	TTA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.036;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr4	123302244	rs28572399	C	T	5361.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=-0.231;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:2,216:0.99:218
chr4	123342616	rs1383043	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	123536963	rs4833837	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	123662997	rs309368	A	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr4	123664204	rs309370	G	A	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	123664247	rs309371	G	A	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	123748616	rs2922979	C	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	123838758	rs12648093	A	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	123843716	rs13134412	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	123854495	rs1563706	T	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	123868279	rs11098682	G	T	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	123868713	.	TTA	T	2428.73	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	123949556	rs1472949	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	124011624	.	A	C	205.80	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	125590478	rs1874748	T	C	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr4	125591687	rs3733471	A	G	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr4	125592065	rs10018651	C	A	12272.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr4	125593577	rs61739725	T	C	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	126238924	rs6847454	A	T	12537.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr4	126239986	rs1039808	C	T	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	126240510	rs2940779	T	C	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr4	126241871	rs2710555	C	T	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr4	126315063	rs28698823	A	T	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	126329789	rs958415	T	C	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	126335978	rs4605670	G	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	126336990	rs10010000	G	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	126337555	rs7675556	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	126355609	rs7656135	T	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	126369872	rs988863	G	C	11678.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr4	126371814	rs73849225	C	T	9366.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	126373594	rs114637892	A	G	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr4	126373789	rs12650153	G	A	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	126389627	rs6814158	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	126390010	rs35304021	A	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	126390022	rs34927272	A	G	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	126397321	rs17009761	C	T	3842.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.036;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.17;ReadPosRankSum=2.404;SOR=0.108;set=HC	GT:AD:AF:DP	1/1:2,157:0.99:159
chr4	126400825	rs1506361	G	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	126412575	rs1014866	A	G	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	128544696	rs4834207	A	G	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	128565000	rs3749507	A	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	128584580	rs4833380	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	128596948	rs149726398	G	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	128621272	rs12331481	A	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	128625275	rs73847046	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	128629885	rs56269930	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	128651726	rs35968387	A	G	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	128665981	rs769293	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	128723042	rs1380154	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	128803159	rs3811741	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	128807219	rs3811740	T	A	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	128812230	.	GT	G	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.161;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr4	128813685	rs142628767	A	G	502.79	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr4	128814964	rs17012739	G	T	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	128817903	.	C	CT	103.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.577;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr4	128817904	.	TG	T	225.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-1.173;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr4	128817905	.	G	T	110.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=8.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.052;SOR=2.158;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr4	128863071	rs199616927	T	TA	102.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=20.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	128923000	rs371700265	TG	T	350.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=19.49;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	129012181	rs2306054	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	129012638	rs1064205	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	129043609	rs111924302	G	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=64.741;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-3.674;QD=3.40;ReadPosRankSum=1.661;SOR=5.130;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr4	129043614	rs3733321	G	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=50.878;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.094;QD=2.41;ReadPosRankSum=1.996;SOR=5.131;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr4	129043624	.	G	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=42.031;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-5.121;QD=0.46;ReadPosRankSum=2.396;SOR=4.972;set=HC	GT:AD:AF:DP	0/1:95,11:0.10:106
chr4	129121861	.	TTTC	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.39;ReadPosRankSum=0.712;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr4	129193665	rs145910626	T	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	129805716	rs167618	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	129867280	rs10028124	T	A	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	129869490	.	CAA	C	41.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-0.366;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	129873433	rs10857134	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.439;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	129961179	rs3113489	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	130023759	rs1757935	A	T	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	130023884	rs35199409	G	T	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	130030644	rs2271570	C	T	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	130030652	rs337277	A	G	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	133367588	rs1827132	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	133367655	rs1827133	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	133368361	rs70948202	T	TC	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	134074058	rs3749589	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	134076285	rs2271172	C	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	134085208	rs4461537	C	T	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	134085312	rs10016648	A	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	135121729	rs74446611	G	A	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:3,257:0.99:260
chr4	139093228	rs4504306	T	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	139101725	rs74517103	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	139103366	rs10016559	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	139140388	rs10025342	G	A	9498.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr4	140005294	rs4863628	A	G	23266.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=26.00;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,895:1.00:895
chr4	140039107	rs60424237	C	CA	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.012;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	140039162	rs34114214	CAACT	C	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	140187985	rs6823412	G	A	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr4	140201259	rs28536098	G	A	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr4	140263849	rs11944434	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	140270875	rs2044810	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	140283102	rs3217605	CA	C	6594.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	140308984	rs998310	C	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	140417409	rs78553478	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	140417471	rs4863655	G	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	140587259	rs72152182	TGC	T	2520.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=43.46;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	140587263	.	C	T	1239	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=61.35;NF=17;NR=27;PP=1239;QD=28.9493457397;SC=TGTGTGTGCGCGTGTGTGCGT;SbPval=0.53;Source=Platypus;TC=45;TCF=17;TCR=28;TR=44;WE=140587282;WS=140587253;set=Platypus	GT:AD:AF:DP	1/1:1,44:0.98:45
chr4	140587268	.	GTGCGTGT	G	1875	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=0.9999;HP=2;HapScore=1;MGOF=11;MMLQ=27;MQ=60.64;NF=2;NR=26;PP=1875;QD=67.7142857143;SC=GTGCGCGTGTGTGCGTGTGTG;SbPval=0.59;Source=Platypus;TC=28;TCF=2;TCR=26;TR=28;WE=140587282;WS=140587253;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	140587270	.	GCGTGT	G	2470.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=44.92;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	140625323	rs925424	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr4	140651584	rs5862430	TCTG	T	10513.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	140809710	rs3775241	C	G	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	140811063	.	TTGCTGCTGCTGCTGCTGC	T,TTGC	6939.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=367;set=Intersection	GT:AF:DP	1/2:0.10,0.89:291
chr4	140811997	rs116651274	G	A	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	141212618	rs11938800	T	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	141290574	rs2668577	C	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	141311960	rs358329	T	C	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	141321425	rs2252427	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	141372485	rs6536966	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	141383034	rs10644682	T	TAC,TACAC	1773.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.516;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.73;MQRankSum=0.000;QD=25.71;ReadPosRankSum=0.320;SOR=1.652;set=HC	GT:AD:AF:DP	1/2:11,19,39:0.28,0.57:69
chr4	141481203	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=5.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.434;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr4	141484765	rs201917162	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.12;ReadPosRankSum=-0.876;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr4	141543997	rs1560440	G	A	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:3,291:0.99:294
chr4	141545397	rs2291713	A	C	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	141545666	rs11307081	CA	C	126.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.126;QD=12.69;ReadPosRankSum=-1.645;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	141548569	rs3816933	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	141549393	rs2291711	C	A	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	141549428	rs2291710	A	T	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	141555062	rs6851737	G	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	141560737	rs140437777	C	CCA	1256.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	141598126	rs2303911	C	T	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	141598290	rs2303912	A	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	141600320	rs4956329	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	141607410	rs113441126	G	C	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	141677006	rs70943501	A	AG	2391.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	141677088	rs202220348	C	T	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	141771714	.	G	GT	191.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.43;ReadPosRankSum=1.834;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	141771715	.	G	GTGTGT	324.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.98;ReadPosRankSum=1.701;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr4	141771899	rs147630687	TG	T	1138.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=37.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	141847077	rs13138724	G	A	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	141847110	rs13120735	T	C	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr4	141847279	rs12503723	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	141847350	rs28372287	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	141868736	rs2321687	G	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	141870648	rs4956494	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	141924720	.	T	TACACACACAC,TACACACAC	43	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=6;MMLQ=24;MQ=58.59;NF=2,2;NR=0,0;PP=43,39;QD=23.0;SC=CCCTAGCACGTACACACACAC;SbPval=1.0;Source=Platypus;TC=5;TCF=3;TCR=2;TR=2,2;WE=141924728;WS=141924710;set=Platypus	GT:AF:DP	0/1:0.40:5
chr4	141924817	rs73860215	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	141927425	.	TACATACATATATACGTATATATATAC	T	994.73	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	142151573	rs732624	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	142642503	rs146418929	AAGTG	A	410.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	143003155	rs11446749	G	GA	1413.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	143007197	rs336325	C	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	143007419	rs336324	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	143007460	rs336323	T	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	143044666	rs2645786	A	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	143066959	rs10008528	C	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	143095042	rs10013734	A	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	143114482	rs992256	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	143130034	rs1907123	A	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	143181746	rs375337012	AAT	A	71.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-0.653;QD=1.84;ReadPosRankSum=0.522;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr4	143181747	rs66750380	AT	A	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.001;QD=6.52;ReadPosRankSum=-1.464;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr4	143226496	rs17015882	A	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	143344974	rs61368063	T	TA	417.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.433;QD=16.07;ReadPosRankSum=0.049;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr4	144124492	rs4234886	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	144135718	rs4285045	G	A	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr4	144136193	rs10000911	T	G	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	144258429	.	G	A	6552.77	.	AC=2;AF=1.00;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	144317039	rs2048408	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	144337020	rs73850417	T	C	148.53	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr4	144380399	rs13114896	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	144381401	rs3795246	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	144447630	rs7694156	T	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	144456124	rs6818251	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	144459637	rs4690724	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	144466050	rs7692376	A	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	144466100	rs11289994	CT	C	84.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-1.276;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr4	144467104	rs13139128	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	144469383	rs2088415	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	144471402	rs1979776	T	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr4	144532693	rs72938301	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	144542213	rs17017968	A	G	8557.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr4	144614443	rs78465179	G	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	144617842	rs1545437	G	T	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	144618610	rs1034494	G	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	144620443	rs75092799	T	G	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	144620758	rs61427459	C	T	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	144621199	rs11100802	A	G	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr4	144801503	.	TA	T	1082	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=5;HapScore=4;MGOF=5;MMLQ=27;MQ=52.55;NF=9;NR=0;PP=1082;QD=125.0;SC=TCCCCTAAAATAGGGTTGCAT;SbPval=1.0;Source=Platypus;TC=39;TCF=25;TCR=14;TR=9;WE=144801530;WS=144801493;set=Platypus	GT:AD:AF:DP	0/1:30,9:0.23:39
chr4	144801522	.	C	T	1413	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=5;HapScore=4;MGOF=5;MMLQ=27;MQ=54.57;NF=26;NR=7;PP=1413;QD=43.8718549257;SC=ATCACAAAAACGATTTCGGAG;SbPval=0.81;Source=Platypus;TC=93;TCF=67;TCR=26;TR=33;WE=144801530;WS=144801493;set=Platypus	GT:AD:AF:DP	0/1:60,33:0.35:93
chr4	144801662	rs1132785	C	G,T	9952.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=445;set=Intersection	GT:AF:DP	1/2:0.60,0.40:437
chr4	144801728	rs201075956	CA	TG	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr4	144918900	rs1849110	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	145040784	rs62334651	T	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	145040962	rs6857144	CA	GT	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	145041686	rs4867	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.61;QD=26.14;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	145041707	rs7658293	CT	AC	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=43.85;QD=40.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	145041720	rs7682260	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.44;QD=29.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	145041741	rs4449373	T	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	146046138	rs4835203	T	C	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	146048583	rs1378314	T	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	146065006	rs9991890	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	146436286	.	CTGTGTG	CTG,C	295.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=28;set=Intersection	GT:AF:DP	1/1:1.00:8
chr4	146463974	.	TAAGAG	T	277.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	146601680	rs7683750	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	146601701	rs7682360	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	146653620	rs10008599	G	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr4	146681889	.	TG	T	157	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=16;HapScore=4;MGOF=74;MMLQ=19;MQ=56.94;NF=3;NR=4;PP=157;QD=22.8571428571;SC=TTTTTTTTTTTGTCTTTTGTC;SbPval=0.5;Source=Platypus;TC=14;TCF=7;TCR=7;TR=7;WE=146681905;WS=146681879;set=Platypus	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	146700781	rs9308196	A	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	146770400	rs28497499	T	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	146806762	rs201713155	CAGAGAGAGAGAGAGAGAGAG	CAGAGAGAGAGAGAG,CAGAGAGAGAG,C,CAGAGAGAGAGAG	771.73	.	AC=1,1,0,0;AF=0.500,0.500,0.00,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	2/1:0.45,0.50:22
chr4	147177822	rs28406249	A	G	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	147177865	rs58191358	A	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	147177868	rs34063596	T	TC	1732.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	147213912	rs4516736	T	C	60.96	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:1,2:0.67:3
chr4	147213926	.	A	G	51.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.95;ReadPosRankSum=0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr4	147214029	rs12711434	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	147425114	rs7439061	A	T	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	147431302	rs6816737	G	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	147741240	rs28687590	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	147754819	rs17021996	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	147775234	rs28694531	C	T	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	147788709	rs10013280	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	147824864	rs17610219	G	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr4	148457009	rs71594223	T	TTC	1833.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.295;QD=18.34;ReadPosRankSum=-0.204;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,94:0.94:100
chr4	148461037	rs5333	T	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	148461073	rs5334	G	A	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	148461378	rs2292765	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	148559848	rs17675537	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	148560357	rs2654935	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	148589677	rs2718454	C	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	148591769	rs2036502	G	T	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	148601729	rs7666065	C	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	148867663	rs137963850	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	148944467	rs35975487	A	G	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	148985720	rs3775327	T	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	148985798	.	T	TGCGTTAGGCTCCCAGACCCCAATGCCAGGG	452.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	149035449	rs1879829	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	149073555	rs2272089	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	149076195	rs7668847	A	G	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	149116035	rs4835500	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	149356300	rs5529	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	149356516	rs5525	A	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	149357475	rs5522	C	T	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr4	151120062	.	AC	A	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.695;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr4	151145556	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-2.111;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	151161490	rs6838238	T	C	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	151231371	rs1813134	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	151408800	rs7674989	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	151511715	rs4401437	T	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	151765243	rs186080	G	A	4680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=-0.621;SOR=0.348;set=HC	GT:AD:AF:DP	1/1:1,179:0.99:180
chr4	151829659	rs1201207	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	152020758	rs139578842	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	152021631	rs73859998	A	T	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	152024906	.	GTA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.296;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr4	152048936	rs11099782	A	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	152049589	rs373526468	GA	G	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	152060870	rs10084969	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	152201018	rs148861921	G	GCAGGT	4792.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	152201204	rs1875308	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	152203664	rs6849871	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	152212603	rs2407221	T	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	152583907	rs11378262	C	CT	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.086;QD=8.37;ReadPosRankSum=-0.301;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr4	152592469	rs112033226	A	ATTAC	3094.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.248;QD=41.26;ReadPosRankSum=-1.530;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:2,73:0.97:75
chr4	152601146	rs907237	T	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	152609694	rs6535814	A	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	152609700	rs6535815	A	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	152609920	rs11292952	TA	T	727.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.633;QD=13.48;ReadPosRankSum=0.684;SOR=0.438;set=HC	GT:AD:AF:DP	1/1:6,48:0.89:54
chr4	152643184	rs6817586	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	152679816	rs3828546	A	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	152681952	rs1429559	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	153252061	rs10033601	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	153267968	rs2714803	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	153410390	rs10021011	C	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	153549745	rs138358407	C	A	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.95;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	153573661	rs6849919	C	A	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	153690842	rs4696354	T	C	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	153750918	rs10010297	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	153793489	rs35670437	CT	C	177.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	153809342	rs76726136	C	T	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr4	153870242	rs368429472	GTAATAATAA	G	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=37.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	153870276	rs28633792	T	G	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.671;QD=23.28;ReadPosRankSum=-0.373;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr4	153884092	.	GGTGTGTGTGTGT	G,GGT,GGTGT	1469.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=56;set=Intersection	GT:AF:DP	1/2:0.27,0.73:41
chr4	153896315	rs80143169	C	T	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	153897690	rs61752497	A	G	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	154216710	rs893805	G	A	11969.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,464:1.00:465
chr4	154315340	rs9999596	T	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:5,109:0.96:114
chr4	154330064	.	G	GTATATA	105.73	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	154336174	rs11099880	A	T	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	154471113	rs9996529	G	A	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	154471161	rs59743932	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	154478000	rs10639508	T	TAAATC	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	154478300	rs56981750	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	154479430	rs6848033	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	154502068	rs7673291	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	154504515	rs111303446	CTTTAA	C	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	154505917	rs6535928	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	154506192	rs6857611	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	154512512	rs148283423	GAAAC	G	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	154513856	rs893628	G	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	154515174	rs149246799	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	154542161	rs3761657	C	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	154554183	rs3217466	TAAAA	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	154557383	rs142471814	ATG	A	1632.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	154557405	rs3214684	CT	C	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr4	154631543	rs2405432	A	T	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	154633580	rs33952548	GA	G	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	154644454	rs1456384	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	154709480	rs3810765	G	A	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	154709854	rs4643790	G	A	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	154709856	rs6535952	A	C	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	155156207	rs7655799	G	A	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr4	155219318	rs28561984	C	G	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	155219373	rs17031391	A	G	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	155219886	rs73857235	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	155225784	.	A	AAAACAAAC	849.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	155226190	.	G	GT	370.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	155256177	rs6858157	A	G	4781.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.323;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=1.121;SOR=0.469;set=HC	GT:AD:AF:DP	1/1:1,186:0.99:187
chr4	155256205	rs6858712	G	A	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	155278527	.	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.430;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr4	155305491	rs34927139	C	T	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	155407407	rs4346631	A	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	155407569	rs12501998	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	155407680	rs13151559	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	155410822	rs4696593	G	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	155411065	rs7656522	T	C	17203.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr4	155411104	rs6536016	A	C	21646.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,827:1.00:827
chr4	155460459	rs12642770	T	C	78.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	155505241	rs148317511	A	AGAAGACAGAGTGCTCCCATTCCCACTTC	795.73	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	155507590	rs6050	T	C	20076.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr4	155508627	rs2070018	G	A	8396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=1.133;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:2,342:0.99:344
chr4	155510224	rs7656433	A	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	155525276	rs2066865	G	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	155525970	rs1049636	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	155747891	rs200002465	CTT	C	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.228;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:92,34:0.27:126
chr4	156632391	rs11944673	A	G	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	156643068	rs3816763	G	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	156643176	rs2306555	T	A	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	156680340	rs1459845	G	T	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr4	156706482	rs1459853	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	156710824	rs367949923	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	156721198	rs2229202	C	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	156758138	rs141290852	TACTCTGAAACAA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	156763611	rs72956406	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	156765093	rs6536102	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	156765098	rs6536103	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	156784671	rs17033623	G	A	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	156784970	rs932081	C	T	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	156787214	rs1399044	A	G	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	156787340	rs6848883	G	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	156826166	rs2137778	C	G	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	156839462	rs2292537	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	157891859	rs76160032	T	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr4	157999382	rs77146823	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	158005876	rs7667450	G	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	158041591	rs11932115	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	158041896	rs3775724	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	158043559	rs41280501	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	158065038	rs12507409	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	158142740	rs28585580	T	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	158238830	rs4302506	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	158242540	rs4475186	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	159076679	rs6830475	C	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	159076826	rs6830702	C	T	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	159514454	rs36045439	GA	G	1415.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr4	159514466	rs11938976	C	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr4	159528457	.	TTCTAGTCCTGATTATTTTTATG	T	334	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=6;PP=334;QD=60.8333333333;SC=ATTTATATTCTTCTAGTCCTG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=6;WE=159528487;WS=159528447;set=Platypus	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	159528464	rs67344334	C	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr4	159528479	rs11326047	GT	G	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	159529091	rs11393653	A	AT	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	159538140	rs11321888	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.959;QD=5.06;ReadPosRankSum=0.579;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr4	159548100	rs12108317	A	T	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	159568383	rs13111939	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	159618695	rs376153836	CT	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.230;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr4	159620035	rs7679753	A	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	159630817	rs8396	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	159631991	rs9410	G	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	159640428	rs2230221	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	159640565	rs7666472	G	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	159642576	rs2070631	G	A	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	159644494	rs2070630	G	C	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	159644501	rs2070629	C	T	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	159825651	rs147769815	T	C	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	159825801	.	CAG	C	1752.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	159858736	rs11737459	T	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	159894199	rs1820511	T	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	159894250	rs619128	C	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	159894305	rs662473	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	160050068	rs200262378	TGG	T	201.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	160050096	rs376771195	GTA	G	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.59;ReadPosRankSum=2.369;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	160107918	rs10014197	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	160114277	rs6834634	G	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	160162315	rs11944449	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	160251417	.	ATG	A	479.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	160264717	rs79864624	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	160274180	rs10034898	G	C	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	162459299	rs4691769	T	C	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	162463961	rs57772421	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	162577430	rs17638339	A	G	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	162680450	rs73860714	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	162697014	rs34423160	T	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	162841814	rs5863499	T	TA	1818.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr4	164048199	rs4691895	G	C	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	164049916	rs1061075	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	164085425	rs4691896	T	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	164087614	rs35063973	G	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	164087954	rs936562	A	T	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	164393117	rs11735477	T	A	7838.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr4	164533316	rs907431	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	164621883	rs9308064	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	165118094	rs1864598	C	A	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	165118285	rs374180838	TTCC	T	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.902;QD=1.08;ReadPosRankSum=-2.037;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:482,50:0.09:532
chr4	165878567	rs73871552	G	C	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr4	165878609	rs3196673	T	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	165891247	rs201936482	A	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.43;QD=26.04;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	166021811	rs6536890	G	C	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	166149905	.	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-4.519;QD=3.90;ReadPosRankSum=-2.314;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr4	166149915	.	G	A	246.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr4	166150086	rs72699582	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr4	166259056	rs34499452	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	166261589	rs7679322	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	166261609	rs7679808	G	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	166262864	rs72701630	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	166263047	rs17585739	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	166307262	rs11100610	T	C	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	166403574	rs2289230	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	166405800	rs2304592	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	166408782	rs3822062	T	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	166414211	rs79474947	G	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	166416643	rs7692951	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	166928911	rs12649793	C	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	166929276	rs3775321	A	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	166981408	rs10651825	T	TA	69.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	167012250	rs33986267	T	A	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	167658652	.	G	T	6330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.799;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:206,306:0.60:512
chr4	167713331	rs72984042	A	G	3384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.424;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=-0.752;SOR=0.386;set=HC	GT:AD:AF:DP	1/1:1,138:0.99:139
chr4	168004478	rs7654164	A	G	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	169299528	rs13110927	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	169299676	rs10517990	T	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	169301059	rs1489232	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	169312798	rs150634123	A	AG	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.900;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr4	169312801	rs6840397	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.921;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.376;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:41,63:0.61:104
chr4	169315571	rs11337868	TA	T	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	169315760	rs3749499	C	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	169317081	rs1826028	C	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	169317279	rs3857035	C	T	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	169336662	rs4692661	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	169340639	rs1021318	C	A	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	169341435	rs2130145	A	G	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	169341608	rs141226900	TACACATACACACACACACAC	T	1580.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=64.39;MQRankSum=0.944;QD=35.13;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr4	169362557	rs13151700	C	G	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr4	169369820	rs2712113	T	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	169369853	rs2712114	A	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	169369920	rs12507582	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	169374487	rs2634953	A	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	169382822	rs5863935	A	AC	667.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	169393179	rs12505232	T	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	169393595	rs13149639	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	169393972	rs113626526	G	GA	2696.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	169589214	rs2723705	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	169606649	rs62333891	C	A	11994.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr4	169612528	rs4260495	C	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	169799448	rs62333013	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr4	169812313	rs6827082	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	169835048	rs1532651	C	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	169846255	rs3733656	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	169846359	rs66895777	GCT	G	1566.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	169847646	rs35375934	TA	T	139.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	169923395	.	TAA	T	1953	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=2;MGOF=44;MMLQ=27;MQ=58.73;NF=2;NR=27;PP=1953;QD=68.2413793103;SC=AAAAGCGTATTAAATTCAATT;SbPval=0.3;Source=Platypus;TC=53;TCF=2;TCR=51;TR=29;WE=169923404;WS=169923385;set=Platypus	GT:AD:AF:DP	0/1:24,29:0.55:53
chr4	169928842	rs2877380	G	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	169931268	rs28371817	G	A	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	169931274	rs2279038	G	A	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.84;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	169931288	rs2279039	T	C	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.92;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	169931326	.	CAA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.196;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	170017860	rs1471172	G	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	170315496	rs4692721	C	T	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	170354836	rs7680152	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	170354873	rs13139925	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	170428352	rs11335570	G	T	429.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.740;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.65;ReadPosRankSum=1.737;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr4	170482883	rs56064008	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	170506703	rs55679731	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	170581570	rs4692739	G	A	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	170584703	rs34755939	C	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	170616918	rs2062609	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	170623928	.	C	CAAA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.27;ReadPosRankSum=1.483;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	170628524	rs9996636	A	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	170663235	rs1047642	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	170663321	rs6849004	C	G	130.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	170663381	.	ACC	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.93;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr4	170678993	rs11540095	T	C	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	170985855	rs201368750	A	ACCT	17677.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=45.33;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr4	170987636	rs1480544	A	G	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr4	170989708	.	C	CAA	197.73	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	170990029	rs17628775	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	170994554	rs5864015	GT	G	1426.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	170999860	rs2622068	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	172735897	rs3796654	C	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	172973421	rs1505494	G	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	172973423	rs10572855	CAG	C	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	172973580	rs1505495	C	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	173232679	rs2136033	A	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	173232805	rs9312524	G	A	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	173873170	rs11322401	TG	T	1881.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	173930479	rs4696042	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	174090004	rs3733477	G	A	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	174216747	rs59212575	C	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	174225375	rs181188088	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	174235094	rs142053913	A	ATAT	327.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.901;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr4	174253422	rs73005356	T	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	174310777	rs4695833	A	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	174450288	rs59621536	G	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	174450536	.	AC	A	190.75	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	174537063	rs4413383	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	175184404	.	C	G	38	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=20;MQ=60.0;NF=0;NR=4;PP=38;QD=18.1928031368;SC=CTAAGAATAGCTGGAAAATTA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=175184412;WS=175184394;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	175225344	.	A	ATAAT	1151.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	175225452	rs4695918	G	A	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	175237408	rs1553669	T	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	175414246	rs2612694	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	175580119	rs6553802	T	C	137.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	175598334	rs6812439	T	C	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	175688138	rs7696263	A	G	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	175688274	rs10551381	TACAC	T,TAC	662.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.56;SOR=1.230;set=HC	GT:AD:AF:DP	1/2:0,8,13:0.38,0.62:21
chr4	176561124	rs140208564	GACTT	G	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	176733450	rs62338073	G	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	176733452	rs113129787	G	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	177040878	rs9993621	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	177049854	rs28698547	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	177049880	rs28607147	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	177050057	rs78649239	G	A	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	177050062	rs71830098	CTATCAAATAAAA	C	262.75	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	177052925	rs7699831	G	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr4	177058524	rs9884639	A	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	177058580	rs9884643	A	T	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	177063096	rs9995480	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	177071506	rs7356435	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	177072873	rs6825591	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	177073026	rs4690661	G	A	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr4	177077109	rs147362569	CT	C	1136.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	177077401	rs28693011	G	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	177083166	rs2877924	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	177095925	rs73005157	G	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	177137988	rs6827525	C	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	177142548	rs17062631	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	177142776	rs10032098	C	A	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	177143664	rs6553937	C	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	177249533	rs2278903	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	177605081	rs5864401	CTCA	C	6427.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	177608775	rs4604006	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	177608875	rs4529000	A	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	177609203	rs13136065	G	A	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	177609259	rs2877962	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	177609264	rs2333495	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	177713288	rs115464473	G	A	17732.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:6,692:0.99:698
chr4	178167282	rs1347894	G	A	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr4	178167318	rs11737096	G	A	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	178231152	rs10013040	C	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	178256759	rs3215157	CA	C	70.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=14.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	178256913	rs7689099	C	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	178257516	rs2271102	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	178261034	rs36204377	GTGTAAAA	G	2129.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	178272748	rs1054753	G	A	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	178274565	rs2048074	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	178274694	rs10007075	T	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	178274750	rs13112358	C	T	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	178274835	rs13112390	A	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	178281754	rs1876268	G	A	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	178283370	rs6820069	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	178355668	rs4690521	C	G	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	178359719	rs2271101	A	G	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	178882120	rs9994032	A	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	178887811	rs35244240	C	CTTTT	1630.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;QD=39.77;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	178887815	rs28409849	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;QD=43.84;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	183267728	rs33933747	TA	T	122.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.671;QD=10.20;ReadPosRankSum=-0.108;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	183268148	rs11373586	C	CG	702.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	183268174	rs6552554	C	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	183271186	rs10644033	G	GAA	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	183601590	rs34738241	A	AG	125	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.000;QD=13.89;ReadPosRankSum=-0.282;SOR=2.515;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	183650026	rs5864796	GA	G	122.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.67;ReadPosRankSum=1.286;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	183652175	rs10866256	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	183664522	rs7654255	T	C	8996.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:4,360:0.99:364
chr4	183665437	rs6835335	C	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	183673247	.	T	A	206	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=1;HapScore=2;MGOF=64;MMLQ=27;MQ=60.0;NF=2;NR=8;PP=206;QD=24.0771212547;SC=AAAAAGGGGTTGAAAATCCAT;SbPval=0.61;Source=Platypus;TC=10;TCF=2;TCR=8;TR=10;WE=183673255;WS=183673237;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	183673286	rs139756555	T	TCTAA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	183674577	rs13130747	G	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	183815688	rs4742	A	G	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr4	183838025	rs13114262	A	G	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr4	184170025	rs907357	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	184171187	rs10020261	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	184190355	rs11407064	A	AC	5255.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	184190535	rs6858486	G	A	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	184202148	rs11132174	G	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	184203706	rs2871353	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	184243528	rs7688467	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	184426387	rs8872	C	T	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	184426526	rs6552675	A	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	184570723	rs58975219	TA	T	843.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=2.296;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:6,49:0.89:55
chr4	184570891	rs6552694	T	C	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	184572218	rs73002706	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	184618936	rs62617790	G	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr4	184931818	rs4861597	G	A	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	184932609	rs4862282	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	185012398	rs4479748	T	C	9904.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr4	185075033	rs35344477	A	AT	286.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	185340725	.	G	GA	836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-2.140;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:7,50:0.88:57
chr4	185550779	.	T	TA	30	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=0.9998;HP=14;HapScore=2;MGOF=15;MMLQ=27;MQ=62.36;NF=0;NR=2;PP=30;QD=19.5;SC=GTCATACAAATAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=185550787;WS=185550769;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr4	185553098	rs2705897	T	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	185559487	rs2705901	G	C	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	185578363	rs111852106	G	A	8986.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr4	185583092	rs60624489	C	CTATT	3426.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.88;QD=43.38;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	185587165	rs2463447	A	G	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	185612953	rs2696035	A	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	185615567	rs139656616	G	GTATC	1008.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	185616438	rs13478	C	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	185631121	.	AC	A	232.74	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	185637418	rs2077205	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	185652201	rs7675046	G	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	185681475	rs6825554	G	C	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	185683840	rs939040	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	185686032	rs2292898	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	185686856	rs3792314	C	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	185686948	.	A	AAC	7116.73	.	AC=1;AF=0.500;AN=2;DP=314;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:58,231:0.80:289
chr4	185698183	rs78251730	T	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	185735961	rs111872414	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	185736113	rs2280297	G	C	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	185772384	rs1032299	A	G	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	185999348	rs10023344	T	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	185999543	rs6841061	G	A	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.50;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	185999587	rs6818170	T	A	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	186064502	rs3733652	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	186065844	rs34795113	C	CT	297.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	186097263	rs113459393	C	CTTTTG	1086.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.94;QD=40.25;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	186097284	rs8180220	T	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	186111278	rs76801972	A	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	186112111	rs3108237	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr4	186112369	rs34825796	G	GA	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	186168387	rs3108252	T	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	186170289	.	CAT	C	2846.73	.	AC=2;AF=1.00;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	186170358	rs3108229	G	A	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	186272773	rs3822302	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	186274541	rs11724024	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	186288457	rs201722354	CT	C	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-1.530;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr4	186294198	rs3797026	C	T	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	186299260	rs2030802	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	186299519	rs1288549	A	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	186320666	rs11287696	TA	T	491.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr4	186321067	rs1053218	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	186321447	rs3733646	C	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	186323209	rs3733645	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	186323593	rs6552880	C	T	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	186324841	rs13126680	T	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	186336583	rs10032989	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	186339584	rs10003160	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	186347055	rs2289720	G	A	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	186347073	rs11132303	G	C	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	186347092	rs10866275	T	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	186357523	rs7697970	C	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	186361876	rs4476640	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	186366315	rs2120414	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	186366809	rs6833872	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	186378790	rs4279261	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	186379104	rs7664578	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	186379371	rs7687202	G	A	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	186379735	rs6827370	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	186391759	rs28715304	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	186391868	rs28581909	T	C	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	186391898	rs66481949	C	T	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	186392287	rs57923780	C	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=38.53;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	186392299	rs59315434	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.40;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	186392299	.	AAC	GAA	706	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=101;MMLQ=26;MQ=59.45;NF=4;NR=19;PP=706;QD=33.0203423853;SC=GGGCAGGGCTAACGGCTGGGG;SbPval=0.57;Source=Platypus;TC=23;TCF=4;TCR=19;TR=23;WE=186392309;WS=186392277;set=Platypus	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	186392301	rs56757447	C	A	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=42.72;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	186393233	rs33974317	GTT	G	5210.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:11,176:0.94:187
chr4	186393372	rs11940504	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=26.83;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	186423637	rs4635850	G	A	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	186423677	rs10866276	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	186427841	rs2306705	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	186444698	rs4862543	A	C	297.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186444704	rs4861669	C	T	297.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186456617	rs4862545	A	G	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	186510778	rs1160906	A	AAACTC	3156.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	186510829	rs2077697	A	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	186528433	rs13144963	T	C	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	186545728	rs3841443	TA	T	238.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	186572791	rs4862557	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	186598546	rs78467275	C	T	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	186611551	rs6823677	G	A	172.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	186611656	rs61116773	G	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	187026395	rs73025977	C	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	187072932	rs2276914	A	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	187073000	rs2276913	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	187073030	rs2276912	T	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	187074833	rs4862650	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	187075474	rs6552958	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	187077206	rs4862653	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	187078785	rs2276924	A	G	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	187078819	rs2276923	C	G	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	187079017	rs1877321	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	187083964	rs71593679	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.661;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr4	187086150	rs73027974	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	187086468	rs76127763	G	A	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	187088248	rs9991339	C	T	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	187092960	rs7694300	A	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	187093018	rs4241814	G	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	187113041	rs1055138	C	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	187115632	rs10013653	C	A	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr4	187115841	rs7682918	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	187118040	rs112367913	TTC	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	187118662	rs4862662	G	T	7329.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr4	187120211	rs13146272	C	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	187122304	rs3817184	C	T	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	187122319	rs3736455	T	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	187130198	rs2276918	A	G	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	187149540	rs1912826	G	A	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	187158034	rs3733402	G	A	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	187159282	rs4253256	G	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	187171355	rs4253299	A	G	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	187171404	rs4253373	C	A	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr4	187172420	rs4253376	C	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	187178473	rs4253325	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	187178599	rs4253326	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	187179210	rs925453	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	187202977	rs3775306	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	187207535	rs2289253	G	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	187207715	rs2289254	C	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	187208745	.	AAT	A	189.77	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	187209054	rs200811755	G	GT	1573.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=0.000;QD=21.27;ReadPosRankSum=-0.367;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr4	187209559	rs5966	A	G	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	187209702	rs5971	G	T	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	187511861	rs1973352	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	187513623	rs3836618	TA	T	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	187516880	rs1298865	A	G	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr4	187518976	rs2306990	C	T	12429.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	187518980	rs1280096	T	C	12247.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	187519206	rs1280097	C	G	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	187521037	rs10009030	C	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	187525020	rs2637777	A	C	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	187527472	rs2584344	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	187530313	rs4862722	C	T	2257.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=1.120;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:2,90:0.98:92
chr4	187531022	rs28647489	A	G	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	187534363	rs2249916	G	A	7159.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	187534542	rs2249926	T	A	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	187538133	rs1280100	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	187538942	rs1280098	T	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	187542755	rs28489116	T	C	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	187542986	rs28423024	G	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	187554789	rs114340692	C	T	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	187557893	rs328418	T	C	9745.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr4	187561080	rs10001377	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.23;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	187584771	rs172903	C	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	187627659	rs200130748	TA	T	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.159;QD=3.34;ReadPosRankSum=-0.220;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:92,61:0.40:153
chr4	187627792	rs11939575	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr4	187628398	rs1877731	C	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	187629140	rs367863	G	C	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	187630590	rs3733415	G	A	9689.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr4	187630989	rs17077740	C	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	188924979	rs6815391	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	189060610	rs11934889	G	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	189061106	rs13131525	G	A	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	189061223	rs13131409	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	189063361	rs70938702	CGTGTGT	C,CGT	955.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/1:1.00:23
chr4	189064952	rs28463290	C	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	189065104	rs9784566	T	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	189065435	rs34012483	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	189065441	rs11940227	G	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	189660773	rs199677712	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=0.389;QD=4.34;ReadPosRankSum=-0.109;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	190329166	.	GCA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.275;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr4	190394938	rs138612273	CAAGAAG	C	1548.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	190862035	rs10031390	C	G	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	190862042	rs10031571	G	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	190862083	rs1138726	TC	CG	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	190862103	rs4145513	C	T	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	190862126	rs4263440	A	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	190862142	rs2411529	C	T	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr4	190862154	rs2898747	T	C	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	190862182	rs2411530	C	T	7493.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr4	190862881	rs4863304	A	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	190876195	rs7684300	C	T	2205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=15.954;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-15.244;QD=6.21;ReadPosRankSum=-6.692;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:267,88:0.25:355
chr4	190876204	rs3207892	G	A	3279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.082;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=25.955;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-16.035;QD=8.39;ReadPosRankSum=-5.827;SOR=1.602;set=HC	GT:AD:AF:DP	0/1:276,115:0.29:391
chr4	190876242	rs1061653	G	A	3940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-15.436;QD=9.83;ReadPosRankSum=3.804;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:224,177:0.44:401
chr4	190876256	rs140599307	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=10.063;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-4.972;QD=1.38;ReadPosRankSum=3.859;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:337,51:0.13:388
chr4	190876293	rs201142987	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=5.623;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-1.841;QD=0.26;ReadPosRankSum=0.877;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:284,23:0.07:307
chr4	190876314	.	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=6.446;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=-0.557;QD=0.16;ReadPosRankSum=1.499;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:240,19:0.07:259
chr4	190876319	rs77450681	A	T	3833.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:86,151:0.64:237
chr4	190876349	rs199599460	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr4	190878463	rs62345288	T	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.305;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.129;MLEAC=1;MLEAF=0.500;MQ=49.18;MQRankSum=-3.059;QD=3.02;ReadPosRankSum=1.444;SOR=2.746;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr4	190878472	rs12641802	A	G	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=8.104;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=2.893;QD=19.54;ReadPosRankSum=-1.422;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,38:0.86:44
chr4	190878485	rs62345289	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=8.432;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-2.783;QD=1.19;ReadPosRankSum=2.315;SOR=2.904;set=HC	GT:AD:AF:DP	0/1:42,5:0.11:47
chr4	190878506	rs12643923	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=11.398;MLEAC=1;MLEAF=0.500;MQ=46.14;MQRankSum=-2.916;QD=1.74;ReadPosRankSum=1.522;SOR=3.328;set=HC	GT:AD:AF:DP	0/1:45,6:0.12:51
chr4	190878538	rs34697501	A	AT	4336.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.96;QD=47.66;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	190878562	.	G	C	188.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=51.00;MQRankSum=3.491;QD=0.65;ReadPosRankSum=-2.387;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:250,41:0.14:291
chr4	190878563	rs137858630	C	A	485.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=2.391;QD=1.61;ReadPosRankSum=-1.951;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:249,52:0.17:301
chr4	190878569	.	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQRankSum=-1.111;QD=2.58;ReadPosRankSum=-1.125;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:297,40:0.12:337
chr4	190878571	.	G	A	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-0.797;QD=2.49;ReadPosRankSum=-2.246;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:303,47:0.13:350
chr4	190878596	.	G	A	1506.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-1.651;QD=2.64;ReadPosRankSum=0.794;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:499,71:0.12:570
chr4	190878597	rs62345290	C	T	6545.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.275;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-0.242;QD=11.32;ReadPosRankSum=-0.893;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:281,297:0.51:578
chr4	190878599	.	A	G	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;ClippingRankSum=0.000;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.76;MQRankSum=-1.635;QD=2.64;ReadPosRankSum=0.370;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:522,76:0.13:598
chr4	190878608	.	G	A	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.17;MQRankSum=-2.797;QD=2.37;ReadPosRankSum=0.448;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:591,87:0.13:678
chr4	190878661	rs62345291	A	T	7031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=53.47;MQRankSum=-3.081;QD=9.14;ReadPosRankSum=-0.677;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:421,348:0.45:769
chr4	190878729	rs201450141	A	G	2638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.593;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=39.713;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=-12.390;QD=15.34;ReadPosRankSum=-5.501;SOR=2.973;set=HC	GT:AD:AF:DP	0/1:96,76:0.44:172
chr4	190878731	rs201154783	GG	CA	2641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.771;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=53.969;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.47;MQRankSum=-11.870;QD=17.04;ReadPosRankSum=-5.174;SOR=4.011;set=HC	GT:AD:AF:DP	0/1:91,64:0.41:155
chr4	190878750	rs113800771	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.858;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=15.399;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-6.224;QD=2.16;ReadPosRankSum=1.197;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr4	190882973	rs78181874	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-7.001;QD=2.03;ReadPosRankSum=3.972;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr4	190884225	rs150701093	T	TTTC	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	190903759	rs201249383	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	140532	rs12516846	T	C	12168.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr5	140788	rs12516245	A	G	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.57;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	140813	rs73022563	G	T	3439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.443;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:138,167:0.55:305
chr5	143041	rs11954199	T	A	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	143197	rs11949577	G	A	15508.77	.	AC=1;AF=0.500;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	0/1:399,726:0.65:1125
chr5	143534	rs13436090	G	A	21701.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:2,837:1.00:839
chr5	145147	rs16900746	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	155137	rs11745772	G	A	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr5	155367	rs9312845	C	T	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	155629	rs9312850	C	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	155671	rs10076077	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	156180	rs6554829	G	A	10636.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr5	156287	rs6554830	G	A	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:3,368:0.99:371
chr5	161794	rs73014661	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr5	162816	rs75374323	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:61,20:0.25:81
chr5	163205	rs3810870	G	C	18917.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr5	163260	rs29674	A	C	17581.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.78;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr5	163260	.	ACCCTGC	CCCCTGC,CCCCTGG	1940	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=23;MMLQ=27;MQ=59.9;NF=126,71;NR=120,54;PP=1466,1940;QD=6.10069598596;SC=GGACGGGGAGACCCTGCGCCC;SbPval=0.57;Source=Platypus;TC=247;TCF=126;TCR=121;TR=246,125;WE=163274;WS=163250;set=Platypus	GT:AF:DP	0/1:1.00:247
chr5	163266	rs3810867	C	G	5592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-2.735;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:204,276:0.57:480
chr5	163622	rs3810866	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:170,105:0.38:275
chr5	163769	rs29675	G	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	169361	rs13159868	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.458;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr5	169763	rs1108868	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,64:0.67:96
chr5	171569	rs4956981	T	C	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	171643	rs13171103	C	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	172971	rs6868964	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr5	173200	rs6885136	C	T	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:76,139:0.65:215
chr5	173258	rs6893369	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr5	173927	rs6898413	A	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr5	174240	rs6875054	GC	AA	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;JOINED;set=Intersection	GT:AD:AF:DP	0/1:48,81:0.63:129
chr5	174267	rs6862729	A	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr5	181499	rs61710713	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	181954	rs62346474	A	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr5	192337	.	C	T	6586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=1142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.784;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:733,385:0.34:1118
chr5	195318	rs6886707	T	C	30856.77	.	AC=2;AF=1.00;AN=2;DB;DP=1215;set=Intersection	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr5	205320	rs6884639	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr5	205574	rs73730755	G	A	14103.77	.	AC=1;AF=0.500;AN=2;DB;DP=1066;set=Intersection	GT:AD:AF:DP	0/1:392,660:0.63:1052
chr5	206016	rs11557427	C	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:177,111:0.39:288
chr5	218356	rs2303741	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	218381	rs3214561	T	TC	796.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.51;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	218487	rs187964306	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-0.674;QD=15.96;ReadPosRankSum=0.763;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr5	220417	rs56232088	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.374;QD=3.95;ReadPosRankSum=-0.629;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:116,44:0.28:160
chr5	220433	rs56035544	T	TG	3912.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	223807	rs3213839	C	T	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	224418	rs7732389	T	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	224633	rs1139424	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	224692	rs7705721	G	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	225709	rs35464369	G	A	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:67,120:0.64:187
chr5	225773	rs115037335	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.167;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr5	225773	.	CA	TG	168	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=2;MGOF=23;MMLQ=28;MQ=60.0;NF=3;NR=11;PP=168;QD=15.8191339187;SC=ATGTGGCAGCCAAAAGAATGG;SbPval=0.82;Source=Platypus;TC=40;TCF=12;TCR=28;TR=14;WE=225782;WS=225763;set=Platypus	GT:AD:AF:DP	0/1:26,14:0.35:40
chr5	225774	rs61492827	A	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.65;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	225796	rs56342538	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	226160	rs6555055	A	C	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	226222	rs6555056	T	C	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	226264	rs6555057	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	228362	rs2115272	T	C	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr5	230822	rs10069197	G	C	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=44.41;SOR=1.777;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	230828	rs10074958	C	T	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=47.29;SOR=1.870;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	230835	rs113561013	T	C	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.25;QD=45.44;SOR=1.858;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	230850	rs73730775	G	A	8398.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=45.40;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	230856	rs73033205	C	T	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=43.41;SOR=1.405;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	230980	rs2288461	A	G	18378.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:2,717:1.00:719
chr5	231111	rs1126417	T	C	12254.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr5	233560	rs7725241	G	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:58,86:0.60:144
chr5	233572	rs7710005	A	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	233734	rs1041949	C	G	27288.77	.	AC=2;AF=1.00;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	1/1:2,1063:1.00:1065
chr5	235364	rs35277230	C	T	9904.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:275,446:0.62:721
chr5	235548	rs10060259	T	C	16594.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr5	235608	rs10058428	A	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	236753	rs10057677	C	T	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.18;QD=40.35;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	236760	rs10057678	C	A	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.38;QD=47.65;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	251419	rs10041187	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.05;QD=33.90;SOR=7.614;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	251469	rs10039029	G	A	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	251541	rs77210621	A	G	11139.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr5	251565	rs1126538	T	C	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:366,130:0.26:496
chr5	251703	rs111797600	TG	T	39604.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.77;MQRankSum=3.059;QD=43.05;ReadPosRankSum=0.964;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:4,916:1.00:920
chr5	251707	.	T	C	39635.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DP=902;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.63;MQRankSum=3.016;QD=44.09;ReadPosRankSum=0.251;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:4,895:1.00:899
chr5	251784	rs10041277	C	T	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr5	256434	rs372662724	ACT	A	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-22.921;QD=0.39;ReadPosRankSum=-1.355;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:590,51:0.08:641
chr5	256472	rs6961	G	A	19699.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=26.06;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,756:1.00:756
chr5	256509	rs6962	G	A	7463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=6.396;QD=12.22;ReadPosRankSum=2.186;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:246,365:0.60:611
chr5	306683	rs73033922	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr5	311478	rs2244029	T	C	35951.77	.	AC=2;AF=1.00;AN=2;DB;DP=1409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,1391:1.00:1391
chr5	311562	rs6555159	G	A	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	314011	rs4957018	G	A	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:1,337:1.00:338
chr5	314518	rs1574220	T	C	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr5	314749	rs73734221	C	T	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:219,111:0.34:330
chr5	344218	rs6887387	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr5	354051	rs2013782	T	C	8733.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	376809	rs35008248	T	C	6050.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:199,292:0.59:491
chr5	421647	rs10068732	A	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	423918	rs116223172	C	G	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	424125	rs76171166	G	A	8765.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	433952	rs2672724	C	T	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	434981	rs2672725	G	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	435055	rs2672779	G	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	453567	rs2672722	G	A	16303.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr5	456915	rs2721010	A	G	11849.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr5	457955	rs2251843	A	G	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	462465	rs890972	C	A	10047.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr5	462556	rs2081942	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	465510	rs1035908	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	466075	rs10474780	G	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	466811	rs2434697	T	C	11544.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr5	472951	rs890974	T	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr5	473368	rs34674918	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	474945	.	AG	A	731	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=5;HapScore=1;MGOF=67;MMLQ=27;MQ=59.61;NF=8;NR=10;PP=731;QD=42.2777777778;SC=GGAGACCTGGAGGGAGAGGAG;SbPval=0.52;Source=Platypus;TC=19;TCF=8;TCR=11;TR=18;WE=474953;WS=474935;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr5	474974	rs2721018	C	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	475104	rs2247114	A	G	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	475346	rs2247107	A	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	476530	rs2244240	C	G	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	476848	rs890976	C	T	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	476910	rs890977	T	C	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	477303	rs890980	A	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	477639	rs890981	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	478574	rs3832380	GGGGGCGCA	G	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	478598	rs3734140	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	478655	rs3734141	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	479879	rs376525752	G	GC	2361.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	479905	rs890986	A	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	481610	rs6872510	T	C	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	482151	rs11385633	G	GC	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.238;QD=15.12;ReadPosRankSum=-1.010;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:14,35:0.71:49
chr5	482186	rs9885312	C	G	7495.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=27.97;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	482653	rs3777230	T	C	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	619022	rs1617985	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	619333	rs1709531	T	C	8837.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr5	620050	rs144222017	C	CTGGTAAT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.517;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr5	633915	rs62001013	G	A	6806.77	.	AC=1;AF=0.500;AN=2;DB;DP=1228;set=Intersection	GT:AD:AF:DP	0/1:813,401:0.33:1214
chr5	665280	rs1697963	T	C	6006.77	.	AC=1;AF=0.500;AN=2;DB;DP=1128;set=Intersection	GT:AD:AF:DP	0/1:743,365:0.33:1108
chr5	666323	rs1697964	A	G	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:127,86:0.40:213
chr5	677741	rs7713958	C	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	678062	rs450628	A	G	16295.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr5	678079	rs7737452	G	A	6507.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:228,308:0.57:536
chr5	716953	rs11748638	C	T	24835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=4620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=0.444;QD=5.39;ReadPosRankSum=0.455;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:3091,1515:0.33:4606
chr5	733744	rs151215390	C	T	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960;ClippingRankSum=0.000;DB;DP=1169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=3.931;QD=1.14;ReadPosRankSum=1.189;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:985,174:0.15:1159
chr5	733767	rs55778145	T	C	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821;ClippingRankSum=0.000;DB;DP=1891;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-14.255;QD=1.44;ReadPosRankSum=-1.579;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:1547,301:0.16:1848
chr5	733915	.	T	TAA	2620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.169;ClippingRankSum=0.000;DP=3798;ExcessHet=3.0103;FS=18.152;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-38.611;QD=0.72;ReadPosRankSum=-11.135;SOR=2.961;set=HC	GT:AD:AF:DP	0/1:3328,305:0.08:3633
chr5	733917	.	G	T	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=20.874;ClippingRankSum=0.000;DP=3595;ExcessHet=3.0103;FS=15.724;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-40.087;QD=0.81;ReadPosRankSum=-11.752;SOR=2.993;set=HC	GT:AD:AF:DP	0/1:3291,282:0.08:3573
chr5	733919	.	CAT	C	1707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=25.264;ClippingRankSum=0.000;DP=3509;ExcessHet=3.0103;FS=13.374;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-42.109;QD=0.49;ReadPosRankSum=-10.798;SOR=3.210;set=HC	GT:AD:AF:DP	0/1:3236,251:0.07:3487
chr5	733926	rs4342366	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=22.610;ClippingRankSum=0.000;DB;DP=3163;ExcessHet=3.0103;FS=18.123;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-43.476;QD=0.12;ReadPosRankSum=-10.241;SOR=3.472;set=HC	GT:AD:AF:DP	0/1:2936,209:0.07:3145
chr5	741631	.	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=39.72;MQRankSum=0.180;QD=12.11;ReadPosRankSum=-0.000;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	741736	rs61128505	G	T	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.04;QD=25.57;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	741896	rs149714758	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr5	745275	rs436541	A	T	16036.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.60;QD=27.32;SOR=1.832;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr5	748243	rs57785304	C	T	12016.77	.	AC=1;AF=0.500;AN=2;DB;DP=1699;set=Intersection	GT:AD:AF:DP	0/1:1049,638:0.38:1687
chr5	748477	rs3817066	A	C	29576.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.88;MQRankSum=-1.157;QD=45.36;ReadPosRankSum=1.501;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:1,651:1.00:652
chr5	748482	rs3817065	G	C	27921.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.15;QD=40.58;SOR=1.548;set=HC	GT:AD:AF:DP	1/1:0,688:1.00:688
chr5	748494	rs146590679	C	T	3939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=3.022;QD=3.80;ReadPosRankSum=-1.948;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:784,254:0.24:1038
chr5	748594	rs3817064	T	C	3035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.795;ClippingRankSum=0.000;DB;DP=3573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-17.536;QD=0.85;ReadPosRankSum=6.066;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:3012,545:0.15:3557
chr5	748621	rs3817063	C	G	3315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383;ClippingRankSum=0.000;DB;DP=3612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-18.910;QD=0.92;ReadPosRankSum=3.687;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:3042,550:0.15:3592
chr5	748753	rs3817060	T	G	5095.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:235,240:0.51:475
chr5	748771	rs3817059	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.706;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-11.125;QD=0.68;ReadPosRankSum=3.152;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:302,29:0.09:331
chr5	751156	rs372599554	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=-1.062;QD=3.85;ReadPosRankSum=0.532;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	751229	rs200795910	G	T	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=50.93;MQRankSum=-0.396;QD=28.29;ReadPosRankSum=2.881;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:23,52:0.69:75
chr5	751235	rs192435256	G	A	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=50.55;MQRankSum=-0.440;QD=27.04;ReadPosRankSum=3.386;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:30,56:0.65:86
chr5	751256	rs183666382	C	A	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=-1.577;QD=19.85;ReadPosRankSum=2.088;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:55,79:0.59:134
chr5	751348	rs200619518	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.003;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=32.124;MLEAC=1;MLEAF=0.500;MQ=46.36;MQRankSum=-5.674;QD=0.59;ReadPosRankSum=-0.184;SOR=4.153;set=HC	GT:AD:AF:DP	0/1:107,18:0.14:125
chr5	751451	.	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=0.946;QD=2.17;ReadPosRankSum=2.390;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:102,15:0.13:117
chr5	751455	.	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=0.822;QD=1.92;ReadPosRankSum=2.324;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:108,15:0.12:123
chr5	751470	rs4957098	A	G	2907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=1.089;QD=17.41;ReadPosRankSum=2.282;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:44,123:0.74:167
chr5	756226	rs370921373	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.67;MQRankSum=1.031;QD=12.32;ReadPosRankSum=-0.760;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	756307	rs367198	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.30;QD=25.94;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	766910	rs1809933	C	T	60697.77	.	AC=1;AF=0.500;AN=2;DB;DP=3645;set=Intersection	GT:AD:AF:DP	0/1:904,2703:0.75:3607
chr5	766939	rs4957103	G	A	16568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=2964;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=3.186;QD=5.63;ReadPosRankSum=-1.955;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:2166,775:0.26:2941
chr5	767033	rs1809932	A	C	45204.77	.	AC=1;AF=0.500;AN=2;DB;DP=2558;set=Intersection	GT:AD:AF:DP	0/1:586,1951:0.77:2537
chr5	767064	rs73019616	C	T	7898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=2764;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.409;QD=2.89;ReadPosRankSum=-0.779;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:2115,615:0.23:2730
chr5	767084	rs111384701	C	T	4289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=2696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.118;QD=1.61;ReadPosRankSum=-0.341;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:2188,472:0.18:2660
chr5	795933	rs1057011	C	G	64170.77	.	AC=1;AF=0.500;AN=2;DB;DP=3760;set=Intersection	GT:AD:AF:DP	0/1:2047,1698:0.45:3745
chr5	795947	rs1057010	C	T	74841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.019;ClippingRankSum=0.000;DB;DP=4114;ExcessHet=3.0103;FS=4.132;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-13.517;QD=18.28;ReadPosRankSum=2.927;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:2255,1840:0.45:4095
chr5	795954	.	CAGTACTATGCTCCCATTTCCG	C	12188.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=4684;set=Intersection	GT:AD:AF:DP	0/1:2645,872:0.25:3517
chr5	795975	.	G	GAGTACTGTGAACTCCCCTTTCCC	7134.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=4385;set=Intersection	GT:AD:AF:DP	0/1:3039,536:0.15:3575
chr5	796008	rs199757139	GGCTCCCATTTCCCAGTACTGT	G	98473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.203;ClippingRankSum=0.000;DB;DP=5456;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=7.256;QD=18.23;ReadPosRankSum=8.085;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:2829,2573:0.48:5402
chr5	796047	rs33929417	CTG	C	38602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=5770;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-9.622;QD=7.93;ReadPosRankSum=-4.529;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:3646,1225:0.25:4871
chr5	796064	rs144616948	T	TCAGTACTGTATGCCCATTTCC	7906.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DB;DP=5921;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-1.776;QD=1.48;ReadPosRankSum=3.750;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:4598,757:0.14:5355
chr5	796354	rs113926340	C	T	3251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526;ClippingRankSum=0.000;DB;DP=2037;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-0.490;QD=1.61;ReadPosRankSum=-0.851;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1667,350:0.17:2017
chr5	796437	rs140929317	T	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-15.888;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.92;MQRankSum=-2.372;QD=2.62;ReadPosRankSum=-1.796;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:430,95:0.18:525
chr5	801172	rs10462848	C	T	28075.77	.	AC=1;AF=0.500;AN=2;DB;DP=1660;set=Intersection	GT:AD:AF:DP	0/1:380,1277:0.77:1657
chr5	814733	rs6879268	A	C	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:66,123:0.65:189
chr5	815052	.	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.107;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr5	819671	rs3747738	C	T	6381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=1549;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.334;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:1093,426:0.28:1519
chr5	822109	rs12655323	C	A	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:16,78:0.83:94
chr5	822123	rs12656150	A	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr5	823820	rs2277058	A	G	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:62,118:0.66:180
chr5	823890	rs2277059	A	T	10010.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:226,463:0.67:689
chr5	824024	rs111391863	CA	GG	18190.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;JOINED;set=Intersection	GT:AD:AF:DP	0/1:145,448:0.76:593
chr5	824172	rs67757774	G	A	7481.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:231,338:0.59:569
chr5	824190	rs67828407	G	A	9745.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:281,432:0.61:713
chr5	824291	rs67912577	C	A	27246.77	.	AC=1;AF=0.500;AN=2;DB;DP=1675;set=Intersection	GT:AD:AF:DP	0/1:421,1243:0.75:1664
chr5	824412	rs151045780	G	GAAATAAA	4236.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:66,106:0.62:172
chr5	825160	rs1807037	A	C	18206.77	.	AC=1;AF=0.500;AN=2;DB;DP=1082;set=Intersection	GT:AD:AF:DP	0/1:283,771:0.73:1054
chr5	825280	rs1809008	C	T	92502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=5304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-8.685;QD=17.59;ReadPosRankSum=-0.468;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1271,3988:0.76:5259
chr5	834075	rs1260864	G	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr5	837556	rs28449575	T	G	7583.77	.	AC=1;AF=0.500;AN=2;DB;DP=1099;set=Intersection	GT:AD:AF:DP	0/1:699,393:0.36:1092
chr5	840192	rs390797	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	840506	rs7701283	C	T	17949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.198;ClippingRankSum=0.000;DB;DP=1186;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=49.84;MQRankSum=-22.598;QD=15.20;ReadPosRankSum=1.277;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:341,840:0.71:1181
chr5	840644	rs200038670	G	C	3401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.411;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-25.494;QD=4.19;ReadPosRankSum=-10.639;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:624,188:0.23:812
chr5	840661	rs201008730	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-24.751;QD=0.58;ReadPosRankSum=-5.970;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:693,60:0.08:753
chr5	840785	rs200106329	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-12.827;QD=0.18;ReadPosRankSum=5.687;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:363,52:0.13:415
chr5	843623	.	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-2.241;QD=1.81;ReadPosRankSum=1.524;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr5	843658	.	A	G	1260	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=5;HapScore=2;MGOF=36;MMLQ=24;MQ=40.13;NF=75;NR=2;PP=1260;QD=16.8152105526;SC=CGATACTACCACCCGGAAAGA;SbPval=1.0;Source=Platypus;TC=179;TCF=143;TCR=36;TR=77;WE=843666;WS=843648;set=Platypus	GT:AD:AF:DP	0/1:102,77:0.43:179
chr5	843696	rs143771442	G	T	7727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.67;MQRankSum=-6.550;QD=15.97;ReadPosRankSum=-4.197;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:127,357:0.74:484
chr5	843702	rs3863147	G	A	18863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-8.580;QD=32.75;ReadPosRankSum=-5.755;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:101,475:0.82:576
chr5	843723	rs3863148	C	A	12725.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:271,612:0.69:883
chr5	843766	rs76685897	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=1125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.58;MQRankSum=-3.556;QD=0.26;ReadPosRankSum=0.040;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:976,147:0.13:1123
chr5	843815	rs71591190	C	T	7475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-5.673;QD=9.85;ReadPosRankSum=2.112;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:371,388:0.51:759
chr5	843903	.	A	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-0.437;QD=1.95;ReadPosRankSum=-2.369;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:74,9:0.11:83
chr5	843906	.	T	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.26;MQRankSum=-0.917;QD=2.40;ReadPosRankSum=-2.335;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:75,10:0.12:85
chr5	843918	rs369032492	G	A	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=47.73;MQRankSum=0.256;QD=7.91;ReadPosRankSum=-2.188;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr5	843920	.	G	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.495;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=4.362;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=2.291;QD=3.34;ReadPosRankSum=-3.665;SOR=1.526;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr5	843928	.	GGTGT	G	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.568;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=11.948;MLEAC=1;MLEAF=0.500;MQ=48.63;MQRankSum=3.743;QD=5.71;ReadPosRankSum=-4.247;SOR=2.163;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr5	843936	.	CGGGGTGG	C	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.152;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=13.962;MLEAC=1;MLEAF=0.500;MQ=48.80;MQRankSum=4.208;QD=6.37;ReadPosRankSum=-3.236;SOR=2.343;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr5	848742	.	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.09;MQRankSum=-1.483;QD=2.71;ReadPosRankSum=0.610;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr5	850473	rs72491326	C	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:222,116:0.34:338
chr5	876113	rs115771511	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr5	878427	.	C	G	5179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;ClippingRankSum=0.000;DP=1249;ExcessHet=3.0103;FS=5.266;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-32.898;QD=4.22;ReadPosRankSum=-17.807;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:1055,173:0.14:1228
chr5	878434	rs111758433	C	G	7879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=1478;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-28.922;QD=5.42;ReadPosRankSum=-22.902;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:1101,354:0.24:1455
chr5	878525	rs508016	T	A	21328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.024;ClippingRankSum=0.000;DB;DP=1956;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-24.290;QD=11.05;ReadPosRankSum=7.337;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:840,1091:0.56:1931
chr5	878551	rs145107515	A	G	4207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.255;ClippingRankSum=0.000;DB;DP=1403;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-24.852;QD=3.04;ReadPosRankSum=-2.725;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:1045,339:0.24:1384
chr5	878576	.	C	T	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.393;ClippingRankSum=0.000;DP=800;ExcessHet=3.0103;FS=7.979;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-20.667;QD=2.22;ReadPosRankSum=-6.155;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:617,167:0.21:784
chr5	889657	rs114506188	C	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=1.129;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr5	893742	.	G	A	1447.77	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:157,89:0.36:246
chr5	895111	rs66843001	CA	C	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr5	896983	rs920980	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr5	904395	.	G	GT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.097;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr5	917106	rs58876062	G	C	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:270,158:0.37:428
chr5	1009425	rs10060716	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.777;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr5	1034602	rs144875853	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr5	1035347	rs199569289	TAATG	T	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.470;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr5	1035399	rs147352169	T	TAATG	2559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-2.314;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:172,70:0.29:242
chr5	1035482	rs12657514	A	G	4124.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:429,236:0.35:665
chr5	1036616	rs367843383	CA	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.732;QD=6.54;ReadPosRankSum=1.929;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr5	1036622	.	C	CCCCCA	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=5.997;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.043;QD=20.32;ReadPosRankSum=-1.507;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	1038526	rs3889678	A	G	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	0/1:662,250:0.27:912
chr5	1038587	rs3840988	G	GCCCCCAC	717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=40.820;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=5.801;QD=1.20;ReadPosRankSum=-0.369;SOR=3.270;set=HC	GT:AD:AF:DP	0/1:482,116:0.19:598
chr5	1053341	rs2241602	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:99,53:0.35:152
chr5	1057615	rs2241606	A	G	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=941;set=Intersection	GT:AD:AF:DP	0/1:615,321:0.34:936
chr5	1057782	rs12108965	T	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr5	1060379	rs35661060	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr5	1060400	rs4975568	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr5	1060634	rs4246750	C	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:329,150:0.31:479
chr5	1060654	rs4246749	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:231,123:0.35:354
chr5	1060720	rs111297355	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr5	1063187	rs6863419	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=9.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.991;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr5	1063831	.	G	GC	2264	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=51;MMLQ=24;MQ=58.45;NF=50;NR=9;PP=2264;QD=39.4550128893;SC=ACCTCACGAGGCCACAGCCCT;SbPval=0.8;Source=Platypus;TC=90;TCF=72;TCR=18;TR=59;WE=1063839;WS=1063821;set=Platypus	GT:AD:AF:DP	0/1:31,59:0.66:90
chr5	1064264	rs143746308	G	A	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:540,299:0.36:839
chr5	1065290	rs4362981	A	G	19458.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.267;QD=43.34;ReadPosRankSum=4.707;SOR=0.398;set=HC	GT:AD:AF:DP	1/1:11,438:0.98:449
chr5	1065290	.	AGGACAGCGAGGGGACACT	GGGACAGCGAGGGGACACT,GGGACAGTGAGGGGACAGC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=23;MMLQ=24;MQ=59.85;NF=145,46;NR=84,16;PP=2962,2924;QD=20;SC=GGACAGTGAGAGGACAGCGAG;SbPval=0.6;Source=Platypus;TC=239;TCF=148;TCR=91;TR=229,62;WE=1065327;WS=1065280;set=Platypus	GT:AF:DP	0/1:0.96:239
chr5	1065297	rs62331176	C	T	4088.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.039;QD=10.65;ReadPosRankSum=-2.137;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:261,123:0.32:384
chr5	1065298	rs55643147	GAGGGGACACTGAGGAGACACAC	G	9410.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.738;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=3.526;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.057;QD=24.64;ReadPosRankSum=3.479;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:133,249:0.65:382
chr5	1065306	.	ACT	A	3953.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.073;QD=10.52;ReadPosRankSum=0.284;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:259,117:0.31:376
chr5	1065310	.	A	C	3919.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.094;QD=10.51;ReadPosRankSum=0.928;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:259,114:0.31:373
chr5	1065311	.	GGAGACACAC	G	3829.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.094;QD=10.27;ReadPosRankSum=1.139;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:259,114:0.31:373
chr5	1076519	.	TCAGGTTCCAGC	T	576	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=6;HapScore=1;MGOF=5;MMLQ=27;MQ=60.41;NF=0;NR=38;PP=576;QD=15.8421052632;SC=TCAGGCCCCCTCAGGTTCCAG;SbPval=1.0;Source=Platypus;TC=39;TCF=0;TCR=39;TR=38;WE=1076537;WS=1076509;set=Platypus	GT:AD:AF:DP	1/0:1,38:0.97:39
chr5	1076521	.	A	ATCCTGTGACCACCT	3885.73	.	AC=2;AF=1.00;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	1076524	.	T	TCCA	3067.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	1076526	.	C	CCTGTGACCA,CATCCTGTGACCA	2977.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=64;set=Intersection	GT:AF:DP	1/1:1.00:60
chr5	1078898	rs4975564	A	G	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:305,197:0.39:502
chr5	1081668	rs13176210	G	A	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:355,170:0.32:525
chr5	1081702	rs6865765	A	G	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:557,268:0.32:825
chr5	1093609	rs56276350	G	GGGGCGGGGACT	1945.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:80,50:0.38:130
chr5	1094389	rs4975552	T	A	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:447,241:0.35:688
chr5	1115976	rs28629853	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-1.844;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr5	1115984	rs11275613	T	TGGGAAGGGAGGAGA,TGGGAAGGGAGGAGAGGGAAGGGAGGAGAGGGAAGGGAGGAGA	1998.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=68.92;SOR=0.760;set=HC	GT:AD:AF:DP	1/2:0,20,9:0.69,0.31:29
chr5	1116066	rs6554618	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	1160353	.	CAG	C	615.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr5	1160435	rs141202269	GGA	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.303;QD=0.22;ReadPosRankSum=1.045;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:126,15:0.11:141
chr5	1208820	rs115111255	C	T	6007.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:165,285:0.63:450
chr5	1208964	rs60992377	T	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:88,166:0.65:254
chr5	1214264	rs6554663	A	G	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr5	1216585	rs143326188	G	A	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:39,105:0.73:144
chr5	1216751	rs115133359	C	T	12575.77	.	AC=1;AF=0.500;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	0/1:396,597:0.60:993
chr5	1216775	rs4975629	A	G	23273.77	.	AC=2;AF=1.00;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	1/1:0,894:1.00:894
chr5	1216900	rs35329108	G	A	11764.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:394,558:0.59:952
chr5	1217074	rs76207842	G	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:44,83:0.65:127
chr5	1219611	rs80151745	G	C	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:72,129:0.64:201
chr5	1219874	rs6869718	G	A	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	1221199	rs12513763	T	C	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	1221428	rs139211708	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr5	1225564	rs7728646	T	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.933;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr5	1225613	rs7704058	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:110,75:0.41:185
chr5	1225626	rs7728667	T	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:138,94:0.41:232
chr5	1225687	rs7705355	CT	TC	6026.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;JOINED;set=Intersection	GT:AD:AF:DP	0/1:322,168:0.34:490
chr5	1225703	rs7724858	A	G	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:367,185:0.34:552
chr5	1232445	rs10055742	C	T	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:145,184:0.56:329
chr5	1232491	rs4975623	G	C	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	1235790	rs10042399	A	G	5357.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:137,253:0.65:390
chr5	1240757	rs7447815	C	G	11664.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:327,548:0.63:875
chr5	1240848	rs6554684	A	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	1243009	rs7721679	A	G	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	1244286	rs7448994	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	1244425	rs4073918	C	T	12468.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr5	1254451	rs34742644	T	C	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:404,208:0.34:612
chr5	1255622	rs35083412	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr5	1268464	rs35243220	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:93,36:0.28:129
chr5	1268580	rs33988305	C	T	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	0/1:665,289:0.30:954
chr5	1268847	rs6899038	A	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr5	1271524	rs11133719	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	1280128	rs7734992	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	1280252	rs34471035	G	A	6275.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:134,294:0.69:428
chr5	1320722	rs402710	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr5	1321873	rs10073340	C	T	8738.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:247,417:0.63:664
chr5	1325767	rs466502	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	1325803	rs465498	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	1330253	rs452932	T	C	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	1344458	rs31490	G	A	11287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.888;QD=11.58;ReadPosRankSum=-1.870;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:429,546:0.56:975
chr5	1363946	rs60211446	G	A	14404.77	.	AC=1;AF=0.500;AN=2;DB;DP=1109;set=Intersection	GT:AD:AF:DP	0/1:411,679:0.62:1090
chr5	1394815	rs1042098	A	G	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:167,246:0.60:413
chr5	1400931	rs28363149	A	ATCTACACCAGCCCTG	13023.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.118;QD=13.57;ReadPosRankSum=3.817;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:392,568:0.59:960
chr5	1403073	rs6349	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:80,114:0.59:194
chr5	1403341	rs192765697	C	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr5	1409127	rs429699	T	C	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	1410020	rs8179031	T	C	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,95:0.66:145
chr5	1410979	rs28363098	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr5	1411256	rs2550936	A	C	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	1411412	rs6347	T	C	6040.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:213,297:0.58:510
chr5	1416142	rs40358	C	A	9106.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:287,429:0.60:716
chr5	1442974	rs2254408	C	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:191,87:0.31:278
chr5	1442987	rs2270913	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:224,109:0.33:333
chr5	1443007	rs8179023	G	C	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:276,153:0.36:429
chr5	1464028	rs6876662	C	T	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	1466813	rs2277007	T	C	25714.77	.	AC=2;AF=1.00;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	1/1:0,955:1.00:955
chr5	1466919	rs2277006	G	A	9378.77	.	AC=1;AF=0.500;AN=2;DB;DP=1587;set=Intersection	GT:AD:AF:DP	0/1:1028,546:0.35:1574
chr5	1467004	rs35452723	A	G	6281.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:147,279:0.65:426
chr5	1471109	rs27054	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:113,77:0.41:190
chr5	1479678	rs27059	G	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr5	1481148	rs2447846	A	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:98,70:0.42:168
chr5	1494909	rs3733796	C	T	14198.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:2,559:1.00:561
chr5	1501524	rs28412322	T	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.637;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr5	1501542	rs1979397	C	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	1501790	rs1979396	T	C	6196.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr5	1594664	rs4246747	C	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	1602764	.	G	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=-0.435;QD=4.16;ReadPosRankSum=-0.024;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr5	1632758	rs71597631	C	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr5	1632941	rs112756556	T	G	3834.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:149,194:0.57:343
chr5	1708872	rs62338366	C	T	9366.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:261,428:0.62:689
chr5	1708983	rs12523324	G	A	10999.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	1799172	rs6890404	A	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	1801426	rs13176353	G	C	5477.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:50,133:0.73:183
chr5	1801427	rs34372448	C	CG	5512.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:51,134:0.72:185
chr5	1801432	rs11745573	A	G	5593.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:55,140:0.72:195
chr5	1801689	rs2242412	A	C	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:39,85:0.69:124
chr5	1814369	rs3752844	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr5	1814395	rs36074605	TTGTA	T	3345.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:62,85:0.58:147
chr5	1814783	rs4147773	T	C	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:127,230:0.64:357
chr5	1878440	rs1689717	C	T	15654.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr5	1880891	rs2232376	C	T	9849.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:277,465:0.63:742
chr5	1881828	rs2232375	C	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:41,99:0.71:140
chr5	1882900	rs6876836	C	T	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	3596298	.	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-1.185;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr5	3596518	rs3749631	G	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.901;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:36,45:0.56:81
chr5	3599320	rs861185	A	G	5319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;ClippingRankSum=0.000;DB;DP=891;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=0.393;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:556,321:0.37:877
chr5	3600334	rs844154	T	C	9295.77	.	AC=1;AF=0.500;AN=2;DB;DP=1309;set=Intersection	GT:AD:AF:DP	0/1:773,523:0.40:1296
chr5	3601343	rs113372448	C	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr5	3610658	rs1373997	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	4087292	rs67060329	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:110,58:0.35:168
chr5	4087485	rs6869319	G	T	1909.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.231;QD=25.13;ReadPosRankSum=1.941;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr5	4095621	rs16872786	A	G	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:223,131:0.37:354
chr5	4095647	.	CCTTTT	C	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=7.906;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.787;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:16,23:0.59:39
chr5	4095683	rs11442944	C	CT	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=1.431;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	4403959	rs11952359	C	G	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:152,226:0.60:378
chr5	4404314	rs11383896	G	GT	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	4702311	.	CTGTGTGTGTG	CTGTGTG,C,CTGTGTGTGTGTGTG	370.73	.	AC=1,0,0;AF=0.500,0.00,0.00;AN=2;DP=37;set=Intersection	GT:AF:DP	0/1:0.50:28
chr5	4702352	.	T	TGTGG,TGTGTGG	423.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=44;set=Intersection	GT:AF:DP	0/1:0.42:40
chr5	4702461	rs4315900	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=-1.109;QD=11.53;ReadPosRankSum=2.237;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	4830593	rs816473	T	C	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:187,100:0.35:287
chr5	4930051	rs27416	G	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	4930067	.	A	ATGTG,ATGTGTG	124.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=88;set=Intersection	GT:AF:DP	0/1:0.18:76
chr5	4930086	.	T	TGTGTGA,TGTGTGTGA	1250.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=104;set=Intersection	GT:AF:DP	0/1:0.67:91
chr5	5140970	rs270206	C	T	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,113:0.70:162
chr5	5141009	rs59628659	CT	C	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=0.910;QD=9.91;ReadPosRankSum=-1.097;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr5	5146137	.	A	T	574.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr5	5146200	rs1863969	A	T	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr5	5146214	rs73735709	T	G	5422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.171;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:199,272:0.58:471
chr5	5146223	rs1871468	G	C	19855.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.46;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,560:1.00:560
chr5	5146335	rs2086310	C	G	11517.77	.	AC=1;AF=0.500;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	0/1:350,541:0.61:891
chr5	5146377	rs1019747	T	C	4905.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:366,258:0.41:624
chr5	5146395	rs1863968	A	G	6883.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:208,329:0.61:537
chr5	5186414	.	G	GGTGTGTGTGTGTGT,GGGGGGTGTGTGTGTGT	1711.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.31;QD=24.45;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:3,44,23:0.63,0.33:70
chr5	5189950	rs6859975	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	5192088	rs76258854	A	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr5	5200234	rs1896622	C	G	11800.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr5	5200430	rs16875038	C	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	5223073	rs12652968	A	G	4836.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:99,223:0.69:322
chr5	5232346	rs2913623	G	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	5232356	rs150710468	AGG	A	2986.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	5232398	rs2913624	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	5234983	rs5865597	A	AG	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.282;QD=26.30;ReadPosRankSum=-1.480;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr5	5235001	.	A	G	236	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=18;HapScore=2;MGOF=38;MMLQ=27;MQ=55.94;NF=11;NR=1;PP=236;QD=22.5642677123;SC=AAAAAAAAAAAGAATCCACTT;SbPval=0.75;Source=Platypus;TC=18;TCF=16;TCR=2;TR=12;WE=5235009;WS=5234991;set=Platypus	GT:AD:AF:DP	0/1:6,12:0.67:18
chr5	5235001	.	A	AAAAG	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.89;ReadPosRankSum=-0.611;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	5235028	rs2913630	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr5	5235096	rs2913631	A	G	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:46,100:0.68:146
chr5	5237174	.	G	T	3083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-0.077;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:82,146:0.64:228
chr5	5303349	rs11959893	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr5	5306548	rs57416330	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr5	5318581	rs6885895	A	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	5319998	rs74522150	T	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr5	5436609	rs2578552	G	A	7814.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	5437129	.	T	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.338;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	5437380	rs2578550	C	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	5443179	rs2578554	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	5464237	rs10065646	A	C	19237.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:4,750:0.99:754
chr5	6020374	rs464221	A	G	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	6020418	rs457263	T	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	6020488	rs412953	C	T	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	6312844	.	C	CCA	105	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=27;MQ=59.7;NF=0;NR=5;PP=105;QD=21.6;SC=AGTGTTCTCACCACACACACA;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=5;WE=6312852;WS=6312834;set=Platypus	GT:AD:AF:DP	1/0:14,5:0.26:19
chr5	6312877	.	CACAG	C	136	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=3;MGOF=10;MMLQ=27;MQ=59.69;NF=0;NR=5;PP=136;QD=27.8;SC=CACACACACACACAGAGAGAG;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=5;WE=6312889;WS=6312867;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr5	6337065	rs147195078	T	TACACACACACAC,TACACACACACACACAC	797.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/2:0.50,0.41:22
chr5	6372585	rs9451	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	6377364	rs148114802	T	TG	12569.73	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr5	6378614	rs7723985	G	C	33180.77	.	AC=2;AF=1.00;AN=2;DB;DP=1333;set=Intersection	GT:AD:AF:DP	1/1:3,1304:1.00:1307
chr5	6491532	rs3733778	T	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	6600492	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr5	6602544	rs2303711	T	C	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:206,91:0.31:297
chr5	6602668	rs2303710	G	C	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:295,186:0.39:481
chr5	6604952	rs12522452	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr5	6605532	rs2303707	C	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.519;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:90,44:0.33:134
chr5	6607125	rs3217325	GAAC	G	2034.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:172,62:0.26:234
chr5	6617011	rs6887702	C	A	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:234,180:0.43:414
chr5	6618186	rs10475338	T	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=4.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-2.364;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:120,70:0.37:190
chr5	6623432	rs35232789	G	GA	123.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	6632909	rs571550	G	A	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	6632942	rs193743	G	T	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	6633779	rs248793	C	G	14943.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr5	6645016	rs248805	A	G	12540.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:1,481:1.00:482
chr5	6662945	rs523854	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr5	6663125	rs8192218	A	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.379;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:60,51:0.46:111
chr5	6737571	rs2279657	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr5	6739039	rs573304	T	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	6748518	rs274682	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr5	6748659	rs274681	T	C	12833.77	.	AC=1;AF=0.500;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	0/1:343,613:0.64:956
chr5	6754762	rs274676	T	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,82:0.56:147
chr5	6754779	rs28381434	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:87,123:0.59:210
chr5	6827854	rs275441	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:126,78:0.38:204
chr5	7306615	rs11955700	A	G	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	7690754	rs2914289	C	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr5	7695845	rs11134251	C	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:327,136:0.29:463
chr5	7696028	rs11134252	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr5	7698282	rs60394679	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr5	7698551	rs4257743	C	T	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:69,126:0.65:195
chr5	7707918	rs34899441	C	T	2927.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:320,171:0.35:491
chr5	7712810	rs6555488	C	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	7724578	rs73041796	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr5	7724766	rs12109889	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	7727218	rs6886121	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr5	7757704	.	G	GCCCCAGAGCA	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.631;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	7757705	rs4072341	T	C,TGGCCGTGTTCAACATGGTAAGC	6145.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=256.07;SOR=4.091;set=HC	GT:AD:AF:DP	1/2:0,16,8:0.67,0.33:24
chr5	7757715	rs4479814	C	T	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=2.204;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	7757751	.	C	CGTGTTCAACATGGTAAGCCCCAGAGCATGGCA	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=1.083;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	7802268	rs115865880	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	7802287	rs141627440	AG	A	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr5	7802363	rs2290910	C	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:93,75:0.45:168
chr5	7802414	rs35218680	C	T	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.741;QD=13.67;ReadPosRankSum=-1.143;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:100,186:0.65:286
chr5	7804516	rs75788199	G	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr5	7804577	rs73047092	C	T	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:85,129:0.60:214
chr5	7804812	rs61215232	C	T	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:180,107:0.37:287
chr5	7804814	rs75101052	C	T	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:105,176:0.63:281
chr5	7804833	rs78523758	C	T	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:69,133:0.66:202
chr5	7817258	.	G	GA	607.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.656;QD=14.82;ReadPosRankSum=-1.318;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:5,36:0.88:41
chr5	7826648	rs141881348	AAAC	A	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	7826680	rs6887726	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	7835555	rs6883562	C	G	12481.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr5	7835685	rs179044	G	T	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	7850898	.	TGCCCAGCCGCCCAGCC	T,TGCCCAGCC	1392.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;QD=39.79;SOR=1.002;set=HC	GT:AD:AF:DP	1/2:0,28,7:0.80,0.20:35
chr5	7859523	rs1046012	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	7862926	rs3733784	T	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	7865891	rs16879258	C	A	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	7866967	rs162030	G	C	9629.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	7868030	rs2966952	T	C	14875.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr5	7868313	rs368277879	GAAAA	G	181.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	7869455	rs34828626	TC	T	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	7878179	rs1532268	C	T	13093.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr5	7885782	rs34487083	A	AT	3706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.362;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:50,226:0.82:276
chr5	7893121	rs162049	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	7897319	rs1802059	G	A	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	8461166	rs341899	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	9043142	rs3834271	T	TA	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;QD=21.45;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	9050410	rs257098	C	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	9052171	.	G	A	446.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr5	9053945	rs257095	C	T	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	9066464	rs786847	A	G	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	9066802	rs786846	G	A	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	9122890	rs17238053	C	A	6774.77	.	AC=1;AF=0.500;AN=2;DB;DP=1171;set=Intersection	GT:AD:AF:DP	0/1:760,401:0.35:1161
chr5	9136487	rs6883525	A	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr5	9136646	rs17238609	C	G	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:307,196:0.39:503
chr5	9190404	rs1806095	G	A	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:156,95:0.38:251
chr5	9190598	rs1806132	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr5	9227002	rs6875327	C	T	14588.77	.	AC=1;AF=0.500;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	0/1:402,711:0.64:1113
chr5	9227108	rs146979886	A	AAT	2881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.436;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:177,104:0.37:281
chr5	9280841	rs55821543	G	A	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:326,159:0.33:485
chr5	9280957	rs6555597	C	A	7999.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	9318321	rs6555601	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	9548876	rs115766208	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr5	9629813	rs41469	C	T	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:125,202:0.62:327
chr5	10227548	rs2136197	C	A	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	10227823	rs3080459	C	CCT	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr5	10236720	rs16884350	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:281,145:0.34:426
chr5	10236856	rs11133605	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr5	10236927	rs2292263	C	T	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	10237155	rs6876650	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:103,67:0.39:170
chr5	10239064	rs73741345	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr5	10239278	rs2252505	C	T	4400.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:544,262:0.33:806
chr5	10261542	rs2607327	C	T	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	10263453	rs147103051	GA	G	4026.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=12.494;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=0.489;SOR=1.769;set=HC	GT:AD:AF:DP	1/1:12,140:0.92:152
chr5	10263463	rs370363614	GA	G	933.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=1.277;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:102,52:0.34:154
chr5	10263464	rs9312725	A	G	2120.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,94:0.61:154
chr5	10263582	rs2292267	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	10282396	rs10067744	A	G	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr5	10282479	rs10052785	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr5	10282519	rs10067826	A	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr5	10415850	.	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.178;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr5	10417266	rs78786923	A	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr5	10417589	rs2967956	G	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	10442496	rs2567577	T	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	10448247	rs1976360	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr5	10448505	rs11957839	G	C	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.406;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:101,46:0.31:147
chr5	10505851	rs57083769	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.894;QD=2.02;ReadPosRankSum=0.316;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr5	10509069	rs1392005	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr5	10564846	rs814576	C	T	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	10565027	rs1103749	C	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	10618628	rs60052781	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:181,124:0.41:305
chr5	10624866	rs10062687	T	G	6485.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:170,305:0.64:475
chr5	10624887	rs1531839	T	C	8564.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr5	10638180	rs11745612	T	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:171,74:0.30:245
chr5	10638219	rs142868191	C	A	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:87,201:0.70:288
chr5	10638364	rs6889196	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr5	10650090	rs112072949	C	T	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr5	10650150	rs56969869	A	G	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.061;QD=12.54;ReadPosRankSum=-0.017;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:66,113:0.63:179
chr5	10650251	rs140897444	CGGGGCT	C	2608.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr5	10650324	rs13354827	T	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.087;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr5	10650324	.	TT	GG	448	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=24;MQ=60.0;NF=5;NR=10;PP=448;QD=33.4311916575;SC=ATCGCACCACTTCCGCTCCAT;SbPval=0.43;Source=Platypus;TC=28;TCF=8;TCR=20;TR=15;WE=10650333;WS=10650314;set=Platypus	GT:AD:AF:DP	1/0:13,15:0.54:28
chr5	10650325	rs13354828	T	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.087;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr5	10664999	rs111384023	C	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr5	10748231	rs267944	C	T	10531.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr5	10748462	rs267943	C	T	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	10761182	rs267927	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	10973927	rs1566624	T	C	474.31	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr5	10986791	rs61752660	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:73,104:0.59:177
chr5	10988134	rs61751753	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr5	10992916	rs113404590	A	AGCGCAGAAGAG	4652.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:108,119:0.52:227
chr5	11022845	rs61751665	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr5	11082762	rs2277053	T	C	13555.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr5	11084189	rs1024621	T	C	9504.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr5	11117384	rs2285976	A	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr5	11412302	rs31750	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	11564995	rs7719578	A	G	8583.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:278,416:0.60:694
chr5	13729714	rs3777093	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr5	13735845	rs114814872	G	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr5	13735892	rs3734109	T	C	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	13737700	rs2401811	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	13754394	rs2401809	C	T	7890.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:249,387:0.61:636
chr5	13759172	rs34516765	TA	T	1170.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr5	13762972	rs6554812	T	C	7028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=0.297;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:190,335:0.64:525
chr5	13763039	rs6554813	G	A	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr5	13769356	.	G	GT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.904;QD=8.90;ReadPosRankSum=0.606;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr5	13770757	rs138234449	C	CA	949.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr5	13792403	.	G	A	981.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr5	13810529	rs31238	C	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	13824358	rs116069486	C	G	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:494,244:0.33:738
chr5	13850651	rs795528	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	13850750	rs6554820	A	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	13851016	rs795526	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	13859743	rs1502043	G	T	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.509;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	13859807	rs1867677	G	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	13862600	rs7724453	T	G	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	13862616	rs7704417	C	T	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	13864728	rs6554827	C	A	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	13864885	rs6554828	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	13865717	rs7720415	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	13865980	rs7703349	T	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	13866450	rs11748811	A	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	13867819	rs1445810	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	13867851	rs13156044	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	13868103	rs35398031	TA	T	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr5	13870836	rs35621834	G	A	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	13871925	rs10513159	A	G	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	13876664	rs1445804	T	C	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	13883262	rs10462710	C	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr5	13885023	rs147685082	GCA	G	1414.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.21;ReadPosRankSum=-0.697;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:3,49:0.94:52
chr5	13894894	rs4701997	T	A	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:191,329:0.63:520
chr5	13900345	rs1445823	A	G	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	13901641	rs35090077	A	C	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:119,184:0.61:303
chr5	13902220	rs1530498	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.396;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:118,47:0.28:165
chr5	13911405	rs3765045	G	T	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.842;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:51,78:0.60:129
chr5	13911700	rs34152978	GAA	G	74.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr5	13913885	rs3213936	A	G	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	13914120	rs10513162	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	13914556	rs13179761	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	13914775	rs13180591	G	T	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	13914796	rs13162553	T	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	13914819	rs13180613	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	13916302	rs11750882	C	A	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	13920819	rs10067473	G	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr5	13928085	rs12659700	T	C	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:121,237:0.66:358
chr5	13931205	rs1530497	G	C	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:146,259:0.64:405
chr5	13931340	rs1530496	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr5	13944512	rs339445	A	C	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	14183866	rs354302	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	14183979	rs71597901	CAG	C	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr5	14184022	rs354301	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.199;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:80,32:0.29:112
chr5	14184079	rs354300	G	A	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.697;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:132,59:0.31:191
chr5	14184211	rs354299	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	14184254	rs354298	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.090;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr5	14287298	rs77092330	T	C	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr5	14290805	rs30629	G	A	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:224,109:0.33:333
chr5	14317008	rs354915	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr5	14366840	rs30784	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	14368870	rs148506244	G	A	10431.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:269,485:0.64:754
chr5	14377962	rs30769	A	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	14378068	rs30770	T	G	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	14381119	rs10064105	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr5	14387489	rs30794	G	C	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:110,185:0.63:295
chr5	14388797	rs57751910	G	GT	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=6.779;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.380;QD=2.80;ReadPosRankSum=-0.237;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:129,76:0.37:205
chr5	14389251	rs75997227	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr5	14389545	rs10513177	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr5	14394283	rs256412	G	A	2123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=1.379;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:92,102:0.53:194
chr5	14397016	rs73749236	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	14397238	rs30774	T	C	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:57,145:0.72:202
chr5	14398902	rs34806703	AT	A	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr5	14400998	.	GT	G	561.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr5	14419765	rs59319588	G	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr5	14420027	rs30612	A	C	19205.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr5	14462816	rs27100	C	T	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:69,137:0.67:206
chr5	14472626	rs26186	T	C	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	14479938	rs26173	G	A	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	14481270	rs111593684	TA	T	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.669;QD=10.07;ReadPosRankSum=-0.522;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:44,90:0.67:134
chr5	14481880	.	CTT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=1.742;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	14485161	.	G	GT	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.635;QD=1.93;ReadPosRankSum=1.587;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:141,51:0.27:192
chr5	14509487	rs150510776	T	TTG	2723.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr5	14607339	.	G	GA	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.009;QD=1.67;ReadPosRankSum=-0.505;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr5	14610184	rs25960	C	G	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	14664821	rs250435	G	A	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	14678996	rs31930	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	14741921	rs187483	A	C	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:486,270:0.36:756
chr5	14749551	rs697569	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr5	14749570	rs76025066	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	14751399	rs697570	C	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.36;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	14751400	rs2291943	T	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-1.732;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr5	14758616	rs149656955	G	A	8939.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:343,444:0.56:787
chr5	14758825	rs114851793	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr5	15500889	rs512861	A	G	5073.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:133,231:0.63:364
chr5	15927905	rs70938037	A	AAGAC	3081.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=42.80;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:1,71:0.99:72
chr5	15927927	rs66504704	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:142,88:0.38:230
chr5	15928225	rs375726815	G	A	14239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=1220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=2.598;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:469,671:0.59:1140
chr5	16067431	rs6554909	A	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr5	16091242	rs11389357	G	GA	454.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	16458494	rs58029623	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=1.753;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	16463525	rs73753046	T	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	16474778	rs11428210	C	CT	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.717;QD=1.20;ReadPosRankSum=2.130;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:154,46:0.23:200
chr5	16475199	rs61733811	C	G	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:382,179:0.32:561
chr5	16475209	rs34432513	G	C	7640.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:197,387:0.66:584
chr5	16477751	rs162850	C	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	16478083	rs80022438	G	A	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-1.306;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr5	16478200	rs162848	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr5	16479220	rs33692	A	G	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=23.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	16481062	rs2305279	C	T	11874.77	.	AC=1;AF=0.500;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	0/1:312,558:0.64:870
chr5	16481185	rs16868675	A	G	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:434,243:0.36:677
chr5	16565892	rs61741225	C	T	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:144,211:0.59:355
chr5	16572322	.	C	CTTT	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.095;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr5	16617099	rs35003	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.16;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	16617099	.	ACAGGGACG	GCAGGGACC,GCAGGGACG	331	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=25;MQ=60.0;NF=1,7;NR=8,26;PP=58,331;QD=12.3853194291;SC=GTGCTTCCAGACAGGGACGGG;SbPval=0.86;Source=Platypus;TC=34;TCF=7;TCR=27;TR=9,33;WE=16617115;WS=16617089;set=Platypus	GT:AF:DP	0/1:0.26:34
chr5	16617107	.	G	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=8.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.382;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr5	16667003	rs26743	C	T	12236.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr5	16667065	rs33273	C	G	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	16668256	rs35579	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	16673800	rs3188408	G	A	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	16673975	rs25901	C	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	16679966	rs35580	C	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	16681966	rs399833	G	A	11155.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr5	16682062	rs16868979	C	T	13647.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr5	16690079	rs256936	A	T	12959.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr5	16711365	rs3214558	CA	C	7352.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:12,359:0.97:371
chr5	16711451	rs27552	G	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr5	16754991	rs61736777	C	T	9204.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	16755022	rs113171451	T	TAGAA	8927.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	16762646	rs31511	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:179,123:0.41:302
chr5	16764255	rs375881422	CA	C	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.759;QD=3.37;ReadPosRankSum=2.092;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:76,36:0.32:112
chr5	16764334	rs250341	C	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:290,128:0.31:418
chr5	16766093	rs2561232	C	T	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	16783437	rs71595983	T	TAAAC	11870.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=46.01;SOR=1.317;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	16795027	rs35681033	CA	C	4842.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:82,146:0.64:228
chr5	16818363	rs12188582	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr5	16916071	rs145081788	GAA	G,GA	1847.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.638;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.139;QD=19.25;ReadPosRankSum=1.504;SOR=0.316;set=HC	GT:AD:AF:DP	1/2:6,66,24:0.69,0.25:96
chr5	17276053	.	CCTCT	C,CCT	1943.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;QD=36.00;SOR=2.480;set=HC	GT:AD:AF:DP	1/2:0,33,21:0.61,0.39:54
chr5	19520932	rs441865	T	C	6861.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:214,324:0.60:538
chr5	19721490	rs12187552	T	C	16775.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:1,679:1.00:680
chr5	20305128	.	G	A	1700.77	.	AC=1;AF=0.500;AN=2;DP=288;set=Intersection	GT:AD:AF:DP	0/1:183,97:0.35:280
chr5	21461786	rs4701564	T	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr5	21751717	.	G	GAA	778.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr5	21751718	rs11270041	A	AAAGAGT	188.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:41,11:0.21:52
chr5	21751719	rs74965569	G	A	38.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=12.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.722;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr5	21751720	rs55879862	T	A	1128.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr5	21751722	rs77099217	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=11.557;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.428;QD=0.61;ReadPosRankSum=-0.536;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:50,7:0.12:57
chr5	21751760	.	T	TGTGTGTGTGTGA	1179.73	.	AC=1;AF=0.500;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr5	21752050	rs6451992	A	G	10801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.28;ReadPosRankSum=1.143;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:187,277:0.60:464
chr5	21752056	rs6451993	A	G	10901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.24;ReadPosRankSum=0.311;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:190,279:0.59:469
chr5	21760602	rs2303748	C	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr5	21760731	rs2303749	T	C	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:388,241:0.38:629
chr5	21802662	rs6897177	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	21842436	rs17839323	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:134,66:0.33:200
chr5	23510203	rs2973615	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr5	23523348	rs1874165	C	T	5505.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:136,262:0.66:398
chr5	23527919	rs2099081	A	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	23975952	rs10037197	G	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.586;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr5	23976115	rs1501940	G	A	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:265,161:0.38:426
chr5	24498690	rs3815909	T	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr5	24511654	rs200515135	CAGAGAGAGAGAGAG	C,CAGAG	1849.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=5.195;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.457;QD=35.57;ReadPosRankSum=1.617;SOR=3.312;set=HC	GT:AD:AF:DP	1/2:4,25,23:0.48,0.44:52
chr5	24537481	rs6882202	G	T	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:201,120:0.37:321
chr5	24593325	rs16893586	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr5	25190672	rs55966917	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr5	26881236	rs182264787	A	G	10075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=3.379;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:355,479:0.57:834
chr5	26881825	rs140692479	T	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr5	26889902	rs13190383	A	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr5	26902897	rs116506776	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	26905920	rs5866810	GT	G	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	26988328	rs2288466	G	A	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:116,207:0.64:323
chr5	26988424	rs2288467	T	C	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr5	31305265	rs2287581	C	T	3341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.583;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:107,160:0.60:267
chr5	31322851	rs2962790	A	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	31401447	rs10719	A	G	6320.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:207,309:0.60:516
chr5	31405874	rs67380927	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.709;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	31407139	rs507816	G	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr5	31409115	rs644236	T	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr5	31409252	rs2241337	A	G	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-3.871;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:297,138:0.32:435
chr5	31423007	rs2287584	T	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:176,100:0.36:276
chr5	31435887	rs10039385	A	G	4555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=2.693;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:451,265:0.37:716
chr5	31435975	.	C	CA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.942;QD=0.75;ReadPosRankSum=0.712;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr5	31449241	rs371567874	CA	C	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.583;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:32,42:0.57:74
chr5	31472117	rs3763075	G	C	10662.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	31483596	rs10052174	G	A	11959.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr5	31483753	rs11341915	GA	G	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=8.811;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.610;QD=9.35;ReadPosRankSum=-1.642;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:22,72:0.77:94
chr5	31485230	rs7712436	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	31486540	rs7735863	A	G	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:506,264:0.34:770
chr5	31508933	rs56327412	G	GT	1976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=1.727;QD=14.02;ReadPosRankSum=-0.640;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:25,116:0.82:141
chr5	31511004	rs28528378	A	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr5	31515221	rs7729936	C	T	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:85,193:0.69:278
chr5	31515373	rs7730136	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr5	31529299	rs6859527	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	31529306	rs6450850	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	31532429	rs2291109	A	T	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	31532638	rs6877842	G	C	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	31534552	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.307;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:223,44:0.16:267
chr5	31538249	rs10071110	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr5	31541212	rs59397192	A	AGT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.008;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	31552895	rs16901277	T	A	2963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.520;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:379,181:0.32:560
chr5	32037569	rs923834	A	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr5	32048546	rs80106010	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,26:0.29:90
chr5	32054092	rs149414	C	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	32057651	rs161545	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	32057910	.	G	GTT	3615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=2.627;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:132,204:0.61:336
chr5	32058115	rs151861	A	G	10270.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:329,487:0.60:816
chr5	32059282	rs73753914	C	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr5	32060985	rs35665699	T	TATC	3021.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	32069910	rs6862076	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr5	32071436	rs76666845	T	C	7496.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:253,362:0.59:615
chr5	32072213	rs3797064	A	C	8152.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:224,372:0.62:596
chr5	32074392	rs2291114	G	A	10786.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:282,495:0.64:777
chr5	32090100	rs283121	A	G	12296.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:297,558:0.65:855
chr5	32090757	rs61743513	C	T	5552.77	.	AC=1;AF=0.500;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	0/1:600,328:0.35:928
chr5	32101168	rs2279232	A	T	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:339,154:0.31:493
chr5	32101442	rs283108	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr5	32135599	rs161539	G	A	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	32209751	.	T	TTA	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-2.147;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr5	32242381	rs7729256	G	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	32379210	rs1862636	G	A	11523.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr5	32379336	.	C	A	6360.77	.	AC=1;AF=0.500;AN=2;DP=465;set=Intersection	GT:AD:AF:DP	0/1:156,304:0.66:460
chr5	32385865	rs7718350	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr5	32385870	rs7718355	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr5	32388471	rs889318	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr5	32388485	rs3811972	G	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr5	32400027	rs115599207	A	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.000;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:80,39:0.33:119
chr5	32400266	rs1051489	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:194,109:0.36:303
chr5	32403346	rs4867440	C	T	22465.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:0,872:1.00:872
chr5	32415360	rs5867145	TA	T	1527.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	32417694	rs178935	G	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	32419805	rs7445799	T	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr5	32444199	rs2922295	C	G	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.291;QD=10.93;ReadPosRankSum=0.389;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr5	32444286	rs183443	A	G	2768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.201;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:80,133:0.62:213
chr5	32523114	rs681162	T	A	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.281;QD=4.89;ReadPosRankSum=1.286;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:253,106:0.30:359
chr5	32523181	rs16874392	A	G	7882.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:189,376:0.67:565
chr5	32523343	rs2457151	C	T	9826.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr5	32591804	.	AT	A	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.323;QD=2.45;ReadPosRankSum=-1.423;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:100,61:0.38:161
chr5	32594752	rs12653236	C	T	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	32688982	rs72740623	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr5	32689008	rs1458050	C	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr5	32710965	rs10611482	GTT	G,GT	2159.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=27.046;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.765;QD=13.93;ReadPosRankSum=2.457;SOR=3.178;set=HC	GT:AD:AF:DP	1/2:22,84,49:0.54,0.32:155
chr5	32711000	rs34939454	A	ATG,ATGTG	1688.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	1/2:0.66,0.29:56
chr5	32716474	rs34628434	C	CT,CTT	2062.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.780;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=2.530;SOR=0.814;set=HC	GT:AD:AF:DP	1/2:28,84,40:0.55,0.26:152
chr5	32716552	rs111785854	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:205,81:0.28:286
chr5	32725072	rs1147224	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	32775047	rs1173743	G	T	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:38,85:0.69:123
chr5	32786465	.	C	CT	3930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DP=760;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.142;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:386,314:0.45:700
chr5	32789852	rs1173756	T	C	11156.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:333,537:0.62:870
chr5	33441124	rs2304621	C	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	33445519	rs138364501	TATC	T	2879.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:234,87:0.27:321
chr5	33448962	rs5867190	A	AT	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	33453369	rs111754118	T	C	2176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-1.021;QD=11.70;ReadPosRankSum=0.575;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:65,121:0.65:186
chr5	33455235	rs112825149	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	33457535	rs2270903	T	A	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	33457618	rs1003000	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	33458636	rs3765145	G	A	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	33462034	rs3736393	G	A	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:189,267:0.59:456
chr5	33466931	rs76365125	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:142,68:0.32:210
chr5	33467929	rs7261	T	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr5	33527307	rs16891281	A	G	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	33527538	rs7729534	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	33535060	rs25754	G	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:97,74:0.43:171
chr5	33546113	.	TAA	T,TA	770.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.486;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;MQRankSum=0.662;QD=16.40;ReadPosRankSum=2.024;SOR=2.049;set=HC	GT:AD:AF:DP	1/2:4,30,13:0.64,0.28:47
chr5	33546432	rs29967	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.473;QD=4.89;ReadPosRankSum=1.125;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr5	33561028	.	GAA	G,GA	1387.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.704;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=-0.396;QD=14.61;ReadPosRankSum=-1.833;SOR=1.263;set=HC	GT:AD:AF:DP	1/2:14,50,31:0.53,0.33:95
chr5	33588684	rs56237226	C	T	7374.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:260,347:0.57:607
chr5	33595996	rs10461924	C	T	6817.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:193,325:0.63:518
chr5	33596193	rs10461925	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr5	33596224	rs10461703	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr5	33596243	rs10461704	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	33614284	rs75853185	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.276;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr5	33614292	rs79306594	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=1.190;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr5	33614467	rs61748197	C	A	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:217,116:0.35:333
chr5	33615904	rs10057235	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	33616311	rs4078398	T	C	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	33624496	rs34333679	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr5	33630839	rs4260678	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:133,78:0.37:211
chr5	33631142	rs7444287	C	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	33637596	rs4076945	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr5	33637891	rs4076946	C	A	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.570;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:67,36:0.35:103
chr5	33637899	rs4076947	G	A	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=1.223;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr5	33643395	rs10066043	A	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr5	33643617	rs4866409	C	T	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=2.277;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:380,130:0.25:510
chr5	33648842	rs34079160	GTT	G	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	33648906	rs6870538	G	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr5	33649220	rs4866353	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr5	33649637	rs4242082	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:101,54:0.35:155
chr5	33649807	rs4504387	C	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.571;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:234,96:0.29:330
chr5	33649905	rs4621563	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.533;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr5	33683931	rs11952203	T	C	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-2.029;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr5	33751389	rs5867210	T	TA	869.75	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:7,48:0.87:55
chr5	33751454	rs1530507	A	T	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	33881385	rs16891862	G	C	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:407,205:0.33:612
chr5	33881669	.	C	CATT	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.368;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr5	33892057	.	G	T	38	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=25;MQ=60.0;NF=0;NR=4;PP=38;QD=18.1928031368;SC=AGATGCAGGGGTGCATGGTCA;SbPval=1.0;Source=Platypus;TC=20;TCF=6;TCR=14;TR=4;WE=33892065;WS=33892047;set=Platypus	GT:AD:AF:DP	0/1:16,4:0.20:20
chr5	33947544	rs250416	C	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.764;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:57,22:0.28:79
chr5	33951826	rs35398	G	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr5	33954511	rs2287949	T	C	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:225,114:0.34:339
chr5	33963731	rs141348470	AAAC	A	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr5	33964241	rs6451048	A	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	33969149	.	A	ACTCTCTCTCTCT	2994	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=22;MQ=58.73;NF=3;NR=28;PP=2994;QD=20;SC=AGTACCAGCTACTCTCTCTCT;SbPval=0.24;Source=Platypus;TC=55;TCF=3;TCR=52;TR=31;WE=33969157;WS=33969139;set=Platypus	GT:AD:AF:DP	1/0:24,31:0.56:55
chr5	33969170	rs199542822	C	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.606;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr5	33984181	rs16892061	A	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr5	33988445	rs140021599	A	C	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:111,173:0.61:284
chr5	33989518	rs2278008	C	T	20694.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:1,792:1.00:793
chr5	33994116	rs10472909	A	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr5	33994316	rs11742345	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr5	33998883	rs2287939	A	G	15827.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr5	34007858	rs9282595	C	T	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:117,174:0.60:291
chr5	34042866	rs112167551	A	AAAC	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.647;QD=20.61;ReadPosRankSum=0.619;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr5	34687817	rs10521016	T	C	6952.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:213,344:0.62:557
chr5	34687911	rs2279604	G	A	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	34757446	rs113759249	A	G	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:119,200:0.63:319
chr5	34803675	rs66603667	AC	A	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	34814660	rs12332660	A	G	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:83,182:0.69:265
chr5	34818976	rs5867249	G	GT	1223.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,85:0.60:141
chr5	34822926	rs7730728	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr5	34829920	rs367874264	G	T	6460.77	.	AC=1;AF=0.500;AN=2;DB;DP=1056;set=Intersection	GT:AD:AF:DP	0/1:672,378:0.36:1050
chr5	34840841	rs6451173	A	G	20614.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,797:1.00:797
chr5	34845473	rs336486	C	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	34880750	.	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.021;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:100,47:0.32:147
chr5	35010138	rs466067	A	G	22003.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:2,863:1.00:865
chr5	35025770	rs344515	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr5	35026683	rs344513	A	G	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	35026699	rs61293163	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.552;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr5	35032769	rs237252	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	35033605	rs180749	G	A	9198.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	35035579	rs344156	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	35036997	rs37368	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:80,113:0.59:193
chr5	35037006	rs171081	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:124,87:0.41:211
chr5	35037115	rs37369	C	T	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	35037139	rs16870794	C	G	1214.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:96,67:0.41:163
chr5	35039437	rs2279651	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:119,59:0.33:178
chr5	35039486	rs37370	C	T	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	35047807	rs10223180	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	35047845	rs40201	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr5	35628681	rs115972737	C	G	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:78,177:0.69:255
chr5	35641582	rs6897513	A	C	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:151,208:0.58:359
chr5	35641668	rs78762910	A	G	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:113,137:0.55:250
chr5	35644621	rs7706444	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr5	35654711	rs2270558	C	T	5824.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:243,283:0.54:526
chr5	35659355	rs9292598	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:41,56:0.58:97
chr5	35692775	rs7710284	T	A	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:123,173:0.58:296
chr5	35694487	rs75251573	TC	T	6646.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:107,192:0.64:299
chr5	35695915	rs62351876	A	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr5	35697667	rs113971395	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr5	35700598	rs6451206	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:214,115:0.35:329
chr5	35702212	.	GA	G	258	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=3;MGOF=21;MMLQ=27;MQ=60.26;NF=6;NR=0;PP=258;QD=48.5;SC=GCCAAGGGAGGACAAATCTTC;SbPval=1.0;Source=Platypus;TC=27;TCF=23;TCR=4;TR=6;WE=35702220;WS=35702192;set=Platypus	GT:AD:AF:DP	1/0:21,6:0.22:27
chr5	35702306	rs6874120	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,78:0.34:230
chr5	35704584	rs7448971	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.854;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr5	35704892	rs10058349	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.196;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr5	35709095	rs13170082	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:255,133:0.34:388
chr5	35709184	rs13170390	G	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:293,113:0.28:406
chr5	35712780	rs10078803	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr5	35713007	rs10073537	T	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,58:0.39:148
chr5	35727738	rs112987691	A	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr5	35739960	rs10043875	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	35753715	rs11957963	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr5	35753924	rs62353693	T	C	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:341,202:0.37:543
chr5	35763877	rs11298650	AG	A	1163.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr5	35763895	rs6876874	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	35763916	rs6895801	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	35764587	rs4869466	G	A	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	35764603	rs4869467	A	G	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	35764696	rs4242258	C	T	15504.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr5	35764835	rs56053392	T	G	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:108,218:0.67:326
chr5	35771991	rs6861184	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr5	35779447	rs2277044	A	C	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:157,252:0.62:409
chr5	35788661	rs56349002	T	C	5475.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:137,261:0.66:398
chr5	35789164	rs1494576	G	A	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:163,282:0.63:445
chr5	35789760	rs2277042	C	T	5850.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:187,268:0.59:455
chr5	35790252	rs6875303	A	G	4712.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:116,228:0.66:344
chr5	35790286	rs6860528	T	C	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:63,148:0.70:211
chr5	35792356	rs7730148	A	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.668;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr5	35795738	rs716971	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	35799994	rs3822735	A	G	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr5	35807070	rs36093359	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr5	35807374	rs112963828	T	C	8353.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:206,400:0.66:606
chr5	35807455	rs7736291	T	G	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	35857177	rs1353252	G	C	9096.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.52;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr5	35857235	rs1494561	C	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	35857262	rs1353250	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr5	35857308	rs5867289	T	TC	2170.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;MQ=60.38;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	35861068	rs1494558	T	C	16043.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr5	35861159	rs969128	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr5	35871190	rs1494555	G	A	11276.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr5	35871273	rs2228141	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:108,61:0.36:169
chr5	35875593	rs987106	A	T	8156.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:223,392:0.64:615
chr5	35876274	rs3194051	A	G	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:108,183:0.63:291
chr5	35904614	rs1833907	G	T	5698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.78;ReadPosRankSum=1.138;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:87,143:0.62:230
chr5	35904618	rs113453568	T	C	5670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=0.756;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:82,141:0.63:223
chr5	35921069	rs6859892	T	C	15902.77	.	AC=1;AF=0.500;AN=2;DB;DP=1228;set=Intersection	GT:AD:AF:DP	0/1:453,760:0.63:1213
chr5	35921266	rs3734107	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr5	35955682	rs768622	C	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr5	35956026	rs768621	T	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr5	35957283	rs76149241	T	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr5	35962984	rs1070895	A	G	5549.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:171,270:0.61:441
chr5	35968000	rs10491431	C	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr5	36037778	rs2247611	G	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	36265476	.	CACACATAT	C	7095.73	.	AC=1;AF=0.500;AN=2;DP=708;set=Intersection	GT:AD:AF:DP	0/1:315,367:0.54:682
chr5	36268364	rs61734063	T	G	11090.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr5	36301369	rs884692	T	G	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	36301374	rs884693	T	C	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	36301420	rs884694	G	T	8509.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	36608727	rs3216728	C	CA	1836.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:223,120:0.35:343
chr5	36613053	rs7728680	A	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr5	36629529	rs78316512	CT	C	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.556;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:93,56:0.38:149
chr5	36680125	rs2303716	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	36683809	rs11284736	CA	C	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.222;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:10,36:0.78:46
chr5	36683888	rs11748249	G	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:35,98:0.74:133
chr5	36958085	rs141750225	CAA	C	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.418;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.971;QD=10.71;ReadPosRankSum=-1.679;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	36985303	rs3822471	A	G	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.196;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:220,100:0.31:320
chr5	37001074	rs78827246	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.591;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr5	37007629	rs159753	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	37010448	rs62654863	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr5	37019354	rs300060	G	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	37036449	.	GTATA	G	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-0.431;QD=44.12;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	37061261	rs188541	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	37115000	rs11286555	CA	C	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.791;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:16,53:0.77:69
chr5	37139291	rs301870	T	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	37139474	rs34646696	TA	T	1862.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.306;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.241;QD=19.61;ReadPosRankSum=-0.096;SOR=0.682;set=HC	GT:AD:AF:DP	1/1:3,92:0.97:95
chr5	37170277	rs139528477	T	C	6814.77	.	AC=1;AF=0.500;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	0/1:612,381:0.38:993
chr5	37173930	rs10076911	A	C	18315.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr5	37175888	rs148926730	T	TTTA	438.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	37176091	rs10805625	A	G	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	37179372	rs10042218	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	37180362	.	G	GT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.506;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr5	37184911	rs138157520	C	T	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.733;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:177,67:0.27:244
chr5	37185189	rs111508546	GAA	G	13556.73	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:218,350:0.62:568
chr5	37187489	rs78164677	G	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	37205651	rs6878453	C	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr5	37224485	rs77589724	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr5	37239710	rs150622775	G	GA	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr5	37244445	rs10072236	C	T	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:62,120:0.66:182
chr5	37244793	rs61406200	T	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=0.644;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr5	37247700	rs6876576	G	A	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	37292239	rs216392	G	A	8506.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr5	37293215	rs2272602	A	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr5	37307299	.	C	CAA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.772;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr5	37307389	rs74646699	T	C	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:209,125:0.37:334
chr5	37318295	rs217797	G	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	37325940	rs79019688	T	C	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=1.018;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr5	37330339	rs16903584	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr5	37332037	rs76290783	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr5	37333727	rs150594	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	37341144	rs142180240	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr5	37350152	rs140847019	TTAACA	T	1315.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr5	37350390	rs217776	C	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	37352725	rs191308854	T	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.750;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr5	37352829	rs77520181	G	A	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:85,197:0.70:282
chr5	37352984	rs137959494	AGAGT	A	5268.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:108,138:0.56:246
chr5	37364443	rs217852	C	T	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr5	37392279	.	GTT	G	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.826;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr5	37479853	rs76523401	T	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.172;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr5	37516814	rs1967541	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=-2.515;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr5	37516826	rs67967864	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.41;ReadPosRankSum=-1.094;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr5	37687843	rs35188065	AT	A	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.555;QD=2.12;ReadPosRankSum=0.604;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:68,29:0.30:97
chr5	37724990	rs7444391	G	A	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	37752497	rs2973079	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.383;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr5	38305547	rs2451018	G	A	13793.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,544:1.00:544
chr5	38370537	rs1465567	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:131,90:0.41:221
chr5	38406477	rs4346793	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr5	38407273	rs111320305	A	AT	881.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr5	38407888	rs2961882	T	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr5	38408093	rs60540056	C	G	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:106,165:0.61:271
chr5	38412674	rs16903965	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:234,148:0.39:382
chr5	38418035	rs56070719	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=2.389;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr5	38425008	rs3812046	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr5	38425110	rs6897179	C	A	5475.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:185,263:0.59:448
chr5	38425317	rs2961894	C	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr5	38435130	rs2956598	T	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	38438371	rs2731975	C	G	13384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=1.443;SOR=0.372;set=HC	GT:AD:AF:DP	1/1:1,511:1.00:512
chr5	38490467	rs113874922	A	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=-0.789;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	38493782	rs3729744	G	A	10637.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:302,510:0.63:812
chr5	38493905	rs3729743	G	A	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr5	38510481	rs34968906	AC	A	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:58,18:0.24:76
chr5	38528951	rs10637374	G	GAC	1178.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr5	38530485	rs11293177	CA	C	369.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	38557788	rs73749278	T	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:155,79:0.34:234
chr5	38820695	rs446650	G	A	3192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.034;QD=13.59;ReadPosRankSum=-0.822;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:81,154:0.66:235
chr5	38820802	rs542867	A	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr5	38820823	rs113106049	C	CAT	1251.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr5	38820839	rs640966	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr5	38822040	rs413278	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr5	38823254	rs369886	C	T	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:53,98:0.65:151
chr5	38823318	rs142353288	G	GTGCA	8220.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:76,197:0.72:273
chr5	38823358	rs581668	C	A	6055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.023;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=9.276;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=2.710;QD=16.19;ReadPosRankSum=6.945;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:202,172:0.46:374
chr5	38823462	rs12651783	A	G	3472.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:405,220:0.35:625
chr5	38876573	rs357271	T	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	38881628	rs525735	G	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,10:0.20:51
chr5	38903923	rs11949864	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr5	38904363	rs1239334	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr5	38917574	rs357260	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr5	38917904	rs357262	G	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38919158	rs10941412	G	A	4957.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:415,260:0.39:675
chr5	38923171	rs357293	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	38931919	rs357277	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.416;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	38942549	rs77756526	A	G	3039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.330;QD=13.94;ReadPosRankSum=0.790;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:78,140:0.64:218
chr5	38942554	rs201700638	AT	A	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=5.956;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.785;QD=0.76;ReadPosRankSum=-0.138;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr5	38950776	rs2115949	G	A	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	38953427	rs2115948	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	38953447	rs2115947	T	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38953665	rs33912683	G	GA	630.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.571;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr5	38954825	rs35716624	G	GT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.046;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr5	38954994	rs9292726	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	38958968	rs6868591	A	C	1159.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.16;ReadPosRankSum=0.910;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr5	38959794	rs2115946	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	38962543	rs7729745	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	38966903	rs11435048	A	AT	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.697;QD=7.78;ReadPosRankSum=0.762;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr5	38971912	rs7732615	T	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	39021369	rs13177690	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	39107353	rs404122	T	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	39108309	rs377022	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr5	39108322	rs430630	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	39119788	rs7723939	G	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	39124420	rs116497156	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:72,94:0.57:166
chr5	39124508	rs2303807	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	39134295	rs4957318	C	T	10641.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr5	39137953	rs7725991	G	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:159,106:0.40:265
chr5	39141088	rs10214021	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr5	39202911	rs1642515	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:129,84:0.39:213
chr5	39270686	rs696753	G	T	2816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.665;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:365,172:0.32:537
chr5	39288811	rs700180	T	C	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:255,135:0.35:390
chr5	39316123	rs139000312	G	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr5	39342119	rs16868726	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr5	39342308	rs476569	C	T	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	39364339	rs700231	T	C	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:22,71:0.76:93
chr5	39364358	rs700232	G	A	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:40,104:0.72:144
chr5	39364474	rs6864541	A	G	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:441,217:0.33:658
chr5	39364554	rs700233	G	A	4726.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:113,217:0.66:330
chr5	39375082	rs2686162	C	T	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.105;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:135,63:0.32:198
chr5	39390061	rs2855512	C	A	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	40716153	rs10737963	C	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr5	40728383	rs70988805	C	CAAAAAAAAAAAA	1981.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;QD=48.33;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	40769063	rs370926280	T	C	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.457;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:45,71:0.61:116
chr5	40772071	rs837103	C	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	40835415	.	C	T	2344.77	.	AC=1;AF=0.500;AN=2;DP=442;set=Intersection	GT:AD:AF:DP	0/1:298,131:0.31:429
chr5	40835527	.	C	G	232.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr5	40843245	rs113193657	T	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr5	40852451	rs188934	C	G	13789.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr5	40854682	rs1697938	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	40909694	rs115456770	C	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:178,85:0.32:263
chr5	40928574	rs2443040	A	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	40928792	rs2459467	T	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	40931357	rs2271709	A	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr5	40949997	rs1450656	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr5	40954845	rs13360351	G	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=0.994;QD=3.29;ReadPosRankSum=-1.087;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr5	40954854	rs7726621	C	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-1.050;QD=23.84;ReadPosRankSum=2.412;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr5	40954879	rs7726498	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-1.230;QD=23.09;ReadPosRankSum=0.705;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr5	40964816	rs7713884	C	A	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	40972017	rs11747673	A	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	40972111	rs10805655	C	T	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr5	40980102	rs2292727	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	40981375	rs3749519	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	40981391	rs59346505	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	40981398	rs41271065	C	T	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.58;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	40998196	rs704040	T	C	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:198,136:0.41:334
chr5	40998760	rs61745464	C	T	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:329,147:0.31:476
chr5	40998851	rs2329435	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,67:0.76:88
chr5	40999637	.	C	T	421.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr5	40999900	rs1376175	T	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr5	41000343	rs1001420	G	A	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-1.569;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:155,79:0.34:234
chr5	41000945	rs73088394	C	T	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:246,129:0.34:375
chr5	41001023	rs2167229	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr5	41004396	rs7712140	G	T	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.95;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	41004396	.	GTTTCTGTTCA	TTTTCTGTTCA,TTTTCTGTTCT	827	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=45,12;NR=18,5;PP=827,255;QD=13.6789081357;SC=ACCTAAACCTGTTTCTGTTCA;SbPval=0.52;Source=Platypus;TC=63;TCF=45;TCR=18;TR=63,17;WE=41004414;WS=41004386;set=Platypus	GT:AF:DP	0/1:1.00:63
chr5	41004406	rs7711722	A	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.568;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:90,50:0.36:140
chr5	41004807	rs2305314	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr5	41005516	.	C	G	38	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=11;HapScore=2;MGOF=68;MMLQ=27;MQ=58.88;NF=2;NR=0;PP=38;QD=36.3856062736;SC=CTCTATGAAACCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=2;WE=41005524;WS=41005506;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr5	41005791	rs10941529	T	C	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:183,105:0.36:288
chr5	41008780	rs2271704	A	G	14005.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr5	41009899	rs1878290	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr5	41018452	rs10054110	A	T	5237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.455;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:157,254:0.62:411
chr5	41032998	rs325831	A	G	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr5	41033112	rs4957367	G	A	7281.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:190,339:0.64:529
chr5	41033909	rs143823987	ATCTATCTATCTATC	A	2792.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr5	41033931	.	C	CTATT	2727.73	.	AC=1;AF=0.500;AN=2;DP=228;set=Intersection	GT:AD:AF:DP	0/1:108,111:0.51:219
chr5	41034181	rs325833	A	G	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	41039000	rs325849	A	G	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.24;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	41039430	rs7700901	G	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	41042284	rs325854	G	T	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	41045730	rs11297360	CT	C	1160.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,74:0.68:109
chr5	41045768	rs325860	G	A	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	41047770	rs115347076	T	A	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:52,107:0.67:159
chr5	41049169	rs79591239	T	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr5	41049389	rs325863	T	C	15889.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	41049397	rs325864	C	T	15830.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr5	41050999	rs325866	C	T	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	41052735	rs9764586	G	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr5	41054934	rs325874	A	G	6315.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:159,303:0.66:462
chr5	41057562	rs618334	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr5	41061716	rs865093	A	G	8986.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr5	41149235	rs1014587	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr5	41149738	.	A	C	89.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	41149910	rs4422567	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	41154150	rs4957374	A	C	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	41158671	rs10075985	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	41158752	rs201407981	A	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-3.282;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:310,125:0.29:435
chr5	41158863	rs6866352	G	A	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr5	41160311	rs2287901	A	G	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:328,174:0.35:502
chr5	41199959	rs1801033	G	T	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:142,212:0.60:354
chr5	41313654	rs73075970	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr5	41382536	rs16871312	C	T	16236.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:2,611:1.00:613
chr5	41382586	.	G	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.550;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:586,82:0.12:668
chr5	41382691	rs545358	C	A	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	41475766	rs318039	C	T	4877.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:537,287:0.35:824
chr5	41739684	rs33967331	G	A	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	41803415	rs34569700	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	41805575	rs16871955	G	C	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	41840589	rs138363255	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:208,99:0.32:307
chr5	41842746	rs13164201	T	C	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr5	41843797	rs4957430	C	T	17363.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr5	41870331	rs7728678	G	T	8933.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:198,416:0.68:614
chr5	41915310	rs58204687	G	A	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:119,148:0.55:267
chr5	41927423	rs277414	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	42565843	rs12521020	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr5	42566166	rs10941579	A	T	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-1.637;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr5	42646260	rs11415813	C	CT	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr5	42646448	rs79362852	T	A	6785.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:213,329:0.61:542
chr5	42647676	.	CA	C	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.656;QD=6.07;ReadPosRankSum=1.149;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:50,65:0.57:115
chr5	42700044	rs6179	A	G	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:246,148:0.38:394
chr5	42713753	rs6880730	T	A	35.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.95;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	42718335	rs76362844	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr5	42719239	rs6180	A	C	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:364,171:0.32:535
chr5	42769844	rs1109882	G	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.144;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr5	42779686	rs11427149	G	GA	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.600;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr5	42799719	rs4041462	T	TTTA	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	42800724	rs6413428	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	42801268	rs3877899	C	T	8950.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:215,414:0.66:629
chr5	43066774	rs316408	T	C	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:268,126:0.32:394
chr5	43120098	rs511340	A	G	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:111,176:0.61:287
chr5	43161337	rs903391	A	G	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr5	43168174	rs11432863	C	CT	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr5	43292483	rs113830463	C	CTTACTATGAA	1761.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	43292808	rs9292869	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	43294357	rs138459217	TAAGTAA	T	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr5	43297032	rs3733768	C	T	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	43297144	rs3733769	A	G	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:438,220:0.33:658
chr5	43298557	rs35239179	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr5	43388399	rs3822423	G	T	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:90,127:0.59:217
chr5	43388439	rs3733767	G	T	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:86,143:0.62:229
chr5	43487874	rs3776423	T	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	43488115	rs150127661	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr5	43492265	rs6876588	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	43492978	rs10039298	G	A	10709.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr5	43493592	rs7732089	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	43505993	rs7710628	A	G	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	43509348	rs6872851	T	A	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	43509462	rs11415989	T	TC	3986.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	43527673	rs4318791	C	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	43530035	rs6866325	G	C	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	43533992	rs11741521	A	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	43535754	rs6869933	G	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	43609343	rs10057103	C	T	15882.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:2,631:1.00:633
chr5	43612984	rs139409541	T	TA	1812.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.974;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-0.169;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:4,85:0.96:89
chr5	43675492	rs113682759	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr5	44305309	rs2290070	C	G	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:85,106:0.55:191
chr5	44310492	rs6881797	A	T	14804.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr5	44812271	rs113581328	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	45267103	rs112886466	T	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr5	45396488	rs35841808	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.61;ReadPosRankSum=0.502;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	49695808	rs145221279	A	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	49698180	rs13172025	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	49698977	rs201510379	T	TA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.544;QD=1.16;ReadPosRankSum=2.129;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr5	49698986	rs13154223	C	A	1427.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.523;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=-0.281;QD=19.83;ReadPosRankSum=1.008;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:7,65:0.90:72
chr5	49701519	rs34041280	CTGT	C	2299.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	49701755	rs2271236	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.70;QD=27.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	49706689	rs10061275	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.54;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	50040778	rs282561	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	50045967	rs2442107	G	T	979.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.992;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.908;SOR=0.354;set=HC	GT:AD:AF:DP	1/1:4,51:0.93:55
chr5	50046131	rs35347195	G	A	362.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	50046139	rs282553	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	50052800	rs282551	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	50052888	rs282550	C	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	50053015	rs282549	G	A	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	50084508	rs10683094	C	CCTT	128	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	50118250	rs41270305	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	50122645	rs35290606	GT	G	765.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.426;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-1.024;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:8,54:0.87:62
chr5	50683655	rs2288468	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	50685505	rs2303751	A	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	52084300	rs7705797	G	A	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	52084441	rs2897351	C	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	52096889	rs1499280	C	A	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	52157374	rs2447867	T	C	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	52177743	rs16880415	G	A	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr5	52193287	rs1531545	C	T	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	52193391	rs73108325	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	52193414	rs377107895	C	CA	5951.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr5	52204943	rs1478441	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	52221051	rs73754069	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.29;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	52221067	rs10041906	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.997;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	52223516	rs10038773	C	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	52225710	rs112525346	A	AT	216.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	52227798	rs7704476	T	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	52285117	rs28095	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	52322721	rs26678	G	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	52367956	rs3212581	G	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	52781376	rs5867881	GTTT	G	1636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.395;QD=25.57;ReadPosRankSum=0.593;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:7,57:0.89:64
chr5	52781597	rs722910	A	T	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	52899166	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=16.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.113;SOR=2.822;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr5	52942083	rs31304	A	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	53371333	rs156384	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	53371399	rs73112689	C	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	53450542	rs157072	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	53606295	rs35941	T	C	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	53751988	rs7823	T	C	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr5	53814052	rs2548615	T	C	4471.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.753;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,178:0.99:180
chr5	53814394	rs2548614	T	C	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	54252345	rs6877572	T	C	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	54252463	rs6893219	C	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	54253339	rs2897761	T	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	54253555	rs3815922	A	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	54253581	rs3815923	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	54253754	rs6883914	T	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	54319997	rs3822315	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	54320700	rs9292078	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	54403957	rs3104233	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	54404015	rs1875506	C	T	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	54404057	rs1051846	C	G	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	54404178	rs61730831	A	G	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	54410120	rs3104230	A	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	54422970	rs10057041	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr5	54424226	.	G	GA	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.977;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.879;QD=14.34;ReadPosRankSum=0.883;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr5	54459961	rs381852	A	G	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	54468921	rs336115	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	54516521	rs6879219	G	A	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr5	54516752	rs3111181	C	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	54517102	rs34101652	C	CT	198.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	54518660	rs7730048	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	54557438	rs400437	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	54563775	rs143912964	TTTA	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	54693374	rs230802	G	A	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	54693402	rs230801	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	54706325	rs139320115	T	TTTTAAA	7644.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	54709943	rs230766	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	54718618	rs230753	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	54721619	rs3217330	A	AT	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr5	54721642	rs230750	A	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	54737538	rs2278258	T	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	54737791	rs2278257	G	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	54771380	rs6870449	A	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	54804621	rs7707766	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	54830295	rs2292280	T	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	54830380	rs11745331	A	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	54952688	rs11393180	C	CT	60.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.08;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	54990035	.	CA	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.717;QD=1.48;ReadPosRankSum=2.296;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:64,29:0.31:93
chr5	55041943	rs66846694	G	A	317.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.18;ReadPosRankSum=-1.065;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	55042163	rs73127426	G	T	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	55058992	rs3761776	C	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	55081476	rs72761933	C	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	55082474	rs957459	C	T	8310.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	55083837	rs73131156	A	G	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	55094144	rs68029425	A	G	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	55112262	rs35519120	C	CT	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.844;QD=7.41;ReadPosRankSum=1.321;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr5	55149235	rs10940486	G	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:3,74:0.96:77
chr5	55149407	rs10940487	T	C	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	55155402	rs1009639	C	T	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	55179052	rs10940491	A	T	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	55179070	rs68051026	A	G	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	55204331	rs73118497	T	C	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	55210612	rs58699293	C	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	55218412	rs7700525	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	55246001	rs4865999	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	55250727	rs2228046	A	G	9277.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	55255565	rs1373998	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	55264100	rs3730291	G	A	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	55264153	rs2228044	C	G	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	55297382	.	C	A	62.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	55297551	rs6883325	T	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	55398269	rs318818	G	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	55398302	rs6860472	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	55407668	rs1001241	C	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	55412471	rs60779428	C	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	55422681	rs321768	C	T	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	55466397	rs3047043	C	CA	201.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.45;ReadPosRankSum=-0.000;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr5	55479223	rs6885745	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	55479472	rs6871908	A	C	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	55528572	.	AAC	A	55	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=55;QD=29.5;SC=CACGCACATGAACACACACAC;SbPval=1.0;Source=Platypus;TC=14;TCF=11;TCR=3;TR=2;WE=55528581;WS=55528562;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr5	55759715	rs157851	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	55828939	rs74513713	T	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	55830865	rs39837	C	T	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	55851796	rs35483518	C	CA	140.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	56111751	rs28710284	G	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	56152416	rs832567	C	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	56161787	rs832575	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	56177443	rs702689	G	A	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr5	56177743	rs832582	G	A	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	56177848	rs5868032	TCAA	T	20824.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.55;ReadPosRankSum=-0.704;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:6,809:0.99:815
chr5	56178217	rs832583	A	C	9232.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr5	56205643	rs252924	A	G	14711.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr5	56205662	rs252923	T	G	12699.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	56206073	rs33321	G	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	56207123	rs2257505	T	A	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	56209735	rs40497	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	56210923	rs331499	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	56212595	rs832536	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	56221328	rs702679	A	G	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	56224485	rs10684065	T	TTGGC	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	56224714	rs252893	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	56224782	rs150959650	ACT	A	92.70	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.90;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	56224796	rs11747763	T	A	102.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.25;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	56224818	.	T	TCTCACACACA	94.52	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	56224834	rs252891	T	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	56226410	rs252890	T	C	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	56226643	rs144439504	G	A	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	56229288	rs832529	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	56255367	rs111894536	AT	A	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.194;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:108,47:0.30:155
chr5	56526565	rs1544737	G	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	56526783	rs1130203	G	A	8173.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	56527224	rs1862172	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	56527247	rs1862173	T	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	56546749	rs34533194	C	CT	500.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.286;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr5	56547059	rs6893468	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	56777597	rs374736517	C	G	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	56778103	rs61737336	A	G	13393.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr5	57751443	rs1042994	A	G	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	57752504	rs12522386	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	57753116	rs17710502	C	T	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	57753149	rs17767072	A	G	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	57753251	rs2220785	T	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr5	57753437	rs2201293	G	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	57753456	rs702723	C	T	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	57754004	rs697135	C	T	14217.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr5	57754007	rs59135347	T	G	14200.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	57754040	rs17710615	G	A	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	57754132	rs697134	G	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	57754808	rs697133	G	A	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	57790337	rs7704785	T	C	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	57838060	rs115529182	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	57838325	rs143876411	G	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	57842049	rs6870990	C	G	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	57853985	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-3.087;QD=2.90;ReadPosRankSum=1.139;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	58120753	rs75681594	GT	G	177.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	58271713	rs112200987	T	TA	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr5	58284283	rs3805556	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	58286625	rs1553114	C	T	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	58286737	.	GA	G	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.646;QD=2.23;ReadPosRankSum=0.734;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:100,49:0.33:149
chr5	58286836	rs1973451	A	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	58287553	rs3840337	AAAC	A	1368.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	58289046	rs7737685	G	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	58289334	rs7724713	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	58295390	rs139662781	A	ATATG	1270.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	58297703	rs16888990	T	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	58297881	rs2968014	A	G	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	58334645	rs2279737	A	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	58475985	rs9292194	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	58476117	rs9292195	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	58476232	rs11749543	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	58489218	rs1445950	G	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	58489384	rs27175	G	A	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	58511501	rs6450512	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	58882331	.	C	CAA,CA	106	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5014,0.4986;HP=16;HapScore=3;MGOF=176;MMLQ=25;MQ=60.0;NF=1,1;NR=5,5;PP=106,19;QD=18.1666666667;SC=TATTGAATCCCAAAAAAAAAA;SbPval=0.46;Source=Platypus;TC=10;TCF=1;TCR=9;TR=6,6;WE=58882339;WS=58882321;set=Platypus	GT:AF:DP	0/1:0.60:10
chr5	59188953	rs6866988	T	C	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	59725671	rs789390	T	G	1295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.114;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.849;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:1,48:0.98:49
chr5	59940502	rs6877561	A	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	59995742	rs1379112	C	A	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:3,135:0.98:138
chr5	60063576	rs1460958	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	60064385	rs9291696	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	60064632	rs34437042	CT	C	3059.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	60083275	rs10072745	C	A	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	60186618	rs2306350	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	60186975	rs2306351	C	A	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	60199363	rs4647102	C	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	60200455	.	GTGTGTGTATATATATATATATATATATATA	G	673	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5266;HP=2;HapScore=1;MGOF=11;MMLQ=27;MQ=60.0;NF=1;NR=0;PP=673;QD=684.0;SC=TATAGTGTGTGTGTGTGTATA;SbPval=1.0;Source=Platypus;TC=2;TCF=1;TCR=1;TR=1;WE=60200492;WS=60200445;set=Platypus	GT:AD:AF:DP	1/0:1,1:0.50:2
chr5	60241142	rs158921	G	A	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	60369083	rs10471502	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	60448903	rs33927273	T	TAA	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	60628153	.	GGGC	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.475;QD=2.60;ReadPosRankSum=0.251;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr5	60628411	rs75429795	G	T	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	60628414	rs111274143	G	T	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	60786880	rs7732234	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	60789972	.	CGG	C	421.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.889;QD=18.34;ReadPosRankSum=2.896;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr5	60789973	.	GGAG	ACGG	244	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=51;MMLQ=24;MQ=58.9;NF=8,3;NR=4,3;PP=244,83;QD=25.6223229052;SC=ACACACACACGGAGAGAGAGA;SbPval=0.64;Source=Platypus;TC=20;TCF=13;TCR=7;TR=12,6;WE=60789983;WS=60789963;set=Platypus	GT:AD:AF:DP	0/1:8,12:0.60:20
chr5	60789973	rs145935854	GGAG	GG	32.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	0/1:0.19:21
chr5	60789975	.	A	ACG	421.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.889;QD=18.34;ReadPosRankSum=2.758;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr5	60982107	rs36025054	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.603;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr5	60982634	rs113752989	A	AT	658.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr5	60982841	rs16893687	G	A	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	61643816	rs3776615	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	61643910	rs73102041	C	A	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	61657228	rs247265	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	61657377	rs247266	A	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	61658261	rs115737020	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	61662429	rs12519766	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	61668142	rs78975973	A	G	164.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	61669490	rs73104056	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	61669503	rs73104058	T	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	61676902	rs247253	G	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	61676911	rs247254	T	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	61687663	rs16890718	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	61689743	rs16890722	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	61694379	rs247264	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	61697859	rs27089	C	T	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	61733348	rs153857	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	61745737	rs11329383	CT	C	1919.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:6,111:0.95:117
chr5	61781127	rs26640	C	A	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	61785936	rs26644	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	61786153	rs79558975	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	61826663	rs32179	G	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	61874619	.	TA	T	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.940;QD=3.33;ReadPosRankSum=2.325;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:73,55:0.43:128
chr5	62073118	rs1845526	G	C	12371.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr5	62073197	rs16891065	C	T	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	63496919	rs142657245	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	63665335	rs28615727	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr5	63890387	rs4700641	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	64020241	rs16879016	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	64023924	rs10471638	C	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	64023981	rs275819	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	64050294	rs113306461	C	CT	110.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	64064243	rs3756740	G	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	64064943	rs1363953	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64070812	rs10057598	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	64096055	rs10062054	A	C	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	64096069	rs10055003	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	64097252	rs139589196	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	64099941	rs200513803	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=-0.900;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	64181525	.	G	GGTGTGTGTGT	749.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.65;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	64267431	rs2278352	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	64267595	rs2278351	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	64313879	rs2910769	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	64447660	rs6879867	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	64569405	rs1423424	T	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	64747918	rs3830368	T	TG	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	64766519	rs368646553	ATT	A	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.84;ReadPosRankSum=1.611;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	64766523	rs114290460	T	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	64766558	rs34345975	AATT	A	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	64825102	rs1017576	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	64837105	rs4700085	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	64838584	rs6891597	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	64838758	rs6891955	G	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	64847543	rs6893491	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	64847680	rs2305117	A	G	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	64848442	rs3213938	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	64848598	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.921;QD=2.20;ReadPosRankSum=0.186;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr5	64931971	rs5868412	C	CT	198.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.730;QD=9.46;ReadPosRankSum=-0.085;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr5	64966091	rs146407384	G	A	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	64968170	rs5868414	AT	A	462.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	65008946	rs3833969	GT	G	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr5	65054587	rs34339013	G	A	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	65073224	rs34979	C	A	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	65075942	rs6449790	C	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	65088175	rs6896574	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	65105622	rs2561196	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	65108215	rs2254485	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	65288791	rs27132	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	65308055	rs706678	C	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	65310714	rs186256939	G	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	65316997	rs33911008	TA	T	45.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	65317181	rs706679	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	65317332	rs784276	A	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	65317338	rs706680	T	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	65459773	rs3763061	T	C	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	65474491	rs73109315	A	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	65892668	.	A	AGCCGCC	1491.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.417;QD=38.25;ReadPosRankSum=0.416;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr5	66084378	rs2252849	A	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	66084676	rs183763	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	66166427	rs1160971	CAT	C	3004.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	66195701	rs458115	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	66212985	rs37567	C	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	66300994	rs60088557	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	66416764	rs2254790	C	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	66429329	rs2371882	G	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	66438174	rs10078626	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	66459519	rs55831870	A	C	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	66459878	rs1705399	G	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	66462069	rs4699896	A	G	24618.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:0,963:1.00:963
chr5	66478626	rs2230525	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	66480004	rs1697144	T	C	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr5	67493863	rs73126543	T	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	67522722	rs706713	C	T	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	67522920	rs3730077	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	67535810	rs72757662	A	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	67569391	rs2302974	A	C	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	67569479	rs2302975	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	67575344	rs16897620	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	67575642	rs3815701	A	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	67587994	rs3730087	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	67589697	rs146841842	G	GAGT	1356.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	68409094	rs164393	A	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	68412048	rs34215592	A	AT	1539.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	68415902	rs56943665	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	68470559	rs426392	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68470599	rs3087334	C	CATTA	2031.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	68471247	rs1128761	G	A	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	68473305	rs3087333	A	AT	2568.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	68491410	rs17271763	G	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	68524848	.	CAA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.77;ReadPosRankSum=-0.861;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr5	68530922	rs115673494	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	68531099	rs72767837	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	68531253	rs2972388	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	68551507	rs2291519	T	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	68564985	rs59967147	TA	T	700.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.97;MQRankSum=1.234;QD=14.01;ReadPosRankSum=0.613;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:6,44:0.88:50
chr5	68572668	rs4077460	C	T	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	68596068	rs28704183	C	G	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	68607139	rs77690023	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	68692375	rs34097088	T	TA	150.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.317;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,14:0.82:17
chr5	68862361	rs375045774	TG	T	268.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=-5.670;QD=6.40;ReadPosRankSum=0.277;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr5	68862362	rs200135651	G	T	87.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=3.829;QD=1.91;ReadPosRankSum=0.863;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr5	68862363	.	TGG	T	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=1.197;QD=0.86;ReadPosRankSum=0.387;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr5	68862365	rs201465285	G	T	691.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.23;MQRankSum=-1.906;QD=16.47;ReadPosRankSum=-0.251;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr5	68902829	rs189471348	T	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr5	68902992	rs200966956	C	T	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=46.80;MQRankSum=3.189;QD=10.69;ReadPosRankSum=-2.507;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:43,49:0.53:92
chr5	69325573	.	CT	C	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.45;MQRankSum=-8.386;QD=1.44;ReadPosRankSum=2.739;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:193,68:0.26:261
chr5	70200973	rs189447511	C	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-7.027;QD=1.37;ReadPosRankSum=2.322;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr5	70200991	.	CTT	C	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-1.010;QD=8.75;ReadPosRankSum=1.736;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:61,46:0.43:107
chr5	70247901	rs143838139	T	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr5	70307464	rs4976210	T	C	10959.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,424:1.00:425
chr5	70308251	rs28409706	C	T	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	70841097	rs78106443	TA	T	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.516;QD=1.30;ReadPosRankSum=1.366;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr5	70922712	rs77085070	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	70932170	rs7444232	G	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	70945075	rs10064079	A	G	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr5	70948385	rs6888301	T	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	70948654	rs2242372	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	71403273	rs3112401	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	71403306	rs3112402	T	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	71412292	rs78329240	A	G	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	71489082	rs34485863	G	GT	2696.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=24.97;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	71489169	rs67199223	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.873;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr5	71490962	rs1866374	A	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	71522125	rs9293821	A	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	71524163	rs10942927	A	T	11124.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr5	71630759	.	G	C	230.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr5	71739546	rs4267851	C	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	71743024	rs10043295	G	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	72112421	rs34648	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	72144209	rs34652	C	T	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	72147269	rs34655	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	72151758	rs116204058	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	72151858	rs34660	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	72174432	rs266435	C	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.07;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	72174553	rs266436	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	72182841	rs115153597	T	C	185.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	72182860	rs373707236	G	A	318.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	72183055	.	CCTAAGTCCAGTTTGAATTATGTAAGTTGGCTTCTTACTACTATTAGGTACTAATAAGGCTAGGCTACTTTAAGG	C	1623.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	72184098	rs17606	C	T	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	72347090	rs7712673	A	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	72347223	rs7712838	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	72349835	.	A	G	398.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	72350290	rs62362200	A	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	72370745	rs7732230	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	72378703	rs11313621	AT	A	223.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.605;QD=11.19;ReadPosRankSum=1.206;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr5	72419410	rs7731777	A	G	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	72470055	rs16903311	C	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	72743299	.	G	GGC	1267.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=43.71;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	72798502	rs200370518	GTT	G	945.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.572;QD=19.30;ReadPosRankSum=1.325;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,41:0.84:49
chr5	72800408	rs703882	G	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	72800863	rs59856963	C	CT	327.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=0.294;SOR=1.811;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr5	72850010	rs73765414	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	72861580	rs16870592	C	T	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	72865307	rs347234	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	72868546	rs1220634	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	72872766	rs1220622	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	72873011	rs73762104	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	72873764	rs73762105	A	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	72875313	rs73762106	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	73069581	rs4704097	A	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	73090165	rs10683146	A	AGTT	8140.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	73090261	rs7716253	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=42.91;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	73090267	rs78041050	G	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=45.16;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	73091149	rs73118524	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	73144845	rs2973568	A	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	73153389	.	T	TACAC	1496.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.435;QD=39.39;ReadPosRankSum=0.726;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr5	73160730	rs1014550	G	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	73163831	rs2931423	C	T	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	73163861	rs2931422	C	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	73163965	rs2973558	C	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	73164138	rs34777247	AT	A	94.86	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr5	73178550	rs2973528	T	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	73190119	rs2973530	T	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	73190174	rs34729826	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	73190200	rs79296554	G	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	73194039	rs73762542	A	G	378.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=8.751;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=1.883;SOR=3.897;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	73197185	rs434065	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	73197200	rs384927	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	73218954	rs423333	C	T	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	73219109	.	T	TAA	774.73	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	73930442	rs300240	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	73930751	rs300239	C	T	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	73931246	rs442425	T	C	18713.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.57;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,732:1.00:732
chr5	73932315	rs9176	T	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	73981270	rs820878	T	C	22020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.620;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=1.593;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,866:1.00:867
chr5	73992609	rs1665894	G	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	74011541	rs72764638	T	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.928;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr5	74028752	rs10572369	GACACACAC	GAC,G	1848.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/1:0.98:50
chr5	74135831	rs139146846	C	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	74324437	rs3811986	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	74324548	rs3811987	G	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	74324902	rs4704166	C	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	74433839	rs5868765	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.608;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr5	74651084	rs3846662	A	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr5	74675076	rs7700468	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	74678060	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr5	74681974	rs75952141	G	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	74848347	rs182510674	A	T	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	74877286	rs5744668	G	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	74877308	rs5744669	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	74877803	rs5744672	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	74931676	rs200681566	CCCAGT	CT,C	7852.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=176;set=Intersection	GT:AF:DP	1/1:1.00:174
chr5	74931681	rs200161079	TG	T	7854.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	74931682	.	G	T	1679	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=20;MQ=59.93;NF=49;NR=52;PP=1679;QD=16.9680318074;SC=CTAGCCCAGTGGCAAGACATA;SbPval=0.58;Source=Platypus;TC=108;TCF=53;TCR=55;TR=101;WE=74931690;WS=74931666;set=Platypus	GT:AD:AF:DP	1/1:7,101:0.94:108
chr5	74951910	rs79221210	C	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	74959220	rs6869286	A	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	75003678	rs2307111	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	75470086	rs10805899	T	C	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	75648940	rs66963762	AT	A	1454.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=20.78;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	75884734	rs1131232	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	75886168	rs2270907	A	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	75888788	rs3736394	G	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	75904811	rs3822529	C	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	75907065	rs3797390	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	75923294	rs2431352	T	G	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	75923307	rs2909888	A	G	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	75924469	rs3822541	G	T	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	75927606	rs3797409	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	75932768	rs61282243	CAT	C	397.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	75964462	rs3815778	T	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	75964702	rs3764935	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	75967514	rs34357630	GA	G	184.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.32;ReadPosRankSum=-1.534;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	76114963	rs1529505	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	76115109	rs113107082	AG	GT	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	76128521	rs616235	G	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	76129053	rs631465	T	C	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	76171252	rs1320308	A	C	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	76254900	rs76328154	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	76259350	rs7728378	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	76326885	rs2278241	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	76331387	rs148385240	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	76335623	rs35359101	A	C	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	76359024	rs34400049	C	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	76373240	rs2303713	AG	GC	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	76621612	rs4133658	A	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	76704849	rs186753	T	C	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	76707435	.	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.733;QD=1.71;ReadPosRankSum=1.895;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr5	76708987	rs335614	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr5	76709249	rs335615	A	T	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	76709268	rs335616	AA	GG	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	76722443	rs40594	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	76729193	rs462581	G	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	76733379	rs919224	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	76734084	rs33204	C	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	76736907	rs2560076	G	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	76747087	rs335609	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	76758803	rs426381	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	76760495	rs410620	T	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	76760657	rs11433376	G	GA	3797.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.70;ReadPosRankSum=-1.147;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:4,171:0.98:175
chr5	76785405	rs72593800	T	TG	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.020;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr5	76785407	rs75709452	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.389;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr5	76787919	rs42764	C	G	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr5	76916335	rs5868876	G	GC	5085.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	76926578	rs13357072	T	C	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	76926651	rs62362480	A	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	77071835	rs352575	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	77425028	rs6453373	A	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	77521559	.	TAAAG	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr5	77711556	rs6872819	C	T	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	77745853	rs66744502	C	CA	2964.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=38.50;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	77745862	rs200104831	G	GT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.666;QD=2.48;ReadPosRankSum=2.235;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr5	77755035	rs6453391	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	77784738	rs2241566	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	78317413	rs731124	C	T	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:3,267:0.99:270
chr5	78324352	rs1805074	A	G	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	78324482	rs2303129	T	C	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	78326750	rs1805073	G	C	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr5	78326922	rs140713637	CGGGCAGCGGGGAGTG	C	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	78328560	rs1805072	G	A	16716.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:2,658:1.00:660
chr5	78373251	rs11375024	G	GA	440.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.607;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr5	78373514	rs7732821	A	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	78378543	rs116752727	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	78416973	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.443;QD=1.03;ReadPosRankSum=-1.151;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr5	78421780	rs694290	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	78573778	rs35345418	G	A	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	78573790	rs13182512	A	T	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	78573970	rs16876598	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	78586914	rs10043008	G	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	78596044	rs10514159	T	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	78697991	.	C	CT	44.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-0.812;QD=4.01;ReadPosRankSum=2.100;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	78742980	rs6862358	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	78936598	rs112011692	AT	A	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	78964887	rs36079132	A	ATG	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr5	79024722	rs61465432	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr5	79024734	rs1541813	A	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr5	79024779	rs16877109	A	G	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr5	79025317	rs1366270	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	79027605	rs6893869	T	C	10876.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-1.495;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:2,419:1.00:421
chr5	79027700	rs62621915	T	C	7486.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	79028472	rs4704585	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	79029288	rs1428223	C	A	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	79029383	rs1428224	T	G	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	79029749	rs1428225	A	G	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr5	79030045	rs4639193	A	G	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	79030346	rs16877151	A	G	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	79032067	rs192180434	G	T	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr5	79033306	rs2278239	A	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr5	79034696	rs141894764	A	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	79035144	rs142926727	C	A	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	79086620	rs13155037	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	79086649	rs259096	G	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	79086903	rs10052867	G	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	79281658	rs7734858	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	79282544	rs2291524	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	79351544	rs412379	G	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	79351735	rs423906	C	T	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:4,404:0.99:408
chr5	79351852	rs438042	A	T	10330.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	79351859	rs405482	GG	AA	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.61;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	79354147	rs368936	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	79354647	rs432267	C	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	79354702	rs411943	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	79355192	rs2434302	T	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	79355471	rs401302	C	T	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	79355559	rs114966377	C	T	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr5	79361402	rs10600128	CATAAT	C	1951.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	79363933	rs17885704	G	A	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	79366080	rs256439	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	79368016	rs256437	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	79443169	rs7712447	A	G	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	79446904	rs73772260	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	79454634	rs60691088	A	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	79473059	rs11429938	C	CT	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	79551867	rs1966470	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	79616083	rs1862136	G	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	79734297	rs259028	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	79734409	rs259029	G	A	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	79735707	rs79006692	G	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	79741304	rs34312342	CT	C	168.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=-0.157;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr5	79743821	rs2251759	T	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	79745469	rs249038	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	79747262	rs76624314	C	T	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	79809658	rs249011	A	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr5	79815658	rs369998	T	C	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr5	79855372	rs32857	A	G	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	79855876	rs187262	T	C	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	79950512	rs1105524	A	G	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr5	79950723	.	G	GCCCCCAGC	5861.73	.	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.24;QD=40.71;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	79950726	.	C	CCCCA	5875.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.55;QD=40.80;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	79950727	.	G	GCGCCCCCAGCGCCCC	6606.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.86;QD=43.18;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	79950781	rs1650697	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	79974646	rs836807	T	C	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	80021193	rs245016	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	80021445	rs32952	A	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	80149981	rs184967	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	80382806	rs7733625	G	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	80388554	rs2592094	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	80390225	rs505748	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	80390290	rs498119	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	80409229	rs26422	C	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	80409729	rs10942942	T	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	80476185	rs79201932	T	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	80504282	rs11957258	G	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	80504353	rs71000806	CTTTTTTTTTTTTTT	C	587.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.49;ReadPosRankSum=2.100;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr5	80508071	rs12658249	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	80521433	rs16878552	G	A	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	80553475	rs148928292	C	CTAGG	340.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	80639501	rs76125752	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	80689730	rs367544811	AC	A	1137.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	80689953	rs13178695	C	A	5989.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.055;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-1.381;SOR=0.448;set=HC	GT:AD:AF:DP	1/1:1,232:1.00:233
chr5	80690028	rs115140513	G	A	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	80736444	rs9596	A	G	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	80744758	rs3764986	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	80756855	rs6893826	A	T	561.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=2.582;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr5	80785011	rs66563423	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	81571035	rs76062650	T	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr5	81572464	rs226199	G	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	81573992	rs226198	C	T	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	81606239	rs114913548	A	G	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	82135819	rs139917914	T	TA	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	82135830	.	C	CCAA	1163.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.56;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	82136064	rs113309601	T	TTCTTC	2616.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	82786194	rs12332199	T	C	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	82789647	rs4470745	A	G	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	82815408	rs2287926	G	A	7949.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	82816332	.	T	C	3116.77	.	AC=2;AF=1.00;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	82835852	rs61733401	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	82836912	rs61733389	G	A	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	82875800	rs308365	C	T	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	82940101	rs56958621	TA	T	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	82940273	rs2242128	C	G	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	82940510	rs1457081	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	83239132	rs146077789	GA	G	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.350;QD=2.34;ReadPosRankSum=2.267;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr5	83343964	rs2301088	A	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	83433000	.	C	CAT	1939	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=19;MQ=59.85;NF=14;NR=8;PP=1939;QD=89.4090909091;SC=TGTGTGTATACATACACACAC;SbPval=0.79;Source=Platypus;TC=64;TCF=36;TCR=28;TR=22;WE=83433014;WS=83432988;set=Platypus	GT:AD:AF:DP	1/1:42,22:0.34:64
chr5	83433002	.	TAC	T	775.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.297;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:84,44:0.34:128
chr5	83433004	rs350490	C	T	1508.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.103;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:51,72:0.59:123
chr5	83433006	rs200843007	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.464;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr5	85582712	rs2964837	T	C	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.45;QD=25.95;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	85586584	rs10038100	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.06;QD=28.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	86633973	rs3752862	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	86637164	rs35694079	G	GA	77.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	86642748	rs139185417	C	T	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	86658551	rs115394820	C	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	86662074	rs74412753	G	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	86662349	rs3842492	G	GA	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	86670546	rs200643915	G	GT	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.882;QD=12.62;ReadPosRankSum=-0.240;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr5	86674102	rs77608942	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	86679495	rs368117332	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.598;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr5	86679640	rs80152927	T	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	86682617	rs7736009	T	C	1936.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.35;ReadPosRankSum=1.510;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr5	86682622	rs7715868	C	T	1961.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.04;ReadPosRankSum=1.038;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr5	86688123	rs6879293	G	A	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	86695178	rs3093827	T	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	86697426	rs3093815	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	86705005	rs150775288	TTC	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.703;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr5	86707121	rs3093785	T	C	6185.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.10;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	87497977	rs358289	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	87502325	rs357515	G	A	654.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=-2.144;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr5	87963272	rs5869431	G	GA	2528.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	88018388	rs373455781	GA	G	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:12,65:0.84:77
chr5	88416255	rs139453030	A	AAC	829.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr5	88416354	rs9293511	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	89692490	rs2972966	G	A	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	89705752	rs11315430	GC	G	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	89769728	rs2162986	T	C	8970.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr5	89781594	rs2115500	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	89786388	.	A	ATTTT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=8.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.112;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	89854567	rs73176098	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	89854790	rs7706392	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	89909995	rs12108970	T	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=23.21;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	89910125	.	TG	T	856.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=32.95;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	89910915	rs143724293	CTGTT	C	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	89915021	rs16868854	A	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	89924976	rs2366771	C	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	89938423	rs41304890	G	A	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	89938587	rs2366773	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	89938869	rs73181640	T	A	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	89943571	rs2366777	G	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	89949651	rs61740119	A	G	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	89968626	rs1028191	A	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	89975202	rs7721378	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	89979589	rs4916684	G	A	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	89979750	rs16868972	G	T	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	89981611	rs16868974	C	T	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	89986519	rs73193232	G	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	89988651	rs73193236	G	A	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	89990324	rs1878878	A	G	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr5	89990545	rs10068473	C	A	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	90001988	rs1160121	G	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	90002220	rs60522638	C	CT	917.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr5	90015792	rs6881412	C	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	90016129	rs6452906	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	90020868	rs7723259	A	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	90021499	rs11310205	GT	G	82.82	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	90024735	rs2366928	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	90052372	rs2438349	C	T	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	90059001	rs881289	T	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	90075060	rs2443076	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	90078821	rs113674072	A	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	90107108	rs2438374	A	G	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	90111521	rs41304884	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	90119123	rs146689602	G	GA	1155.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	90119324	rs2438378	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	90398269	rs1986718	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	90445829	rs35858094	T	TTC	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=63.33;MQRankSum=0.000;QD=7.71;ReadPosRankSum=3.112;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr5	90449031	rs7726023	T	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr5	90669400	rs6452952	A	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	90671274	rs1363839	A	T	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	93388777	.	T	TATAGATAG	700.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	93731985	rs308207	A	G	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	93788638	rs17326194	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	93859799	rs2044909	T	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	93872945	rs6556847	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	94001509	rs115288968	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	94006023	rs7709494	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	94014800	rs1549179	T	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	94043353	rs7735924	G	T	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	94046387	rs306573	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	94114594	rs255372	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	94134932	rs114128080	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	94206957	rs201600301	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.935;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:83,22:0.21:105
chr5	94278129	rs293035	T	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	94278154	rs159351	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	94404660	rs11357469	CT	C	84.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	94619545	rs5869672	G	GC	1905.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.242;QD=24.12;ReadPosRankSum=-0.328;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:2,77:0.97:79
chr5	94619905	rs79130718	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr5	94620304	rs61185942	CCCT	C	2465.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=43.26;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	94654020	rs75988874	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	94727179	rs200301845	CA	C	1485.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	94728631	rs2546097	G	T	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	94741837	rs253715	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	94741973	rs253716	T	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	94756261	rs62365043	C	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	94756278	rs62365044	G	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	94772540	rs6878669	C	T	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	94820639	rs6891486	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	94842619	rs144081410	G	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	94852123	rs140254019	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	94877407	rs75592132	A	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	94878992	rs114914951	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	94891059	rs61733082	G	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	94903527	rs73777227	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	94916765	rs17084910	G	A	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	94927426	rs58373522	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	95011426	rs2548125	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr5	95119408	rs888808	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	95124328	rs3822753	T	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	95159822	rs3756705	G	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	95224700	rs199699795	GA	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=11.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.299;SOR=2.473;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr5	95233795	.	GAA	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	95234392	rs3777202	A	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	95255379	rs4642392	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	95734811	rs59466438	T	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	95761432	.	TAA	T,TA	732.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.554;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.783;QD=10.47;ReadPosRankSum=-0.954;SOR=1.122;set=HC	GT:AD:AF:DP	1/2:15,22,33:0.31,0.47:70
chr5	95768847	rs6230	A	G	245.18	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr5	95998024	.	G	GCTCCCTCCCTCCCTCCCTCCCTCTCTCC	1818.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=86.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	96031569	rs9667	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	96066652	rs151904	C	T	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	96078309	rs26503	G	A	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	96079402	rs26506	C	T	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	96089658	rs27583	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	96089976	rs27772	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	96090506	rs144702299	C	T	111.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	96093222	rs27654	G	A	7047.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-0.151;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:2,274:0.99:276
chr5	96093441	rs27969	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr5	96097895	rs27980	T	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	96098214	rs27582	G	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	96101066	.	T	TA	2957	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=3;HapScore=1;MGOF=49;MMLQ=27;MQ=57.58;NF=2;NR=69;PP=2957;QD=20;SC=AATTCACTAATAGTGAAATTT;SbPval=0.56;Source=Platypus;TC=74;TCF=2;TCR=72;TR=71;WE=96101074;WS=96101056;set=Platypus	GT:AD:AF:DP	1/1:3,71:0.96:74
chr5	96101944	rs27524	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	96107202	rs27689	G	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	96116031	rs71978924	AACTC	A	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	96116940	rs27042	G	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	96117300	rs27043	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	96118852	rs27044	G	C	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	96119579	rs70981840	A	ACT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	96119661	rs150327661	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	96121370	rs11386832	T	TA	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr5	96121406	rs469876	A	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr5	96121524	rs469783	C	T	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr5	96121715	rs469758	C	T	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	96122260	rs30379	T	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	96122281	rs30380	A	C	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	96124330	rs30187	T	C	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	96124447	rs30186	G	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	96125910	rs26510	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	96126197	rs27710	A	G	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	96126308	rs27529	A	G	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	96127905	rs27640	T	C	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	96129512	rs27434	A	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	96130836	rs26618	T	C	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	96139250	rs26653	C	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	96253104	rs1363908	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	96320749	rs200858982	C	T	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	96322419	rs38034	C	T	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	96329857	rs27304	G	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	96341768	.	ATT	A	35	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=5;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=35;QD=21.0;SC=ATATATATATATTTTGTAGGT;SbPval=0.56;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=96341777;WS=96341758;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr5	96349498	rs138938447	C	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	96364063	rs27712	C	T	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	96438687	rs7703924	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	96498783	rs8654	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	96502072	rs7714525	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	96503523	rs160632	C	T	9451.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr5	96507182	rs112703502	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	96512865	rs2548319	T	A	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	96512871	rs2544772	T	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	96514626	rs75104853	C	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	96514717	rs62377109	C	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	96519030	.	T	C	3950.77	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	96519094	rs3806945	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	98109828	rs2547973	G	A	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.30;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	98109838	rs2662263	A	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.01;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	98192164	rs138635992	AAGG	A	6427.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	98192465	rs692832	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	98194589	rs2545735	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	98194618	rs2545734	T	A	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.16;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	98194781	rs330421	C	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	98194888	.	C	T	46	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=1;HapScore=2;MGOF=30;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=46;QD=26.9237375157;SC=ATTTTTAAAGCATGAACTACT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=98194896;WS=98194878;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	98195818	rs325203	A	G	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	98199204	rs161941	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	98205326	rs144514283	GCACACACACA	G	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	98210868	rs162140	T	A	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	98218734	.	C	CA,CAA	50.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=21;set=Intersection	GT:AF:DP	0/1:0.38:21
chr5	98221383	.	A	AT	1170.73	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	98232809	rs326468	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	98261891	rs161744	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	99921841	rs2370612	G	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	100222343	rs6595534	A	G	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	101575091	rs62370437	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	101592742	rs174414	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	101592809	rs261101	T	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	101593486	rs398228	CT	AG	363.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	101595831	rs386464	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	101595885	rs148885155	T	TGA	3476.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr5	101606518	rs33922930	G	GA	744.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	101627027	rs841929	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	101627411	rs2600824	C	T	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	101627414	rs2548726	A	T	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	101627435	rs841928	C	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	101631526	rs3114660	C	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	101631592	rs3114659	A	G	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	102202076	rs73192734	G	A	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	102202979	rs114014768	T	A	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	102284068	rs182339803	A	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	102310166	rs3733939	G	A	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	102338947	rs148101925	C	G	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	102363858	rs26433	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	102364542	rs2067133	A	AAT	2599.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	102494751	rs257292	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	102512570	rs11408825	C	CA	1890.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	102890560	rs11373550	G	GA	1239.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr5	102891695	rs10045774	A	G	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	102894447	rs3734087	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	103978833	rs67667580	A	G	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=20.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	103978969	rs33818	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	104434339	.	G	GGAAAGAAA	187.87	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.12;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	106723107	rs11377163	C	CT	695.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	107006446	rs35553	T	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	107560101	rs2044710	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	107684324	rs1862195	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	108203451	rs34195313	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-2.249;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr5	108387248	rs79836755	G	A	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	108516629	rs6594349	A	G	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	108673125	rs3749669	G	A	965.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=1.319;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:5,50:0.91:55
chr5	108679870	rs142828555	T	TTTAA	1920.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.02;ReadPosRankSum=-2.246;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr5	108680387	rs73781293	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	108691730	rs199524515	GA	G	496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.443;QD=8.87;ReadPosRankSum=-0.084;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:17,39:0.70:56
chr5	108704183	rs6896931	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	108713970	rs10042721	C	T	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	109034215	rs10652843	G	GGT	4163.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	109049507	rs56350644	C	CT	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.495;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr5	109106249	rs111700837	A	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	109139774	.	C	G	622.77	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	109155687	.	A	G	135.84	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	109181682	rs3186988	A	T	13172.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr5	109219920	rs113443220	CA	C	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	109220088	rs140313574	A	C	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	109864483	rs17132193	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr5	109940707	rs6897672	G	T	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	109940949	rs61018723	T	C	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	109941062	.	G	C	1059.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr5	109946411	rs4277958	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	109953869	rs6882222	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	109953889	.	TA	T	45	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=12;HapScore=2;MGOF=33;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=45;QD=19.0;SC=CTGCATTTAATAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=109953897;WS=109953879;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	109963430	rs6886702	A	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	110091058	rs3213937	A	G	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	110407507	rs2289276	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	110408705	rs11466741	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	110409067	rs2289277	C	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	110448753	rs59359951	T	A	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=1.867;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr5	110461283	rs61261876	A	G	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	110560137	.	AGCG	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.441;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:81,8:0.09:89
chr5	110710360	rs306067	G	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	110819753	rs25925	G	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	110820116	rs6886469	T	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	110840744	rs11454826	G	GA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.323;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:97,25:0.20:122
chr5	111479750	rs62372418	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	111481696	rs17134155	C	T	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	111496598	rs17134162	G	T	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	111497330	rs2290990	C	A	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	111500528	.	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.306;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr5	111500816	.	C	CTAAAA	1526	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.11;NF=0;NR=26;PP=1526;QD=60.3461538462;SC=CATTTCTTCTCTAAAATATAT;SbPval=1.0;Source=Platypus;TC=31;TCF=0;TCR=31;TR=26;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:5,26:0.84:31
chr5	111500822	.	T	TAAA	3050.73	.	AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.21;SOR=2.015;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	111500824	.	T	C	730	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=4;NR=26;PP=730;QD=25.4923737516;SC=CTCTAAAATATATTTGAAAAA;SbPval=0.56;Source=Platypus;TC=30;TCF=4;TCR=26;TR=30;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	111500824	rs33929905	T	TAC	3050.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	111504479	rs7703522	C	T	9585.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr5	111505885	rs1560052	T	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	111505900	rs142179397	CAAATT	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	111506069	rs10040749	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	111530284	rs7719346	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	111540968	rs373807306	T	TC	2063.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	111545857	rs17134247	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	111575293	rs74899050	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr5	111595737	rs78300129	T	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	111754851	rs3749742	C	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	111755408	rs13354202	A	G	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr5	111755690	rs13358734	C	T	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	111756062	rs56239103	G	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	111756077	rs10036273	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	112043282	rs79896135	C	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	112101970	rs2304793	T	C	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	112119462	rs77929348	CAAA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-1.682;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	112164561	rs351771	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	112175770	rs41115	G	A	6096.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	112176325	rs42427	G	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	112176559	rs866006	T	G	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr5	112176756	rs459552	T	A	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	112177171	rs465899	G	A	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	112179909	rs1804197	C	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	112197169	rs137972682	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr5	112217636	rs111457700	GT	G	139.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.146;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr5	112217737	rs35726351	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	112217772	rs140521662	ACTC	A	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	112222694	rs712662	C	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	112227799	rs712665	A	G	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr5	112227939	rs712666	T	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr5	112228667	rs430665	G	A	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	112228765	rs459102	C	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	112238039	rs153546	A	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	112256814	rs149190	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr5	112257242	rs33570	G	C	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	112257908	rs153556	T	C	8837.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr5	112312676	rs33555	T	C	14897.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr5	112328377	rs3733969	A	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	112343544	rs2052484	G	A	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	112346431	rs58980024	TG	T	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.565;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr5	112349070	rs9326869	T	C	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	112364945	rs1363333	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	112379095	rs4277906	T	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	112379289	rs2227948	G	A	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:3,296:0.99:299
chr5	112379434	rs4705755	T	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	112384802	rs6594664	G	A	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	112385004	rs7726296	CA	GC	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	112385035	rs7708603	T	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	112389747	rs4705536	C	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	112399791	rs2227947	G	A	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	112406718	rs4705771	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	112439941	rs6594681	T	C	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	112479004	rs2227949	T	C	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	112629887	rs485210	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	112630074	rs113991478	G	A	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	112676191	rs10900684	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	112769659	rs11953478	C	T	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr5	112769997	rs34936289	C	T	11932.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	112770015	rs35724644	G	T	12275.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	112823998	rs348943	C	T	13415.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.14;QD=26.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr5	112824033	.	T	TGCTGCC	2988	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=62.88;NF=20;NR=104;PP=2988;QD=20;SC=TCGCTGCTGCTGCTGCTGCTG;SbPval=0.49;Source=Platypus;TC=133;TCF=21;TCR=112;TR=124;WE=112824059;WS=112824023;set=Platypus	GT:AD:AF:DP	1/1:9,124:0.93:133
chr5	112824036	.	T	TGCC	4290.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=1.046;MLEAC=2;MLEAF=1.000;MQ=63.17;MQRankSum=-1.931;QD=21.14;ReadPosRankSum=2.335;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:15,188:0.93:203
chr5	112824039	.	T	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=62.94;NF=89;NR=106;PP=2965;QD=20;SC=CTGCTGCTGCTGCTGCCGCTG;SbPval=0.55;Source=Platypus;TC=196;TCF=90;TCR=106;TR=195;WE=112824059;WS=112824023;set=Platypus	GT:AD:AF:DP	1/1:1,195:0.99:196
chr5	112824039	.	T	TGCC	7961.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=63.22;MQRankSum=3.236;QD=25.04;ReadPosRankSum=0.240;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:5,313:0.98:318
chr5	112849801	rs1862315	A	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	112849934	.	G	A	4420.77	.	AC=2;AF=1.00;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	112851109	rs1820057	A	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	112851121	rs1035408	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	112860910	rs112231922	A	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	112868693	rs6594732	C	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	112884197	rs4444963	C	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	112884728	rs4639215	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	112889453	rs113359243	A	C	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	112901494	rs3763139	G	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	112926755	rs2303718	G	A	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	112926982	rs2303717	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	112927888	rs113314175	A	ATT	1364.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.338;QD=37.91;ReadPosRankSum=0.482;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr5	112927900	rs73242858	A	T	1374.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.338;QD=38.19;ReadPosRankSum=-0.482;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr5	112928865	rs3763138	G	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	112929013	rs1132528	T	A	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	113698372	rs1058999	G	C	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	114462355	rs2974617	C	T	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr5	114462589	rs2921623	A	C	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	114462630	rs2974528	T	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	114480313	rs61745684	A	G	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr5	114480364	rs7716270	C	T	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr5	114515657	rs11955164	C	T	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	114588749	rs143060010	C	CAAGT	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	114598297	rs113531864	C	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	114605514	rs73257446	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=28.95;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	114611201	rs35940728	T	C	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr5	114611356	rs267295	A	C	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	114615469	rs73257462	T	C	569.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=2.547;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr5	114632423	rs3111171	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	115141151	rs34916121	C	T	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	115167595	rs3215095	CT	C	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	115176492	rs73267415	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	115176589	rs26536	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	115177262	rs7724740	C	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr5	115177668	rs144226661	G	GAGGC	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.733;QD=8.33;ReadPosRankSum=-1.071;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr5	115188660	rs152368	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	115298232	rs9326980	G	C	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	115298378	rs10062297	C	T	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	115298475	rs12520255	T	C	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr5	115298518	rs12522632	A	G	11013.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr5	115298977	rs1445708	C	T	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr5	115323691	rs35321827	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	115338704	rs1346479	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	115338732	rs1560080	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	115339086	rs6594929	A	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	115341611	rs10078748	G	T	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	115341638	rs10078759	G	C	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	115351150	rs10214076	T	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	115351498	rs17485148	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	115394357	rs6860908	T	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	115394626	rs6880759	G	A	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr5	115426932	rs41296577	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	115469668	rs17138918	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	115628120	rs58821453	CTT	C,CT	1386.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=6.749;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.430;QD=14.15;ReadPosRankSum=1.808;SOR=0.163;set=HC	GT:AD:AF:DP	1/2:12,36,50:0.37,0.51:98
chr5	115783553	rs17139805	C	T	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr5	115784843	rs1968362	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	115803578	rs10551961	AGTGGTG	AGTG,A	7946.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=454;set=Intersection	GT:AF:DP	1/1:0.91:362
chr5	115813726	rs34966	A	G	12095.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr5	115837772	rs154466	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	115838117	rs54100	C	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	117329051	.	T	TAG	5726.73	.	AC=2;AF=1.00;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	1/1:4,167:0.98:171
chr5	117329138	rs4404718	G	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	117896623	rs5870820	GTGTA	G	309.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	117896669	rs5870821	AT	A	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	118324114	rs299207	C	G	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	118437582	rs112134776	T	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	118441043	rs111644844	G	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	118450359	rs77598251	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118451873	rs76268053	T	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr5	118464806	rs79489284	C	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	118464888	rs112226607	C	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	118482975	rs112673276	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr5	118484804	rs7734532	G	A	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	118490402	rs77966622	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	118500981	.	TAAAAA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.366;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr5	118506433	rs147996516	A	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	118513042	rs4421136	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	118513246	rs34139050	C	CTG	2095.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	118532034	rs6595178	A	C	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	118532249	rs73244805	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	118552658	rs372483214	C	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	118556350	rs2271059	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	118690998	rs3813309	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	118691693	rs3797339	C	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	118691929	rs6595185	A	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	118788606	rs11949545	C	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	118809533	rs10601221	CCA	C	1270.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	118811533	rs25640	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	118813316	rs463513	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr5	118825051	rs12653702	G	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	118837834	rs55708333	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118845089	rs32663	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	118845139	rs32664	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	118862971	rs2636961	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	118866879	rs34554885	T	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118877548	rs33926345	T	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	118965343	rs182938171	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	118965623	rs2434599	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	118968669	rs113286225	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	120021819	rs1158194	G	A	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr5	121330223	rs6595336	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	121518309	rs9112	G	A	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	122131082	rs2161391	A	G	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	122137708	rs965821	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	122152520	rs148883473	A	AG	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr5	122161638	rs3213794	A	C	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	122161961	.	A	AT	49	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=6;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=49;QD=34.0;SC=ATTTTTCATAATTTTTTGTAA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=122161969;WS=122161951;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	122165209	rs6885464	T	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	122189640	rs7713253	C	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	122267456	rs246314	C	T	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	122272641	rs30042	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr5	122281695	rs181746100	T	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=28.12;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	122281709	rs5871017	G	GT	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;QD=20.89;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr5	122301079	rs30055	T	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	122359502	rs70988555	A	AAC	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-0.022;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr5	122359839	rs144851383	G	GAC	277.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	122359840	rs374638812	CGTTTTTT	C	277.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	122372402	rs28373879	G	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	122682154	rs2303719	T	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	122682348	rs1047438	A	G	14396.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,565:1.00:565
chr5	122685801	rs485847	G	A	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	122685906	rs35423173	CT	C	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	122718736	rs6595440	G	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	122722370	rs3893854	T	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.42;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	122727026	rs6876883	G	A	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	122728913	rs35574017	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	122734724	.	T	TA	22	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5953;HP=11;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=22;QD=10.3333333333;SC=TTTCAAAAGTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3;WE=122734732;WS=122734715;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr5	122739421	rs7715577	G	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	122754293	rs71574108	GTT	G	659.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.427;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr5	122758268	rs6882791	G	C	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	123966143	.	A	AGTGT,AGT	264.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	0/1:0.86:7
chr5	123974608	rs4371750	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	123984763	rs7708070	C	T	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr5	123985464	rs9764110	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	123985484	rs11422549	C	CA	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	124044428	rs11241764	C	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	125696140	rs11241887	G	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	125759524	rs34490811	A	ACT	3583.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:6,102:0.94:108
chr5	125809072	.	TA	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=1.472;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	125828803	rs4358517	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	125880589	rs2775	T	C	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	125886071	rs1038381	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	125895126	.	G	GT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.064;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	125904208	rs3734174	A	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	125906344	rs6897789	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	125919529	.	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-1.552;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr5	125929000	rs57146066	A	AACACACACACAC	612.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	125929746	rs72789715	T	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	125944219	rs112502491	G	GTGTTTT	1585.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	125967404	rs6862980	T	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr5	125967653	rs12655861	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	125971699	rs7705714	C	T	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	126140522	rs3749830	T	C	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	126145771	rs2271354	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	126168319	rs146905904	AG	A	6111.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	126171974	rs2230151	C	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	126171999	rs1051643	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	126250459	.	A	AACACACACAC	1891.73	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=47.29;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr5	126746277	rs31483	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	126792974	rs3812052	T	A	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	127485599	rs2617618	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	127522153	rs11382084	G	GT	1184.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.491;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=1.341;QD=14.81;ReadPosRankSum=0.635;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:11,69:0.86:80
chr5	127613791	rs426987	C	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.36;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	127614472	rs190450	A	G	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	127622983	rs2042327	C	T	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	127640783	rs27713	G	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr5	127640861	rs27855	A	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	127648188	rs461146	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	127671924	rs32221	A	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.96;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	127680042	rs17676694	A	T	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	127685135	rs154001	C	T	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	127685624	rs255690	C	A	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	128301824	rs2526246	T	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	128301885	rs2526247	T	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	128301971	rs2577541	T	C	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr5	128302368	rs147696009	CCT	C	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr5	128359247	rs31271	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	128732672	rs13171514	A	G	612.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.711;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr5	128863471	rs6595908	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	128990138	.	C	CA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.127;QD=0.74;ReadPosRankSum=-0.344;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr5	129015452	rs30645	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	129015668	rs246443	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	129030616	.	C	T	3512.77	.	AC=2;AF=1.00;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	129040056	rs11749126	A	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	129072943	rs1465686	G	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	129100819	rs35674869	AC	A	362.80	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr5	129240972	rs33917	G	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	129244122	rs32234	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	129244133	rs2431206	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	129519874	rs10066410	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	129521126	rs2015018	A	G	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	130766662	rs1291602	T	C	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	130808198	rs31241	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	130831365	rs40400	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	130867733	rs1029472	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	130982768	rs26006	A	G	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr5	131006082	rs27450	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	131006356	rs26007	T	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	131008194	rs26008	T	C	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	131066577	rs7729787	A	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	131066725	rs7730228	C	A	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	131312238	rs11743803	A	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-1.397;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:16,48:0.75:64
chr5	131312327	rs370652	G	T	7180.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	131321159	rs11740791	G	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	131322494	rs77938	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	131322666	rs67212057	CCACACACTCACA	C	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	131324119	rs71970	T	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	131324250	rs3043838	C	CTG	16976.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	131325888	rs422130	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	131326522	rs5871439	AC	A	9820.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=2.025;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.203;QD=27.98;ReadPosRankSum=0.446;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:4,347:0.99:351
chr5	131330054	rs253944	C	G	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	131347520	rs4705908	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	131534499	rs3749756	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	131546280	rs154483	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr5	131553340	rs2301579	C	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr5	131553428	rs3214098	T	TA	3555.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	131553665	rs154485	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	131593336	rs70974026	C	CG	2002.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	131593363	.	GGCT	G	2229.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;MQRankSum=0.536;QD=39.82;ReadPosRankSum=-0.376;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr5	131593373	.	GCGGCGGCTC	G	1970.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=0.619;QD=36.50;ReadPosRankSum=-0.331;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:4,50:0.93:54
chr5	131602166	rs1007602	T	C	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	131607300	rs55722650	C	T	30588.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0.000;DB;DP=1196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=1.714;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,1166:1.00:1167
chr5	131607402	rs10479000	T	C	33393.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=1321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-1.580;SOR=0.528;set=HC	GT:AD:AF:DP	1/1:7,1295:0.99:1302
chr5	131630852	rs35260072	A	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr5	131649186	rs270607	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	131658085	rs270600	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	131660119	rs273915	G	C	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	131660431	rs273914	A	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	131663062	rs272893	T	C	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr5	131670546	rs272879	C	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	131671769	rs272878	T	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	131676320	rs1050152	C	T	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	131701279	rs367805	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	131719999	rs4551059	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	131730052	rs60522531	CA	C	2252.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	131755477	rs4451042	G	T	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	131792639	rs3214157	A	AT	2503.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:8,114:0.93:122
chr5	131796498	rs2522048	T	C	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	131796573	rs2522049	T	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	131821520	rs142244361	G	GAC	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.416;QD=21.04;ReadPosRankSum=2.273;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr5	131892357	rs2706335	C	T	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	131892979	rs4526098	G	A	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	131995843	rs1295686	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	131995964	rs20541	A	G	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	132035252	.	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.876;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr5	132036252	rs1468216	T	C	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	132036489	rs1468215	A	T	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	132038199	rs3213639	C	T	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	132039132	rs2285700	C	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	132046789	rs11740584	G	C	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	132056147	rs2074529	C	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	132098242	rs30510	A	G	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr5	132149684	rs40274	G	C	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	132150948	rs40470	T	G	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr5	132198199	rs254286	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	132198287	rs254285	C	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	132209164	rs142228782	ATCAC	A	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	132220941	rs3835017	CGTGTGT	C	188.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	132227677	rs6596093	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	132232315	rs739863	G	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	132234152	rs34099243	C	CG	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	132234702	rs66732439	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	132239920	.	G	GA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.549;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr5	132239939	rs12513758	C	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.72;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	132240151	rs12517073	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	132267850	rs56817345	A	AT	736.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	132267859	rs56157864	A	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	132334252	rs3087646	A	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	132358434	rs112173114	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	132387979	rs61745470	T	A	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr5	132388068	rs76836760	T	G	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	132403057	rs11448270	T	TAA	1232.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-0.437;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr5	132403341	rs6596098	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	132403359	rs6596099	T	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	132406290	rs111758373	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	132408905	.	C	CT	1389.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=1.271;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:14,82:0.85:96
chr5	132409074	rs56121115	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	132409650	rs62375234	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	132409904	rs112014979	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	132422448	rs200608379	TTTTTG	T	3339.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	132428498	.	GTTTTTTTTTT	G	1335.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=12.516;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.83;ReadPosRankSum=-1.173;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:3,45:0.94:48
chr5	132428509	.	T	G	1341.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=12.516;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=0.128;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:3,45:0.94:48
chr5	132431998	rs80322587	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	132546059	rs3828692	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	132552842	rs57353187	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	132556432	rs56304413	T	A	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	132559950	rs2303671	T	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	132560760	rs73273884	G	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	132561277	rs2241583	G	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	132569260	rs35758896	GCCT	G	4541.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	132902997	rs113895075	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	133316325	.	TA	T	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.292;QD=2.09;ReadPosRankSum=0.335;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:129,71:0.35:200
chr5	133316707	.	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.451;QD=2.33;ReadPosRankSum=2.135;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr5	133450497	rs173424	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	133450789	rs187491297	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	133451213	rs30491	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	133459347	rs17167273	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	133473635	rs75401751	CT	C	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	133473683	rs73790177	C	A	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=27.15;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	133473697	rs249610	T	C	7265.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=4.019;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.140;QD=26.42;ReadPosRankSum=1.128;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:1,274:1.00:275
chr5	133474591	rs891896	A	G	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr5	133478341	rs152402	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	133478359	rs152401	A	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	133481749	rs73790191	C	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	133509736	rs3815506	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	133509752	rs73791514	A	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	133537438	rs2302598	T	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	133537479	rs2302599	T	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	133541548	rs2239543	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.79;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	133559993	rs56672370	G	A	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	133561589	rs3863186	G	C	12214.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr5	133655029	.	GA	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.749;QD=0.76;ReadPosRankSum=0.389;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr5	133873572	rs329126	A	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	133896744	rs2589404	A	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	133900111	rs329311	A	C	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	133944043	rs201249311	AT	A	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.191;QD=3.73;ReadPosRankSum=1.110;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr5	134007642	rs79675626	T	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	134011834	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.797;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr5	134015276	.	G	GT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.444;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr5	134033777	rs246341	G	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	134039742	rs151247213	TTTTA	T	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	134102812	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	134113558	rs254713	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	134153089	rs7735091	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	134164284	rs34675300	GT	G	320.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=1.656;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr5	134211073	rs73790721	G	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	134235418	rs73790726	G	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr5	134240921	rs6892348	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	134296215	rs73790760	C	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	134344497	rs299376	T	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	134344929	rs299378	C	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	134345259	rs143819145	T	TGGTGCCTGTGTAGAGAGCAGGTGGCCTCAGGCATCTGCAGC	39.19	.	AC=1;AF=0.500;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.19;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:0,1:1.00:1
chr5	134346304	rs877812	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	134364406	rs71660434	TCCGCGC	T	1760.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	134365091	rs474853	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	134368721	rs10716861	CA	C	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	134573448	rs62383169	G	A	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	134724512	rs114993738	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	134782396	rs67187482	T	A	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	134782414	rs12518053	G	T	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	134782443	rs113429044	T	C	10415.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	134782450	rs12520799	T	A	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	134782510	rs12520809	T	C	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr5	134782576	rs1031844	T	G	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr5	134785463	rs73296455	C	T	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	134986256	rs149152270	A	AAAC	1515.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	135170658	rs17738773	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	135170981	rs17738826	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	135178081	rs6596269	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	135178124	rs2304075	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	135178142	rs6596270	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	135186075	rs2304077	A	G	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	135188214	rs2304078	G	C	9100.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	135207382	rs2304080	C	T	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr5	135215575	rs2269926	A	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	135215835	rs71857174	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.012;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr5	135223713	rs9327734	G	T	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	135223798	rs112481078	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	135229633	rs2069882	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	135229940	rs2069881	C	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	135258156	rs115054400	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	135276314	rs40986	C	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	135277394	rs11376205	G	GT	819.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.42;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	135365006	rs4976361	A	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	135379612	rs4976464	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.12;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	135385316	rs17169753	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	135388663	rs1054124	A	G	9405.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr5	135391326	rs6860369	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	135391374	rs1133170	C	T	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	135392426	rs4669	T	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	135396452	rs13168506	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	135396468	rs13188659	T	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	135396669	rs6880837	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	135469527	rs3764941	T	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	135469726	.	TGG	T	693.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	135469737	.	G	T	702.77	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=41.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	135469770	rs3764939	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	135489891	rs10479111	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	135496820	rs11437885	C	CA	884.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.539;QD=12.64;ReadPosRankSum=-0.217;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:13,57:0.81:70
chr5	135496895	rs10563477	TATA	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	135498944	rs11318760	AT	A	4856.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr5	135508381	rs4585442	A	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	135510033	rs4146185	T	A	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	135512916	rs10078857	C	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	135513085	rs55765823	T	TC	5728.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	135522877	rs66932414	AG	A	5148.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.57;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	135522879	rs58669675	T	TAATATA	5147.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.11;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	135527905	rs2287963	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	135528316	rs6868337	C	G	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	135692575	rs2546661	G	A	10763.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr5	135700760	rs11307237	GA	G	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	136328367	rs3777224	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	136448208	rs17170968	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	136476436	rs11309240	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.028;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	136833955	.	C	CCA	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=0.000;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:19,36:0.65:55
chr5	136997803	rs67014134	A	AG,AAG	1009.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;QD=28.05;SOR=1.949;set=HC	GT:AD:AF:DP	1/2:0,14,22:0.39,0.61:36
chr5	137013106	rs2967791	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	137027953	rs2301710	A	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	137028029	rs2905608	T	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	137056027	rs6887727	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	137206489	rs34717730	A	G	11392.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr5	137206560	rs6890689	A	C	9414.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr5	137217636	rs73790080	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	137241856	rs700605	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	137244517	rs1880458	G	A	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	137257288	rs4304074	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	137259179	rs12187140	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	137259251	rs13188503	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	137271968	rs7701617	T	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	137281708	rs1125979	A	C	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr5	137292133	rs3836896	C	CA	3994.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	137295823	rs9327802	T	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr5	137297923	rs4835738	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	137323117	rs7714536	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	137346646	rs35163730	T	TA	34.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=5.71;ReadPosRankSum=-1.383;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr5	137347403	rs12187885	G	A	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	137347498	rs10064910	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	137354851	rs66908638	CA	C	221.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	137372207	rs6596419	A	T	9413.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	137420376	rs4835762	T	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	137454358	rs6878575	C	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	137476416	rs412051	T	C	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	137485292	rs217270	C	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	137506434	rs13155519	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	137507104	rs11303706	TA	T	1000.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.274;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.252;QD=9.91;ReadPosRankSum=-0.102;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:25,76:0.75:101
chr5	137513369	rs10671440	G	GA,GAA	1603.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=8.341;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.597;QD=17.82;ReadPosRankSum=0.232;SOR=0.485;set=HC	GT:AD:AF:DP	1/2:8,30,52:0.33,0.58:90
chr5	137519101	rs116260624	G	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	137589876	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.531;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr5	137717265	rs6865472	G	A	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr5	137780336	rs4835794	T	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	137846155	rs4835685	A	G	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	137847078	.	T	TACAC	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=0.567;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr5	137847092	rs11738208	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=32.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	137892170	rs10117	G	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	137895859	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr5	137896597	rs10652442	A	AT	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.625;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr5	137897589	rs256007	A	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	137902566	rs147421569	GAA	G	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	137902868	rs71574426	GA	G	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	138216625	rs5871683	G	GA	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	138221989	rs288028	G	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	138266546	rs1059110	G	A	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	138356756	rs10077896	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	138356775	rs10077796	C	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	138456667	rs9327839	G	A	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	138456815	rs3088052	T	C	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	138473077	rs11431215	C	CA	3501.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	138655273	.	C	T	204.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	138660881	.	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.095;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr5	138662111	rs34218388	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.956;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr5	138704323	rs71742462	C	CT	218.14	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr5	138713959	rs6596474	A	C	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	138718476	rs11242461	T	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	138718878	rs59914331	C	CA	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=35.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	138720108	rs11242462	C	T	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	138720336	rs6596476	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	138723112	rs138480317	C	CTCCA	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	138723168	.	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.306;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr5	138724126	rs33937093	TG	T	1456.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	138724457	rs9327846	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	138728483	rs10078623	A	G	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	138728533	rs10063870	C	T	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	138775173	rs3923059	T	C	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	138857919	rs1131769	T	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	139060486	rs356445	G	A	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr5	139061109	rs73790943	C	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr5	139061148	rs57638253	CT	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr5	139062379	rs13362306	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	139062399	rs13355248	C	T	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	139213452	rs4912884	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	139216901	rs11440487	A	AG	4386.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	139741785	rs6865864	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	139743582	rs114347809	G	A	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	139745154	rs6860077	T	C	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	139747531	rs74472864	A	G	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	139752474	rs112957633	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	139825598	rs113206514	G	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	139844392	rs79431769	C	T	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	139885537	rs74522468	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	139886634	rs76505219	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	139892331	rs1025488	G	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	139893116	rs113375735	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	139907384	rs140165751	ATACT	A	1075.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	139936680	rs143712554	ACCC	A	21362.73	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:2,479:1.00:481
chr5	139936691	rs201688784	C	G	21821.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:2,502:1.00:504
chr5	139936980	rs250427	A	G	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr5	139937125	rs115037218	G	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	139939874	rs78705938	A	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	139940749	rs77176684	C	G	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr5	139941228	rs250430	A	G	8955.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr5	139941318	rs171632	A	G	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	139941860	rs7734425	A	G	10591.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr5	139941943	rs7715021	C	G	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr5	139942116	rs7704802	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr5	139942241	rs17118922	T	A	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	139942537	rs116175330	A	G	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	140020533	rs116457516	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	140023818	rs753279	C	T	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	140024491	rs702398	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	140027592	.	G	GGTGT	496.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=1.298;QD=23.65;ReadPosRankSum=-1.964;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr5	140039877	.	C	CTTTTTTTTTTTT	94.52	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	140041187	rs115338764	G	A	3867.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=-0.057;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,158:0.98:162
chr5	140044469	rs77110838	C	A	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	140048209	rs2251860	T	C	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	140048267	rs2530245	T	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	140052271	rs2563333	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	140056146	rs11344157	GC	G	5409.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	140062547	rs2530239	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr5	140077699	rs2530234	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	140166953	rs34575154	A	G	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	140167463	rs3733710	C	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	140168070	rs2240696	A	G	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	140168151	rs2240695	G	T	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	140174622	rs9686540	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	140174865	rs11167600	G	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	140180737	rs3806845	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	140181734	rs3733708	A	G	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	140181892	rs3733707	T	C	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	140182101	rs7701755	G	T	3316.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.51;ReadPosRankSum=2.274;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,129:0.99:130
chr5	140183058	rs2240694	G	A	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr5	140186657	rs4151680	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	140187048	rs3822349	G	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	140187102	rs3822347	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	140187201	rs113425597	G	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	140187322	rs3822346	C	T	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	140188383	rs2337987	T	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	140188401	rs2879086	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr5	140188575	rs2879087	G	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	140201264	rs4151682	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	140201420	rs11958868	T	C	6902.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	140202590	rs7716092	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	140202641	rs7715025	G	A	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	140203432	rs4141841	C	T	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	140208753	rs113613407	A	G	11424.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.57;QD=26.26;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr5	140209467	rs7710794	T	G	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	140215956	rs6880234	C	G	13446.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr5	140221047	.	G	C	87	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=24;MQ=51.37;NF=8;NR=2;PP=87;QD=12.1771212547;SC=TCGTGGGCCGGATCGCGCAGG;SbPval=0.87;Source=Platypus;TC=40;TCF=27;TCR=13;TR=10;WE=140221055;WS=140221037;set=Platypus	GT:AD:AF:DP	1/0:30,10:0.25:40
chr5	140222641	rs6580012	A	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	140227991	rs4151688	G	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	140229086	rs251354	C	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=25.78;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	140229316	rs7722927	T	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	140229925	rs58792000	G	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	140230122	rs115218749	G	A	9507.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	140230370	rs369636	AA	CC	10414.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	140250471	rs17844350	G	T	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	140307284	rs155361	G	A	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	140307969	rs246074	C	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	140309016	rs155360	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	140346468	rs155364	T	A	6782.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	140362033	rs116232949	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	140432223	rs2233592	C	T	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	140476782	rs115333775	G	T	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr5	140482483	rs31848	G	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=32.02;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	140517174	rs400562	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	140559891	rs35245446	G	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	140561983	rs2204704	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	140567608	rs11167743	C	T	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	140568034	rs33974901	C	CA	5864.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	140710705	rs2472647	G	A	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	140711097	rs17097185	C	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	140711954	rs116679801	C	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;MQ=59.81;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	140718552	rs6878145	A	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	140718750	rs61749035	G	T	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	140725828	rs7736541	C	T	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	140731159	rs78745319	T	C	21471.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:1,845:1.00:846
chr5	140736814	rs11575951	G	C	18408.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr5	140744777	rs376872993	C	T	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	140745333	rs6882138	C	T	14119.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr5	140750044	rs6860609	T	C	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr5	140751128	rs2240697	C	G	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,251:0.99:253
chr5	140755260	rs112671050	G	C	10814.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	140763029	rs2072315	A	G	10030.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr5	140774288	rs4912749	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	140779662	rs6873830	G	A	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr5	140783596	rs1363448	C	T	7713.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	140789971	rs79498912	G	A	12219.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr5	140793007	rs4912751	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	140793393	rs1363449	C	T	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	140797630	rs2015825	G	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	140857798	rs1423148	T	C	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	140867347	rs1423149	C	T	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr5	140869884	rs2233604	C	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	140898604	rs6878257	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	140953563	rs35249023	TGGA	T	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.924;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:112,14:0.11:126
chr5	140955777	rs2302103	C	T	4712.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.17;ReadPosRankSum=-1.437;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:2,193:0.99:195
chr5	141014494	rs2530223	T	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	141016276	rs32954	T	C	26822.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr5	141016288	rs1421896	T	G	26006.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr5	141019110	rs14251	C	A	6020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=-1.485;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:4,242:0.98:246
chr5	141019881	rs32956	G	C	10428.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr5	141020100	rs41098	C	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	141022113	rs111256073	AAG	A	591.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.476;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr5	141022114	.	AG	A	45.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.076;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr5	141022544	rs702380	A	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	141022786	rs10699129	T	TGGG,TGGGG	1188.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;QD=39.62;SOR=0.922;set=HC	GT:AD:AF:DP	1/2:0,9,21:0.30,0.70:30
chr5	141022848	rs702379	T	C	118.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	141024048	rs469522	A	G	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	141024136	rs469074	T	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr5	141025162	rs456998	G	T	42.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	141026884	rs251177	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	141027399	rs468968	TG	CC	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	141034123	rs6580194	T	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	141034792	.	T	TACACAC,TACAC	416	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=23;MMLQ=18;MQ=57.42;NF=8,8;NR=6,6;PP=416,110;QD=29.9285714286;SC=CCTGATGGCCTACACACACAC;SbPval=0.68;Source=Platypus;TC=24;TCF=13;TCR=11;TR=14,14;WE=141034800;WS=141034782;set=Platypus	GT:AF:DP	0/1:0.58:24
chr5	141035374	rs7715559	G	A	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	141036337	rs7703648	A	G	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	141039190	.	GAGA	G	997.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	141041148	rs6891143	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	141041435	rs3749759	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	141044472	rs2306337	A	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	141049407	rs3763120	G	A	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	141052870	rs440279	G	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	141059649	rs417503	A	G	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	141059868	rs11167756	T	C	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:4,307:0.99:311
chr5	141235896	rs11745262	G	A	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr5	141235916	rs145694332	TGGGAGGTTAGACAAGGGCCC	T	2528.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	141243189	rs75190873	C	T	11391.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr5	141243646	rs3797054	A	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	141247181	.	TA	T	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.857;QD=2.80;ReadPosRankSum=-2.867;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr5	141248963	rs12515587	T	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	141257977	.	AGGC	A	507.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=36.27;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	141303633	rs13183870	C	A	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	141303688	rs13183994	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	141304314	rs6580206	T	A	5862.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.993;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.97;ReadPosRankSum=0.659;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:1,162:0.99:163
chr5	141304327	rs55860016	T	G	2144.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=0.200;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:5,117:0.96:122
chr5	141304328	rs68113458	TG	T	5023.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.157;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.57;ReadPosRankSum=1.718;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:1,117:0.99:118
chr5	141304390	rs13170508	A	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	141307833	rs10036567	T	C	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr5	141307918	rs61402512	G	A	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	141309354	rs6888914	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	141309385	rs6862824	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	141309901	rs7705729	C	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	141312659	.	CAAAAAAAAA	C	187.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	141312988	rs6866889	T	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	141318032	rs17097878	A	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	141318162	rs61739701	G	A	18070.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr5	141318368	rs59478686	C	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	141325249	rs105633	T	C	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr5	141335241	rs164073	A	G	13851.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr5	141336264	rs164075	G	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	141354220	rs187542	G	C	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	141357719	rs66768569	TTGTA	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	141364511	rs252099	A	G	11571.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr5	141364637	rs252100	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	141367202	rs374840	GA	TT	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	141371557	rs143763915	CTTT	C	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.18;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr5	141382584	rs252114	T	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	141391532	rs164080	G	A	8353.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	141975067	rs34003	A	C	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	142254679	rs185200	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	142259083	rs27779	C	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	142273947	rs37216	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	142287159	rs36220244	AAGGGT	A	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	142287517	rs5871829	T	TC	111	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	142311442	rs712176	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	142311509	rs712177	T	C	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	142416741	rs192194	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	142421287	rs34295120	G	GA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=11.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.762;SOR=2.437;set=HC	GT:AD:AF:DP	0/1:56,24:0.30:80
chr5	142421415	rs2270068	T	G	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	142435748	rs6580266	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	142513686	rs246607	A	G	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	142593652	rs258819	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	142601811	.	TACACACACAC	TAC,T	1150.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=36;set=Intersection	GT:AF:DP	1/1:1.00:32
chr5	142661490	rs6196	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	142662280	rs258751	G	A	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	142671092	rs150299999	A	ATTACTTTTCTTTAGCCTAAG	2742.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.79;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	142680344	rs6188	C	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	143059433	rs2042253	T	C	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	143538064	rs115282675	A	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	143853692	rs151242810	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	145176221	rs338898	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	145198805	rs624380	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	145199430	rs11293460	AG	A	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	145246085	rs2569006	T	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	145252574	rs10037373	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	145379762	rs34942619	T	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	145427300	rs80165924	T	C	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	145427527	rs1859895	T	A	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	145439647	rs2962525	T	C	9860.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr5	145512367	rs11321164	TA	T	222.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;MQRankSum=0.588;QD=14.85;ReadPosRankSum=-0.813;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	145515379	rs2963919	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	145522912	rs2962504	A	G	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	145551652	rs78678605	C	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	145631155	rs75623351	T	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	145650963	.	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=0.375;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	145826949	rs79408814	C	A	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	145826954	rs6884478	C	T	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	145851163	rs11391120	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.266;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr5	145890028	rs4705103	A	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	145895246	rs7713676	G	A	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	145969805	rs138432032	C	CAAAGGGAGTGACCGAGTATTACGGAG	3233.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.626;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.195;QD=26.95;ReadPosRankSum=1.179;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:2,118:0.98:120
chr5	145969948	rs373740293	GT	G	55.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	145972746	rs116519070	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	146030055	rs6866598	C	T	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	146077526	rs6879694	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	146434146	rs720305	C	T	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr5	146435163	rs11958187	G	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr5	146619206	rs4705132	G	C	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	146657584	rs6580458	T	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	146657838	rs6580459	G	A	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	146728149	rs10072514	C	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	146775311	rs2288808	A	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr5	146775377	rs2288807	G	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr5	146777177	rs114275423	G	A	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr5	146777188	rs2304045	A	G	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr5	146777447	rs74828553	A	ATAGAAAGAG	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	146778717	rs35381274	C	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	146780459	rs114150549	G	C	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr5	146971253	rs7449194	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	146981164	rs10578483	TCAAAACAAAA	T	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	147207495	rs112569673	T	A	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	147211105	rs35877720	C	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	147286013	rs7722926	A	T	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	147444989	rs9325061	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	147445023	rs1609851	C	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	147445108	rs3036741	TCACACA	T	118	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	147445124	rs1007979	A	G	127.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	147449855	rs1423001	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	147450028	rs3752677	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	147450085	rs3752676	C	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	147468614	rs10038561	A	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	147475386	rs6892205	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	147478654	rs11405253	G	GT	1980.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	147480080	rs2303064	G	A	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	147488367	rs2303071	C	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	147493831	.	C	CTTT	348.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	147493833	rs35043219	C	T	357.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	147493871	rs3815735	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	147497871	rs6891892	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	147516470	rs4334874	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:3,75:0.96:78
chr5	147516598	rs4349706	T	C	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	147516762	rs3088193	C	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	147549163	rs4269285	T	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	147554889	rs10052031	A	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=24.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	147554997	rs147123556	TTTTTTCC	T	2727.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	147555029	rs10074328	C	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	147555153	rs75978170	C	G	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	147649509	rs56306866	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	147649568	rs2304030	G	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	147653852	rs1432687	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	147661581	rs11296930	AT	A	1391.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	147661891	rs144431323	C	CT	63.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=0.674;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	147665421	rs377666874	GA	G	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.16;ReadPosRankSum=0.101;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr5	147692077	rs34113853	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	147692967	rs2303056	G	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	147693202	rs17719662	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	147693600	rs79608039	T	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	147695283	rs3217238	C	CTCA	3319.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:4,132:0.97:136
chr5	147703416	rs1422969	C	T	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	147715820	rs6894032	G	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	147716137	rs6884299	T	A	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	147785802	rs201558003	AT	A	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.004;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr5	147795697	.	A	AT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.310;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr5	147803557	rs11168047	G	T	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	147812901	rs6861078	T	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	147819366	rs10051223	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	147856232	rs6580550	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	147902625	.	TA	T	310.80	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr5	148206375	rs1801704	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	148206473	rs1042714	G	C	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	148206646	rs1042717	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	148206917	rs1042718	C	A	11353.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr5	148207447	rs1042719	G	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	148207633	rs1042720	G	A	2997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;MQRankSum=0.425;QD=24.77;ReadPosRankSum=1.923;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:2,119:0.98:121
chr5	148207667	rs141761380	C	CCG	2379.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;QD=42.50;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	148383345	rs1432798	C	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	148384550	rs201226305	G	GT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.658;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr5	148384559	rs1432799	G	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=29.88;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	148386525	rs6871030	T	G	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	148389763	rs1025476	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	148392362	rs11954893	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr5	148407708	rs1432794	A	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	148407893	rs6875902	C	A	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	148408101	rs1432793	A	G	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr5	148425518	rs250676	A	T	3139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.75;ReadPosRankSum=1.435;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:2,136:0.99:138
chr5	148578566	rs2068262	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	148578636	rs13362048	T	C	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	148580025	rs6580602	G	A	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	148586451	rs5872113	A	AG	737.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	148610089	rs73795947	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	148625972	rs34340554	TA	T	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.53;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	148627054	rs10035236	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	148627252	rs9325136	G	A	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	148629350	rs77653018	A	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	148630191	rs1808828	C	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	148630774	rs74507928	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	148639193	rs9325138	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	148651711	rs12054749	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	148679301	rs171286	C	G	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	148682188	rs352341	G	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	148695647	rs17109947	A	G	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	148808400	rs115606965	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	148884874	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.445;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr5	149006640	rs9324624	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	149112258	rs77374002	G	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	149112300	rs41287082	T	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	149197230	rs251460	T	C	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	149199889	rs32589	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	149200043	rs32588	T	C	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	149212243	rs7732671	G	C	8953.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr5	149283315	rs115072370	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	149283406	rs251346	C	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	149294495	rs75319698	G	A	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	149294595	.	CTT	C	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.422;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr5	149301335	rs11167487	T	C	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	149360877	rs30832	T	C	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	149375720	rs33910807	TC	T	8922.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr5	149379897	rs6579765	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	149380159	rs3812009	G	C	14149.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr5	149386314	rs6872735	G	C	150.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	149390222	rs17110810	G	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	149406271	rs6579767	C	T	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr5	149406733	rs2304069	G	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	149410519	rs2278394	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	149417138	rs6887999	G	T	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	149420180	rs113466054	A	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	149421502	rs2276982	A	G	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	149424966	rs2276983	G	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	149427387	rs2043284	T	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	149428395	rs216125	C	G	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	149428424	rs216126	G	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	149431178	rs7718213	T	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149431223	rs216131	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	149431259	rs216132	A	G	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	149433596	rs2066934	TG	GA	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	149434684	rs41443148	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149437190	rs216138	C	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	149440334	rs11952821	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	149447628	rs216150	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	149447771	rs34928010	G	A	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr5	149450142	rs41428145	A	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	149450258	rs41471445	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	149452793	rs10044553	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	149456811	rs3829987	G	A	24378.77	.	AC=2;AF=1.00;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	1/1:1,957:1.00:958
chr5	149495287	rs2229561	G	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	149497099	rs67730801	GCGCGCGCGCACACA	G	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.06;ReadPosRankSum=1.834;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	149497103	.	GCGCGCACACA	G	296	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=4;MGOF=16;MMLQ=21;MQ=61.27;NF=3;NR=7;PP=296;QD=30.4;SC=GCGCGCGCGCGCGCGCACACA;SbPval=0.7;Source=Platypus;TC=12;TCF=4;TCR=8;TR=10;WE=149497122;WS=149497089;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr5	149504158	rs1075846	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	149509290	rs73277741	C	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr5	149515397	rs17110944	T	A	11511.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:4,459:0.99:463
chr5	149516774	rs67088273	G	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	149546426	rs2302274	A	G	3289.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.37;ReadPosRankSum=-0.785;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:2,133:0.99:135
chr5	149546828	rs2302275	C	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	149578999	rs731376	T	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	149582069	rs10875556	T	C	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	149583175	rs11749558	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	149583300	rs2240793	T	C	17250.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.68;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr5	149583336	rs2240794	T	C	14786.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	149583383	rs59147773	G	GGTGTGTGT	1368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-0.743;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr5	149584230	rs74439059	C	T	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	149584341	rs6878880	T	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	149584863	rs2342283	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149584870	rs4423986	C	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149584881	rs5024534	G	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	149584881	.	GTT	TTC	615	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=2;MGOF=70;MMLQ=24;MQ=60.31;NF=12;NR=3;PP=615;QD=44.5645249908;SC=CCACTTCAGGGTTCGGTACAG;SbPval=0.55;Source=Platypus;TC=16;TCF=13;TCR=3;TR=15;WE=149584891;WS=149584853;set=Platypus	GT:AD:AF:DP	1/1:1,15:0.94:16
chr5	149584883	rs5024533	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	149584969	rs11428067	A	AG	5287.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=36.98;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	149585025	rs4705426	A	C	7849.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.348;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=2.995;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.197;QD=24.68;ReadPosRankSum=-1.699;SOR=0.140;set=HC	GT:AD:AF:DP	1/1:2,316:0.99:318
chr5	149597160	rs882354	A	G	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr5	149597304	rs5872169	G	GT	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	149602221	rs75000324	G	A	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	149602608	rs2241694	A	G	10301.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr5	149610967	.	AAATAATAAT	A	2416.73	.	AC=2;AF=1.00;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr5	149624901	rs149294022	GCCTCCTCCTCCTCCTCCTCCT	G	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149627423	rs7711562	A	G	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	149629683	rs4958452	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	149631413	rs2288799	A	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	149632955	rs7701427	C	T	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	149636073	rs10463293	T	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	149636109	rs10463294	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	149644597	rs891938	T	G	11854.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr5	149677851	rs6579784	A	G	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	149737221	rs4565199	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149754820	rs73270845	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	149763262	rs11950303	G	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	149792109	rs7709772	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	149823785	rs2070844	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	149824067	rs2073472	T	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr5	149824223	rs2070842	T	C	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr5	149824308	rs36146597	G	GC	2801.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=36.39;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	149824355	rs13171800	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	149826526	rs4841	C	T	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	149826572	rs13183077	G	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	149914401	rs2545341	T	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	149914631	rs2909809	G	A	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	149919739	rs1290147	G	C	7467.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	150028134	rs145720408	C	T	22227.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:1,860:1.00:861
chr5	150051958	rs194134	T	C	15592.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr5	150072693	rs33410	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	150099218	rs373931056	C	T	8931.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr5	150138378	rs201128894	G	GC	12380.73	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:18,451:0.96:469
chr5	150174892	rs67669533	T	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	150174959	rs73282209	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	150227615	rs9637870	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	150227998	rs10065172	C	T	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	150257391	rs1428555	C	T	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	150257616	rs1428554	A	G	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	150257627	rs1428553	G	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	150282674	rs111355487	A	AT	681.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,47:0.77:61
chr5	150311622	rs12656542	A	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	150311678	rs11167525	A	G	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	150311773	rs7727919	T	C	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.24;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	150311857	rs10719367	CT	C	3541.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	150311872	rs12656600	A	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	150323428	rs17800987	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	150323530	rs112582282	GTGGGAGAAGGTCGTGA	G	1812.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	150400254	rs8177413	G	C	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	150400587	rs870407	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	150444388	rs2233284	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	150484889	rs868531	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	150489390	rs1133202	A	G	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	150498981	rs2303022	C	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	150499080	rs2303023	T	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	150499102	rs2303024	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	150503784	rs2303027	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	150504097	rs56708608	TGAGAGAGAGA	T	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=39.94;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	150506104	rs374776803	AAC	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.002;QD=2.49;ReadPosRankSum=0.085;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr5	150518358	rs3213802	A	G	8943.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	150518358	.	AG	GA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=24;MQ=60.0;NF=50;NR=61;PP=2947;QD=20;SC=AGGTCCTGGCAGGTGGGGAAG;SbPval=0.49;Source=Platypus;TC=114;TCF=50;TCR=64;TR=111;WE=150518367;WS=150518348;set=Platypus	GT:AD:AF:DP	1/1:3,111:0.97:114
chr5	150518359	rs3213803	G	A	8943.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	150518392	rs144973641	G	GGAA	4693.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr5	150518435	rs3213804	T	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	150518725	rs45534934	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	150518892	rs3214444	GC	G	6550.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	150518988	rs2228458	G	A	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	150562696	rs60344552	CT	C	13899.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	150565770	rs193728	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	150567049	rs35221501	CA	C	4184.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	150578574	rs3734038	A	G	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	150603444	rs248461	C	G	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr5	150639409	rs153477	A	G	10832.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr5	150639439	rs153478	A	G	11367.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr5	150646888	rs61740602	T	C	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr5	150647239	rs989	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	150722974	rs111787238	A	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	150838284	rs35256722	C	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=2.655;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	150838293	rs35074529	T	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.95;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	150838603	rs56026426	A	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	150843996	rs415426	T	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	150848653	rs10709981	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=3.424;QD=0.72;ReadPosRankSum=-0.510;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr5	150886616	rs7723079	G	A	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	150886725	rs7723266	G	A	9872.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:1,382:1.00:383
chr5	150887184	rs75548276	G	GAGA	4637.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr5	150887200	rs41290577	A	G	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr5	150891663	rs6862750	T	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	150891733	rs2304028	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	150901111	rs3822699	A	G	20329.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:2,797:1.00:799
chr5	150901261	rs6650971	C	T	11629.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr5	150901300	rs3734046	G	A	13800.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr5	150901597	rs3734047	G	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	150901613	rs2053028	A	G	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	150901630	rs3734049	G	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	150905398	rs3734051	C	T	8826.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	150907819	rs11743288	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	150908813	rs2304024	G	A	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	150914184	rs1432643	A	T	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	150921805	rs6579879	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	150923405	rs6892335	A	G	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	150925144	rs3797875	A	G	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	150942919	rs6872614	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	151049404	rs7719521	A	C	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	151052659	rs1978707	G	A	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	151180451	.	A	AT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.152;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr5	151771817	rs1363422	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	152873649	rs17515380	A	G	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	153029852	rs35033669	ACTGT	A	2774.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	153085668	rs140268951	T	TTTTGTTTGTTTG	925.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	153144216	rs3813470	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	153372525	rs1057772	G	A	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	153372743	rs6866471	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	153382072	rs35082504	GTCT	G	413.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	153406644	rs9324765	C	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	153406987	rs6889563	G	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	153413390	rs2578377	C	T	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	153414545	rs34907432	C	CA	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr5	153429459	rs690592	T	C	6306.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=19.292;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.02;ReadPosRankSum=1.488;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:6,268:0.98:274
chr5	153432450	rs11451300	A	AT	2358.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:5,116:0.96:121
chr5	153432733	rs2578386	T	C	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	153432970	rs2255493	C	T	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	153570349	rs201222592	C	CCGGGCGGA	308.75	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=61.75;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	153674536	.	TTG	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.555;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr5	153795274	rs11321246	TA	T	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	154065382	rs33982250	TA	T	828.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-3.071;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:22,55:0.71:77
chr5	154065383	rs75538180	A	T	82.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.973;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr5	154065495	rs11958012	GG	AC	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	154134818	rs11416035	C	CG	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	154193735	rs863649	A	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	154247297	rs35471086	TAA	T	2144.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	154268902	rs816739	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	154271391	rs702743	A	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	154271948	rs816736	G	A	10177.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr5	154278888	rs816740	C	T	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	154282551	rs10515726	T	C	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	154287016	rs76813157	T	TGAAAAAAAA	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	154287115	rs6580119	T	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	154291219	rs6580121	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	154291409	rs1974777	C	T	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	154291496	rs1974776	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	154296795	rs348735	A	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	154300940	rs348739	A	C	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	154306972	rs2258437	T	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	154308282	rs2644743	C	T	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	154308307	rs1035368	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	154311235	rs2644744	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	154311576	rs2544866	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	154395158	rs6580126	G	T	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.33;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	155771773	rs4434364	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	155820716	rs10475703	C	A	7806.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	156074654	rs141437738	TAAATTGA	T	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	156277759	rs144090458	C	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	156376703	rs6873053	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	156381370	rs7724832	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	156390297	rs6882076	T	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	156464212	rs4704837	T	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	156479323	rs1553318	G	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	156479424	rs1553317	A	C	14570.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.97;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr5	156479424	.	AGT	CGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=25;MMLQ=24;MQ=60.07;NF=114;NR=68;PP=2947;QD=20;SC=AGGTAGAGACAGTTGTTGTCA;SbPval=0.49;Source=Platypus;TC=185;TCF=117;TCR=68;TR=182;WE=156479434;WS=156479414;set=Platypus	GT:AD:AF:DP	1/1:3,182:0.98:185
chr5	156479426	rs12522248	T	C	14570.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.70;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr5	156479509	rs1553316	A	G	17164.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr5	156479568	rs139041445	C	CGTT	24379.73	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr5	156482099	rs2270925	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	156482099	.	TTA	CTT	469	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=9;NR=3;PP=469;QD=43.5389895719;SC=GAACAAGAGTTTATTTAAAAA;SbPval=0.49;Source=Platypus;TC=14;TCF=11;TCR=3;TR=12;WE=156482109;WS=156482089;set=Platypus	GT:AD:AF:DP	1/1:2,12:0.86:14
chr5	156482101	rs2270924	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	156482459	rs1809941	G	T	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	156522588	rs13170556	T	C	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	156531561	rs2902306	C	T	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	156531736	rs1036199	C	A	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	156531865	rs1036200	A	G	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	156589399	rs2278385	G	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	156640563	rs143962660	C	CT	808.74	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:7,44:0.86:51
chr5	156644775	rs5872504	T	TC	2589.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	156644939	rs246747	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	156721863	rs5872508	T	TC	8193.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	156721986	rs7724099	C	A	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	156723913	rs1600014	T	C	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	156734632	rs529619	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	156734644	rs144622623	G	GGTGTGTGTGT	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.55;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	156738830	rs393178	G	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr5	156749860	rs143886830	TTC	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.598;QD=0.67;ReadPosRankSum=2.031;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:79,12:0.13:91
chr5	156750834	rs34143712	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.648;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr5	156751133	rs140803052	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	156811443	rs10063413	G	A	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	156811612	rs10078836	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr5	156887133	rs1105282	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	156890399	rs76634949	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	156898690	rs6860507	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	156898874	rs10476050	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	156898899	rs4704869	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	156899290	rs9313607	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	156899869	rs4704870	T	C	20020.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr5	156900047	rs9313608	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	156908653	rs11134767	C	T	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	156916037	rs10674185	C	CAAAAAGAA	1941.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	156917340	rs10067096	A	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	156921651	rs11466784	G	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	156926777	rs12522418	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=33.20;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	156926781	.	CT	C	756.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=34.40;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	156936364	rs1422795	T	C	2435.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.380;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.658;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr5	156936549	rs1422794	G	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	156946049	rs2042247	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	156957741	rs3822696	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	156991508	rs11134819	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	156997785	rs11746737	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	157002552	rs6556092	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	157002695	rs11465228	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	157075943	rs72284585	TAC	T	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	157078475	rs3749797	C	G	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	157094771	rs36105993	TAC	T	2667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=6.523;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=21.17;ReadPosRankSum=-1.136;SOR=2.076;set=HC	GT:AD:AF:DP	0/1:26,100:0.79:126
chr5	157094777	rs11953619	C	T	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr5	157098756	rs11740603	G	T	17864.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,684:1.00:684
chr5	157102185	rs6884959	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	157106785	rs6556177	C	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	157106968	rs6892478	C	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	157164889	rs2270813	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	157164962	rs2270812	T	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	157178592	rs56398160	TA	T	1767.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	157180930	rs35074350	CT	C	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr5	157180959	rs141155397	AAAT	A	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	158140222	rs3734105	G	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	158511794	.	G	GA	1160.73	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:21,72:0.77:93
chr5	158522577	rs12659540	C	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	158523584	rs6556385	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	158526534	rs5872586	TA	T	1316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=61.41;MQRankSum=2.434;QD=11.45;ReadPosRankSum=-1.862;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:19,96:0.83:115
chr5	158588633	rs139682876	GAAAAA	G	2615.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=42.19;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	158603571	rs1473247	T	C	1903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.654;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=-1.135;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,77:0.99:78
chr5	158750013	rs2288831	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159344083	rs2229181	C	T	12857.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr5	159344446	rs3730284	C	T	8094.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr5	159640652	rs6556482	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	159659273	rs1130435	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	159661723	rs2421775	C	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	159665523	rs10071756	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.69;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	159665527	rs10056227	G	A	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.14;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	159665534	rs10079413	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.20;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	159665599	rs2277954	G	A	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	159665726	rs10071871	C	T	9325.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	159665733	rs2277953	C	T	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	159766379	rs13360090	C	A	453.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	159766380	rs61666605	A	AC	444.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	159820931	rs10515808	C	A	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr5	159839530	.	T	TA	355.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.138;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr5	159841493	rs79791419	A	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-1.241;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	159849586	rs1895320	A	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	159851211	rs2910203	G	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	159912418	rs2910164	C	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	160043071	rs4921308	C	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	160043108	rs113179038	A	AT	715.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	160043109	rs17052845	C	T	724.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	160044855	rs1363199	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	160047265	rs6862674	C	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	160049355	rs2032804	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	160097429	rs3828604	T	C	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	160097453	rs1990888	A	C	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	160097496	rs958912	A	G	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr5	160097632	rs958911	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	160763821	.	CA	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-1.577;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:154,39:0.20:193
chr5	160973808	rs370064343	TA	T	201.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.707;QD=13.45;ReadPosRankSum=-0.481;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr5	161116903	rs4921402	C	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	161119071	rs12522663	G	T	8582.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr5	161119125	rs13184586	C	G	8765.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr5	161128761	rs4277944	C	G	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	161322889	rs2279020	G	A	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	161494990	.	GA	G	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.427;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr5	161529571	rs211035	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	162890953	rs380101	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	162891894	rs3756648	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	162911075	rs2230363	C	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	162938940	rs11307015	GT	G	1126.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	162940739	rs964945	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	162944709	rs7733775	A	G	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	162945387	rs200442777	CT	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.013;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr5	167182055	rs1862875	G	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	167303317	rs1862198	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	167489049	rs72549552	CT	C	159.27	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:2,12:0.86:14
chr5	167566600	rs1432822	T	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	167576239	rs10040595	A	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	167622107	rs1472355	G	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	167674370	rs3733988	C	T	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	167675392	rs12189266	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	167798585	rs2287703	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	167835539	rs17551608	C	T	9909.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr5	167835766	rs6887919	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	167836809	rs73392739	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	167837017	rs113311252	TA	T	6031.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=38.66;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	167837104	rs17070132	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	167837202	rs888888	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	167855197	rs7735281	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr5	167858462	rs376809293	TCTGGCTGG	T	2429.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:5,91:0.95:96
chr5	167868779	rs3733981	A	G	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	167868809	rs3733980	C	T	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	167868930	rs3948557	G	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	167891668	rs62384143	G	A	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	167891830	rs3203960	T	C	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	167913510	rs244903	G	A	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr5	167913603	rs193466	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	167913661	rs35439881	CAG	C	1151.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	167919623	rs184957	T	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	167921047	rs2432642	C	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	167933673	rs34318878	C	CT	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:4,31:0.89:35
chr5	167943827	rs653568	G	A	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	167945076	.	CTTT	C	150.79	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	167956362	rs1870053	C	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	168098463	rs292486	A	G	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	168100285	.	T	A	6369.77	.	AC=2;AF=1.00;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	168212687	rs2292141	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	168212951	rs891921	A	G	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	168233413	rs3797716	G	A	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr5	168233474	rs3797715	G	A	15989.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,615:1.00:616
chr5	168244506	rs35712765	G	GA	2947.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	168250350	rs924875	C	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	168250429	rs1875977	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	168690612	rs62376934	A	G	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	169096207	rs139378784	T	TAAAAC	1139.74	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:2,27:0.93:29
chr5	169097474	rs2306564	G	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	169097505	rs111473735	T	TTTTTA	2812.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:4,67:0.94:71
chr5	169097940	rs2306565	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	169101599	rs2244445	C	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	169126349	rs2306562	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	169127097	rs2112703	C	A	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	169127270	rs2161405	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.14;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	169127276	rs264845	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	169129284	rs2306560	G	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	169129495	rs3816764	G	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	169267589	rs72231023	CGAT	C	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr5	169422920	rs2059110	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	169496051	rs6868503	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	169504743	rs1045168	T	C	15085.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:2,575:1.00:577
chr5	169535522	rs10063424	T	C	16039.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr5	169675693	rs80044664	AT	A	5599.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	169679354	rs1546451	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	169679947	rs6880961	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	169689604	rs395407	G	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	169702390	rs2271146	C	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	169910084	rs4867968	G	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	170145584	rs6555913	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	170149573	rs2277952	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	170149674	rs12514966	A	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr5	170159997	rs17650650	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	170160749	rs4868018	G	A	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	170162666	rs1363712	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	170221379	rs34296291	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.693;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr5	170395885	rs2446049	T	C	96.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	170395894	.	A	G	62.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	170640827	rs4867648	C	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	170692954	rs957778	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	170720755	rs2914330	T	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	170837457	rs55876025	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	170847555	rs6555955	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	171200659	rs27947	T	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	171200997	rs26400	C	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	171201013	rs113923411	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	171217371	rs11950253	G	A	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	171424137	rs72835288	T	G	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	171472417	rs4867662	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	171472575	rs4868136	G	A	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	171480055	rs4569891	G	A	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	171523436	rs4868141	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	171533629	rs2306963	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	171533656	rs2306962	C	T	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	171554473	rs2279514	G	A	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	171583610	rs41275267	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr5	171583809	rs2306960	C	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	171621408	rs35441810	A	ATT	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;QD=34.69;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	171621430	rs6862632	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=41.83;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	171621440	rs6862640	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=40.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	171627701	rs17074425	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.277;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	171627773	rs2306959	G	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	171630194	rs76175819	C	CTTT	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	171630202	rs199722799	CCCA	C	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	171760544	rs35951290	TA	T	717.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.22;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	171760546	rs3204110	A	T	726.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	171760569	rs12033	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	171785892	rs2569232	A	G	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	171800897	rs2731717	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	171808930	rs2731722	C	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	171849289	rs6873315	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	171849471	rs17074773	G	A	9849.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr5	172096768	rs10476046	C	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	172097353	rs6556037	C	T	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	172113074	rs17075071	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	172196711	rs2431663	G	T	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	172261462	rs35566639	G	A	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	172261489	rs35768025	C	A	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	172261538	rs78078909	C	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	172261583	rs111773832	GC	G	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr5	172294194	rs793027	G	T	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr5	172315872	rs4868227	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.47;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	172324128	rs13154777	A	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	172336616	rs2302957	C	T	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr5	172341917	rs17716949	T	C	11982.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,471:1.00:473
chr5	172342029	rs35941893	G	GT	5765.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	172351160	rs2302958	G	A	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	172385267	rs34217217	C	CA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.260;QD=2.81;ReadPosRankSum=-0.909;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr5	172395664	rs11749686	T	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	172396394	rs505788	C	T	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	172518112	rs34710345	A	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	172539241	rs56040814	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	172550204	rs1129146	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	172561292	.	TAC	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.07;ReadPosRankSum=1.068;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	172573767	rs29798	T	C	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	172578549	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.622;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr5	172660523	rs3095871	T	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.368;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr5	172662024	rs2277923	T	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	172745303	.	G	GAGAGAGAGAGAGAGA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.660;QD=22.16;ReadPosRankSum=-1.169;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	173035493	rs258860	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	173316729	rs359467	G	A	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr5	173378963	rs73808320	A	T	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	173378994	.	G	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=152.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.498;SOR=7.475;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr5	173378996	.	T	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=146.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.399;SOR=7.475;set=HC	GT:AD:AF:DP	0/1:57,41:0.42:98
chr5	173380346	rs969518	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	173491267	rs73806549	G	A	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	173527846	rs6881757	T	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	173534877	rs4457100	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	174152100	rs2048152	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	174156168	rs4242182	T	C	12875.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr5	174178514	rs184329990	C	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	174178535	rs1108172	T	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	174178896	rs11749398	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	174868700	rs686	G	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	174868840	rs155417	T	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	174870150	rs4532	C	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	174919183	rs17065105	A	G	9392.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	174935916	rs2662168	A	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	174937193	rs2662170	C	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	174939078	rs116292632	A	G	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	174939214	rs925197	C	T	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	174949652	rs35822721	C	CT	104.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	174953743	rs198039	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	175112323	rs7730099	G	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	175112328	rs76827388	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	175112330	rs7729715	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	175112620	rs74825180	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	175353627	rs2161153	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.08;QD=26.58;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	175387139	rs79720333	C	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.49;QD=23.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	175388454	rs201670220	C	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.85;QD=24.83;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	175394887	rs370983527	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	175523645	rs200150138	GC	G	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-6.865;QD=5.79;ReadPosRankSum=0.427;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr5	175530166	rs146119027	G	C	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.49;MQRankSum=-5.238;QD=7.88;ReadPosRankSum=-1.957;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:87,64:0.42:151
chr5	175530214	rs200276266	C	T	3984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.351;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=47.81;MQRankSum=-5.929;QD=7.66;ReadPosRankSum=-0.393;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:297,223:0.43:520
chr5	175665427	rs70991519	G	GC	60.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.98;QD=20.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	175721967	.	CAA	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.128;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr5	175722352	rs142740776	CTAACCGT	C	2954.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	175798945	rs10214381	A	C	9162.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:5,350:0.99:355
chr5	175811094	rs56989856	C	CGT	13587.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr5	175824778	rs56370633	G	A	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	175843461	rs33956988	CG	C	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	175915835	rs2963667	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	175923431	rs2963670	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	175927262	rs377249587	CAG	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.488;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:71,11:0.13:82
chr5	175933691	rs113700453	TGTGTGTGC	T	1093.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	175934026	rs71713898	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.925;SOR=1.728;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr5	175956271	rs890835	A	C	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	175956516	rs2241585	G	A	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	175992370	rs114786529	T	C	7930.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	175994125	rs12656372	A	G	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	175994173	rs11392917	C	CT,CTT	720.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.89;MQRankSum=-0.662;QD=11.62;ReadPosRankSum=1.383;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:13,29,20:0.47,0.32:62
chr5	175995857	rs76514370	G	C	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	176002542	rs41275281	C	T	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	176002707	rs3762970	C	T	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	176004312	rs11749537	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	176004476	rs11134982	T	C	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	176005184	rs1565151	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	176005477	rs2358747	C	T	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	176025938	rs6556276	T	C	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr5	176053336	rs72322414	GGTGT	G,GGT	1640.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.78;ReadPosRankSum=0.183;SOR=0.362;set=HC	GT:AD:AF:DP	1/2:1,9,47:0.16,0.82:57
chr5	176056529	rs4868669	A	G	21849.77	.	AC=2;AF=1.00;AN=2;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,857:1.00:857
chr5	176069623	rs55652220	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	176069831	rs901740	G	A	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	176069866	rs112646659	C	G,CCG	473.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:0,7,7:0.50,0.50:14
chr5	176070004	rs13176195	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	176081856	rs13183320	A	G	8184.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176083028	rs78677496	C	T	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr5	176083175	rs6878977	T	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	176084419	rs78621430	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	176291728	rs56388407	G	A	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	176295978	rs10053563	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr5	176296926	rs57241185	G	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	176301588	rs58009835	C	T	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	176304399	rs2304517	A	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	176318430	rs61739890	C	T	8722.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr5	176323298	rs691141	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	176333126	rs2292256	C	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	176334195	rs2292255	C	T	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	176338138	.	AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG	A	4407.73	.	AC=2;AF=1.00;AN=2;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.74;QD=41.58;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	176378574	rs365132	G	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	176402401	rs1700490	G	A	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	176471286	rs11448853	A	AG	557.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	176471591	rs149307	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	176516953	rs434434	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	176517136	rs59390048	C	CGT,CGTGT	1367.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/2:0.17,0.75:40
chr5	176517170	rs387598	G	A	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	176517292	rs442856	A	G	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	176517326	rs422421	T	C	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	176517797	rs376618	C	T	23268.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,879:1.00:879
chr5	176518784	rs452885	C	T	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	176519287	rs393923	G	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	176520378	.	C	T	14243.77	.	AC=2;AF=1.00;AN=2;DP=562;set=Intersection	GT:AD:AF:DP	1/1:1,545:1.00:546
chr5	176523562	rs31777	C	A	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr5	176630984	rs7721671	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	176639217	rs35159794	T	TA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.149;QD=2.72;ReadPosRankSum=-1.233;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr5	176639304	rs6556305	C	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	176684229	rs373383515	CTT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.860;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr5	176700885	rs12660023	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	176721198	rs28580074	T	C	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	176729736	.	ACC	A,AC	14215.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=664;set=Intersection	GT:AF:DP	1/2:0.31,0.65:589
chr5	176731452	rs28362590	G	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	176733116	rs4631	A	G	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	176733616	rs9834	T	C	9964.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr5	176734150	rs4246814	T	G	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	176737720	rs13190036	A	G	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	176759344	rs6878134	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	176761535	rs11738681	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	176765395	rs11748912	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	176793584	rs142008831	TCTGGCCCTGTCTGTCTGG	T	3251.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	176798040	rs56235845	T	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.78;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	176798068	.	GC	G	1983.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	176798074	.	C	G	1850.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.02;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	176798081	.	CG	C	1211.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=44.88;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	176798099	.	CG	C	833.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.41;QD=39.70;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	176830433	rs79281364	G	A	8030.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	176831826	rs17876030	C	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	176831980	rs17876029	T	C	12273.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=1.634;SOR=0.401;set=HC	GT:AD:AF:DP	1/1:1,476:1.00:477
chr5	176884903	rs111482145	G	T	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr5	176885178	rs28538572	A	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	176895817	rs446104	GC	AA	9184.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	176916516	rs335462	C	T	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr5	176917078	rs734825	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	176930135	rs28376231	G	A	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	176930171	rs138153794	AGAG	A	11228.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	176935215	rs55761704	GC	G	1065.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	176936650	rs28565502	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	176938681	rs28695578	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	176939688	rs28544348	C	T	9112.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	176939735	rs335436	A	G	10199.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr5	176940274	rs335437	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	176940384	rs335438	G	A	14594.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:1,567:1.00:568
chr5	176940871	rs335439	G	C	6672.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	176950794	rs28723606	A	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	176950879	rs28688891	T	C	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	176951276	rs337382	A	G	7863.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176963349	rs335460	G	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	177019688	rs4607363	G	C	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:9,288:0.97:297
chr5	177022428	rs11545868	C	T	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:4,217:0.98:221
chr5	177031348	rs11537644	T	C	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	177031602	rs28499092	C	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	177031954	rs28742937	A	G	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	177031967	rs28698736	T	C	10637.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	177036043	rs6600953	A	G	8855.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	177053334	rs5013573	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	177054649	rs10585103	AT	A	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.426;QD=10.31;ReadPosRankSum=0.162;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,37:0.82:45
chr5	177054672	rs7728458	T	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	177059760	rs150057830	T	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.18;QD=43.94;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	177059760	.	TAG	GAA	2642	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=27;MQ=47.38;NF=25;NR=46;PP=2642;QD=20;SC=ATTGTGTGAATAGAAGAGGTC;SbPval=0.52;Source=Platypus;TC=72;TCF=25;TCR=47;TR=71;WE=177059770;WS=177059750;set=Platypus	GT:AD:AF:DP	1/1:1,71:0.99:72
chr5	177059762	rs145429332	G	A	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.71;QD=45.20;SOR=1.279;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	177099259	.	AC	A	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=2.000;QD=14.64;ReadPosRankSum=1.041;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	177151329	rs141664226	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.27;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177161891	rs140979906	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.96;QD=28.87;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	177161950	rs201456502	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.08;QD=27.83;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	177161998	rs200182580	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	177167788	rs200149909	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.61;QD=25.62;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	177180012	rs199881665	G	A	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.11;QD=30.38;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	177180236	rs76556918	G	A	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	177302646	.	T	C	69.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.20;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177305797	rs201185054	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	177310717	rs139876295	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.72;QD=27.98;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	177344152	rs76284623	G	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.72;QD=24.66;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	177348037	.	C	CTTTG	1708.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.69;MQRankSum=-0.380;QD=39.74;ReadPosRankSum=-0.491;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr5	177348098	rs4958970	G	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=42.94;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	177348106	rs4958971	A	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.15;QD=44.31;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	177348150	rs4958972	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.11;QD=43.94;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	177348155	rs4958973	A	G	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.19;QD=45.07;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	177422876	rs7445271	T	C	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	177422908	rs1135320	A	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	177483002	.	AAG	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=4.807;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-9.557;QD=1.14;ReadPosRankSum=0.372;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:134,10:0.07:144
chr5	177483029	.	T	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-11.104;QD=1.60;ReadPosRankSum=0.637;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:151,18:0.11:169
chr5	177483035	.	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-11.274;QD=1.41;ReadPosRankSum=1.478;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:156,18:0.10:174
chr5	177483055	.	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-11.166;QD=1.17;ReadPosRankSum=3.237;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:166,18:0.10:184
chr5	177483076	rs112440703	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-12.933;QD=1.14;ReadPosRankSum=0.960;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:169,18:0.10:187
chr5	177483087	rs113452280	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-12.579;QD=1.32;ReadPosRankSum=-1.109;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:159,18:0.10:177
chr5	177483112	.	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-11.150;QD=0.64;ReadPosRankSum=-2.466;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:139,10:0.07:149
chr5	177483154	rs9687038	T	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	177547247	rs7719667	T	C	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	177548085	rs7712666	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	177562183	rs72536798	C	CTG	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	177562251	rs10060446	G	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=25.00;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177565520	rs10657977	T	TTGTGTG	470.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=42.79;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	177570759	rs6601218	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	177574901	rs7380934	C	G	14493.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr5	177575065	rs114802481	G	A	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	177612634	rs7715618	A	C	86.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	177612734	rs7720480	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.27;QD=44.88;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	177612744	rs7715796	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.66;QD=40.43;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	177613123	rs10479619	T	C	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr5	177614183	rs2913783	T	C	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	177614387	rs6886332	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=40.13;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	177614401	rs11960863	C	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.22;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177633116	rs3812089	A	G	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	177634401	rs7705458	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	177658883	rs2973729	C	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	177658896	rs3749810	A	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	177668882	rs2241581	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	177668965	rs2241580	C	T	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	177669413	rs2241579	T	G	11057.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr5	177673153	rs35716676	AGTGCAGGGACCCAGTGAG	A	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	177673346	rs78904170	G	A	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	177674431	rs3812092	G	A	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	177674995	rs11746830	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	177676986	rs5873601	GCA	G	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	177682866	rs146369708	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	177683029	rs890804	C	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	177683185	rs890803	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	177683377	rs890802	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	177686815	rs2973747	C	A	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	177689094	rs35590898	GGC	G	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	177689398	rs59092383	C	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	178035585	rs501721	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	178040420	rs371797215	AAAAT	A	642.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	178040919	rs560842	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	178045847	rs114909635	T	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	178047536	rs72529437	GGACAGGGTA	G	2785.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	178153334	.	C	A	1307.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	178288214	rs112879314	C	G	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	178293785	rs142474640	T	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	178293873	rs11948690	C	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	178293937	rs11955047	G	A	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	178293943	rs11952790	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	178294059	rs11952817	TG	CA	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr5	178310446	rs4130052	C	T	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	178359643	rs77723700	C	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=24.40;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	178391902	rs12719860	A	C	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	178395850	rs11741688	G	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	178396742	rs4700759	G	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	178401552	rs4700991	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	178402708	rs115719980	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	178403196	rs112056595	A	G	13600.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:2,525:1.00:527
chr5	178404573	.	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.438;QD=2.40;ReadPosRankSum=0.929;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr5	178407031	rs111944266	GAGA	G	7259.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	178407292	rs2856351	C	T	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	178408783	rs61731185	C	T	9612.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr5	178410632	rs112147360	C	T	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr5	178410646	rs79769143	C	G	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr5	178410738	rs903988	C	T	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	178410853	rs151099928	A	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	178411100	rs114379370	A	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	178411180	.	G	GA	920.73	.	AC=2;AF=1.00;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr5	178411315	rs2645341	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	178411443	rs150075678	C	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.83;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	178411447	rs138380985	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	178412273	rs35715923	T	C	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	178412430	rs144784900	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	178412592	rs6880010	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	178412625	rs150382113	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	178413816	rs2256966	T	C	12190.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr5	178413947	rs11746675	T	C	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	178414565	rs2645340	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	178415937	rs2067011	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	178415982	rs4701014	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	178416063	rs2645339	G	A	8926.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	178416203	rs143495088	CCCCTCCCCA	C	9147.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	178416288	rs2071246	G	A	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	178419279	rs11283410	G	GGGCAAGGTCT	5679.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	178419288	rs2645335	C	T	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	178419396	rs11449973	A	AC	7306.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.63;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	178421351	rs2645330	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	178421770	rs2645329	T	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	178452211	.	C	CT	140.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=1.235;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	178507069	rs1445846	T	C	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	178507090	rs1445845	G	A	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	178552956	rs2303642	T	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	178553185	rs2303643	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	178559411	rs3822594	C	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	178564971	rs9286045	C	T	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	178565052	rs9286046	C	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	178579119	rs2303637	C	G	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr5	178581977	rs4700784	G	A	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	178607999	rs10054642	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr5	178634619	rs423552	C	T	16177.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr5	178949558	rs137998943	T	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.64;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	178949560	rs28413987	AG	GT	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.64;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	178949580	rs71596435	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.64;QD=53.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	178950207	rs142217072	A	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-1.688;QD=8.99;ReadPosRankSum=0.246;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr5	178950263	rs34793499	GA	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.16;MQRankSum=-3.334;QD=7.73;ReadPosRankSum=-0.823;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr5	178950400	.	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.63;QD=26.64;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	178950509	rs28571276	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	178951351	rs145029017	A	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.38;QD=30.45;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	178951365	rs138816614	C	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	178951598	rs4701188	G	A	21462.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.95;QD=26.37;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,814:1.00:814
chr5	178977537	.	C	CCGCCCGCCCGCCCGCCCCCACCCCG	231.82	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.77;QD=115.91;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	178986987	rs12658664	C	T	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	178989386	rs28611242	A	G	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	178989473	rs28510162	T	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	178996435	rs11743261	A	G	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:3,162:0.98:165
chr5	179012968	rs13361148	A	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	179021761	.	CAAAAAAAAAAA	C	2816.73	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr5	179021982	rs28685239	G	A	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	179025550	rs4701136	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	179025814	rs73336111	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	179032755	rs6877888	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	179036357	rs7448707	G	A	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr5	179041786	.	A	AG	91.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.06;ReadPosRankSum=0.522;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	179043041	rs4256313	C	G	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	179043075	rs4515257	T	C	7919.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	179045142	rs4701143	G	A	10186.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr5	179049138	rs4301193	C	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	179049934	.	GCCCGGCCCGGCCCGC	G	854.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=42.74;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	179050188	rs1136267	A	C	9892.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr5	179069309	rs6887611	G	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	179069413	rs374415765	A	G	815.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.996;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.208;MLEAC=2;MLEAF=1.000;MQ=43.30;MQRankSum=-3.511;QD=23.99;ReadPosRankSum=-2.045;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:4,30:0.88:34
chr5	179069468	rs62405726	A	G	4950.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.95;MQRankSum=-3.467;QD=24.39;ReadPosRankSum=-0.983;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:4,199:0.98:203
chr5	179071629	rs199764762	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.47;QD=30.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	179071866	rs4990390	A	G	10039.77	.	AC=1;AF=0.500;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	0/1:558,510:0.48:1068
chr5	179071925	rs141003025	G	A	14362.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:513,444:0.46:957
chr5	179071947	rs4645306	A	G	11827.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:411,305:0.43:716
chr5	179071958	rs7731123	C	G	9461.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:366,242:0.40:608
chr5	179072006	rs13153811	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:167,63:0.27:230
chr5	179072040	rs4557391	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:62,17:0.22:79
chr5	179078671	.	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.80;QD=29.31;SOR=2.275;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	179078940	rs6882398	T	C	17153.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr5	179079288	rs62405731	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:638,157:0.20:795
chr5	179079460	rs62405733	C	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.041;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=15.643;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-15.649;QD=2.15;ReadPosRankSum=-1.112;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:260,59:0.18:319
chr5	179105533	rs75628693	G	C	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	179105675	rs78613293	G	C	10002.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	179108039	rs76218121	C	G	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	179126248	rs112694584	G	T	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	179126265	rs73338133	C	T	96.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	179136138	rs6601068	A	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	179150788	.	G	GT	1271.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.392;QD=17.91;ReadPosRankSum=1.023;SOR=0.429;set=HC	GT:AD:AF:DP	1/1:4,67:0.94:71
chr5	179153577	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.25;ReadPosRankSum=-0.115;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	179155495	rs76121552	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	179160185	rs76621265	C	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	179226774	rs73349993	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	179226786	.	ACATGTCTGATGCACAGGCAATGAGAACAGG	A	846.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	179227398	rs73349999	G	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	179249827	rs114725045	T	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	179251159	rs115380981	C	T	5932.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	179252075	rs11958669	A	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	179260009	rs2241349	G	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	179260153	rs4935	C	T	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr5	179260494	rs155787	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	179264731	rs10277	T	C	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	179264915	rs1065154	G	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	179267949	rs248248	T	C	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	179269193	rs72813734	G	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	179278196	rs114941898	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	179280379	rs1650893	T	C	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	179287207	.	CGT	C	60	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=60;QD=22.3333333333;SC=TATTTTCTGGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=11;TCF=7;TCR=4;TR=3;WE=179287216;WS=179287197;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr5	179287576	rs248254	C	G	9865.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr5	179290845	rs30386	T	G	14231.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr5	179291279	rs172056	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	179297262	rs407437	T	C	11723.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr5	179297352	rs384668	A	G	9097.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:3,353:0.99:356
chr5	179298342	rs248252	G	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	179299867	rs532795	T	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	179300131	rs269469	T	C	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	179306344	rs115312970	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	179334857	rs185073	A	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=26.06;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	179334884	.	CCGGAGCGGAGCGTG	C	927.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=42.17;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	179347302	rs114664291	G	A	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	179405025	rs9654545	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	179405399	rs27019	C	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	179407229	rs28011	C	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	179440358	rs10516141	T	C	418.80	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr5	179442445	.	A	AAAAGGAGTAGGG	754.73	.	AC=2;AF=1.00;AN=2;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.09;QD=35.94;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	179467721	rs75616919	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	179528351	rs67139455	TG	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	179528359	rs113499659	G	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	179529124	rs7725201	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	179542290	.	TA	T	1086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.059;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:29,92:0.76:121
chr5	179542324	rs140898338	CCT	C	8875.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=43.51;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	179548318	rs34192976	A	AT	524.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.151;QD=16.93;ReadPosRankSum=-0.628;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr5	179548343	rs13160214	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	179565071	rs4700878	G	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	179565136	rs4700715	C	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	179663614	rs6601104	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	179665269	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.506;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr5	179667933	rs6895740	C	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	179686378	rs33928286	G	A	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	179729519	rs1035411	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	179745854	rs35765078	G	A	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr5	179763398	rs6891083	T	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	179779607	rs4627952	G	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	179780292	rs199818683	CCTCCGTGGG	C	2310.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	179780328	rs4572964	G	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	179780340	rs5873687	GT	G	2374.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	179780382	rs11452117	A	AG	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	179780416	rs143170563	TC	T	119.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	179980302	rs10516143	T	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	179980527	rs11738129	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	179991841	rs6874985	A	G	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	179996111	rs6877400	C	T	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	179998454	rs13164597	C	T	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	180047739	.	CGT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.670;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:132,19:0.13:151
chr5	180076419	.	C	T	858.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	180076460	rs147801168	G	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	180165983	rs2054696	G	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	180166141	rs9329115	C	T	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	180166461	rs10464105	C	G	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	180218668	rs634501	A	G	11402.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr5	180276402	rs168726	C	T	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	180278533	rs112485824	T	TA	1350.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.833;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=-0.938;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:2,64:0.97:66
chr5	180288239	rs2121117	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	180329517	rs111618652	GT	G	2847.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:7,150:0.96:157
chr5	180377018	rs7703365	C	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	180409217	rs73815148	G	A	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	180409595	rs4397092	A	G	9634.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr5	180432416	rs7726150	C	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	180432564	rs73815153	G	T	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	180432662	rs7726604	C	G	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	180432666	rs7726607	C	G	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	180432747	rs59220426	C	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	180472498	rs28677846	C	T	11869.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:2,463:1.00:465
chr5	180472513	rs6894087	A	G	12302.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr5	180474814	rs13359580	CA	TG	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	180477449	rs7702426	C	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	180477505	rs7701349	G	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	180480316	rs202103036	G	A	5899.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=-0.905;SOR=0.340;set=HC	GT:AD:AF:DP	1/1:1,223:1.00:224
chr5	180482303	rs11353483	TA	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-0.439;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:95,26:0.21:121
chr5	180485353	rs3806869	G	A	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	180486785	rs10068763	G	C	11705.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.178;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.097;QD=24.14;ReadPosRankSum=1.570;SOR=0.524;set=HC	GT:AD:AF:DP	1/1:2,483:1.00:485
chr5	180551775	rs10035767	T	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr5	180552412	rs7724668	G	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	180582314	rs12108779	T	C	3446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.40;MQRankSum=-0.733;QD=45.35;ReadPosRankSum=-1.019;SOR=0.619;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr5	180582321	rs57951228	A	G	3495.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.695;MLEAC=2;MLEAF=1.000;MQ=56.10;MQRankSum=-0.934;QD=39.72;ReadPosRankSum=0.655;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:2,86:0.98:88
chr5	180582604	rs2546423	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	180583039	.	G	GTTCTTTCTTTCTTTCTTTCTTTCT	485.74	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	180622810	rs12109120	G	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	180625373	rs7701372	G	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	180625672	rs2770940	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	180626036	rs2770941	G	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	180626224	rs2391740	A	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	180626254	rs2545053	C	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	180626305	rs2391741	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	180626313	rs2391742	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	180626927	rs416574	A	G	7760.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	180627048	rs61743103	C	T	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	180627224	rs2546397	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	180631544	rs60825905	CA	C	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	180631817	rs2545112	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	180632271	rs6869738	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	180651515	rs74365536	C	T	10401.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr5	180651861	rs73365905	G	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	180651897	rs77281389	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	180652241	rs2259749	T	C	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	180657711	rs11949220	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	180660447	rs55928464	G	C	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	180661948	rs77505387	C	G	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:3,273:0.99:276
chr5	180663941	rs113679128	G	GT	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr5	180664105	rs2770995	C	G	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	180664759	rs34681418	CA	C	362.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	180665798	.	C	CA	293.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=16.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	180666373	rs200700750	CAA	C	10817.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	180668964	rs2241370	T	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	180669619	rs6891817	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr5	180670251	rs1279738	C	G	8581.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	180687428	rs200454506	CTCT	C	13253.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr6	292694	rs3832447	GC	G	2781.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:120,87:0.42:207
chr6	311791	.	T	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.075;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr6	311797	.	G	GT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.280;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr6	312029	rs150517961	TAATG	T	1466.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:130,71:0.35:201
chr6	335069	rs7753848	T	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.947;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr6	335175	rs2671431	A	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	335251	rs3757305	T	C	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.368;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:125,74:0.37:199
chr6	335251	.	TGT	CGC	897	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=23;MQ=60.0;NF=17;NR=17;PP=897;QD=27.9549374959;SC=ACTGTGAAGTTGTCAGAGCTC;SbPval=0.55;Source=Platypus;TC=82;TCF=41;TCR=41;TR=34;WE=335261;WS=335241;set=Platypus	GT:AD:AF:DP	1/0:48,34:0.41:82
chr6	335253	rs3757306	T	C	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.613;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:123,76:0.38:199
chr6	335268	rs4959733	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,93:0.49:189
chr6	346429	rs10642379	G	GAC	935.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.377;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:200,74:0.27:274
chr6	348051	rs1877172	A	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr6	348080	rs2797333	A	G	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr6	348906	rs11242812	G	A	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.956;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:61,37:0.38:98
chr6	350940	rs11408655	T	TA	977.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr6	367243	rs7776416	T	C	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:79,107:0.58:186
chr6	367352	rs7764099	C	T	6251.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:223,304:0.58:527
chr6	367481	rs7738368	T	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.071;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:252,71:0.22:323
chr6	367552	rs12527701	C	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr6	394711	rs2797308	T	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr6	397290	rs1775589	T	C	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.160;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr6	497520	rs6909878	G	C	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:110,143:0.57:253
chr6	532650	rs138016298	G	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	554045	rs11399543	C	CT	376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-0.357;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr6	556147	rs2476844	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	564015	rs146021282	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,12:0.20:59
chr6	564515	rs2277096	G	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr6	572480	rs2073009	G	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr6	572714	rs12154040	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	576902	rs708038	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr6	597871	rs4960092	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	599042	rs2294664	T	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr6	599046	rs75603238	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.856;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr6	599209	rs61748570	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=2.797;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chr6	601200	.	T	G	193	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=2;MGOF=23;MMLQ=21;MQ=59.84;NF=9;NR=10;PP=193;QD=11.9879585551;SC=TAAAATCCCCTTGTGCGAATC;SbPval=0.52;Source=Platypus;TC=53;TCF=24;TCR=29;TR=19;WE=601208;WS=601190;set=Platypus	GT:AD:AF:DP	1/0:34,19:0.36:53
chr6	601229	.	A	G	137	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=24;MQ=59.71;NF=7;NR=6;PP=137;QD=13.2131701959;SC=TTCTCACACCAAGAACACCCC;SbPval=0.33;Source=Platypus;TC=37;TCF=16;TCR=21;TR=13;WE=601237;WS=601219;set=Platypus	GT:AD:AF:DP	0/1:24,13:0.35:37
chr6	601244	rs1766844	A	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	601269	.	A	G	86	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=41;MMLQ=24;MQ=55.34;NF=3;NR=4;PP=86;QD=17.2530303639;SC=TTCTCACACCAAGAACACCCC;SbPval=0.44;Source=Platypus;TC=18;TCF=6;TCR=12;TR=7;WE=601277;WS=601259;set=Platypus	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	619293	rs1150855	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:105,44:0.30:149
chr6	619600	rs1150856	A	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr6	656143	rs1211554	C	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:51,113:0.69:164
chr6	707271	rs188620802	C	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:403,216:0.35:619
chr6	1312998	rs148598230	T	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr6	1313117	rs9502889	A	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	1313121	rs9502890	A	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	1313952	rs992327	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	1390276	.	CCCG	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-4.210;QD=0.97;ReadPosRankSum=-0.512;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:73,8:0.10:81
chr6	1391085	rs147426137	G	GGGC	3070.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.50;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	1612141	.	CGCG	C	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.275;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:205,23:0.10:228
chr6	1742794	rs3734739	A	G	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:110,236:0.68:346
chr6	1742908	rs3734740	C	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	1960335	rs1323632	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.20;ReadPosRankSum=-0.751;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	2124999	rs1033533	C	G	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.645;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:152,46:0.23:198
chr6	2678750	rs4959699	T	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	2683439	rs898772	T	A	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	2685448	rs73717403	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	2685677	rs966232	T	C	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr6	2685775	rs34953021	G	A	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:260,121:0.32:381
chr6	2689217	rs6930915	A	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	2689340	rs6935749	T	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	2692877	rs3887183	G	A	98.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	2692878	.	G	A	98.28	.	AC=2;AF=1.00;ALERT;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	2749661	rs2296355	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.324;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr6	2783868	rs67862398	C	CTTT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-1.234;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr6	2834130	rs34648853	G	T	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:87,168:0.66:255
chr6	2834265	rs386915	C	T	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,82:0.68:121
chr6	2838046	rs316339	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr6	2838248	rs316341	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr6	2838844	rs34825616	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr6	2896280	rs76406624	A	G	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:33,105:0.76:138
chr6	2900084	rs116436156	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr6	2948965	rs318426	C	T	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	2953252	rs2244693	T	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr6	2953445	rs3818276	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	2953496	rs12209811	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr6	2959513	rs2236277	C	T	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:114,166:0.59:280
chr6	2966681	rs7751512	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=1.010;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr6	3010298	rs28383623	A	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:105,71:0.40:176
chr6	3010390	rs1143684	C	T	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	3010459	rs2475208	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr6	3010482	rs3923259	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr6	3012725	rs11351160	TG	T	2051.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr6	3015476	rs2038560	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.919;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr6	3015477	rs2038561	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.919;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr6	3015790	rs1049115	A	G	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr6	3017011	rs28383636	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr6	3017138	rs1130428	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:180,64:0.26:244
chr6	3017302	rs148589567	ACG	A	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.948;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr6	3019634	rs45445297	C	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.743;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:119,53:0.31:172
chr6	3019654	rs4149370	T	C	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	3077141	rs2272990	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	3085477	rs909966	A	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr6	3106311	rs9501920	G	T	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	3118947	rs2231355	A	G	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	3138194	rs1534998	T	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	3156530	rs3734489	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.299;MLEAC=1;MLEAF=0.500;MQ=53.58;MQRankSum=0.990;QD=2.30;ReadPosRankSum=2.048;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr6	3157854	rs9501929	T	C	195.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=1.907;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr6	3227037	rs73349465	G	A	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	3255163	rs11242830	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	3255280	rs112268663	G	A	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,86:0.57:150
chr6	3255327	rs9503497	G	A	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr6	3255340	rs9503498	A	C	4407.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:88,120:0.58:208
chr6	3263830	rs12193912	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr6	3264101	rs4959785	A	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-1.609;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:63,84:0.57:147
chr6	3264487	rs4959786	T	C	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chr6	3264502	rs4959787	G	C	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:67,138:0.67:205
chr6	3264527	rs4959789	T	C	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:63,145:0.70:208
chr6	3264582	rs11757564	G	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:41,117:0.74:158
chr6	3264671	rs13193012	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	3287118	rs6910086	T	C	5689.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=4.428;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-0.520;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,218:0.99:220
chr6	3290215	rs35568219	CTT	C	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=9.333;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.039;QD=8.05;ReadPosRankSum=-0.067;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr6	3323498	rs73722419	A	T	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:114,193:0.63:307
chr6	3410247	rs2277076	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr6	3439459	rs76903505	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr6	3439510	rs9503595	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	3439595	rs35613438	G	GA	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr6	3727811	rs226959	C	G	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	3728024	rs7767269	A	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr6	3739134	.	G	A	201.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	4020540	rs36124455	A	AT	1229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=2.257;QD=9.68;ReadPosRankSum=2.378;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:35,92:0.72:127
chr6	4021554	rs11752006	A	G	8278.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	4031998	rs9503893	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	4033065	rs6924389	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	4037582	rs7763233	C	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	4041222	rs9503896	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	4047309	rs9502111	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	4049321	rs9503901	C	T	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	4049494	rs9503902	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	4052167	rs3747761	C	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	4052458	rs3833454	G	GT	967.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	4057233	rs853407	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	4057429	rs853408	A	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	4079210	rs652493	G	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.211;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr6	4079858	rs589494	C	G	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:198,102:0.34:300
chr6	4079875	rs665728	T	C	11289.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	4084885	rs6914457	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:186,95:0.34:281
chr6	4087934	rs619483	G	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.916;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-1.529;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:90,49:0.35:139
chr6	4087948	rs9503910	G	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:51,92:0.64:143
chr6	4119516	rs2326408	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	4119553	rs34320283	ATT	A,AT	1026.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.975;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=0.372;QD=13.33;ReadPosRankSum=-0.624;SOR=0.234;set=HC	GT:AD:AF:DP	1/2:9,28,40:0.36,0.52:77
chr6	4126097	rs661404	G	A	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	4133766	rs853421	C	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	4133953	rs73717455	T	C	11618.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr6	4134031	rs853422	A	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	4734868	rs62384814	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr6	4735071	rs28360500	C	G	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-2.234;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:145,84:0.37:229
chr6	4773289	rs6927577	G	A	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	4773330	rs6908435	A	T	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	4773343	rs148548907	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:70,120:0.63:190
chr6	4773424	rs201276675	T	C	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.246;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:183,81:0.31:264
chr6	4892381	rs734783	C	T	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:141,219:0.61:360
chr6	4936074	rs1539004	T	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	4937662	rs9502253	A	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	4937728	rs36001374	C	CA	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.279;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr6	4937742	rs61406305	C	CT	1769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.98;ReadPosRankSum=-1.195;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:33,44:0.57:77
chr6	4937747	rs56133250	A	G	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.51;ReadPosRankSum=-1.384;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:36,52:0.59:88
chr6	4943846	rs11963443	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr6	4952413	rs2793263	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	4995275	rs62385117	G	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	4996543	rs62385118	C	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr6	4998963	rs1749144	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	4999193	rs396839	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.56;ReadPosRankSum=0.305;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	5000721	rs2764108	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	5000724	rs10631918	C	CT	480.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	5000779	rs7744457	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr6	5001341	rs1749158	C	T	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:93,174:0.65:267
chr6	5001577	rs912711	G	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	5003952	rs4960056	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	5086070	rs667752	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	5086211	rs584962	G	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	5109592	rs9606	T	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	5138809	rs11301112	GT	G	122.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	5139012	rs463054	C	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	5148679	.	T	TTCTGAATCGTAATCCTGAGCTGGGCTGGGGGCGCAGAGTCAGAACTCTGAATCGTAATCCTGAGCTGGGCTGGTGGGGCAGAGTCAGAAC	1253.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=9.793;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.86;ReadPosRankSum=3.761;SOR=1.673;set=HC	GT:AD:AF:DP	1/1:15,30:0.67:45
chr6	5148719	rs200871	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	5187217	rs34616988	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.93;ReadPosRankSum=0.509;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	5217010	rs41302851	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr6	5260812	rs7752203	C	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	5260936	rs2224391	A	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	5260975	.	G	GAA	2407.73	.	AC=1;AF=0.500;AN=2;DP=140;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr6	5431960	rs10900967	A	G	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	5545654	rs7749599	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr6	5999464	rs3749860	C	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,17:0.24:71
chr6	6003513	rs3792947	A	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	6145726	rs1050782	A	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	6167621	rs435048	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	6169656	rs7769202	T	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:67,115:0.63:182
chr6	6174786	rs380058	G	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	6174856	rs5986	T	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,41:0.34:122
chr6	6175174	rs3024444	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr6	6250967	rs3024370	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr6	6251275	rs3024368	T	TA	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr6	6318921	rs11414870	G	GA,GAA	1027.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.293;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-0.474;SOR=0.559;set=HC	GT:AD:AF:DP	1/2:9,39,21:0.57,0.30:69
chr6	6320808	rs2815822	T	G	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,116:0.65:178
chr6	6588881	rs977785	A	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.143;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr6	6589192	rs112924538	G	GGA	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	6625418	rs2233124	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	6649974	rs3062400	A	AAGG	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=42.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	7226959	rs9505085	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr6	7229190	rs9502563	C	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr6	7229346	rs2714315	T	C	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.338;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:68,117:0.63:185
chr6	7229545	rs146744494	G	A	4146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.534;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:584,253:0.30:837
chr6	7230680	rs9502564	G	T	6942.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:173,320:0.65:493
chr6	7232186	rs9505086	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:79,51:0.39:130
chr6	7246678	rs199689305	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:62,91:0.59:153
chr6	7247248	rs2256596	T	C	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,78:0.70:111
chr6	7295240	rs2714360	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr6	7295300	rs35998405	TA	T	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,64:0.69:93
chr6	7295755	rs2714361	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	7297449	rs371882296	C	CAAA	109	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	7298287	rs2714309	G	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr6	7303735	rs9505131	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	7310060	rs9379088	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.261;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr6	7310259	rs10004	A	G	1372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.097;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:249,94:0.27:343
chr6	7329873	rs2764095	T	C	179.96	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	7330169	rs9379089	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	7330194	rs11381590	T	TG	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr6	7368917	rs1324502	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	7397125	.	GGT	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.922;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr6	7558318	rs10484326	T	C	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=0.222;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:111,60:0.35:171
chr6	7559320	rs140128645	G	GA	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	7559364	rs75112225	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr6	7559436	rs111310626	T	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr6	7559443	rs113028223	G	GC	1331.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,65:0.68:95
chr6	7563983	rs2806234	T	G	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr6	7564139	rs1358903	C	G	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr6	7565490	.	AT	A,ATT	862.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=54;set=Intersection	GT:AF:DP	1/2:0.79,0.17:53
chr6	7567970	rs2076296	C	T	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	7568598	rs79819137	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr6	7568640	rs111517634	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:40,91:0.69:131
chr6	7569348	rs112246801	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr6	7570850	rs79083795	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	7571874	rs926411	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	7572262	rs2076304	A	G	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr6	7574805	rs2259208	C	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	7576527	rs1016835	G	A	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	7577354	rs2064218	C	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr6	7578819	rs2806229	T	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	7578823	rs2842691	G	A	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	7579363	rs2806227	A	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	7579393	rs2744379	CA	TG	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	7579412	rs2806225	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	7579436	rs6905839	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr6	7580958	rs2076299	A	G	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:198,333:0.63:531
chr6	7584617	rs2076300	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:173,86:0.33:259
chr6	7585967	rs2744380	G	C	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	7590624	rs2757594	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-2.204;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr6	7590653	rs2744384	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.790;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:72,35:0.33:107
chr6	7595126	rs12664272	G	A	55.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	7605505	rs9505238	T	A	445.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.730;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=0.893;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr6	7606255	rs2757597	G	A	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	7862631	rs17557	G	C	7846.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:4,304:0.99:308
chr6	7879407	rs267172	T	C	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	7883386	rs9502656	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.501;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr6	7889088	rs1225944	A	G	16649.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr6	7899765	.	A	AGAGGGAGG	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=61.06;MQRankSum=5.363;QD=3.62;ReadPosRankSum=-0.304;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr6	7900028	rs1225954	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr6	7986654	rs197128	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	7986708	.	C	G	768.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr6	7987883	rs6597293	G	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr6	7987921	rs61749569	T	G	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:90,188:0.68:278
chr6	8015821	rs3734591	T	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr6	8016089	rs2057185	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=2.029;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr6	8026577	rs9328452	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.671;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:78,42:0.35:120
chr6	8027799	rs138978548	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr6	8041545	rs55949249	C	CTTTTTTT	47.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=15.76;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,2:0.67:3
chr6	8054413	rs2743993	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	8073835	rs369827562	ATTG	A	1578.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr6	8078772	rs114165363	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.98;ReadPosRankSum=0.955;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	8102885	rs112839011	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:43,98:0.70:141
chr6	8413890	rs3757099	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	8417521	rs6905235	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	8419242	rs1360854	G	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	8428137	rs3215958	A	AAGT	1316.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr6	8430049	rs6918877	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	8434592	rs17143794	C	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr6	8434653	rs58929031	T	G	3760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.93;ReadPosRankSum=0.446;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:68,96:0.59:164
chr6	8434658	rs59964126	C	T	3748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.92;ReadPosRankSum=0.380;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:71,100:0.58:171
chr6	8435454	rs6597317	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-2.300;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:68,35:0.34:103
chr6	9616231	rs143324041	A	AGAAGAAGAAGAG	2787.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.500;MQ=63.01;MQRankSum=-5.046;QD=18.10;ReadPosRankSum=5.995;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:59,95:0.62:154
chr6	9616235	.	G	GA	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.410;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=17.945;MLEAC=1;MLEAF=0.500;MQ=63.06;MQRankSum=7.253;QD=3.18;ReadPosRankSum=-2.068;SOR=2.358;set=HC	GT:AD:AF:DP	0/1:124,29:0.19:153
chr6	9616237	.	G	GAAGAAGAAGAAGAAGAAGAAGAA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=10.160;MLEAC=1;MLEAF=0.500;MQ=63.01;MQRankSum=4.924;QD=2.34;ReadPosRankSum=0.660;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:127,29:0.19:156
chr6	9705636	rs12215551	T	C	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.217;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:206,74:0.26:280
chr6	9707874	rs143425289	AAAT	A	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	9707900	rs12216536	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	9708174	rs73720795	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr6	9750430	rs10949284	T	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr6	9750730	rs375191856	GTAATAATAA	G	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.17;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	9776194	rs9370818	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	9795507	rs141334431	AGAG	A	388.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=3.479;QD=35.31;ReadPosRankSum=1.433;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr6	9795586	.	G	GGAAGAAGAAGAAGAAGAAGAAGAAGAA	1025.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.84;QD=64.11;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	9860514	rs150538680	C	CA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.674;QD=5.26;ReadPosRankSum=-1.576;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	9922006	rs1925775	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	10398707	rs3734391	G	A	3914.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:107,186:0.63:293
chr6	10398982	rs303048	A	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	10401034	rs34396413	CAAG	C	4581.73	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:245,128:0.34:373
chr6	10402438	rs111396056	C	CAG	4865.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	10405025	rs138809786	TC	T	928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=1.437;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr6	10412735	rs371390405	AG	A	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.842;QD=7.18;ReadPosRankSum=0.516;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	10415307	rs1800927	C	G	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.536;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:238,79:0.25:317
chr6	10430171	rs303061	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	10439968	rs9295535	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=0.262;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	10529809	.	C	T	3409.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,147:0.67:221
chr6	10586112	rs115219599	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr6	10587038	rs539351	C	G	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	10621547	rs9460944	C	T	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.907;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:232,118:0.34:350
chr6	10626945	rs113642669	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	10634960	rs34276843	AT	A	118.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.849;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	10647272	rs9885719	C	T	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	10687616	rs144292063	TA	T	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.644;QD=4.44;ReadPosRankSum=0.924;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr6	10687746	rs7749306	G	T	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:126,180:0.59:306
chr6	10695158	rs7745856	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.099;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr6	10695488	rs7759621	G	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.320;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr6	10695491	rs7742220	A	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=0.906;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	10697440	rs12661484	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr6	10697781	rs76347296	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	10702575	rs60903589	T	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.337;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.385;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	10702584	rs60304219	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.876;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.209;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	10702690	rs57403715	A	G	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:206,108:0.34:314
chr6	10702782	rs111461026	T	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:286,129:0.31:415
chr6	10702911	rs9467280	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr6	10703704	rs112855894	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-1.490;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr6	10704693	rs144148084	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.308;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	10764727	rs126405	A	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	10775446	rs478791	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	10785011	rs113945134	C	CCAGA	12770.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.10;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	10785263	rs6936890	C	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	10791859	rs518954	A	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	10792197	rs521802	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	10798249	.	G	A	358.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	10802045	rs569418	C	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	10808936	rs3817829	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr6	10814091	rs6909367	A	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:86,145:0.63:231
chr6	10882070	rs16870746	A	G	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=7.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=0.340;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:72,48:0.40:120
chr6	10882100	rs2153156	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	10882175	rs2275387	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.414;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr6	10887251	rs9366663	T	C	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=0.937;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr6	10887251	.	TCG	CCC	967	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=24;MQ=59.95;NF=19;NR=11;PP=967;QD=34.0155958287;SC=CAGGGCTCTTTCGGCAGCGCC;SbPval=0.51;Source=Platypus;TC=65;TCF=42;TCR=23;TR=30;WE=10887261;WS=10887241;set=Platypus	GT:AD:AF:DP	1/0:35,30:0.46:65
chr6	10887253	rs9358956	G	C	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=1.346;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr6	10887276	rs9348724	C	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr6	10891781	rs1538441	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	10891838	rs78570106	ATCTC	A	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	10891842	.	CTCTCTGTGTG	C	81	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=25;MQ=56.95;NF=1;NR=8;PP=81;QD=11.6666666667;SC=TTTATAATCTCTCTCTGTGTG;SbPval=0.6;Source=Platypus;TC=10;TCF=1;TCR=9;TR=9;WE=10891859;WS=10891828;set=Platypus	GT:AD:AF:DP	1/0:1,9:0.90:10
chr6	10898378	rs115148455	A	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:181,76:0.30:257
chr6	10911282	rs4713044	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr6	10924992	rs1225764	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	10928752	rs57579421	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:81,24:0.23:105
chr6	10931587	rs1225729	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	10942540	rs112584589	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.672;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr6	10942994	rs34079965	CT	C	332.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=1.515;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr6	10955408	rs1225746	C	T	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	10955594	rs1225747	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	10983971	rs4532436	C	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.854;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:66,37:0.36:103
chr6	10989873	rs5874298	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.733;QD=1.53;ReadPosRankSum=0.620;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr6	10990384	rs112090646	GCA	G	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	11005842	rs2295602	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	11094681	rs2273884	G	T	1427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.41;ReadPosRankSum=-1.089;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:3,58:0.95:61
chr6	11094690	rs41270602	G	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.952;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr6	11094764	rs36067344	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr6	11185257	rs10601	A	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	11185533	rs1050775	G	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:91,167:0.65:258
chr6	11185967	rs6456968	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	11190626	rs941982	A	G	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	11190859	rs61755989	G	A	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:77,175:0.69:252
chr6	11192522	rs5874310	C	CT	13796.73	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr6	11192575	rs1465131	C	T	11065.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr6	11192705	rs200291838	A	G	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.158;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.428;QD=5.27;ReadPosRankSum=-3.270;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:157,76:0.33:233
chr6	11192829	rs112090949	C	CTT	632.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	11200421	rs2078599	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	11200574	rs726230	A	C	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:89,164:0.65:253
chr6	11201135	rs3798733	C	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr6	11201157	rs3798734	C	T	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:42,115:0.73:157
chr6	11201437	rs9368610	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	11213468	rs12215094	A	G	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr6	11213832	rs3734404	T	C	11961.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:332,576:0.63:908
chr6	11305230	rs4713379	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	11714639	rs35108078	G	GA	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.698;QD=11.54;ReadPosRankSum=0.303;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:19,71:0.79:90
chr6	11717671	rs13201084	T	C	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:62,169:0.73:231
chr6	11723538	rs210905	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	11768341	rs73721806	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	11779088	rs2076189	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	12016009	rs6916066	G	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr6	12122645	rs6900196	A	G	9180.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:2,347:0.99:349
chr6	12123249	rs2228220	A	G	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:280,137:0.33:417
chr6	12124587	rs2228212	C	G	6740.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:186,315:0.63:501
chr6	12125772	rs1126472	A	G	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.547;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:254,107:0.30:361
chr6	12129936	rs3734271	T	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.424;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:99,36:0.27:135
chr6	12165363	rs219950	C	T	5059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.221;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:176,247:0.58:423
chr6	12290728	rs1800997	TA	T	481.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	12292528	rs1800542	G	A	4653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.666;QD=14.82;ReadPosRankSum=1.623;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:95,219:0.70:314
chr6	12294258	rs5369	A	G	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	12296150	rs6413477	A	AT	1508.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr6	13182718	rs79308302	T	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	13253060	rs11366797	AG	A	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.734;QD=3.59;ReadPosRankSum=-0.220;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr6	13273025	rs114154087	C	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr6	13273242	rs116258059	C	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr6	13273318	rs202054	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	13278648	rs3817735	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	13281412	rs3846903	A	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:148,63:0.30:211
chr6	13281822	rs10542364	TTGTC	T	2214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.495;QD=10.60;ReadPosRankSum=1.806;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:145,64:0.31:209
chr6	13286202	rs368590	G	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	13286268	rs139615132	CTTGT	C	4767.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	13286517	rs617580	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	13287400	rs693758	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	13288535	rs202040	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	13288578	rs202039	G	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	13288648	rs202038	A	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	13288679	rs67298859	GCT	G	5194.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr6	13288737	rs202036	T	A	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	13294976	rs20500	G	A	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	13295004	rs20499	C	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:174,85:0.33:259
chr6	13295502	rs4602719	T	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	13295515	rs1550526	A	C	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	13295536	rs454563	C	T	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	13295752	rs35194435	AG	A	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	13305345	rs34295856	G	C	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-3.827;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:60,81:0.57:141
chr6	13307824	rs2439537	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:105,39:0.27:144
chr6	13308083	rs2439538	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr6	13316658	.	TG	CA	249	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=6;NR=0;PP=249;QD=50.411312477;SC=TTAGATTATATGGACTTTTAC;SbPval=1.0;Source=Platypus;TC=20;TCF=18;TCR=2;TR=6;WE=13316667;WS=13316654;set=Platypus	GT:AD:AF:DP	1/0:14,6:0.30:20
chr6	13316780	.	CAAA	C,CA	3196.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;QD=31.04;SOR=2.608;set=HC	GT:AD:AF:DP	1/2:3,25,75:0.24,0.73:103
chr6	13316805	rs482227	A	G	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-1.160;QD=5.00;ReadPosRankSum=-0.514;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:136,61:0.31:197
chr6	13321097	rs2496132	G	A	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:76,153:0.67:229
chr6	13325279	rs2439553	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	13470113	rs766773	A	T	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:101,187:0.65:288
chr6	13584583	rs2804918	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr6	13592135	rs3734674	C	T	7166.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:205,340:0.62:545
chr6	13611867	rs191757859	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr6	13615667	.	C	CGGA	1540.73	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr6	13618177	rs111485145	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr6	13620877	rs3757260	A	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	13638243	rs2071836	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	13639700	rs6915775	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.584;QD=2.90;ReadPosRankSum=-1.443;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr6	13658893	rs115875006	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.812;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	13659079	rs204232	T	G	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:4,345:0.99:349
chr6	13696990	rs188993189	C	T	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:35,93:0.73:128
chr6	13711279	rs6905991	A	G	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:120,223:0.65:343
chr6	13794044	rs6922822	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr6	13794110	rs4715568	C	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr6	13814338	rs12206286	G	A	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.65;ReadPosRankSum=-1.651;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr6	13814338	.	GCT	ACC	1212	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=10;NR=26;PP=1212;QD=35.1518854128;SC=ACCTCCACGCGCTGCTGCGCC;SbPval=0.7;Source=Platypus;TC=51;TCF=16;TCR=35;TR=36;WE=13814348;WS=13814328;set=Platypus	GT:AD:AF:DP	1/0:15,36:0.71:51
chr6	13814340	rs1204145	T	C	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.43;ReadPosRankSum=-1.449;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:21,53:0.72:74
chr6	14118138	rs2235368	C	G	13303.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=0.282;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:2,518:1.00:520
chr6	15373652	rs11757092	T	A	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=0.910;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:41,109:0.73:150
chr6	15374508	rs9383050	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	15374544	rs2072820	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr6	15401385	.	C	CTA	313.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr6	15468722	rs147212247	AGGGTGAG	A	827.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	15496662	rs742099	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:190,104:0.35:294
chr6	15497422	rs9349979	A	G	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr6	15504589	rs760659	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr6	15511429	rs55742636	C	CCCAT	806.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,25:0.27:93
chr6	15511717	rs150654103	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr6	15520911	rs113118756	GAC	G	1550.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:127,56:0.31:183
chr6	15520920	rs112303618	G	GCA	3032.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:85,106:0.55:191
chr6	15533733	rs11753919	C	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	15546294	rs34253215	C	CT	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.182;QD=5.45;ReadPosRankSum=-1.593;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr6	15586009	rs6926401	G	T	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	15593240	rs7758659	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	15595481	.	CTTTTTTTTTTTTTT	C	1568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=22.099;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.522;QD=30.76;ReadPosRankSum=3.192;SOR=2.555;set=HC	GT:AD:AF:DP	0/1:6,45:0.88:51
chr6	15652452	rs2619526	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	15660871	rs909706	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	15662891	rs9476887	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	16129498	rs3765234	G	T	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:57,79:0.58:136
chr6	16145325	rs9370867	A	G	7852.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	16147098	rs35112615	T	TA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.459;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr6	16246905	rs2274152	G	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr6	16250416	rs148452896	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr6	16274626	rs10484359	C	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:118,52:0.31:170
chr6	16274791	rs9396661	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr6	16278972	rs112464570	A	G	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:52,128:0.71:180
chr6	16279189	rs739471	T	C	333.10	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	16290761	rs1042391	T	A	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	16290862	rs6926552	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	16306977	rs34324423	T	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:240,118:0.33:358
chr6	16326611	rs72840240	C	A	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	16327330	rs2075974	T	C	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:183,100:0.35:283
chr6	16327615	rs179990	A	G	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:3,494:0.99:497
chr6	16327864	.	G	GTGC	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.674;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:100,36:0.26:136
chr6	16753373	.	CAACA	C	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.525;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=-0.891;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	16753374	.	AAC	A	146	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=4;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=146;QD=86.5;SC=TTCAACAGCCAACAAAGTAAG;SbPval=0.74;Source=Platypus;TC=8;TCF=4;TCR=4;TR=2;WE=16753386;WS=16753364;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr6	16753377	.	AA	GG	119	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=4;MGOF=0;MMLQ=18;MQ=60.0;NF=2;NR=1;PP=119;QD=57.4892916207;SC=AACAGCCAACAAAGTAAGGGA;SbPval=0.7;Source=Platypus;TC=12;TCF=8;TCR=4;TR=3;WE=16753386;WS=16753364;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	16753378	.	A	AGG	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=-0.980;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	17102429	rs9367941	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:112,41:0.27:153
chr6	17102574	rs145164002	TAAAC	T	1528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=2.093;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:46,71:0.61:117
chr6	17102600	rs2147230	A	G	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.394;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:71,46:0.39:117
chr6	17282415	rs1108512	G	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:56,18:0.24:74
chr6	17513954	rs4716146	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	17606413	rs1969830	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	17616493	rs7765156	C	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	17616556	rs3777712	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr6	17628841	rs11422297	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.904;QD=8.36;ReadPosRankSum=1.163;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	17628850	rs112521393	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=-0.434;QD=2.58;ReadPosRankSum=1.181;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	17629616	rs942467	G	A	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	17633061	rs2274136	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	17637958	rs2229509	G	A	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:131,236:0.64:367
chr6	17649384	rs61756010	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:91,48:0.35:139
chr6	17706404	rs13219815	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr6	17706493	rs13219933	G	A	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:330,181:0.35:511
chr6	17764731	rs6459569	G	C	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:105,176:0.63:281
chr6	17771246	rs9477522	A	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	17777614	rs11396690	C	CT	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.805;QD=4.16;ReadPosRankSum=-0.832;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:135,86:0.39:221
chr6	17779474	rs67458581	ATATATATATATATATTTTTTTTTTTTTTT	A	413.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	17779731	rs9477524	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr6	17779922	.	G	GA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.159;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	17783799	rs115912248	T	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.206;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr6	17785948	rs4716186	A	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	17788088	rs192133963	C	G	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:347,194:0.36:541
chr6	17794494	rs3734234	G	A	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:51,107:0.68:158
chr6	17799766	rs6459573	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	17809199	rs6913612	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	17815716	rs6920106	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr6	17817235	rs9383327	C	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr6	17826108	rs79884092	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.277;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr6	17834213	rs4716190	T	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:166,96:0.37:262
chr6	17855864	rs624105	G	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	17882140	rs7757737	A	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	17951698	rs191456636	T	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.653;QD=4.97;ReadPosRankSum=0.671;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr6	17951755	rs77607279	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.655;QD=5.41;ReadPosRankSum=0.042;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	18134008	rs113956700	G	GA	470.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.351;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:6,33:0.85:39
chr6	18139214	rs2842934	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	18139802	rs12201199	A	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	18148019	rs4449636	G	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	18148247	rs12529220	T	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	18149526	rs3930696	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	18166802	rs912528	T	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	18171477	rs1011620	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	18187916	rs372534	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	18188091	rs429158	T	C	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.311;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:385,170:0.31:555
chr6	18201961	rs214612	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	18207876	rs214598	G	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr6	18208319	rs214596	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,42:0.34:123
chr6	18213988	rs6903583	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:121,46:0.28:167
chr6	18215166	rs66551414	C	CA	1206.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=12.226;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=20.81;ReadPosRankSum=2.408;SOR=3.637;set=HC	GT:AD:AF:DP	1/1:3,55:0.95:58
chr6	18215303	rs214585	T	C	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	18222102	rs140834	C	CTT	7533.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	18226340	rs214503	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=-0.497;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	18256224	rs58144742	CT	C	258.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr6	18258447	rs79737953	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	18258516	rs172520	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	18264355	rs214514	G	A	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	18387815	rs764885	A	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	18406387	rs6925570	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	18463633	rs9371061	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:77,99:0.56:176
chr6	18572056	rs12197631	T	G	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,79:0.75:105
chr6	19837966	rs1047316	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	19837969	rs12662234	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	20109696	rs2457334	A	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	20131236	rs16883400	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr6	20144637	rs1202195	G	A	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	20153058	rs144811848	GTTTGT	G	1521.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=43.48;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	20403946	rs188573308	C	T	721.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=-2.174;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,33:0.87:38
chr6	20404146	.	G	T	654.77	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:95,42:0.31:137
chr6	20548795	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=8.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.048;SOR=1.895;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	20599628	rs9366357	C	T	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=2.014;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:64,87:0.58:151
chr6	20758704	rs2820000	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	20758808	.	G	GT	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.734;QD=3.50;ReadPosRankSum=0.635;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:60,33:0.35:93
chr6	20758943	rs2820001	G	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	20781532	rs145224197	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-1.257;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr6	21201493	rs9465994	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr6	22136764	rs79555544	G	A	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.864;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:263,101:0.28:364
chr6	22136863	rs186644563	A	G	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.216;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:295,110:0.27:405
chr6	22146818	rs5874858	AT	A	126.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.69;ReadPosRankSum=0.385;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr6	22292976	rs1205955	A	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr6	22570395	rs190076368	C	T	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-0.344;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:30,63:0.68:93
chr6	24175021	rs9460973	T	A	7164.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr6	24178499	rs78242664	G	A	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr6	24205464	rs6907894	C	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:322,111:0.26:433
chr6	24302087	rs807703	G	A	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr6	24409846	rs7750241	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	24418502	rs3736798	A	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.66;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	24418581	rs2753925	A	T	218.50	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:2,13:0.87:15
chr6	24437445	rs1772256	G	A	9113.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr6	24437509	rs61733146	A	T	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:104,151:0.59:255
chr6	24445718	rs793714	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	24448061	rs796985	A	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	24450168	rs5874981	G	GCCT	3033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.550;QD=10.32;ReadPosRankSum=1.128;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:207,87:0.30:294
chr6	24454196	rs9393558	G	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:48,97:0.67:145
chr6	24463055	rs2793442	A	G	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	24463167	rs2793443	T	C	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	24467366	rs6928435	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	24467384	rs74448794	G	A	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	24467633	rs2793445	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	24473723	rs147067503	CATTA	C	407.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	24473784	rs9461026	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	24475300	rs6901703	A	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	24476553	rs760904	G	A	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	24489510	rs144052201	C	G	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	24505030	rs2744583	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	24523174	rs67603730	G	A	1256.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=-0.569;SOR=0.536;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr6	24547606	rs2817245	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	24551624	rs2076313	A	G	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	24554616	rs2817251	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	24554762	rs2243831	T	C	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr6	24556675	rs807538	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	24563552	rs2744549	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr6	24564540	rs2817191	A	G	8639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.180;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:277,411:0.60:688
chr6	24564544	rs2744550	T	C	16191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=23.81;ReadPosRankSum=0.789;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:271,409:0.60:680
chr6	24564573	rs2760164	G	A	12708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.410;QD=23.58;ReadPosRankSum=-0.428;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:214,325:0.60:539
chr6	24564579	rs2760163	A	G	12655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.418;QD=24.20;ReadPosRankSum=-0.191;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:209,314:0.60:523
chr6	24564694	rs139338511	A	AG	3680.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	24570344	rs2817195	A	G	140.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	24576631	rs2744559	C	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	24576806	rs9918327	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:116,55:0.32:171
chr6	24578272	rs2760157	G	A	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	24580213	rs2744564	C	G	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:65,122:0.65:187
chr6	24583804	rs6901322	T	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr6	24583810	rs77915956	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:136,57:0.30:193
chr6	24596478	rs4576240	T	G	17112.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,650:1.00:650
chr6	24653376	rs1129644	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	24657964	rs3212231	T	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	24659071	rs2143340	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr6	24666320	rs11456603	T	TA	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr6	24667205	rs17243164	T	TCC	7711.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	24667662	rs3181228	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr6	24687765	rs926529	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	24687888	rs76228045	A	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:61,155:0.72:216
chr6	24698215	rs7765904	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:235,103:0.30:338
chr6	24714681	.	T	TA	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.288;QD=5.30;ReadPosRankSum=0.684;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:61,45:0.42:106
chr6	24720194	rs148109168	T	TG	3202.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:69,126:0.65:195
chr6	24777547	rs111973967	A	AT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.060;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr6	24780892	rs1923185	A	C	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:66,109:0.62:175
chr6	24797647	rs2251702	A	G	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,101:0.75:134
chr6	24818827	rs61733143	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:72,32:0.31:104
chr6	24828490	rs9461073	C	T	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	24836161	rs6901565	C	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	24843452	rs35780910	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:134,63:0.32:197
chr6	24843527	rs35514577	C	T	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:61,170:0.74:231
chr6	24843655	rs34298086	G	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=4.902;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.468;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:75,38:0.34:113
chr6	24843740	rs34016544	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:78,32:0.29:110
chr6	24850325	rs5875008	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-1.134;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	24850715	rs7761191	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	24852751	rs9467333	C	A	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:152,234:0.61:386
chr6	24852962	rs4421189	T	C	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr6	24869300	rs2817747	T	C	3887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=0.586;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:76,186:0.71:262
chr6	24871021	rs2817748	C	A	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.983;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:109,144:0.57:253
chr6	24871031	rs112061020	C	T	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.551;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:180,127:0.41:307
chr6	24871032	rs2817749	G	A	3805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-1.569;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:131,187:0.59:318
chr6	25042286	rs35331447	TA	T	176.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.603;QD=12.63;ReadPosRankSum=0.000;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr6	25082105	rs303010	T	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	25084691	rs303007	C	T	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	25084718	rs303006	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	25092308	rs80136173	A	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.033;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	25097450	rs392852	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	25110097	rs302990	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	25115176	rs57247838	CGTTTTT	C	2618.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	25115397	rs302982	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	25279208	rs6908902	A	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.80;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	25279839	rs377675604	CT	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.020;QD=8.22;ReadPosRankSum=0.401;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr6	25280119	rs6914799	C	A	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.377;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:27,78:0.74:105
chr6	25420344	rs913455	C	G	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr6	25426640	.	ATT	A,AT	1810.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.568;QD=13.22;ReadPosRankSum=-0.176;SOR=0.650;set=HC	GT:AD:AF:DP	1/2:14,65,58:0.47,0.42:137
chr6	25435758	rs9467515	A	G	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:248,137:0.36:385
chr6	25450026	rs9295661	C	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	25450104	rs10214744	G	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr6	25452219	.	C	CT	130.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.402;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=0.412;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	25452220	rs6934330	C	T	126.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.169;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.56;ReadPosRankSum=-0.000;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	25452222	rs67754981	CT	C	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.066;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=1.076;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	25452223	rs55733029	T	C	140.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.096;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.79;ReadPosRankSum=-0.930;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	25471559	rs144894905	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.205;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr6	25492296	rs1034051	C	T	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	25492364	rs1034050	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	25509976	rs4568443	T	C	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:40,109:0.73:149
chr6	25510051	rs3915740	A	G	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.63;ReadPosRankSum=1.894;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr6	25510058	rs4559085	G	C	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.52;ReadPosRankSum=0.645;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr6	25510648	rs7453991	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	25510648	.	TA	CA,CG	93	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=1;MMLQ=24;MQ=60.0;NF=11,6;NR=2,1;PP=93,30;QD=9.82855481132;SC=CATCCAACTATATGTCACCTT;SbPval=0.75;Source=Platypus;TC=15;TCF=12;TCR=3;TR=13,7;WE=25510657;WS=25510638;set=Platypus	GT:AF:DP	0/1:0.87:15
chr6	25510649	rs9461183	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.388;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	25511008	rs34965228	C	CAT	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	25516126	rs301379	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr6	25516158	rs301378	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr6	25554180	rs214049	C	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:98,44:0.31:142
chr6	25557149	rs57318254	T	TAA	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.459;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=2.594;QD=8.20;ReadPosRankSum=1.632;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr6	25600968	rs10456324	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr6	25605091	rs1012899	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr6	25653825	rs62393710	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	25669669	rs2328891	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr6	25670351	rs79348589	C	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr6	25689378	rs11327870	AT	A	898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.035;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:108,81:0.43:189
chr6	25701691	rs6928384	C	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	25726343	rs6940348	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:182,66:0.27:248
chr6	25726621	rs9467583	C	T	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:326,117:0.26:443
chr6	25727382	rs6903757	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:108,40:0.27:148
chr6	25769349	rs1892251	T	C	4164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-1.559;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:121,208:0.63:329
chr6	25773822	.	T	C	7668.77	.	AC=1;AF=0.500;AN=2;DP=517;set=Intersection	GT:AD:AF:DP	0/1:151,360:0.70:511
chr6	25773998	rs59340721	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr6	25798932	rs1165215	G	A	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	25801057	rs1165210	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	25811598	rs56675688	TA	T	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,35:0.35:99
chr6	25813150	rs1165196	G	A	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	25820124	rs6933573	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr6	25820167	rs6933725	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr6	25849620	rs942379	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	25914853	rs34525648	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,76:0.32:240
chr6	25925987	rs3734523	G	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:195,96:0.33:291
chr6	25966708	rs141330141	T	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr6	25967144	rs61737163	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:283,107:0.27:390
chr6	26021813	rs9467664	A	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	26027509	rs73387437	T	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:235,112:0.32:347
chr6	26031868	rs2213284	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	26031962	rs34966100	G	A	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:58,104:0.64:162
chr6	26033506	rs2230655	G	A	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	26033641	rs2230654	G	A	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr6	26033809	rs3842706	T	TAAG	18938.73	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr6	26044369	rs2032447	A	G	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	26045929	rs3752416	T	C	11211.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr6	26056549	rs10425	A	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	26093236	rs1800758	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr6	26094367	rs1572982	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	26104057	rs198854	T	C	222.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-0.915;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr6	26104280	rs2229768	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:248,110:0.31:358
chr6	26104382	rs2229767	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:78,134:0.63:212
chr6	26108282	rs198844	C	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr6	26123629	rs198821	T	C	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=8.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.916;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr6	26123632	rs116104991	T	C	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=5.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.820;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr6	26124089	.	G	A	2410.77	.	AC=1;AF=0.500;AN=2;DP=427;set=Intersection	GT:AD:AF:DP	0/1:284,138:0.33:422
chr6	26124376	rs16891335	G	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,74:0.75:99
chr6	26158456	rs62623440	C	T	6132.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:179,286:0.62:465
chr6	26184082	rs61978632	C	G	7374.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:200,344:0.63:544
chr6	26189312	rs79868973	C	G	3555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.457;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-1.134;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:135,169:0.56:304
chr6	26197493	rs41266801	C	A	5776.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:183,276:0.60:459
chr6	26199222	rs113561314	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:51,104:0.67:155
chr6	26199524	rs438534	A	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	26199822	rs41266807	A	G	6167.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:157,271:0.63:428
chr6	26200083	rs1059486	A	G	13720.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:3,509:0.99:512
chr6	26200256	rs16891397	C	T	2433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=4.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=1.459;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:48,105:0.69:153
chr6	26204833	rs61742993	T	G	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:100,209:0.68:309
chr6	26216432	rs28448296	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr6	26216656	rs41266811	T	C	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:155,255:0.62:410
chr6	26217728	rs1997768	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	26225381	rs147117013	C	G	5840.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:107,264:0.71:371
chr6	26225881	rs56119218	C	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:40,100:0.71:140
chr6	26234883	rs2050950	A	G	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:59,142:0.71:201
chr6	26234952	rs2050948	A	G	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:65,156:0.71:221
chr6	26235300	rs16891464	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	26240624	rs3734533	A	G	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:91,203:0.69:294
chr6	26240649	rs3734534	C	T	5834.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:128,268:0.68:396
chr6	26250254	rs11759720	C	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr6	26252148	rs61746493	C	T	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:147,276:0.65:423
chr6	26273698	rs75138012	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr6	26285683	rs2393593	T	C	17719.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr6	26285867	rs3999544	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	26365702	.	CTGTGTGTGTGTG	C,CTG	529	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=27;MQ=59.87;NF=1,1;NR=13,13;PP=94,529;QD=6.92857142857;SC=GGTGCAGTGCCTGTGTGTGTG;SbPval=0.42;Source=Platypus;TC=26;TCF=1;TCR=25;TR=14,14;WE=26365723;WS=26365692;set=Platypus	GT:AF:DP	0/1:0.54:26
chr6	26368938	rs76764747	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:15,92:0.86:107
chr6	26370605	rs9379860	T	C	9725.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr6	26370707	rs9379862	T	C	11975.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr6	26370920	rs55827419	T	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr6	26374658	rs2073526	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	26385113	rs4490658	A	G	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr6	26385170	rs61364019	G	GT	4356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.875;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:84,208:0.71:292
chr6	26388405	rs62617839	G	A	7390.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:160,341:0.68:501
chr6	26390830	rs2076029	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	26392607	rs142151655	T	C	4365.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:107,196:0.65:303
chr6	26393021	rs1614887	G	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	26405835	rs56161420	G	A	5425.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:98,251:0.72:349
chr6	26406053	rs3857549	C	T	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:86,194:0.69:280
chr6	26406255	rs3857550	G	A	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr6	26408177	rs141319367	G	A	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:106,243:0.70:349
chr6	26410227	rs7770214	G	A	7524.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:174,357:0.67:531
chr6	26411228	.	T	TAAAAAAAAAAAAAAAAA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=37.58;ReadPosRankSum=0.967;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,1:0.33:3
chr6	26411483	rs10946821	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr6	26411895	rs12214924	T	C	4416.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:97,207:0.68:304
chr6	26411963	rs12214976	T	A	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:55,117:0.68:172
chr6	26411987	rs28571747	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,79:0.66:120
chr6	26413088	rs6900725	T	C	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.553;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:43,84:0.66:127
chr6	26413164	rs34577398	CAG	C	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.18;ReadPosRankSum=-0.392;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr6	26413368	rs6901245	T	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr6	26413975	rs56190518	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:32,76:0.70:108
chr6	26422206	rs55786210	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr6	26422260	rs1796522	G	A	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.53;QD=25.77;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	26422307	rs56182232	G	T	3555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-6.967;QD=9.85;ReadPosRankSum=3.177;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:181,180:0.50:361
chr6	26422336	rs55994013	T	C	6659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.500;MQ=51.08;MQRankSum=-9.098;QD=17.43;ReadPosRankSum=2.408;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:205,177:0.46:382
chr6	26422354	rs55775018	C	T	6657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-10.492;QD=17.03;ReadPosRankSum=-2.171;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:215,176:0.45:391
chr6	26422387	rs141260282	C	CCTTCCTCCTCCT	2459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=-13.026;QD=9.28;ReadPosRankSum=-6.147;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:174,91:0.34:265
chr6	26422519	rs111293349	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr6	26422527	rs141119405	TC	T	442.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr6	26423090	rs12191917	C	T	6062.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:124,274:0.69:398
chr6	26423154	rs12198993	T	C	13966.77	.	AC=1;AF=0.500;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	0/1:310,663:0.68:973
chr6	26423317	rs7745238	G	A	4640.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:87,190:0.69:277
chr6	26423560	rs4320356	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr6	26426316	rs10946828	T	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr6	26426487	rs10946829	G	A	8714.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:168,403:0.71:571
chr6	26428062	rs17611141	T	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr6	26428314	rs12201546	G	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.604;QD=16.33;ReadPosRankSum=-0.218;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:22,66:0.75:88
chr6	26428842	rs1741740	A	G	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	26428913	rs369075865	T	C	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:86,194:0.69:280
chr6	26430981	rs2893848	A	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr6	26431340	rs45499696	A	G	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr6	26443853	rs56036950	C	A	5405.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:180,263:0.59:443
chr6	26444089	.	T	A	4258.77	.	AC=1;AF=0.500;AN=2;DP=222;set=Intersection	GT:AD:AF:DP	0/1:40,181:0.82:221
chr6	26444168	rs143665311	C	T	10705.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:5,409:0.99:414
chr6	26445860	rs3846847	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr6	26446209	rs3846848	C	T	7556.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:168,347:0.67:515
chr6	26452349	rs147058580	G	A	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:48,141:0.75:189
chr6	26502319	.	G	C	267.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	26505135	rs3736780	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr6	26505469	rs191587266	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr6	26509392	rs115774646	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr6	26597333	rs3800302	A	G	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:62,120:0.66:182
chr6	26598004	rs4634439	A	G	208.31	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr6	26638503	rs148210763	G	A	5695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=47.57;MQRankSum=-5.883;QD=13.50;ReadPosRankSum=-0.414;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:156,266:0.63:422
chr6	27114425	rs202101103	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.926;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.73;MQRankSum=-10.496;QD=0.85;ReadPosRankSum=-0.346;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:597,110:0.16:707
chr6	27115153	rs61740500	T	C	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:87,175:0.67:262
chr6	27216848	rs1234145	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	27218376	rs76907775	C	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:204,92:0.31:296
chr6	27219491	rs35589403	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.437;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	27223064	rs141138864	AAAGGAGAGCCAGATT	A	2689.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:135,75:0.36:210
chr6	27277402	rs6456773	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	27277480	rs61736086	T	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr6	27277665	rs2281023	G	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:71,148:0.68:219
chr6	27278020	rs16897515	C	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:127,46:0.27:173
chr6	27326863	rs2235232	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	27356527	rs13220817	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	27356867	rs4713091	A	G	12969.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr6	27356902	rs10807020	A	G	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr6	27356925	rs10807021	T	G	11523.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr6	27357308	rs6904883	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr6	27368594	rs147958327	A	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,67:0.60:112
chr6	27368766	rs114755441	C	A	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:70,166:0.70:236
chr6	27424443	rs764461	T	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	27424960	rs10484398	G	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	27425185	rs1883216	C	A	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr6	27425307	rs114337108	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	27435707	rs2272814	G	A	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	27440004	rs7750795	A	C	15092.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr6	27775674	rs200484	A	G	4552.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:117,209:0.64:326
chr6	27775697	rs200485	G	C	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:83,136:0.62:219
chr6	27775987	rs148784606	C	T	2521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=2.091;QD=4.82;ReadPosRankSum=-2.676;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:364,159:0.30:523
chr6	27776002	rs493283	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-7.277;QD=0.08;ReadPosRankSum=3.309;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:495,68:0.12:563
chr6	27782031	rs370155	T	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr6	27782528	rs401763	T	C	4045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=-13.236;QD=17.14;ReadPosRankSum=5.554;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:129,107:0.45:236
chr6	27782535	rs390764	C	T	3920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-13.208;QD=18.85;ReadPosRankSum=5.059;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:106,102:0.49:208
chr6	27782538	rs401754	T	A	3947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-12.910;QD=19.64;ReadPosRankSum=4.462;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:99,102:0.51:201
chr6	27792221	rs200499	C	T	12553.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=44.52;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	27792228	rs200498	T	C	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.00;QD=44.23;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	27799045	rs200488	C	T	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-0.211;QD=13.75;ReadPosRankSum=-0.442;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:42,93:0.69:135
chr6	27799332	rs56342784	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-3.232;QD=6.47;ReadPosRankSum=2.052;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:222,128:0.37:350
chr6	27806167	rs201003	A	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,102:0.64:159
chr6	27806210	.	TGCTATTG	T	701.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr6	27833174	rs200981	A	G	8194.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:203,385:0.65:588
chr6	27835131	rs200947	G	C	7861.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:228,394:0.63:622
chr6	27835272	rs200948	T	C	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:95,180:0.65:275
chr6	27835435	rs200949	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr6	27839746	rs200956	T	C	7339.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:195,343:0.64:538
chr6	27858421	rs200973	A	G	11888.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:343,591:0.63:934
chr6	27879397	rs34957169	T	C	6912.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:152,331:0.69:483
chr6	27925367	rs7767176	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:141,61:0.30:202
chr6	27925762	rs74823587	G	T	6055.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:120,274:0.70:394
chr6	28117443	rs2622322	C	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	28194963	rs62638671	A	G	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:104,161:0.61:265
chr6	28196614	rs1150706	C	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr6	28198281	rs1233713	A	G	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	28198828	rs116289313	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr6	28212748	rs13408	G	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	28213239	rs1150712	T	C	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:130,235:0.64:365
chr6	28215446	rs1233710	C	T	4916.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:125,225:0.64:350
chr6	28215641	rs2235359	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:82,51:0.38:133
chr6	28219270	rs1736904	G	A	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:147,233:0.61:380
chr6	28219826	rs1736895	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	28227436	rs12000	A	G	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:206,92:0.31:298
chr6	28228342	rs1679709	A	G	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:134,83:0.38:217
chr6	28239681	rs2394049	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	28239915	rs11965538	G	A	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:46,108:0.70:154
chr6	28239932	rs61622742	T	TG	5618.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	28252054	rs113110201	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr6	28254988	rs16901846	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr6	28255040	rs1150721	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	28264618	rs113099438	C	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:87,180:0.67:267
chr6	28264692	rs3800325	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,36:0.33:110
chr6	28265640	rs2743554	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr6	28268452	rs1936365	G	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr6	28268484	rs3215466	CT	C	629.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr6	28268497	rs2281043	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr6	28269663	rs1997660	A	G	9003.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr6	28270047	rs6456811	C	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:226,118:0.34:344
chr6	28294550	rs853684	T	C	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	28297313	rs853678	T	A	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:67,134:0.67:201
chr6	28297383	rs853677	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr6	28321544	rs1474589	G	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.604;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr6	28327931	rs34299481	AT	A	394.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr6	28331094	rs17856167	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:206,83:0.29:289
chr6	28331127	rs13201752	AA	GC	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;JOINED;set=Intersection	GT:AD:AF:DP	0/1:221,96:0.30:317
chr6	28331252	rs213228	A	C	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	28331573	rs213227	T	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:70,114:0.62:184
chr6	28334079	rs55924797	CAG	C	3184.73	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:227,93:0.29:320
chr6	28336394	rs10549833	CTT	C	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr6	28358195	rs2859379	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:48,105:0.69:153
chr6	28358320	rs1361385	A	G	7239.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:503,218:0.30:721
chr6	28358335	rs1416918	G	C	7642.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:463,228:0.33:691
chr6	28359170	rs2859348	A	G	9590.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr6	28360969	rs2859357	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.792;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	28403225	rs2071965	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:128,43:0.25:171
chr6	28403603	rs11752919	T	C	3836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.665;QD=4.87;ReadPosRankSum=-0.638;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:545,243:0.31:788
chr6	28474218	rs974334	C	G	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:84,144:0.63:228
chr6	29856218	rs374202554	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=30.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	29856234	rs368391597	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=30.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	29856257	.	G	C	241.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.03;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	29856261	.	G	A	335.78	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.78;QD=47.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	29856263	.	G	A	335.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.38;QD=37.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	29856285	.	C	T	1291.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.42;QD=47.84;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	29856287	.	C	G	1291.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.83;QD=41.67;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	29856368	rs201445355	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.96;QD=24.26;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	29856389	rs199756363	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.40;QD=24.33;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	29856402	rs114880503	A	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.11;QD=24.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	29856438	rs201821855	C	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.29;QD=27.89;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	29910581	rs1059423	C	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	29910583	rs1059426	C	T	95.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=47.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	29910586	rs12721672	G	A	127.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.97;QD=31.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	29910604	rs12721675	C	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.76;QD=28.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	29910698	rs1059449	G	A	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=42.31;MQRankSum=-4.771;QD=28.06;ReadPosRankSum=0.549;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr6	29910703	rs41541222	G	T	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=42.44;MQRankSum=-4.887;QD=27.55;ReadPosRankSum=-0.426;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:13,36:0.73:49
chr6	29910717	rs1064588	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=42.71;MQRankSum=5.400;QD=9.70;ReadPosRankSum=0.154;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr6	29910719	rs2230991	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=42.71;MQRankSum=5.400;QD=11.70;ReadPosRankSum=0.256;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr6	29910721	rs199474424	G	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=43.32;MQRankSum=6.120;QD=10.72;ReadPosRankSum=-1.247;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr6	29910742	rs78306866	G	C	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.966;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=45.05;MQRankSum=-7.164;QD=18.28;ReadPosRankSum=3.215;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:43,43:0.50:86
chr6	29910759	rs1071742	T	A	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.961;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=44.79;MQRankSum=-7.322;QD=20.18;ReadPosRankSum=3.126;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr6	29910761	rs1136688	G	A	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.848;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=44.79;MQRankSum=-7.322;QD=19.93;ReadPosRankSum=3.200;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr6	29910817	rs41559412	G	C	2683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.81;MQRankSum=-3.895;QD=26.06;ReadPosRankSum=0.829;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:27,76:0.74:103
chr6	29910820	rs9260142	G	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.25;MQRankSum=3.136;QD=5.75;ReadPosRankSum=0.095;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr6	29910834	rs63225861	G	C	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.93;QD=46.96;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	29910923	rs9260147	C	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	29910980	rs41552627	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	29911111	.	ACC	A	3812.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.677;MLEAC=2;MLEAF=1.000;MQ=48.62;MQRankSum=2.438;QD=38.91;ReadPosRankSum=1.238;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:6,92:0.94:98
chr6	29911114	.	G	T	3821.78	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.677;MLEAC=2;MLEAF=1.000;MQ=47.84;MQRankSum=2.438;QD=39.00;ReadPosRankSum=0.882;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:6,92:0.94:98
chr6	29911115	.	G	GAA	3812.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.815;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.663;MLEAC=2;MLEAF=1.000;MQ=47.70;MQRankSum=2.420;QD=39.31;ReadPosRankSum=0.697;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:6,91:0.94:97
chr6	29911119	rs3173419	G	C	3661.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.576;MLEAC=2;MLEAF=1.000;MQ=47.24;MQRankSum=2.321;QD=39.80;ReadPosRankSum=0.055;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:6,86:0.93:92
chr6	29911203	rs1059517	A	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	29912493	rs1655894	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.68;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	29912935	rs2916802	C	T	204.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.60;QD=68.28;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	29912944	rs2916803	T	C	235.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.27;QD=33.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	29913042	rs14288	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	29913099	rs41553916	G	A	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	30859335	.	A	T	894.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=33.31;MQRankSum=-4.745;QD=17.90;ReadPosRankSum=2.943;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:6,44:0.88:50
chr6	31113030	rs3132539	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.25;QD=28.10;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	31113149	rs112320574	T	A	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.01;QD=27.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	31129642	rs2073722	A	G	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.64;QD=24.93;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	32489578	.	C	CCTCTCT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=1.013;QD=3.97;ReadPosRankSum=-1.388;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr6	32489588	.	T	TCTCTCTCA	1121.73	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr6	32551794	.	TCACACA	T,TCA	2585.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=84;set=Intersection	GT:AF:DP	1/2:0.24,0.76:66
chr6	32551955	.	G	GCT	11748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-14.713;QD=19.10;ReadPosRankSum=2.625;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:320,295:0.48:615
chr6	32551958	rs1064592	C	T	11779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-15.108;QD=18.70;ReadPosRankSum=3.591;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:327,303:0.48:630
chr6	32551960	.	TGC	T	12430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-15.186;QD=19.61;ReadPosRankSum=4.267;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:331,303:0.48:634
chr6	32551995	rs17853229	A	G	14343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.439;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-17.518;QD=20.20;ReadPosRankSum=4.316;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:345,365:0.51:710
chr6	32551999	rs17885129	TC	CT	14182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.908;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-17.773;QD=20.17;ReadPosRankSum=4.827;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:348,355:0.50:703
chr6	32552059	rs17883134	G	T	8594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-19.152;QD=14.16;ReadPosRankSum=0.024;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:365,242:0.40:607
chr6	32552067	rs17882603	C	T	8222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=5.177;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-19.799;QD=14.33;ReadPosRankSum=-1.598;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:353,221:0.39:574
chr6	32552081	rs11554462	A	G	7604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=4.486;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=19.850;QD=14.35;ReadPosRankSum=3.582;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:176,354:0.67:530
chr6	33541719	rs513349	A	G	14274.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr6	33542172	rs210136	A	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr6	33542478	rs210137	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	33553580	rs394199	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	33560896	rs210162	A	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr6	33561164	rs210163	C	T	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	33589332	rs55774724	C	T	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:57,146:0.72:203
chr6	33608379	rs4713647	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	33625592	rs3831080	CTG	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.540;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:92,20:0.18:112
chr6	33625600	rs3831079	GT	G	919.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,37:0.30:122
chr6	33641897	rs35595255	G	A	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:108,179:0.62:287
chr6	33644768	rs2068236	T	C	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	33644773	rs4713652	T	A	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	33646328	rs2274195	T	C	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr6	33647594	rs4713653	C	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	33647651	rs4713654	A	G	9887.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr6	33648228	rs2229638	C	T	9268.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	33651322	rs6915136	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	33653111	rs942637	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	33653486	rs12528378	G	A	6387.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:158,299:0.65:457
chr6	33654378	rs4640882	A	G	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	33660411	rs653536	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	33662667	rs684119	C	T	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	33702988	.	GG	CT	1072.77	.	AC=1;AF=0.500;AN=2;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr6	33703089	rs623813	C	T	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:146,262:0.64:408
chr6	33703230	rs545787	G	A	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	33768728	rs76801482	C	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:106,44:0.29:150
chr6	33768897	rs2281820	A	G	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:349,176:0.34:525
chr6	34003314	rs34906910	A	T	1198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=8.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=3.661;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:110,44:0.29:154
chr6	34003336	rs2451381	T	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=8.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=3.808;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:108,15:0.12:123
chr6	34003685	rs2228623	T	C	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:538,270:0.33:808
chr6	34008006	rs2229900	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:132,54:0.29:186
chr6	34026938	rs2451359	C	T	16416.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr6	34078463	rs744102	G	A	5352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=2.108;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:568,308:0.35:876
chr6	34212743	rs2780219	A	G	2548.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.727;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.27;ReadPosRankSum=-0.077;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:2,103:0.98:105
chr6	34213250	rs111748592	C	T	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:116,158:0.58:274
chr6	34213296	rs1150783	T	C	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	34214322	rs1150781	C	G	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:376,139:0.27:515
chr6	34214994	rs3997805	G	GTC	2060.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	34215221	rs928482	G	A	3819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.819;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:92,182:0.66:274
chr6	34389796	rs34411335	GA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=7.830;MLEAC=1;MLEAF=0.500;MQ=61.48;MQRankSum=1.812;QD=5.51;ReadPosRankSum=0.896;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	34508821	rs7751270	G	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,85:0.69:123
chr6	34512313	rs2233634	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr6	34664207	rs3800456	T	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=24.75;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	34725478	rs7743724	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.169;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr6	34725655	rs34594913	G	GTCA	6696.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	34725658	rs28398813	G	T	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	34735652	.	C	CT	357.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.516;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr6	34735676	rs3831083	C	CCTCAT	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	34735883	rs3736896	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	34738203	rs2038841	T	C	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	34741094	rs11968972	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	34741174	rs11968954	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:112,70:0.38:182
chr6	34759881	rs13215181	A	G	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=43.41;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	34759884	rs6934662	G	C	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=42.67;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	34759903	rs10525938	T	TGGCGGCGGCGGCGGCGGC	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=51.40;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	34759954	rs6457791	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=26.97;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	34760162	rs7769961	G	C	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	34760228	rs7769820	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	34789062	rs7764126	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.116;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:151,51:0.25:202
chr6	34791027	rs7774697	A	G	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	34802999	rs2296362	T	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:137,75:0.35:212
chr6	34803947	rs4259246	C	T	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:4,181:0.98:185
chr6	34804204	rs7761391	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	34823187	rs3734266	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	34824636	rs11755393	A	G	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	34826612	rs61732794	C	T	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:47,103:0.69:150
chr6	34827085	rs9469913	A	T	5137.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:128,238:0.65:366
chr6	34831856	rs13205210	T	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.181;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,46:0.40:116
chr6	34831866	rs3734264	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	34850660	rs4646933	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.279;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	34855748	rs1051115	G	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.299;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:145,50:0.26:195
chr6	34949607	rs2293242	C	T	4750.77	.	AC=1;AF=0.500;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	0/1:660,292:0.31:952
chr6	34950430	rs116093080	T	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,96:0.68:142
chr6	34950477	rs75616383	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:141,57:0.29:198
chr6	34962019	rs11755713	G	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	34977663	rs9380481	C	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=27.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	34977679	.	TAA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=31.096;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.000;QD=2.59;ReadPosRankSum=1.803;SOR=3.584;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	34977813	rs12661991	A	G	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-1.697;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:85,43:0.34:128
chr6	35027814	rs820086	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr6	35027927	rs820085	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	35046154	rs820100	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	35050417	rs76571262	A	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr6	35054185	rs13216424	G	A	5379.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:639,318:0.33:957
chr6	35056413	rs112702876	G	A	10819.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:254,506:0.67:760
chr6	35056443	rs2005	A	G	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr6	35058117	rs707968	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	35085104	rs16871728	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:165,73:0.31:238
chr6	35085234	rs75751758	G	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.098;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:82,37:0.31:119
chr6	35086073	rs112605593	T	G	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:78,130:0.62:208
chr6	35086272	rs2234051	C	T	4828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=1.084;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:64,120:0.65:184
chr6	35086275	rs115171214	T	C	4834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.56;ReadPosRankSum=1.475;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:61,121:0.66:182
chr6	35086394	rs41270050	C	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	35088381	rs2234045	C	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,78:0.42:185
chr6	35088855	rs13203612	C	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:116,53:0.31:169
chr6	35088949	rs13206654	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.735;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr6	35088956	rs2494096	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	35090097	rs2234044	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:93,48:0.34:141
chr6	35107682	rs3777748	T	A	384.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	35107774	rs34103100	A	T	3227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-1.054;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:192,91:0.32:283
chr6	35107781	rs34715060	G	A	3359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.579;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:212,100:0.32:312
chr6	35108553	rs35693439	T	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.335;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:145,58:0.29:203
chr6	35109095	rs78614904	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-3.891;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr6	35109157	rs111624231	C	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=1.477;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr6	35182095	.	C	CCCCCT	296.70	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	35205541	rs1929849	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr6	35205881	rs734538	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr6	35209544	rs74734023	G	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr6	35258539	rs763157	C	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr6	35260266	rs111486721	CT	C	2460.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr6	35260700	rs35582935	G	A	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.421;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:436,163:0.27:599
chr6	35263241	rs16874216	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr6	35265535	rs45482297	G	A	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:82,223:0.73:305
chr6	35280207	rs146706360	C	A	3908.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:95,182:0.66:277
chr6	35285720	rs2395617	A	C	6902.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:230,342:0.60:572
chr6	35286333	rs150278765	A	C	319.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=-0.921;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr6	35287811	rs114708018	G	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-1.082;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr6	35378761	rs9658133	C	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,93:0.70:132
chr6	35378778	rs2016520	C	T	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	35423489	rs7757405	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	35423662	rs4713867	A	C	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	35424188	rs3800377	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	35424268	rs4713868	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	35436195	rs41271257	G	A	8209.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr6	35438569	rs6937124	C	T	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr6	35442997	rs41270072	C	T	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	35443042	.	C	T	490.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	35443835	rs35080860	G	A	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr6	35444328	rs34933048	CT	C	227.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	35445211	rs3215481	GC	G	3587.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	35446361	rs373948356	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:143,64:0.31:207
chr6	35448189	rs760782	T	C	13948.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr6	35452346	rs11756089	C	T	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:83,171:0.67:254
chr6	35477025	rs2064318	C	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:232,110:0.32:342
chr6	35477303	rs9296155	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr6	35479574	rs7764472	G	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	35479876	rs2273003	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.245;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	35480262	rs1540910	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	35480524	.	C	CG	6890.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DP=939;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.787;QD=7.59;ReadPosRankSum=3.772;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:692,216:0.24:908
chr6	35480525	rs2273004	A	G	6889.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.453;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.803;QD=7.55;ReadPosRankSum=4.176;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:698,214:0.23:912
chr6	35480526	rs201979805	CTCCCCAT	C	6868.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.645;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.825;QD=7.50;ReadPosRankSum=4.548;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:705,211:0.23:916
chr6	35544942	rs34866878	G	A	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.039;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:170,61:0.26:231
chr6	35555056	rs73746494	T	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	35610340	rs12110366	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	35610681	rs2143404	T	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	35705892	rs2817041	T	C	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	35706061	.	GGT	G	176.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.417;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	35706062	rs371929037	GT	G	120.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.103;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	35715303	rs2252881	G	C	10266.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr6	35744303	rs2766578	C	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.81;ReadPosRankSum=-0.966;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	35745655	rs2478467	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	35747108	rs6910332	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr6	35748931	rs34109614	T	C	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=1.229;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:35,88:0.72:123
chr6	35749059	rs2766579	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr6	35755547	rs6927363	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr6	35755658	rs12211728	A	G	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:80,165:0.67:245
chr6	35755796	rs201201980	CCTT	C	2080.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:176,64:0.27:240
chr6	35763712	rs116422628	A	C	5992.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:183,287:0.61:470
chr6	35765068	rs3748050	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.311;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:101,38:0.27:139
chr6	35765151	rs3748049	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	35803192	rs1049649	C	A	8702.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.53;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr6	35803283	rs2859420	C	T	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=24.02;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	35810503	rs3213580	T	A	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	35836705	rs9296168	T	C	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	35872860	rs9470167	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	35888067	rs662713	G	C	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	35923246	rs2295852	T	C	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.101;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:177,103:0.37:280
chr6	35943269	rs77820058	T	C	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.587;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:384,150:0.28:534
chr6	35943339	rs111959068	G	GTT	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.682;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:131,77:0.37:208
chr6	35945219	.	CT	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.225;QD=2.47;ReadPosRankSum=-0.981;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr6	35979858	rs58604706	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	35980121	rs743923	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:179,88:0.33:267
chr6	35987507	rs584884	C	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr6	35992332	rs9368897	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr6	36027142	rs3730327	A	G	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:50,85:0.63:135
chr6	36044225	rs3730366	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr6	36068041	rs2815805	T	C	5030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-2.108;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:507,301:0.37:808
chr6	36070227	rs16884857	G	T	109.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.31;ReadPosRankSum=0.674;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	36076280	rs6457878	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr6	36098333	rs12191295	T	C	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	36098410	rs1059227	A	C	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.405;QD=5.67;ReadPosRankSum=-0.497;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:295,154:0.34:449
chr6	36098497	rs146539855	T	TGGGGGGC	1667.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:87,49:0.36:136
chr6	36103921	rs2252430	G	A	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	36104430	rs55732669	T	C	9728.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:262,471:0.64:733
chr6	36106574	rs114316764	G	T	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:420,192:0.31:612
chr6	36106919	rs115524188	C	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,21:0.27:79
chr6	36189887	rs2301422	C	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	36190058	rs115842532	C	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr6	36190156	rs2157317	C	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	36260858	rs2239795	C	T	5047.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:119,235:0.66:354
chr6	36261008	rs77964096	A	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr6	36261885	rs4713949	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	36262991	rs4713951	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	36275458	rs4713956	T	C	5783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.567;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:157,278:0.64:435
chr6	36294915	rs6923009	T	A	12820.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr6	36322547	rs142291137	TAAC	T	251.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	36341153	rs73407000	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr6	36341243	rs60760162	T	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.547;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:88,56:0.39:144
chr6	36343573	rs2234078	G	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:133,68:0.34:201
chr6	36353169	rs6901513	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	36353268	rs150316656	ATT	A	3116.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr6	36355372	rs2234071	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.882;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr6	36355453	rs2234070	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	36359695	rs147244815	TTTA	T	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.938;QD=6.24;ReadPosRankSum=-0.070;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	36393582	.	A	AC	688.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=0.940;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr6	36393583	.	ATATAT	A	814.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=0.978;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr6	36393590	rs113872867	T	A	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=0.360;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	36393592	.	T	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=3.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.43;ReadPosRankSum=0.369;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	36393594	rs201851804	T	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=0.888;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	36393816	rs664370	A	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:35,121:0.78:156
chr6	36446975	rs2239808	G	C	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:97,153:0.61:250
chr6	36447287	rs2239807	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr6	36452603	rs11450552	T	TA	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=3.407;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:71,49:0.41:120
chr6	36465715	rs147832342	CTT	C	930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.897;QD=11.35;ReadPosRankSum=0.192;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:31,51:0.62:82
chr6	36467791	rs659726	C	G	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:56,127:0.69:183
chr6	36475200	rs16888690	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	36492269	rs3752479	C	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chr6	36492375	rs3752478	T	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	36493265	rs605684	T	C	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:70,104:0.60:174
chr6	36493330	rs6927896	C	T	3028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=2.357;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:121,153:0.56:274
chr6	36508036	rs6913714	G	T	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:55,128:0.70:183
chr6	36569717	rs58662018	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.325;QD=1.89;ReadPosRankSum=0.832;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	36645588	rs762624	A	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:134,68:0.34:202
chr6	36645696	rs2395655	A	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	36651971	rs1801270	C	A	6140.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:154,285:0.65:439
chr6	36652339	rs3176352	C	G	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	36653597	rs1059234	C	T	6570.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:189,328:0.63:517
chr6	36671957	rs77985524	G	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,64:0.60:107
chr6	36681832	rs6916443	C	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr6	36686272	rs236487	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr6	36686407	rs236486	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.739;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:65,29:0.31:94
chr6	36688962	rs145193181	C	CAGGCTGCCTCCCCTGAGA,CAGGCTGCCTCCCCTGAGG	10022.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.02;MQRankSum=0.000;QD=31.52;ReadPosRankSum=-1.179;SOR=0.700;set=HC	GT:AD:AF:DP	1/2:4,124,190:0.39,0.60:318
chr6	36689030	rs236478	A	C	12099.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.77;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr6	36689198	rs75667310	T	A	8585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.992;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:244,403:0.62:647
chr6	36689821	.	C	CGGGCCCAGCGGTGCAGGA	670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=7.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.037;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:97,23:0.19:120
chr6	36689961	rs183541	A	C	16041.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr6	36690274	rs7772906	G	A	3270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.617;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:415,195:0.32:610
chr6	36695519	rs236472	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr6	36695661	rs236471	A	C	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	36696330	rs236470	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	36698285	rs190201	G	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	36698294	rs236462	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.63;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	36698556	rs57522248	AC	A	3720.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	36698561	rs13199451	C	A	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	36711406	rs3213534	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:99,64:0.39:163
chr6	36712132	rs743869	G	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:60,119:0.66:179
chr6	36712962	rs743870	C	T	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:170,90:0.35:260
chr6	36713263	rs763046	A	G	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	36714139	rs3213535	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	36714491	rs929051	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr6	36715833	rs1010790	A	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	36715921	rs3213537	C	T	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:131,208:0.61:339
chr6	36723884	rs236443	C	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:32,8:0.20:40
chr6	36733132	rs763048	G	A	5465.77	.	AC=1;AF=0.500;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	0/1:651,323:0.33:974
chr6	36742721	rs112009658	A	T	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:75,122:0.62:197
chr6	36742882	rs372576700	A	G	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr6	36759741	rs9366916	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	36766204	rs11963339	T	G	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:154,206:0.57:360
chr6	36766279	rs6941005	G	A	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:80,98:0.55:178
chr6	36766292	rs6940728	C	T	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:3,157:0.98:160
chr6	36767920	rs11419511	T	TG	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	36824455	rs183778902	G	A	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:90,168:0.65:258
chr6	36842427	rs2303993	C	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.63;ReadPosRankSum=-1.570;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr6	36842429	rs145636632	G	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.95;ReadPosRankSum=-1.380;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	36853685	rs11461876	G	GC	96	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	36853786	rs11461877	A	AG	2864.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	36853857	rs5875560	T	TCGC	7231.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr6	36882353	rs2272275	A	G	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:63,94:0.60:157
chr6	36887308	rs2272276	G	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:34,95:0.74:129
chr6	36887498	rs373540885	G	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr6	36922385	rs1405070	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	36936606	rs697750	T	C	8730.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:181,418:0.70:599
chr6	36944495	rs708007	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	36949527	rs2293390	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr6	36976901	rs6927538	C	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr6	36978745	rs1724088	G	A	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:473,271:0.36:744
chr6	36978834	rs1753288	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:236,97:0.29:333
chr6	36978879	rs1724087	T	C	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	36982309	rs75479065	C	CT	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.434;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr6	36982947	rs831494	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	36988364	rs831504	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	36988664	.	A	ATGTGTGTG,ATGTGTGTGTG	1440.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=43;set=Intersection	GT:AF:DP	1/2:0.56,0.44:34
chr6	36989391	rs831502	G	C	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr6	36990736	rs831499	T	C	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr6	36995222	rs2274587	G	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.302;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:218,76:0.26:294
chr6	37138023	rs59116171	GGCA	G	4705.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	37138220	rs262936	C	G	14894.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr6	37139322	rs262938	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	37140670	rs71773641	AT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.859;QD=0.96;ReadPosRankSum=1.988;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr6	37180237	rs1224329	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	37180523	rs1150790	A	G	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	37250112	rs195753	A	G	12234.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr6	37252210	rs3818136	C	T	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	37280844	rs149708	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	37321807	rs195420	C	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-1.002;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr6	37328215	rs60123670	C	CT	17279.73	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr6	37328399	rs34469147	CT	C	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.572;QD=11.08;ReadPosRankSum=-0.424;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:11,46:0.81:57
chr6	37344837	.	CTTTTTTTT	C	130.75	.	AC=1;AF=0.500;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.34;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	37348920	rs2284923	C	T	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	37349033	rs2284922	G	A	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.186;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:189,77:0.29:266
chr6	37447075	rs2797790	G	A	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	37450340	.	C	A	5763.77	.	AC=1;AF=0.500;AN=2;DP=395;set=Intersection	GT:AD:AF:DP	0/1:126,263:0.68:389
chr6	37450914	rs10692	T	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	37475485	.	G	GTGGTGGTGGGGGGTGGGGGTAGGTGGTGGTGGGGGGTGGGGGGTAGA	1257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-3.062;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:91,50:0.35:141
chr6	37501967	rs2797786	A	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	37502110	rs62406767	C	G	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr6	37503233	rs868870	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=10.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.648;SOR=3.223;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr6	37522966	rs6942122	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	37606305	rs3818020	G	A	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:107,164:0.61:271
chr6	37611796	rs45511994	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	37613592	rs804858	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr6	37615258	rs6901281	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	37617519	rs708022	A	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.03;ReadPosRankSum=0.196;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr6	37617529	rs708021	T	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.18;ReadPosRankSum=-0.871;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr6	37617569	rs708020	C	T	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.104;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr6	37617892	rs804815	G	A	6109.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:120,290:0.71:410
chr6	37618202	rs804816	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr6	37620129	rs2273109	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:132,65:0.33:197
chr6	37623566	rs3846874	C	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:224,95:0.30:319
chr6	37664482	rs45627433	CG	GC	6746.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,165:0.69:238
chr6	38147355	rs6458044	A	G	5618.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:148,268:0.64:416
chr6	38312936	rs28360643	A	G	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:86,152:0.64:238
chr6	38455368	rs113789617	CGA	C	454.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.75;ReadPosRankSum=-0.656;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr6	38472125	rs9380754	GG	CT	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	38472176	rs73426901	A	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr6	38560215	rs2180106	T	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr6	38560242	rs73733941	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr6	38644907	rs16890915	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	38654488	rs3778443	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	38670837	rs1049346	G	A	12145.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr6	38697844	rs12212784	T	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	38702111	.	C	CA	60.87	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	38702169	rs74904743	C	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.015;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	38750740	rs73420237	A	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	38751047	rs76934040	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	38754502	rs1678666	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.799;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr6	38757378	rs7756191	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	38759379	rs1678674	G	A	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.568;QD=4.98;ReadPosRankSum=-0.163;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:204,94:0.32:298
chr6	38773172	rs1678682	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	38773293	rs874808	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr6	38775336	rs1738229	T	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr6	38781866	rs1678690	C	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-2.448;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr6	38781931	rs1738221	A	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.509;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	38791555	rs1738210	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	38793812	rs1738208	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr6	38794183	rs34231573	A	AT	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.925;QD=8.99;ReadPosRankSum=-0.870;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	38800209	rs1678729	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr6	38810313	rs1678737	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.58;ReadPosRankSum=-1.710;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	38816574	rs1678744	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr6	38820544	rs1678746	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chr6	38820887	.	ATT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=0.431;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr6	38850809	rs862432	C	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.658;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr6	38873960	rs7750330	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=1.923;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr6	38877605	rs4714198	C	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.314;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr6	38882942	rs9296267	T	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr6	38885010	rs11291395	TA	T	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	38897453	rs376615002	TA	T	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.360;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=3.047;QD=3.15;ReadPosRankSum=2.539;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:52,34:0.40:86
chr6	38897465	rs200696610	AAAAG	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=-1.848;QD=1.88;ReadPosRankSum=2.199;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr6	38899485	rs9296268	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	38941611	rs4711567	C	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:70,115:0.62:185
chr6	38952246	.	G	GCA	103.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr6	38952287	rs35676616	G	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	38957771	rs3737095	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	38957853	rs3737094	A	G	8056.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	38976849	rs28360624	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.53;ReadPosRankSum=0.210;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr6	38979946	rs9296273	T	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	38980081	rs10484847	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.572;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:89,46:0.34:135
chr6	39024448	rs10305438	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr6	39033602	rs6918287	A	G	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr6	39033739	rs10305454	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr6	39034126	rs10305458	C	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:165,75:0.31:240
chr6	39040701	rs10305475	A	G	10172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=1.929;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:242,492:0.67:734
chr6	39041502	rs1042044	A	C	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	39041693	rs10305478	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr6	39048491	rs1126476	A	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.257;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr6	39053719	rs10305510	G	A	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:119,196:0.62:315
chr6	39162206	rs2815098	A	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	39162227	rs1541816	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr6	39278848	rs72125468	GCACACACACACACACACA	G	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	39282036	rs10947804	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr6	39282748	rs11756070	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-2.387;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:120,26:0.18:146
chr6	39282806	rs11756091	G	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:119,49:0.29:168
chr6	39283083	rs11753141	G	A	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-2.412;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:375,184:0.33:559
chr6	39284050	rs1535500	G	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr6	39284184	rs3734618	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:101,48:0.32:149
chr6	39313618	rs34799567	G	GA	1985.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:154,67:0.30:221
chr6	39325078	rs20455	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr6	39330180	rs45460596	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr6	39545689	rs12697946	T	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr6	39585399	rs2466406	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.09;ReadPosRankSum=0.210;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	39602505	rs62403326	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	39682367	rs303701	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:127,43:0.25:170
chr6	39828593	rs2504099	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr6	39828862	rs2504098	A	C	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:135,70:0.34:205
chr6	39832111	rs2504787	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr6	39832363	rs2504094	C	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	39832964	rs2504093	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	39836575	rs76118566	G	A	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:72,167:0.70:239
chr6	39839164	rs2504088	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	39846137	rs2504086	A	G	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr6	39851679	rs2504082	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr6	39851818	rs3003929	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:106,43:0.29:149
chr6	39855112	rs3003945	T	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	39855288	rs35383047	C	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:91,126:0.58:217
chr6	39855427	rs3008810	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=1.272;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr6	39855490	rs5875688	C	CTGGA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-2.029;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	39859387	rs7740344	G	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr6	39859667	rs7760703	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	39864557	rs9380909	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr6	39865047	rs3004067	T	C	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr6	39866805	rs3830992	A	AACAATGGGC	4917.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr6	39867725	.	G	GGA	1953.73	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr6	39867729	.	T	G	2121.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.905;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.633;QD=29.47;ReadPosRankSum=-0.575;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:22,50:0.69:72
chr6	39867730	.	G	GGAA	2103.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.664;QD=28.43;ReadPosRankSum=0.023;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr6	39867732	.	AGGGTGTT	A	2244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.876;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=10.080;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.765;QD=26.10;ReadPosRankSum=1.202;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr6	39867743	rs199872620	T	TG	2493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=14.033;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.771;QD=25.98;ReadPosRankSum=0.599;SOR=2.045;set=HC	GT:AD:AF:DP	0/1:37,59:0.61:96
chr6	39867745	rs59308320	T	A	2530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=13.993;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.762;QD=25.31;ReadPosRankSum=0.547;SOR=2.075;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr6	39867747	rs57892114	C	CT	2507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.379;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=15.580;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.787;QD=24.11;ReadPosRankSum=0.978;SOR=2.064;set=HC	GT:AD:AF:DP	0/1:41,63:0.61:104
chr6	39869066	rs882559	G	C	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:89,137:0.61:226
chr6	39873309	rs11968491	G	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:137,57:0.29:194
chr6	39873595	rs138907488	T	TCAGGA	2938.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:19,77:0.80:96
chr6	39881120	rs35825585	G	A	6817.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:162,317:0.66:479
chr6	39883802	rs34757428	A	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	39895410	rs3008822	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	40360465	rs3734557	A	G	10735.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr6	40399446	rs7775772	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,64:0.39:166
chr6	40400823	rs61731039	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,56:0.38:148
chr6	41010432	rs138487461	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr6	41020205	rs6939989	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr6	41029530	rs114127156	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr6	41036770	rs2294695	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr6	41037778	rs2272986	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:96,50:0.34:146
chr6	41038845	rs13191323	C	T	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.799;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:249,93:0.27:342
chr6	41052002	rs6908595	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	41057805	rs145381934	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr6	41059169	rs10080924	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	41059458	rs12189627	T	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:73,35:0.32:108
chr6	41065290	rs114634567	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.825;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr6	41100861	rs6911977	C	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.731;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr6	41126655	rs2234256	A	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:233,105:0.31:338
chr6	41129105	rs2234253	G	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:327,158:0.33:485
chr6	41129394	rs2234251	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:100,33:0.25:133
chr6	41130693	rs2234250	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:101,55:0.35:156
chr6	41166017	rs77093113	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-18.185;QD=0.24;ReadPosRankSum=1.674;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:401,59:0.13:460
chr6	41166036	rs66965554	ACTT	A	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=3.550;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-20.649;QD=0.74;ReadPosRankSum=-1.886;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:452,42:0.09:494
chr6	41196065	rs2803495	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.107;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr6	41196104	rs10700462	C	CCTT	4448.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	41196156	rs2803496	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	41196604	rs80325844	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr6	41198758	rs2803500	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:125,63:0.34:188
chr6	41200293	rs12526284	T	C	276.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.45;ReadPosRankSum=-0.086;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr6	41250466	rs2234237	T	A	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:95,129:0.58:224
chr6	41250594	rs2234236	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	41250609	rs12524876	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	41303592	rs9394782	T	C	12021.77	.	AC=1;AF=0.500;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	0/1:319,586:0.65:905
chr6	41303995	rs9471577	A	G	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:83,129:0.61:212
chr6	41304241	rs9471578	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr6	41309831	rs666007	G	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:359,215:0.37:574
chr6	41318424	rs2273961	T	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr6	41318438	rs2273962	A	G	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr6	41533579	rs2104506	C	A	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:56,177:0.76:233
chr6	41537817	.	G	GACAC	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.90;ReadPosRankSum=-0.356;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	41552429	rs4714489	G	A	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr6	41557647	rs114305705	C	A	12924.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:252,594:0.70:846
chr6	41562530	rs9367109	A	G	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	41565472	rs1887079	C	T	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,99:0.63:158
chr6	41566413	rs148384824	G	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.06;ReadPosRankSum=1.105;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	41566509	rs77674981	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr6	41613772	rs7763699	A	G	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:40,75:0.65:115
chr6	41620975	rs2842657	A	G	10876.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-0.652;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:2,422:1.00:424
chr6	41621005	rs2235838	C	T	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.066;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:485,246:0.34:731
chr6	41621262	rs73735911	G	A	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:103,196:0.66:299
chr6	41621387	rs74973041	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr6	41652604	rs1062966	T	C	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,104:0.71:146
chr6	41655005	rs2073157	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	41691126	rs73733005	C	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr6	41691352	rs73733006	T	C	3923.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:68,181:0.73:249
chr6	41691488	rs11963156	C	A	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.99;ReadPosRankSum=-0.149;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:32,92:0.74:124
chr6	41691494	rs11963158	C	T	3651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.21;ReadPosRankSum=-0.282;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:33,92:0.74:125
chr6	41691666	rs11963191	C	G	8054.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:241,389:0.62:630
chr6	41691782	rs73733007	G	A	5660.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:148,270:0.65:418
chr6	41705612	rs3804279	G	A	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:70,150:0.68:220
chr6	41708664	rs1316979	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr6	41709996	rs73733016	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr6	41711049	rs146003555	C	G	7060.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:142,326:0.70:468
chr6	41721682	rs59644697	G	GT	3091.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:67,99:0.60:166
chr6	41740483	.	C	CGTGTGT,CGT	254.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=13;set=Intersection	GT:AF:DP	0/1:0.50:10
chr6	41748279	rs10947986	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	41751337	rs139498631	T	C	7950.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:170,372:0.69:542
chr6	41753380	rs3747753	G	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr6	41754573	rs140326303	C	CCTT	17088.73	.	AC=1;AF=0.500;AN=2;DB;DP=706;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:238,426:0.64:664
chr6	41773576	rs2185798	G	C	8231.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:170,376:0.69:546
chr6	41773735	rs6926173	G	A	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.137;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:372,184:0.33:556
chr6	41885753	.	CA	C	138.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	41888827	rs2274578	C	G	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	41898096	rs2479726	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	41899629	rs16895095	G	A	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:46,145:0.76:191
chr6	41903782	rs1051130	A	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	41903884	rs3218101	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr6	41905154	rs3218098	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:30,76:0.72:106
chr6	41905174	rs2479717	T	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	41908702	rs377533687	G	C	9336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.334;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:240,466:0.66:706
chr6	42023521	rs9471746	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr6	42036395	rs2492926	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr6	42044945	rs3800286	G	A	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	42045364	rs73735020	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr6	42045371	rs113275759	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr6	42072989	rs9394863	G	A	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:345,164:0.32:509
chr6	42073958	rs9394865	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:182,76:0.29:258
chr6	42074106	rs9394866	A	G	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:126,61:0.33:187
chr6	42075069	rs55772414	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.442;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr6	42075377	rs9394868	A	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr6	42094699	rs6940849	G	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr6	42096677	rs55818426	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.65;ReadPosRankSum=-0.744;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	42110171	rs9688934	C	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.450;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr6	42110263	rs6911399	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	42130904	rs114531372	G	T	6717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=1268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-1.640;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:842,409:0.33:1251
chr6	42141269	rs9471793	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr6	42141326	rs6937603	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	42146298	rs1467448	G	C	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr6	42146885	rs76128208	G	A	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:50,159:0.76:209
chr6	42153609	rs9471799	C	T	9920.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr6	42154104	rs6909313	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	42155611	rs9462780	T	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr6	42155666	rs9462781	C	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr6	42155930	rs9462782	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr6	42156031	rs151241798	CGTGTGTGTGTGTGTGT	C	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.21;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	42162575	rs1474867	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	42176451	rs6936290	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr6	42176744	rs7771519	G	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	42182183	rs1884317	C	T	131.41	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	42185564	rs9471809	A	C	10063.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:209,480:0.70:689
chr6	42185712	rs9471810	A	T	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr6	42196212	rs7744694	A	G	4924.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:107,238:0.69:345
chr6	42210936	rs3830886	T	TG	1892.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr6	42210951	rs2295276	C	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,84:0.68:123
chr6	42231410	rs115937608	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr6	42231419	rs3800289	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr6	42232475	rs2295274	G	A	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:89,152:0.63:241
chr6	42233414	rs16895477	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:121,44:0.27:165
chr6	42233599	rs75701593	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr6	42235843	rs77165586	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	42532102	rs3749897	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr6	42541802	rs16895843	G	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	42571346	rs16895863	A	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.164;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr6	42587187	.	ATATATT	A	83	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	42600319	rs5014584	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	42600674	rs368420871	CT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=1.095;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	42602189	.	TTTTA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.692;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr6	42607841	rs12204274	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	42608122	rs373742087	GT	G	417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.693;QD=24.57;ReadPosRankSum=0.397;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	42608124	.	GTGTGTGTGTGTGTGT	G	417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.693;QD=24.57;ReadPosRankSum=0.453;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	42611872	rs12198323	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=-0.311;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	42612312	rs7767888	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	42613379	rs3749900	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr6	42615950	rs2273176	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr6	42626341	rs7748447	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr6	42627258	rs67388762	TACACACAC	TAC,T	782.74	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:0.95:21
chr6	42627266	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.770;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	42627430	rs6916713	C	T	3076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.926;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:180,87:0.33:267
chr6	42627434	rs6917033	G	A	3070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.613;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:189,89:0.32:278
chr6	42633368	rs16895923	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-1.846;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr6	42638354	rs3835247	TACATA	T	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr6	42638564	rs4460209	T	C	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:98,61:0.38:159
chr6	42641704	rs761537	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	42644623	rs2038261	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.098;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr6	42650766	rs34240626	G	GT	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	42652667	rs434505	G	A	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	42658752	rs373341	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	42666020	rs361524	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr6	42666061	rs434102	T	C	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	42666145	rs425876	C	T	15540.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:2,586:1.00:588
chr6	42666164	rs390659	G	C	17933.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr6	42666293	rs41273820	G	A	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:101,213:0.68:314
chr6	42666365	rs389999	G	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	42672416	rs3818086	A	T	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	42689411	rs6928781	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr6	42689755	rs7764439	A	G	14394.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:1,550:1.00:551
chr6	42712794	rs150901240	C	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,102:0.64:159
chr6	42713618	rs2234026	A	G	12069.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr6	42713770	rs2234025	T	G	7673.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr6	42797777	.	A	G	2703.77	.	AC=1;AF=0.500;AN=2;DP=423;set=Intersection	GT:AD:AF:DP	0/1:264,150:0.36:414
chr6	42823529	rs9381223	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-2.229;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr6	42824756	rs9462840	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr6	42824907	rs9471932	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:204,77:0.27:281
chr6	42830484	rs10456518	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.178;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr6	42848886	.	G	T	1670.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr6	42851396	rs2395939	G	A	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	42853842	rs2179719	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	42883911	rs2235831	G	C	11308.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr6	42890602	rs9462851	A	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	42891022	rs9471966	G	A	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr6	42906241	rs116255295	GCT	ATA	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	42906384	rs9471969	G	T	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	42928461	rs10948059	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	42928758	rs2296805	T	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	42929839	rs7760250	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	42931224	rs4987173	G	A	10530.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr6	42931261	rs2296804	C	G	12373.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr6	42932200	rs1129187	G	T	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	42932200	.	GGC	TGT	2327	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=59.76;NF=31;NR=35;PP=2327;QD=36.0676950737;SC=TGAGCTACCTGGCTCCAGCCC;SbPval=0.51;Source=Platypus;TC=68;TCF=31;TCR=37;TR=66;WE=42932210;WS=42932190;set=Platypus	GT:AD:AF:DP	1/1:2,66:0.97:68
chr6	42932202	rs1129186	C	T	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	42932564	rs34551839	C	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:223,121:0.35:344
chr6	42932715	rs2274517	C	T	7954.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	42934500	rs2274514	C	T	17245.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,656:1.00:656
chr6	42934620	rs3818554	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	42935998	rs9471982	G	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	42936900	rs3805953	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	42942779	rs9986447	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	42946076	rs35503676	C	A	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.385;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:326,99:0.23:425
chr6	42946490	rs9462858	C	A	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	42946943	rs9462859	G	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	42974509	rs41274898	A	G	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr6	42975644	rs9462864	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr6	42975913	rs60380024	CAAGA	C	8304.73	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:155,211:0.58:366
chr6	42976232	rs6458318	T	G	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr6	42978326	rs2236356	G	A	7491.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:162,332:0.67:494
chr6	42985973	rs6926418	T	C	5645.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:152,260:0.63:412
chr6	42986363	rs6904371	C	T	6571.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:113,295:0.72:408
chr6	42988841	rs8540	C	T	7839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.843;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:286,383:0.57:669
chr6	42989057	rs9296409	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	42989413	rs200886831	CGCCGGG	C	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.98;ReadPosRankSum=-2.130;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr6	42989667	rs3833661	TG	T	87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	42992808	rs3749904	T	C	4407.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:106,209:0.66:315
chr6	42992825	rs3749903	C	G	5020.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:133,238:0.64:371
chr6	42995211	rs1138141	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr6	43008298	rs2273917	C	T	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:126,211:0.63:337
chr6	43014298	rs9394939	TT	CC	13498.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	43021976	rs34298469	CG	C	302.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-0.386;QD=16.82;ReadPosRankSum=0.676;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr6	43023097	.	G	GA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.135;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	43097443	rs45624340	G	C	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:60,115:0.66:175
chr6	43109751	rs6905948	G	A	9645.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr6	43110240	rs368318333	GGT	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.482;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:100,13:0.12:113
chr6	43112382	rs7759437	C	T	15455.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:2,598:1.00:600
chr6	43114211	rs60930750	C	CT	436.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	43146271	.	A	G	1094.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr6	43154091	rs941849	C	G	12052.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr6	43182657	rs1214714	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	43250387	rs6936397	G	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.955;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:99,48:0.33:147
chr6	43251280	.	G	A	8745.77	.	AC=1;AF=0.500;AN=2;DP=661;set=Intersection	GT:AD:AF:DP	0/1:229,410:0.64:639
chr6	43251912	rs3800297	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr6	43252029	rs3800298	T	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=5.203;QD=3.58;ReadPosRankSum=-0.068;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:165,57:0.26:222
chr6	43252107	rs11269387	G	GGAGGGGCTTCTCCAGAACCAAGGT	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=6.694;QD=3.41;ReadPosRankSum=0.922;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr6	43252141	rs7763131	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=3.847;QD=1.28;ReadPosRankSum=-0.270;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr6	43269453	rs147030892	G	A	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr6	43270097	rs2651184	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr6	43270326	rs2841646	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.78;ReadPosRankSum=-0.520;SOR=1.919;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	43275338	rs148395811	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	43306346	rs1459675	A	G	9329.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:209,431:0.67:640
chr6	43309955	rs112501444	TG	T	1657.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr6	43332905	rs57347041	T	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr6	43333285	rs73416716	C	T	518.22	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr6	43336771	rs9381238	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr6	43399837	rs700008	A	G	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.685;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:253,84:0.25:337
chr6	43403792	rs864392	G	C	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=0.356;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:136,65:0.32:201
chr6	43405665	rs831311	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:77,25:0.25:102
chr6	43410822	.	T	C	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.514;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:256,115:0.31:371
chr6	43414216	rs1214746	T	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr6	43414234	rs1214747	G	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	43416786	rs201656338	T	C	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:58,164:0.74:222
chr6	43418691	rs1214748	G	A	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr6	43418733	rs1214749	G	A	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	43469814	.	ACT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.146;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr6	43474912	rs2282412	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr6	43492578	rs2257082	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=1.905;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr6	43494319	rs1150800	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	43501580	rs11404474	C	CA	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	43514527	rs374970458	GA	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.148;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr6	43519012	.	T	C	785.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr6	43521263	.	TAC	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.901;QD=0.39;ReadPosRankSum=0.399;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:101,15:0.13:116
chr6	43523500	.	A	T	348.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr6	43638636	rs16896629	G	A	8034.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:186,377:0.67:563
chr6	43639708	rs113762333	G	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr6	43640039	rs41281838	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr6	43640064	rs2277124	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:96,82:0.46:178
chr6	43640099	rs2277125	A	G	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.233;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:82,87:0.51:169
chr6	43646401	rs2295948	A	G	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:40,93:0.70:133
chr6	43646447	rs2295949	T	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr6	43648988	rs2236346	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr6	43745107	rs3024997	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	43745452	rs3025046	C	G	2574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=3.175;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:60,119:0.66:179
chr6	43745577	rs3024998	C	T	2281.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.545;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.664;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=1.741;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:1,92:0.99:93
chr6	43748643	rs3025052	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	43970503	rs72369323	CGCG	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.061;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr6	44081718	rs6883	G	A	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr6	44081987	rs4711767	T	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	44102572	rs3841315	C	CT	21004.73	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr6	44104306	rs56168551	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr6	44107189	rs35174285	C	T	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:81,141:0.64:222
chr6	44107559	rs72858118	G	A	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:31,96:0.76:127
chr6	44108848	rs12528844	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:76,151:0.67:227
chr6	44109012	rs12529211	G	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	44120293	rs79582609	C	T	10481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-1.123;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:249,494:0.66:743
chr6	44121270	rs1041523	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	44121947	rs2277127	C	T	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:76,155:0.67:231
chr6	44122416	rs10537719	TCTC	T	1333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=0.260;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr6	44134581	rs914503	C	T	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	44140054	rs57288791	T	TGGCTGCC	1082.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:87,34:0.28:121
chr6	44140275	rs1418487	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	44141088	rs6938938	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:240,123:0.34:363
chr6	44143930	rs142573641	A	AGGAGGAGAACGTCTCCCTGACC	1692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.415;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=1.85;ReadPosRankSum=3.517;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:765,149:0.16:914
chr6	44149113	rs67257607	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.679;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr6	44149153	rs143990221	CCA	C	410.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.30;ReadPosRankSum=-0.125;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr6	44149188	.	A	T	396.31	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.03;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	44151490	rs7761137	G	A	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:240,139:0.37:379
chr6	44151765	rs13209117	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	44185254	rs3734701	T	C	5962.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	44185522	rs57595790	TC	GA	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	0/1:48,98:0.67:146
chr6	44199569	rs114905712	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr6	44216544	rs112518852	GT	G	4177.73	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:188,269:0.59:457
chr6	44217374	rs34083426	T	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:248,109:0.31:357
chr6	44218120	rs13296	A	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:5,217:0.98:222
chr6	44219710	rs2070695	A	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:134,85:0.39:219
chr6	44220076	rs504697	T	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	44221142	rs34776515	C	T	11048.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:160,285:0.64:445
chr6	44221145	rs148703092	GGAGTTTGT	G	11019.73	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:176,284:0.62:460
chr6	44222161	rs35131506	C	CTG	1281.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	44224924	rs575034	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=-0.524;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	44240193	rs571770	C	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	44240559	rs524533	C	T	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr6	44243559	rs3734710	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:195,109:0.36:304
chr6	44245930	rs325018	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:168,80:0.32:248
chr6	44246049	rs325017	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,26:0.29:89
chr6	44247951	rs484757	T	G	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:297,141:0.32:438
chr6	44250165	rs516582	A	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:271,142:0.34:413
chr6	44253617	rs324142	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.694;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr6	44253749	rs324143	A	G	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.747;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:111,45:0.29:156
chr6	44255459	rs324146	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:235,123:0.34:358
chr6	44268135	rs325009	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	44268371	rs325008	T	C	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.336;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:244,101:0.29:345
chr6	44269023	rs325007	T	C	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	0/1:641,281:0.30:922
chr6	44269193	rs498512	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:186,90:0.33:276
chr6	44269640	rs325006	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr6	44269680	rs325005	C	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr6	44269847	rs35783144	T	C	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:365,152:0.29:517
chr6	44270768	rs325002	G	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=9.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.522;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr6	44274797	rs7740535	T	C	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:314,150:0.32:464
chr6	44274958	rs78552484	G	A	10229.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:233,484:0.68:717
chr6	44275011	rs324136	T	C	4875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.059;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:576,299:0.34:875
chr6	44279111	rs9688508	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:119,62:0.34:181
chr6	44279309	rs41282672	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	44320548	rs4714783	T	A	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:181,103:0.36:284
chr6	44357884	rs6908640	T	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	44361100	.	A	C	670.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr6	44403438	rs67182313	A	G	1406.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.602;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-1.358;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr6	44797721	rs73735210	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr6	44921320	rs10948187	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	44988149	rs1475534	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	45333184	rs2295296	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	45405590	rs77780637	A	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	45870999	rs35735653	CAG	C	3495.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr6	45922796	rs74786400	G	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:111,86:0.44:197
chr6	45922849	rs3734206	C	T	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:118,202:0.63:320
chr6	46047640	rs723580	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:113,46:0.29:159
chr6	46107752	rs7451713	C	G	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:137,250:0.65:387
chr6	46108046	rs143515757	G	A	1810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.563;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:249,113:0.31:362
chr6	46129345	rs2235881	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:92,109:0.54:201
chr6	46135489	rs6926570	T	C	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:93,190:0.67:283
chr6	46135984	rs3806995	G	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:81,118:0.59:199
chr6	46521602	rs699939	C	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	46563817	rs7761731	A	T	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	46593079	rs75188028	G	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr6	46604000	rs3736737	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	46609905	rs2277119	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.250;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr6	46610098	rs140591185	T	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-3.050;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	46621097	rs8427	T	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,73:0.78:94
chr6	46623698	rs3757241	T	C	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	46626353	rs953062	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:91,33:0.27:124
chr6	46630068	rs9381469	G	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr6	46636556	.	G	GT	478.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr6	46649231	rs7740677	C	T	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr6	46656557	rs41273658	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:278,150:0.35:428
chr6	46657057	rs3799277	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	46658905	rs9381472	C	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.888;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:100,34:0.25:134
chr6	46661832	rs139947735	G	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr6	46661937	rs55724083	CT	C	40.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=5.75;ReadPosRankSum=1.068;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr6	46672215	.	TCACA	T	378.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.36;MQRankSum=0.223;QD=31.57;ReadPosRankSum=-1.552;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr6	46672943	rs1051931	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	46676019	rs2216465	C	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr6	46682079	rs1362931	A	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	46683978	rs41361844	T	TA	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	46684222	rs1805017	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:126,70:0.36:196
chr6	46717454	rs7766818	A	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	46719576	rs6901073	C	T	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	46726441	rs9395212	G	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	46726500	rs9472839	C	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	46761495	rs2274656	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	46793175	rs6920863	G	A	12242.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr6	46794048	rs2297018	C	G	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	46801071	rs2274658	G	T	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	46803102	rs2297019	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	46806621	rs147448211	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=0.967;QD=5.18;ReadPosRankSum=-2.074;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	46826022	rs148469784	T	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-0.312;QD=3.69;ReadPosRankSum=0.320;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:160,57:0.26:217
chr6	46826508	rs613870	G	A	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:355,157:0.31:512
chr6	46826715	rs572248	T	A	3740.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:527,231:0.30:758
chr6	46826844	rs571247	T	C	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:296,164:0.36:460
chr6	46826910	rs611779	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:174,96:0.36:270
chr6	46827126	rs610856	C	T	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.651;QD=4.46;ReadPosRankSum=0.852;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:224,93:0.29:317
chr6	46828670	rs540727	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	46831060	rs476374	C	T	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:258,150:0.37:408
chr6	46832741	rs529201	T	C	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr6	46834685	rs586024	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:150,74:0.33:224
chr6	46834906	rs5875987	TG	T	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr6	46836995	rs515866	T	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	46838659	rs10668775	T	TTG	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=38.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	46847501	rs2273265	T	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr6	46851171	rs113116270	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr6	46851511	rs145605310	C	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	46856100	rs678312	G	A	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	46867717	rs220702	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	46867846	rs148870592	T	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:73,128:0.64:201
chr6	46867898	rs3215601	TA	T	3876.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	46968168	rs819500	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	46973683	rs191956214	G	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,10:0.19:54
chr6	46974813	rs1226474	G	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr6	46976812	rs1226475	T	C	6440.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:128,295:0.70:423
chr6	46977458	rs937057	T	C	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:86,193:0.69:279
chr6	46982347	rs819492	C	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:24,86:0.78:110
chr6	46989848	rs1226491	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	46992058	rs1226489	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr6	46993747	rs3832434	GAGAA	G	2765.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr6	46996218	rs1226485	C	G	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	47220867	rs145308313	C	CGT	428.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	47253631	rs11758366	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	47445927	rs9349406	T	A	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:6,106:0.95:112
chr6	47522357	rs9473132	G	A	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-1.356;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:109,60:0.36:169
chr6	47547070	rs34735056	T	TAA	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=1.340;QD=13.44;ReadPosRankSum=-1.331;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr6	47563692	rs2039503	C	T	12847.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr6	47577064	rs9395287	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.430;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr6	47624239	rs1485784	A	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:77,125:0.62:202
chr6	47624299	rs9369730	A	G	5273.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:133,257:0.66:390
chr6	47626685	rs6935668	C	T	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr6	47626833	rs12201065	C	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr6	47626909	rs78902379	C	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	47641307	rs1411049	G	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr6	47645543	rs57588858	T	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:44,93:0.68:137
chr6	47645772	rs9369734	G	T	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	47646842	rs6907125	A	G	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:78,138:0.64:216
chr6	47649222	rs8180544	T	G	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:78,150:0.66:228
chr6	47649265	rs17541107	T	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:171,89:0.34:260
chr6	47649573	rs10807371	CA	TG	6094.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,150:0.71:211
chr6	47649694	rs9381594	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:70,125:0.64:195
chr6	47653536	rs9381596	A	G	764.82	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr6	47653812	rs60074575	TA	T	1024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.030;QD=17.98;ReadPosRankSum=0.250;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,43:0.75:57
chr6	47653851	rs9296570	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	47654591	rs10948376	G	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	47654662	rs10485315	A	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr6	47654742	rs9296573	A	T	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:68,145:0.68:213
chr6	47654817	rs1556133	C	A	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr6	47654831	rs1556132	A	G	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr6	47654864	rs1556131	T	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr6	47661387	rs9395311	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr6	47676150	rs9369737	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	47678455	rs11356177	CT	C	4453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.338;QD=13.37;ReadPosRankSum=1.823;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:102,231:0.69:333
chr6	47678678	rs944056	C	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	47681494	rs6916562	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	47682604	rs9369738	A	C	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	47684591	rs1360157	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:54,129:0.70:183
chr6	47684927	rs75142741	T	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:172,100:0.37:272
chr6	47686101	rs6914013	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	47686235	rs11754756	C	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:187,69:0.27:256
chr6	47749728	rs7741473	T	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	47754498	rs1329543	A	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	47754538	rs6900985	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr6	47847179	rs3799276	A	G	12195.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr6	47847401	rs2068006	A	G	9062.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr6	47847683	rs9367307	A	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	49403282	rs8589	T	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	49409487	rs9473555	G	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:73,32:0.30:105
chr6	49409737	rs9473557	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:85,24:0.22:109
chr6	49411477	rs7744595	G	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	49411619	rs6458690	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	49412275	rs9381786	T	G	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr6	49412433	rs1141321	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:164,73:0.31:237
chr6	49416733	rs11323898	AT	A	247.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	49421240	rs374178242	AG	A	536.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=-0.178;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr6	49421241	rs7769646	G	A	70.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.249;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr6	49421248	rs192976390	T	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=0.332;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr6	49425521	rs2229384	C	T	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	49437853	rs11333073	AT	A	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.156;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr6	49439805	rs4267943	G	A	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:404,204:0.34:608
chr6	49440363	rs4348317	C	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	49440599	rs7759308	T	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.600;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	49440614	rs4469291	A	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-2.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	49479775	rs1480615	A	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.713;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	49483578	rs113145900	A	ACTAT	1279.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr6	49485384	rs2501969	C	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	49494241	rs9367359	A	G	15744.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr6	49518599	rs45551532	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.456;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr6	49518874	rs191682924	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:196,135:0.41:331
chr6	49518914	rs6919674	C	G	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr6	49519169	rs41273692	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:167,120:0.42:287
chr6	49519279	rs41273694	G	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr6	49604663	rs188389777	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	49665730	rs41273696	A	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	49696473	rs488132	G	T	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:169,295:0.64:464
chr6	49700840	rs11343694	GT	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.73;ReadPosRankSum=-1.004;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	49701394	rs184193221	G	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:141,61:0.30:202
chr6	49701523	rs495335	A	G	11164.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,429:1.00:430
chr6	49705179	rs3216020	TG	T	4034.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:82,150:0.65:232
chr6	49815873	rs373553362	AT	A	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.762;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr6	49819672	rs6915063	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr6	49913981	rs7760672	C	T	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	49917264	rs9369926	A	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	49936364	rs79563352	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr6	50016409	.	ATTACT	A	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=1.897;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	50681660	rs35537220	AT	A	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr6	50681817	.	CTT	C	1180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.921;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:134,87:0.39:221
chr6	50683458	.	TCTCTCA	T	240	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=0.9994;HP=2;HapScore=2;MGOF=39;MMLQ=27;MQ=58.17;NF=1;NR=8;PP=240;QD=27.0;SC=TCTCTCTCTCTCTCTCACACA;SbPval=0.57;Source=Platypus;TC=11;TCF=1;TCR=10;TR=9;WE=50683471;WS=50683448;set=Platypus	GT:AD:AF:DP	1/1:2,9:0.82:11
chr6	50712784	rs3765306	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr6	50786571	rs2272903	G	A	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:78,93:0.54:171
chr6	50791584	rs71687472	CACAA	C	9534.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	50805942	rs2817404	T	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	51492046	rs9474033	T	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr6	51497315	rs377565628	CT	C	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr6	51497519	rs9474034	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr6	51546927	rs9474051	T	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr6	51586771	rs9349593	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:243,144:0.37:387
chr6	51611470	rs2397060	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-1.814;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr6	51612837	rs35445653	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.915;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:198,76:0.28:274
chr6	51617955	rs58823342	T	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.328;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:108,46:0.30:154
chr6	51618170	rs1326605	T	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr6	51637711	rs6922497	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=1.582;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr6	51640787	rs7775050	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr6	51656236	rs7765455	G	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr6	51695570	rs1571083	T	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.851;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr6	51695647	rs1571084	A	T	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.149;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:137,61:0.31:198
chr6	51701058	rs9474104	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.663;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr6	51774378	rs1266871	T	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr6	51777102	.	C	A	154.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	51875250	rs2435322	A	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	51914898	rs9395759	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	51924774	rs1896976	A	G	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	51929982	.	G	GAGAGAGAGAGAGAC	145.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.431;QD=24.29;ReadPosRankSum=0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	51938242	rs9474140	A	G	9616.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr6	51947237	rs9474143	G	A	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	52101739	rs763780	T	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr6	52131254	rs10807441	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	52132823	rs3827794	A	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr6	52132875	rs9463776	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	52138179	rs2076511	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-1.055;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:39,61:0.61:100
chr6	52148025	rs9474191	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr6	52268008	rs3748066	T	G	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	52269046	rs3799274	C	G	9085.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr6	52288586	rs62407871	G	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	52303291	rs3804506	C	T	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.174;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:330,123:0.27:453
chr6	52355206	rs2273120	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr6	52522089	rs72934796	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr6	52522199	rs73433304	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:337,131:0.28:468
chr6	52522308	rs72934798	G	A	6168.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:157,291:0.65:448
chr6	52548737	rs142249109	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	52615415	rs6577	T	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr6	52617731	rs2180314	C	G	6240.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:130,291:0.69:421
chr6	52620013	rs10626189	C	CT	90.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-0.000;QD=7.51;ReadPosRankSum=-0.091;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	52622814	rs2254050	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	52657552	rs4715326	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr6	52661253	rs70977384	CTATATATATATATATATATA	C	89.74	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-0.000;QD=22.43;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	52662263	rs2397106	C	T	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,85:0.69:123
chr6	52697825	rs4715345	A	C	5519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-3.073;QD=22.90;ReadPosRankSum=-1.010;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:94,147:0.61:241
chr6	52697834	rs4715346	C	A	5311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-2.910;QD=24.25;ReadPosRankSum=-0.523;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:88,131:0.60:219
chr6	52701143	rs2397118	C	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr6	52702324	rs4715350	T	C	11294.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr6	52767325	rs2281594	C	G	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.922;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:41,63:0.61:104
chr6	52768659	rs45439692	G	A	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:61,123:0.67:184
chr6	52858774	rs45571441	C	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,37:0.30:123
chr6	52858838	rs45504201	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:212,75:0.26:287
chr6	52878637	rs2297211	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:91,38:0.29:129
chr6	52896014	rs73443350	C	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr6	52897264	rs73443355	G	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.253;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr6	52902852	rs742343	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.16;ReadPosRankSum=0.722;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	52938468	rs5876299	AT	A	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr6	52941361	rs374648173	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=9.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-2.724;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr6	52943841	rs35757290	TA	T	1009.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr6	52958479	rs2816350	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	52962473	rs9474385	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr6	52962715	rs2744455	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	52963071	rs2876	A	G	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-1.678;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:52,84:0.62:136
chr6	52996748	rs375107584	C	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:100,44:0.31:144
chr6	52998788	rs2816346	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr6	52998834	rs2816345	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:41,85:0.67:126
chr6	52998856	rs2518573	T	G	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:76,160:0.68:236
chr6	53010182	rs9367511	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.097;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr6	53134104	rs3830806	C	CACAG	3589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.871;QD=22.72;ReadPosRankSum=-0.238;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:67,91:0.58:158
chr6	53134164	rs70980834	C	CCTTTT	1572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=-0.371;SOR=1.404;set=HC	GT:AD:AF:DP	0/1:23,40:0.63:63
chr6	53138203	rs35189966	TA	T	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.648;QD=4.94;ReadPosRankSum=-0.637;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	53138260	rs9463895	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	53139824	rs79238688	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	53140161	rs2294862	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	53140928	rs2294864	T	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr6	53152642	rs6458913	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr6	53152758	rs6907982	A	G	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:75,140:0.65:215
chr6	53152845	rs3817960	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr6	53156462	rs80236022	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr6	53156772	.	A	T	518.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr6	53160383	rs3736732	G	T	3443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.317;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:130,173:0.57:303
chr6	53365019	rs661346	G	C	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr6	53365374	rs2066511	C	T	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	53370107	rs661603	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	53370395	rs524553	C	T	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr6	53370752	rs1014852	A	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	53372145	rs1555903	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr6	53373624	rs3830795	G	GCTCCAC	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	53378861	rs11385177	A	AT	641.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	53379196	rs17880331	A	T	6586.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:185,315:0.63:500
chr6	53379405	rs3736729	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr6	53385475	rs2100375	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	53409451	rs146955698	C	CCCTCCT	855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.562;QD=9.61;ReadPosRankSum=1.592;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:63,26:0.29:89
chr6	53516876	rs6928338	T	G	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr6	53519062	rs10948758	A	G	14748.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr6	53519605	rs3799260	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	53520088	rs2038939	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	53520124	rs2038940	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	53707098	rs4286781	C	T	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:50,96:0.66:146
chr6	53764665	rs139964397	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:292,158:0.35:450
chr6	53778865	rs2820216	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.406;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:41,26:0.39:67
chr6	53784275	.	T	TTAA	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=14.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.663;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr6	53784293	.	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=24.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=5.412;SOR=3.119;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr6	53784552	rs16884465	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.906;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	53787585	rs61734465	T	G	4139.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:57,193:0.77:250
chr6	53847528	rs9370250	G	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	53847672	rs9370251	A	G	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	53883843	rs17625497	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr6	53883954	rs60586183	C	T	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:94,183:0.66:277
chr6	53989320	.	G	C	1643.77	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:204,100:0.33:304
chr6	53989526	rs4712056	G	A	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	54003184	rs2754780	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	54054686	rs6934690	T	A	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	54054837	rs9296739	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	54067088	rs67016420	AT	A	2534.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=35.20;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	54079968	rs11757700	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr6	54095423	rs816384	T	C	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	54130829	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=1.754;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr6	54186024	rs2297986	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:76,29:0.28:105
chr6	54186147	rs1058768	T	C	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr6	54191970	rs1848440	T	A	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	54208240	rs3777644	T	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=1.271;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr6	54735122	rs1472679	A	G	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:305,160:0.34:465
chr6	54735344	rs16886105	A	G	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:89,186:0.68:275
chr6	54792236	rs2746440	A	G	40.78	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	54805074	rs9475076	C	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:269,112:0.29:381
chr6	54805688	rs239798	A	C	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	54806489	rs9475077	C	A	10124.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr6	54806625	rs9464166	C	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:235,104:0.31:339
chr6	55105701	rs9357853	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr6	55113411	rs3122169	C	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	55119930	rs9475219	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.731;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr6	55120301	rs9475220	A	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	55142337	rs2653349	A	G	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.058;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:98,37:0.27:135
chr6	55215079	rs1032767	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	55216005	rs870806	G	A	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:66,104:0.61:170
chr6	55223981	.	TATC	T	33.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.25;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	55223984	.	C	CT	87	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=0.9999;HP=1;HapScore=2;MGOF=11;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=87;QD=33.0;SC=ATCTATCTATCATCTATCTAT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=55223992;WS=55223974;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr6	55264362	rs6936510	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr6	55266625	rs9370418	T	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr6	55266722	rs12529201	C	T	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=16.89;ReadPosRankSum=0.613;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:20,78:0.80:98
chr6	55300329	rs12332977	T	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr6	55300347	rs141031166	T	TC	1066.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	55300686	rs77744900	G	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	55381262	rs6459082	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr6	55428658	rs4398737	A	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	55428724	rs4398738	A	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	55428780	rs4398739	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	55442033	rs147198216	GATAGAAAAA	G	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	55623922	.	T	TAC	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=2.073;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	55739711	rs200061411	T	TA	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.404;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:43,50:0.54:93
chr6	55929347	rs2235735	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr6	55932035	rs138548441	A	AT	883.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.26;ReadPosRankSum=-0.837;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr6	55932036	rs62406152	C	T	892.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.49;ReadPosRankSum=-0.643;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr6	55932278	rs12209529	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr6	55933942	rs12189567	A	G	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:58,119:0.67:177
chr6	55933987	rs12189571	A	C	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr6	55942956	rs17218770	C	G	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:86,143:0.62:229
chr6	55943101	rs62404861	C	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	55966418	rs4379279	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	55988796	.	TTA	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=31;QD=40.640143618;SC=TACATTTTTCTTATGTTTCCT;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=55988805;WS=55988786;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr6	55988932	rs41271844	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr6	56006672	rs10807510	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr6	56044578	rs2038149	T	C	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:321,128:0.29:449
chr6	56047316	rs10484706	T	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr6	56047568	rs10484707	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	56333879	rs80134822	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	56335920	rs114094997	A	G	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:133,194:0.59:327
chr6	56365814	rs4283892	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	56366285	rs77434452	T	G	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=1.284;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:32,51:0.61:83
chr6	56366410	rs147983675	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.101;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:172,69:0.29:241
chr6	56417282	rs4715630	C	T	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	56418399	rs143438011	T	C	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:74,144:0.66:218
chr6	56420538	rs11756977	C	T	7147.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr6	56425284	rs2067543	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	56467586	rs11751914	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	56470289	rs76282567	T	C	7509.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	56472366	rs75788255	C	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	56476182	rs111382742	T	TAAGTA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.55;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	56482801	rs6459166	C	G	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	56483347	rs79943354	G	C	8804.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	56484543	rs78701610	G	A	15424.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr6	56491892	rs41271876	A	T	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	56493073	rs41271878	C	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	56496257	rs45553042	G	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	56499189	rs6941626	T	C	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	56505063	rs2144407	A	G	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr6	56507135	rs1024195	T	C	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	56507489	rs1024196	A	G	11141.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr6	56510526	rs7760503	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	56513331	rs58487319	T	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	56515740	.	T	A	2405.77	.	AC=1;AF=0.500;AN=2;DP=469;set=Intersection	GT:AD:AF:DP	0/1:316,150:0.32:466
chr6	56515787	rs41267673	G	A	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	56818706	rs986245	T	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	56873069	rs6925819	T	C	10594.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr6	56911574	rs9382680	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	56917538	rs6926980	G	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	56954840	rs115252582	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	56998023	rs3757296	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr6	57006933	rs2273921	T	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.918;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:145,69:0.32:214
chr6	57012930	rs3734738	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.927;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:102,31:0.23:133
chr6	57055354	rs1040461	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:207,106:0.34:313
chr6	57191021	rs11381745	A	AG	244.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	57244672	rs5011404	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr6	57244780	rs5011403	G	A	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.256;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:62,63:0.50:125
chr6	57244830	rs5011402	T	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-1.193;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr6	57244893	rs5011401	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.98;ReadPosRankSum=-1.655;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	57246697	rs9475907	T	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.531;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=1.573;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr6	57246773	rs113849959	T	TAGG	2556.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:124,63:0.34:187
chr6	57246785	rs62415470	A	C	3486.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:186,114:0.38:300
chr6	57246815	rs6936571	T	C	4822.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:293,241:0.45:534
chr6	57246884	rs6913546	A	G	8607.77	.	AC=1;AF=0.500;AN=2;DB;DP=923;set=Intersection	GT:AD:AF:DP	0/1:466,452:0.49:918
chr6	57246969	rs4256440	G	A	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:240,194:0.45:434
chr6	57246982	rs4585567	G	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:192,132:0.41:324
chr6	57247022	rs4382263	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:82,45:0.35:127
chr6	57254789	rs2397264	A	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,77:0.45:173
chr6	57254811	rs941685	A	G	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	57254839	rs2397265	T	C	4801.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:260,249:0.49:509
chr6	57254922	rs9475908	A	G	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.795;QD=1.37;ReadPosRankSum=-0.853;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:592,125:0.17:717
chr6	57254927	rs2397266	A	G	6544.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:363,323:0.47:686
chr6	57254950	rs5876554	A	AT	8473.73	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:260,225:0.46:485
chr6	57254955	rs2894842	G	A	8299.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:240,211:0.47:451
chr6	57254986	rs2397267	G	A	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:123,104:0.46:227
chr6	57255001	rs2894843	C	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chr6	57255015	rs2894844	G	C	1150.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr6	57255016	rs5876555	A	AC	1141.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,33:0.33:100
chr6	57255032	rs7769711	C	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr6	57372104	rs2024986	T	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.578;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.677;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr6	57372116	rs9382768	T	C	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=-0.267;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr6	57372126	rs9396314	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=3.214;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr6	57372199	rs9382769	T	C	8507.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:152,386:0.72:538
chr6	57372361	rs9382770	C	A	8827.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:218,402:0.65:620
chr6	57372374	rs68090917	CT	C	5354.73	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:305,192:0.39:497
chr6	57372436	rs9382771	G	C	2807.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=-0.576;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:57,91:0.61:148
chr6	57372436	.	GC	CT	506	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=1;MGOF=40;MMLQ=27;MQ=60.0;NF=8;NR=25;PP=506;QD=16.9535719655;SC=TGGTGAAACCGCTTCAATTAC;SbPval=0.4;Source=Platypus;TC=100;TCF=21;TCR=79;TR=33;WE=57372445;WS=57372426;set=Platypus	GT:AD:AF:DP	1/0:67,33:0.33:100
chr6	57372437	rs79221898	C	T	850.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=2.571;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:96,46:0.32:142
chr6	57372456	rs35141035	AT	A	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.518;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr6	57372480	rs79601039	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr6	57372502	rs9349872	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=1.063;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	57372510	rs77697887	T	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=1.563;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	57372514	rs77868044	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.99;ReadPosRankSum=0.319;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	57392963	rs927193	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	57393029	rs77090024	T	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.221;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr6	57393034	rs75127850	G	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=1.220;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	57393040	rs74756458	A	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=0.980;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	57393054	rs75725892	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	57393074	rs73752376	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr6	57393092	rs73752377	T	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr6	57393125	rs927192	A	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr6	57393160	rs76686926	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr6	57393199	rs2397502	C	A	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-1.687;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:79,31:0.28:110
chr6	57393216	rs2397503	G	T	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=0.647;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:31,50:0.62:81
chr6	57393222	rs111989160	A	G	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=1.336;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr6	57393228	rs112156516	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.335;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr6	57393278	rs75909609	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr6	57398047	rs76081480	A	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr6	57398081	rs7753294	T	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:90,18:0.17:108
chr6	57398154	rs80081867	T	C	14553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.533;QD=21.72;ReadPosRankSum=-1.003;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:307,363:0.54:670
chr6	57398157	rs9476080	A	G	16378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.741;QD=23.30;ReadPosRankSum=-1.339;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:317,386:0.55:703
chr6	57398163	rs9476081	A	G	17880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.246;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.708;QD=22.92;ReadPosRankSum=-2.748;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:334,446:0.57:780
chr6	57398186	rs147954160	G	GA	12850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=929;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.710;QD=14.54;ReadPosRankSum=-1.954;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:396,488:0.55:884
chr6	57398201	rs62398997	T	C	18852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.306;QD=19.70;ReadPosRankSum=-0.192;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:378,579:0.61:957
chr6	57398226	rs77436138	T	A	13287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.793;QD=17.37;ReadPosRankSum=1.356;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:366,399:0.52:765
chr6	57398264	rs62398998	A	G	12620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.315;QD=18.70;ReadPosRankSum=-0.558;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:246,429:0.64:675
chr6	57398270	rs62398999	C	T	3262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.504;QD=5.30;ReadPosRankSum=-0.376;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:416,200:0.32:616
chr6	57398335	rs4715745	A	T	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:78,95:0.55:173
chr6	57398385	.	A	AT	230	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=10;HapScore=4;MGOF=34;MMLQ=27;MQ=60.0;NF=0;NR=9;PP=230;QD=27.1111111111;SC=GAAACGGTCTATTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=29;TCF=0;TCR=29;TR=9;WE=57398403;WS=57398375;set=Platypus	GT:AD:AF:DP	0/1:20,9:0.31:29
chr6	57398395	rs78658694	A	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr6	57398412	rs6937166	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	57415121	rs7741368	G	A	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:134,86:0.39:220
chr6	57415141	rs11346545	TA	T	3714.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:193,121:0.39:314
chr6	57415161	rs493737	T	G	10550.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:133,321:0.71:454
chr6	57415173	rs496135	G	A	3968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.830;QD=7.10;ReadPosRankSum=-0.457;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:343,216:0.39:559
chr6	57415223	rs7741129	A	T	10479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.960;QD=13.13;ReadPosRankSum=1.898;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:507,291:0.36:798
chr6	57415231	rs7761558	T	C	10522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.928;QD=13.24;ReadPosRankSum=0.879;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:501,294:0.37:795
chr6	57415309	rs7741689	G	C	5278.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:111,234:0.68:345
chr6	57415349	rs11412269	G	GA	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr6	57415403	rs11412270	T	TA	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	57415425	rs7741460	A	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.84;ReadPosRankSum=-0.260;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	57433425	rs2397541	C	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.031;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	57433455	rs2151625	C	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-1.163;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr6	57433501	rs201029322	AAAAAAAG	A	1599.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:79,45:0.36:124
chr6	57433525	rs518931	T	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.555;QD=8.06;ReadPosRankSum=0.087;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr6	57433544	rs562762	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:109,35:0.24:144
chr6	57433616	rs518037	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr6	57433669	rs4464799	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.713;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	57457703	rs111977760	A	AG	202.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	57457704	rs5008381	A	T	211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.18;ReadPosRankSum=-0.398;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	57457737	rs9476161	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.399;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr6	57457744	rs4110758	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.628;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr6	57457779	rs4110759	G	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr6	57457843	rs4110760	T	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr6	57457947	rs2397945	A	C	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.222;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:76,62:0.45:138
chr6	57457960	rs2093718	A	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.073;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr6	57457973	rs74595165	C	T	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.298;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:65,47:0.42:112
chr6	57457974	rs4598061	T	G	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.58;ReadPosRankSum=-1.296;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:37,74:0.67:111
chr6	57457995	rs4501418	G	C	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-0.409;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:31,44:0.59:75
chr6	57458001	rs78499845	A	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.099;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr6	57458006	rs4120410	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.007;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr6	57467084	rs9885913	A	G	3893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=5.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.871;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:176,106:0.38:282
chr6	57467093	rs9885916	A	G	4312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.863;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:207,129:0.38:336
chr6	57467100	rs4535533	G	C	9188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=-1.133;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:110,274:0.71:384
chr6	57467107	rs9885751	C	T	3471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=0.028;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:276,177:0.39:453
chr6	57467175	rs4406234	A	G	4814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=1031;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.644;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:713,302:0.30:1015
chr6	57467279	rs6459263	T	C	8775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.732;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:359,241:0.40:600
chr6	57467282	rs6459264	T	C	8691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=0.660;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:341,230:0.40:571
chr6	57467303	rs1022846	A	G	6903.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:83,303:0.78:386
chr6	57467317	rs4637646	G	T	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=1.302;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:191,76:0.28:267
chr6	57467323	rs4424069	G	C	2475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.933;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:170,71:0.29:241
chr6	57472212	rs9296899	T	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr6	57472255	rs9296900	C	T	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,103:0.74:140
chr6	57472299	rs9396358	A	G	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:280,137:0.33:417
chr6	57472315	rs9296901	A	G	11406.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.89;ReadPosRankSum=2.158;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:153,368:0.71:521
chr6	57472316	rs9382818	G	A	3170.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.914;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:354,181:0.34:535
chr6	57472344	rs111230027	A	AT	4759.73	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:505,283:0.36:788
chr6	57472476	rs9382819	T	C	3578.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:294,119:0.29:413
chr6	57472488	rs9382820	C	T	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:245,94:0.28:339
chr6	57472495	rs62400219	C	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:167,120:0.42:287
chr6	57472533	rs9367767	T	C	3273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.42;ReadPosRankSum=-2.242;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:47,99:0.68:146
chr6	57472534	rs74369127	T	C	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-1.902;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:86,57:0.40:143
chr6	57498894	rs3846934	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr6	57498944	rs3846935	G	C	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-2.032;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:37,80:0.68:117
chr6	57499042	rs5876654	A	AT	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.382;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:72,35:0.33:107
chr6	57499171	rs3846936	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.594;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	57499188	rs2151627	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=-2.189;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	57512340	rs4364484	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	57512352	rs5001077	A	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	57512439	rs4294006	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:129,69:0.35:198
chr6	57512476	rs4307164	G	A	7770.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:161,333:0.67:494
chr6	57512510	rs4294007	T	G	14039.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:160,633:0.80:793
chr6	57512529	rs5001076	C	A	5650.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:647,332:0.34:979
chr6	57512565	rs4294008	T	C	20979.77	.	AC=1;AF=0.500;AN=2;DB;DP=1468;set=Intersection	GT:AD:AF:DP	0/1:428,994:0.70:1422
chr6	57512678	rs4398719	G	A	13162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.004;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:333,617:0.65:950
chr6	57512711	rs5001484	G	C	6611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.061;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:320,199:0.38:519
chr6	57512718	rs5001483	T	A	6012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.971;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:290,161:0.36:451
chr6	57512775	rs7773110	T	G	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=4.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=1.059;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr6	57512779	rs76296076	G	T	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=1.335;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr6	57512783	.	T	TGTCACCAAGG	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=5.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.839;SOR=1.686;set=HC	GT:AD:AF:DP	0/1:80,13:0.14:93
chr6	57512785	.	TG	T	252.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.405;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.110;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr6	57512787	.	T	TCACCAAGGC	1106.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.743;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=1.884;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr6	57512788	.	T	TTA	1139.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.431;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=-1.658;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr6	57512792	rs372064495	T	C	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.214;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=-3.750;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr6	62390916	rs1204114	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr6	62442604	rs10484690	A	G	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:202,150:0.43:352
chr6	62526443	rs1005815	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	62757987	rs9346001	C	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	62887031	rs9346218	C	T	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	62887099	rs6921170	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	62995920	rs16883133	T	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr6	63921360	rs10943599	CA	AG	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	63921434	rs374339224	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	63990131	rs35039535	T	C	2779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.919;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:116,137:0.54:253
chr6	64395045	rs138804409	G	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr6	64404641	.	A	G	709.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr6	64412578	rs142252152	A	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr6	64431498	rs144513453	G	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:128,143:0.53:271
chr6	64487809	.	T	A	320.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr6	64709165	rs116045346	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	65016977	rs35395170	TGA	T	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr6	65017057	rs56884225	G	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	65098684	rs115066356	T	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:156,148:0.49:304
chr6	65098768	rs587278	A	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	65301504	rs624851	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	65302915	rs11331907	GA	G	95.19	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr6	65611952	.	T	TCTTA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=2.036;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	65622463	rs9294631	A	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:147,148:0.50:295
chr6	65622662	rs9445437	G	C	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr6	65655883	rs9453115	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	66005857	rs17411795	T	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:156,121:0.44:277
chr6	66012732	.	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-1.702;QD=1.52;ReadPosRankSum=-2.654;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:259,59:0.19:318
chr6	66013183	.	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.76;MQRankSum=1.169;QD=7.43;ReadPosRankSum=-1.316;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	66042231	rs12207746	T	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr6	66045077	rs1502965	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=25.46;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	66045099	rs145435440	AT	A	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.600;QD=24.03;ReadPosRankSum=-1.327;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr6	66045118	rs1502964	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	66063513	rs1936439	G	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	68599166	rs9342670	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.10;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	68599166	.	ATTA	GTTA,GTTT	67	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=5;MMLQ=24;MQ=60.0;NF=3,1;NR=11,5;PP=67,58;QD=7.2693723248;SC=CATAAGGTACATTATCACAAG;SbPval=0.59;Source=Platypus;TC=14;TCF=3;TCR=11;TR=14,6;WE=68599177;WS=68599156;set=Platypus	GT:AF:DP	0/1:1.00:14
chr6	68599169	rs9342671	A	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.92;ReadPosRankSum=-2.759;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	69666183	rs143618979	T	TTA	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	69666193	rs71672105	A	ATATG	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=62.53;MQRankSum=1.984;QD=3.40;ReadPosRankSum=-0.217;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	69666520	rs7757138	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr6	69666684	rs1932618	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	69666747	rs3215965	GA	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr6	69684545	rs186143804	A	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.690;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	69684850	rs2275209	T	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:68,77:0.53:145
chr6	69724069	rs1336655	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-2.920;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr6	69759148	rs618372	A	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr6	69772809	rs13207626	T	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr6	69943418	rs3215840	A	AG	3512.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	70040500	.	G	GA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-1.231;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr6	70048739	rs11751775	A	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr6	70049496	rs148155828	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr6	70049511	rs141099043	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	70064187	rs2296974	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:133,119:0.47:252
chr6	70071173	rs913543	G	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:177,156:0.47:333
chr6	70386247	rs3214020	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	70386320	rs3214021	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-1.367;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:86,61:0.41:147
chr6	70407316	rs77900614	A	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	70411770	rs114726590	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.303;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	70423739	rs2305837	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-1.718;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	70459170	.	AT	A,TT	293.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=18.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,11,5:0.69,0.31:16
chr6	70490528	rs9346354	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	70500451	rs2305838	C	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr6	70500463	rs2305839	T	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr6	70609057	.	A	AT	95.73	.	AC=1;AF=0.500;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.93;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr6	70609082	rs9446168	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.46;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	70639637	rs11421187	T	TA	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr6	70672827	rs7742627	A	G	55.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	70733547	rs2273426	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr6	70769472	rs10945195	G	A	61.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.45;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	70769628	rs57799585	C	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.432;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr6	70778378	rs2224513	GC	CT	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	70812123	rs7772672	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	70852493	rs9342783	A	G	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	70852607	rs3831024	C	CT	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr6	70852841	rs2296013	A	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	70854183	rs9364074	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	70854208	rs58591338	CAG	C	2540.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	70854736	rs9454991	T	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr6	70854924	rs3841703	A	AT	507.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	70856536	rs7762409	C	T	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	70861135	rs3818327	T	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	70866421	rs3736843	T	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	70866609	rs2229799	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	70875976	rs802174	T	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	70876046	rs802175	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	70878198	rs2296009	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	70881783	rs3806050	C	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	70890224	rs2273948	G	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	70894914	rs2296004	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	70909252	rs5877242	AT	A	110.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70916639	.	T	C	817.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr6	70916888	rs1200576	A	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	70926898	rs1200569	G	A	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	70944257	rs6910140	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-0.629;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:93,69:0.43:162
chr6	70944733	rs72923125	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr6	70944825	rs72923127	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	70948888	rs115948163	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	70950281	rs71767894	AAT	A	204.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	70950945	rs73749919	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	70961833	rs1135056	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr6	70962044	rs519068	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr6	70963124	rs9346373	A	C	2943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.410;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:124,150:0.55:274
chr6	70963156	rs701690	T	G	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.755;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:129,117:0.48:246
chr6	70963232	rs701689	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr6	70963247	rs3806081	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr6	70963279	rs701688	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	70965125	rs633762	A	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	70970299	rs2024730	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.576;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr6	70973027	rs77621199	G	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.825;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:38,49:0.56:87
chr6	70978642	rs116114924	C	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr6	70979125	rs551470	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	70979193	rs550675	C	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.351;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	70979283	rs549742	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.101;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr6	70981330	rs16868867	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:109,96:0.47:205
chr6	70981786	rs607156	A	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.552;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr6	70983644	rs71309305	T	TAATA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	70983888	rs34897704	GT	G	51.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.26;ReadPosRankSum=-1.803;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	70984286	rs76938292	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	70984436	rs592121	A	G	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	70984562	rs603304	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	70989703	rs3806099	A	G	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	70990435	rs67240674	T	TC	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.404;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr6	70991003	rs34962262	GA	G	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.800;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.694;QD=9.06;ReadPosRankSum=0.293;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr6	71011831	rs2242589	C	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr6	71162130	rs3736752	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.34;ReadPosRankSum=-0.548;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	71190577	rs2273210	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr6	71232014	rs146416812	GTTTATA	G	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	71236216	rs7740873	C	T	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:114,173:0.60:287
chr6	71236453	.	TACACACACACACACATACACACACACAC	T	203	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=27;MQ=54.45;NF=1;NR=3;PP=203;QD=53.25;SC=CATATATATATACACACACAC;SbPval=0.46;Source=Platypus;TC=7;TCF=1;TCR=6;TR=4;WE=71236488;WS=71236443;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chr6	71248151	rs3830868	TA	T	54.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;MQ=60.51;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	71269459	rs16869371	C	T	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:144,116:0.45:260
chr6	71269632	rs16869373	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr6	71276803	rs2293297	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr6	71377711	rs2274972	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,54:0.59:92
chr6	71378188	rs781984	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	71378313	rs4707842	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr6	71482975	rs1413353	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	71546702	rs2273566	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.201;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr6	71547572	rs7748778	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.191;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr6	71665473	rs9455275	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.663;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	71665479	rs62420336	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-1.710;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr6	71665986	rs1574490	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr6	71666146	rs1320315	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=1.484;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr6	72010963	rs9346458	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	72596699	rs373318853	G	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr6	72836421	rs2463696	A	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	72858416	rs151080929	GTT	G,GT	3001.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.389;QD=19.12;ReadPosRankSum=1.445;SOR=0.745;set=HC	GT:AD:AF:DP	1/2:10,106,41:0.68,0.26:157
chr6	72889472	rs2249021	A	G	10690.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr6	72892257	rs2463730	A	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	72945492	rs2807519	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	72945603	rs138366781	A	ATTTTC	290.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=36.34;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	72947774	rs2807525	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	72962352	rs9351902	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	72968609	rs6923891	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	72984277	rs4504440	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	73110413	rs61736795	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr6	73516397	rs9446758	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	73821193	rs1935537	A	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:110,109:0.50:219
chr6	73821239	rs2000205	T	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	73830423	rs1891404	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	73839456	rs7748968	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	73904807	.	G	A	2965.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:152,147:0.49:299
chr6	73952058	rs12210517	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	73952103	rs6453660	A	C	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	73952109	rs76146370	C	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	73952112	rs79256439	GG	TA	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.33;SOR=1.644;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	73952118	rs6453661	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=1.580;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	74019376	rs16883573	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr6	74072681	rs9446890	G	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr6	74079041	rs497243	A	C	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	74115935	rs57549301	C	CGG	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	74119084	rs4708053	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr6	74121842	rs75732780	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	74135016	rs311678	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr6	74138377	rs79011794	C	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr6	74155346	rs610913	G	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	74155491	rs2985419	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	74161184	.	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr6	74161503	rs9446904	A	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:127,90:0.41:217
chr6	74161801	rs9352000	G	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr6	74171467	rs1713862	C	G	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.453;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr6	74189574	rs7766570	G	A	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	74228006	rs1874229	A	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=2.338;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:33,44:0.57:77
chr6	74228049	rs1874230	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-2.239;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr6	74229258	rs2073466	G	T	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.046;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:114,106:0.48:220
chr6	74229405	rs4708060	C	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr6	74310231	rs11349241	CT	C	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.759;QD=6.82;ReadPosRankSum=0.933;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr6	74320306	rs4708065	C	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr6	74320391	rs1691343	T	A	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	74325257	rs628038	T	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	74331736	rs611580	G	C	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-2.570;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:73,56:0.43:129
chr6	74342014	.	CAA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=0.623;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	74342104	rs16883979	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.438;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	74345026	rs558839	A	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	74345053	rs520589	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=-0.812;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	74348328	rs3757111	C	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr6	74354175	rs472294	C	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr6	74466377	rs6453696	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=1.490;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr6	74471980	rs12661860	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.04;ReadPosRankSum=1.108;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	74481076	rs4706554	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	74490836	rs7742435	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.842;QD=12.18;ReadPosRankSum=1.036;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	74490863	rs7762433	T	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.674;QD=13.77;ReadPosRankSum=-0.565;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	74491002	rs7742662	G	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr6	74491138	rs9447019	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.365;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	74491384	rs111578012	CATATTTTTGAA	C	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	74492547	rs7749069	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr6	74493432	rs10455097	A	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-2.827;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr6	74493615	rs11301365	AT	A	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr6	74495257	rs6453700	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr6	74497009	rs2351528	A	G	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr6	74497152	rs5023688	G	A	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr6	74497237	rs35066559	G	GT	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	74502210	rs12662725	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	74519589	.	C	T	98.94	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	74533192	rs2917887	T	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr6	74537665	rs11992	A	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	75795122	rs112607771	G	GCACACA	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.526;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr6	75797302	rs970547	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	75798722	rs672648	C	A	1163.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;MQRankSum=0.000;QD=17.91;ReadPosRankSum=1.509;SOR=0.600;set=HC	GT:AD:AF:DP	1/1:8,57:0.88:65
chr6	75804783	rs10943236	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.297;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:109,68:0.38:177
chr6	75811857	rs61544138	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr6	75814903	rs9447445	T	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr6	75822826	rs9447446	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	75823372	rs35710072	T	C	2657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.916;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:98,131:0.57:229
chr6	75830974	rs499018	G	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:116,79:0.41:195
chr6	75833876	rs240722	C	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	75835993	rs79956561	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:94,71:0.43:165
chr6	75841722	rs594012	A	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:86,91:0.51:177
chr6	75843845	rs1332778	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	75844600	rs1332020	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr6	75847036	rs240734	G	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	75848169	rs79830915	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:80,86:0.52:166
chr6	75848181	rs240736	A	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	75848376	rs240737	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	75861013	rs73749974	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr6	75861487	rs240726	A	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr6	75862016	rs7769438	T	A	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.080;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:116,122:0.51:238
chr6	75864097	rs73749977	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr6	75864310	rs371546526	CT	C	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	75875434	rs35429515	A	G	3715.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:193,192:0.50:385
chr6	75887271	rs12198145	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=0.870;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	75893457	rs36085827	TA	T	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	75899300	rs75535959	T	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr6	75904455	rs240433	A	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.462;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr6	75951719	rs240419	A	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.002;QD=7.93;ReadPosRankSum=0.391;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr6	75966269	rs418485	A	G	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	75968434	rs73747454	T	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	75968720	rs147523	G	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	75977264	rs73750964	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	75993991	rs60648187	AG	A	48.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	75994151	rs240374	A	G	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:142,132:0.48:274
chr6	76022065	rs202216440	C	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:81,90:0.53:171
chr6	76022082	rs9352202	A	G	11602.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	76022090	rs9343281	G	C	12459.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	76063133	rs6913979	A	G	148.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	76124792	rs2808201	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	76138146	rs5877455	C	CAG	2110.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	76357593	rs569731	G	A	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,82:0.62:132
chr6	76357657	rs613562	T	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr6	76369054	rs507662	A	G	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.821;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:106,113:0.52:219
chr6	76386712	rs35745959	GT	G	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	76387037	rs1391559	T	G	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	76405700	rs7755068	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr6	76425373	rs276681	A	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.88;ReadPosRankSum=-1.001;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	76538361	rs115711509	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr6	76538403	rs1280052	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.353;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr6	76550223	rs114592293	A	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.38;ReadPosRankSum=-0.130;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	76554593	rs7760587	G	A	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	76566734	rs3798439	T	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-1.425;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr6	76576527	rs6453845	G	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	76580243	rs79443273	T	C	316.89	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr6	76595634	rs13211391	C	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	76604572	rs185875129	CT	TG	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-1.204;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr6	76617511	.	A	ATG	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.042;QD=13.74;ReadPosRankSum=-1.566;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	76656978	rs3215818	AT	A	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr6	76660551	rs3734311	G	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	76782049	rs1320537	C	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	78171941	rs6297	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	78172260	rs6296	C	G	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	78172992	rs6298	G	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	79424389	rs116544058	A	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.679;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	79424465	rs143543139	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr6	79424501	rs116237940	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr6	79424532	rs115342635	T	C	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=41.23;ReadPosRankSum=0.178;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	79577644	rs9350789	A	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	79595167	rs146020132	A	ACTTAT	2329.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	79612800	rs9352675	G	A	2824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.498;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:182,148:0.45:330
chr6	79657391	rs1984195	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr6	79664748	rs10455356	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	79665198	rs373838156	GT	G	47.80	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	79679577	rs7742431	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr6	79695029	rs1890229	C	T	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.720;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr6	79708000	rs7747479	A	C	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	79735154	rs9443639	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	79752792	rs9343863	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr6	79911459	rs71547744	GA	G	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.803;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr6	79913379	rs67281239	GA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.59;ReadPosRankSum=0.140;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	79918309	rs9341761	G	A	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	79944096	rs3076135	C	CAG	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	79944355	rs9361504	T	G	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	80196848	rs1875845	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	80228541	rs2655655	A	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr6	80228673	rs2803195	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	80341320	rs6926093	C	G	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80341320	.	CG	GC	148	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=2;MGOF=25;MMLQ=24;MQ=60.0;NF=1;NR=4;PP=148;QD=40.2935749724;SC=TGCGCTCAGCCGGTCCGCCCG;SbPval=0.31;Source=Platypus;TC=14;TCF=1;TCR=13;TR=5;WE=80341329;WS=80341310;set=Platypus	GT:AD:AF:DP	1/1:9,5:0.36:14
chr6	80341321	rs6926397	G	C	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80382916	rs1883878	G	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr6	80513565	rs149560703	G	GCTCTCTGATATGCCATC	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	80580038	rs9361569	T	G	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	80626375	rs3812153	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr6	80629079	rs114247663	T	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=0.049;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	80631539	rs700483	T	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	80631630	rs7770585	G	T	94.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.69;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	80631631	rs7770586	G	C	94.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.69;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	80715838	rs240226	T	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr6	80720487	.	GCAT	G	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=2.838;QD=5.14;ReadPosRankSum=-0.285;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	80720491	rs199573945	T	TAAAGA,TGA	61.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	0/1:0.25:12
chr6	80720733	rs151587	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.54;ReadPosRankSum=1.368;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	80720742	rs239556	A	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.75;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	80724312	rs239566	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr6	80724462	rs239567	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	80747582	rs150447407	TATAATA	T	85.75	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	80750290	rs608962	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.042;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr6	80774236	rs7771228	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr6	80775330	rs3812152	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr6	80777467	rs3828761	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr6	80777608	rs3967160	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr6	80778853	rs6923330	G	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr6	80837253	rs9448894	G	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.846;QD=6.40;ReadPosRankSum=1.467;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:74,55:0.43:129
chr6	80877371	rs73479953	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr6	80878508	rs139630496	A	AAGGAAGGGAGGGAGGG,AAGGAAGGGAGGGAGGGAGGG	1929.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;QD=52.15;SOR=3.086;set=HC	GT:AD:AF:DP	1/2:0,15,22:0.41,0.59:37
chr6	80912746	rs3828753	C	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr6	80912977	rs3749896	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.294;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr6	82204812	rs6935556	T	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.507;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr6	82461520	rs3186631	A	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,84:0.45:186
chr6	82461727	.	A	ACCGCCGAAGTCGCCGCCGCCGAAGTCGCCG	908.73	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.80;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	82461926	rs201698941	GACGCGCGGCGGCGGAGAGC	G	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr6	82910247	rs4706938	C	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	82912153	rs7771978	T	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	82921339	rs9341913	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.071;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr6	82924645	rs6912968	A	G	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	82935376	rs146603947	AATTAACTTTAGTATACTAC	A	1411.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr6	82944059	rs113375767	T	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.557;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr6	83075914	rs700494	G	A	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	83602583	rs4706975	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.276;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr6	83666936	rs293531	T	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.445;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr6	83666943	rs293532	G	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.948;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr6	83733785	rs4235816	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.453;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr6	83752057	rs4612135	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	83754094	rs4455637	T	C	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	83754481	rs2027282	T	C	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	83775201	rs6915334	C	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	83819786	rs73483036	T	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr6	83822985	rs1925782	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	83828724	rs2148010	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	83838684	rs61543280	A	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr6	83839286	rs79219780	T	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-1.545;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	83842055	rs2307912	C	CTCT	3926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=3.440;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:154,107:0.41:261
chr6	83842103	rs3830926	CAA	C	1253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.463;QD=5.08;ReadPosRankSum=-3.128;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:169,78:0.32:247
chr6	83856945	rs45575237	T	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr6	83863583	rs647231	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr6	83869433	rs59285083	T	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr6	83880099	rs34873318	G	A	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.695;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:69,77:0.53:146
chr6	83880167	rs473267	C	T	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=2.063;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:85,68:0.44:153
chr6	83881740	rs542948	T	C	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:219,174:0.44:393
chr6	83898300	rs35905342	GT	G	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.721;QD=8.68;ReadPosRankSum=-0.230;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr6	84055783	rs12215595	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-0.674;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	84056155	rs145851126	G	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr6	84108065	rs4706990	A	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	84233831	rs504593	G	A	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	84234144	rs3812141	C	T	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:117,128:0.52:245
chr6	84234174	rs57628521	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:110,107:0.49:217
chr6	84266041	rs4706182	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;QD=26.94;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	84269707	rs114175236	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.68;ReadPosRankSum=0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	84284664	rs6941004	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	84284880	rs2022269	T	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	84290137	rs147751300	TAAAG	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=1.183;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	84290345	rs6901218	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	84292139	rs1033653	T	A	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	84303342	rs1033655	T	C	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr6	84315354	rs142778996	A	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr6	84366385	rs3037027	C	CAAG	4345.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	84375377	rs217302	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	84417629	rs61739350	G	C	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:117,88:0.43:205
chr6	84417759	.	C	T	338.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr6	84563147	rs9353143	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr6	84563281	rs2298291	T	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	84603226	rs9449718	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr6	84603422	rs3757003	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.154;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr6	84630766	rs61763828	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.779;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr6	84646105	rs61756899	T	A	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.463;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:81,76:0.48:157
chr6	84650364	rs965208	G	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr6	84764982	rs45563336	C	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr6	84772845	rs17730011	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	84911336	rs2274092	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	84935866	rs9449851	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-0.619;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	84935995	rs73750553	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr6	84936242	rs6911426	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	85448103	rs761391	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	85470100	rs74671789	G	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr6	85470124	rs78065813	T	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr6	85472129	rs1883873	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	85472423	rs188296060	C	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr6	85473758	rs172562	C	T	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.350;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:142,141:0.50:283
chr6	86196990	rs3812139	C	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	86199095	rs73481308	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr6	86199233	rs2229523	A	G	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	86199243	rs2229524	T	C	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	86217633	rs61749066	C	A	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.020;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:99,118:0.54:217
chr6	86238102	rs112599967	G	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr6	86246716	rs59514276	T	TA	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr6	86248460	rs9294337	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	86256783	rs79554685	T	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-2.517;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr6	86387036	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.774;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr6	86387220	.	G	GA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.827;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr6	86387405	rs77482651	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	87796233	rs2011192	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	87879217	rs9351117	C	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	87879376	rs9444480	T	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	87879376	.	TTC	CTT	840	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=16;NR=14;PP=840;QD=29.7822624954;SC=TTTTGTTTTGTTCTGTTTTGA;SbPval=0.62;Source=Platypus;TC=31;TCF=16;TCR=15;TR=30;WE=87879386;WS=87879366;set=Platypus	GT:AD:AF:DP	1/1:1,30:0.97:31
chr6	87879378	rs9359738	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	87925824	rs71960404	TAGACACACACACACACACACACAC	T	3370.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	87925874	rs45442199	C	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.931;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr6	87965528	rs6908834	T	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	87966324	rs9444489	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr6	87968565	rs9362415	A	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	87969480	rs6910541	G	A	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-0.032;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:48,58:0.55:106
chr6	87969737	rs3734187	C	T	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	87970301	rs3812132	C	G	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	87994015	rs6934603	A	G	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr6	87994572	rs4707358	G	A	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	88074686	rs114836542	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.709;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr6	88108048	rs67076383	AGAT	A	7084.73	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:208,186:0.47:394
chr6	88108187	rs9450669	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr6	88109304	rs1051550	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	88119528	rs11350856	TA	T	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr6	88119693	rs6454616	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr6	88119736	rs6915562	T	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	88120512	rs6909168	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=-0.366;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	88125616	rs78935113	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr6	88170710	rs73492299	A	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr6	88182704	rs9450704	G	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr6	88226641	rs9450723	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	88251869	rs7773906	T	A	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	88255438	rs4707374	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	88258169	rs34513746	C	T	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	88273971	rs9450740	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	88274353	rs9450741	C	T	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	88300013	rs9450752	A	G	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr6	88303967	rs7750207	A	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr6	88315741	rs2307391	TA	T	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	88317292	rs10706424	CA	C	72.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=14.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	88317675	rs4706294	G	C	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	88331299	rs7772561	A	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	88331334	rs34542681	TC	T	221.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	88361017	rs7772351	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	88366602	rs1075665	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	88366771	rs2307379	A	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	88366814	rs9450766	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr6	88391236	rs9450770	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	88410955	rs2787925	A	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr6	88763650	rs112112414	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr6	88763899	rs80203541	T	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	89322421	rs6937994	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	89323841	rs111360583	T	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	89601490	rs9353633	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr6	89616278	rs9451100	T	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=0.170;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	89650922	rs9451108	C	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr6	89790559	rs66688820	CTTCA	C	14007.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr6	89793894	rs1130809	G	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	89814711	rs9362618	T	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	89814772	rs35869140	CA	C	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	89814830	rs7753709	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=26.36;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	89888744	rs1796743	C	T	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	89891582	rs404943	T	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	89907873	rs422751	G	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	89913108	rs4590241	C	G	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.56;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	89913112	rs4457139	G	A	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	89913209	rs4590242	C	T	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	89913218	rs4445034	T	A	9551.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	89913286	rs4386788	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	89914187	rs2183797	T	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	89914477	rs1556432	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	89967498	rs282129	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr6	89974063	rs723041	T	C	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	89975569	rs6454746	T	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr6	89977322	rs58233945	C	CT	2311.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.12;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	89977906	rs4707535	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	89981413	rs282117	T	C	10493.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,398:1.00:399
chr6	89981486	rs282116	C	T	3041.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:147,155:0.51:302
chr6	90024761	rs9344923	T	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	90039670	rs10502	G	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	90048391	.	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.80;ReadPosRankSum=-0.355;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	90077647	rs200139969	A	AT	205.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.487;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr6	90087557	.	C	T	311.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr6	90323624	rs1179906	T	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	90332958	rs75346070	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	90333058	rs10944455	T	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	90333599	rs17292811	A	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	90333809	rs56088943	A	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	90334101	rs4487551	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	90334473	.	C	A	104.03	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	90347449	rs115085953	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	90381849	rs7764076	A	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	90387189	rs74710574	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	90400329	.	G	C	164.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	90405305	rs192529231	A	G	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.285;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:156,112:0.42:268
chr6	90405305	.	AT	GA	686	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=33;NR=24;PP=686;QD=12.9731206116;SC=CCCATGCTCCATACTCTTGCC;SbPval=0.44;Source=Platypus;TC=127;TCF=77;TCR=50;TR=57;WE=90405314;WS=90405295;set=Platypus	GT:AD:AF:DP	0/1:70,57:0.45:127
chr6	90405306	rs9294446	T	A	9181.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.76;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	90415764	rs7743484	A	G	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	90422928	rs115382023	G	A	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	90432580	.	A	T	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.35;ReadPosRankSum=-0.565;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	90432584	rs2016744	A	T	814.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.95;ReadPosRankSum=-0.921;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	90455084	rs9359861	A	G	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	90459454	rs4053618	G	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	90463149	rs34799081	GA	G	567.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr6	90468465	rs6937244	C	A	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	90497448	rs6923604	T	C	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	90497814	rs4707570	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	90556397	rs375626099	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.683;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr6	90567029	.	A	AT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.732;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	90605836	rs7738845	T	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	90647759	rs182382	G	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.262;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:21,31:0.60:52
chr6	90660319	rs9451298	T	C	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:103,71:0.41:174
chr6	90660573	rs34335140	C	T	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:189,168:0.47:357
chr6	90661576	rs2236181	T	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	91256928	rs2273567	A	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr6	91260116	rs205343	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr6	91263143	rs9451444	A	C	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.605;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:71,57:0.45:128
chr6	91266349	rs3215663	T	TA	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=1.087;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:28,57:0.67:85
chr6	91269333	rs468155	TC	AA	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr6	91271547	rs16883148	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	91296420	rs282070	C	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr6	93956769	rs450238	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	93964319	rs345736	C	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	93965485	.	T	A	152.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	93967249	.	TA	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.733;QD=0.99;ReadPosRankSum=0.066;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr6	93967851	rs345730	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.007;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:139,94:0.40:233
chr6	93973686	rs901455	A	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	93982124	rs345713	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	94067981	rs164544	C	T	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:3,134:0.98:137
chr6	94120192	rs474809	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	94120951	rs9445102	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	94124530	rs540816	C	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	95173689	rs146519092	AG	A	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=-1.531;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr6	95173764	rs1322420	C	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.189;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr6	96034869	.	G	GTATA	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-1.543;QD=5.68;ReadPosRankSum=-1.112;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr6	96034881	rs148967607	A	ATATG	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.961;QD=8.85;ReadPosRankSum=1.401;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr6	96650908	rs4307180	A	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	96651740	rs3811069	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	96652166	.	ATT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	96974386	rs9320194	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.47;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	96988696	rs2475025	A	T	131.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	96999187	rs7775634	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	96999220	rs2475024	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	96999643	rs2255552	A	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	96999725	rs1127175	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	97052697	rs35724976	G	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:79,95:0.55:174
chr6	97063522	rs9373985	C	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr6	97063555	rs9398148	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr6	97339078	rs6684	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=0.892;QD=3.49;ReadPosRankSum=1.294;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr6	97339088	rs11402	C	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=30.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	97339275	rs34213186	C	CA	538.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-0.338;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr6	97414756	rs11753834	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	97414775	rs11754336	T	C	174.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.48;ReadPosRankSum=2.287;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	97415116	rs7758454	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=-0.013;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	97512577	rs2294763	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr6	97512639	rs7765874	A	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr6	97553348	rs6930336	A	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr6	97553481	rs116788879	C	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	97575196	rs2206094	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	97575423	rs1612775	G	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	97578888	rs2387931	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	97580763	rs200555785	CT	C	400.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	97580765	.	A	C	409.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	97613163	rs1209290	T	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	97613299	rs10484830	G	A	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=0.560;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:197,150:0.43:347
chr6	97626374	rs1737145	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr6	97677118	rs9481410	G	A	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:118,110:0.48:228
chr6	97679540	rs34952523	GA	G	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.696;QD=12.55;ReadPosRankSum=0.780;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr6	97681936	rs34161552	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.863;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	97694097	rs4577806	A	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr6	97694582	rs113639235	A	ATAG	2836.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=44.32;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	97730434	.	TGGGG	T	29	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.4999;HP=13;HapScore=2;MGOF=61;MMLQ=19;MQ=60.0;NF=0;NR=2;PP=29;QD=17.0;SC=AGATTCCTGTTGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=97730445;WS=97730424;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr6	98472564	rs9375085	G	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr6	99283376	rs195860	T	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:156,153:0.50:309
chr6	99322064	rs111226417	C	G	119.03	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	99572651	rs11755926	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:95,80:0.46:175
chr6	99572771	rs35787630	AT	A	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.59;ReadPosRankSum=2.429;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	99771540	rs221527	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	99781218	rs11757364	G	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr6	99796886	rs2388906	T	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	99817419	rs11437017	T	TC	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	99817601	rs4144164	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	99817699	rs368152167	GA	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.467;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	99819379	rs6925344	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	99825348	rs11548336	T	C	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	99841907	rs9389317	T	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	99842056	rs9376137	C	A	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:195,166:0.46:361
chr6	99842138	rs9376138	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	99848035	rs71830863	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.043;QD=0.32;ReadPosRankSum=1.332;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:110,22:0.17:132
chr6	99849530	.	ACT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.610;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr6	99853866	rs7744072	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	99860747	rs9321539	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	99883704	rs6570065	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	99883842	rs7745005	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	99894360	rs66817403	CAAAGA	C	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.922;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	99935975	rs2181687	G	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	99951750	rs6934692	G	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	99955243	rs11410603	G	GA	193.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	99999019	rs2296155	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=-1.579;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	99999943	.	G	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.238;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	100016240	rs330872	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	100055044	rs186596959	C	T	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.244;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:223,165:0.43:388
chr6	100056899	rs9494877	T	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr6	100057242	rs78488829	G	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr6	100061624	.	C	CCCG	1353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.05;ReadPosRankSum=-1.480;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr6	100061772	rs73500742	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:67,94:0.58:161
chr6	100368759	rs4839764	G	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	100369284	rs13206575	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	100395875	rs113038117	T	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	100895344	rs397662	C	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	100896569	rs3734353	T	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr6	100957763	rs34448975	C	CA	179.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.084;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=-1.184;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:3,12:0.80:15
chr6	100964147	rs240780	G	C	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	101037718	rs1006398	T	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	101037949	rs115212427	A	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.022;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	101054999	rs395521	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	101090377	rs239245	C	A	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	101090703	rs74951735	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.116;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr6	101094554	rs239239	A	G	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	101100528	rs239235	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	101100539	rs115221379	A	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	101215223	rs11345864	TA	T	2872.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:4,142:0.97:146
chr6	101215244	rs7746961	A	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	101247503	rs3811078	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	101253788	rs4839792	A	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	101307131	rs3734351	C	T	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:95,90:0.49:185
chr6	101311859	rs77513037	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.217;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	101312097	rs846791	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	101312104	rs705600	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	102124470	.	CT	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5011;HP=14;HapScore=2;MGOF=3;MMLQ=25;MQ=60.0;NF=2;NR=1;PP=25;QD=10.3333333333;SC=CTCTAATATTCTTTTTTTTTT;SbPval=0.27;Source=Platypus;TC=6;TCF=2;TCR=4;TR=3;WE=102124478;WS=102124460;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr6	102130410	.	A	AT	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.093;QD=6.43;ReadPosRankSum=-0.354;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr6	102133993	rs2852565	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr6	102134022	rs2786251	C	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr6	102247673	rs6922753	T	C	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	102483188	rs117663092	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr6	105219748	rs142619769	G	GA	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr6	105232204	rs2290515	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	105232233	rs9322817	A	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	105232460	rs71763197	C	CA	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr6	105244504	rs191070918	A	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=0.707;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr6	105244526	rs6918700	A	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.956;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr6	105259111	rs71759768	CTTTA	C	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.503;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	105259122	rs5878826	CAT	C	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.573;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	105259152	rs2168394	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=1.160;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr6	105300070	rs201776642	C	CTG	287.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr6	105300074	rs2499661	C	G	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr6	105300103	.	T	TGTGTGTGTGC	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.564;QD=2.53;ReadPosRankSum=0.483;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr6	105300105	rs2499662	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.834;QD=12.19;ReadPosRankSum=-0.618;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:27,36:0.57:63
chr6	105300250	rs9499992	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-1.085;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr6	105300262	rs10635352	C	CAG	1271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.55;ReadPosRankSum=1.160;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr6	105307378	rs9499993	G	A	3908.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:156,192:0.55:348
chr6	105307435	rs2499655	G	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:128,115:0.47:243
chr6	105388405	rs7766336	T	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=0.639;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	105405220	rs61701350	T	TC	522.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	105548850	rs221657	C	T	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	105577172	rs9404603	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=-2.200;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	105577401	rs4946656	C	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr6	105595261	rs1190274	G	A	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	105602108	rs1190280	T	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr6	105607664	rs34454094	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr6	105609468	rs11961225	C	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:72,103:0.59:175
chr6	105614700	rs980648	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr6	105614743	rs67687316	TTG	T	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	105770790	rs2756329	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	105771090	rs143135621	TTGAG	T	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr6	105771520	rs2253957	T	C	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:143,145:0.50:288
chr6	105776792	rs6902415	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,79:0.46:171
chr6	105776908	rs7741007	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr6	105781123	rs116397688	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr6	105821449	rs9486069	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr6	105821512	rs9500087	T	C	75.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	105823966	rs9486071	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	105845690	rs6910088	A	T	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.651;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:43,80:0.65:123
chr6	105845906	rs6910880	G	A	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	105850636	rs11968875	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr6	105850712	rs880177	A	G	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	106547372	rs811925	C	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr6	106552892	rs17066588	G	C	5001.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:224,239:0.52:463
chr6	106634569	rs41292420	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr6	106727712	rs188076304	A	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	106727719	rs1624701	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	106808946	rs114134433	G	A	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.549;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:95,105:0.53:200
chr6	106899793	rs7763469	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	106959139	rs11752122	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	106959936	rs783420	G	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr6	106959961	rs4946759	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr6	106959999	rs1340623	C	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr6	106960053	rs114293299	C	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:141,93:0.40:234
chr6	106960957	rs1381552	C	T	185.80	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr6	106967358	rs73520804	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:87,63:0.42:150
chr6	106968205	rs73520807	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:115,58:0.34:173
chr6	106973313	rs710096	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr6	106973373	rs59212328	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-1.242;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	106987161	rs783397	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	106987370	rs783396	A	C	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	106989212	rs783392	G	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	106992464	rs1799693	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	106992592	rs2247335	A	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr6	106992844	rs2066201	C	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.16;ReadPosRankSum=1.248;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	106999657	rs58618793	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr6	106999658	rs1676010	A	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr6	107000128	rs1676011	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	107001456	rs1770731	A	T	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,54:0.43:126
chr6	107006336	rs9320179	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr6	107006576	rs113248323	G	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr6	107019880	rs9486410	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr6	107019994	rs9486411	G	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:93,71:0.43:164
chr6	107020088	rs9486412	A	G	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.229;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr6	107020092	rs9486413	G	A	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.123;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:44,44:0.50:88
chr6	107031311	rs73524952	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr6	107050867	rs6568446	A	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	107069140	rs115331965	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.52;ReadPosRankSum=0.191;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	107069232	rs1870868	G	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	107069273	rs1870867	T	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	107069422	rs6919395	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr6	107070528	rs6925367	C	T	84.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.96;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	107070665	rs112030542	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr6	107076696	rs1824619	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr6	107076783	rs1987623	A	T	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	107077550	rs3747792	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr6	107088231	rs36016898	C	T	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.469;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:120,112:0.48:232
chr6	107100483	rs6925169	C	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr6	107103479	rs6911321	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	107231881	rs376280113	GTC	G	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.350;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr6	107351293	rs9486499	G	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr6	107351457	rs1665924	G	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	107361476	rs311207	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	107365330	rs113558556	A	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.13;ReadPosRankSum=0.842;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	107365376	rs7767291	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.538;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr6	107365411	rs311249	G	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	107372242	rs3833659	GTTTTC	G	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	107420516	rs4946811	A	C	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-2.990;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:71,73:0.51:144
chr6	107566946	rs9373933	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	107827753	rs17068251	T	C	60.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	107956095	rs9486659	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	108026317	rs1546962	G	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	108026402	rs1546961	A	C	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	108026455	rs1546960	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	108028967	rs6921672	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr6	108028996	rs3734751	G	A	8619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=2.585;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:144,217:0.60:361
chr6	108029020	rs3734752	T	C	10554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.37;ReadPosRankSum=2.037;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:226,319:0.59:545
chr6	108029109	rs3734754	T	C	6618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-1.531;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:362,342:0.49:704
chr6	108042213	rs846977	G	A	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.57;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	108042213	.	GTAC	ATAC,ATAT	825	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=31;MMLQ=27;MQ=59.8;NF=27,6;NR=40,8;PP=825,98;QD=12.8324061574;SC=CAATAAGGCAGTACAGAGAAG;SbPval=0.55;Source=Platypus;TC=67;TCF=27;TCR=40;TR=67,14;WE=108042224;WS=108042203;set=Platypus	GT:AF:DP	0/1:1.00:67
chr6	108042216	rs3734756	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-0.006;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr6	108042334	rs846978	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	108071204	rs150723162	C	CAG	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	108093328	rs9480798	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	108193148	rs642954	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	108194241	rs579120	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	108197874	.	CA	AA	93	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5468,0.5498;HP=22;HapScore=4;MGOF=20;MMLQ=18;MQ=60.13;NF=0,1;NR=3,3;PP=26,93;QD=20.2570708491;SC=TTCCTGGAAACAAAAAAAAAA;SbPval=0.11;Source=Platypus;TC=11;TCF=6;TCR=5;TR=3,4;WE=108197882;WS=108197864;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	108197874	.	CA	CAAAAA	93	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5468,0.5498;HP=22;HapScore=4;MGOF=20;MMLQ=18;MQ=60.13;NF=0,1;NR=3,3;PP=26,93;QD=20.2570708491;SC=TTCCTGGAAACAAAAAAAAAA;SbPval=0.11;Source=Platypus;TC=11;TCF=6;TCR=5;TR=3,4;WE=108197882;WS=108197864;set=Platypus	GT:AD:AF:DP	0/1:0,4:1.00:4
chr6	108197998	rs570558	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	108224422	rs2272886	A	C	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	108224599	.	CA	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-2.135;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:178,49:0.22:227
chr6	108230346	rs617920	A	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	108233929	rs675117	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	108243115	rs142388422	T	TGGG	4374.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	108243120	.	AAAAAC	A	923.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.054;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:14,62:0.82:76
chr6	108277287	rs9486756	C	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	108279290	rs2272884	G	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	108487877	rs127501	A	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	108488120	rs147559741	T	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr6	108492635	rs2233489	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-1.135;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:48,62:0.56:110
chr6	108495950	rs2233492	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	108498014	rs10563315	CTG	C	1583.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr6	108677003	rs2135941	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	108798498	rs1332027	A	G	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-1.024;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:86,74:0.46:160
chr6	108840870	rs2274776	A	G	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr6	109175441	rs77962707	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.42;ReadPosRankSum=0.303;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	109175744	rs80286413	T	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr6	109175765	rs78854834	T	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr6	109201129	rs17316116	A	C	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.895;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:70,47:0.40:117
chr6	109220830	rs116776653	T	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr6	109221042	rs9486974	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr6	109258284	rs2768558	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr6	109282684	rs56114088	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-0.534;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	109314090	rs201384588	ACTT	A	1935.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr6	109330758	.	CG	C	32	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9998;HP=9;HapScore=2;MGOF=7;MMLQ=21;MQ=60.0;NF=0;NR=2;PP=32;QD=28.0;SC=GCACGGACGGCGGGGGGGCGG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=109330766;WS=109330748;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr6	109575596	rs6919557	C	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	109583186	rs1040285	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.565;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr6	109586062	rs949882	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:88,62:0.41:150
chr6	109586240	rs949881	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr6	109591208	rs9386784	C	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr6	109591433	rs9400262	T	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr6	109591586	rs9374072	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	109615603	rs9487048	G	T	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.498;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:100,102:0.50:202
chr6	109616762	rs9400272	A	G	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:129,124:0.49:253
chr6	109621494	rs6927569	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr6	109629420	rs11153168	A	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr6	109659589	rs57811946	TCACA	T	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.54;ReadPosRankSum=-1.482;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	109665129	rs10457190	C	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	109673933	rs1040284	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr6	109674055	rs11153174	C	T	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:188,192:0.51:380
chr6	109689431	rs974034	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr6	109702646	rs3799840	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.924;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr6	109703391	rs1885691	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	109703683	rs2275652	G	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.116;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:39,42:0.52:81
chr6	109703727	rs1322816	C	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr6	109726262	rs34887926	G	GA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=2.028;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	109726326	rs115696252	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	109761352	rs142756236	GGT	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.545;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.656;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:233,29:0.11:262
chr6	109761437	rs4945831	A	G	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:213,194:0.48:407
chr6	109762236	rs1048203	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr6	109764535	rs1476387	G	T	4106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-0.603;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:209,208:0.50:417
chr6	109765453	rs141577461	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=0.915;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:47,67:0.59:114
chr6	109767631	rs6149743	T	TGTGGTCTGGTCAGTGACCTGCCCAGG	1502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.380;QD=12.52;ReadPosRankSum=0.936;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:78,42:0.35:120
chr6	109767930	rs9320288	GC	TT	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr6	109768295	rs910730	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr6	109769224	rs72092669	AACAG	A	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	109769319	.	ACCGCCTTCTCCCTCTGT	A	155	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=49;MMLQ=24;MQ=52.92;NF=3;NR=1;PP=155;QD=40.25;SC=ACACACACACACCGCCTTCTC;SbPval=0.89;Source=Platypus;TC=7;TCF=4;TCR=3;TR=4;WE=109769343;WS=109769309;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chr6	109769336	rs111385895	TCACACACA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-1.006;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	109770869	rs752261	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr6	109770999	rs752262	G	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,76:0.47:160
chr6	109775436	rs2277113	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr6	109786980	rs3734652	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:76,39:0.34:115
chr6	109796567	rs2232444	C	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr6	109797304	rs2236084	A	G	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,75:0.54:140
chr6	109802651	rs2227263	C	T	3310.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:181,169:0.48:350
chr6	109815351	rs7755941	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr6	109815440	rs7773950	A	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	109818529	.	TCACACACACACACACACA	T,TCACA	2432.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.297;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.78;MQRankSum=-0.152;QD=37.43;ReadPosRankSum=1.487;SOR=0.662;set=HC	GT:AD:AF:DP	1/2:3,7,55:0.11,0.85:65
chr6	109818585	rs71018346	TCTCA	T	1313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=14.28;ReadPosRankSum=3.168;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:40,52:0.57:92
chr6	109818589	rs2024851	A	T	266.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,15:0.17:90
chr6	109827716	rs2277114	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr6	109830298	rs6912368	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	109837859	rs10872035	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	109837879	rs7773915	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	109849983	.	G	GGTTACAAGAGGGTCAGCCTTGAAAAGCT	1514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=5.456;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.170;QD=17.21;ReadPosRankSum=-0.894;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:50,38:0.43:88
chr6	109850199	rs72331392	AAC	A	162.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	109863238	rs9386812	A	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	109871163	rs9400294	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr6	109886005	rs7757895	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr6	109886159	rs10872047	C	T	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	109894773	rs12175588	T	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr6	109894799	rs201968582	T	TA	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr6	109906329	rs71770197	GCTT	G	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	109907099	rs56021725	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr6	109931720	rs114438747	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr6	109940498	rs10499053	A	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=2.740;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr6	109954065	.	C	CATAGATAG	186.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	109954252	rs1406957	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	109954518	rs9374111	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.480;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	109962904	rs7744981	A	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	109982160	rs2016207	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	109993291	rs12197838	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr6	110048489	rs11459279	C	CT	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr6	110053824	.	G	GT	23	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.6219;HP=16;HapScore=2;MGOF=6;MMLQ=19;MQ=59.47;NF=0;NR=2;PP=23;QD=14.0;SC=AATGTACTTTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=2;WE=110053832;WS=110053814;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	110059510	rs2273752	C	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr6	110062873	rs1322124	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.78;ReadPosRankSum=1.383;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	110086098	rs146520572	T	TTTTTTGTTTTTG	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	110087902	rs116602685	A	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr6	110106741	rs6914322	A	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=2.353;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	110107517	rs9885672	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr6	110113763	rs200535694	CT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.092;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr6	110113939	.	CTT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.72;ReadPosRankSum=-0.045;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	110146497	rs10659	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	110300834	rs79008323	G	T	4731.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:174,229:0.57:403
chr6	110530254	rs200116966	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.39;ReadPosRankSum=0.401;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	110643956	rs6908306	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	110644112	rs112341783	A	AG	1612.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	110679062	rs4945854	T	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	110679413	rs62435951	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	110714439	rs17622	G	C	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,69:0.48:145
chr6	110736542	rs9487397	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr6	110736610	rs9384742	T	C	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	110745977	rs3778650	A	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr6	110746526	rs7756222	T	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	110746545	rs9487402	T	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	110752289	rs1033572	G	A	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	110756960	rs221717	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	110777962	rs6907567	A	G	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:155,114:0.42:269
chr6	110778128	rs714368	T	C	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-2.653;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:79,62:0.44:141
chr6	110778323	rs717567	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	110796047	rs7767808	T	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	110796122	rs7747628	A	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.288;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:50,46:0.48:96
chr6	110796139	rs7767970	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr6	110796969	rs55679760	T	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr6	110797214	rs2428188	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr6	110797563	rs2494551	A	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr6	110797605	rs2494552	G	A	2748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.05;ReadPosRankSum=-2.209;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:30,68:0.69:98
chr6	110797612	rs6920997	A	G	3142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=-3.131;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:32,86:0.73:118
chr6	110797703	rs150666553	CCGCGGG	C	9832.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.208;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=30.286;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.470;QD=33.33;ReadPosRankSum=4.758;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:55,240:0.81:295
chr6	110797705	rs62421706	G	C	1259.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.630;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=60.637;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.451;QD=4.37;ReadPosRankSum=-3.571;SOR=3.610;set=HC	GT:AD:AF:DP	0/1:241,47:0.16:288
chr6	110797706	.	CGGGG	C	1365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.195;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=51.404;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.459;QD=4.69;ReadPosRankSum=-3.868;SOR=3.124;set=HC	GT:AD:AF:DP	0/1:242,49:0.17:291
chr6	110797710	.	G	GCACC	1365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.206;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=51.404;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.459;QD=4.69;ReadPosRankSum=-3.753;SOR=3.124;set=HC	GT:AD:AF:DP	0/1:242,49:0.17:291
chr6	110797713	.	C	CCACCCCT	10158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.418;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=42.577;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.500;QD=33.09;ReadPosRankSum=5.159;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:63,244:0.79:307
chr6	110797821	rs11153236	A	G	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	110797905	rs6922017	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	110942653	rs2272211	G	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	111210251	rs56171216	C	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	111214093	rs201449961	CTG	C	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	111280332	rs9374225	G	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	111280538	rs143233557	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.848;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	111283791	rs12154018	T	A	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	111313072	rs5879083	AT	A	320.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	111313155	rs3894917	G	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	111318193	rs3763193	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	111318294	rs3763194	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	111318382	rs73763466	A	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	111318588	rs12191479	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	111320735	rs3904924	C	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	111321037	rs3763196	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	111329221	.	CT	C	22	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=0.9999;HP=17;HapScore=2;MGOF=5;MMLQ=26;MQ=60.0;NF=2;NR=0;PP=22;QD=12.5;SC=TATATAATTGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=2;TCR=1;TR=2;WE=111329229;WS=111329211;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr6	111337078	rs4947093	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr6	111499394	rs12213248	G	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr6	111527988	rs402940	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	111528041	rs12191266	T	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr6	111539925	rs77627779	C	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	111540372	rs405948	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	111543067	rs193282	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	111581114	.	CTTT	C	91.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.59;ReadPosRankSum=-1.297;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr6	111587266	rs11153279	T	C	3083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=0.681;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:196,167:0.46:363
chr6	111588062	.	G	A	845.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:60,41:0.41:101
chr6	111628597	rs3204954	C	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr6	111628626	rs3204953	C	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.355;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:85,56:0.40:141
chr6	111628879	rs240998	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr6	111628999	rs113742829	AT	A	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	111665023	rs240990	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	111695073	rs455645	C	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr6	111695887	rs462779	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr6	111696129	rs3218591	T	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:137,160:0.54:297
chr6	111696257	rs461646	G	A	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.659;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr6	111711232	rs11376056	C	CG	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	111793561	rs7772141	T	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	111896790	rs60481646	CAAAA	C	227.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.180;QD=25.31;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	111901453	rs1043730	G	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr6	111918865	rs174393	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.667;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	111918999	rs174394	T	G	2632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=0.910;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:133,74:0.36:207
chr6	111919007	rs174395	G	A	2616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.782;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:140,74:0.35:214
chr6	111995666	rs3730353	A	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr6	112024262	rs3752545	A	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr6	112024290	rs150477486	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr6	112041359	rs706895	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr6	112375644	rs2280153	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:55,72:0.57:127
chr6	112382313	rs1230345	G	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,52:0.41:128
chr6	112407590	rs9766630	G	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	112408610	rs6568714	T	C	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,108:0.48:226
chr6	112420685	rs17073343	T	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	112420703	rs12154150	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr6	112430886	rs3734291	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr6	112435264	rs3734290	T	G	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.632;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:67,43:0.39:110
chr6	112435273	rs3734289	A	C	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=0.161;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:76,50:0.40:126
chr6	112435444	rs111835795	G	GAAT	803.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr6	112435796	rs6917142	G	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr6	112435807	rs11969913	G	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr6	112435912	rs1050353	A	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr6	112443134	rs4945897	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	112450351	rs2157550	G	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	112454185	rs764587	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr6	112454245	rs3734287	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	112457383	rs1050349	G	C	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=1.432;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:137,120:0.47:257
chr6	112457390	rs2032567	C	T	9189.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.55;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	112457471	rs2032568	G	A	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	112460541	rs2072019	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr6	112471621	rs3832396	GACAA	G	1506.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr6	112471688	rs3734286	G	C	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:148,158:0.52:306
chr6	112476210	rs2277084	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr6	112493872	rs1050348	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr6	112496511	rs6917763	C	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-1.784;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	112506583	rs6908219	G	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	112508769	rs9387061	TG	GT	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	112512905	rs2072021	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr6	112521183	rs2237242	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	112521387	rs4947176	A	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr6	112522893	rs79008328	A	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-0.398;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr6	112528147	rs371859889	GCAAAA	G	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr6	112671611	rs11153361	G	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr6	113543675	rs79729250	C	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr6	114178831	rs113531174	C	CGCT	4256.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	114181505	rs45593337	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.476;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr6	114181914	rs45449896	GTT	G	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.20;ReadPosRankSum=0.503;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	114264690	rs55796700	A	C	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.557;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:72,55:0.43:127
chr6	114277354	rs73766804	T	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr6	114279783	rs2243356	A	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.765;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr6	114280007	rs78209558	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr6	114378970	rs2282237	C	T	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,122:0.47:259
chr6	116264354	rs550480	C	A	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,85:0.51:167
chr6	116264386	rs57164993	A	AT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.648;QD=0.98;ReadPosRankSum=-1.341;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr6	116288912	rs11398565	T	TA	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=18.72;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	116323910	rs1338667	T	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:72,71:0.50:143
chr6	116422281	rs36043015	C	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	116427506	rs201136700	CTT	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.32;ReadPosRankSum=0.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr6	116429623	rs517352	T	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.42;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	116429623	.	TAAACTTTA	AAAACTTTA,AAAACTTTG	45	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=65;MMLQ=27;MQ=59.14;NF=6,3;NR=7,3;PP=45,23;QD=6.13624711902;SC=TTGTGAAGTCTAAACTTTACC;SbPval=0.6;Source=Platypus;TC=13;TCF=6;TCR=7;TR=13,6;WE=116429639;WS=116429613;set=Platypus	GT:AF:DP	0/1:1.00:13
chr6	116429631	rs56116396	A	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-0.394;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	116439220	rs515745	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.07;ReadPosRankSum=0.900;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	116441229	rs111661664	T	TGGG	1096.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	116441470	rs2228548	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr6	116441646	rs2228547	C	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr6	116446576	rs1064583	A	G	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.007;QD=9.13;ReadPosRankSum=1.854;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:73,72:0.50:145
chr6	116574455	rs2232472	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr6	116575083	rs2232470	C	A	11898.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=1.058;SOR=0.441;set=HC	GT:AD:AF:DP	1/1:1,465:1.00:466
chr6	116575344	rs910391	T	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	116579501	rs11153601	C	T	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	116600465	rs78371471	T	TCAC	18333.73	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=45.16;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr6	116600774	rs3749895	C	G	8549.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	116720487	rs10485183	C	T	2562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.945;QD=7.70;ReadPosRankSum=-0.933;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:195,138:0.41:333
chr6	116757557	rs560644	T	C	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr6	116782488	rs2858833	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-1.669;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr6	116783390	rs10784	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr6	116784850	rs41289932	C	G	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr6	116784884	rs11299983	GA	G	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr6	116836720	rs881863	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr6	116875427	rs7762318	G	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.766;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:59,44:0.43:103
chr6	116875504	rs12660180	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr6	116878947	rs6906668	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr6	116892839	rs2295598	C	T	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:66,98:0.60:164
chr6	116901640	rs1321534	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	116912033	rs77165075	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-0.338;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	116944260	rs144505667	C	CTTGTT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.34;ReadPosRankSum=-2.376;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr6	116947906	rs67053288	ATAATT	A	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.629;QD=17.45;ReadPosRankSum=0.228;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	116950734	rs6927567	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.816;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:17,36:0.68:53
chr6	116950833	rs784133	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	116973182	rs4946188	T	C	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.131;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:47,49:0.51:96
chr6	116979930	rs6910565	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	116981827	rs3839370	TC	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=-0.743;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	116982067	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.249;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	117019846	rs7357061	G	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.122;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	117026217	.	A	AT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.905;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	117045674	rs1150108	A	G	96.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	117053238	rs373093102	TA	T	277.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	117053240	.	TATATATATATATATATATA	T	278.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	117073918	rs141678188	T	TATATAC	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.87;ReadPosRankSum=1.016;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	117083132	rs17078309	A	C	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:167,131:0.44:298
chr6	117086265	rs641338	C	A	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	117113761	.	A	AGG,AGGT	1837.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=98;set=Intersection	GT:AF:DP	0/1:0.52:93
chr6	117113762	.	T	TA	1834.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=2.087;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr6	117113765	.	T	TTCC	1791.73	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr6	117114403	rs6901971	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	117121894	rs6917467	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	117130544	rs28360548	A	C	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:85,83:0.49:168
chr6	117130704	rs2274911	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	117149872	rs11753705	A	T	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr6	117150008	rs6907580	G	A	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.254;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:87,98:0.53:185
chr6	117201868	rs149957510	A	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr6	117237584	rs2184343	T	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	117246576	rs67292089	G	GA	945.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr6	117248746	rs73563500	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr6	117587054	rs433425	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	117587074	rs439418	A	G	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	117591619	rs13208901	G	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr6	117591755	rs13194610	T	C	2270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-2.463;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:177,123:0.41:300
chr6	117593697	rs377003972	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-0.200;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	117609720	.	CAGA	C	5214.73	.	AC=1;AF=0.500;AN=2;DP=318;set=Intersection	GT:AD:AF:DP	0/1:167,138:0.45:305
chr6	117631431	rs552183	T	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=1.406;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:36,22:0.38:58
chr6	117649988	rs581235	T	C	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,86:0.45:192
chr6	117665231	rs35841892	T	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.684;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:58,34:0.37:92
chr6	117674087	rs9481703	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr6	117678024	rs148950746	A	G	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=2.020;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:79,70:0.47:149
chr6	117681436	rs150963992	G	GACACACACAC	756.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=47.30;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	117686943	rs2243383	A	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	117710661	rs28639589	T	C	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:107,128:0.54:235
chr6	117714346	rs1535330	C	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	117718303	rs9401003	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:50,63:0.56:113
chr6	117724462	rs2243379	C	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	117724499	rs1407179	A	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	117725448	rs1998206	T	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr6	117725578	rs2243378	T	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	117730592	rs2273602	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	117735716	rs3836983	GA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=0.627;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	117737390	rs2243	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr6	117842698	rs9285421	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	117842772	rs9689345	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	117858304	rs17079343	T	G	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:133,126:0.49:259
chr6	117859964	rs76109131	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr6	117864144	rs210619	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	117865928	rs9320608	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	117868971	rs114464686	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr6	117869491	rs210621	G	A	20279.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:1,770:1.00:771
chr6	117869691	rs114350892	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr6	118229100	rs111915578	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.497;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr6	118475798	rs205966	G	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	118635122	rs283049	G	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	118786486	rs3798420	T	C	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:80,76:0.49:156
chr6	118801232	rs67283653	TCA	T	45.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	118803195	.	TAA	T	66.06	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.52;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	118832320	rs9489424	T	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	118886961	rs3734382	G	T	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	118887303	rs3734381	T	C	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr6	118887401	rs73526183	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:108,82:0.43:190
chr6	118973953	rs9489486	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	118974042	rs9489487	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	119136002	rs144338608	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr6	119149149	rs284921	C	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	119177732	rs794864	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr6	119177775	rs794863	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr6	119191402	rs145678929	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr6	119215706	rs150975405	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr6	119215722	rs139800548	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr6	119234688	rs9374756	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr6	119234699	rs41292550	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	119243072	rs41292554	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.32;ReadPosRankSum=0.735;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	119243102	rs67182660	A	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.072;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	119245024	rs12197931	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr6	119245392	rs67476232	CA	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.597;QD=7.45;ReadPosRankSum=2.428;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr6	119252676	rs73521381	A	G	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:118,94:0.44:212
chr6	119296378	rs200247036	T	TA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-1.957;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	119324823	rs1762192	T	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr6	119327112	rs794262	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	119345408	rs6907441	G	A	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:129,128:0.50:257
chr6	119346010	rs1775613	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr6	119346718	rs74402272	CC	AA	3469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=0.437;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:82,91:0.53:173
chr6	119346912	rs6929403	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr6	119500916	rs3756943	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	119501601	rs35129454	T	TAA	2056.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr6	119501618	rs6569054	A	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr6	119501684	.	A	ATTTT	69.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	119509785	rs2142887	C	G	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.146;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:63,67:0.52:130
chr6	119509870	rs2142888	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr6	119510739	rs2072888	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=-0.366;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	119510777	rs2072889	T	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	119510941	rs2072890	C	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr6	119511120	rs142938329	TA	T	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.004;QD=6.62;ReadPosRankSum=-1.620;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	119522252	rs3822996	G	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	119522306	rs9387641	T	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr6	119522353	rs9481890	T	C	3424.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=-0.748;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,139:0.99:140
chr6	119522553	rs9481891	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	119611708	rs9489670	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	119611934	rs113131653	GA	G	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr6	119611989	rs9489671	A	T	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	119623358	rs11153807	G	A	95.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.319;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	119623415	rs6918089	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	119627976	rs6915559	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	119628017	rs200633795	G	A	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,104:0.51:204
chr6	119628029	rs195092	C	T	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	119628198	rs6915947	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	119653186	rs7754482	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr6	120336217	rs67803782	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	120336269	rs66780530	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	120336327	rs68035463	C	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	120336384	rs67106263	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	121412191	.	T	TA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=0.275;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	121434364	rs79312519	T	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.928;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr6	121436298	rs75699042	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.296;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr6	121436420	rs7772283	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	121436422	rs7772508	G	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	121451095	rs1273728	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	121481929	rs6938483	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr6	121491472	rs1273749	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr6	121526447	rs9320795	G	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	121526459	rs35328788	G	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	121526465	rs35549991	G	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	121560191	rs10214599	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr6	121577445	rs79413374	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	121600183	rs4466276	T	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr6	121602785	rs79221470	T	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=-0.383;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr6	121602795	rs79788801	C	T	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.55;ReadPosRankSum=-1.777;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr6	121613168	rs78778707	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=0.524;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	121615826	rs6941332	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr6	121620608	rs9387944	G	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	121624740	rs4946561	A	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=2.277;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr6	121625366	rs74613655	G	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	121625832	rs10499105	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	121625945	rs79040695	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	121629008	rs199895253	C	CA	65.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.92;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	121629208	rs77386127	G	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr6	121632008	rs9372653	T	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	121632031	rs78067941	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr6	121638666	rs75747353	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.912;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr6	121638682	rs75540618	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.178;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr6	121642790	rs10499110	T	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr6	121642916	rs75082736	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr6	121655392	rs9490162	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr6	122720806	rs6926219	G	A	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	122734972	rs549302	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	122743502	rs487487	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	122752550	rs149578348	T	TTA	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	122772692	rs510283	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	122775180	.	AAC	A	57	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=16;MQ=60.0;NF=0;NR=2;PP=57;QD=33.0;SC=CAACTGGGGAAACACACACAC;SbPval=0.26;Source=Platypus;TC=12;TCF=6;TCR=6;TR=2;WE=122775203;WS=122775170;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr6	122775195	rs499825	A	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	122793033	rs1267941	A	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	123022496	rs4382328	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr6	123038887	rs6920792	C	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	123038887	.	CT	GC	215	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=2;MGOF=66;MMLQ=27;MQ=60.0;NF=10;NR=3;PP=215;QD=20.6513749894;SC=TGAACATTTACTTCTGAATAG;SbPval=0.49;Source=Platypus;TC=15;TCF=12;TCR=3;TR=13;WE=123038896;WS=123038877;set=Platypus	GT:AD:AF:DP	1/1:2,13:0.87:15
chr6	123038888	rs6900745	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	123101348	rs2171068	G	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	123101647	rs2243372	A	G	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr6	123110621	rs72968540	C	G	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	123319382	rs11154131	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr6	123369688	rs7757486	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	123369706	rs71752673	CCTAAA	C	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	123369910	rs6900862	T	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	123377106	rs61732197	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:110,67:0.38:177
chr6	123539609	rs361509	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	123539684	rs361508	CT	TC	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	123539904	rs7754205	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,47:0.42:113
chr6	123545159	rs11368178	GA	G	58.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=9.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	123545372	rs9490705	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr6	123545501	rs9490706	G	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	123591138	rs1367676	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.29;ReadPosRankSum=-2.522;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	123592184	rs113318627	C	CTGTG,CTGTGTG	313.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	0/1:0.85:13
chr6	123599331	rs140706039	G	GT	80.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	123600171	rs113656748	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.073;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr6	123658776	rs6569336	G	T	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	123658897	rs6569337	T	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.844;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	123687241	rs11964350	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.115;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr6	123687288	rs2873479	A	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	123687432	rs7769808	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	123696766	rs17737379	G	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-1.567;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	123699042	rs6901953	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	123702642	rs9482382	T	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=1.830;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	123703101	.	GCT	G	30	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.4999;HP=2;HapScore=2;MGOF=9;MMLQ=22;MQ=59.9;NF=0;NR=1;PP=30;QD=33.0;SC=TAGATTTGGCGCTCTCTCTCT;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=1;WE=123703110;WS=123703091;set=Platypus	GT:AD:AF:DP	1/0:5,1:0.17:6
chr6	123703168	rs56239280	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr6	123709833	rs17737834	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr6	123714655	rs372285636	TG	T	258.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.373;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	123714657	rs73771941	C	T	267.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.254;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	123758492	rs9320936	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.086;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr6	123758510	rs10223545	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.938;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr6	123758514	rs10223841	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.938;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr6	123758586	rs10223585	C	T	56.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.24;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	123777762	rs13210103	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr6	123777820	rs149503595	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr6	123778708	rs71541231	CT	C	97.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.19;ReadPosRankSum=-0.489;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	123778732	rs6915179	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=2.237;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	123819847	rs9320940	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr6	123833457	rs6902416	G	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-1.323;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr6	123851590	rs12198164	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=0.319;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr6	123851610	rs12198167	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=0.728;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr6	123851612	rs186663059	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=0.493;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr6	123869607	rs9490809	G	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr6	123869769	rs36117733	TAAA	T,TA	1910.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.66;MQRankSum=0.460;QD=26.91;ReadPosRankSum=1.668;SOR=0.865;set=HC	GT:AD:AF:DP	1/2:2,34,35:0.48,0.49:71
chr6	124603277	rs2251785	T	C	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.036;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:70,78:0.53:148
chr6	124603337	rs72980476	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr6	124603378	rs1916790	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr6	124603390	rs802497	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	124604055	rs41284440	G	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr6	124759017	.	G	GGTTTT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.723;QD=2.16;ReadPosRankSum=-0.405;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr6	124759146	rs622026	A	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr6	124811558	rs3052658	G	GTT,GTTT	614.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.000;QD=24.59;ReadPosRankSum=1.041;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:1,13,11:0.52,0.44:25
chr6	125139473	rs1923726	TG	GC	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	125229473	rs57796502	T	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr6	125229538	rs781733	T	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	125229856	rs781734	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	125230064	rs56739571	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	125230075	rs781735	A	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	125230575	rs1577203	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	125230965	rs1761559	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	125231037	rs1761560	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	125231246	rs1750578	T	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	125232072	rs699387	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	125232368	rs781740	G	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr6	125232434	rs67942759	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr6	125232594	rs781741	C	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	125232766	rs11385725	C	CA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=11.34;ReadPosRankSum=2.424;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr6	125232853	rs6569400	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	125233518	rs781742	A	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr6	125252842	rs6927751	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	125284457	rs9401790	T	C	5007.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:226,249:0.52:475
chr6	125366289	rs34249175	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.377;QD=3.15;ReadPosRankSum=-0.039;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr6	125402711	rs492800	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr6	125475148	rs185936051	G	A	4383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.058;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:218,221:0.50:439
chr6	125573194	rs3799734	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr6	125574977	rs80086479	T	A	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=2.834;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr6	125597247	rs113530993	GA	G	940.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr6	125597433	rs113374738	AAG	A	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr6	125598199	rs2243392	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.74;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	125598199	.	TG	CA,CG	262	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=4,18;NR=0,4;PP=27,262;QD=20.1169687156;SC=GTCACTACACTGAGTAAGCCA;SbPval=1.0;Source=Platypus;TC=22;TCF=18;TCR=4;TR=4,22;WE=125598208;WS=125598189;set=Platypus	GT:AF:DP	0/1:0.18:22
chr6	125598200	rs2243391	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.140;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	125614100	rs1417701	C	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=2.737;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr6	125614121	rs1417700	C	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.979;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr6	125620878	rs987168	T	C	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.269;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:104,94:0.47:198
chr6	125621618	rs2243390	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr6	125621645	rs2243389	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr6	125621920	rs9491377	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.85;ReadPosRankSum=1.611;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	125623185	rs73581683	A	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr6	125623247	rs73581685	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=10.793;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.786;QD=19.70;ReadPosRankSum=0.955;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr6	125623268	.	C	CTCCTCT	743.73	.	AC=1;AF=0.500;AN=2;DP=30;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr6	125623274	rs62432878	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.798;QD=5.72;ReadPosRankSum=-0.899;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr6	125623289	rs145065587	C	CTCCTCT	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=23.03;ReadPosRankSum=2.896;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr6	126072853	rs2875881	C	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	126072857	rs112780587	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.22;ReadPosRankSum=-0.366;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	126073212	rs112235907	T	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr6	126073259	rs371231318	TCCCCCCACCCAC	T	584.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr6	126075709	rs202056802	ATT	A	772.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=22.08;ReadPosRankSum=0.789;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:5,30:0.86:35
chr6	126080169	rs3734640	TC	AA	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	126136425	rs1145990	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.390;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	126176095	rs192644517	G	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	126210395	rs6919947	T	G	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:147,146:0.50:293
chr6	126242004	rs4563736	CG	GC	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	126249914	rs1567	T	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr6	126278230	rs2295005	G	C	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-1.634;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:156,128:0.45:284
chr6	126288023	rs3757212	T	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	126307962	rs6569448	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	126319881	rs6569449	T	A	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	126334041	rs2206941	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	127471533	rs9491699	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	127471791	rs3734626	C	T	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	127476516	rs1892172	G	A	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	127640190	rs9285460	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=2.754;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	127768762	rs6902288	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr6	127768950	rs2236027	A	C	110.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.85;ReadPosRankSum=1.242;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	127770923	rs3818135	A	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.798;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	127771452	rs3734447	T	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr6	127796326	rs12194762	G	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	128031164	rs76135180	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.365;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	128040759	rs79095604	A	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr6	128040839	rs675531	T	C	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	128128374	rs9767314	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=1.294;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	128150549	rs76624440	G	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	128176089	rs149808791	AT	A	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr6	128176383	rs270032	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	128221853	rs75036643	A	G	55.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	128297762	rs74370515	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr6	128297986	rs4321844	G	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	128302417	rs35140919	G	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr6	128307018	rs61757811	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:99,72:0.42:171
chr6	128307134	rs75405851	A	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	128307155	rs34209700	T	TA	190.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;QD=19.07;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	128312114	rs5879871	T	TAG	93.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	128385998	rs4897241	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	128388990	rs4897242	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr6	128389074	rs4897243	T	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	128559281	rs11970637	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=0.745;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr6	128559301	rs9375556	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=1.280;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	128559341	.	AAAAAAAG	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr6	128561306	rs72291480	AG	A	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr6	128562572	rs61583694	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=1.960;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	128643529	rs6931769	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr6	128730267	rs73589563	G	T	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	128794068	rs1341598	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	128841382	rs11752256	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr6	128841648	rs62426793	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr6	129204319	rs10080633	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr6	129381026	rs4404787	C	A	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.522;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:53,66:0.55:119
chr6	129465020	rs7754560	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr6	129468288	rs2279165	A	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr6	129486913	rs3778137	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	129498736	rs2326759	A	C	349.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.87;ReadPosRankSum=-0.428;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr6	129571330	rs3816665	G	A	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:106,122:0.54:228
chr6	129571488	rs2169870	A	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	129609237	rs9492296	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr6	129612765	rs35277491	G	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr6	129612808	rs1027199	A	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr6	129619150	rs1027200	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	129633970	rs79017110	TTG	T	915.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=-0.828;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr6	129634255	rs3798663	G	A	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	129635800	rs2306942	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr6	129704396	rs73591259	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=0.177;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:50,34:0.40:84
chr6	129722389	rs3749877	A	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:185,109:0.37:294
chr6	129722425	rs3749878	G	A	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:226,130:0.37:356
chr6	129724894	rs2326817	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr6	129724942	rs3828735	T	A	6227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=3.576;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:169,159:0.48:328
chr6	129724944	rs80125253	CT	TG	6224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.287;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=2.539;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:173,162:0.48:335
chr6	129763197	rs7738519	C	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	129764454	rs151280823	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=1.242;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	129777382	rs1811970	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr6	129785391	rs1414736	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	129796620	rs7741996	C	T	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	129799682	rs2784895	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr6	129802302	rs2275214	G	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	129802716	rs2571581	A	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.63;ReadPosRankSum=-1.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	129807483	rs6569604	C	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	129807629	rs2229848	C	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr6	129807699	rs2229849	G	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr6	129807714	rs2229850	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr6	129813346	rs1889891	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	129823645	rs7754167	A	G	47.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	129927014	rs3813366	A	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	129932745	rs148956917	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.278;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:74,47:0.39:121
chr6	129932894	rs7753754	T	C	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	129950394	rs4295498	A	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-0.000;QD=19.47;ReadPosRankSum=2.100;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	129950394	.	ATA	CTC	185	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=2;MGOF=32;MMLQ=29;MQ=61.07;NF=1;NR=3;PP=185;QD=59.6169687156;SC=CTCTCTCTCTATATATATATA;SbPval=0.86;Source=Platypus;TC=5;TCF=2;TCR=3;TR=4;WE=129950404;WS=129950387;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr6	129950396	rs71543162	A	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-0.000;QD=19.47;ReadPosRankSum=2.100;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	129955117	rs9375645	A	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.118;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr6	129955151	rs113829468	G	GA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.030;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.967;QD=0.83;ReadPosRankSum=-1.991;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr6	130031215	rs3752536	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr6	130152479	rs7758540	T	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.519;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:26,54:0.68:80
chr6	130154667	rs9492393	T	C	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:125,118:0.49:243
chr6	130154686	rs4629709	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr6	130164764	rs9321190	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr6	130164856	rs9402185	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	130370731	rs142539365	TTG	T	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr6	130381246	rs7451021	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr6	130405020	rs7774174	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	130407126	rs11269609	GGCCTCAAGTGATCCGCCC	G	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	130415294	rs57117596	A	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	130415355	rs58515674	C	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr6	130454839	rs6910854	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.780;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr6	130454974	rs369531783	AT	A	576.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr6	130466413	rs4897369	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	130483222	rs9321214	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	130496883	rs13196169	G	T	278.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr6	130504481	rs370056383	CA	C	117.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=14.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	130505374	rs41285310	A	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	130530815	rs1932100	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr6	130535420	rs4897377	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr6	130536494	rs34071457	AT	A	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:5,109:0.96:114
chr6	130761798	rs3813360	T	C	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.099;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:124,84:0.40:208
chr6	130761804	rs12200105	C	T	7073.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	130761957	rs3813359	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:87,98:0.53:185
chr6	131148426	rs6940163	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	131148541	rs4895897	A	G	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	131148740	rs116696205	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:168,112:0.40:280
chr6	131179228	rs142570288	G	C	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=8.37;ReadPosRankSum=1.022;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:132,111:0.46:243
chr6	131184770	rs915172	T	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	131184914	rs915171	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:120,80:0.40:200
chr6	131184960	rs77538813	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:53,93:0.64:146
chr6	131184975	rs867707	C	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	131188514	rs73632232	T	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr6	131190838	rs17059736	G	A	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:127,158:0.55:285
chr6	131197990	rs7741462	T	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	131211614	rs35374139	AG	A	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	131215651	rs57192575	C	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr6	131215668	rs57668625	G	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	131220749	rs78440904	T	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr6	131247975	rs2275509	C	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	131276466	rs34763200	GA	G	1978.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	131276473	rs45550834	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	131466481	rs7771473	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.282;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr6	131490472	rs1408027	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr6	131540726	rs3822866	A	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=1.803;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	131574386	rs141495149	A	AT	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr6	131904704	rs60712846	G	GA	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	131911655	rs2608955	A	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	131917379	rs2608985	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	131929309	rs71753454	A	AC	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	131931092	rs2245133	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	131940890	rs2297638	A	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	131948469	rs60163644	GA	G	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=6.390;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.892;QD=6.14;ReadPosRankSum=2.104;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:46,82:0.64:128
chr6	131948816	rs369598986	T	TAA	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.842;QD=6.88;ReadPosRankSum=1.133;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:45,48:0.52:93
chr6	131958485	rs9375819	A	C	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	131959539	rs78194253	A	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.501;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr6	131973932	rs3765562	C	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr6	131998010	rs181603038	T	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-2.019;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr6	132043349	rs378697	A	T	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	132061605	rs67914728	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr6	132168996	.	G	GGTGT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.55;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr6	132172368	rs1044498	A	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	132181673	rs9493113	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	132189067	rs71804740	CT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.107;QD=2.05;ReadPosRankSum=0.993;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr6	132194252	rs148248232	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr6	132203470	rs1799774	AT	A	1488.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:55,65:0.54:120
chr6	132203642	rs181153206	C	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	132207964	rs10692757	C	CTCT	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	132270728	rs59140114	GA	G	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.377;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	132271952	rs7451102	G	C	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	132271959	rs12206231	T	G	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	132271980	rs6934749	T	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	132272362	rs377154534	C	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.035;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr6	132618241	rs143028372	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr6	132641731	.	CA	TG	256.77	.	AC=1;AF=0.500;AN=2;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	132641949	rs9493286	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr6	132644035	rs604196	G	A	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:81,96:0.54:177
chr6	132696016	rs3734744	T	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	132722264	rs78014656	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr6	132785071	rs143657395	AAC	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.793;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.761;QD=0.68;ReadPosRankSum=-0.575;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:126,16:0.11:142
chr6	132789363	rs3765577	A	G	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	132824833	rs2842885	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	132859609	rs2842899	T	A	3417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=8.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.272;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:113,165:0.59:278
chr6	132860522	rs2842898	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.958;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	132892143	rs17061409	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:78,54:0.41:132
chr6	132892204	rs17061412	A	G	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr6	132910394	rs139894475	G	C	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:154,122:0.44:276
chr6	132910612	rs3813355	G	A	7410.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr6	132910634	rs3813354	C	T	7956.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr6	132911270	rs17061477	A	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr6	132929592	rs3813353	C	G	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:183,107:0.37:290
chr6	132929904	rs3813352	C	T	8989.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	132929911	rs3813351	A	G	8991.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	132929993	rs3813350	T	C	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:104,146:0.58:250
chr6	132930158	rs35751778	T	C	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:162,155:0.49:317
chr6	132930277	rs35927289	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr6	132930324	rs7759004	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr6	132938276	rs191592350	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.060;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr6	132938817	rs61745666	G	A	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:88,104:0.54:192
chr6	133032759	rs3798792	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	133035098	rs2294757	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	133035325	rs4897612	A	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	133045040	rs9483495	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr6	133048024	rs6569834	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr6	133048213	rs9493417	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	133050139	rs45470599	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr6	133052580	rs45623638	A	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:102,73:0.42:175
chr6	133052616	rs4895943	C	T	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	133055610	rs764262	G	T	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	133070995	rs4895944	G	T	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	133072434	rs33961621	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:80,96:0.55:176
chr6	133074645	rs9493425	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr6	133074663	rs9493426	T	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	133076896	rs9483499	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	133078973	rs33950336	G	T	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.174;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:119,96:0.45:215
chr6	133079136	rs3901670	A	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	133097447	rs201035431	T	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:109,90:0.45:199
chr6	133097655	rs150108934	C	CTTG	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	133097665	rs59718818	T	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	133100322	rs73550462	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	133105120	rs6926101	C	T	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	133105303	rs7762248	A	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	133108763	.	C	CT	87.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=1.973;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	133110835	rs116102000	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr6	133111266	rs6930703	C	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	133111349	rs35004921	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.99;ReadPosRankSum=2.424;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	133118214	rs34688576	C	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:124,171:0.58:295
chr6	133119686	rs61737667	C	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr6	133119757	rs12211701	C	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	133135807	rs9493450	C	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	133135886	rs9483504	A	G	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	133138010	rs9389034	T	C	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	133138067	rs371269086	ATTT	A	1894.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr6	133138347	rs112737245	CTG	C	1300.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr6	133703698	rs10484668	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr6	133782375	rs3756873	T	A	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	133783625	rs139659489	ATCT	A	11238.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	133789728	rs9493627	G	A	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	133827148	rs6929656	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	133827354	rs2277083	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.889;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	133849789	rs3822939	A	G	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	133849966	rs3734279	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr6	134312271	rs17063242	C	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr6	134491457	rs7755303	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr6	134493149	rs141988023	A	AG	239.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	134494548	rs1743965	C	T	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	134528394	.	C	A	144.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	134536256	.	T	TTTTC	300	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=3;HapScore=2;MGOF=17;MMLQ=19;MQ=60.88;NF=1;NR=14;PP=300;QD=21.0;SC=TGAGAGTAAGTTTTCTTTCTT;SbPval=0.57;Source=Platypus;TC=18;TCF=1;TCR=17;TR=15;WE=134536264;WS=134536246;set=Platypus	GT:AD:AF:DP	1/1:3,15:0.83:18
chr6	134536272	.	C	CTTTCT	197.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=-0.755;QD=9.89;ReadPosRankSum=0.481;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	134536309	rs4896026	G	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	135260303	rs7754722	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr6	135271328	rs4646870	C	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr6	135286438	rs35078158	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.044;QD=5.43;ReadPosRankSum=-0.123;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	135286505	rs13199205	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.30;ReadPosRankSum=-1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	135287533	rs13064	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:92,101:0.52:193
chr6	135290355	rs35571217	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-1.032;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr6	135299959	rs13214669	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr6	135306521	rs73774527	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr6	135308013	rs73774528	C	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=3.006;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	135314182	rs7741626	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.246;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr6	135314265	rs7761964	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.615;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr6	135318854	rs4895439	A	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-1.063;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr6	135324051	rs45544135	T	C	163.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	135324052	rs140431690	TTTAAA	T	154.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	135357545	rs11319479	AT	A	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	135358567	rs7742542	T	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr6	135363180	rs112702237	G	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr6	135371727	rs35916433	C	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.624;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr6	135375762	rs2297338	G	A	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:209,221:0.51:430
chr6	135424179	rs35959442	C	G	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	135424203	rs6930223	G	T	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	135511587	rs1022506	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	135517996	rs12660713	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr6	135518108	rs73555742	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr6	135522755	rs3752383	A	G	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.971;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:48,37:0.44:85
chr6	135523786	rs41294868	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr6	135524059	rs139146517	GC	G	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr6	135606565	rs1052502	G	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	135618449	rs58812259	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	135621600	rs4896141	C	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr6	135679271	rs73559947	G	A	1908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.449;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:96,96:0.50:192
chr6	135759417	rs11965621	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr6	135763585	rs2614274	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	135811368	rs141019618	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr6	136172996	rs60347338	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.261;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	136472185	rs35539959	G	GA	559.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	136472439	rs4896201	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr6	136472496	rs4896202	T	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	136502620	rs9321554	C	A	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	136508399	rs3734548	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	136552553	rs115367796	G	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.508;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr6	136552569	rs112930946	C	CA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.538;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	136554276	rs78201570	A	T	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	136554647	rs2274141	A	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	136560948	rs10484485	G	A	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr6	136561074	rs10484486	T	G	539.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr6	136566083	rs60351480	TAAAAAAGAC	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	136570221	rs147085272	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr6	136582417	rs62431283	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr6	136582497	rs62431284	G	T	3734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-6.613;QD=9.93;ReadPosRankSum=-0.894;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:191,185:0.49:376
chr6	136582512	rs148203420	C	T	4832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-6.442;QD=9.33;ReadPosRankSum=0.413;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:268,250:0.48:518
chr6	136590613	rs62431285	T	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-6.882;QD=3.13;ReadPosRankSum=0.397;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:142,45:0.24:187
chr6	136590640	rs62431286	A	C	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.246;QD=5.52;ReadPosRankSum=-3.230;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:184,98:0.35:282
chr6	136590698	rs62431287	C	T	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=10.798;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-5.060;QD=3.93;ReadPosRankSum=-1.251;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:262,104:0.28:366
chr6	136590712	rs62431288	C	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=9.553;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-3.938;QD=3.34;ReadPosRankSum=-4.192;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:256,89:0.26:345
chr6	136597004	rs7762367	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.939;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-0.319;QD=0.54;ReadPosRankSum=-4.394;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:157,27:0.15:184
chr6	136597262	rs1967444	T	C	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:188,159:0.46:347
chr6	136597281	rs1967445	A	T	5962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.670;QD=16.80;ReadPosRankSum=0.342;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:196,159:0.45:355
chr6	136597288	rs1967446	A	C	5915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.968;QD=16.57;ReadPosRankSum=1.391;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:201,156:0.44:357
chr6	136599393	rs6940018	G	C	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:251,218:0.46:469
chr6	136599404	rs6919254	T	C	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:238,214:0.47:452
chr6	136599822	rs9942517	C	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-3.215;QD=5.41;ReadPosRankSum=-0.776;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr6	136599836	rs9942518	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.169;QD=11.73;ReadPosRankSum=-0.408;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr6	136599842	rs9942519	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-3.714;QD=11.45;ReadPosRankSum=0.090;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:79,42:0.35:121
chr6	136681291	rs71727934	C	CT	36.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	136681673	rs9389383	A	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr6	136682172	rs2076190	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr6	136710478	rs9389386	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr6	136710669	rs58458173	TA	T	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.869;QD=6.11;ReadPosRankSum=0.684;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:56,91:0.62:147
chr6	136732664	rs12176346	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	136847116	rs5880298	GT	G	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.213;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr6	136871672	rs2277099	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr6	136904783	rs78692210	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:125,80:0.39:205
chr6	136913217	rs2076262	T	C	41.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	136913537	rs112664524	A	C	3863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.537;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:197,198:0.50:395
chr6	136972021	rs11969650	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr6	136977568	rs2076260	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-2.053;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr6	137026266	rs9321567	T	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.45;ReadPosRankSum=-2.253;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	137041833	rs1321477	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr6	137113137	rs55666429	G	A	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	137143611	rs1321470	A	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	137143709	rs1321471	T	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.765;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr6	137143748	rs73777751	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr6	137143773	rs115866467	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr6	137143980	rs11283064	G	GGGGGCC	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.754;QD=27.52;ReadPosRankSum=-0.330;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	137151125	.	G	GT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.550;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr6	137166682	rs927181	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	137167445	rs9321575	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr6	137187641	rs1884940	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	137191970	rs34118640	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	137338276	rs433243	A	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr6	137338352	rs451371	G	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-1.073;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:33,34:0.51:67
chr6	137338357	rs442663	A	G	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=-1.027;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr6	137477823	rs2064501	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	137539726	rs201457622	TC	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.447;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr6	138196066	rs2230926	T	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr6	138202378	rs5029956	C	T	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:208,151:0.42:359
chr6	138413269	rs648396	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr6	138413333	rs648802	G	C	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:103,118:0.53:221
chr6	138539183	rs3841283	A	AG	1741.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,69:0.40:174
chr6	138539315	rs6927706	A	G	2674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.967;QD=9.94;ReadPosRankSum=-0.602;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:129,140:0.52:269
chr6	138539556	rs11758517	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	138566719	rs75188756	C	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr6	138615030	rs56707563	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr6	138644826	rs17067425	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.205;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr6	138645228	rs3734301	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:106,89:0.46:195
chr6	138655028	rs4895520	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.391;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr6	138656343	rs41289781	C	G	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr6	138724668	rs7740623	C	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	138725677	rs2274659	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	138725829	rs56015157	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	138725857	rs9495076	A	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	138725938	rs180731617	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-1.029;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	138726183	rs6919872	A	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	138734250	rs45459099	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-1.803;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	138745178	rs41289795	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	138745557	rs75518295	G	C	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:186,161:0.46:347
chr6	138750709	rs73573203	A	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.91;ReadPosRankSum=0.015;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	138752242	rs6927981	G	A	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:126,103:0.45:229
chr6	138753337	rs2039121	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr6	138754323	rs2327891	A	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	138756310	rs79957731	T	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr6	138820271	rs112641364	GACAC	G	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-0.474;QD=7.30;ReadPosRankSum=0.898;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	138820289	rs57483336	CACACACAG	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.373;QD=10.80;ReadPosRankSum=0.492;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	138820324	rs10457670	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.390;QD=5.61;ReadPosRankSum=1.452;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr6	138892750	rs78928133	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	139085450	rs4243458	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	139094629	rs111500978	C	CGG,CGGG	5096.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.15;SOR=1.153;set=HC	GT:AD:AF:DP	1/2:0,102,39:0.72,0.28:141
chr6	139106722	rs3763186	C	A	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr6	139106787	rs3763187	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr6	139114113	rs6570282	A	G	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	139134558	rs1919691	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139144693	rs202126704	C	T	3409.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.144;MLEAC=2;MLEAF=1.000;MQ=47.17;MQRankSum=-0.797;QD=25.83;ReadPosRankSum=1.935;SOR=0.345;set=HC	GT:AD:AF:DP	1/1:1,131:0.99:132
chr6	139186128	rs77047026	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	139189153	.	A	AG	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=62.36;MQRankSum=4.096;QD=8.79;ReadPosRankSum=-0.806;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr6	139197609	rs1529151	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=1.286;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:74,58:0.44:132
chr6	139202014	rs1157050	G	C	104.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	139206592	rs17067990	G	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr6	139206899	rs144150484	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:100,67:0.40:167
chr6	139206937	rs17067993	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr6	139207910	rs1188831	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	139208118	rs7764840	T	G	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	139229695	rs1188867	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	139229743	rs1188868	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	139229872	rs1044418	C	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr6	139232579	rs3765191	C	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	139238599	rs2272432	G	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr6	139241332	rs9495285	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.016;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr6	139255524	rs17068128	C	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr6	139264930	rs6899737	T	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	139265882	rs1188897	T	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	139266402	rs1569238	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.557;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.855;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr6	139487394	rs7768941	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	139487836	rs3173082	T	C	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:173,179:0.51:352
chr6	139563914	rs9495391	C	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	139576544	rs41289819	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:107,62:0.37:169
chr6	139576736	rs17068451	C	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr6	139591719	rs57521690	T	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=1.185;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:32,50:0.61:82
chr6	139598061	rs66961117	TA	T	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	139610006	rs9321712	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr6	139610124	rs55712380	G	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.72;ReadPosRankSum=0.090;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	139695061	rs1131400	G	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr6	141004964	rs5880480	G	GT	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=39.62;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	141005059	rs4535568	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=24.22;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	142384082	rs6907175	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	142491463	rs11446143	C	CG	1008.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	142691950	rs71643377	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.428;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr6	142718801	rs989946	G	A	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	142724918	rs9496369	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr6	142758631	rs1262686	A	G	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	142759346	rs112638708	C	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.894;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr6	143074700	rs169098	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	143081847	rs197462	A	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	143091263	rs109836	A	G	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	143092471	rs9484670	T	C	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:143,106:0.43:249
chr6	143381712	rs3811093	T	C	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.019;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr6	143382110	rs7774011	T	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr6	143382254	.	CGTGT	C	1528.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr6	143382443	rs72986693	G	A	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.896;QD=11.15;ReadPosRankSum=-0.877;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:83,106:0.56:189
chr6	143382534	rs112521955	C	CAACT	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	143605261	rs11556576	G	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr6	143605472	rs9403480	G	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	143749762	rs9321905	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr6	143753549	rs189320908	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr6	143754938	rs3761999	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	143765993	rs200456994	CT	C	169.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	143766276	rs9373391	A	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	143772176	rs116692495	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr6	143772311	rs2272924	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr6	143784031	rs3830767	AT	A	3192.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	143789181	rs161068	A	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	143792078	rs3762000	C	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.126;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr6	143792675	rs22908	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr6	143806276	rs161058	A	G	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	143816859	rs8161	C	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	144032317	rs2488101	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	144081609	rs2073214	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:113,86:0.43:199
chr6	144086394	rs9496767	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr6	144104469	rs1012753	A	T	195.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	144144678	rs78321126	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr6	144144922	rs11969315	T	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr6	144164476	rs112907020	T	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.665;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr6	144178419	rs3818089	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	144181509	rs141119650	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	144183269	rs77708266	T	C	2120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.204;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:104,111:0.52:215
chr6	144183351	rs77248328	A	G	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-2.982;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:54,71:0.57:125
chr6	144183376	rs56155985	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr6	144224312	rs9484827	T	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.106;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:32,22:0.41:54
chr6	144258619	rs1884087	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	144258650	rs1884088	C	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	144258670	rs3215583	C	CA	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	144263140	rs149291080	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr6	144263347	rs36120645	A	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:151,128:0.46:279
chr6	144508593	rs9496891	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr6	144665226	.	C	CAA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=0.361;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	144665357	rs6917261	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr6	144758799	rs4895642	A	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	144761429	rs4609044	G	A	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	144768531	rs9496976	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	144772421	rs6902981	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr6	144772476	rs6903136	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,88:0.51:174
chr6	144803547	.	GT	AT	1785	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=8;MMLQ=27;MQ=61.07;NF=2,0;NR=3,5;PP=148,1785;QD=36.5542425094;SC=TATTATTGTTGTTATTATTAT;SbPval=0.5;Source=Platypus;TC=19;TCF=6;TCR=13;TR=5,5;WE=144803555;WS=144803537;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr6	144803547	.	GT	GTTATTATTAT	305.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AF:DP	0/1:0.44:18
chr6	144806691	rs9496982	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	144811181	rs78109066	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr6	144811422	rs78616065	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	144814625	rs368319861	GTC	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.491;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:51,7:0.12:58
chr6	144820607	rs76387237	A	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr6	144835040	rs66905872	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.441;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr6	144844317	rs116699477	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr6	144872051	rs1005974	C	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	144999763	rs9376837	A	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	145021193	rs140389119	GTTA	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.708;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chr6	145051594	rs4305737	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	145069287	rs7756909	C	T	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	145075724	rs4896740	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	145076046	rs4243472	C	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.75;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	145076046	.	CCT	GCA	364	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=7;PP=364;QD=59.6382678375;SC=TTAGATAGATCCTTGTAAGGA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=7;WE=145076056;WS=145076036;set=Platypus	GT:AD:AF:DP	1/1:1,7:0.88:8
chr6	145076048	rs4243473	T	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	145079000	rs138732713	T	C	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=2.276;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:99,94:0.49:193
chr6	145079197	rs9283116	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	145092930	rs9403603	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=-0.319;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr6	145095544	rs7763934	C	T	191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-0.728;QD=6.19;ReadPosRankSum=-1.279;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	145095545	rs10650309	G	GT	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.883;QD=8.57;ReadPosRankSum=1.017;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr6	145114935	rs4243475	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr6	145148690	rs2066054	A	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	145148927	rs2297844	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr6	145162001	rs4895657	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	145822992	rs380883	A	G	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	145823642	rs370653	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	145823844	rs391524	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	145947080	rs1045820	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr6	146007166	rs702322	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	146012061	rs2142978	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	146047148	rs140874263	G	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr6	146056476	rs2235482	G	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr6	146112348	rs6931553	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.445;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr6	146125466	rs9403747	T	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,53:0.46:114
chr6	146126419	rs9373475	C	T	3477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-2.652;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:157,175:0.53:332
chr6	146207465	rs1062068	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.174;QD=7.33;ReadPosRankSum=0.064;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr6	146207502	rs11421576	G	GT	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr6	146207563	rs1062067	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr6	146207657	rs2256998	A	C	37.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	146215266	rs17840313	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr6	146216184	rs2247206	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr6	146231849	.	CA	C	431.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr6	146234644	rs9497426	G	A	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	146242689	rs201255490	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	146243526	rs79112908	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.99;ReadPosRankSum=-1.805;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	146243581	rs6917482	C	T	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.319;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	146244081	rs34616835	GTT	GTTT,G	86.19	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	0/1:0.57:14
chr6	146244743	rs6923545	A	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-1.576;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	146254100	rs55757353	T	TC	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.489;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	146262697	rs9285508	G	T	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	146268623	rs9386141	T	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr6	146480452	rs115698440	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-1.118;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr6	146719883	rs362856	C	A	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:111,105:0.49:216
chr6	146720887	rs71706077	TTC	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=-0.674;QD=7.96;ReadPosRankSum=1.960;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	146755324	rs6923492	T	C	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:162,154:0.49:316
chr6	146755515	rs6923864	T	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr6	146755842	rs9373491	C	A	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:122,154:0.56:276
chr6	146965893	rs59743065	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	146975456	rs71778473	TTA	T	3797.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	146993445	rs9497606	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	147006800	rs79924570	T	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.799;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr6	147006845	rs12195808	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	147022047	rs73571703	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr6	147022319	rs73571704	T	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr6	147036626	rs9497610	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.005;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:54,37:0.41:91
chr6	147036676	rs9485116	T	C	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.987;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr6	147038089	rs61748896	G	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:100,89:0.47:189
chr6	147042695	rs11273150	A	AGGGAACATGCAATAATAAGATTTTTAGAGGC,AGGGAACATGGAATAATAAGATTTTTAGAGGC	1970.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=44.79;SOR=2.012;set=HC	GT:AD:AF:DP	1/2:0,22,22:0.50,0.50:44
chr6	147045529	rs114853587	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr6	147047341	rs3747754	T	C	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:115,117:0.50:232
chr6	147049641	rs11155480	T	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	147049899	rs1327669	T	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.218;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:52,61:0.54:113
chr6	147054241	rs146394886	A	ATTAATGTAC	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	147054410	rs67991595	T	TA	1236.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.34;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	147057881	rs73575939	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr6	147061814	rs73575947	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	147062220	rs1327666	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	147066954	rs9647636	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	147073671	rs186199600	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:92,69:0.43:161
chr6	147103358	rs1325701	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr6	147103416	rs259405	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	147106841	rs259391	A	G	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.51;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	147109488	rs9322075	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr6	147109692	rs76082778	G	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr6	147136244	rs259370	A	G	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr6	147136444	rs1052449	A	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	147526933	rs57284678	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr6	147631201	rs6928919	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	147635318	rs5880705	T	TAC	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=2.688;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr6	147635385	rs1039083	C	G	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.264;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:58,43:0.43:101
chr6	147635413	rs1039084	A	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.243;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,44:0.44:99
chr6	147635547	rs1039085	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-0.319;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	147637309	rs76761271	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	147680193	rs75603038	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr6	147680359	rs9390459	A	G	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.984;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:88,111:0.56:199
chr6	147830308	rs914955	C	T	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-1.251;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr6	148051302	rs147133038	C	T	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.765;QD=13.13;ReadPosRankSum=-1.777;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:36,65:0.64:101
chr6	148051351	rs150057658	T	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-0.863;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr6	148058583	rs17077296	A	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr6	148701197	rs4897000	A	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	148701214	rs58833571	C	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr6	148709929	rs116385224	G	A	113.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.28;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	148711193	rs139722980	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr6	148792617	rs1883625	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr6	148808624	rs2294778	G	C	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	148829952	rs1147863	G	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:36,97:0.73:133
chr6	148848919	rs2110198	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	148853867	rs1465307	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr6	148865257	rs208696	A	G	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:138,140:0.50:278
chr6	149285719	rs3734377	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	149340390	rs2275423	G	C	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	149718650	rs237028	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	149721690	rs237025	G	A	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	149772295	rs142544743	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.694;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr6	149772447	.	C	T	301.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr6	149772645	rs415434	A	G	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	149773878	rs73779360	G	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:121,111:0.48:232
chr6	149780695	rs384163	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	149780737	rs140859	G	GACTA	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr6	149782798	rs411091	G	A	30.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.28;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	149782847	rs411308	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	149782908	rs376757	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr6	149795590	rs7772994	G	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:147,177:0.55:324
chr6	149842391	rs77468395	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	149862453	rs201357465	GTAAA	G	1381.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	149893262	rs114124895	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-0.674;QD=6.13;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	149925690	rs9766101	C	T	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	149953835	rs9322202	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	149997343	rs73606794	C	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	149997657	rs62439843	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	150052698	.	TA	T	172.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.535;QD=11.52;ReadPosRankSum=-1.507;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	150064968	rs58509133	C	CT	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	150093678	rs3805748	C	T	2938.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.09;ReadPosRankSum=0.150;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr6	150114606	rs12182220	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	150114745	rs4816	G	A	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	150123316	rs11297063	CTT	CT,C	514.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/1:0.91:34
chr6	150174278	rs61745766	A	C	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr6	150209805	.	TA	T	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=7.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-1.843;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr6	150210681	rs9371533	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr6	150211123	rs2151910	A	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	150263123	rs7766021	A	T	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:150,150:0.50:300
chr6	150263186	rs4343924	A	C	14235.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr6	150267527	rs2282235	A	C	3848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-1.106;QD=10.32;ReadPosRankSum=0.681;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:183,190:0.51:373
chr6	150268474	rs145177180	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.34;MQRankSum=0.714;QD=7.63;ReadPosRankSum=-0.380;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	150269778	rs6940581	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr6	150285128	rs62441827	G	C	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.709;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:58,89:0.61:147
chr6	150285209	rs61742437	G	C	6993.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	150289867	rs73614652	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr6	150322211	rs9397541	C	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr6	150322381	rs9384023	T	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	150341990	rs9397120	A	G	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.51;QD=46.70;SOR=1.748;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	150341993	rs9384047	C	A	6808.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=41.77;SOR=1.363;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	150342396	rs9479414	G	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.44;QD=31.60;SOR=5.820;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	150343211	rs202055124	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.48;QD=29.91;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	150346424	rs114811584	C	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	150346740	rs1544123	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	150385886	rs9478409	C	T	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr6	150387302	rs669009	A	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	150387312	rs6935471	A	G	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	150390313	rs622317	G	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	150464356	rs2297672	A	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.88;ReadPosRankSum=0.431;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	150570077	rs200986997	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.795;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	150715468	rs2076291	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	150716439	rs5029121	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.308;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	150716449	rs1556882	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=1.022;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr6	150716533	rs4407723	T	A	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-0.629;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr6	150716696	rs612421	T	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.68;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	150716696	.	TG	CA,CG	403	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=59.84;NF=11,21;NR=17,36;PP=322,403;QD=13.4095669594;SC=CTCACAAGGCTGCCCAGGTGC;SbPval=0.47;Source=Platypus;TC=57;TCF=21;TCR=36;TR=28,57;WE=150716705;WS=150716686;set=Platypus	GT:AF:DP	0/1:0.49:57
chr6	150716697	rs4479949	G	A	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.431;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:43,42:0.49:85
chr6	150717640	rs7774077	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr6	150717788	rs7769542	A	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	150921026	.	T	TGAGCCCGAGCCCGAGCCC	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.54;MQRankSum=1.061;QD=41.30;ReadPosRankSum=-1.206;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:3,23:0.88:26
chr6	151055236	rs112699245	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr6	151121760	rs2073062	T	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-2.580;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	151121915	rs2073061	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,74:0.46:161
chr6	151125723	rs35118684	AC	A	284.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr6	151125724	rs803432	C	A	700.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.814;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.655;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:32,42:0.57:74
chr6	151125896	rs712218	G	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	151140637	rs184183530	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	151152059	rs2073065	G	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr6	151152656	rs803411	T	C	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:97,133:0.58:230
chr6	151161018	rs17348890	A	G	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.435;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr6	151186857	.	C	CCCGCCG	1233.73	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr6	151187349	rs9397361	C	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	151198895	rs2073064	T	C	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	151199071	rs2073063	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	151220245	rs803419	A	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=0.508;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	151247439	rs803455	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	151257871	rs742832	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.152;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:41,49:0.54:90
chr6	151258122	rs742831	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.345;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr6	151258127	rs742830	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	151259770	rs6933598	C	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	151260002	rs3734416	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	151260063	rs12214461	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.776;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr6	151281668	rs7739248	T	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	151336313	rs6910091	T	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	151336739	rs509474	C	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	151337686	rs479755	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.78;ReadPosRankSum=-3.025;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr6	151561921	rs5880922	TG	T	913.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	151626774	rs9397388	T	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	151669875	rs10872670	A	G	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=1.078;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:41,51:0.55:92
chr6	151670172	rs3734799	A	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr6	151670329	rs139326971	AAGG	A	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr6	151670897	rs900654	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr6	151674116	rs3842128	T	TGAG	4141.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:138,109:0.44:247
chr6	151674593	rs3734795	G	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:107,93:0.47:200
chr6	151686905	rs11155787	C	T	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:140,151:0.52:291
chr6	151726300	rs1065310	G	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	151726756	rs3757314	T	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	151726829	rs3757315	C	T	2322.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=0.943;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:2,94:0.98:96
chr6	151738376	rs60573826	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr6	151742541	rs4870017	T	C	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.34;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	151742541	.	TG	CA,CG	260	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=19;MQ=60.0;NF=8,14;NR=9,19;PP=260,173;QD=18.4392867566;SC=AAATCTGAAGTGGCATAATTT;SbPval=0.42;Source=Platypus;TC=34;TCF=14;TCR=20;TR=17,33;WE=151742550;WS=151742531;set=Platypus	GT:AF:DP	0/1:0.50:34
chr6	151742542	rs9479038	G	A	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.970;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr6	151743629	rs6912830	A	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	151754273	rs6904364	T	C	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:180,204:0.53:384
chr6	151766397	rs73783025	G	A	2029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.107;QD=10.97;ReadPosRankSum=-2.949;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:84,101:0.55:185
chr6	151766500	rs61739876	T	C	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.568;QD=6.89;ReadPosRankSum=1.392;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:123,74:0.38:197
chr6	151773504	rs13201167	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	151773831	rs111270458	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	151785551	rs17081270	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	151859091	rs9479062	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	151859146	rs71677524	GT	G	741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.824;QD=10.91;ReadPosRankSum=1.269;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:15,53:0.78:68
chr6	151869645	rs3734803	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr6	151894278	rs4242277	G	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	151894505	rs953767	T	C	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	151914421	rs9383930	A	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	151936704	rs73617535	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.836;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:60,51:0.46:111
chr6	151939181	rs3734804	G	A	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	152129077	rs2077647	T	C	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:321,315:0.50:636
chr6	152129308	rs746432	G	C	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:119,84:0.41:203
chr6	152130288	rs73618149	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr6	152201875	rs4986934	T	C	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	152265282	rs55740371	A	AT	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.912;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr6	152265522	rs1801132	G	C	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	152461048	rs147380321	CTGTT	C	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	152461061	rs3818110	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr6	152462172	rs140264845	AAAAC	A	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr6	152464839	rs2256135	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	152466582	rs2813487	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	152466674	rs2747662	T	C	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	152469188	rs2252755	C	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	152469331	rs2252748	C	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr6	152470752	rs17082236	C	A	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	152472660	rs2348080	T	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr6	152473181	rs910415	T	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:144,115:0.44:259
chr6	152489038	rs997769	T	C	7803.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	152489294	rs998147	T	C	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	152497782	rs2635440	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	152497815	rs2813507	A	G	124.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	152510573	rs2635460	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr6	152523143	rs2635441	G	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.57;ReadPosRankSum=1.745;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	152534946	rs684807	T	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	152536261	rs73780851	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	152539572	rs35809482	TA	T	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.238;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr6	152540278	rs2147377	A	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	152542548	rs9383976	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	152546740	rs1998620	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	152552375	rs2274142	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr6	152560916	rs9479275	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr6	152565897	rs3888239	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	152570415	rs6557210	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	152577752	rs17082389	T	C	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=1.149;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:42,66:0.61:108
chr6	152603139	rs9478310	T	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr6	152603209	rs9479283	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	152629586	rs9371581	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,66:0.48:138
chr6	152629815	rs4112833	C	T	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	152631256	rs11292345	CA	C	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	152631265	rs34118755	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	152638209	rs1890100	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	152644476	rs12206044	A	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	152644501	rs112635596	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr6	152647681	rs2306916	A	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	152652034	rs6911096	A	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	152653037	rs9478314	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	152655330	rs2130262	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,137:0.48:287
chr6	152658142	rs9479297	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	152658191	rs9479298	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	152658216	rs9479299	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr6	152665261	rs4645434	C	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	152665464	rs35003170	TC	T	266.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	152671475	rs9478320	A	C	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	152671553	rs9478321	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	152671919	rs5880967	G	GA	2092.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr6	152671975	rs1387549	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	152673147	rs6908392	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	152673519	rs6932325	A	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr6	152673543	rs11370219	C	CT	325.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.76;MQRankSum=-0.335;QD=14.16;ReadPosRankSum=-1.640;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	152675854	rs9397102	A	G	9264.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr6	152683183	rs7771657	G	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	152683199	rs7771662	G	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	152683413	rs4407724	G	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	152685865	rs6911574	G	A,GAGGA	1075.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.76;QD=35.86;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,17,13:0.57,0.43:30
chr6	152688276	rs75694045	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:141,99:0.41:240
chr6	152688334	rs77322999	T	C	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:171,120:0.41:291
chr6	152688567	rs7775637	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	152690150	rs114954026	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:113,71:0.39:184
chr6	152690559	rs1873176	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr6	152694184	rs6913579	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	152702062	.	A	AT	97.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	152708310	rs214950	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr6	152711395	rs214943	T	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr6	152712302	rs9942542	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=0.691;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	152712715	.	GA	G,GAAAAAAA	582.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.41;ReadPosRankSum=-1.222;SOR=0.507;set=HC	GT:AD:AF:DP	1/2:1,14,11:0.54,0.42:26
chr6	152712752	rs214944	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	152719602	rs488673	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.730;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr6	152721029	rs214951	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	152722228	rs177330	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	152725221	rs114497126	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	152725239	.	G	GAT	806.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.61;ReadPosRankSum=-0.092;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	152725253	rs28402070	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.605;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr6	152728379	rs78757858	T	G	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.868;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr6	152728466	rs114405587	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.070;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	152730424	rs79377201	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	152740681	.	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.738;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	152751426	rs554608	A	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	152751558	rs553642	C	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	152762461	rs76856540	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	152768796	rs502268	T	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	152772264	rs214976	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	152772411	rs61388700	CA	C	123.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	152774917	rs214973	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	152776750	rs214968	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.065;QD=9.01;ReadPosRankSum=-0.206;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:57,52:0.48:109
chr6	152777819	rs214967	G	A	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	152782628	rs506181	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	152782933	rs579464	G	A	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	152784054	rs7775181	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr6	152784075	rs7776344	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr6	152793412	rs4523096	C	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr6	152793572	rs4331993	T	A	1581.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.058;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:14,80:0.85:94
chr6	152793575	rs4343926	A	G	4416.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	152805889	rs9397512	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	152809527	rs9397106	A	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	152832135	rs80276170	T	C	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:148,149:0.50:297
chr6	152847335	rs2141152	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr6	152861052	rs74861532	G	T	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=2.159;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:139,111:0.44:250
chr6	153078172	rs79756015	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr6	153292226	.	A	AT	21	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5208;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=62.13;NF=2;NR=0;PP=21;QD=19.0;SC=TCACAATACAATTTTTTTTAA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=153292234;WS=153292216;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	153296370	rs7763565	G	A	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr6	153296541	rs2073260	G	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	153311001	rs3860814	A	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.01;QD=24.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	153311333	rs3215595	C	CA	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	153315695	rs3192723	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	153315744	rs57819885	T	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	153315921	rs3799133	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	153316018	rs6941558	G	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr6	153319782	rs73634631	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr6	153323594	rs3818123	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr6	153323709	rs3818125	T	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr6	153323806	rs3818126	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr6	153323896	rs3818127	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	153345309	rs545323	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	153603370	.	C	CT	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.307;QD=3.89;ReadPosRankSum=0.553;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr6	153603373	rs9371678	T	C	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-1.693;QD=9.61;ReadPosRankSum=1.004;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr6	153603515	rs57413609	G	T	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:131,149:0.53:280
chr6	153603884	rs200077057	GA	G	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr6	154411344	rs9479757	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	154414446	rs540825	A	T	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	154415435	rs9479759	C	T	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	154429140	rs28785263	C	T	181.82	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	154535276	rs9478525	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	154535444	rs2293537	A	G	3701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.022;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:204,192:0.48:396
chr6	154535578	rs9478526	A	C	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.934;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:53,59:0.53:112
chr6	154542491	rs2272381	A	G	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.935;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:51,60:0.54:111
chr6	154568006	rs114430458	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.168;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	154727825	rs12528985	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr6	154735597	rs41292912	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr6	154735973	rs13219628	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	154743525	rs7771159	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=-1.264;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	154751543	rs41292914	T	A	420.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.58;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr6	154754566	rs73574922	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr6	154762376	.	CAAA	C	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=2.938;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	154762394	rs9384219	A	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=1.430;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr6	154762524	rs6916438	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.836;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr6	154762617	rs138418753	T	TTTTTG	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.35;ReadPosRankSum=0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	154763401	rs6557351	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	154763522	rs6907693	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	154771277	rs9322467	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr6	154771449	rs4870285	T	C	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	155063210	rs9397742	G	A	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:86,63:0.42:149
chr6	155094988	rs7762129	G	A	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	155095002	rs7762135	G	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	155116285	rs79232250	TTC	T	1624.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr6	155124583	rs3757291	T	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	155129784	rs66499928	CCTTT	C	3484.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	155131089	rs41292926	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr6	155143502	rs75282196	A	G	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.015;QD=10.02;ReadPosRankSum=1.599;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:102,107:0.51:209
chr6	155451464	rs79755976	T	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:114,97:0.46:211
chr6	155451476	rs114815467	G	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:107,96:0.47:203
chr6	155485535	rs1032140	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr6	155485554	rs1032141	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr6	155532507	rs112428142	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.132;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr6	155561564	rs11751085	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	155561760	rs4259257	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:110,101:0.48:211
chr6	155565744	rs6907595	T	C	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr6	155566889	rs11435976	G	GT,GTT	692.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.722;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.804;QD=12.60;ReadPosRankSum=-0.312;SOR=1.426;set=HC	GT:AD:AF:DP	1/2:11,22,22:0.40,0.40:55
chr6	155569356	rs143939666	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	155571113	rs3011902	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr6	155573331	rs3011898	A	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-1.042;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr6	155574207	rs2274824	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr6	155574349	rs115440915	T	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	155577714	rs114239511	G	C	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=2.183;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:136,165:0.55:301
chr6	155577716	rs114515125	TT	CA	3488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.886;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=2.106;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:134,162:0.55:296
chr6	155577823	rs1571766	C	T	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	155579246	rs3734322	A	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	155581289	rs4869849	C	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	155581388	rs113353705	G	C	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr6	155581619	rs912721	G	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	155596700	rs1014664	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	155596901	rs927718	T	C	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr6	155606325	rs324356	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:106,77:0.42:183
chr6	155618346	rs162970	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=0.674;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	155632259	rs149043279	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.000;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr6	155635585	rs162981	A	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.00;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	155635585	.	ACCCTACCTCA	CCCCTACCTCA,CCCCTACCTCC	261	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=17;MMLQ=27;MQ=59.79;NF=15,6;NR=19,5;PP=261,79;QD=8.69915331021;SC=GCACCATCCAACCCTACCTCA;SbPval=0.52;Source=Platypus;TC=35;TCF=15;TCR=20;TR=34,11;WE=155635603;WS=155635575;set=Platypus	GT:AF:DP	0/1:0.97:35
chr6	155635595	rs199988321	A	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.965;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr6	155635624	rs1334688	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	155635637	rs1334687	A	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr6	155732287	rs78227291	G	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.679;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr6	155732623	rs148663239	T	TG	291.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	155750035	rs231954	C	T	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.018;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:113,76:0.40:189
chr6	155750038	rs1413752	C	T	2819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-0.207;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:115,75:0.39:190
chr6	155750219	rs231955	G	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	155761246	rs3749930	G	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr6	155774608	rs34960420	C	T	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:193,130:0.40:323
chr6	155775980	rs12195525	G	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:102,80:0.44:182
chr6	155776948	rs60380588	C	T	4694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-0.555;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:247,243:0.50:490
chr6	157100698	.	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=0.740;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr6	157101072	rs1261893	A	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	157256549	.	A	G	1214.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr6	157405761	rs3734440	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	157405930	rs3734441	G	A	10839.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:17,445:0.96:462
chr6	157488357	rs9384530	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-0.019;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr6	157507504	rs113430057	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr6	157519832	rs112324115	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr6	157519938	rs112318565	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	157739948	rs75220664	T	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr6	157743716	rs146925871	A	G	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	157743851	rs142241353	C	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.945;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr6	157744588	rs4708868	C	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	157950088	rs17541624	G	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	157950346	rs9457707	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	157963550	rs17165416	T	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr6	157963743	rs2365611	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:103,82:0.44:185
chr6	157963842	rs2886421	C	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr6	158014255	rs905924	C	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	158049351	rs66974557	CT	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.134;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr6	158068481	rs616538	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-1.719;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	158074504	rs636169	A	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	158322886	rs11367433	CT	C	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.468;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.922;QD=9.46;ReadPosRankSum=0.963;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr6	158327269	rs9365567	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr6	158330765	rs3211067	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,50:0.42:120
chr6	158331150	rs2076573	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr6	158356935	rs16900518	T	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=0.484;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	158357201	rs724897	T	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	158358654	rs144090871	GAAAC	G	1882.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr6	158359813	rs11324404	GA	G	2101.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:82,61:0.43:143
chr6	158359817	rs113710023	T	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr6	158361899	rs912879	C	T	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	158438910	rs111970138	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr6	158438933	rs1109511	G	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.616;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr6	158450074	rs143503873	C	CCCTGCAGAGGGTGGGCCCTGGGTCT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.602;QD=11.70;ReadPosRankSum=0.998;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr6	158464416	rs61739884	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,64:0.47:136
chr6	158475941	rs2296510	T	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	158485536	rs75376519	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	158485583	rs113215571	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr6	158487406	rs1009012	A	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	158487734	rs3215807	C	CT	1181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.256;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:63,55:0.47:118
chr6	158489501	rs78786656	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.545;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr6	158489778	rs2296509	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr6	158492605	rs13197160	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,86:0.44:194
chr6	158495863	rs12203105	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	158502527	rs1744177	C	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	158502590	rs173263	C	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	158505088	rs1744173	A	G	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr6	158505241	rs1750036	G	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	158507840	rs1744170	C	T	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	158509750	rs350289	A	G	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	158517308	rs2502601	A	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr6	158517451	rs2502600	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-3.093;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	158535720	rs150169784	T	TTATAAAATGAGATAATACATTCAAGGAA	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=131.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	158536116	rs2502604	A	T	208.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	158571501	rs6929274	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.453;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.276;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr6	158571655	rs6929520	G	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.534;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	158571706	rs6933878	G	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	158591619	rs6931532	T	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	158611655	rs9459639	A	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr6	158611904	rs34815722	AGT	A	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr6	158611969	rs9459642	G	A	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.190;QD=7.38;ReadPosRankSum=0.649;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:66,48:0.42:114
chr6	158735087	rs9364951	C	T	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	158735090	rs7756620	T	C	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	158870081	rs705956	A	G	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	158870278	rs341136	T	G	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr6	158873023	rs341139	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.679;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	158873376	rs827958	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	158882836	rs587385	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr6	158902468	rs10499309	C	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr6	158910491	rs2274884	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	158910543	rs2274883	T	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	158914825	rs17504313	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,87:0.57:152
chr6	158923434	rs9364968	G	C	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:231,216:0.48:447
chr6	158923878	rs35426837	G	A	4527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.274;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:181,235:0.56:416
chr6	158924088	rs914690	T	C	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr6	158925267	rs17504643	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	158927651	rs3828712	A	G	2558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=2.755;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:137,131:0.49:268
chr6	158993341	rs34964890	CATA	C	2977.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	158994577	rs4709217	T	G	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	159028476	rs3734475	G	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	159028488	rs3734474	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	159029237	.	CAGGTGCTGACCCCGCAGAGGTATGGGGTGCTCTCTGCT	C	1004.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr6	159029250	rs141605677	C	T	183.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	159029342	rs6925091	G	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:115,80:0.41:195
chr6	159029802	rs114366233	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr6	159046076	rs6905898	T	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	159047382	rs34976165	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr6	159047536	rs16900886	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr6	159049367	rs4708800	T	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:118,144:0.55:262
chr6	159050632	rs36092159	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	159050889	rs2278612	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.911;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:37,34:0.48:71
chr6	159058659	rs35378330	A	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr6	159065758	rs2306751	C	G	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr6	159128430	rs59396937	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.401;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	159166486	rs6914168	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	159181885	rs3127155	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	159183351	rs9347251	T	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	159184462	rs2291387	A	G	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	159185427	rs7775997	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	159185563	rs3123101	T	A	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	159188128	rs2242318	A	G	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	159191788	rs3212308	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	159192045	rs1038537	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	159192575	rs3127181	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	159197371	rs9346767	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	159204426	rs7769862	T	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	159204786	rs3123111	C	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	159205475	rs3127217	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	159205632	rs9364995	C	T	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	159205668	rs3103003	G	A	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	159210662	rs140055516	TTTTC	T	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	159262735	rs73013670	G	A	8447.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr6	159291490	rs6455609	G	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	159316430	rs9457507	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	159407208	rs28627682	G	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr6	159414687	rs80307831	G	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	159420545	rs61750776	G	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr6	159420574	rs10945587	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr6	159458020	rs370376182	C	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,76:0.49:155
chr6	159461931	rs2073138	C	T	379.84	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr6	159461944	rs6915175	A	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	159590734	rs295332	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	159618303	rs371373	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	159642860	rs419281	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	159646853	rs389041	G	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	159647584	rs12110595	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	159650978	rs509648	A	G	1673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.898;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.91;ReadPosRankSum=-0.020;SOR=0.201;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr6	159652840	rs560990	A	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	159652931	rs420137	G	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	159654408	rs73799344	G	A	9221.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr6	159654487	rs404435	G	T	13529.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr6	159654551	rs370434	C	G	14931.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr6	159654720	rs115529940	G	C	5941.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:307,302:0.50:609
chr6	159654994	rs402388	A	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	159655084	rs420054	C	G	4406.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr6	159655102	rs436743	A	G	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	159655326	rs3003174	T	C	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr6	159655383	rs2501176	A	G	28592.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr6	159655402	rs2932988	A	G	31008.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.80;ReadPosRankSum=0.882;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,759:1.00:760
chr6	159655593	rs2501177	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	159657195	rs420339	G	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	159659481	rs419836	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	159659523	rs450538	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	159660506	rs11966487	T	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr6	159660779	rs141435210	GCCACCACCCGCCGCACGA	G	3693.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	159660879	rs386360	C	A	6152.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.056;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.987;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.140;QD=26.41;ReadPosRankSum=0.395;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:2,231:0.99:233
chr6	159669953	rs28487880	G	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.084;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	159670276	rs294907	A	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	159689004	rs560889	C	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	160106088	rs2758332	C	A	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.053;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:46,44:0.49:90
chr6	160113599	rs5746099	T	G	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:219,224:0.51:443
chr6	160113872	rs4880	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr6	160114295	.	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=4.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.076;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:84,52:0.38:136
chr6	160114360	.	GC	G	195.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.849;QD=13.05;ReadPosRankSum=1.531;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	160133957	rs752779	G	A	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:103,109:0.51:212
chr6	160159907	rs6930976	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.748;QD=8.89;ReadPosRankSum=-1.550;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	160182749	rs2277073	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	160182845	rs2277072	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	160183325	rs2273819	G	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	160196296	rs41292466	T	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr6	160199084	rs200783283	AC	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.637;QD=6.29;ReadPosRankSum=0.751;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr6	160199094	rs116747985	G	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-1.186;QD=12.76;ReadPosRankSum=0.502;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	160199424	rs34047044	TA	T	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr6	160199453	.	GTT	G	131	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=3;HapScore=2;MGOF=54;MMLQ=17;MQ=59.53;NF=1;NR=4;PP=131;QD=36.2560574472;SC=ACTTCCCAAGGTTTAAAAAAA;SbPval=0.41;Source=Platypus;TC=10;TCF=1;TCR=9;TR=5;WE=160199462;WS=160199443;set=Platypus	GT:AD:AF:DP	1/1:5,5:0.50:10
chr6	160199687	rs15982	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr6	160201295	rs2295901	C	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr6	160201677	rs3818300	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	160205818	rs148932615	T	C	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:110,101:0.48:211
chr6	160205991	rs1547093	C	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	160210318	rs374454492	G	A	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:126,103:0.45:229
chr6	160221279	rs71927633	GCGTGGGCAGCA	G	2231.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	160221338	rs148594392	C	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr6	160221475	rs733319	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	160221992	rs35619423	CTTT	C	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	160222013	.	A	T	103.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	160224346	rs2146163	T	C	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	160224452	rs116181046	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr6	160225559	rs9364536	G	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	160229661	rs11966688	C	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	160229702	rs11969202	A	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.13;ReadPosRankSum=-0.648;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	160229712	rs11969728	T	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.727;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr6	160232580	rs115269477	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.092;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr6	160232891	rs142544424	G	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr6	160234625	rs13220869	G	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-2.632;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:137,95:0.41:232
chr6	160237190	.	C	CA	1063.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.136;QD=36.67;ReadPosRankSum=0.518;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:2,27:0.93:29
chr6	160237192	.	C	G	419	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=6;HapScore=2;MGOF=98;MMLQ=24;MQ=53.85;NF=0;NR=13;PP=419;QD=34.9054778882;SC=TCCCCACCCCCCCACACCCCT;SbPval=1.0;Source=Platypus;TC=17;TCF=2;TCR=15;TR=13;WE=160237200;WS=160237178;set=Platypus	GT:AD:AF:DP	1/0:4,13:0.76:17
chr6	160237192	.	C	CCG,CCGCCACACCCCTCCCCACCCACCCG	1024.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.74;MQRankSum=-0.000;QD=93.16;ReadPosRankSum=1.602;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:2,5,4:0.45,0.36:11
chr6	160237489	rs2342480	T	C	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	160237662	rs199990987	CTT	C	249.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:5,9:0.64:14
chr6	160239835	rs9347350	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	160241440	rs7775650	G	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr6	160328227	rs147698240	G	A	2193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-1.949;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:99,110:0.53:209
chr6	160328620	rs220721	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr6	160390271	.	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.303;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	160465456	rs3822842	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.13;ReadPosRankSum=1.815;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr6	160465466	rs8191788	T	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.71;ReadPosRankSum=-0.913;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	160465486	rs66749494	TTGTC	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.53;ReadPosRankSum=1.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr6	160465753	rs609207	T	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	160468180	rs2282137	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:86,101:0.54:187
chr6	160468278	rs998075	A	G	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	160468309	rs6413491	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:94,82:0.47:176
chr6	160468383	rs998074	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	160483006	rs74895070	A	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr6	160493117	rs2297360	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr6	160493834	rs2230044	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr6	160494409	rs629849	A	G	10281.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr6	160496817	rs2297361	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr6	160497102	rs75070060	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr6	160499213	rs115583758	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr6	160505199	rs614754	C	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	160511250	rs1050026	T	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	160517481	rs1803989	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr6	160524671	rs2297369	A	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	160543123	rs1867351	T	C	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:143,181:0.56:324
chr6	160543495	rs73598470	C	T	253.98	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr6	160551093	rs4646272	T	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr6	160551204	rs683369	G	C	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	160553306	rs34134157	C	T	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:122,130:0.52:252
chr6	160557408	rs34990289	G	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr6	160557515	rs2282142	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr6	160557643	rs2282143	C	T	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:194,166:0.46:360
chr6	160557704	rs35235578	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:106,116:0.52:222
chr6	160560845	rs628031	A	G	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	160560897	rs113569197	CTGGTAAGT	C	2535.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr6	160577063	rs78899680	G	T	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:130,109:0.46:239
chr6	160579596	rs16891138	A	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,94:0.51:185
chr6	160645832	rs316003	C	T	3217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.429;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:215,173:0.45:388
chr6	160645921	rs3219197	C	CT	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr6	160663420	rs8177517	T	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.195;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:86,77:0.47:163
chr6	160668186	rs3219195	CCT	C	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr6	160668389	rs2279463	A	G	1774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.31;ReadPosRankSum=1.033;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr6	160670282	rs316019	A	C	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	160769423	rs555754	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	160769811	rs668871	C	T	8213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=2.115;SOR=0.427;set=HC	GT:AD:AF:DP	1/1:3,329:0.99:332
chr6	160830047	.	C	CTTT	78.73	.	AC=1;AF=0.500;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;QD=9.84;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	160831890	rs8187720	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr6	160831939	rs16891579	T	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	160869028	.	A	G	21	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=21;QD=27.8856062736;SC=AAAACCCTCCAGAGCTAGATA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=160869036;WS=160869018;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	160899680	rs138758230	TC	T	632.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr6	160908322	rs77302992	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr6	160908367	rs114936552	T	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr6	160908402	rs112272783	G	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr6	160908426	rs113040958	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr6	160908518	rs111748632	T	C	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:67,101:0.60:168
chr6	160913932	rs7749199	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr6	160953475	rs41266373	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr6	160958864	rs148143880	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr6	160962235	rs41266348	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr6	160963771	rs76062330	C	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr6	160963968	rs142603895	AAC	A	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr6	160969629	rs1801693	A	G	2224.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;MQRankSum=-0.223;QD=24.72;ReadPosRankSum=0.982;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr6	161007496	rs7765781	G	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr6	161007538	rs7765803	G	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr6	161010766	rs7453899	A	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr6	161097590	rs12525588	A	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr6	161132146	rs4757	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr6	161135708	rs4252103	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	161136058	rs4252105	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	161137779	rs14224	T	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr6	161139480	rs1130656	C	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr6	161139502	rs2295368	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr6	161154955	rs1317026	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr6	161159366	rs4252152	T	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-0.180;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	161160083	rs2859879	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	161162553	rs185249460	T	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=1.383;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	161162553	.	TG	AA	95	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=95;QD=49.4892916207;SC=TATCCATGAATGTGGTCCACC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=3;WE=161162562;WS=161162543;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr6	161162554	rs188764308	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=1.383;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr6	161173946	rs11060	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:99,70:0.41:169
chr6	161413041	rs78823261	G	A	3169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.005;QD=14.67;ReadPosRankSum=-0.859;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:130,86:0.40:216
chr6	161413044	.	A	ACCG	1353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.005;QD=6.33;ReadPosRankSum=-0.591;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:133,81:0.38:214
chr6	161455491	rs9458105	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr6	161469455	rs9346846	T	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	161469774	rs4559074	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	161502094	rs9347479	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	161509003	rs9355332	T	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	161515038	rs9458119	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	161519350	rs5881391	CCTG	C	5468.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:18,213:0.92:231
chr6	161531006	rs4709493	G	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr6	161532855	rs35961625	CT	C	3260.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:170,146:0.46:316
chr6	161537747	rs116544468	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	161557703	rs6455706	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	161557729	rs57680325	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr6	161557775	rs3734463	C	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	161575127	rs142764194	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr6	161582053	rs113134548	C	CGTGGGAGTGA	3135.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:131,78:0.37:209
chr6	161582535	rs6934457	T	C	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	161653058	rs16892335	A	G	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-2.266;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:90,84:0.48:174
chr6	161771037	rs62637702	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=2.201;QD=4.54;ReadPosRankSum=-0.026;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr6	161771361	rs74497568	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr6	161791076	rs35280474	C	T	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	161970150	.	ATGTGTGTG	A,ATG	1716.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=56;set=Intersection	GT:AF:DP	1/2:0.19,0.81:43
chr6	161990286	rs113114509	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr6	161990483	rs3765474	C	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	161990516	rs3765475	G	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	162137099	rs112078090	CATCTT	C	3529.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	162137147	rs77332950	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	162475167	rs9456735	T	G	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:122,98:0.45:220
chr6	162622304	rs4709583	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	162622366	rs76574117	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.85;ReadPosRankSum=-0.489;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	162864317	rs2075923	A	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-1.143;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	162864638	.	C	G	175.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	163149339	rs115890909	G	A	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,68:0.43:159
chr6	163149497	rs2276201	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	163235158	rs111431655	A	AT	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.494;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr6	163235351	rs199913677	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr6	163418400	rs11964205	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.352;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr6	163587315	rs55803468	A	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:67,85:0.56:152
chr6	163611912	rs80309184	C	T	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:89,90:0.50:179
chr6	163836057	.	GCGCGGTGCCGGCCGC	G	143	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	163836391	rs199723496	C	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.745;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr6	163837086	rs5881531	TGGG	T	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.83;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	163899794	rs36093967	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.060;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr6	164891966	rs199851442	GTCTT	G	3212.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	164892060	rs200184425	CCCTT	C	329.74	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=36.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	165693624	rs1413100	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.375;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr6	165694945	rs1333501	C	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	165703523	rs17856754	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.208;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr6	165706682	rs9459349	T	A	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	165706935	rs9459350	C	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	165711405	rs79589332	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,59:0.43:138
chr6	165712866	rs78602123	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr6	165713917	rs17852379	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	165713961	rs510579	A	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	165713998	rs573814	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	165715006	rs479273	G	A	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-1.033;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr6	165715460	rs9459355	G	C	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	165715673	rs9459356	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	165723166	rs575424	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr6	165806114	rs220794	A	C	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:95,114:0.55:209
chr6	165808605	rs220792	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr6	165827194	rs220749	A	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	165832227	rs220740	C	T	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.658;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:78,68:0.47:146
chr6	165845041	rs13193003	C	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	165863695	rs57550533	C	CA	3384.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=36.01;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	165989776	rs1410479	C	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	165989849	rs73022128	T	C	2324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=1.088;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:87,116:0.57:203
chr6	166075362	rs6456003	G	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	166307718	rs6456029	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr6	166308090	rs2140232	AT	TC	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;JOINED;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr6	166401464	rs149079607	C	CGT	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.149;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr6	166401512	rs697475	T	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	166572005	rs3816300	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr6	166574246	rs3127334	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	166576229	rs9459597	G	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.846;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.508;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr6	166576233	.	TC	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.39;ReadPosRankSum=-1.543;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr6	166576239	.	T	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-1.973;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	166576242	.	A	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.60;ReadPosRankSum=-0.887;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,1:0.12:8
chr6	166577959	rs2305088	G	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	166578025	rs9459599	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.980;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr6	166579270	rs2305089	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-0.921;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:73,62:0.46:135
chr6	166580188	rs1056048	G	A	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:265,257:0.49:522
chr6	166581147	rs3099266	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	166720806	rs911203	G	C	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	166721211	rs13204594	G	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr6	166721224	rs7757150	C	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	166721424	rs13205770	C	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	166736362	rs7088	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr6	166737980	rs4710041	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:179,130:0.42:309
chr6	166739684	rs10806847	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	166741921	rs9459653	T	A	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	166743760	rs9348119	G	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	166755975	rs10862	T	C	16900.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr6	166755979	rs11168	A	C	17047.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr6	166796433	rs1546854	C	A	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	166826255	rs909631	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr6	166826304	rs760670	T	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:91,99:0.52:190
chr6	166827436	rs2235295	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr6	166831580	.	G	GA	24	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.4998;HP=15;HapScore=2;MGOF=11;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=24;QD=14.5;SC=TCCATTTCAAGAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=6;TCF=3;TCR=3;TR=2;WE=166831588;WS=166831570;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr6	166831694	rs10946164	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr6	166844118	rs9459667	G	A	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:227,179:0.44:406
chr6	166844133	rs9459668	C	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:197,145:0.42:342
chr6	166845823	rs76089036	T	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr6	166846050	rs9459670	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr6	166846104	rs9459671	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	166862136	rs7746519	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	166862233	rs2230730	T	C	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:121,94:0.44:215
chr6	166862431	rs6932660	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	166889160	rs2235278	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr6	166889281	rs4373344	T	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr6	166889331	rs3830731	CAG	C	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr6	166903983	rs2072831	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	166917844	rs2071941	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	166921636	rs377334705	G	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr6	166952264	rs1003857	G	A	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	167040311	rs10946178	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.952;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	167040463	rs10946179	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr6	167271711	rs943687	T	C	10209.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.09;ReadPosRankSum=0.411;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:2,289:0.99:291
chr6	167271716	rs9347162	T	C	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=1.336;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:119,156:0.57:275
chr6	167344583	rs13213697	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr6	167357368	rs141971027	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	167361835	.	GA	G	45.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.52;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	167365862	rs13214856	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	167411287	.	A	G	1378	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=4;MGOF=48;MMLQ=25;MQ=58.69;NF=20;NR=5;PP=1378;QD=56.5108485019;SC=TCACAGACAGAAACACAGAGA;SbPval=0.89;Source=Platypus;TC=46;TCF=32;TCR=14;TR=25;WE=167411309;WS=167411277;set=Platypus	GT:AD:AF:DP	0/1:21,25:0.54:46
chr6	167411401	rs73024236	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=8.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.177;SOR=1.510;set=HC	GT:AD:AF:DP	0/1:188,24:0.11:212
chr6	167413539	rs12212247	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr6	167424293	rs1322077	T	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr6	167435798	.	C	CACAA	160	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=18;MQ=60.42;NF=4;NR=2;PP=160;QD=30.1666666667;SC=GTTGCACACACACAGGTTTGA;SbPval=0.3;Source=Platypus;TC=11;TCF=9;TCR=2;TR=6;WE=167435806;WS=167435788;set=Platypus	GT:AD:AF:DP	1/0:5,6:0.55:11
chr6	167436159	rs3752520	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr6	167440128	rs2282861	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr6	167440244	rs2282860	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-1.815;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr6	167453519	rs368396376	A	AT	1026.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=1.424;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,63:0.85:74
chr6	167571048	rs6902566	T	C	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	167584353	rs201194115	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.86;MQRankSum=-2.943;QD=16.69;ReadPosRankSum=1.238;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr6	167587493	rs201243713	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-6.115;QD=0.49;ReadPosRankSum=-3.719;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:183,31:0.14:214
chr6	167590454	rs71571482	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-6.090;QD=0.86;ReadPosRankSum=-0.532;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr6	167590541	rs3737098	G	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=50.48;MQRankSum=-3.914;QD=3.72;ReadPosRankSum=-0.309;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:141,55:0.28:196
chr6	167590574	rs2989541	G	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.60;QD=25.91;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	167592464	rs60509455	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	167592524	rs2989545	T	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	167592576	rs60976240	G	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	167592656	rs4710193	G	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	167595183	rs377058325	T	C	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	167595449	rs139049693	A	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.75;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	167610034	.	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=-1.455;QD=2.72;ReadPosRankSum=0.159;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	167622105	rs28661326	A	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.58;QD=24.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	167622205	rs28588506	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.85;QD=24.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	167622389	rs6931756	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	167622419	rs6936429	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=2.533;QD=3.85;ReadPosRankSum=0.045;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr6	167704944	rs2076005	T	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr6	167704994	rs36110805	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr6	167711243	rs1555032	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	167711418	rs1555033	A	G	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:116,120:0.51:236
chr6	167721253	rs3817768	C	G	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:220,238:0.52:458
chr6	167728715	rs7739457	C	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr6	167728774	rs663606	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.67;QD=26.73;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	167728791	rs7739897	G	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=49.83;MQRankSum=0.757;QD=6.39;ReadPosRankSum=-0.917;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr6	167738532	rs12527488	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr6	167738576	rs7743050	T	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr6	167738668	rs12526094	G	A	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.561;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:81,91:0.53:172
chr6	167738764	rs55828527	T	C	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=1.558;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr6	167738838	rs58672528	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr6	167741578	rs149084989	C	CTG	741.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr6	167752058	rs73266976	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr6	167752086	rs59471721	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr6	167752274	rs34350976	C	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr6	167752312	.	GTTCC	GTTCCTTCCTTCC,G	88.19	.	AC=2,0;AF=1.00,0.00;AN=2;DP=55;set=Intersection	GT:AF:DP	1/1:1.00:3
chr6	167753519	rs73266991	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr6	167753691	rs877653	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr6	167753993	rs6936639	T	C	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:112,154:0.58:266
chr6	167754661	rs909545	A	G	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr6	167754702	rs909546	C	T	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.87;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	167754702	.	CGCTGCAAA	TGCTGCAAA,TGCTGCAAC	854	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=52,16;NR=30,12;PP=854,433;QD=10.8386733237;SC=CCAACATCGACGCTGCAAAAA;SbPval=0.54;Source=Platypus;TC=82;TCF=52;TCR=30;TR=82,28;WE=167754718;WS=167754692;set=Platypus	GT:AF:DP	0/1:1.00:82
chr6	167754710	rs41266331	A	C	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.603;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:118,64:0.35:182
chr6	167772755	rs61091709	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr6	167772927	rs56283623	G	A	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:74,93:0.56:167
chr6	167786551	rs146852129	T	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-1.089;QD=12.18;ReadPosRankSum=0.876;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	167786554	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-1.089;QD=12.18;ReadPosRankSum=0.876;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	167786961	rs151165498	G	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-1.138;QD=21.54;ReadPosRankSum=0.983;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr6	167786961	.	GGC	TGT	1551	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=53.04;NF=6;NR=32;PP=1551;QD=42.2228388122;SC=TAAGTCAGTGGGCGCGGCTGA;SbPval=0.53;Source=Platypus;TC=65;TCF=10;TCR=55;TR=38;WE=167786971;WS=167786951;set=Platypus	GT:AD:AF:DP	0/1:27,38:0.58:65
chr6	167786963	rs201342351	C	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-1.045;QD=21.88;ReadPosRankSum=0.581;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:27,35:0.56:62
chr6	167789493	rs3010590	T	C	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-2.021;QD=12.20;ReadPosRankSum=-2.144;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,73:0.60:121
chr6	167789590	rs3010591	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-7.146;QD=2.96;ReadPosRankSum=2.646;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr6	167789648	.	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=2.120;QD=6.68;ReadPosRankSum=-0.953;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr6	167790161	rs202061596	G	A	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.959;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-4.593;QD=12.13;ReadPosRankSum=-0.110;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr6	167796415	rs9457321	A	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr6	167907609	.	T	TAC	717.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	167907677	.	T	TAC,TACAC	2255.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.48,0.48:64
chr6	167907881	rs140818578	C	T	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,79:0.48:164
chr6	168060030	rs76012138	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.760;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	168060138	rs113701765	G	A	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr6	168060156	rs34657158	A	G	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:109,112:0.51:221
chr6	168060257	rs200326828	T	TAC	1590.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr6	168060263	rs71783781	CACACAT	C	1142.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr6	168060287	.	C	CAT	1179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=1.462;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:52,33:0.39:85
chr6	168060289	rs4708534	C	T,CAT	3368.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.59;SOR=1.395;set=HC	GT:AD:AF:DP	1/2:0,34,49:0.41,0.59:83
chr6	168060317	rs36156908	C	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.527;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr6	168060333	rs201764822	T	TACAC	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	168070483	rs9355041	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	168265102	rs2301530	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	168314997	rs11355618	AG	A	2536.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr6	168323754	rs639777	G	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	168325673	rs610670	T	C	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=2.499;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:113,118:0.51:231
chr6	168343970	rs41266287	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr6	168343997	rs41266291	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr6	168348504	rs35550837	CT	C	1410.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:59,88:0.60:147
chr6	168352105	rs2076664	G	A	14949.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr6	168355107	.	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.223;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr6	168376925	.	G	GT	238	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=2;MGOF=45;MMLQ=23;MQ=51.07;NF=0;NR=6;PP=238;QD=44.5;SC=TGCAGTGTGTGGGGAAGGAGG;SbPval=1.0;Source=Platypus;TC=27;TCF=5;TCR=22;TR=6;WE=168376937;WS=168376915;set=Platypus	GT:AD:AF:DP	0/1:21,6:0.22:27
chr6	168376953	rs2516607	A	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-1.631;QD=14.17;ReadPosRankSum=1.332;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr6	168376987	.	G	C	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-0.158;QD=14.57;ReadPosRankSum=-1.612;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr6	168377010	rs9364374	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-1.069;QD=6.76;ReadPosRankSum=-1.417;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr6	168430555	rs60520213	TA	T	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	168431475	rs149411206	C	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr6	168439381	rs116053278	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr6	168440753	rs147319134	G	A	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.065;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:35,50:0.59:85
chr6	168443159	rs78504703	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr6	168457671	rs114333228	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr6	168457801	rs3734898	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	168457869	rs144542742	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr6	168457966	rs3734899	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr6	168458074	rs3734900	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.256;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr6	168459790	rs1465182	G	C,T	2972.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.97;SOR=0.758;set=HC	GT:AD:AF:DP	1/2:0,45,48:0.48,0.52:93
chr6	168459792	rs2269680	G	A	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=-0.086;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,48:0.50:96
chr6	168459845	rs1548349	G	C	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	168462765	rs3823460	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.15;ReadPosRankSum=-1.550;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	168463538	rs369856462	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr6	168464450	rs372228355	C	T	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:207,214:0.51:421
chr6	168467238	.	C	T	329.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	168467256	.	C	T	454.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr6	168467583	.	TG	T	1031.73	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr6	168467737	rs3816861	G	A	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:193,204:0.51:397
chr6	168467776	.	G	A	3209.77	.	AC=1;AF=0.500;AN=2;DP=324;set=Intersection	GT:AD:AF:DP	0/1:158,161:0.50:319
chr6	168468176	rs12198647	G	A	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=2.129;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:39,60:0.61:99
chr6	168468186	rs6906979	G	T	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.31;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	168475764	rs9364396	G	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	168475822	rs3816859	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	168476198	rs2306943	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	168476532	.	CGTGTCCACATTTCCGGTGCCCGGTGTCCACATTTCCGGCGTCCCGTGTCCACATTTCCGGTGCCCG	C	980	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=23;MQ=62.61;NF=1;NR=8;PP=980;QD=112.777777778;SC=TCCGGCGTCCCGTGTCCACAT;SbPval=0.68;Source=Platypus;TC=25;TCF=3;TCR=22;TR=9;WE=168476605;WS=168476522;set=Platypus	GT:AD:AF:DP	1/1:16,9:0.36:25
chr6	168479568	rs78152017	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr6	168479604	rs34054991	G	A	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	168479790	rs11750985	C	T	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	168479809	rs41266315	G	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr6	168479859	rs41266317	C	T	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.594;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.58;ReadPosRankSum=0.429;SOR=2.007;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr6	168479868	rs41266319	C	T	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.654;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=1.492;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	168482110	rs4708429	C	T	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	168482329	rs4708430	C	T	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	168694594	rs7764061	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	168694756	rs73789344	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr6	168694788	rs56060091	C	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr6	168695309	rs4708710	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	168695345	rs4708711	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr6	168711797	rs899519	G	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr6	168764106	rs72353239	GGAGAGGGAGATT	G	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.23;QD=40.97;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	168842014	rs76776636	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr6	168842113	rs73270928	T	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.671;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:83,57:0.41:140
chr6	168927225	rs73257023	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	168928225	rs2224209	G	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	168928519	rs2609286	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	169008945	rs3734421	C	T	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:149,111:0.43:260
chr6	169055891	rs34108025	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr6	169065126	rs9364271	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr6	169617934	rs58423957	GA	G	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	169619933	rs113367461	T	TTTCCTTCC	3943.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.08;QD=44.31;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	169620020	rs200472296	ACT	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.69;MQRankSum=0.074;QD=13.34;ReadPosRankSum=-1.635;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	169620247	rs9393165	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	169621504	rs142840599	G	T	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,108:0.61:178
chr6	169622658	rs12664015	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr6	169623350	rs35671519	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	169625604	rs76881132	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	169626195	rs73238295	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	169626244	rs7454644	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr6	169628169	rs33928942	CAA	C	962.74	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:6,40:0.87:46
chr6	169629626	rs142990315	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr6	169629783	rs6422747	G	A	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr6	169629861	rs9505891	G	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr6	169629910	rs6422748	G	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	169632378	rs74417889	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr6	169634809	rs9393156	C	T	3248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.980;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:162,161:0.50:323
chr6	169635010	rs9406328	G	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr6	169635020	rs55916292	CA	C	1249.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr6	169637456	rs9283850	G	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr6	169637519	rs9283851	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr6	169637701	rs12661185	T	A	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr6	169637763	rs9766671	G	C	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:133,102:0.43:235
chr6	169637911	rs9766678	G	A	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:120,113:0.48:233
chr6	169637972	rs78648166	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr6	169639901	rs9379336	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr6	169639999	rs9294979	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	169642138	rs74753207	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr6	169646199	rs73046008	A	C	3905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.154;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:230,200:0.47:430
chr6	169646409	rs73046010	A	G	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr6	169648760	rs34332730	C	T	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:149,148:0.50:297
chr6	169648767	rs12178180	G	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:137,137:0.50:274
chr6	169982927	rs6941625	T	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr6	170043646	rs9295020	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr6	170049421	rs4145868	T	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr6	170061062	.	T	C	39	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=2;MGOF=19;MMLQ=24;MQ=50.85;NF=2;NR=2;PP=39;QD=18.4428031368;SC=CGTGCGCCCCTTGGCCTGGCT;SbPval=0.48;Source=Platypus;TC=16;TCF=10;TCR=6;TR=4;WE=170061070;WS=170061052;set=Platypus	GT:AD:AF:DP	1/0:12,4:0.25:16
chr6	170065425	rs73790089	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.682;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr6	170067103	rs148939169	G	GT	531.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr6	170102267	rs4716383	A	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=0.603;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:88,59:0.40:147
chr6	170110404	rs17860601	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr6	170118085	rs7760142	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	170144228	rs2027063	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr6	170159023	rs6459660	G	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-2.194;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:31,59:0.66:90
chr6	170159259	rs17860639	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr6	170176407	rs4716398	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:77,98:0.56:175
chr6	170176467	rs4716345	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:97,108:0.53:205
chr6	170176647	rs4716399	CA	TG	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;JOINED;set=Intersection	GT:AD:AF:DP	0/1:146,112:0.43:258
chr6	170179507	rs3828738	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr6	170190200	rs3807067	G	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.134;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr6	170190418	rs3823467	T	G	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr6	170190659	rs3800550	G	T	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,122:0.50:246
chr6	170592020	rs1546951	C	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.117;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr6	170592293	rs2295205	C	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr6	170592308	rs6929751	G	A	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:56,75:0.57:131
chr6	170594819	rs2255020	T	C	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	170595430	rs2747757	G	C	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	170598227	rs2747756	T	G	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	170627651	rs9460113	G	A	5631.77	.	AC=1;AF=0.500;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	0/1:433,305:0.41:738
chr6	170628231	rs7774272	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	170667530	rs3734773	C	T	319.88	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	170697699	.	G	A	630.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr6	170704444	rs7738466	C	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr6	170713503	rs4710719	C	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	170845321	rs115280226	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.60;ReadPosRankSum=-0.108;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	170845354	rs9348278	A	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	170845541	rs115338957	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr6	170855389	rs17860774	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr6	170858045	rs2076319	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr6	170862051	rs4710839	G	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr6	170862300	rs12717	G	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:73,92:0.56:165
chr6	170871013	.	A	ACAG	2989	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=1;MGOF=52;MMLQ=27;MQ=59.03;NF=26;NR=80;PP=2989;QD=20;SC=AGCAACAACAACAGCAGCAGC;SbPval=0.52;Source=Platypus;TC=122;TCF=30;TCR=92;TR=106;WE=170871021;WS=170871003;set=Platypus	GT:AD:AF:DP	0/1:16,106:0.87:122
chr6	170871037	rs71815788	GCAACAGCAA	GCAGCAA,G	4867.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=325;set=Intersection	GT:AF:DP	1/1:0.93:147
chr6	170871051	.	AGC	A	2330.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=2.746;QD=13.02;ReadPosRankSum=4.131;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:101,78:0.44:179
chr6	170871052	rs112083427	G	A	1410.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=-2.326;QD=7.58;ReadPosRankSum=2.737;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:129,57:0.31:186
chr6	170871052	.	GCAGCAG	ACAGCAG,ACAGCAA	2545	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=27;MQ=60.09;NF=43,16;NR=40,14;PP=2288,2545;QD=27.9851953319;SC=AGCAACAGCAGCAGCAGCAGC;SbPval=0.55;Source=Platypus;TC=201;TCF=104;TCR=97;TR=83,30;WE=170871068;set=Platypus	GT:AF:DP	0/1:0.41:201
chr6	170871054	.	AGCAG	A	1774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=2.935;QD=9.34;ReadPosRankSum=3.880;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:121,69:0.36:190
chr6	170875935	rs58221238	A	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr6	170878793	rs1042327	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr6	170881389	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.765;QD=0.33;ReadPosRankSum=1.296;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr6	170886531	rs8770	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.72;ReadPosRankSum=-1.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	170887693	rs3173219	G	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.477;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr6	170888208	rs960744	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	170892483	rs17860837	A	AT	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=2.137;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr6	170892848	rs4140615	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr6	170892919	rs113114915	T	TACTC	143	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	170893364	rs4140616	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=-1.755;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	209027	rs28493942	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,112:0.51:221
chr7	228659	rs73669603	A	G	5058.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:199,243:0.55:442
chr7	228712	rs73669604	A	G	6795.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:320,341:0.52:661
chr7	228780	rs73252880	C	T	10835.77	.	AC=1;AF=0.500;AN=2;DB;DP=1096;set=Intersection	GT:AD:AF:DP	0/1:540,544:0.50:1084
chr7	228813	rs75630409	G	A	10179.77	.	AC=1;AF=0.500;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	0/1:491,499:0.50:990
chr7	286468	.	G	GGACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGC	1343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=18.774;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.517;QD=17.23;ReadPosRankSum=0.240;SOR=2.646;set=HC	GT:AD:AF:DP	0/1:41,37:0.47:78
chr7	286534	rs146778412	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.084;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr7	288158	rs144201916	A	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr7	295683	rs36173688	T	TG	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr7	295769	rs146970461	C	T	11332.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:3,438:0.99:441
chr7	296557	rs36164325	T	C	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	298450	.	G	GGC	1018	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=27;MQ=59.87;NF=14;NR=4;PP=1018;QD=58.0;SC=CTGGAGATGGGTGGGATGGAC;SbPval=0.58;Source=Platypus;TC=18;TCF=14;TCR=4;TR=18;WE=298462;WS=298440;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	298454	.	GA	G	925	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=27;MQ=59.9;NF=14;NR=4;PP=925;QD=52.8333333333;SC=AGATGGGTGGGATGGACCCAC;SbPval=0.49;Source=Platypus;TC=25;TCF=20;TCR=5;TR=18;WE=298462;WS=298440;set=Platypus	GT:AD:AF:DP	1/1:7,18:0.72:25
chr7	298630	rs139144760	C	T	7826.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr7	299558	.	T	TTCTC	2345.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	299850	rs36170987	G	T	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	299881	rs36139924	A	G	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	299987	rs36138803	C	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	330104	rs147059305	C	T	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:178,146:0.45:324
chr7	330266	rs141016966	G	T	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:197,190:0.49:387
chr7	330609	rs146190797	G	A	6223.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:287,300:0.51:587
chr7	330822	rs36180337	A	C	13452.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr7	330834	rs145955450	C	T	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:194,225:0.54:419
chr7	330882	rs4077171	T	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=3.084;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	330882	.	TCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=1;HapScore=1;MGOF=30;MMLQ=24;MQ=60.0;NF=22;NR=115;PP=2947;QD=20;SC=CGCGGCGGCTTCAGGGAGGTC;SbPval=0.48;Source=Platypus;TC=140;TCF=22;TCR=118;TR=137;WE=330892;WS=330872;set=Platypus	GT:AD:AF:DP	1/1:3,137:0.98:140
chr7	330884	rs4077172	A	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=2.920;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	331427	rs141537626	C	A	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:351,353:0.50:704
chr7	540518	rs2070958	T	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr7	540741	rs1800814	G	A	8818.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:451,443:0.50:894
chr7	550399	rs192632660	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=2.79;ReadPosRankSum=1.941;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr7	550409	rs183980841	G	A	671.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=24.031;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.21;ReadPosRankSum=1.938;SOR=6.182;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr7	551940	rs374215181	T	C	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.97;ReadPosRankSum=2.569;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:36,45:0.56:81
chr7	551946	rs9692018	T	C	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=1.587;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:38,49:0.56:87
chr7	591125	rs71518309	C	G	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	618855	rs62431411	T	C	4454.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:283,232:0.45:515
chr7	618869	rs62431412	G	A	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:333,269:0.45:602
chr7	618938	rs3211362	A	G	6940.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:441,369:0.46:810
chr7	624221	rs9330368	T	G	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	624401	rs9330366	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr7	645740	rs111535904	G	GT	1345.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chr7	647234	rs112862203	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr7	647255	rs113132569	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr7	772025	rs4072597	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	772174	rs4724987	G	A	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:183,164:0.47:347
chr7	780687	rs62432212	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	780859	rs6943174	T	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	780980	rs6943337	T	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,67:0.44:152
chr7	794471	rs34761279	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr7	794576	rs62432239	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	801634	rs142752861	T	TTGAGCCCCAGGCCTCAAACATGTC	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	803342	rs4495324	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr7	808588	rs6973614	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.462;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	808810	rs6946758	C	G	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:353,307:0.47:660
chr7	810219	rs4720951	T	C	5176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=1.951;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:261,266:0.50:527
chr7	813618	rs4719279	T	C	8215.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:366,404:0.52:770
chr7	813650	rs62432869	G	A	11328.77	.	AC=1;AF=0.500;AN=2;DB;DP=1140;set=Intersection	GT:AD:AF:DP	0/1:546,567:0.51:1113
chr7	813867	rs6973746	C	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr7	814612	rs34943122	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr7	814788	rs3922641	G	A	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:102,136:0.57:238
chr7	819567	.	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr7	822523	rs4719314	A	G	7741.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:423,392:0.48:815
chr7	825114	rs67721251	T	C	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:187,151:0.45:338
chr7	855534	rs115123918	G	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr7	855835	.	G	GTGGAGACCCCTCCCCCAGGTGCAGACCCCTCCGCGA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=0.967;QD=90.58;ReadPosRankSum=0.967;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,1:0.33:3
chr7	856320	rs6959154	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	857352	rs4275123	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	872100	rs6952577	T	C	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:213,225:0.51:438
chr7	881668	rs6461378	C	T	8115.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:387,410:0.51:797
chr7	882895	rs6970511	C	G	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.240;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:32,36:0.53:68
chr7	888196	rs114165930	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr7	890978	rs7792674	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr7	891184	rs10628483	C	CGAT	7389.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	894422	rs10245785	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr7	895928	rs12534606	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr7	896142	rs4721834	C	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:80,117:0.59:197
chr7	897492	rs10950789	A	G	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:165,164:0.50:329
chr7	899710	rs12700166	A	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:78,54:0.41:132
chr7	900035	rs4276575	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr7	905755	rs114327251	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr7	905786	rs4721952	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr7	912755	rs4722034	C	T	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	916534	rs150362623	C	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr7	924132	rs7807168	C	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr7	925949	rs10226357	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr7	926077	rs10267796	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr7	926827	rs4722203	T	C	13926.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr7	933238	.	C	CACG	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.01;MQRankSum=3.585;QD=9.43;ReadPosRankSum=-0.969;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	933239	.	G	A	32	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=18;MQ=61.9;NF=4;NR=2;PP=32;QD=11.1285354245;SC=GGGCATGGGCGCGGTGTGTGC;SbPval=0.61;Source=Platypus;TC=19;TCF=13;TCR=6;TR=6;WE=933248;WS=933229;set=Platypus	GT:AD:AF:DP	1/0:13,6:0.32:19
chr7	933240	rs34784960	C	T,CGGT	1353.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/2:0.52,0.48:33
chr7	933369	rs77318420	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:136,113:0.45:249
chr7	933541	rs61747650	C	G	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:205,189:0.48:394
chr7	940181	rs10256887	C	T	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.44;QD=26.22;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	940257	rs199900149	G	GGGGCAAAGGC	2518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=61.89;MQRankSum=5.304;QD=13.33;ReadPosRankSum=-1.064;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:75,114:0.60:189
chr7	940267	rs3824079	T	C	4302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=3.907;QD=24.04;ReadPosRankSum=-0.250;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:75,104:0.58:179
chr7	940296	.	A	AGG	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.359;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:68,57:0.46:125
chr7	940298	.	CG	GG	2466	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=1.0000,0.5000;HP=2;HapScore=2;MGOF=135;MMLQ=24;MQ=60.0;NF=0,8;NR=20,18;PP=2466,556;QD=125.05;SC=GAGGCTGCAGCGCTGGGGTCC;SbPval=1.0;Source=Platypus;TC=37;TCF=0;TCR=37;TR=20,26;WE=940306;WS=940288;set=Platypus	GT:AD:AF:DP	0/1:34,26:0.43:60
chr7	940298	.	CG	CGCTGGGGTCCCCACAGAGGGG,CTGGGGTCCCCACAGAGGGG	2509.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=120;set=Intersection	GT:AF:DP	1/2:0.33,0.67:76
chr7	940501	rs72074799	AGAAGGGCC	A	1413.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	943998	rs3824077	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr7	944683	rs1881121	C	T	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	944833	rs113225936	T	C	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:99,102:0.51:201
chr7	944847	rs143989050	TG	T	3264.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:96,88:0.48:184
chr7	944863	rs28485288	A	C	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:89,81:0.48:170
chr7	944874	rs10243781	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr7	944906	.	ACACGGGGGACACG	A	1758.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr7	944907	.	CACGGGGGACACGG	C	979.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr7	944948	rs10261233	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=45.30;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	944952	rs200966272	GGA	G	2437.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	944993	.	CAGGGAA	C	987	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=3;HapScore=3;MGOF=339;MMLQ=24;MQ=56.42;NF=2;NR=16;PP=987;QD=55.7777777778;SC=GGAAGATGGGCAGGGAAAGGG;SbPval=0.6;Source=Platypus;TC=18;TCF=2;TCR=16;TR=18;WE=945013;WS=944983;set=Platypus	GT:AD:AF:DP	0/1:0,18:1.00:18
chr7	960705	rs10250309	T	C	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	967132	rs151198274	C	T	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:212,242:0.53:454
chr7	974905	rs71538121	A	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr7	974996	rs199701620	C	T	1894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.134;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:126,101:0.44:227
chr7	1012948	rs56242247	A	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr7	1015271	rs112587865	C	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr7	1023013	rs2272375	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	1023995	rs34743661	A	AG	7368.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=46.05;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	1024002	rs3735689	T	C	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=42.89;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	1024581	rs3824081	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	1026898	rs113795030	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr7	1027246	rs147635255	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr7	1039999	rs191452814	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr7	1062448	rs1057559	C	G	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:205,222:0.52:427
chr7	1062527	rs3735686	G	A	13955.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr7	1094819	rs4720335	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr7	1095099	rs138748672	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr7	1097952	rs6953080	C	T	5632.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:306,287:0.48:593
chr7	1197440	rs190064610	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	1197994	rs12702435	T	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr7	1474621	rs145154210	GC	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=27.048;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.331;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr7	1481919	rs4236408	C	A	19353.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:3,745:1.00:748
chr7	1482134	rs4457225	C	G	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:111,149:0.57:260
chr7	1484572	rs10435184	A	G	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	1484587	rs80020804	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:54,70:0.56:124
chr7	1486451	rs75056037	G	A	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:187,159:0.46:346
chr7	1486570	rs139483599	GC	G	1648.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr7	1487424	rs79384014	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:146,93:0.39:239
chr7	1513369	rs10253129	G	A	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:58,88:0.60:146
chr7	1517700	rs10265526	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr7	1518336	rs11977356	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	1519361	rs9692164	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.383;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr7	1519892	rs4546558	C	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.47;ReadPosRankSum=-1.930;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	1519946	rs7783971	A	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr7	1522157	rs10227674	T	C	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:72,91:0.56:163
chr7	1522175	rs10224038	A	G	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	1522413	rs73275946	A	T	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:123,175:0.59:298
chr7	1523559	rs10235180	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr7	1524661	.	C	G	560.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr7	1525202	rs77455613	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr7	1526181	rs6969991	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:64,83:0.56:147
chr7	1526197	rs191796992	G	A	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,95:0.57:168
chr7	1526827	rs7807096	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:69,96:0.58:165
chr7	1527687	rs10279407	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr7	1527726	rs148816147	A	C	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.76;ReadPosRankSum=-0.299;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	1527735	rs10267772	G	A	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-0.021;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	1528947	.	T	TCCCGGGCCCGCCGAGGGGACGTGCGCACTCACTTCAGGCCCTGCTCCCAGC	3206.73	.	AC=2;AF=1.00;AN=2;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=74.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chr7	1529427	rs4380839	C	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	1532631	rs10229645	G	A	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:182,203:0.53:385
chr7	1532835	.	G	A	2125.77	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:73,93:0.56:166
chr7	1533513	rs2251226	A	G	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:182,180:0.50:362
chr7	1533566	rs2251232	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr7	1534401	rs140419166	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr7	1534425	rs752791	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr7	1535051	rs892530	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr7	1536717	rs3735660	T	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr7	1538539	rs57092311	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr7	1538575	.	CCCTGCCCCG	C	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.431;QD=6.77;ReadPosRankSum=1.098;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr7	1538588	.	ACCCCCCC	A	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.462;QD=6.52;ReadPosRankSum=1.811;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr7	1538877	rs750005	A	G	4991.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:305,253:0.45:558
chr7	1539671	rs201332911	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr7	1539802	rs79440852	A	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:132,117:0.47:249
chr7	1540049	rs2304358	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr7	1542697	rs3752714	G	A	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:167,167:0.50:334
chr7	1542814	rs3752715	T	C	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr7	1543981	rs1369011	C	A	3953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-2.382;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:205,202:0.50:407
chr7	1544041	rs188715426	C	T	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:221,214:0.49:435
chr7	1574016	rs3824069	C	T	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:186,181:0.49:367
chr7	1574403	rs4720833	A	G	7306.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:462,385:0.45:847
chr7	1574562	rs4720834	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr7	1586662	rs3779607	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr7	1586866	rs3824072	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr7	1587280	rs73672624	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	1588007	rs59001762	G	A	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr7	1588391	rs3814481	A	G	8803.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:3,344:0.99:347
chr7	1588549	rs3814482	G	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:144,147:0.51:291
chr7	1588768	rs1124871	G	A	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.242;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:102,56:0.35:158
chr7	1588912	rs3890492	C	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.054;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	1589056	rs4294092	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr7	1589083	rs1865348	G	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.355;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:52,54:0.51:106
chr7	1589417	rs10237660	T	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr7	1590368	rs6463921	A	G	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.06;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	1590368	.	ACTGGCCAT	GCTGGCCAC,GCTGGCCAT	1148	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=22;MQ=60.0;NF=29,80;NR=16,45;PP=541,1148;QD=13.2103972192;SC=TGCCCTGGGGACTGGCCATGG;SbPval=0.54;Source=Platypus;TC=126;TCF=81;TCR=45;TR=45,125;WE=1590384;WS=1590358;set=Platypus	GT:AF:DP	0/1:0.36:126
chr7	1590376	rs2304360	T	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-1.931;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:112,79:0.41:191
chr7	1590443	rs2304361	T	C	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:225,223:0.50:448
chr7	1627494	rs28566035	A	G	6129.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:240,292:0.55:532
chr7	1657844	rs10225166	A	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.462;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:59,57:0.49:116
chr7	1657923	rs12702990	T	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	1703082	rs144374574	T	TG	611.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	1733182	rs79496824	C	T	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:184,197:0.52:381
chr7	1855874	rs374595397	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:33,7:0.17:40
chr7	1855877	.	CAAGA	C	116.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:26,5:0.16:31
chr7	1878377	rs3889573	A	G	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr7	1888683	.	TAC	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=7.114;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.884;QD=3.24;ReadPosRankSum=1.849;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr7	1894116	rs7810038	T	C	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:211,193:0.48:404
chr7	1914059	rs55934553	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	1914350	rs60238952	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	1937784	rs12670878	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr7	1938031	rs73288773	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:153,114:0.43:267
chr7	1976263	rs2280552	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr7	2041887	rs4721296	A	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	2119174	rs7805774	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	2252875	rs61736419	G	A	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:278,254:0.48:532
chr7	2257612	rs6951493	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr7	2258899	rs1639916	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	2260482	rs73291554	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr7	2260499	rs1637731	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:80,61:0.43:141
chr7	2260715	rs1639917	G	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr7	2269552	rs1637728	G	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	2275177	rs11547272	G	A	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:153,145:0.49:298
chr7	2275328	rs17132341	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	2278636	rs60518221	AT	A	270.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-2.658;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	2278638	.	ATATATATATATATATATATATATAT	A	588.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-2.238;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	2278650	.	ATATATATATAT	A	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=2.801;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr7	2278663	rs4721496	T	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.325;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr7	2279482	rs11984133	A	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr7	2279851	rs6962067	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	2290314	rs12699806	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=0.249;QD=12.62;ReadPosRankSum=-0.731;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	2290317	rs60298419	T	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=0.249;QD=12.51;ReadPosRankSum=-0.560;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	2290319	rs373496719	TC	T	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=0.133;QD=11.74;ReadPosRankSum=-0.350;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr7	2290328	rs10230814	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=0.219;QD=12.56;ReadPosRankSum=-0.129;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	2290336	rs10249180	T	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=0.699;QD=13.60;ReadPosRankSum=-0.474;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	2290372	rs10230822	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	2290433	rs10230928	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:109,97:0.47:206
chr7	2292881	rs3075440	C	CTG	4813.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:142,131:0.48:273
chr7	2296493	rs2302070	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr7	2296696	rs2302071	C	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr7	2297006	rs6888	A	G	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	2304191	rs2286205	A	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	2309159	rs188087387	A	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.620;QD=4.20;ReadPosRankSum=0.355;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr7	2309355	rs6947645	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr7	2315008	rs2398667	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	2349352	rs190128313	G	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.136;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr7	2349470	rs10479970	T	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:177,133:0.43:310
chr7	2349608	rs7805462	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr7	2394428	.	C	CGCG	59	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=3;HapScore=2;MGOF=21;MMLQ=22;MQ=62.65;NF=1;NR=1;PP=59;QD=41.0;SC=CCCCCCGCCCCGCGGCCTTGG;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=2394436;WS=2394418;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	2394535	.	G	A	472.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.775;QD=27.81;ReadPosRankSum=1.240;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr7	2394536	.	C	A	472.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.717;QD=24.88;ReadPosRankSum=0.702;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	2394746	rs9690787	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	2394795	.	C	A	279.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr7	2394991	rs11551167	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr7	2400306	rs953770	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr7	2402298	rs140288121	C	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:137,106:0.44:243
chr7	2403894	.	C	CA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.137;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr7	2409035	rs2301944	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	2412493	rs1548595	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr7	2414142	rs886632	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:108,101:0.48:209
chr7	2414365	rs884565	A	G	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:75,91:0.55:166
chr7	2418116	rs6461350	T	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	2418201	.	G	A	743	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=24;MQ=59.84;NF=32;NR=23;PP=743;QD=14.1412947736;SC=GCATGCGAGCGCTCCTGGGAA;SbPval=0.67;Source=Platypus;TC=110;TCF=61;TCR=49;TR=55;WE=2418209;WS=2418191;set=Platypus	GT:AD:AF:DP	1/0:55,55:0.50:110
chr7	2418645	rs6461351	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	2433495	rs80094581	G	A	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:215,232:0.52:447
chr7	2434522	rs1978169	G	A	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:171,234:0.58:405
chr7	2434594	.	ATT	A,AT	511.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.537;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.43;MQRankSum=0.598;QD=13.47;ReadPosRankSum=-1.092;SOR=0.330;set=HC	GT:AD:AF:DP	1/2:3,18,17:0.47,0.45:38
chr7	2472599	rs17132395	C	A	6611.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:266,310:0.54:576
chr7	2472662	rs11537796	G	C	9008.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:489,458:0.48:947
chr7	2515382	rs5881927	G	GC	15025.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr7	2552806	rs139214722	G	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr7	2552881	rs34637446	A	AGATG	5561.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:202,150:0.43:352
chr7	2557266	rs755179	T	C	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.089;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:67,73:0.52:140
chr7	2564849	rs62444250	A	G	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:182,182:0.50:364
chr7	2565268	rs893239	C	A	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:154,142:0.48:296
chr7	2577781	rs1043291	T	C	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:111,89:0.45:200
chr7	2578237	rs4719552	T	C	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:275,220:0.44:495
chr7	2578434	rs4721763	G	T	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:249,192:0.44:441
chr7	2580377	rs140871737	T	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr7	2581994	rs3735104	T	C	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:156,160:0.51:316
chr7	2582153	rs138295649	C	CCCCCAGCCTCCCGGGTGT	9685.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	2582233	rs3735106	A	G	6502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=61.24;MQRankSum=-1.876;QD=9.59;ReadPosRankSum=-2.192;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:357,321:0.47:678
chr7	2582381	rs61673178	T	A	11698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=1319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-2.928;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:683,608:0.47:1291
chr7	2582452	rs6972204	T	C	7900.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:443,394:0.47:837
chr7	2583172	.	G	A	2881.77	.	AC=1;AF=0.500;AN=2;DP=335;set=Intersection	GT:AD:AF:DP	0/1:185,144:0.44:329
chr7	2583656	rs11267702	GGCAGAGGGCCTCAGGGAAGATACAAATA	G	1087.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr7	2587122	rs2164688	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr7	2598757	rs6963930	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.556;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr7	2598908	rs34580685	T	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.549;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr7	2604727	rs144717520	T	TGTGC	1547.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr7	2604767	.	AGTGT	A,AGT	4959.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.230;QD=24.08;ReadPosRankSum=-2.218;SOR=0.802;set=HC	GT:AD:AF:DP	1/2:4,111,91:0.54,0.44:206
chr7	2604890	rs139694552	CGT	C	2716.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:103,93:0.47:196
chr7	2611878	rs2917751	T	C	6456.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:374,337:0.47:711
chr7	2611890	rs61736333	C	T	6813.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:297,341:0.53:638
chr7	2612294	rs2969042	TC	AA	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;JOINED;set=Intersection	GT:AD:AF:DP	0/1:164,128:0.44:292
chr7	2613042	rs2304540	G	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	2618070	rs3214664	C	CA	17159.73	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr7	2619334	.	GGTGT	G,GGT	4031.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=4.891;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.923;QD=21.68;ReadPosRankSum=0.687;SOR=1.176;set=HC	GT:AD:AF:DP	1/2:20,31,135:0.17,0.73:186
chr7	2619363	rs2917739	G	C	7241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=8.130;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.313;QD=37.52;ReadPosRankSum=1.718;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:2,191:0.99:193
chr7	2621567	rs7798469	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.43;QD=25.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	2623351	rs13242369	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	2623801	rs73033665	G	T	7112.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	2626038	rs3217437	CCAGGGAATGG	C	527.74	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr7	2627310	rs2917733	T	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	2627578	rs150431779	CAG	C	4179.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	2632477	rs2917730	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	2636689	rs12700146	C	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr7	2638347	rs12700147	C	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	2640897	rs2969057	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	2640985	rs4506100	G	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	2644504	rs199498496	T	C	7322.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:348,366:0.51:714
chr7	2644679	rs56246161	G	A	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:161,201:0.56:362
chr7	2645552	rs2293407	A	G	2482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-1.077;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:231,142:0.38:373
chr7	2646723	rs1464967	A	G	2511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=1.581;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:133,132:0.50:265
chr7	2646746	.	G	GT	2879.73	.	AC=1;AF=0.500;AN=2;DP=327;set=Intersection	GT:AD:AF:DP	0/1:163,157:0.49:320
chr7	2646950	rs1056568	T	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr7	2646966	.	G	A	641.77	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr7	2647048	rs12700160	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	2649673	rs3735108	T	C	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:188,141:0.43:329
chr7	2649704	rs3735109	T	G	4141.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:334,230:0.41:564
chr7	2649819	rs3735110	C	T	6200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.255;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.312;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:404,327:0.45:731
chr7	2685369	rs10233182	G	C	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:124,169:0.58:293
chr7	2686525	rs148208032	C	T	9618.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:418,483:0.54:901
chr7	2686761	rs3801079	G	C	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr7	2687714	rs142160106	G	A	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:89,75:0.46:164
chr7	2687727	rs147393652	G	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:79,59:0.43:138
chr7	2689472	rs3801077	A	C	17514.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,675:1.00:675
chr7	2689577	rs149229320	G	A	6112.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:359,314:0.47:673
chr7	2691736	rs35868808	A	G	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:125,104:0.45:229
chr7	2692806	rs6461505	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	2695617	rs2286690	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr7	2697881	rs2302342	G	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr7	2698052	rs145186712	C	T	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:313,285:0.48:598
chr7	2698459	rs116693587	A	C	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:145,117:0.45:262
chr7	2699524	rs139527284	ACT	A	662.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.993;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:532,71:0.12:603
chr7	2699687	rs56409742	C	CG	17002.73	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	2752487	rs7776970	G	A	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	2773035	rs34004158	C	CAT	3269.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:108,87:0.45:195
chr7	2773223	rs114892473	T	A	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:134,138:0.51:272
chr7	2802291	rs10487576	T	C	7544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.811;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:303,404:0.57:707
chr7	2834577	rs2230878	T	C	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr7	2834754	rs2230877	T	C	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:186,206:0.53:392
chr7	2854010	rs2644275	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr7	2946461	rs1124581	T	C	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr7	2954801	rs1182157	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	2955097	rs2301920	C	T	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr7	2957005	rs3735124	T	C	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.779;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr7	2958298	rs3735125	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr7	2962241	rs3735130	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	2971977	rs5881948	T	TG	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	2972072	rs1636167	A	G	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:71,116:0.62:187
chr7	2998044	rs41490647	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr7	3179968	rs7779230	T	G	10931.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr7	3179973	rs7791857	G	C	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	3179991	rs7779245	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	3180657	rs6964682	C	T	9002.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr7	3187085	rs6954885	T	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	3197699	rs75126174	G	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=-0.869;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	3197788	rs73672278	G	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	3197867	rs4634530	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr7	3205705	rs10951088	T	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	3205763	rs10951089	A	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	3341390	rs10228086	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	3681466	rs137956340	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr7	3681615	rs78444417	C	G	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:200,172:0.46:372
chr7	3861333	rs10240325	G	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr7	3990657	rs34775958	C	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr7	3991246	rs116276786	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr7	3998588	rs61735677	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:71,48:0.40:119
chr7	4006856	rs76005784	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	4026944	rs7785899	C	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	4026995	rs115766906	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr7	4050512	rs11979817	T	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr7	4050753	rs11979185	A	C	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr7	4051677	rs894776	G	A	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:171,142:0.45:313
chr7	4089103	rs7794939	G	T	12008.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr7	4107697	rs10226642	A	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.524;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr7	4116757	rs139876846	C	T	9342.77	.	AC=1;AF=0.500;AN=2;DB;DP=1031;set=Intersection	GT:AD:AF:DP	0/1:539,476:0.47:1015
chr7	4118978	rs138579749	C	CT	1196.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr7	4118993	rs7789115	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:80,91:0.53:171
chr7	4119285	rs1880860	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	4152848	rs141742046	C	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:155,134:0.46:289
chr7	4153824	rs2141076	A	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:77,89:0.54:166
chr7	4169641	rs7785808	G	A	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:191,232:0.55:423
chr7	4172075	rs112641730	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:139,102:0.42:241
chr7	4185484	rs148966727	C	T	4780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.053;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:252,247:0.49:499
chr7	4185592	rs608271	A	G	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr7	4189075	rs659182	G	C	16935.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:2,658:1.00:660
chr7	4213749	rs4723444	T	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr7	4213877	rs601424	T	C	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:174,139:0.44:313
chr7	4213940	rs671756	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:134,103:0.43:237
chr7	4213975	rs671694	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	4214041	rs4723445	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.633;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr7	4214046	rs600537	T	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.049;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr7	4245665	rs6979520	T	C	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:237,185:0.44:422
chr7	4245805	rs6462650	G	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr7	4247745	rs143290843	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,86:0.53:163
chr7	4247880	rs6952612	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,60:0.43:140
chr7	4249478	rs74494101	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	4249531	rs17134618	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr7	4249625	rs114413870	T	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,92:0.49:188
chr7	4259953	rs13224192	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr7	4267047	rs17134638	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr7	4285553	rs116722524	G	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:81,96:0.54:177
chr7	4304727	rs10270413	A	G	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=1.746;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:102,82:0.45:184
chr7	4308360	rs11981816	C	T	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:164,161:0.50:325
chr7	4490854	rs314605	C	T	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	4490935	rs369198	C	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	4491006	rs77168050	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	4714912	rs28631893	C	T	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:313,268:0.46:581
chr7	4715012	.	G	GT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.609;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:65,23:0.26:88
chr7	4780450	rs199651186	GCTC	G	4976.73	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:311,269:0.46:580
chr7	4782596	rs116110248	A	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	4791275	rs74501789	G	A	4742.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:245,234:0.49:479
chr7	4791349	rs77670404	G	A	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:157,148:0.49:305
chr7	4791392	rs55638183	C	G	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr7	4794817	rs111377663	A	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:71,81:0.53:152
chr7	4799300	rs11980294	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr7	4802029	rs6976790	T	G	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	4802035	rs1053753	A	G	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	4803789	rs113088121	G	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	4803923	rs116018034	C	T	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:223,185:0.45:408
chr7	4803946	rs114766800	G	A	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:240,227:0.49:467
chr7	4804104	rs113397751	G	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr7	4804129	rs78882806	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	4823209	rs78580507	G	T	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.307;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:102,92:0.47:194
chr7	4823971	rs17135121	C	T	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:191,199:0.51:390
chr7	4829757	rs3031279	C	CCT	5938.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.421;QD=19.28;ReadPosRankSum=1.022;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:153,155:0.50:308
chr7	4839163	rs3736241	A	C	6402.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:394,337:0.46:731
chr7	4841313	rs6966329	A	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr7	4841470	rs414035	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	4841655	rs58207166	T	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,51:0.54:94
chr7	4841698	rs35507874	GC	G	1413.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr7	4843171	rs138344435	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	4843213	.	C	CCTGCCAGGG	1268.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr7	4845312	rs2306919	T	G	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:131,148:0.53:279
chr7	4856076	rs115616029	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr7	4862259	rs3816852	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	4900095	rs1553960	A	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	4901191	rs3750010	T	C	4171.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:200,209:0.51:409
chr7	4901328	rs77934742	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr7	4901385	rs3750009	A	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	4901407	rs116405083	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	4901465	rs3833677	G	GCACGTCCCCCACCACCGCGACCTT	384.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	4946973	rs10951715	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	4949237	.	A	AT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.660;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr7	4949290	rs113436347	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	4955621	rs76935527	C	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:101,117:0.54:218
chr7	4955717	rs143120789	C	T	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-1.096;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:115,81:0.41:196
chr7	4960051	rs57083415	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr7	5015884	rs6978131	G	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr7	5021902	rs4036449	T	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.87;MQRankSum=-2.887;QD=7.06;ReadPosRankSum=0.275;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	5023420	rs6965043	A	G	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=52.36;MQRankSum=3.939;QD=11.88;ReadPosRankSum=-0.061;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr7	5023453	.	TTTG	T	1369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-7.745;QD=15.22;ReadPosRankSum=0.460;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr7	5026170	rs57714855	TA	T	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.36;QD=28.44;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	5071220	rs111412022	C	T	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:95,117:0.55:212
chr7	5071458	rs73330997	C	T	5578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.555;QD=10.09;ReadPosRankSum=1.499;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:271,282:0.51:553
chr7	5071621	rs10272746	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	5085841	rs73332924	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	5085948	.	G	A	378.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	5097216	rs111316275	C	T	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=1.459;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:118,115:0.49:233
chr7	5103773	rs35352738	G	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:75,107:0.59:182
chr7	5105133	rs12334144	C	T	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	5112108	rs6862	G	T	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:292,189:0.39:481
chr7	5112530	rs3801055	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	5112554	rs1130329	A	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	5161409	.	C	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=41.38;MQRankSum=-0.887;QD=14.60;ReadPosRankSum=0.090;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	5161512	rs117992329	G	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	5161858	rs11289360	GA	G	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=0.319;QD=12.71;ReadPosRankSum=2.267;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:12,55:0.82:67
chr7	5167160	rs9655048	C	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr7	5172011	rs73057804	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr7	5172045	rs200698976	T	TG	387.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr7	5172052	rs113343750	G	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:54,15:0.22:69
chr7	5172088	rs80233906	A	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-7.913;QD=8.14;ReadPosRankSum=-0.216;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr7	5172095	.	CTT	C	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-7.472;QD=9.82;ReadPosRankSum=0.556;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr7	5172099	.	T	TTG	685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=7.050;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-7.399;QD=9.66;ReadPosRankSum=0.224;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr7	5172102	rs77898154	A	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-6.914;QD=9.87;ReadPosRankSum=0.212;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr7	5172115	rs73057805	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr7	5172176	rs67170096	T	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr7	5172208	rs74491186	C	T	2070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.811;QD=14.28;ReadPosRankSum=2.211;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:88,57:0.39:145
chr7	5172213	rs72125963	TCTCCCA	T	2052.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.611;QD=13.68;ReadPosRankSum=2.625;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:94,56:0.37:150
chr7	5172223	rs77639783	G	A	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.411;QD=14.91;ReadPosRankSum=0.857;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:83,58:0.41:141
chr7	5172282	rs73057807	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr7	5172295	rs73057808	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr7	5172316	rs66755282	T	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr7	5254173	rs4449703	G	A	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:118,138:0.54:256
chr7	5254227	rs4587243	C	G	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	5257490	rs7791896	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr7	5267913	.	G	A	317.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	5269211	rs75141902	C	G	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:161,167:0.51:328
chr7	5269284	rs144937239	C	A	5731.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:359,300:0.46:659
chr7	5269424	rs7785898	A	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr7	5270673	rs79306089	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr7	5331307	rs12667188	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	5334469	rs4724524	G	T	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr7	5334472	rs10623123	C	CCT	2230.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:161,83:0.34:244
chr7	5336855	rs137903684	TCCCTTCTCTGTC	T	1609.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr7	5336885	rs13244318	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr7	5338714	rs6950111	T	C	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-2.173;QD=8.57;ReadPosRankSum=-0.310;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:65,56:0.46:121
chr7	5338770	rs6946155	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr7	5342388	rs3892745	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr7	5342413	rs11979775	T	C	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr7	5347295	rs7794563	A	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	5348012	rs192047644	A	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr7	5353061	rs188607046	C	T	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr7	5372406	rs13238738	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr7	5391702	rs3801048	C	G	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:3,325:0.99:328
chr7	5396715	rs35508364	T	C	8139.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:374,396:0.51:770
chr7	5396955	rs7805732	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr7	5410904	rs61332709	C	G	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:96,109:0.53:205
chr7	5410916	rs10215902	G	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:97,113:0.54:210
chr7	5417421	rs7796767	A	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	5427517	rs34693947	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:135,131:0.49:266
chr7	5427652	rs4720623	G	A	4999.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:292,255:0.47:547
chr7	5427720	rs4724663	A	G	8095.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr7	5430283	rs67295626	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr7	5434135	rs4724668	A	G	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	5459984	rs75583325	T	C	10551.77	.	AC=1;AF=0.500;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	0/1:424,523:0.55:947
chr7	5460452	rs113626522	G	C	4857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.398;QD=10.02;ReadPosRankSum=1.303;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:239,246:0.51:485
chr7	5460518	rs139552678	C	CGCCGGGGCCGCCGGACTG	3321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=19.529;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.005;QD=16.28;ReadPosRankSum=0.764;SOR=1.745;set=HC	GT:AD:AF:DP	0/1:123,81:0.40:204
chr7	5467858	rs73333875	A	G	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:211,195:0.48:406
chr7	5487458	rs4236392	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	5521468	rs10951956	G	A	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:379,282:0.43:661
chr7	5528991	rs11769725	C	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	5529922	rs4077245	A	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr7	5530782	rs10951957	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:146,131:0.47:277
chr7	5530954	rs11975313	G	A	13022.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=0.080;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:2,504:1.00:506
chr7	5535443	rs74597552	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:115,104:0.47:219
chr7	5535646	rs185655521	T	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:210,195:0.48:405
chr7	5540193	rs75092263	G	A	9907.77	.	AC=1;AF=0.500;AN=2;DB;DP=933;set=Intersection	GT:AD:AF:DP	0/1:431,494:0.53:925
chr7	5540769	rs6953642	A	C	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	5541009	rs12667381	C	A	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:280,241:0.46:521
chr7	5541657	rs4724704	G	A	6681.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	5567528	rs182943508	G	A	6393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.357;QD=10.26;ReadPosRankSum=-1.139;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:299,324:0.52:623
chr7	5567842	rs191425263	T	G	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:217,210:0.49:427
chr7	5568366	rs852423	A	G	10214.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr7	5643278	rs11974907	C	T	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	5751332	rs10242141	T	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.436;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	5760971	rs4720636	A	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	5769255	rs58571278	G	A	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:164,166:0.50:330
chr7	5770273	rs139787600	TAAC	T	2152.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr7	5770330	rs35732993	T	C	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=1.496;QD=8.70;ReadPosRankSum=-0.409;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:75,66:0.47:141
chr7	5770400	rs111942365	G	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=47.92;MQRankSum=-1.639;QD=7.66;ReadPosRankSum=1.233;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr7	5770454	rs139784853	G	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=48.56;MQRankSum=-1.748;QD=8.59;ReadPosRankSum=-0.202;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr7	5778796	rs11981617	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr7	5800161	rs28519438	A	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=12.407;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.199;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	5800769	rs3857756	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr7	5920394	rs201796201	T	TA	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr7	5920406	rs10235465	T	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=0.139;QD=17.02;ReadPosRankSum=0.569;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:9,41:0.82:50
chr7	5923682	rs7798766	G	C	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-0.148;QD=10.28;ReadPosRankSum=-0.742;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr7	5923738	rs3890913	A	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	5938326	rs117593220	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	5942461	rs142822906	A	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-4.353;QD=5.32;ReadPosRankSum=-0.351;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr7	5949830	rs11771500	C	T	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	5959433	rs116538166	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.998;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.286;MLEAC=1;MLEAF=0.500;MQ=47.15;MQRankSum=-5.257;QD=8.62;ReadPosRankSum=-0.087;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr7	5965258	rs201118476	T	C	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.24;MQRankSum=-4.043;QD=7.41;ReadPosRankSum=1.151;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:103,74:0.42:177
chr7	5983012	rs150999559	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.44;QD=29.66;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	5983063	rs148485394	C	T	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=43.77;MQRankSum=-1.814;QD=10.56;ReadPosRankSum=-0.723;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:39,44:0.53:83
chr7	5983195	rs138475267	C	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.06;QD=28.44;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	5983553	rs80120223	A	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=28.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	6013049	rs1802683	C	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.19;MQRankSum=-0.000;QD=10.10;ReadPosRankSum=0.887;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	6026775	rs2228006	T	C	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	6026988	rs1805321	G	A	11392.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr7	6031804	.	G	GT	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.339;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr7	6036980	rs1805319	G	C	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-0.168;QD=8.48;ReadPosRankSum=1.594;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:150,128:0.46:278
chr7	6037057	.	GAA	G,GA	1840.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=2.903;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.49;MQRankSum=1.397;QD=10.76;ReadPosRankSum=-2.475;SOR=0.909;set=HC	GT:AD:AF:DP	1/2:28,52,91:0.30,0.53:171
chr7	6038722	rs62456182	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr7	6057598	rs34525431	C	A	5350.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:312,286:0.48:598
chr7	6057777	rs371698854	CTT	C	1095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.982;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:84,68:0.45:152
chr7	6064470	.	C	CT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=6.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.145;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr7	6065914	rs10253000	T	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:73,75:0.51:148
chr7	6066057	rs34019419	G	GC	8342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.285;QD=14.53;ReadPosRankSum=3.215;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:324,250:0.44:574
chr7	6066461	rs2639	T	C	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:218,195:0.47:413
chr7	6070856	rs10255418	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	6071277	rs4724770	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr7	6078376	rs2302331	A	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:156,84:0.35:240
chr7	6078468	rs2302330	C	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr7	6080853	rs34743814	GA	G	717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.858;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:43,56:0.57:99
chr7	6084310	rs511969	G	T	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:134,121:0.47:255
chr7	6088339	rs523254	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	6088349	rs523276	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	6088533	rs525090	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	6089856	rs149665123	AT	A	31.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	6097868	rs559842	A	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.184;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	6178931	rs6973832	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr7	6180680	rs10216107	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	6183682	rs10255598	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	6185194	rs10225119	A	G	3914.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:251,202:0.45:453
chr7	6185356	rs6944071	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr7	6189717	rs61753118	G	A	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:315,216:0.41:531
chr7	6189750	rs61750868	C	T	5550.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:363,282:0.44:645
chr7	6189780	rs3764814	T	C	7008.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:399,360:0.47:759
chr7	6193464	rs61732616	T	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr7	6193521	rs61729726	G	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	6193752	rs61753119	G	A	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:265,290:0.52:555
chr7	6194274	rs6463529	T	C	5880.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:288,304:0.51:592
chr7	6194876	rs6964819	G	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr7	6196522	rs374151941	G	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:116,107:0.48:223
chr7	6197045	rs10255918	T	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr7	6199256	rs59486546	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.34;ReadPosRankSum=-1.248;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	6199265	rs10246266	C	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.65;ReadPosRankSum=-1.248;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	6204999	rs2301910	A	C	10879.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr7	6213396	rs17136059	A	G	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	6226852	rs141523883	C	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr7	6230269	rs12669486	T	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr7	6312039	rs28439928	T	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.067;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.104;QD=7.82;ReadPosRankSum=0.783;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:80,64:0.44:144
chr7	6370144	rs1043965	G	A	13025.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr7	6370194	rs6952125	C	T	18969.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,735:1.00:735
chr7	6370305	rs3750039	C	G	14939.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr7	6370406	rs3750040	C	T	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	6370575	rs3750041	C	T	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:207,184:0.47:391
chr7	6426941	rs702483	C	T	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	6431690	rs836478	C	T	24804.77	.	AC=2;AF=1.00;AN=2;DB;DP=974;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.73;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,964:1.00:964
chr7	6441799	rs836551	G	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	6450051	rs67893418	CCT	C	5998.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:185,160:0.46:345
chr7	6450128	rs836561	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr7	6452793	rs836496	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	6456669	rs836508	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	6461348	rs836514	G	A	5102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.859;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:251,255:0.50:506
chr7	6461424	rs836515	C	T	6737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.657;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:344,341:0.50:685
chr7	6465598	rs836524	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr7	6472354	rs836532	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	6475923	rs57671027	C	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr7	6487293	rs3750037	G	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	6505901	rs2230263	T	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	6537821	rs6463568	G	C	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:176,185:0.51:361
chr7	6541347	rs7791451	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr7	6544691	rs2881698	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr7	6545335	rs9640023	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr7	6560531	rs10247242	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr7	6561773	rs116931289	G	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr7	6566322	rs2881723	T	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	6570618	rs11772639	G	C	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:87,148:0.63:235
chr7	6570829	rs145928003	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	6579684	rs78901064	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=7.25;ReadPosRankSum=1.289;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	6590670	rs9690195	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr7	6590693	rs6463571	G	A	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	6590743	rs148001919	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr7	6591041	rs4724818	C	G	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:177,106:0.37:283
chr7	6591115	rs73674133	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr7	6621128	rs115208608	A	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,86:0.42:204
chr7	6621277	rs11559146	G	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	6624660	rs79501138	G	C	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:181,176:0.49:357
chr7	6628242	rs3088114	T	C	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	6628399	rs151329744	G	T	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:237,235:0.50:472
chr7	6630112	rs187015089	G	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:117,95:0.45:212
chr7	6631414	rs10260097	G	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr7	6647738	rs4416743	T	C	11816.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.63;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,461:1.00:461
chr7	6655932	rs34060186	C	G	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	6656830	rs2243563	G	A	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	6656897	rs1806552	A	G	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	6713936	rs7798061	C	T	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:131,79:0.38:210
chr7	6713940	rs58381208	CAG	C	2850.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:133,80:0.38:213
chr7	6713985	rs2243620	A	G	9375.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	6714028	rs62439695	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:242,178:0.42:420
chr7	6714423	rs10607178	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.772;QD=4.30;ReadPosRankSum=1.023;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	6714961	.	CTT	C	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-1.141;QD=9.74;ReadPosRankSum=-1.163;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	6715127	rs7357087	C	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	6737641	.	C	CA	1850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=17.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.188;SOR=1.448;set=HC	GT:AD:AF:DP	0/1:170,110:0.39:280
chr7	6744957	rs7798471	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	6776650	rs7784521	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=6.526;MLEAC=1;MLEAF=0.500;MQ=43.74;MQRankSum=-1.334;QD=5.55;ReadPosRankSum=-0.626;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr7	6776956	rs7804542	A	G	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:225,191:0.46:416
chr7	6777043	rs7786232	C	T	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:161,107:0.40:268
chr7	6777369	rs35291651	T	C	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:89,121:0.58:210
chr7	6785964	.	T	TA	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-0.524;QD=7.55;ReadPosRankSum=-1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr7	6785965	.	G	A	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-0.524;QD=9.35;ReadPosRankSum=-1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr7	6785972	.	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-0.524;QD=9.35;ReadPosRankSum=-1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr7	6797510	rs150264312	G	A	3958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=1339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.76;MQRankSum=-7.463;QD=2.96;ReadPosRankSum=1.219;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1025,314:0.23:1339
chr7	6798600	rs199717429	A	T	354.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.67;MQRankSum=0.690;QD=20.88;ReadPosRankSum=0.000;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr7	6844574	rs75680229	C	G	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.251;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=47.65;MQRankSum=-7.960;QD=4.23;ReadPosRankSum=-1.180;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:369,154:0.29:523
chr7	6854272	rs11769113	A	T	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	6854512	rs58851147	G	A	4841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=52.88;MQRankSum=-4.588;QD=4.92;ReadPosRankSum=1.229;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:679,305:0.31:984
chr7	6862789	rs6970263	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.275;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-1.664;QD=3.52;ReadPosRankSum=2.215;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	7106443	rs6977620	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=-1.803;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	7106600	rs6943868	T	A	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	7106636	rs6977967	A	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	7135870	rs6976810	T	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr7	7136031	rs56009007	T	C	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:143,140:0.49:283
chr7	7136061	rs35367486	G	GA	7020.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:7,240:0.97:247
chr7	7136077	rs17163287	C	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:144,106:0.42:250
chr7	7136119	rs56097462	A	G	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:127,92:0.42:219
chr7	7273847	rs11976941	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr7	7277807	rs3807862	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	7400240	rs373421582	G	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.355;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	7412829	rs116046691	G	T	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:265,266:0.50:531
chr7	7421019	rs1294626	C	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr7	7480376	rs33937466	C	CA	3927.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:185,160:0.46:345
chr7	7483083	rs10234554	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr7	7491873	rs4720735	AG	CT	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	7495735	rs55745506	T	C	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:97,107:0.52:204
chr7	7514235	rs6952195	C	G	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:249,170:0.41:419
chr7	7514331	rs6965546	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:136,89:0.40:225
chr7	7516958	rs10226811	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr7	7528951	rs6463696	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	7545837	rs60445508	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr7	7557297	rs1016028	T	C	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr7	7557618	rs67184564	CA	C	83.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.586;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	7570959	rs17168516	T	G	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr7	7571094	rs7804532	G	C	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:142,146:0.51:288
chr7	7622696	rs4720741	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	7628275	rs7801367	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr7	7645535	rs10276434	A	G	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	7646651	rs7806046	G	T	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	7646687	rs4222	A	G	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr7	7712941	rs10543428	TAGCAGC	T	3710.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:113,111:0.50:224
chr7	7841524	rs6463722	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr7	7841561	rs2348558	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	8043504	rs38013	A	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr7	8062301	rs115670281	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr7	8110475	rs10253861	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr7	8110773	rs78744806	A	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr7	8110780	rs10486207	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr7	8125964	rs929509	C	T	17160.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr7	8126194	rs12847	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	8132252	rs4725069	T	C	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr7	8181555	rs80350640	C	CCA	11375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;ClippingRankSum=0.000;DB;DP=1300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.821;QD=9.17;ReadPosRankSum=2.316;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:650,590:0.48:1240
chr7	8196529	rs10282493	A	T	4955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=2.181;QD=10.50;ReadPosRankSum=-0.424;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:224,248:0.53:472
chr7	8196567	rs200840693	AAAAAAAAAAAAAAAAAAG	A	1864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=6.714;MLEAC=1;MLEAF=0.500;MQ=62.36;MQRankSum=1.197;QD=10.03;ReadPosRankSum=3.877;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:64,122:0.66:186
chr7	8196591	rs113062448	A	C	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=7.514;MLEAC=1;MLEAF=0.500;MQ=62.23;MQRankSum=-1.209;QD=7.06;ReadPosRankSum=-0.275;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:130,95:0.42:225
chr7	8198226	rs7798010	A	C	3589.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:198,183:0.48:381
chr7	8267649	rs3823817	T	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr7	8267654	rs3840618	T	TA	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.246;QD=14.87;ReadPosRankSum=0.520;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	8267742	rs77059124	A	G	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr7	8267875	rs2080171	C	G	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.161;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	8267924	rs5882159	AT	A	1095.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr7	8268155	rs1861032	T	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=2.372;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:65,36:0.36:101
chr7	8475147	rs6949787	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	8475410	rs79827866	A	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr7	8790525	rs142824259	T	TA	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	8790549	rs10225984	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr7	9765741	.	G	T	114	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=4;MGOF=15;MMLQ=24;MQ=50.75;NF=3;NR=1;PP=114;QD=37.1928031368;SC=GGCGCCGGGCGCACTGCGCGG;SbPval=0.68;Source=Platypus;TC=8;TCF=6;TCR=2;TR=4;WE=9765762;WS=9765731;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	9765754	.	A	G	114	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=4;HapScore=4;MGOF=15;MMLQ=24;MQ=48.26;NF=2;NR=1;PP=114;QD=49.5904041824;SC=CTGCGCGGGGACTGCGAACAA;SbPval=0.63;Source=Platypus;TC=7;TCF=5;TCR=2;TR=3;WE=9765762;WS=9765731;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	9765840	.	C	G	632.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr7	9765893	rs145236238	G	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr7	9765936	rs147155526	T	G	2774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-2.469;QD=9.50;ReadPosRankSum=-0.370;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:144,148:0.51:292
chr7	10973362	rs7789764	C	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	10977630	rs17163788	G	A	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.027;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:93,64:0.41:157
chr7	11022230	rs218966	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=27.04;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	11022564	rs218965	G	A	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	11030274	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.644;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr7	11030522	rs79094851	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,84:0.49:173
chr7	11075263	rs2353340	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	11076352	.	A	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.431;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr7	11415439	rs56264449	A	G	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:264,266:0.50:530
chr7	11416378	rs2189351	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr7	11418670	rs2189352	C	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	11418931	rs12670599	T	C	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:148,147:0.50:295
chr7	11418984	rs7781674	G	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr7	11419104	rs2285757	G	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	11419378	rs2107162	T	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,76:0.54:142
chr7	11441700	rs1859225	G	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	11446769	rs10260759	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr7	11446902	rs6956916	T	G	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr7	11447159	rs6975407	G	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr7	11464297	rs1859226	T	C	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:160,137:0.46:297
chr7	11466172	rs73675999	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	11485527	rs10262052	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	11487100	rs2074434	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr7	11581003	rs2072139	G	A	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:173,177:0.51:350
chr7	11581121	rs47	T	C	18621.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr7	11581134	rs2074603	T	C	4891.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:265,252:0.49:517
chr7	11630298	rs2074602	C	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:155,169:0.52:324
chr7	11675662	rs2074600	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	11676377	rs2074598	G	A	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:336,278:0.45:614
chr7	11676694	rs2074597	C	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr7	12255434	rs6460901	C	T	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.712;QD=5.48;ReadPosRankSum=0.820;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:81,43:0.35:124
chr7	12255511	rs6460902	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	12257938	rs6415232	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	12257966	rs3887296	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	12263799	rs11509137	TG	CA	5250.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;JOINED;set=Intersection	GT:AD:AF:DP	0/1:130,135:0.51:265
chr7	12269260	rs3839691	A	ATGTT	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr7	12269417	rs3173615	C	G	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.465;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:46,44:0.49:90
chr7	12270625	rs2302635	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.213;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr7	12270770	rs2302634	T	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.530;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr7	12270815	rs2302633	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr7	12270819	rs73677559	A	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr7	12270900	rs16877361	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	12271452	rs3800842	A	G	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	12370702	rs3217131	AT	A	74.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	12370794	rs1059002	T	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	12370952	rs6954265	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	12371001	rs6954555	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	12371019	rs3815534	A	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	12372999	rs6460928	T	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	12373082	rs6460929	C	T	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	12373353	rs6460930	TG	CA	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	12375667	rs35608044	G	GA,GT	1083.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/2:0.42,0.58:38
chr7	12376811	rs2192828	A	C	16168.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:1,628:1.00:629
chr7	12382637	rs1440030	C	T	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	12383967	rs1440032	T	A	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	12391319	rs6967385	G	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	12393966	rs6944618	A	G	13920.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.40;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr7	12393974	rs6944626	A	C	15314.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr7	12394053	rs6945167	G	T	15755.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr7	12394202	rs10267441	A	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	12395813	rs2119141	T	C	3222.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=12.320;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.02;ReadPosRankSum=-1.092;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:3,137:0.98:140
chr7	12396040	rs4719307	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	12396905	rs79233092	T	C	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:189,159:0.46:348
chr7	12400837	rs2053380	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr7	12406989	rs6460939	C	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=2.009;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:45,34:0.43:79
chr7	12409456	rs75583079	A	G	6118.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:365,316:0.46:681
chr7	12410112	rs963323	G	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr7	12417407	rs7793993	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	12418964	rs10270931	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr7	12419039	rs10570724	TCA	T	4297.73	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:206,118:0.36:324
chr7	12420092	rs1025787	G	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr7	12420447	rs6959370	T	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr7	12420517	rs6460941	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-2.189;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	12423390	rs138038861	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	12428550	rs848019	G	A	2671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.096;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:197,146:0.43:343
chr7	12428582	rs848018	C	T	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.367;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:138,103:0.43:241
chr7	12428614	rs113732443	T	C	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr7	12428741	rs848017	G	A	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-1.105;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:95,136:0.59:231
chr7	12428803	rs848016	G	A	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	12429112	rs848015	T	C	65.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	12433164	rs10232837	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	12433210	rs10233068	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	12433330	rs73302462	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.322;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:42,30:0.42:72
chr7	12433347	rs17165995	C	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.46;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	12443128	rs7796334	A	G	4799.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:293,252:0.46:545
chr7	12443390	rs17166017	G	A	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:148,169:0.53:317
chr7	12609988	rs2240571	G	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	12610594	rs2240572	A	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr7	12611252	rs6460967	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	12620671	rs77923354	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr7	12620790	rs116532633	C	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr7	12635963	rs79299379	T	G	5104.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:260,261:0.50:521
chr7	12636026	rs758111	T	C	10591.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr7	12644334	rs849778	G	T	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:179,149:0.45:328
chr7	12644348	rs78612532	G	GGT	3419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.591;QD=12.26;ReadPosRankSum=1.499;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:160,119:0.43:279
chr7	12675713	rs17166250	T	C	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:206,228:0.53:434
chr7	12680232	rs79161335	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	12684340	rs2691810	C	T	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	12691703	rs3736574	G	C	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr7	12692497	rs145416620	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.565;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	12727826	rs2280633	G	C	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	13971117	rs73274895	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr7	13971423	rs17167666	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:103,68:0.40:171
chr7	13971447	rs17167668	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr7	13975356	rs377435169	A	G	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:120,100:0.45:220
chr7	13978809	rs9639168	T	C	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:268,207:0.44:475
chr7	14016939	rs2074670	T	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr7	14017007	rs2066977	CC	TG	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.913;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=2.016;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:62,24:0.28:86
chr7	14017126	rs5882424	T	TA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.999;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	14025640	rs3801110	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	14025727	rs3823704	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:89,79:0.47:168
chr7	14025766	rs10215655	T	A	3027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.593;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:169,152:0.47:321
chr7	14026357	rs3213661	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	14027867	rs59844225	G	GCA	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr7	14028189	rs11364123	CA	C	842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.193;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:43,61:0.59:104
chr7	14028220	rs72368501	GA	G,GAA	902.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.652;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.82;MQRankSum=0.000;QD=11.88;ReadPosRankSum=1.160;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:8,34,34:0.45,0.45:76
chr7	14028245	rs11460974	G	GA	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.548;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:34,62:0.65:96
chr7	14028707	rs140879246	TA	T	3651.73	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:138,134:0.49:272
chr7	14028794	rs10622991	T	TAA	1277.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr7	14028860	rs11328804	CA	C	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	14216442	rs17167945	A	G	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	14217673	rs6966154	G	A	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	14384832	rs2271267	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	14517650	rs3839747	T	TAC	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.316;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr7	14517926	rs139928039	A	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr7	14517977	rs3823843	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=1.550;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	14622510	rs17595234	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr7	14622870	rs3795245	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr7	14646986	rs17168299	C	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.460;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	14653054	rs1525088	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.082;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr7	14712793	rs34768816	AG	A	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr7	14737622	rs145306944	AAAAG	A	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.333;QD=19.55;ReadPosRankSum=1.338;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	14758273	rs1997040	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr7	14775716	rs185606723	A	C	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:112,113:0.50:225
chr7	14775821	rs139628753	TG	T	1501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.542;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	14775824	rs80024169	A	C	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.141;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	14789844	rs1723239	A	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr7	14793399	rs1723225	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	14793478	rs1723224	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.380;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr7	14793724	rs4632953	G	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr7	14797180	rs147706722	T	TAC	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	14881079	rs68031412	CAAA	C,CAA	165.79	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=10;set=Intersection	GT:AF:DP	0/1:0.67:9
chr7	15346196	rs5882493	T	TA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.601;QD=6.58;ReadPosRankSum=-1.272;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr7	15405081	rs73300344	T	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:106,92:0.46:198
chr7	15458033	rs4469360	C	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	15470543	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=2.250;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	15652068	rs2237493	T	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:68,66:0.49:134
chr7	15666230	rs3779406	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.38;ReadPosRankSum=0.241;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	15725797	rs113582077	ATGG	A	17148.73	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:7,540:0.99:547
chr7	15726066	rs1050290	G	A	21056.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:1,807:1.00:808
chr7	15726129	rs11975534	A	C	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr7	16129171	rs28569130	T	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.953;QD=10.28;ReadPosRankSum=-0.746;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr7	16129171	.	TA	GG	190	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=27;MQ=60.19;NF=10;NR=6;PP=190;QD=15.2167421789;SC=CATATATATGTATATACATGT;SbPval=0.51;Source=Platypus;TC=29;TCF=19;TCR=10;TR=16;WE=16129180;WS=16129161;set=Platypus	GT:AD:AF:DP	1/0:13,16:0.55:29
chr7	16129172	rs9691136	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=34.44;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	16131239	rs139003391	C	CCA	1490.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr7	16131260	rs1528137	C	T	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	16255602	rs4389828	A	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	16298434	rs1295153	T	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	16298766	rs5882563	A	AT	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	16317667	rs3801431	T	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	16348031	rs80100789	A	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	16348211	rs61746966	T	C	15046.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:2,587:1.00:589
chr7	16445673	rs6461252	A	T	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	16460893	rs7782939	T	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr7	16505341	rs6945425	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr7	16566391	rs6461263	T	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr7	16597114	rs6951596	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	16598655	rs6979816	G	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	16605861	rs11463350	A	AT	324.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	16607177	.	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=-1.150;QD=0.74;ReadPosRankSum=0.836;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr7	16620928	rs562687	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chr7	16640358	rs543387	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	16650427	rs572570	C	G	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	16664732	rs113106648	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:142,124:0.47:266
chr7	16676164	rs76641055	G	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	16684247	rs3807505	G	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	16685063	rs2691547	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr7	16713933	rs11465103	A	AT	260.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	16722353	rs818503	A	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	16722370	rs818502	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.975;QD=10.14;ReadPosRankSum=-0.614;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr7	16722392	rs34052310	G	GT	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.171;QD=10.15;ReadPosRankSum=0.477;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	16725501	.	CTTT	C	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.994;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr7	16729252	rs6950993	G	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr7	16734642	rs6953930	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr7	16736479	rs7796792	C	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,80:0.52:155
chr7	16745589	rs1149510	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	16745716	rs7780235	G	T	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.282;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:118,120:0.50:238
chr7	16793504	rs6975847	A	G	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	16793677	rs79436477	C	T	4771.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:367,256:0.41:623
chr7	16793779	rs11405941	G	GC	6320.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	16815786	rs2290836	C	G	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr7	16816000	rs2290837	T	C	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	16818799	rs6461276	A	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr7	16822936	rs141390448	TG	T	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr7	16823095	rs11491	G	A	17063.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=-1.625;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,676:1.00:678
chr7	16834444	rs2272246	C	T	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	16834551	rs4719480	C	A	13624.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:2,535:1.00:537
chr7	16834597	rs6842	A	G	6264.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:301,311:0.51:612
chr7	16837404	rs819010	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	16872913	rs4719482	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr7	16899197	rs11798	C	T	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.566;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:56,49:0.47:105
chr7	16900080	rs113772375	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr7	16901185	rs4236289	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	16901542	.	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.545;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	16901708	rs10242737	A	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:64,68:0.52:132
chr7	16913394	rs10249749	A	G	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	16913457	rs55900499	A	G	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:136,139:0.51:275
chr7	16913520	rs4472406	G	A	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	16913617	rs4389824	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	17339078	rs12112861	C	A	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:149,121:0.45:270
chr7	17370289	rs17137583	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	17843292	.	C	A	68.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	17854532	rs2723501	G	T	8420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.241;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,338:1.00:339
chr7	17854575	rs34649849	G	GAA	2624.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=1.593;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:7,116:0.94:123
chr7	17854616	rs2723502	T	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	17874271	rs4721660	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	17874300	rs4721661	G	A	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	17890413	rs3839705	CA	C	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	17908130	rs2389858	T	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr7	17913083	rs5882635	A	AC	2479.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	17962382	rs11397631	G	GA	2884.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.65;ReadPosRankSum=0.989;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr7	17979793	rs3800963	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr7	18066569	rs3800962	C	A	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:189,208:0.52:397
chr7	18067479	rs35708479	ACT	A	3499.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chr7	18202067	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.916;QD=0.65;ReadPosRankSum=0.032;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr7	18624800	rs2073974	T	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	18629915	rs73313283	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr7	18630208	rs1726610	A	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	18631098	.	A	ATGTGTG	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.746;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	18631186	rs34096894	C	T	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:150,150:0.50:300
chr7	18668945	rs67361882	AT	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=2.237;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr7	18674435	rs2285431	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=1.407;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr7	18688033	.	ATG	A	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.433;QD=2.48;ReadPosRankSum=1.743;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:114,26:0.19:140
chr7	18767343	rs1178127	A	G	7498.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:406,397:0.49:803
chr7	18788589	rs1178164	T	C	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:116,124:0.52:240
chr7	18806822	rs56084250	C	CA	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr7	18868745	rs13227668	A	G	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:167,174:0.51:341
chr7	18868905	rs115552810	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr7	18914251	rs2286213	C	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr7	18993870	rs2389998	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	19015338	rs56268228	A	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr7	19184746	rs34966908	C	CTCT	15971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.124;QD=19.29;ReadPosRankSum=3.390;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:412,416:0.50:828
chr7	19748611	rs373324285	C	T	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:155,139:0.47:294
chr7	19812229	.	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.910;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.431;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr7	19812994	.	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,55:0.54:102
chr7	19813018	rs12673970	T	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	19813202	rs117555925	C	T	4541.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:222,226:0.50:448
chr7	19813338	rs117803408	C	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr7	20180425	rs10555255	TAC	T	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.300;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	20180507	rs55989776	G	GAC	791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.897;QD=8.00;ReadPosRankSum=1.038;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr7	20180717	rs3735615	C	G	3041.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:132,154:0.54:286
chr7	20180760	rs112281884	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:84,106:0.56:190
chr7	20198440	rs975263	G	A	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:273,231:0.46:504
chr7	20371395	rs206197	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	20371561	.	G	GTTGTT	2980.73	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr7	20403353	rs35420999	AT	A	2190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.430;QD=6.35;ReadPosRankSum=-0.875;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:185,160:0.46:345
chr7	20430900	rs10227623	C	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	20430960	rs3779506	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr7	20438743	rs6945675	C	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	20444533	rs73088494	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr7	20449449	rs141025562	T	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr7	20662855	rs57228312	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	20682884	rs17143212	C	T	7025.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:420,363:0.46:783
chr7	20685508	rs11983326	T	G	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr7	20685702	rs199969625	T	A	4532.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:237,232:0.49:469
chr7	20689935	rs13244876	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-1.834;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	20689935	.	CCT	ACA	145	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=145;QD=49.6169687156;SC=TTATTTAGAGCCTACTATGTG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=20689945;WS=20689925;set=Platypus	GT:AD:AF:DP	1/0:2,4:0.67:6
chr7	20689937	rs11973722	T	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-1.834;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	20689949	rs12674033	G	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.72;ReadPosRankSum=-1.611;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	20691013	rs3213623	C	T	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:187,179:0.49:366
chr7	20698270	rs2301641	A	G	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:194,238:0.55:432
chr7	20698602	rs12700227	T	C	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:127,159:0.56:286
chr7	20706390	rs79482711	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr7	20706645	rs12535128	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	20721084	rs11764760	T	C	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=1.379;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:91,86:0.49:177
chr7	20739336	.	G	GA	159.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	20739632	rs11762180	A	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr7	20739774	rs5882753	AT	A	825.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	20762609	rs73085689	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	20762646	rs62453384	G	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr7	20762937	rs62453385	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr7	20768013	rs10254317	G	A	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	20778646	rs6461515	G	A	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:105,100:0.49:205
chr7	20778773	rs6461516	C	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	20778844	rs11380694	A	AG	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.611;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	20782430	rs146645881	G	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	20782474	rs12669866	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	20784936	rs144219498	C	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr7	20785123	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=-0.076;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	20803107	rs55827389	T	TC	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	20824614	rs34908430	C	T	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:159,131:0.45:290
chr7	20825145	.	GGCAGCCGCGGCTGCTGCCGCGGCCGCC	G	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=4.284;QD=2.11;ReadPosRankSum=1.383;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr7	20826452	rs34863300	T	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:94,82:0.47:176
chr7	21468579	rs39303	G	A	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	21468869	rs141294478	TCC	T	1589.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.498;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.286;QD=22.39;ReadPosRankSum=-0.613;SOR=2.336;set=HC	GT:AD:AF:DP	1/1:3,68:0.96:71
chr7	21469700	rs149672683	A	G	6157.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:333,315:0.49:648
chr7	21470513	rs39304	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr7	21470536	rs40245	A	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	21516627	rs3214203	AT	A	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr7	21582963	rs2285943	GA	TT	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr7	21583282	rs2285945	T	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr7	21583329	rs2285946	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr7	21584820	rs7781669	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr7	21599233	rs10950854	C	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr7	21600902	rs4374884	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr7	21603678	rs5008148	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	21603750	.	G	GA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.296;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr7	21603886	rs4392792	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr7	21611619	rs7804044	G	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	21628237	rs6963535	C	T	12225.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr7	21630908	rs78653098	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:113,74:0.40:187
chr7	21630982	rs4615458	A	G	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:178,211:0.54:389
chr7	21639572	rs17144747	A	G	5660.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:398,305:0.43:703
chr7	21639780	rs116160990	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	21639818	rs6461586	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	21640361	rs10269582	T	C	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	21640405	rs10224537	A	G	11341.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	21640570	rs11981446	T	C	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:167,164:0.50:331
chr7	21641218	rs3827657	G	A	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr7	21646233	.	CT	C	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=7.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.310;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:113,61:0.35:174
chr7	21654602	rs7779983	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr7	21658855	rs57208694	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr7	21695416	rs11769118	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr7	21695631	rs111425487	G	A	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:152,162:0.52:314
chr7	21695649	rs4385378	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:120,122:0.50:242
chr7	21721086	rs76415325	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr7	21727271	rs62445283	C	T	144.96	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr7	21730647	rs7790948	T	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr7	21744039	rs2965401	T	G	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:93,93:0.50:186
chr7	21744260	rs114409690	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr7	21745061	rs1023542	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:180,154:0.46:334
chr7	21757287	rs2965409	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	21757636	rs2074760	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr7	21765452	rs12536928	C	T	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-1.566;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:132,112:0.46:244
chr7	21765636	rs2965424	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	21775153	rs2072219	A	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr7	21775210	rs2270022	A	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr7	21775443	rs2072221	G	A	4340.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:222,221:0.50:443
chr7	21778449	rs1109806	C	T	3339.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:228,180:0.44:408
chr7	21779084	rs2906686	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.41;ReadPosRankSum=-1.876;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr7	21779278	rs9639393	A	G	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:166,126:0.43:292
chr7	21788132	rs115318492	A	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr7	21789442	rs4355679	T	C	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:184,155:0.46:339
chr7	21805230	rs376684798	A	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.000;QD=14.18;ReadPosRankSum=1.687;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	21813318	rs11374411	A	AT	1842.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=23.93;SOR=1.833;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	21826199	rs2072093	G	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr7	21826286	rs72657384	A	G	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,121:0.49:245
chr7	21847457	rs6969900	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr7	21847713	rs72657394	GA	G	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.038;QD=13.58;ReadPosRankSum=0.852;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	21892023	rs55939718	T	TAA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.327;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr7	21892247	rs72657402	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr7	21893993	rs4722064	G	T	12673.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	21901566	rs4722067	T	C	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	21901740	rs35912578	C	CT	244.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.48;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	21907452	rs5882827	G	GT	1468.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr7	21907458	rs4995598	A	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr7	21907672	rs72658815	C	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.133;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr7	21907696	rs11773744	T	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	21924014	rs6461613	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr7	21932317	rs9639401	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr7	21939032	rs56333627	C	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:200,196:0.49:396
chr7	21939089	rs55714084	C	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,92:0.46:201
chr7	21940557	rs10555456	AACTT	A	3751.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.14;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	21940888	rs72658841	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr7	21940960	rs7971	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr7	21941861	rs60370798	ATCTT	A	4211.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	21942120	rs6965583	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr7	21946266	rs115917503	C	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr7	21956405	rs1128250	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:143,114:0.44:257
chr7	21985347	rs1406706	G	A	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	22165421	rs17146285	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr7	22190131	rs11321630	GA	G	672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.042;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:57,69:0.55:126
chr7	22197507	rs7809342	A	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr7	22200255	rs955484	G	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:148,92:0.38:240
chr7	22202117	rs12592	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:106,87:0.45:193
chr7	22202196	rs1981600	T	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr7	22202485	rs1981601	T	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.848;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:121,75:0.38:196
chr7	22206854	rs17709607	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr7	22242370	rs4722110	G	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	22259670	rs1859807	C	A	4320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-1.598;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:265,225:0.46:490
chr7	22306477	rs112288296	T	C	5216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.893;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:191,255:0.57:446
chr7	22330862	rs367948789	TA	T	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.444;QD=2.62;ReadPosRankSum=-1.689;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:91,45:0.33:136
chr7	22347861	rs10499552	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr7	22355166	rs10607345	CTA	C	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.97;ReadPosRankSum=-1.465;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr7	22357716	rs10950897	T	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=0.189;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	22357757	.	G	GA	28	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9998;HP=16;HapScore=2;MGOF=36;MMLQ=25;MQ=60.0;NF=0;NR=2;PP=28;QD=15.5;SC=CCTCTGCTATGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=22357765;WS=22357747;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	22459560	rs17146851	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr7	22459563	rs75256424	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr7	22478207	rs2528843	G	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:104,111:0.52:215
chr7	22478374	rs115424050	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr7	22478446	rs10485989	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr7	22532434	.	G	C	321	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=27;MQ=46.83;NF=1;NR=17;PP=321;QD=19.7650673637;SC=TTCCCTGTGTGTACTATGAAG;SbPval=0.85;Source=Platypus;TC=57;TCF=6;TCR=51;TR=18;WE=22532442;WS=22532424;set=Platypus	GT:AD:AF:DP	1/0:39,18:0.32:57
chr7	22532455	.	A	G	144	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=24;MQ=49.8;NF=0;NR=12;PP=144;QD=14.8976010456;SC=CCCTGATAACAGGTCTCCACA;SbPval=1.0;Source=Platypus;TC=44;TCF=3;TCR=41;TR=12;WE=22532463;WS=22532445;set=Platypus	GT:AD:AF:DP	0/1:32,12:0.27:44
chr7	22533452	rs201338533	C	T	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:141,88:0.38:229
chr7	22768219	rs1524107	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	22768249	rs2066992	G	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr7	22771156	rs2069849	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:154,187:0.55:341
chr7	22857302	rs115012052	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	22857477	rs2286499	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	22857504	rs2286498	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	22857589	rs7782015	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	22861639	rs981792	C	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr7	22861978	rs4354222	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr7	22862131	rs2270108	A	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr7	22862183	rs2270107	G	A	7010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.05;ReadPosRankSum=0.907;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:155,178:0.53:333
chr7	22862192	rs2270106	A	G	7359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=1.118;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:178,199:0.53:377
chr7	22896086	rs58988088	TAAA	T	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr7	22896231	rs1608553	G	C	6277.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	22896340	rs5882865	AC	A	6071.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr7	22896343	rs115918007	C	A	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr7	22896363	rs1608552	G	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	23000783	rs35493358	G	GCTCT	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=1.346;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr7	23015831	rs3735231	T	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-2.001;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:53,33:0.38:86
chr7	23016530	rs2078535	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr7	23145837	rs1005786	G	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr7	23157631	rs73272055	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr7	23163270	rs11982002	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr7	23164526	rs2058275	C	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,61:0.37:163
chr7	23191625	rs2178140	G	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr7	23191636	rs2178139	A	G	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,90:0.49:185
chr7	23191664	rs2141306	G	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:117,114:0.49:231
chr7	23195555	rs141774430	CTTTAT	C	3257.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	23207353	rs149369778	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	23221870	rs7808488	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr7	23227555	rs373870179	GTC	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.579;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr7	23286315	rs858239	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	23293098	rs199348	C	A	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,88:0.46:193
chr7	23293746	rs199347	A	G	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:125,110:0.47:235
chr7	23296533	rs199355	G	A	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:206,167:0.45:373
chr7	23300049	rs199351	A	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr7	23306020	rs156429	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	23307634	rs2307783	ATGGG	A	2056.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr7	23352512	rs199653	C	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	23552392	rs201252500	TA	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.146;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	23552419	rs115138624	G	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.179;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr7	23624570	rs227933	G	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	23724364	rs7791123	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr7	23727944	rs7802834	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.921;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	23730983	rs7782183	T	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	23740501	rs10244532	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr7	23749832	rs3807888	G	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr7	23751736	rs7779633	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	23757011	rs138454658	TTTTAAG	T	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	23757260	rs2058995	T	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	23793882	rs12532929	C	T	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	23794183	rs4722267	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	23810517	rs7785154	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	23810845	rs1469001	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	23826066	rs1862068	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	23830549	rs61741952	G	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr7	23830593	.	C	CAT	40	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=40;QD=25.5;SC=TGAAATAGATCATATATATAT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=2;WE=23830601;WS=23830583;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chr7	23854717	rs2390814	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	23872024	rs56362098	C	CTTTG	390.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	24324759	rs16141	T	G	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:134,93:0.41:227
chr7	24324808	rs16140	C	G	4503.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:204,220:0.52:424
chr7	24325009	rs5573	G	A	4912.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:281,254:0.47:535
chr7	24663820	rs2711127	T	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr7	24690277	rs17149773	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr7	24703298	rs1053962	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr7	24718710	rs722218	A	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	24720073	rs17149856	G	A	5710.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:343,299:0.47:642
chr7	24742436	rs17149912	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,55:0.51:108
chr7	24742585	rs2074142	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.79;ReadPosRankSum=-0.253;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	24746022	rs2269812	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	24746892	rs73288041	C	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:78,72:0.48:150
chr7	24747910	rs2721809	G	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	24758645	rs876307	G	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	24758795	rs876305	T	C	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	24784057	rs2721801	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	24784403	rs2521768	C	T	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	24789082	rs2521770	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=24.72;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	24789116	rs66692319	C	CAA	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr7	24839983	rs60693954	T	TC	3228.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:137,165:0.55:302
chr7	24844080	rs57390482	T	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.201;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:50,45:0.47:95
chr7	24854765	rs1044956	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:170,174:0.51:344
chr7	24859962	rs7810587	A	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:95,80:0.46:175
chr7	24860000	rs6979174	G	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	24881958	rs112775983	G	C	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr7	24888620	rs757156	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	24891947	rs6461822	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	24892147	rs139112654	A	G	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:187,165:0.47:352
chr7	24901503	rs11324094	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.84;ReadPosRankSum=0.875;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	24902762	rs2285690	C	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	24903107	rs2285691	C	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	24904868	rs2040689	T	A	8389.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	24904873	rs3735543	G	A	8800.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.348;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	24904889	rs2040690	T	C	7453.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	24911526	rs10261181	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr7	25181912	rs2285738	T	C	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	25182001	rs2285737	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	25182172	rs2285736	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	25191044	rs12532548	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	25194506	rs12538022	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	25194618	rs2523073	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr7	25194665	rs2523072	G	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:105,52:0.33:157
chr7	25194753	rs12535348	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:114,61:0.35:175
chr7	25194857	rs2717899	A	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.917;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr7	25200976	rs13221848	A	G	55.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr7	25207974	rs2717858	T	C	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:206,208:0.50:414
chr7	25218661	rs10642607	A	AAAACAAAC,AAAACAAACAAACAAAC	854.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/2:0.67,0.33:15
chr7	25264556	rs978095	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr7	25264847	rs2717854	T	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.245;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr7	25266400	rs2717851	G	A	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:188,173:0.48:361
chr7	25267934	rs877834	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=1.066;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	25267963	rs886354	G	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	25268094	rs877835	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.343;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	25989520	rs6977848	T	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	26236902	rs116289690	T	C	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:202,197:0.49:399
chr7	26386122	rs3801891	T	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:127,129:0.50:256
chr7	26386154	rs3801890	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:122,113:0.48:235
chr7	26404071	rs2253569	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr7	26576535	rs740182	T	C	4526.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:182,217:0.54:399
chr7	26578105	rs17153822	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:192,161:0.46:353
chr7	26678856	rs57000259	A	G	8989.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=-0.661;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:2,358:0.99:360
chr7	26685934	rs12671270	T	C	12793.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.34;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	26685934	.	TG	CA,CG	1244	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=10;MMLQ=22;MQ=59.95;NF=48,101;NR=36,83;PP=1135,1244;QD=14.1484270817;SC=TCTCCGCATGTGGGACTCTCG;SbPval=0.67;Source=Platypus;TC=186;TCF=101;TCR=85;TR=84,184;WE=26685943;WS=26685924;set=Platypus	GT:AF:DP	0/1:0.45:186
chr7	26685935	rs114775093	G	A	3617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.837;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:179,181:0.50:360
chr7	26724279	rs212850	T	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	26765596	rs1129771	C	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr7	26766656	rs74498041	T	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.130;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr7	26778406	rs10951145	A	G	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:134,112:0.46:246
chr7	26778568	rs73077525	T	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr7	26883761	rs61646374	T	TA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.652;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:159,39:0.20:198
chr7	27134787	rs114515644	T	A	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr7	27135314	rs10951154	C	T	18450.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	1/1:38,763:0.95:801
chr7	27141267	rs706016	C	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	27147451	rs59078276	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.100;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	27169093	rs2158218	T	G	13962.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr7	27169617	rs6943542	T	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	27169934	rs10251056	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	27170145	rs6944345	T	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	27196069	rs2301720	A	C	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	27196113	rs2301721	C	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:159,117:0.42:276
chr7	27203139	rs7810502	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.824;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	27211451	rs73290334	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr7	27238691	rs2071265	C	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	27239298	.	CGCG	C	21	.	AC=1;AF=0.500;AN=2;FR=0.4999;HP=1;HapScore=1;MGOF=20;MMLQ=24;MQ=60.39;NF=0;NR=2;PP=21;QD=16.5;SC=CCGAGGACGACGCGGCGGCGG;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=2;WE=27239308;WS=27239288;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr7	27279191	rs3801321	T	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr7	27566053	rs12700813	G	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.274;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr7	27578167	rs9639553	C	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	27581495	rs6462029	T	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr7	27582783	rs978447	G	A	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr7	27668860	rs6415252	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr7	27671899	rs7779990	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr7	27671901	rs73073128	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr7	27702503	rs76147705	G	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	27788354	rs73078762	C	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr7	27807441	rs7807729	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	27807589	rs7790914	T	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	27807650	rs7808062	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.174;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	27833935	rs115792581	T	G	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:115,105:0.48:220
chr7	27867620	rs150348181	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr7	27885970	rs11760937	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr7	27886011	rs141603370	C	CATATACGTATACGTGTAT	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr7	27886171	rs6462054	A	G	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr7	27953035	rs210	A	G	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:171,171:0.50:342
chr7	28031704	rs73089199	T	C	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr7	28220228	rs10255700	C	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:76,115:0.60:191
chr7	28256845	rs113982739	A	T	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:103,109:0.51:212
chr7	28319234	rs177484	A	C	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr7	28534501	rs3216916	C	CT	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.015;QD=4.41;ReadPosRankSum=0.077;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:66,36:0.35:102
chr7	28662583	rs41289	C	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr7	28673541	rs41305	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	28676906	rs41309	A	T	534.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-1.626;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:2,25:0.93:27
chr7	28758638	rs879593	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	28857606	rs12531253	G	A	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	28858456	rs10951205	A	G	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	28995800	rs61742220	G	A	4235.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:192,210:0.52:402
chr7	28996220	rs1006521	G	A	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:168,126:0.43:294
chr7	28996557	rs3735562	C	T	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:128,127:0.50:255
chr7	28996944	rs740250	T	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	28997141	rs6950750	G	C	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:169,140:0.45:309
chr7	28997497	rs67010340	GC	G	10157.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	28997596	rs5883174	G	GC	2946.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	29070209	rs7313	G	A	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:183,204:0.53:387
chr7	29103867	rs644763	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.10;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	29103867	.	TGGAAAGACAT	CGGAAAGACAC,CGGAAAGACAT	624	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=24;MQ=59.81;NF=14,30;NR=27,51;PP=624,410;QD=16.523606704;SC=GAAGGGGCATTGGAAAGACAT;SbPval=0.65;Source=Platypus;TC=81;TCF=30;TCR=51;TR=41,81;WE=29103885;WS=29103857;set=Platypus	GT:AF:DP	0/1:0.51:81
chr7	29103877	rs2074783	T	C	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.044;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:56,63:0.53:119
chr7	29103944	rs34641639	A	AT	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	29105776	rs2270027	A	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.408;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=2.508;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr7	29105858	rs56168268	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	29111546	rs56680259	A	G	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:302,233:0.44:535
chr7	29111578	rs2074784	A	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:143,194:0.58:337
chr7	29111620	rs317719	A	C	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	29111634	rs2074785	C	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr7	29132212	rs2687636	A	G	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	29186256	rs245880	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	29186576	rs245881	A	G	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	29237465	rs57403047	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr7	29394048	rs757327	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr7	29407455	rs75521454	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr7	29407536	rs78081532	C	T	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:198,118:0.37:316
chr7	29437867	rs7799981	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	29438109	rs12112301	C	T	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:60,82:0.58:142
chr7	29546763	rs11388362	A	AT,ATT	599.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.937;SOR=0.570;set=HC	GT:AD:AF:DP	1/2:9,20,16:0.44,0.36:45
chr7	29552213	rs3750099	T	C	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:191,156:0.45:347
chr7	29552463	rs1420145	C	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	29605935	rs2302617	G	A	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:238,240:0.50:478
chr7	29605975	rs2302618	C	G	19193.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr7	29606288	rs10271996	C	T	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:62,75:0.55:137
chr7	29688827	rs1641209	T	C	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=25.40;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	29688915	rs1728643	G	A	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	29689018	rs1641210	T	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	29720404	rs850108	A	G	1547.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.89;MQRankSum=-0.711;QD=26.23;ReadPosRankSum=1.616;SOR=0.557;set=HC	GT:AD:AF:DP	1/1:1,58:0.98:59
chr7	29720482	rs70980562	A	AG	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.70;QD=34.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	29771546	rs112712037	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.599;QD=0.86;ReadPosRankSum=-1.563;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr7	29771597	rs850084	A	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,88:0.46:190
chr7	29781927	rs850098	T	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:180,170:0.49:350
chr7	29923572	rs28439342	T	C	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:234,218:0.48:452
chr7	29923970	rs174965	A	T	6939.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:325,349:0.52:674
chr7	29924221	rs13310795	T	C	29090.77	.	AC=2;AF=1.00;AN=2;DB;DP=1137;set=Intersection	GT:AD:AF:DP	1/1:1,1117:1.00:1118
chr7	29944062	rs4722959	A	T	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	29954106	.	C	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.621;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:143,39:0.21:182
chr7	29954137	rs1056061	A	G	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.008;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:129,144:0.53:273
chr7	30029714	rs62446663	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr7	30054624	rs57981260	C	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	30062202	rs2302626	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr7	30085766	rs10951259	T	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	30100667	rs143386179	CT	C	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	30101683	rs35889168	C	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:116,76:0.40:192
chr7	30101716	rs17326411	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,57:0.39:148
chr7	30113617	rs35610327	A	AG	569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.361;MLEAC=1;MLEAF=0.500;MQ=61.73;MQRankSum=3.318;QD=6.26;ReadPosRankSum=2.127;SOR=1.490;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr7	30113706	rs11977829	A	G	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:301,225:0.43:526
chr7	30113862	rs149548208	T	TTG,TTGTGTGTGTG	1516.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=127;set=Intersection	GT:AF:DP	1/2:0.29,0.53:75
chr7	30118508	rs1109208	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr7	30157472	rs147327175	C	CAGATT	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	30174773	rs73689406	C	G	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:315,245:0.44:560
chr7	30177095	rs6954451	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.229;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr7	30490730	rs193048431	G	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-0.134;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr7	30536874	rs38405	G	A	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.221;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:97,110:0.53:207
chr7	30538651	rs38409	T	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	30540399	rs38410	G	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	30544360	rs38414	G	A	20067.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,771:1.00:771
chr7	30634661	rs1049402	C	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	30635600	rs10265589	C	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr7	30638292	rs77213416	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	30643069	rs1558064	C	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	30651938	rs1986756	G	A	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	30655542	rs11553502	T	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.247;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:96,98:0.51:194
chr7	30656650	rs78284531	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=0.349;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	30662087	rs75855065	T	C	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:236,171:0.42:407
chr7	30662174	rs17159291	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr7	30662237	rs10249885	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	30666638	rs191421785	G	A	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-1.266;QD=21.22;ReadPosRankSum=-1.111;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:39,48:0.55:87
chr7	30666645	rs183656397	T	G	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.50;ReadPosRankSum=-0.097;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:45,50:0.53:95
chr7	30670957	rs115985185	T	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.27;ReadPosRankSum=0.114;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	30671087	rs14270	T	C	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.662;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:155,162:0.51:317
chr7	30673345	rs2240401	C	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,132:0.53:250
chr7	30673401	rs4593	A	G	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:147,124:0.46:271
chr7	30673446	rs190132116	G	A	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.268;QD=8.20;ReadPosRankSum=0.577;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:111,77:0.41:188
chr7	30694260	rs3779250	C	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr7	30694534	rs189224751	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr7	30695388	rs111415208	A	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr7	30695393	rs148095983	G	GA	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr7	30695406	rs7812133	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	30701812	rs8192498	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,88:0.45:194
chr7	30702244	rs2270008	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr7	30705105	rs8192496	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr7	30728472	rs917196	C	G	4352.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:287,231:0.45:518
chr7	30728557	rs58682124	A	G	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:142,104:0.42:246
chr7	30728908	rs255100	A	T	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:105,94:0.47:199
chr7	30739691	rs107540	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.222;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr7	30791848	rs4723010	G	A	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:164,154:0.48:318
chr7	30795288	rs2302339	A	G	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:250,219:0.47:469
chr7	30795436	rs4720015	T	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr7	30805811	rs2013200	T	A,TCACA	2509.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.765;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=-0.082;QD=29.18;ReadPosRankSum=1.025;SOR=1.771;set=HC	GT:AD:AF:DP	1/2:4,53,29:0.62,0.34:86
chr7	30805913	rs3901848	G	A	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:200,204:0.50:404
chr7	30831082	rs12701034	C	T	8065.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	0/1:386,406:0.51:792
chr7	30831144	rs16875355	C	T	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:197,209:0.51:406
chr7	30876123	rs10247874	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr7	30876432	rs10258097	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr7	30911984	rs3801323	G	T	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:109,111:0.50:220
chr7	30912007	rs3801324	C	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr7	30915262	rs10215354	CA	TG	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;JOINED;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr7	30922467	rs10252929	G	C	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.654;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:105,131:0.56:236
chr7	30922478	rs10252754	C	G	3600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=1.258;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:147,175:0.54:322
chr7	30963296	rs67184369	A	AGGGAG	1979.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr7	31014805	rs77218088	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr7	31117446	rs111558685	TGTTG	T	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.457;QD=16.56;ReadPosRankSum=-0.123;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	31121501	rs2302475	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	31125082	rs11410563	A	AG	2942.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	31132235	rs112436908	CT	C	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.173;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:179,76:0.30:255
chr7	31135471	rs2267734	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	31145998	rs9784952	G	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=10.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.215;SOR=1.956;set=HC	GT:AD:AF:DP	0/1:64,38:0.37:102
chr7	31378933	rs2233404	A	G	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,113:0.59:193
chr7	31594166	rs2286710	C	T	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:183,166:0.48:349
chr7	31594508	rs2286711	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr7	31609317	rs17160268	T	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,70:0.43:162
chr7	31617733	rs6945679	T	C	11932.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr7	31618008	rs10252720	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	31681728	rs73686904	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	31681765	rs10239388	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	31682453	rs4141001	C	T	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:139,148:0.52:287
chr7	31683410	rs10247620	G	A	13348.77	.	AC=1;AF=0.500;AN=2;DB;DP=1323;set=Intersection	GT:AD:AF:DP	0/1:630,667:0.51:1297
chr7	31683610	rs38398	G	A	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	31690831	rs7799540	C	T	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:136,140:0.51:276
chr7	31691697	rs3735424	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.933;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr7	31735263	rs34173	G	C	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr7	31735297	rs34174	T	G	3245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.50;ReadPosRankSum=0.310;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:67,84:0.56:151
chr7	31735300	rs2240966	G	A	3267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.23;ReadPosRankSum=0.074;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:64,83:0.56:147
chr7	31855420	rs1860789	A	G	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	31855577	rs2230175	A	C	6402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.262;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:306,314:0.51:620
chr7	31855577	.	AG	CA	1965	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=9;MMLQ=27;MQ=59.96;NF=58;NR=72;PP=1965;QD=15.5266759605;SC=TCGGCTTTGGAGTTTTTCCCA;SbPval=0.55;Source=Platypus;TC=282;TCF=126;TCR=156;TR=130;WE=31855586;WS=31855567;set=Platypus	GT:AD:AF:DP	0/1:152,130:0.46:282
chr7	31855578	rs1860790	G	A	16023.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-0.723;SOR=0.559;set=HC	GT:AD:AF:DP	1/1:5,608:0.99:613
chr7	31868064	rs17160591	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:113,77:0.41:190
chr7	31876766	rs2270218	T	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr7	31890106	rs917756	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	31890128	rs2072431	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr7	31920395	rs61729940	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:64,86:0.57:150
chr7	32091215	rs2072182	A	T	2581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.528;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:132,135:0.51:267
chr7	32092037	rs2190128	G	C	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-0.460;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr7	32110079	rs2301933	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr7	32110115	rs30598	C	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	32209227	rs977623	A	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr7	32209283	rs977624	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr7	32209425	rs977625	A	G	12346.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr7	32209459	rs977626	C	T	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:221,185:0.46:406
chr7	32338337	rs215607	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,84:0.45:188
chr7	32527009	rs7800049	G	A	7809.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:360,397:0.52:757
chr7	32528366	rs35608030	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr7	32529936	rs1584614	G	C	6410.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:298,327:0.52:625
chr7	32591158	rs3213973	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.93;ReadPosRankSum=-0.204;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	32593234	rs10717407	CT	C	784.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=8.886;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=12.07;ReadPosRankSum=1.664;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,55:0.85:65
chr7	32593271	rs6961786	G	A	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.016;QD=9.91;ReadPosRankSum=-0.440;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:64,68:0.52:132
chr7	32597989	rs147955430	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.109;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr7	32598087	rs12673921	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr7	32598138	rs12673881	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr7	32598359	rs1562828	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	32598524	rs1466144	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	32598630	rs2290213	T	A	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:135,137:0.50:272
chr7	32598656	rs2290214	C	T	3076.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:156,156:0.50:312
chr7	32599204	rs34973430	A	AT	164.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	32609565	rs2305320	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	32613020	rs1993050	A	G	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr7	32615553	rs6462381	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,116:0.61:189
chr7	32620325	rs35499747	T	TTG	408.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr7	32623322	rs67384597	A	G	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-1.119;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:51,65:0.56:116
chr7	32623477	rs34778959	C	G	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:240,210:0.47:450
chr7	32660137	rs201339873	CCA	C	1092.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=51.59;MQRankSum=-1.579;QD=12.56;ReadPosRankSum=1.264;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:56,31:0.36:87
chr7	32715474	rs34569336	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-1.463;QD=3.05;ReadPosRankSum=0.212;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	32772477	rs2923266	C	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-9.168;QD=3.77;ReadPosRankSum=0.181;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr7	32909182	rs752730	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:237,178:0.43:415
chr7	32956941	rs139835645	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.62;QD=25.94;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	32997156	rs112700943	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	33016120	rs3750116	G	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	33059407	rs2392209	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	33060946	rs3750117	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	33102462	rs13228639	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	33102514	rs13228827	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	33136983	rs6462460	G	A	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	33186082	rs1969575	C	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	33217071	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.526;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr7	33217151	rs78283245	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,72:0.58:125
chr7	33380598	rs11981364	G	T	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr7	33380673	rs10486527	T	C	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	33385852	rs6974593	C	T	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	33388618	rs9785054	C	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	33644948	rs1050721	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr7	33644976	rs59454255	A	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr7	33767344	.	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr7	33977125	.	G	GGTGTGTGTGTGT	587	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=19;MQ=60.0;NF=0;NR=4;PP=587;QD=147.75;SC=GGAGAAGTAGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=4;WE=33977133;WS=33977115;set=Platypus	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	34009946	rs10265207	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr7	34094687	rs17169636	A	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr7	34125420	rs77064045	G	T	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:176,184:0.51:360
chr7	34192762	rs6968741	G	C	11245.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr7	34685772	rs1582277	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	34687709	rs114289204	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr7	34698210	rs2530548	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:149,132:0.47:281
chr7	34698234	rs2530549	A	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:115,94:0.45:209
chr7	34698251	rs2530550	C	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,63:0.42:150
chr7	34698321	rs2530551	A	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.53;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	34698321	.	ACAACAAGCTG	GCAACAAGCTG,GCAACAAGCTT	159	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=26;MMLQ=27;MQ=60.0;NF=2,1;NR=22,9;PP=70,159;QD=4.36546718947;SC=AAGTGCTAAAACAACAAGCTG;SbPval=0.6;Source=Platypus;TC=24;TCF=2;TCR=22;TR=24,10;WE=34698339;WS=34698311;set=Platypus	GT:AF:DP	0/1:1.00:24
chr7	34698331	rs401256	G	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.909;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	34699826	rs35018938	AG	A	9053.73	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:431,314:0.42:745
chr7	34699973	rs2530553	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	34724373	rs11290993	CA	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.748;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:36,31:0.46:67
chr7	34725283	rs17169985	T	A	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.501;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:24,45:0.65:69
chr7	34725322	rs740623	T	A	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr7	34725539	rs1419837	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	34867255	rs5883474	C	CA	874.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr7	34874229	rs75517646	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr7	34888010	rs10270521	T	C	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr7	34889182	rs6972158	A	G	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.168;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:134,126:0.48:260
chr7	34889222	rs10275028	T	C	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.472;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:128,111:0.46:239
chr7	34917740	rs7809642	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:104,104:0.50:208
chr7	34979707	rs114622245	A	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=0.925;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	34979748	.	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-1.561;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr7	34982211	rs202077354	C	G	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-3.727;QD=7.20;ReadPosRankSum=-0.412;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr7	34997749	rs146005703	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr7	35225518	rs10262841	C	A	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr7	35280693	rs2072434	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.838;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr7	35288276	rs17675148	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.204;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=8.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-1.118;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr7	35289529	.	C	CACCCCCA	1052.73	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr7	35289889	rs5883498	C	CA	1947.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	35289941	rs5883499	C	CA	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	35293193	rs336283	A	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	35414453	rs17608167	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	35414769	rs2553113	C	T	17928.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	35414772	rs2553114	C	T	17743.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr7	35678214	rs3816422	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.63;ReadPosRankSum=0.253;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	35840898	rs59008252	G	GC	4272.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	35851738	.	CA	AA	79	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=18;HapScore=4;MGOF=18;MMLQ=8;MQ=57.79;NF=0,0;NR=5,5;PP=51,79;QD=17.1542425094;SC=GTCTCCAAAACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18;TCF=8;TCR=10;TR=5,5;WE=35851746;WS=35851728;set=Platypus	GT:AD:AF:DP	0/1:13,5:0.28:18
chr7	35851738	.	CA	C	79	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=18;HapScore=4;MGOF=18;MMLQ=8;MQ=57.79;NF=0,0;NR=5,5;PP=51,79;QD=17.1542425094;SC=GTCTCCAAAACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18;TCF=8;TCR=10;TR=5,5;WE=35851746;WS=35851728;set=Platypus	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	35886603	rs2727852	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr7	35886783	rs149785450	C	CA	3090.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chr7	35928678	rs58918750	T	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	36124292	rs1986593	G	A	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	36320821	rs196586	G	A	11534.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr7	36324435	rs196589	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr7	36327317	rs196594	C	T	6038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-1.059;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:285,303:0.52:588
chr7	36327410	rs196595	A	G	2901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-2.583;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:96,141:0.59:237
chr7	36338749	rs196613	T	C	6943.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:319,354:0.53:673
chr7	36338841	rs196614	T	C	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:150,202:0.57:352
chr7	36370499	rs196659	C	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	36370555	rs196660	G	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,85:0.49:173
chr7	36445856	rs197367	G	A	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:186,169:0.48:355
chr7	36447287	rs10227127	A	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	36447349	rs143969069	A	ACTT	2114.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr7	36447600	rs3801315	T	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr7	36456613	rs59969538	AC	A	33.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	36463335	rs2302527	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	36465570	rs6957214	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	36465606	rs375398580	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.010;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr7	36552729	rs59476355	A	AT	8618.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	36552790	rs57543920	G	GT	10160.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	36561469	rs6462681	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	36580111	rs117556863	A	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr7	36588405	rs5883561	A	AC	632.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=60.79;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	36589186	rs56036432	C	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr7	36656035	rs3735386	G	C	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:249,213:0.46:462
chr7	36656147	rs2727818	A	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	36656205	rs13235549	A	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	36661423	rs2727822	T	C	8754.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr7	36698684	rs6959295	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr7	36726136	rs60875600	AT	A	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr7	36726476	rs58947801	CGTGT	C,CGT	2007.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.59;QD=32.91;SOR=2.437;set=HC	GT:AD:AF:DP	1/2:0,40,21:0.66,0.34:61
chr7	36729757	rs7790095	T	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	36729822	rs11427708	C	CA	4644.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	36729951	rs6462691	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	36763560	rs6462703	C	T	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr7	36763672	rs2228410	C	T	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:169,153:0.48:322
chr7	36763688	rs2228411	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr7	36895342	rs13246439	C	T	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:76,77:0.50:153
chr7	36901503	rs114421886	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	36934448	rs6462722	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	37025521	rs17170816	T	C	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:161,181:0.53:342
chr7	37172594	rs5883589	AT	A	218.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.800;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr7	37252929	rs7809365	T	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	37253093	rs7809548	T	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	37256392	rs7806425	G	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	37256457	rs145031529	AT	A	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr7	37257580	rs6462745	C	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	37262140	rs2302668	C	T	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:90,106:0.54:196
chr7	37298800	rs2717968	C	T	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	37299056	rs2717969	C	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	37311272	rs79055895	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr7	37311517	rs17257293	T	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr7	37355361	rs17170984	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	37355590	rs11383031	C	CT	2612.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	37382465	rs60600003	T	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	37889786	rs10271309	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	37901581	rs2249451	G	A	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	37903853	rs3816419	A	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr7	37903904	rs3816418	C	T	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	37904099	rs3816417	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	37907304	rs10250905	T	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	37907527	rs116545712	T	C	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:147,153:0.51:300
chr7	37933983	rs10260487	C	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.572;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	37934146	rs56128139	TA	CT	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr7	37934234	rs10261071	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=0.792;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	37936530	rs3213975	T	C	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:139,150:0.52:289
chr7	37951726	rs1132553	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	37960262	rs201513905	AAGGCAGTGGCAGC	A	10185.73	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:275,269:0.49:544
chr7	37960835	rs13240429	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr7	37960955	rs4723716	T	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	37966201	rs12666164	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	37988589	rs2044831	C	T	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	37989775	rs1450851	T	C	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	38268395	rs7795499	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.104;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:58,27:0.32:85
chr7	38282130	rs35917252	G	GGT	2674.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:177,103:0.37:280
chr7	38282166	rs2009434	T	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr7	38284649	rs112543808	A	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr7	38284794	rs2008893	C	T	4559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.815;QD=8.89;ReadPosRankSum=1.241;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:368,145:0.28:513
chr7	38284804	rs4629747	T	C	4403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-5.947;QD=8.65;ReadPosRankSum=1.519;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:378,131:0.26:509
chr7	38284808	rs4434531	A	C	4327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-6.009;QD=8.50;ReadPosRankSum=1.038;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:380,129:0.25:509
chr7	38284834	rs67534383	A	G	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:413,101:0.20:514
chr7	38284854	rs73360756	C	T	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:363,68:0.16:431
chr7	38284887	.	T	G	711	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=1;MGOF=90;MMLQ=19;MQ=58.86;NF=27;NR=42;PP=711;QD=10.8082784427;SC=TTTGTCAAGGTGTGTGTGTGT;SbPval=0.63;Source=Platypus;TC=220;TCF=90;TCR=130;TR=69;WE=38284895;WS=38284875;set=Platypus	GT:AD:AF:DP	1/0:151,69:0.31:220
chr7	38289121	rs1053756	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:191,111:0.37:302
chr7	38292857	.	G	A	66	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=27;MQ=47.11;NF=7;NR=1;PP=66;QD=12.5964015684;SC=GTCTCTCCTAGGATTTCTACA;SbPval=0.83;Source=Platypus;TC=29;TCF=23;TCR=6;TR=8;WE=38292865;WS=38292847;set=Platypus	GT:AD:AF:DP	1/0:21,8:0.28:29
chr7	38296130	rs6462828	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr7	38299727	rs138027161	T	C	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=47.49;MQRankSum=-4.916;QD=6.05;ReadPosRankSum=1.223;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:166,95:0.36:261
chr7	38299872	.	C	T	473	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=43.28;NF=0;NR=24;PP=473;QD=21.1571338561;SC=GAATAAGATACATTAATGCGA;SbPval=1.0;Source=Platypus;TC=50;TCF=4;TCR=46;TR=24;WE=38299880;WS=38299862;set=Platypus	GT:AD:AF:DP	0/1:26,24:0.48:50
chr7	38301741	rs2392542	T	A	4314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=1.242;QD=9.50;ReadPosRankSum=-0.318;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:235,219:0.48:454
chr7	38304926	rs3901405	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr7	38305340	rs2302343	A	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=9.789;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-6.073;QD=6.61;ReadPosRankSum=-1.961;SOR=2.404;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr7	38313195	rs60737043	G	T	3890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-0.745;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:260,206:0.44:466
chr7	38331271	rs1860520	C	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:152,166:0.52:318
chr7	38331504	rs1860521	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr7	38356545	rs17171329	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr7	38356943	rs34482025	G	GA	5268.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr7	38357075	rs11769443	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr7	38388604	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=40.43;MQRankSum=-1.579;QD=11.82;ReadPosRankSum=0.328;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	38388606	.	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=9.700;MLEAC=1;MLEAF=0.500;MQ=40.38;MQRankSum=-1.699;QD=10.35;ReadPosRankSum=0.414;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr7	38388851	rs62445008	T	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr7	38388889	rs1810378	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr7	38393241	rs1882767	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr7	38393403	rs2017501	G	A	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:267,232:0.46:499
chr7	38393598	rs2540195	C	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,94:0.51:183
chr7	38397867	rs370983159	G	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=1.355;QD=7.33;ReadPosRankSum=-0.965;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:73,53:0.42:126
chr7	38398019	rs2471878	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=11.604;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=0.579;QD=0.50;ReadPosRankSum=-1.184;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr7	38398250	rs3999871	C	T	6759.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:292,342:0.54:634
chr7	38398564	rs1810377	AG	GC	14758.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	38402496	rs2735118	A	G	15439.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.083;QD=25.48;ReadPosRankSum=1.657;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:1,605:1.00:606
chr7	38402781	rs2011898	A	G	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	38424663	rs62446763	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr7	38431436	rs1058656	C	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr7	38431644	rs79759611	G	GC	1768.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	38460546	rs1019287	G	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	38462154	rs375704567	GTATC	G	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.445;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr7	38467842	rs1544636	A	G	12272.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:2,476:1.00:478
chr7	38467923	rs6958300	A	G	10679.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,416:1.00:418
chr7	38468463	rs2267808	C	T	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	38468695	rs2392572	C	T	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr7	38469636	rs10253674	G	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	38471748	rs41279579	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	38543103	rs10225047	T	G	3734.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=35.57;ReadPosRankSum=-0.549;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:3,102:0.97:105
chr7	38543104	rs10268443	G	C	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=16.213;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=18.43;ReadPosRankSum=0.700;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:22,91:0.81:113
chr7	38543371	rs6946268	C	T	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	38725804	rs11980087	C	T	14590.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr7	38725883	rs12701651	C	A	6214.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:315,307:0.49:622
chr7	38765725	rs112468126	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr7	38780883	rs6951429	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	38780924	rs6975410	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	38782944	rs11971020	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr7	38782951	rs10254567	G	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.081;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr7	38796570	rs2240350	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr7	38796748	rs2392599	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	38810880	rs11431870	T	TA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.799;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr7	38813711	rs976350	C	T	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	38816441	rs1468347	A	G	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	38816487	rs4236355	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	38857364	rs2072248	G	A	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	38860809	rs77229707	G	T	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:135,114:0.46:249
chr7	38860933	rs56002981	A	G	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:102,132:0.56:234
chr7	38869708	rs7790054	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	39125413	rs1950001	T	G	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.253;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:107,80:0.43:187
chr7	39243750	rs4507668	A	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:77,83:0.52:160
chr7	39243963	rs35792719	T	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:96,112:0.54:208
chr7	39243978	rs35489214	A	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr7	39500223	.	C	T	812.77	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:189,62:0.25:251
chr7	39500352	rs885689	C	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr7	40087320	rs57364877	GT	G	147.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.312;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr7	40134678	rs17538328	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	40173680	rs116048314	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	40220412	rs7778061	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	40220507	rs2036041	C	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr7	40228235	rs115327068	A	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	40229072	rs4720354	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.808;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	40234742	rs11326652	CT	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.727;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr7	40314243	rs4637704	A	G	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:128,124:0.49:252
chr7	40356315	rs10245165	A	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	40356554	.	G	GTTTT	666.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.04;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	40489083	rs7809620	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr7	40538810	rs10249126	A	C	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	40899967	rs2010706	G	C	4079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-1.588;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:232,212:0.48:444
chr7	41368666	.	T	TGAAAGAAA	221.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	41533530	rs145042371	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	41740067	rs111584790	A	AT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.844;QD=8.99;ReadPosRankSum=-1.784;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	42064852	rs846273	C	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	42084829	rs699493	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	42088222	rs846266	T	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	42187734	rs113509347	GCACACA	G	1310.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr7	42212210	rs76999720	C	T	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:152,117:0.43:269
chr7	42262935	rs11266806	GA	G	517.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.686;QD=12.33;ReadPosRankSum=1.252;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr7	42950640	rs643138	C	T	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	42951515	rs647117	G	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	42957465	rs71008875	ATT	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	42970733	rs619664	C	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	42974827	rs601057	A	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	42976789	rs630191	A	G	9843.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr7	42977091	rs631132	G	A	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	43190479	rs12702015	T	G	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:147,181:0.55:328
chr7	43400656	rs5883865	CGTGTGT	C,CGT	640.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	0/1:0.68:28
chr7	43483981	rs61756574	G	C	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:191,176:0.48:367
chr7	43484310	rs73098706	T	C	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:120,88:0.42:208
chr7	43485248	rs6960889	A	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	43490303	rs73329806	A	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr7	43495878	rs3214631	C	CT	1195.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr7	43506059	rs2304329	A	G	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr7	43540264	rs2304325	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:116,134:0.54:250
chr7	43540513	rs78224160	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr7	43540782	rs71649293	CTTT	C	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.040;QD=11.76;ReadPosRankSum=-2.000;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr7	43540887	rs17339479	A	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr7	43546604	rs7810051	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	43546617	rs117689113	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr7	43548516	rs2304323	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	43548857	rs9639877	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr7	43591832	rs56111512	G	A	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:115,104:0.47:219
chr7	43591955	rs4724220	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr7	43622806	rs10251937	T	C	2635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.098;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:154,139:0.47:293
chr7	43623123	rs2241738	C	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.07;ReadPosRankSum=0.238;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr7	43647879	rs11555026	C	T	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:188,136:0.42:324
chr7	43664198	rs10233697	A	G	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:191,169:0.47:360
chr7	43664280	rs1044141	A	G	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	43664477	rs15866	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	43684803	rs2302031	C	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	43685150	rs10263142	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	43686194	rs970134	G	A	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:264,218:0.45:482
chr7	43686224	rs970135	C	T	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:226,188:0.45:414
chr7	43687074	rs143305109	TGGA	T	1179.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr7	43687296	rs2240516	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	43687967	rs17531127	G	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	43810695	rs699511	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	43810764	rs699512	G	A	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	43810820	rs10234057	C	T	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:254,213:0.46:467
chr7	43827373	rs17239537	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr7	43827414	rs849165	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:80,81:0.50:161
chr7	43846603	rs7738	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr7	43908866	rs2730608	C	T	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.063;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:95,84:0.47:179
chr7	43916727	rs2232108	T	G	6685.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:307,318:0.51:625
chr7	43917013	rs2232105	G	A	8211.77	.	AC=1;AF=0.500;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	0/1:448,414:0.48:862
chr7	43917274	rs2232103	A	G	6004.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:454,324:0.42:778
chr7	43945982	rs200939452	G	GC	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	43982341	rs2074728	G	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr7	43982482	rs2074727	A	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:137,144:0.51:281
chr7	44027348	rs2330943	A	G	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:144,130:0.47:274
chr7	44081323	rs3099757	C	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=5.755;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-9.846;QD=1.99;ReadPosRankSum=-2.337;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr7	44084292	rs4430012	C	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.885;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr7	44097696	rs6968228	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr7	44147567	rs58863562	C	CG	10084.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	44148553	rs2595701	A	G	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:184,125:0.40:309
chr7	44149270	rs11975687	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:137,117:0.46:254
chr7	44149374	rs11979310	T	A	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:196,226:0.54:422
chr7	44150249	rs73693651	G	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr7	44151009	rs62460065	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr7	44151666	rs73693653	G	A	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:200,200:0.50:400
chr7	44152119	rs11377645	A	AG	2653.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	44152549	rs41279612	G	A	5225.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:250,251:0.50:501
chr7	44153082	rs67670401	G	GC	4042.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	44153115	rs34515254	G	GC	4298.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	44153780	rs13928	A	G	4538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=3.642;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:294,234:0.44:528
chr7	44154865	rs5883885	A	AG	6470.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	44156146	rs3087367	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr7	44156852	rs41279615	G	A	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:296,234:0.44:530
chr7	44157770	rs34484835	G	GC	2062.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	44179223	rs6953355	A	T	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:108,123:0.53:231
chr7	44180079	rs5883888	A	AG	6536.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	44180652	rs4440539	G	T	8449.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:426,395:0.48:821
chr7	44185088	rs2908274	G	A	2875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.296;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:135,138:0.51:273
chr7	44185758	rs2971680	C	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.285;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.041;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr7	44189321	rs2268574	A	G	3645.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:147,178:0.55:325
chr7	44189692	rs35723429	C	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr7	44190468	rs2268573	T	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	44197583	rs2070971	G	T	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.530;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:43,54:0.56:97
chr7	44245853	rs917793	A	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr7	44250826	rs2072439	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-1.017;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:23,43:0.65:66
chr7	44259554	rs149624128	T	TG	2766.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	44259561	rs138799733	G	GC	2940.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	44268785	rs917791	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr7	44272314	rs5883896	G	GC	107	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=26.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	44280562	rs73095923	C	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	44281475	rs2075073	T	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr7	44281702	rs35663812	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr7	44282369	rs35452037	T	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr7	44282868	rs11542228	A	G	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:122,116:0.49:238
chr7	44284564	rs2075069	A	G	7104.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:423,375:0.47:798
chr7	44432092	rs113443436	C	G	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:212,191:0.47:403
chr7	44442296	rs1473114	A	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	44555625	rs114503245	T	C	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.469;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:118,101:0.46:219
chr7	44606098	rs6656	C	T	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	44606184	rs2304372	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	44606217	rs217381	C	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	44608718	rs2289051	C	T	10892.77	.	AC=1;AF=0.500;AN=2;DB;DP=1202;set=Intersection	GT:AD:AF:DP	0/1:631,562:0.47:1193
chr7	44610490	rs217376	C	T	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:225,180:0.44:405
chr7	44611077	rs217375	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr7	44612347	rs217374	G	C	9314.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	44612454	rs217373	C	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:149,98:0.40:247
chr7	44612753	rs217372	T	C	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr7	44613103	rs217371	A	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr7	44613611	rs11308115	CG	C	9049.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr7	44619302	rs217361	T	C	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr7	44620836	rs8580	C	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	44620855	rs3750098	A	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr7	44695725	rs2268314	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr7	44713264	rs3735474	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr7	44714694	rs3832521	AG	A	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	44715476	rs372547546	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.361;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr7	44734323	rs11976239	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr7	44737679	rs17133935	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-1.187;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:54,29:0.35:83
chr7	44737716	rs3216978	T	TAAG	1485.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:80,41:0.34:121
chr7	44737922	rs3213662	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	44747499	rs2070606	G	A	7294.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:343,350:0.51:693
chr7	44799945	rs367592946	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr7	44802401	rs4720479	A	C	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	44836314	rs6850	A	G	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.371;QD=9.94;ReadPosRankSum=0.514;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:55,58:0.51:113
chr7	44839616	rs6463247	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	44839996	.	G	GTTT	322.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-3.333;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr7	44839997	rs57466816	CT	C,TT	617.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.002;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.66;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-1.595;SOR=0.958;set=HC	GT:AD:AF:DP	1/2:25,51,22:0.52,0.22:98
chr7	44869537	rs1297837	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr7	44924627	rs6966024	A	C	6872.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:340,342:0.50:682
chr7	45002304	rs201676451	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr7	45003462	rs10230010	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr7	45004063	rs7792760	T	C	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	45009325	rs3735484	G	A	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr7	45009341	rs3735485	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	45009723	rs11555636	G	A	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:165,159:0.49:324
chr7	45010734	rs7789375	G	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr7	45011221	rs78679712	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr7	45067267	rs2289365	G	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,80:0.51:158
chr7	45083227	.	C	CAA	36	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=0.5652;HP=14;HapScore=4;MGOF=6;MMLQ=26;MQ=58.95;NF=0;NR=4;PP=36;QD=10.0;SC=GACTCCATCCCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=45083235;WS=45083217;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	45103481	rs2304689	A	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr7	45104131	rs11552377	G	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr7	45104372	rs73107990	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	45111303	rs140285520	AG	A	1147.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr7	45111482	rs1001349	A	T	10425.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	45112902	rs10272243	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	45113170	rs2289367	G	A	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:103,111:0.52:214
chr7	45114089	rs2289370	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr7	45119946	rs35199312	T	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	45120248	rs1132130	G	A	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:205,211:0.51:416
chr7	45120453	rs10264280	C	T	12435.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,468:1.00:469
chr7	45122324	rs3735493	C	A	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:103,124:0.55:227
chr7	45122464	rs10243185	A	C	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:129,161:0.56:290
chr7	45122723	rs61740895	G	A	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:244,258:0.51:502
chr7	45123906	.	T	G	66	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=24;MQ=52.16;NF=8;NR=2;PP=66;QD=10.0771212547;SC=TGGGACACAATCGTGGCTGCA;SbPval=0.84;Source=Platypus;TC=40;TCF=28;TCR=12;TR=10;WE=45123914;WS=45123896;set=Platypus	GT:AD:AF:DP	1/0:30,10:0.25:40
chr7	45123925	.	C	T	439	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=3;MGOF=23;MMLQ=18;MQ=55.64;NF=13;NR=6;PP=439;QD=24.9353269762;SC=CAGCCACAGGCTTTGGGGCTG;SbPval=0.73;Source=Platypus;TC=52;TCF=33;TCR=19;TR=19;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:33,19:0.37:52
chr7	45123937	.	T	C	439	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=3;MGOF=23;MMLQ=24;MQ=56.85;NF=10;NR=9;PP=439;QD=24.9353269762;SC=TTGGGGCTGATGAGAGATCTG;SbPval=0.33;Source=Platypus;TC=54;TCF=33;TCR=21;TR=19;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	0/1:35,19:0.35:54
chr7	45124008	rs7777835	T	C	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr7	45124286	rs3735494	A	G	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:205,174:0.46:379
chr7	45124465	rs3735495	A	T	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:135,166:0.55:301
chr7	45125665	rs34135761	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr7	45125775	rs9791417	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr7	45139892	rs4553	G	A	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	45139919	rs2289373	A	C	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:201,221:0.52:422
chr7	45140914	rs1042984	C	T	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:219,200:0.48:419
chr7	45141667	rs111825120	C	T	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:147,85:0.37:232
chr7	45142834	rs2289374	G	C	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	45143090	rs59494919	G	GGACAGCC	3109.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	45143093	.	C	G	2986.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	45143108	rs2119056	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	45144403	rs2289375	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	45144494	rs2289376	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	45148322	rs142768320	G	GC	772.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr7	45216761	rs1294940	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr7	45216926	rs10272187	G	A	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:291,292:0.50:583
chr7	45225609	rs66534022	GGTGTATGT	G	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:56,17:0.23:73
chr7	45225654	rs57477578	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:84,31:0.27:115
chr7	45225704	rs56844881	C	T	1632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.616;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:122,47:0.28:169
chr7	45225708	rs13222185	A	G	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.661;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:125,52:0.29:177
chr7	45225838	rs11767359	AA	TC	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;JOINED;set=Intersection	GT:AD:AF:DP	0/1:147,136:0.48:283
chr7	45225854	rs11767365	A	G	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:136,118:0.46:254
chr7	45225956	rs71548262	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	45697195	rs73694825	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr7	45697295	rs2461131	C	G	3670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=0.707;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:99,99:0.50:198
chr7	45697295	.	CCT	GCC	1610	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=24;MQ=59.88;NF=33;NR=13;PP=1610;QD=36.1623451057;SC=CAAGGTGGGCCCTAGCCCCAC;SbPval=0.61;Source=Platypus;TC=101;TCF=71;TCR=30;TR=46;WE=45697305;WS=45697285;set=Platypus	GT:AD:AF:DP	0/1:55,46:0.46:101
chr7	45697297	rs2471231	T	C	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=1.243;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:101,88:0.47:189
chr7	45703971	rs1042009	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,89:0.45:198
chr7	45743403	rs2461114	G	A	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,94:0.45:210
chr7	45932669	rs4619	A	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr7	45954692	rs10255707	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr7	45957161	rs143703989	GT	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.524;QD=6.78;ReadPosRankSum=0.174;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	45960645	rs2854746	G	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr7	46732428	rs700747	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	46736733	rs71003346	GA	G	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	47242897	rs2728465	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	47317510	rs3750163	G	A	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	47319723	rs4720590	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	47319852	rs6971754	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	47323456	rs3750164	A	G	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	47332238	rs884824	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	47408029	rs2255744	A	G	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:191,173:0.48:364
chr7	47408299	rs76229426	G	A	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:126,156:0.55:282
chr7	47408974	rs1534136	T	A	4958.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:277,245:0.47:522
chr7	47436558	rs2177795	A	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	47445108	rs75816823	C	T	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:225,218:0.49:443
chr7	47451223	rs10452818	T	G	288.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	47451295	rs834607	A	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	47463842	rs834599	T	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr7	47467864	rs1799370	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr7	47475047	rs147902788	CCTT	C	5143.73	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:146,135:0.48:281
chr7	47479335	rs17172859	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr7	47479377	rs17172860	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr7	47481628	rs16881490	C	T	4860.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:228,242:0.51:470
chr7	47481786	rs1620852	A	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	47546375	rs334496	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	47546466	rs73095186	G	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=2.044;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr7	47546547	rs334497	G	A	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-0.337;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:16,82:0.84:98
chr7	47568718	rs10261525	C	T	3736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.671;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:242,200:0.45:442
chr7	47568841	rs11983184	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	47578772	rs334506	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	47698685	rs12531737	A	G	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:133,103:0.44:236
chr7	47835027	rs9719534	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr7	47840084	rs3734933	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	47840510	rs1466203	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	47842749	rs3832463	C	CAA	1522.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr7	47847679	rs1074780	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	47853413	rs6944477	A	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:121,96:0.44:217
chr7	47853498	rs6463449	C	T	9870.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr7	47859239	rs3757379	C	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr7	47869751	rs6463451	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr7	47870704	.	T	C	460.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr7	47878993	rs6960394	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr7	47884829	rs1980279	C	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	47886707	rs10280228	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	47905044	rs7782964	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	47913459	rs62447062	T	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	47913560	rs78833972	G	T	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:244,216:0.47:460
chr7	47913579	rs1470859	TG	CA	18873.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr7	47913615	rs17131867	G	A	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr7	47913737	rs73105163	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr7	47915543	rs12113549	T	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	47915651	rs4724654	G	C	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	47915677	rs4724655	A	G	8590.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr7	47915890	rs4724656	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	47916995	rs2348662	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	47920225	rs17131893	G	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	47920298	rs17131896	G	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	47920345	rs62447081	G	A	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	47920450	rs17131899	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	47920482	rs78574665	AG	GT	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	47920499	rs62447082	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	47920583	rs9691249	G	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	47924454	rs10464386	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr7	47925331	rs10274334	C	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,71:0.44:160
chr7	47927649	rs17131909	C	T	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:175,173:0.50:348
chr7	47933447	rs113440880	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	47933494	rs17131915	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr7	47944349	rs144832432	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr7	47947863	rs1474283	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr7	47976287	rs2708878	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	47979922	rs2708913	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=10.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.539;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:71,48:0.40:119
chr7	48004901	rs3176608	G	A	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr7	48010978	rs2708864	T	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:93,58:0.38:151
chr7	48015080	rs143900330	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr7	48018376	rs2307253	G	A	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:187,145:0.44:332
chr7	48026834	rs59522165	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,63:0.45:141
chr7	48028664	rs6978458	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr7	48035532	rs36076226	CTT	C	41.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	48035893	rs2708899	T	C	63.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.76;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr7	48045416	rs11767002	C	T	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	48045447	rs34145615	T	TC	671.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=16.659;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=0.707;QD=19.76;ReadPosRankSum=-0.563;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr7	48046714	rs1574242	G	A	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr7	48058152	rs1915963	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	48065403	rs17132030	T	C	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:170,197:0.54:367
chr7	48068258	rs7357251	G	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	48074984	rs1915971	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	48075030	rs1915972	C	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr7	48080944	rs17132050	C	T	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:249,246:0.50:495
chr7	48081095	rs10951942	G	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:113,114:0.50:227
chr7	48083339	rs6978838	A	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	48086077	rs2708912	C	T	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	48086161	rs10233232	T	C	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	48089394	rs909059	T	C	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	48089542	rs2686788	T	C	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	48089571	rs2708890	C	A	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	48092486	rs2686791	T	C	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	48092601	rs17547209	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:197,134:0.40:331
chr7	48092644	rs17629333	C	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:169,119:0.41:288
chr7	48092847	rs2686792	C	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	48094229	rs7803787	C	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,107:0.43:246
chr7	48094442	.	A	AGAT	211	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=41;MMLQ=27;MQ=59.97;NF=4;NR=3;PP=211;QD=31.5714285714;SC=AACAGGATGAAGATGATGATG;SbPval=0.05;Source=Platypus;TC=19;TCF=4;TCR=15;TR=7;WE=48094450;WS=48094432;set=Platypus	GT:AD:AF:DP	1/0:12,7:0.37:19
chr7	48099738	rs6463460	G	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.143;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	48100016	rs7790252	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	48141653	rs147875049	A	G	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:105,125:0.54:230
chr7	48210947	rs36157513	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr7	48232479	rs145553059	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	48232530	.	AT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.407;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr7	48269679	rs60553397	G	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	48273869	rs7357106	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr7	48280438	rs73341723	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr7	48280454	rs62449168	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr7	48284064	rs1949897	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	48284344	rs17132168	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr7	48285664	rs1405127	A	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	48287840	rs2361519	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr7	48288122	rs12112998	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-0.329;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	48288129	rs12112608	A	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.694;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	48311563	rs17712293	T	G	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:248,213:0.46:461
chr7	48313949	rs6583483	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr7	48314279	rs6955212	G	A	5738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.526;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:299,287:0.49:586
chr7	48314798	rs13233225	G	T	4474.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:220,229:0.51:449
chr7	48315796	rs1880736	C	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	48317683	rs10246853	A	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.28;ReadPosRankSum=-0.094;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	48318811	rs2222648	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	48335265	rs10280046	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	48336844	rs6583546	C	T	2553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.165;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:123,132:0.52:255
chr7	48352570	rs56322731	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr7	48391642	rs4145714	G	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr7	48415892	rs2163938	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	48428715	rs17132289	A	T	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:176,184:0.51:360
chr7	48431389	rs113609560	T	TA	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr7	48431762	rs7780299	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	48443570	rs6978753	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr7	48450097	rs62447267	C	T	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:251,260:0.51:511
chr7	48450157	rs17548783	T	C	9285.77	.	AC=1;AF=0.500;AN=2;DB;DP=1004;set=Intersection	GT:AD:AF:DP	0/1:507,486:0.49:993
chr7	48450289	rs62447268	C	G	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:142,122:0.46:264
chr7	48451939	rs1865195	T	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr7	48452200	rs7789493	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,115:0.54:213
chr7	48506566	rs4917152	A	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:86,52:0.38:138
chr7	48506642	rs4917153	A	G	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:170,96:0.36:266
chr7	48506707	rs4917154	A	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:134,51:0.28:185
chr7	48506727	rs4917155	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:94,34:0.27:128
chr7	48511297	rs7810026	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.943;SOR=1.627;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr7	48520780	rs4472462	A	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,90:0.45:198
chr7	48522845	rs1918584	CA	GG	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	48528732	rs17730186	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr7	48545879	rs6583447	A	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr7	48545976	rs6583448	A	G	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	48559593	rs115185872	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	48563752	rs11185607	A	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr7	48654746	rs10255431	C	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr7	48654761	rs10243913	G	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr7	48654769	rs10046546	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr7	48682996	rs28610321	C	G	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-2.294;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:87,75:0.46:162
chr7	48684185	rs71883124	CT	C	246.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.928;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.826;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr7	48886140	rs62454384	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.21;QD=27.07;SOR=2.129;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	48886193	rs3814470	G	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.189;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.33;MQRankSum=-1.678;QD=4.77;ReadPosRankSum=-0.349;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr7	48886383	rs146940015	G	T	189.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.35;MQRankSum=-2.287;QD=18.92;ReadPosRankSum=-0.967;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr7	48886487	rs62454385	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.28;QD=26.37;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	48886635	rs112350434	C	G	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=0.051;QD=9.96;ReadPosRankSum=0.209;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:61,63:0.51:124
chr7	48886648	rs71537796	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.77;QD=26.39;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	48886746	rs4320498	C	T	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:167,160:0.49:327
chr7	48887548	rs4404869	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:141,102:0.42:243
chr7	48964172	rs6945680	G	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	48964209	rs58317831	TG	T	3380.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	48964255	rs6968293	A	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	48964322	rs11767646	G	T	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	48965000	rs10259692	G	A	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	48965141	rs62456439	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.307;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-1.386;QD=0.57;ReadPosRankSum=0.060;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:188,32:0.15:220
chr7	48965427	rs145470654	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.02;QD=32.71;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	48965435	rs202081194	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.26;MQRankSum=0.950;QD=2.95;ReadPosRankSum=-0.968;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:112,33:0.23:145
chr7	49815390	rs769604	C	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:124,110:0.47:234
chr7	49951519	rs10639154	G	GCACACACA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=0.969;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr7	49951544	rs7792519	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,9:0.18:51
chr7	50023122	rs988392	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	50057882	.	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr7	50070921	rs1351691	C	G	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr7	50144059	rs3034461	T	TTA	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=0.755;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr7	50156916	rs6959792	C	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr7	50169508	rs1456900	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr7	50175654	rs12718244	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr7	50179609	rs1993445	C	T	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	50180972	rs1456908	C	T	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:324,253:0.44:577
chr7	50198626	rs4917120	T	C	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	50435617	rs11766800	A	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	50436033	rs10899750	A	G	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	50512857	rs10230307	C	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	50512929	rs10230343	C	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	50537677	rs11378977	C	CA	603.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.476;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=1.422;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:5,37:0.88:42
chr7	50537983	rs3757472	A	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	50544269	rs5884156	AG	A	2737.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	50545191	rs4992502	C	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	50547584	rs11575457	A	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	50547661	rs11575456	AGCCCT	A	1730.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.27;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	50566671	rs3807562	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	50566762	rs2876829	C	T	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	50611735	rs6264	T	C	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	50663299	.	T	TACACACACACAC	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.79;ReadPosRankSum=1.645;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	50671481	rs7456867	C	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	50672907	rs4947709	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	50673029	rs4947710	T	C	10042.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr7	50685602	rs11770199	T	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	50685625	rs2240498	A	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	50694457	rs1468450	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	50742118	rs2715128	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	50742180	rs1800504	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr7	50742227	rs73697054	G	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr7	50799889	rs2074777	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	50800169	rs2108350	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	51084997	rs7777979	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	51085127	rs3214180	A	AT	5526.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	51093013	rs2240087	A	T	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	51096974	rs2240090	C	T	11223.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr7	51097063	rs10230120	T	G	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	51153024	rs59837144	GT	G	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=24.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.328;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:96,47:0.33:143
chr7	51153027	.	CAATCAAAGTACTTTGTACCTATGAAGTACAAAGA	C	1717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.467;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=21.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.753;SOR=2.153;set=HC	GT:AD:AF:DP	0/1:96,49:0.34:145
chr7	51287470	rs801142	A	G	14341.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr7	51384450	rs187080219	G	A	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-3.187;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:41,84:0.67:125
chr7	53103425	rs10229800	C	A	5560.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:306,287:0.48:593
chr7	53103554	rs11238247	C	G	10490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.84;ReadPosRankSum=-0.504;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:313,310:0.50:623
chr7	53103571	rs11238248	G	A	9886.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:269,268:0.50:537
chr7	53103794	rs73357087	C	T	4895.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:226,235:0.51:461
chr7	53103946	rs12113170	G	C	6724.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:388,340:0.47:728
chr7	54610293	rs513529	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr7	54614585	rs657449	A	G	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	54614698	rs11432820	C	CG	16480.73	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr7	54820186	rs6952793	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr7	55002836	rs35747839	G	GA	1319.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr7	55002841	rs2330916	T	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr7	55086780	rs712830	A	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	55087119	rs17335717	C	A	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=-0.926;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr7	55087119	.	CCG	ACC	315	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=4;NR=7;PP=315;QD=33.4970795329;SC=ACCCCGCAGCCCGCCCAACCG;SbPval=0.84;Source=Platypus;TC=25;TCF=12;TCR=13;TR=11;WE=55087129;WS=55087109;set=Platypus	GT:AD:AF:DP	1/0:14,11:0.44:25
chr7	55087121	rs17335724	G	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=-1.110;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr7	55214348	rs2072454	C	T	13280.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,506:1.00:507
chr7	55214443	rs7801956	G	A	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:254,260:0.51:514
chr7	55218903	rs2075109	T	C	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr7	55219159	rs2075110	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	55220177	rs11506105	A	G	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	55228053	rs1558544	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr7	55238268	rs10228436	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr7	55238874	rs2227984	T	A	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:186,153:0.45:339
chr7	55240461	rs2241055	G	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr7	55242609	rs2017000	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr7	55249063	rs1050171	G	A	5946.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:314,300:0.49:614
chr7	55266417	rs1140475	T	C	11918.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	55272826	rs2692456	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	55433880	rs2272262	G	C	3618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-1.330;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:164,102:0.38:266
chr7	55433884	rs2272263	A	C	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.165;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:161,92:0.36:253
chr7	55466002	rs6973684	T	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=2.811;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	55467923	rs2272226	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr7	55468773	rs815929	C	A	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	55499058	rs815988	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	55540707	rs815957	G	A	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:266,230:0.46:496
chr7	55540791	rs712819	G	C	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr7	55560207	rs815951	C	T	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:159,191:0.55:350
chr7	55565247	.	TGGGG	T,TG	2261.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.78;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:1,44,24:0.64,0.35:69
chr7	55565480	rs815954	A	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr7	55750390	rs11238374	A	G	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-4.088;QD=3.16;ReadPosRankSum=1.997;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:300,91:0.23:391
chr7	55759098	rs79811419	G	A	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:290,232:0.44:522
chr7	55774888	rs12666519	C	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:162,131:0.45:293
chr7	55774975	rs144109770	G	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:258,209:0.45:467
chr7	55779103	rs28695422	C	T	5012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.527;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=2.906;QD=17.41;ReadPosRankSum=-1.772;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:59,229:0.80:288
chr7	55779220	rs12536949	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.37;QD=27.78;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	55780176	rs10267547	T	C	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	55780845	rs77949648	T	C	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.66;QD=26.54;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	55832361	rs28670923	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	55832454	rs4388410	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr7	55832480	rs4577914	T	C	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:122,97:0.44:219
chr7	55886794	rs73701152	C	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:88,55:0.38:143
chr7	55886935	rs200028817	ATGAAT	A	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr7	55912185	rs4294144	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr7	55991292	rs2174460	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	56022544	rs59849749	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr7	56022981	rs15892	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	56047572	rs60160896	C	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr7	56049720	rs6947109	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	56049990	rs66485869	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	56059591	rs10435504	G	C	5828.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:363,306:0.46:669
chr7	56087206	rs75045388	A	T	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-4.413;QD=4.26;ReadPosRankSum=-0.296;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr7	56087215	.	G	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=9.420;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-4.022;QD=6.15;ReadPosRankSum=-1.288;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr7	56087219	.	A	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.825;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=6.884;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-3.849;QD=6.44;ReadPosRankSum=-1.677;SOR=1.551;set=HC	GT:AD:AF:DP	0/1:87,24:0.22:111
chr7	56087232	.	T	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-4.141;QD=7.62;ReadPosRankSum=-1.374;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:107,32:0.23:139
chr7	56087233	.	G	A	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-4.197;QD=8.91;ReadPosRankSum=-1.070;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr7	56087240	.	T	C	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-4.068;QD=9.23;ReadPosRankSum=-2.311;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:129,48:0.27:177
chr7	56087241	.	G	A	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-4.030;QD=8.98;ReadPosRankSum=-2.357;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:132,50:0.27:182
chr7	56087278	rs199535022	C	A	3609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.624;QD=9.70;ReadPosRankSum=0.558;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:270,102:0.27:372
chr7	56087280	rs200789478	G	C	3966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-2.629;QD=10.15;ReadPosRankSum=0.720;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:284,107:0.27:391
chr7	56087283	rs201406771	T	C	4497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.342;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.558;QD=10.92;ReadPosRankSum=0.419;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:296,116:0.28:412
chr7	56087291	rs139106189	AC	A	5501.73	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:328,136:0.29:464
chr7	56087300	rs75395437	C	T	5888.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:349,163:0.32:512
chr7	56087319	rs73343757	T	G	6795.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:434,224:0.34:658
chr7	56087364	rs201644817	GA	TG	9422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.537;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.757;QD=13.56;ReadPosRankSum=-1.149;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:438,257:0.37:695
chr7	56087374	rs200442078	C	T	8929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.868;QD=13.53;ReadPosRankSum=0.332;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:419,241:0.37:660
chr7	56087379	rs201935398	T	C	8466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.872;QD=13.29;ReadPosRankSum=0.226;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:405,232:0.36:637
chr7	56087399	rs79321413	G	A	7702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.589;QD=13.83;ReadPosRankSum=0.520;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:353,204:0.37:557
chr7	56087409	rs74874687	G	A	6662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.598;QD=13.38;ReadPosRankSum=1.125;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:319,179:0.36:498
chr7	56087423	rs79451216	G	A	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:269,148:0.35:417
chr7	56087465	rs77534057	G	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-2.344;QD=9.15;ReadPosRankSum=-0.248;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:87,38:0.30:125
chr7	56087474	rs77874436	A	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.196;QD=11.85;ReadPosRankSum=-2.510;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:59,30:0.34:89
chr7	56088780	rs75497420	G	A	2635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=1555;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.176;QD=1.85;ReadPosRankSum=0.128;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:1149,274:0.19:1423
chr7	56088786	rs202027697	A	T	22275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=1550;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.641;QD=15.65;ReadPosRankSum=2.475;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:828,595:0.42:1423
chr7	56088789	rs199851385	G	A	22343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=1535;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.607;QD=15.84;ReadPosRankSum=3.238;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:812,599:0.42:1411
chr7	56088811	rs78599516	T	C	22600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=1436;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-3.175;QD=16.99;ReadPosRankSum=5.389;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:740,590:0.44:1330
chr7	56088825	rs74445297	T	A	21768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=1298;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-3.394;QD=18.04;ReadPosRankSum=2.886;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:644,563:0.47:1207
chr7	56088902	rs77329757	C	T	4711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-2.505;QD=17.20;ReadPosRankSum=-1.954;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:139,135:0.49:274
chr7	56088907	rs201445503	GC	CT	4505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-2.664;QD=19.68;ReadPosRankSum=-0.720;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:123,106:0.46:229
chr7	56088928	rs200942360	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;MQ=59.22;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr7	56088931	.	G	GA	1228.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr7	56119730	rs3735665	T	A	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=1.088;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:36,45:0.56:81
chr7	56122058	rs6593297	A	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	56126360	rs2230197	T	C	4225.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:211,221:0.51:432
chr7	56129511	rs4927	A	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:175,183:0.51:358
chr7	56136260	rs4245575	C	A	11468.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr7	56142519	rs4948104	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:102,92:0.47:194
chr7	56146595	.	CT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.138;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr7	56149774	rs373707742	C	T	11140.77	.	AC=1;AF=0.500;AN=2;DB;DP=1094;set=Intersection	GT:AD:AF:DP	0/1:535,549:0.51:1084
chr7	56149847	rs17172508	C	T	8871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.370;QD=9.63;ReadPosRankSum=-0.055;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:476,445:0.48:921
chr7	56151489	rs2242508	A	G	14887.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr7	56152063	.	AT	A	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=-0.000;DP=54;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.37;ReadPosRankSum=0.383;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	56171760	rs6593298	A	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr7	56174115	rs10043	A	C	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr7	56174140	rs816407	G	T	11048.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr7	56717637	rs1906630	T	A	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:159,116:0.42:275
chr7	56717788	rs1849659	A	G	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr7	56879403	rs10277636	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	56879502	rs111473965	C	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr7	56879527	rs10274643	A	G	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	56879552	rs10277871	T	C	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	57069669	rs1467279	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.17;QD=27.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	57069910	rs7455704	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	57069935	rs1966122	G	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	57071650	.	G	GAGCAGCAGC	799.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=52.02;MQRankSum=-1.856;QD=66.65;ReadPosRankSum=-2.048;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr7	57071671	rs187876791	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.05;QD=34.32;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	57071725	rs62463099	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.87;QD=26.03;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	57188016	rs78588121	A	G	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:217,205:0.49:422
chr7	57188718	rs62464802	T	C	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:247,252:0.51:499
chr7	57233433	rs79667433	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr7	57233554	rs34820155	G	C	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:120,155:0.56:275
chr7	57233703	rs115630067	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	57245247	rs11763159	A	G	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	57528997	rs10272498	T	C	5614.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:263,276:0.51:539
chr7	57529392	rs13235676	A	C	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:350,293:0.46:643
chr7	63032699	rs139984168	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:68,25:0.27:93
chr7	63033158	.	G	GGAGGAGGAT	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-0.640;QD=3.32;ReadPosRankSum=4.295;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:112,20:0.15:132
chr7	63033167	rs141286287	TGAGGAGGAG	T	1338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.785;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-2.711;QD=10.54;ReadPosRankSum=0.149;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:88,39:0.31:127
chr7	63033229	.	T	TACGGCCCCCGGCGCC	1816.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.693;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=18.025;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-7.345;QD=17.81;ReadPosRankSum=-4.057;SOR=2.327;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr7	63033612	rs117248401	A	G	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-2.106;QD=3.41;ReadPosRankSum=0.394;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:225,81:0.26:306
chr7	63033740	.	G	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.829;MLEAC=1;MLEAF=0.500;MQ=51.86;MQRankSum=-2.369;QD=1.94;ReadPosRankSum=1.901;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr7	63529956	rs4349869	G	A	3640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.608;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:221,194:0.47:415
chr7	63537638	rs34875861	CT	C	1034.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.277;QD=16.69;ReadPosRankSum=0.360;SOR=0.614;set=HC	GT:AD:AF:DP	1/1:4,58:0.94:62
chr7	63537849	rs4717170	G	A	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:242,240:0.50:482
chr7	63673608	rs10252019	C	T	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:209,173:0.45:382
chr7	63673691	rs13233809	A	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr7	63674540	rs4718036	G	C	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:253,170:0.40:423
chr7	63679733	rs10270226	A	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:164,153:0.48:317
chr7	63726645	rs1830035	T	C	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:321,278:0.46:599
chr7	63726678	rs1830036	T	A	5882.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:363,299:0.45:662
chr7	63796822	rs60337982	AT	A	3060.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	63797256	rs2086168	A	C	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	63981563	rs10243954	A	G	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	63986829	rs73128772	G	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	64004252	rs75088143	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr7	64023371	rs6969879	T	C	16192.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:2,611:1.00:613
chr7	64023437	rs6965883	A	G	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	64152353	rs4718101	A	G	5901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.590;QD=8.25;ReadPosRankSum=0.081;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:392,323:0.45:715
chr7	64166642	rs35661712	T	TG	1875.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.28;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	64169019	rs4717205	G	A	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	64169061	rs4717206	G	A	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr7	64254791	rs10949938	G	T	3844.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:227,189:0.45:416
chr7	64254901	rs11983033	T	C	9234.77	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:450,468:0.51:918
chr7	64275284	rs7809431	C	T	17328.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:18,678:0.97:696
chr7	64275470	.	A	AT	1084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=3.139;QD=5.07;ReadPosRankSum=-1.444;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:117,97:0.45:214
chr7	64275548	rs10236928	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	64276089	rs9654821	A	G	14028.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.60;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,548:1.00:548
chr7	64291225	rs6460193	G	T	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	64291244	rs7787287	T	C	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr7	64291267	rs6460194	A	T	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	64291333	rs4483043	T	A,G	8881.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=398;set=Intersection	GT:AF:DP	1/2:0.52,0.48:394
chr7	64291976	rs10949946	G	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:102,114:0.53:216
chr7	64291991	rs4236203	T	A	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	64312707	rs7804955	T	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.553;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	64378806	rs7796966	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:70,88:0.56:158
chr7	64389089	rs2017252	A	C	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:137,135:0.50:272
chr7	64437406	rs4607487	A	G	14278.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr7	64437658	rs114863465	C	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr7	64438403	rs4718175	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	64438667	rs1404453	G	A	15042.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr7	64439938	rs1852016	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr7	64451699	rs4717229	T	C	11236.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.90;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr7	64451699	.	TTGAACTTT	CTGAACTTC,CTGAACTTT	1443	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=2;MMLQ=27;MQ=60.0;NF=44,97;NR=47,89;PP=1443,1305;QD=16.4447019216;SC=GTTAGTAAGGTTGAACTTTCC;SbPval=0.4;Source=Platypus;TC=186;TCF=97;TCR=89;TR=91,186;WE=64451723;WS=64451689;set=Platypus	GT:AF:DP	0/1:0.49:186
chr7	64451707	rs116381104	T	C	3131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.049;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:152,151:0.50:303
chr7	64451963	rs4618579	T	C	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	64452830	rs34639489	C	T	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:214,214:0.50:428
chr7	64453136	rs6460219	G	A	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	64535312	rs71533998	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.80;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	64639804	rs373112654	A	G	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=-1.577;QD=2.81;ReadPosRankSum=0.325;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:717,214:0.23:931
chr7	64639915	rs368760026	AC	A	1631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=20.240;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-1.399;QD=12.75;ReadPosRankSum=-2.559;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:47,81:0.63:128
chr7	64639926	rs80126668	C	G,CG	3117.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.741;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.45;MQRankSum=1.784;QD=24.36;ReadPosRankSum=-1.581;SOR=0.126;set=HC	GT:AD:AF:DP	1/2:18,83,27:0.65,0.21:128
chr7	64863392	rs10265083	C	T	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:216,165:0.43:381
chr7	64864607	rs10239197	G	A	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:98,126:0.56:224
chr7	64864800	rs4122883	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr7	65084152	rs6978207	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	65150824	rs202004878	C	CCG	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.07;QD=39.37;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	65157864	rs2671990	T	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-0.146;QD=3.36;ReadPosRankSum=-1.170;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr7	65159983	rs147104756	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	65220463	rs4718275	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=43.85;MQRankSum=1.652;QD=13.02;ReadPosRankSum=0.452;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	65220697	rs4718276	G	A	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	65426054	.	CA	C	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=2.726;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:90,40:0.31:130
chr7	65541185	rs1183245	C	T	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	65541307	rs1144895	C	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	65551931	rs313830	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	65552230	.	CGTGT	C,CGT	3986.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=10.961;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.353;QD=24.92;ReadPosRankSum=0.625;SOR=1.014;set=HC	GT:AD:AF:DP	1/2:5,49,106:0.31,0.66:160
chr7	65552497	rs313829	A	G	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	65552614	rs313828	T	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	65554352	rs160647	C	T	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	65554385	rs2460432	C	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	65556936	rs1167406	G	C	8159.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	65599246	rs5884583	CT	C	558.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.481;QD=13.30;ReadPosRankSum=-1.657;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr7	65599446	rs6958484	G	A	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	65841981	rs6974355	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	65842544	rs11764	G	C	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:218,215:0.50:433
chr7	66094008	rs35526611	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	66098482	rs3764903	G	A	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	66105589	.	A	AT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.810;QD=1.16;ReadPosRankSum=-0.727;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr7	66147057	rs1882655	T	C	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	66147101	rs2420827	G	A	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-1.805;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:93,81:0.47:174
chr7	66147110	rs3800823	C	A	2493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=0.964;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:94,65:0.41:159
chr7	66147149	rs3800822	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	66147178	rs3800820	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	66147656	rs2003301	G	C	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.55;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	66147697	rs5884599	A	AG	7551.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=33.56;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	66147746	rs2003300	C	G	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	66459256	rs1061695	T	C	5592.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:337,293:0.47:630
chr7	66483180	.	G	T	2707.77	.	AC=1;AF=0.500;AN=2;DP=297;set=Intersection	GT:AD:AF:DP	0/1:140,136:0.49:276
chr7	66489771	.	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.828;QD=2.70;ReadPosRankSum=-0.477;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr7	66785137	rs9443	C	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-3.105;QD=5.03;ReadPosRankSum=-1.360;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:138,63:0.31:201
chr7	69064637	rs3735260	A	G	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	69583231	rs11418386	T	TA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.959;QD=4.02;ReadPosRankSum=-1.228;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	70193932	rs4718987	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	70194005	rs10259549	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr7	70194024	rs4718988	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr7	70229595	rs1983487	T	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	70229685	rs1983488	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr7	70230014	rs116591851	C	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:199,160:0.45:359
chr7	70236446	rs73170214	T	A	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:92,115:0.56:207
chr7	70249868	rs3817575	G	A	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:182,162:0.47:344
chr7	70249908	rs2293504	C	T	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr7	70250874	rs10233246	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr7	70251161	rs115472450	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	70252185	rs2293500	A	G	6205.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:382,330:0.46:712
chr7	70254674	rs941346	G	T	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:165,160:0.49:325
chr7	70256041	rs61523194	T	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,84:0.53:158
chr7	70597675	rs6957446	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	70598059	rs2903458	A	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	70765503	rs7806503	C	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:94,70:0.43:164
chr7	70772565	rs55690472	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=1.402;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	70800407	rs13240200	T	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	70886107	rs11455716	G	GC	3968.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	71036182	rs66840657	C	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	71036473	rs10277319	C	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	71135192	rs2302440	A	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:78,55:0.41:133
chr7	71176900	rs887584	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:113,88:0.44:201
chr7	71176919	rs10256176	C	G	3457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=1.131;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:148,166:0.53:314
chr7	71177177	rs10226321	G	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr7	71253041	rs736145	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	71275586	rs17143997	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	71571436	rs10950296	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	72093957	rs28535321	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:196,117:0.37:313
chr7	72286028	rs2286318	C	T	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr7	72301284	rs138480824	T	C	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:187,167:0.47:354
chr7	72395706	rs148094095	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=0.441;QD=7.32;ReadPosRankSum=0.000;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr7	72396170	.	GCGCCGCGCTCCCCAC	G	2325.73	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:118,100:0.46:218
chr7	72397420	rs116164279	G	A	7589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=887;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.952;QD=8.65;ReadPosRankSum=0.212;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:462,415:0.47:877
chr7	72413423	rs71554686	C	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr7	72413443	rs62463429	G	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:154,68:0.31:222
chr7	72413581	rs71554687	G	A	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=6.085;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-20.076;QD=1.12;ReadPosRankSum=-1.598;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:618,73:0.11:691
chr7	72413593	rs71554688	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.286;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=5.004;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-19.846;QD=0.85;ReadPosRankSum=-1.406;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:585,60:0.09:645
chr7	72416333	rs237934	C	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	72418963	rs7056	T	C	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:170,99:0.37:269
chr7	72419464	rs138398938	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:193,153:0.44:346
chr7	72420142	rs182895453	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-0.316;QD=8.82;ReadPosRankSum=2.162;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:52,42:0.45:94
chr7	72657760	rs372731525	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:277,49:0.15:326
chr7	72657798	rs115068592	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:209,64:0.23:273
chr7	72658179	rs368495322	T	C	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,6:0.16:38
chr7	72658486	rs186912884	G	C	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr7	72664015	.	C	CGG	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.28;MQRankSum=-1.645;QD=7.55;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	72711796	.	C	T	140.03	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=46.68;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	72711816	rs374232589	G	A	171.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.36;QD=34.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	72711867	rs62465076	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.29;QD=28.40;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	72711908	.	A	AGCCCCG	944.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.491;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=22.876;MLEAC=1;MLEAF=0.500;MQ=51.63;MQRankSum=-4.348;QD=13.69;ReadPosRankSum=-1.501;SOR=3.504;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr7	72711986	rs62465077	G	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-3.895;QD=1.92;ReadPosRankSum=-3.582;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr7	72711991	rs62465078	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-5.934;QD=0.56;ReadPosRankSum=-0.697;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:114,11:0.09:125
chr7	72712121	rs62465079	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.07;QD=25.53;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	72714488	rs140759302	T	C	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:63,11:0.15:74
chr7	72717444	rs112136204	C	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:146,168:0.54:314
chr7	72717555	rs2353053	G	A	7183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-1.166;QD=8.96;ReadPosRankSum=-0.806;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:389,413:0.51:802
chr7	72717831	rs62000387	G	A	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:144,124:0.46:268
chr7	72719048	rs34913552	G	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.500;MQ=50.49;MQRankSum=-2.935;QD=13.18;ReadPosRankSum=2.744;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:42,70:0.62:112
chr7	72733070	rs28415300	G	C	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr7	72738350	rs55963844	C	CG	6201.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	72738749	rs28626137	A	G	10855.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	72738762	rs6980258	CA	TG	9624.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	72744143	rs3950375	A	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:103,130:0.56:233
chr7	72750627	rs4717751	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	72750693	rs200269096	GCACAC	G	1317.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr7	72754983	rs150371591	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=-0.858;QD=6.42;ReadPosRankSum=0.039;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	72850178	rs1178947	T	C	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:215,180:0.46:395
chr7	72856676	rs1178978	C	T	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:201,201:0.50:402
chr7	72857049	rs1178977	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr7	72874088	rs799215	C	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr7	72879898	.	G	GA	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.927;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:66,29:0.31:95
chr7	72880525	rs114852722	C	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	72966422	.	CA	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.987;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:137,54:0.28:191
chr7	72966638	rs73137012	T	C	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:287,275:0.49:562
chr7	72992754	rs10225949	G	T	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:182,147:0.45:329
chr7	73008883	.	C	CT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.637;QD=1.39;ReadPosRankSum=0.816;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr7	73020301	rs799157	T	C	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	73038472	rs370239468	AC	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=2.478;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr7	73096993	rs8891	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	73097654	rs1128349	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:215,198:0.48:413
chr7	73112057	rs369894399	TG	T	6775.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	73118033	rs35459363	G	A	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr7	73118398	rs7807316	T	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	73122923	rs2228607	A	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:187,163:0.47:350
chr7	73122977	rs2229854	G	A	6161.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:249,304:0.55:553
chr7	73123529	rs73362402	C	T	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr7	73151220	rs2293484	G	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chr7	73151644	rs6460052	A	G	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:253,183:0.42:436
chr7	73152578	rs367606949	AC	A	2722.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:78,108:0.58:186
chr7	73184435	rs7084	G	C	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:137,164:0.54:301
chr7	73243786	rs4717822	T	G	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:201,248:0.55:449
chr7	73245519	rs8629	T	C	5716.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:297,297:0.50:594
chr7	73249165	rs13246460	T	A	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:253,257:0.50:510
chr7	73249299	rs13232463	G	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:84,61:0.42:145
chr7	73254812	rs13241921	T	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,84:0.41:207
chr7	73254910	rs13242043	T	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr7	73255647	rs4717823	G	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:98,74:0.43:172
chr7	73275396	rs4324825	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	73275501	rs11770024	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr7	73275565	rs11770052	T	A	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:205,173:0.46:378
chr7	73275769	rs11767129	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr7	73279233	rs10675041	C	CAA	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-2.094;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr7	73279361	rs61742124	C	T	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:261,237:0.48:498
chr7	73279482	rs13227841	T	C	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:177,142:0.45:319
chr7	73280020	rs1136647	C	T	5984.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:315,299:0.49:614
chr7	73467650	rs150142298	CTGTGTG	C,CTG	1190.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;set=Intersection	GT:AF:DP	1/2:0.30,0.68:37
chr7	73470782	rs2856728	C	T	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	73472050	rs28763986	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	73479946	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.061;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=5.410;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.111;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:93,30:0.24:123
chr7	73513242	rs34911416	CA	C	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=7.439;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.984;QD=5.34;ReadPosRankSum=0.205;SOR=2.362;set=HC	GT:AD:AF:DP	0/1:34,51:0.60:85
chr7	73530046	rs149618	A	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	73530406	rs10242395	T	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr7	73601866	rs17146089	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:135,91:0.40:226
chr7	73630177	rs74795836	G	A	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.351;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:66,33:0.33:99
chr7	73630184	rs76368404	A	G	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=1.010;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:72,35:0.33:107
chr7	73630421	rs77143764	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr7	73634191	rs113120958	A	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:134,109:0.45:243
chr7	73634371	rs41272156	T	G	2662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=4.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.578;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:130,129:0.50:259
chr7	73634887	rs2023380	A	G	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:96,123:0.56:219
chr7	73636018	rs11544217	A	G	5750.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:386,306:0.44:692
chr7	73636042	rs112556800	C	CGGT	6552.73	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:290,180:0.38:470
chr7	73636045	rs201410958	A	C	6555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=5.226;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.813;QD=14.10;ReadPosRankSum=0.773;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:290,175:0.38:465
chr7	73636048	rs200399943	T	G	6431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=5.225;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.802;QD=14.07;ReadPosRankSum=0.399;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:283,174:0.38:457
chr7	73638035	rs112055519	A	G	5089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.849;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:317,271:0.46:588
chr7	73638839	rs55973656	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr7	73638965	rs41272915	A	G	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:136,128:0.48:264
chr7	73648163	rs3135706	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr7	73649704	rs113947727	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr7	73649825	rs3135698	T	C	1736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.704;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:119,93:0.44:212
chr7	73653245	rs1805390	G	A	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:192,183:0.49:375
chr7	73664115	rs1805391	G	A	4437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.636;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:282,234:0.45:516
chr7	73666835	rs1805393	A	G	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:149,96:0.39:245
chr7	73666853	rs77326053	C	T	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:159,116:0.42:275
chr7	73753271	rs116688438	C	T	9388.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:462,474:0.51:936
chr7	73803644	rs35415684	T	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	73814749	rs2522943	G	C	17178.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr7	73815967	rs17145470	C	A	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:209,152:0.42:361
chr7	73818404	rs2240436	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	73922613	rs2074660	T	C	7371.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:310,358:0.54:668
chr7	73922677	rs10269478	C	G	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr7	73938296	.	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr7	73944185	rs2240357	T	C	6956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.481;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:344,360:0.51:704
chr7	73950636	rs2074667	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr7	73959331	rs2074665	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	73969541	rs2301895	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	73969673	rs114519362	C	T	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:203,196:0.49:399
chr7	73973942	rs138980775	C	G	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.419;QD=9.61;ReadPosRankSum=0.819;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:89,89:0.50:178
chr7	74114847	rs2301907	T	C	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.470;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:67,62:0.48:129
chr7	74152376	rs201879322	T	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-1.298;QD=1.45;ReadPosRankSum=1.029;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:463,101:0.18:564
chr7	74167356	rs116428284	A	T	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.22;MQRankSum=-11.776;QD=11.36;ReadPosRankSum=1.656;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:64,128:0.67:192
chr7	74193668	rs17295741	G	A	3378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=48.51;MQRankSum=-4.805;QD=17.88;ReadPosRankSum=5.321;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:36,153:0.81:189
chr7	74195209	rs373919021	G	C	2522.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.189;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=32.67;MQRankSum=-10.889;QD=21.02;ReadPosRankSum=1.016;SOR=0.516;set=HC	GT:AD:AF:DP	1/1:7,113:0.94:120
chr7	74197598	.	T	A	677.77	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.64;QD=25.10;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	74251390	rs200184967	A	C	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-6.026;QD=4.38;ReadPosRankSum=2.220;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:199,85:0.30:284
chr7	74470190	rs200459061	C	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	74489486	rs6955671	T	C	9015.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr7	74489889	rs10280764	C	T	12465.77	.	AC=1;AF=0.500;AN=2;DB;DP=1230;set=Intersection	GT:AD:AF:DP	0/1:574,629:0.52:1203
chr7	74524986	rs142604065	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.29;QD=23.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	74563411	.	C	T	111.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=27.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	74563431	.	C	G	62.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	74582392	rs199966566	A	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=46.05;MQRankSum=0.432;QD=13.03;ReadPosRankSum=-3.671;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:48,89:0.65:137
chr7	74582468	rs201210150	T	C	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-4.674;QD=1.93;ReadPosRankSum=-0.705;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:163,40:0.20:203
chr7	74582543	.	T	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-4.096;QD=12.38;ReadPosRankSum=0.543;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr7	74608740	.	CT	C	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=44.63;MQRankSum=-7.564;QD=1.33;ReadPosRankSum=1.927;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:199,65:0.25:264
chr7	75039300	rs112848269	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	75044385	rs236649	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	75044431	rs236650	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr7	75044830	rs236651	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.66;QD=28.65;SOR=2.062;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	75045496	rs201842651	AG	A	5215.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.816;MLEAC=2;MLEAF=1.000;MQ=41.23;MQRankSum=-5.455;QD=26.61;ReadPosRankSum=1.357;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:10,186:0.95:196
chr7	75045694	rs7050	C	T	5271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.068;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=47.49;MQRankSum=-7.194;QD=11.66;ReadPosRankSum=-0.675;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:208,244:0.54:452
chr7	75048564	rs71560447	A	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr7	75048750	rs6465926	G	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	75048804	rs365844	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	75051283	rs148157801	G	A	5390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=-20.823;QD=11.25;ReadPosRankSum=0.779;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:328,151:0.32:479
chr7	75051290	rs2429591	C	G	5600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-20.929;QD=11.25;ReadPosRankSum=2.826;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:339,159:0.32:498
chr7	75051311	rs115572784	T	C	5731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.37;MQRankSum=-21.080;QD=11.17;ReadPosRankSum=6.744;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:347,166:0.32:513
chr7	75051368	rs398003	T	C	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=-14.494;QD=5.82;ReadPosRankSum=-0.460;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:181,99:0.35:280
chr7	75051375	rs398016	T	C	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=52.39;MQRankSum=5.931;QD=4.56;ReadPosRankSum=2.900;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:164,71:0.30:235
chr7	75051419	rs201211942	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=-2.197;QD=3.78;ReadPosRankSum=-0.656;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr7	75051439	rs111245070	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=1.347;QD=4.08;ReadPosRankSum=-0.961;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr7	75055097	rs374900785	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-2.163;QD=5.77;ReadPosRankSum=-0.179;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	75071522	.	C	CCGGG	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-7.885;QD=2.95;ReadPosRankSum=2.823;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:120,38:0.24:158
chr7	75071868	.	G	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=0.984;QD=14.08;ReadPosRankSum=2.394;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:18,39:0.68:57
chr7	75145266	rs5884966	TA	T	3925.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	75168562	rs1167835	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr7	75168620	rs139045137	G	A	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:140,145:0.51:285
chr7	75171422	rs1167793	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr7	75171438	rs11773745	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr7	75172270	rs1167794	G	A	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,145:0.51:284
chr7	75174299	rs139593228	A	AT	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=2.050;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:59,38:0.39:97
chr7	75176196	rs1167800	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	75176300	rs1167801	T	C	3361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.167;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:176,175:0.50:351
chr7	75176385	rs1167802	A	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr7	75183394	rs1167806	T	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.113;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:54,48:0.47:102
chr7	75183403	rs1167807	A	G	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.82;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	75185985	rs794368	A	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.050;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	75187621	rs7806452	A	G	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.484;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:71,100:0.58:171
chr7	75190477	rs3757604	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr7	75210659	rs237240	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,66:0.47:141
chr7	75210763	rs237239	T	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=34.85;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	75210763	.	TG	CA,CG	258	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=21;MMLQ=27;MQ=59.15;NF=6,9;NR=14,26;PP=258,245;QD=15.5733937431;SC=GTCTTAGCCTTGTGGGTATTA;SbPval=0.49;Source=Platypus;TC=36;TCF=10;TCR=26;TR=20,35;WE=75210772;WS=75210753;set=Platypus	GT:AF:DP	0/1:0.56:36
chr7	75210764	rs2696199	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.856;QD=11.46;ReadPosRankSum=0.440;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr7	75211414	rs237238	A	G	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:253,273:0.52:526
chr7	75211528	rs237237	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr7	75216202	rs1167787	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr7	75240915	rs7794510	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr7	75399193	rs2302008	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr7	75401418	rs2240478	G	A	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.458;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:83,70:0.46:153
chr7	75508332	.	C	G	878.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr7	75510561	rs7807392	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr7	75511134	rs10255642	A	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:129,127:0.50:256
chr7	75513062	rs42183	A	G	19517.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:2,770:1.00:772
chr7	75513216	rs4728517	T	A	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.682;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr7	75513220	rs192837060	T	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.810;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr7	75544455	rs3823884	A	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	75609973	rs72555506	C	T	6145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=1.153;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:434,321:0.43:755
chr7	75610763	rs2286819	G	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:79,121:0.60:200
chr7	75612770	rs13223707	C	G	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr7	75612783	rs13240147	G	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:71,97:0.58:168
chr7	75612803	rs41301394	C	T	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:120,152:0.56:272
chr7	75614029	rs4732515	T	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr7	75614082	rs4732516	C	G	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:264,325:0.55:589
chr7	75614777	rs2302429	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr7	75614863	rs2302431	TG	CT	4719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=-0.686;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:135,125:0.48:260
chr7	75614953	rs2228104	T	C	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:250,288:0.54:538
chr7	75615006	rs1057868	C	T	7781.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:308,383:0.55:691
chr7	75616817	rs201142190	GGACA	G	14988.73	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	75618380	rs112021685	C	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	75618427	rs186407955	T	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.63;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	75618434	rs372247602	CT	GG	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	75621661	rs2286826	G	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	75621827	rs4732519	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	75621979	rs6467956	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	75628461	rs4728538	A	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	75629778	rs3801472	T	C	10194.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr7	75630183	rs2302434	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,62:0.57:108
chr7	75630274	rs8565	T	C	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:227,177:0.44:404
chr7	75633209	rs2058389	T	C	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	75633324	rs77772802	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr7	75643313	rs7798794	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	75651085	rs6467975	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr7	75657850	rs11983987	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	75659547	rs6957698	C	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr7	75677430	rs10231092	C	G	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr7	75677504	rs6720	C	T	7340.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	75677578	rs2286828	G	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr7	75692927	rs1637037	C	T	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	75693009	rs1637039	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	75693963	rs2286830	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	75694079	rs11972240	T	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	75806299	rs12538908	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	75864463	rs6966223	T	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	75864648	rs3823887	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.322;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:37,48:0.56:85
chr7	75864691	rs6962566	A	T	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=1.195;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	75877354	rs1859795	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	75889151	rs150272766	G	GC	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	75889184	rs6950229	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr7	75894946	rs6465068	G	A	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	75896466	rs6955911	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	75912536	rs3839766	TG	T	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	75913013	rs77220605	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr7	75914934	rs75544239	G	GC	6186.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	75959188	rs2072435	G	A	7687.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:331,374:0.53:705
chr7	76023029	rs10261314	T	C	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.069;QD=9.18;ReadPosRankSum=-0.465;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:155,134:0.46:289
chr7	76023088	rs140509712	C	CG	10155.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	76023131	rs35508921	A	AG	18635.73	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.23;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr7	76027235	rs6963070	T	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr7	76027901	rs113567515	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	76027912	rs112701136	A	G	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr7	76030356	rs76436061	G	A	6795.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:352,343:0.49:695
chr7	76058767	rs6465128	G	T	4987.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:231,247:0.52:478
chr7	76062441	.	T	TTTGGTTTTGG,TTTGGTTTTGGTTGGTTTTGG	2402.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.84;QD=53.39;SOR=1.880;set=HC	GT:AD:AF:DP	1/2:0,22,23:0.49,0.51:45
chr7	76062770	rs3762031	C	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr7	76069811	rs2906999	T	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:227,130:0.36:357
chr7	76111756	.	A	C	798.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr7	76112060	rs1638074	C	T	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:315,221:0.41:536
chr7	76112183	.	C	T	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DP=875;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-26.554;QD=1.64;ReadPosRankSum=-7.013;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:712,159:0.18:871
chr7	76112249	rs147779783	A	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;ClippingRankSum=0.000;DB;DP=1453;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-23.452;QD=0.53;ReadPosRankSum=7.079;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:1228,206:0.14:1434
chr7	76112487	rs1638073	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr7	76126647	rs375794680	C	T	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.99;MQRankSum=-5.011;QD=1.07;ReadPosRankSum=-0.376;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:542,108:0.17:650
chr7	76130742	.	G	GCCGTTTCAC	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=49.04;MQRankSum=-1.945;QD=2.12;ReadPosRankSum=0.407;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr7	76131586	rs2690683	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr7	76131645	rs6979487	A	G	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=33.79;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	76131645	.	ACAGCG	GCAGCA,GCAGCG	1105	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=25;MMLQ=24;MQ=54.47;NF=28,71;NR=22,61;PP=677,1105;QD=14.6093574972;SC=GAAGCTGTCCACAGCGTCTGG;SbPval=0.63;Source=Platypus;TC=132;TCF=71;TCR=61;TR=50,132;WE=76131658;WS=76131635;set=Platypus	GT:AF:DP	0/1:0.38:132
chr7	76131650	rs6958774	G	A	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-3.004;QD=7.15;ReadPosRankSum=-0.621;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:140,89:0.39:229
chr7	76131695	rs4728775	A	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:169,110:0.39:279
chr7	76131812	rs6963784	C	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr7	76132898	rs17855260	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:128,48:0.27:176
chr7	76132962	rs2690526	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr7	76135134	rs7398	G	A	4188.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:194,210:0.52:404
chr7	76140186	rs12666503	T	C	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=52.53;MQRankSum=0.107;QD=3.43;ReadPosRankSum=1.198;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:173,57:0.25:230
chr7	76140449	rs145740550	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.07;QD=24.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	76141110	rs188470930	A	T	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.296;QD=10.33;ReadPosRankSum=-0.266;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:107,48:0.31:155
chr7	76141113	rs193046329	C	T	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=0.272;QD=10.90;ReadPosRankSum=0.099;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:102,45:0.31:147
chr7	76141300	rs138814406	T	TC	61.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76142329	rs115931779	G	A	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:309,138:0.31:447
chr7	76142536	rs2286988	G	A	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:437,223:0.34:660
chr7	76144229	rs2004545	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.962;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.461;QD=5.82;ReadPosRankSum=-0.342;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr7	76144455	rs1799125	A	C	45914.77	.	AC=2;AF=1.00;AN=2;DB;DP=1795;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1764:1.00:1764
chr7	76144483	rs1636632	A	G	7060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=1309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.780;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:878,419:0.32:1297
chr7	76144560	rs1799126	T	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	76239480	rs200882024	C	A	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-7.458;QD=5.93;ReadPosRankSum=1.014;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:120,65:0.35:185
chr7	76239503	rs140446540	G	GC	2118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=48.13;MQRankSum=-7.208;QD=6.77;ReadPosRankSum=2.265;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:217,96:0.31:313
chr7	76239703	rs150952334	T	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr7	76240677	rs1799211	T	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	76240727	rs148426627	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr7	76240762	rs73705106	A	G	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:190,74:0.28:264
chr7	76240773	rs73705107	T	C	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:227,94:0.29:321
chr7	76240785	rs71819724	CA	C	3791.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:255,124:0.33:379
chr7	76240877	rs73365247	A	T	4104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=4.668;QD=6.23;ReadPosRankSum=-0.495;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:421,238:0.36:659
chr7	76240888	rs1134609	A	G	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-13.481;QD=2.52;ReadPosRankSum=-0.160;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:516,137:0.21:653
chr7	76241068	rs187692176	C	T	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-2.665;QD=9.90;ReadPosRankSum=0.801;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:145,146:0.50:291
chr7	76241144	rs201066556	C	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	76255032	rs2527936	A	G	7856.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:181,362:0.67:543
chr7	76255452	rs62476699	G	A	8563.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:226,404:0.64:630
chr7	76255491	rs71535586	C	T	3295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=-5.459;QD=5.65;ReadPosRankSum=0.165;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:386,197:0.34:583
chr7	76256104	.	G	GGGAGGGCGGTGT	1480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-2.785;QD=11.85;ReadPosRankSum=2.690;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:85,40:0.32:125
chr7	76256256	.	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=51.78;MQRankSum=-0.298;QD=9.93;ReadPosRankSum=-0.349;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	76256540	.	T	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-1.076;QD=14.19;ReadPosRankSum=-1.726;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr7	76256549	.	C	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-1.048;QD=15.55;ReadPosRankSum=-0.639;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	76256578	.	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=0.940;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	76265825	rs202244494	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=47.76;MQRankSum=-4.240;QD=2.78;ReadPosRankSum=0.698;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr7	76607938	rs56083327	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	76608143	rs2245368	C	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr7	76610299	rs62473743	A	G	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.43;QD=27.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	76610346	rs71552449	C	T	3262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.931;MLEAC=1;MLEAF=0.500;MQ=44.96;MQRankSum=-2.590;QD=15.46;ReadPosRankSum=-0.100;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:79,132:0.63:211
chr7	76610362	rs147768955	C	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.765;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-4.807;QD=3.81;ReadPosRankSum=2.018;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:177,53:0.23:230
chr7	76610407	rs62473744	A	G	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	76610621	rs6956966	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.04;QD=25.98;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	76619795	rs149365700	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	76632736	rs3748126	C	G	9252.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr7	76633640	rs79277119	C	A	1783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.18;MQRankSum=-0.539;QD=13.41;ReadPosRankSum=-0.442;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,90:0.68:133
chr7	76634033	rs1861028	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr7	76634077	rs62474183	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=51.88;MQRankSum=-1.765;QD=1.15;ReadPosRankSum=-2.297;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr7	76634269	rs77501390	G	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-1.999;QD=10.47;ReadPosRankSum=0.803;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	76635003	rs76696965	A	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;QD=44.26;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	76635006	rs200111237	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;QD=44.26;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	76635139	rs62474189	CG	TA	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.98;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	76739215	rs199890171	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:109,27:0.20:136
chr7	76739455	rs10275215	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.71;MQRankSum=0.275;QD=9.13;ReadPosRankSum=-0.893;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	76739462	rs6962677	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.31;MQRankSum=0.411;QD=13.12;ReadPosRankSum=0.116;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	76742649	rs142960161	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.70;QD=26.31;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	76748903	rs139039802	AACTTCTAC	A	4759.73	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:200,129:0.39:329
chr7	76748943	.	CCTA	C	1665	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=1;MGOF=68;MMLQ=27;MQ=49.3;NF=5;NR=38;PP=1665;QD=39.9192947582;SC=GATATCTAAACCTAGAAGTAA;SbPval=0.36;Source=Platypus;TC=88;TCF=8;TCR=80;TR=43;WE=76748953;WS=76748933;set=Platypus	GT:AD:AF:DP	0/1:45,43:0.49:88
chr7	76751357	rs3095481	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr7	76796995	rs148896292	A	T	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.500;MQ=50.47;MQRankSum=0.602;QD=8.39;ReadPosRankSum=1.546;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:118,93:0.44:211
chr7	76829000	rs3093274	A	G	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:142,94:0.40:236
chr7	76870956	rs368262623	C	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:153,163:0.52:316
chr7	76883685	rs3114318	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	76883717	rs2056709	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	76889256	.	AGTGTGTGTGT	A,AGT	135	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=18;MQ=57.21;NF=0,0;NR=5,5;PP=123,135;QD=25.2;SC=AAATAAGGCAAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5,5;WE=76889273;WS=76889246;set=Platypus	GT:AF:DP	0/1:0.83:6
chr7	76889354	rs17853516	G	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-1.027;QD=10.43;ReadPosRankSum=1.918;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	76908199	rs3828947	A	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr7	76908566	rs72142258	ATGAGACCCTG	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.163;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr7	76911827	rs11769500	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr7	76922575	rs113826533	GCAA	G	1720.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr7	76922581	rs55803623	C	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.62;ReadPosRankSum=0.345;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:33,44:0.57:77
chr7	76922581	.	CA	GT	1501	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=3;MGOF=15;MMLQ=24;MQ=60.0;NF=6;NR=15;PP=1501;QD=74.0222797553;SC=TCAGGCAACCCACAGTTATCC;SbPval=0.52;Source=Platypus;TC=48;TCF=13;TCR=35;TR=21;WE=76922590;WS=76922565;set=Platypus	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	76922582	rs59657581	A	T	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.00;ReadPosRankSum=0.514;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:33,43:0.57:76
chr7	76940613	rs1139802	A	G	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr7	76941547	rs35791980	C	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr7	76941549	rs148017002	A	AAT	2205.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,59:0.48:123
chr7	76958730	rs10274222	A	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	76959731	rs3750044	G	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:112,90:0.45:202
chr7	76959784	rs3750045	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr7	76984572	rs2037753	G	A	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:113,111:0.50:224
chr7	76984752	rs35161141	CA	C	825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.439;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.409;QD=6.21;ReadPosRankSum=1.444;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:64,69:0.52:133
chr7	76990372	rs6950070	C	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	77006092	.	CAAAAAA	C	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=1.141;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	77006717	.	CAA	C,CAAA	1156.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.456;SOR=0.957;set=HC	GT:AD:AF:DP	1/2:17,59,21:0.61,0.22:97
chr7	77010580	rs76371639	G	GA	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.027;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:82,44:0.35:126
chr7	77010682	rs146257641	AAAAC	A	1421.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr7	77033937	rs10238020	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.534;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr7	77035392	rs6949654	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	77221481	rs11394786	A	AT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.305;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:55,34:0.38:89
chr7	77247821	rs9640663	G	A	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr7	77256713	rs3750050	A	G	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:262,303:0.54:565
chr7	77261820	rs12666778	T	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	77326410	rs3750128	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	77365770	rs3764824	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	77397906	rs10538970	ATAT	A	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	77402746	rs10953349	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	77407556	rs11970824	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr7	77423574	rs7953	G	A	5509.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:257,277:0.52:534
chr7	77523035	rs3779352	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	77523521	rs10267180	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	77531113	rs78163487	T	C	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:125,157:0.56:282
chr7	77549906	rs12234571	T	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	77552127	rs848486	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	77567265	rs34381093	C	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	77584159	rs59882937	A	AT	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.150;QD=6.20;ReadPosRankSum=0.035;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr7	77648671	rs13438302	G	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	77648731	rs2960452	C	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	77708131	rs73136595	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.65;ReadPosRankSum=-1.945;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	77756580	rs2074641	T	C	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	77756724	rs7812015	C	T	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	77756815	rs9656109	G	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	77756849	rs2074642	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	77764591	rs767682	C	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	78118982	rs1548868	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	78119109	rs3735442	C	T	4115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.151;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:278,219:0.44:497
chr7	78119199	rs1990577	A	C	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.691;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:119,99:0.45:218
chr7	78119221	rs3086374	G	GA,GAA	1881.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.38;ReadPosRankSum=-1.273;SOR=0.570;set=HC	GT:AD:AF:DP	1/2:5,46,37:0.52,0.42:88
chr7	78130801	rs10641091	C	CT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.236;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr7	78256342	rs38116	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,82:0.60:137
chr7	78256643	rs38117	G	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	79828450	rs57711391	CT	C	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.045;QD=10.10;ReadPosRankSum=-0.627;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr7	79828573	rs6970347	A	G	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:174,123:0.41:297
chr7	79840212	rs3801356	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	79840339	rs12721454	C	T	6324.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:322,319:0.50:641
chr7	79841954	rs10238438	A	G	37.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.45;ReadPosRankSum=0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr7	80108116	rs6467199	A	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:77,99:0.56:176
chr7	80123999	rs6975345	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	80124051	rs11382818	A	AT	229.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=20.88;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	80290369	rs3211892	A	G	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:171,142:0.45:313
chr7	80300449	rs3211938	T	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:104,101:0.49:205
chr7	80387766	rs1058425	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:102,90:0.47:192
chr7	80394449	rs10085732	T	G	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:219,208:0.49:427
chr7	80456841	rs4461841	C	T	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	80804928	rs1509912	G	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr7	80805175	rs1509911	T	A	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.338;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:75,68:0.48:143
chr7	80805263	rs11972689	C	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:144,137:0.49:281
chr7	80805381	rs11976314	A	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:82,95:0.54:177
chr7	80805463	rs182647587	A	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr7	80817269	rs327695	T	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	81339304	rs2074725	A	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr7	81346685	rs1800793	T	C	5565.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:264,286:0.52:550
chr7	81350208	rs12536657	A	G	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	81350223	rs10272030	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	81355066	rs2887069	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	81359116	rs5745686	CA	C	2230.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=21.66;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	81366210	.	G	GGTGTGTGTGT,GGTGTGTGTGTGT	1400.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=80;set=Intersection	GT:AF:DP	1/2:0.42,0.58:33
chr7	81372156	rs5745676	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	81372452	rs2214826	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	81374500	rs4732406	G	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	81381326	rs5745646	C	T	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	81591114	rs72063149	GTAATGATTATAACAGTATATACAATTTCT	G	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.89;ReadPosRankSum=-1.248;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	81598291	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.306;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr7	81600197	rs37067	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.46;ReadPosRankSum=0.967;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	81613741	rs113118147	G	T	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:277,225:0.45:502
chr7	81626356	rs6944326	G	A	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:127,121:0.49:248
chr7	81634822	rs71885491	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=9.121;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.121;QD=1.52;ReadPosRankSum=0.137;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr7	81641570	rs4019047	G	GAAAA	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=17.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=2.103;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:61,41:0.40:102
chr7	81642949	rs37136	C	T	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	81695712	rs138927518	T	C	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-2.345;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr7	81695842	.	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.049;QD=5.72;ReadPosRankSum=-1.872;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr7	81714063	rs148573351	G	A	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:172,198:0.54:370
chr7	81746307	.	TA	T	6416.73	.	AC=1;AF=0.500;AN=2;DP=344;set=Intersection	GT:AD:AF:DP	0/1:177,165:0.48:342
chr7	81746310	rs201341755	G	T	6425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=2.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=2.504;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:184,168:0.48:352
chr7	81964578	rs5885290	G	GA	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr7	82455997	rs73383960	T	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr7	82497283	rs114274006	T	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr7	82497343	rs4628206	T	A	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	82508939	rs7801161	G	A	67.41	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	82508991	rs7802315	C	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	82531904	rs148901157	GCAAAA	G	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	82544987	rs17156844	A	G	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:141,138:0.49:279
chr7	82580813	rs76988622	T	C	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-2.261;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:72,85:0.54:157
chr7	82581488	rs10630259	T	TTCA	22706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.111;QD=44.44;ReadPosRankSum=2.287;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:2,509:1.00:511
chr7	82582258	rs10261848	T	G	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,90:0.44:206
chr7	82582897	rs73385988	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:144,109:0.43:253
chr7	82583280	rs17148149	C	T	4916.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:265,249:0.48:514
chr7	82583388	rs10487647	A	G	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:219,251:0.53:470
chr7	82595324	rs9969358	C	T	6512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.399;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:288,329:0.53:617
chr7	82595742	rs28680905	T	C	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:131,186:0.59:317
chr7	82595834	rs6963292	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr7	82763534	rs149498958	A	AAT,AATAT	337.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/2:0.43,0.43:14
chr7	82764425	rs2877	C	G	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:243,263:0.52:506
chr7	82764924	rs138200846	C	T	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=1.123;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:105,103:0.50:208
chr7	82784017	rs6951239	G	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr7	82784456	rs6972461	A	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.762;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.369;QD=8.88;ReadPosRankSum=1.593;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chr7	82785719	rs59705796	TA	T	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.124;QD=6.60;ReadPosRankSum=0.203;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr7	83016414	rs28665675	G	A	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	83021799	rs375518443	TAAAA	T,TA	3137.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;QD=29.32;SOR=1.310;set=HC	GT:AD:AF:DP	1/2:4,40,63:0.37,0.59:107
chr7	83023587	.	TAC	T	9209.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=2.114;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.275;QD=23.80;ReadPosRankSum=1.763;SOR=0.447;set=HC	GT:AD:AF:DP	1/1:3,384:0.99:387
chr7	83031907	rs2709930	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	83095955	rs7806439	A	G	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.354;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,64:0.50:128
chr7	83119676	rs73707854	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	83277699	rs372307036	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.425;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.462;QD=1.08;ReadPosRankSum=-1.305;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr7	83590852	rs797821	T	C	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:264,285:0.52:549
chr7	83606353	rs35361892	T	TGA	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	83606518	rs701320	G	A	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	83631376	rs3735513	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:87,117:0.57:204
chr7	83631390	rs10234961	C	G	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:69,103:0.60:172
chr7	83631414	rs10250165	A	T	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr7	83631449	rs139150410	CAAAG	C	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr7	83634713	rs7804122	A	G	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:255,197:0.44:452
chr7	83643681	rs2272222	A	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.029;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr7	83643687	rs2272221	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.246;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr7	83739762	rs1990044	T	C	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:140,117:0.46:257
chr7	83740015	rs1990045	T	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,72:0.58:125
chr7	83764309	rs17241389	C	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,77:0.59:131
chr7	84628989	rs7800072	T	G	6685.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:363,336:0.48:699
chr7	84644346	rs6468008	C	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	84647477	rs7780132	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.234;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	84679978	rs73377853	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr7	84684961	.	CATATATATATAT	CATATATAT,C	170	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=22;MMLQ=24;MQ=60.0;NF=1,1;NR=2,2;PP=170,58;QD=57.6666666667;SC=TTTTCATATACATATATATAT;SbPval=0.42;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3,3;WE=84684980;WS=84684951;set=Platypus	GT:AF:DP	0/1:0.50:6
chr7	84685017	rs57323073	T	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-2.368;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr7	84685120	rs34801275	A	G	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.035;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,64:0.69:93
chr7	84697431	rs73377875	A	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr7	86274196	rs274623	T	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	86479694	rs76035289	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,61:0.63:97
chr7	86509704	rs78364029	T	C	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr7	86536849	rs10547506	CA	C	41.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.431;QD=4.64;ReadPosRankSum=0.549;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr7	86539302	rs34412146	G	C	4454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.659;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:210,221:0.51:431
chr7	86570822	rs113764204	G	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,29:0.30:97
chr7	86571235	rs2373361	C	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr7	86574188	rs17161115	T	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:85,77:0.48:162
chr7	86577346	rs1557665	A	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	86594379	rs6976741	G	A	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	86594423	rs6976877	G	A	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	86781423	rs2286267	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr7	86795947	rs3058402	TAG	T	3712.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:118,98:0.45:216
chr7	86800351	rs3747807	A	G	12703.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr7	86820459	rs1558050	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	86828511	.	A	G	312.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr7	86978347	rs802037	C	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	86983715	rs7808249	A	G	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr7	86986632	rs802025	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr7	86988670	rs11384079	A	AT	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	86991034	rs6971676	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr7	86998842	rs6966140	G	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-1.379;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:89,71:0.44:160
chr7	86998936	rs35374737	AT	A	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	87005287	rs59190666	C	CT	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr7	87006567	rs802042	G	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	87011349	rs31630	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	87021023	rs7785206	G	C	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:105,139:0.57:244
chr7	87022024	rs31644	G	C	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	87031690	rs45549641	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr7	87032613	rs31653	A	G	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	87049345	rs8187801	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:170,189:0.53:359
chr7	87053150	rs31667	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	87053206	rs31668	G	A	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	87056260	rs10647775	A	AGTGTGT	786.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.280;QD=23.84;ReadPosRankSum=-1.065;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr7	87069758	rs31675	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	87074419	rs4148826	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	87076587	rs1014283	C	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	87104791	rs8187785	A	G	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:179,165:0.48:344
chr7	87133851	rs10244116	AT	GC	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr7	87135480	rs28401819	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	87138511	rs2235048	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	87138645	rs1045642	A	G	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	87144816	rs7779562	G	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr7	87160618	rs2032582	A	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	87168749	rs4728699	C	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	87174066	rs2235046	T	C	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:95,104:0.52:199
chr7	87178727	rs2235012	C	G	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:193,177:0.48:370
chr7	87179601	rs1128503	A	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:171,134:0.44:305
chr7	87179616	rs2032586	C	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:128,102:0.44:230
chr7	87180198	rs10276036	C	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-2.137;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:78,34:0.30:112
chr7	87192731	rs11975994	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-0.596;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr7	87193602	rs187476561	A	G	4380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.119;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:212,224:0.51:436
chr7	87215114	rs1211152	A	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	87229501	rs2214102	T	C	6836.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	87506001	rs73393827	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr7	87526550	rs11422356	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.383;QD=3.87;ReadPosRankSum=-0.949;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	87564497	rs2279542	C	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	87594188	rs1637500	T	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr7	87704799	rs3085476	G	GAGAA	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr7	87737592	rs34957515	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:82,96:0.54:178
chr7	87744034	rs138682284	T	TA	2170.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr7	87744037	rs34182051	C	T	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr7	87745903	rs2301998	A	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr7	87754915	rs17255978	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,67:0.59:114
chr7	87760727	rs373497370	A	G	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr7	87774924	rs2888581	A	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	87840263	rs6964163	T	C	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	87913361	rs1981529	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	88389420	rs1858848	A	G	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:326,224:0.41:550
chr7	88423414	rs3843538	C	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	88424115	rs2373396	C	G	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.574;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:106,104:0.50:210
chr7	88424291	rs4363132	C	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr7	88424365	rs35996371	CAA	C,CAAA	268.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	1/2:0.54,0.46:13
chr7	88847450	rs199973381	TA	T	677.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=5.812;QD=13.29;ReadPosRankSum=-0.066;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr7	88847451	rs4140973	A	T	492.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=-5.790;QD=9.66;ReadPosRankSum=0.057;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	88847453	rs4140974	G	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.74;MQRankSum=6.387;QD=11.64;ReadPosRankSum=1.337;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr7	89783895	rs7799132	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr7	89792250	rs39286	A	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	89797144	rs259136	G	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	89854446	rs194520	T	G	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:202,203:0.50:405
chr7	89856608	rs110360	C	T	11138.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:1,433:1.00:434
chr7	89861832	rs194524	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr7	89861890	rs194525	G	T	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	89861942	rs194526	C	T	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	89866428	rs17866173	C	T	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-0.120;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr7	89866432	rs17869617	A	G	1619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.377;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=-0.438;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	89867369	rs2013992	C	G	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:239,199:0.45:438
chr7	89867446	rs35403811	T	TCTG	3214.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:130,156:0.55:286
chr7	89874774	rs17865323	C	T	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,103:0.47:219
chr7	89897751	rs17869450	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=1.848;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr7	89901039	rs10280053	A	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	89903356	rs17866223	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr7	89912301	rs1029365	G	A	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.210;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:145,152:0.51:297
chr7	89927191	rs6465256	T	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=24.86;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	89929110	.	C	CT	30	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=11;HapScore=2;MGOF=10;MMLQ=26;MQ=60.0;NF=2;NR=0;PP=30;QD=21.0;SC=GTGTTTCTCTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=89929118;WS=89929109;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	89933957	rs71961054	GTAGATAGA	G,GTAGATAGATAGA	705.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.53,0.47:19
chr7	89937027	rs35441907	CA	C	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.341;QD=7.50;ReadPosRankSum=0.875;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr7	89938588	rs7803620	C	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:80,57:0.42:137
chr7	89938680	rs1134956	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr7	89969831	rs42637	A	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	89969878	rs2285399	A	G	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:81,94:0.54:175
chr7	89971556	rs1557650	A	C	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr7	89983808	rs42663	T	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	89984409	rs42664	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.650;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	90014111	rs9886362	G	T	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	90225928	rs7782773	T	C	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr7	90355815	rs150323625	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr7	90356175	rs10240049	T	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	90377213	.	C	CT	32	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.9999;HP=18;HapScore=2;MGOF=6;MMLQ=25;MQ=60.0;NF=0;NR=3;PP=32;QD=11.6666666667;SC=TCACGGTATCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=90377221;WS=90377203;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	90675307	rs115520440	C	T	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:159,103:0.39:262
chr7	90742137	rs376151415	GGT	G	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.718;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr7	90742168	rs56973703	G	GGAGA	629.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr7	90747315	rs803167	A	T	777.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.590;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.736;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:4,46:0.92:50
chr7	90894102	rs2232158	C	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	90894385	rs142085794	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.217;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr7	90895944	rs2232161	C	T	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:308,248:0.45:556
chr7	91503228	rs10266424	C	T	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:264,203:0.43:467
chr7	91509232	rs12672603	G	A	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:216,198:0.48:414
chr7	91570290	rs4727267	G	C	4665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.552;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:225,229:0.50:454
chr7	91599825	rs2188155	A	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.281;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:66,74:0.53:140
chr7	91603004	rs10264979	G	A	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=2.181;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:36,42:0.54:78
chr7	91630620	rs6964587	G	T	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:207,207:0.50:414
chr7	91632306	rs1989779	C	T	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	91641928	rs13245393	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr7	91645265	rs10263309	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=-1.309;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	91652178	rs10644111	A	AAAC	1294.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr7	91659150	rs17164315	C	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=1.721;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,41:0.48:86
chr7	91667692	rs2285333	T	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	91671853	rs926192	C	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.89;ReadPosRankSum=-0.160;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	91674302	rs9785013	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr7	91687351	rs1544377	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	91691601	rs10236397	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr7	91700120	rs34613656	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-0.175;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	91706381	rs200199046	T	TTTA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.555;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	91707197	rs733957	C	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr7	91711791	rs2079082	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr7	91713016	rs34688691	TA	T	718.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-0.999;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr7	91713018	rs114399745	A	T	176.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.986;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr7	91713972	rs10228334	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr7	91714092	.	AT	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.648;QD=1.31;ReadPosRankSum=1.508;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr7	91714911	rs1063242	C	T	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	91726927	rs1063243	A	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.672;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	91727385	rs6946356	G	A	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:139,135:0.49:274
chr7	91736794	rs7785971	T	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr7	91743150	rs7797834	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr7	91752690	rs2269727	C	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:202,178:0.47:380
chr7	91758385	rs28495975	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.472;QD=9.09;ReadPosRankSum=1.211;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:72,66:0.48:138
chr7	91758422	rs4729021	C	A	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.46;ReadPosRankSum=0.341;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr7	91761050	.	G	GTT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.366;QD=13.96;ReadPosRankSum=-0.000;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	91761305	rs66673218	CA	C	654.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	91779242	rs1978061	G	A	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:249,200:0.45:449
chr7	91779971	rs6465353	T	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr7	91793446	rs10271800	G	A	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-1.506;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:50,49:0.49:99
chr7	91863700	rs2027950	G	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	92027187	rs38793	A	G	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	92028039	rs38794	C	A	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:142,140:0.50:282
chr7	92085997	.	C	CA	345.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr7	92118558	rs189902683	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr7	92129161	rs5885806	CA	C	5602.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:21,317:0.94:338
chr7	92131289	rs10278857	G	T	11086.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr7	92135802	rs6465359	T	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	92147584	rs38809	C	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	92164450	rs74979499	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	92166146	rs377641940	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.198;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr7	92300587	rs2301556	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-1.267;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	92734451	rs6965201	A	G	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.679;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:58,51:0.47:109
chr7	92760431	rs116965992	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr7	92760502	rs4268	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	92764489	rs10488532	C	T	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:214,194:0.48:408
chr7	92764982	rs1133906	C	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:103,96:0.48:199
chr7	92837791	rs73218062	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	92855639	.	A	C	1551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.035;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:69,84:0.55:153
chr7	92875594	rs373372521	AAC	A	46.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr7	92886812	rs722263	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	92887420	rs150299371	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr7	92900378	rs183741315	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	92900512	.	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.002;QD=2.76;ReadPosRankSum=1.938;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	92901918	rs185400541	A	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr7	92926605	rs17710854	C	T	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr7	92970847	rs2106432	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:98,68:0.41:166
chr7	92985252	rs2374639	T	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	92987445	rs2285505	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	93055753	rs1801197	A	G	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:211,179:0.46:390
chr7	93063398	rs2072083	G	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	93063701	rs200558502	G	GAA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.27;ReadPosRankSum=0.508;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	93067334	rs10713823	TA	T	2119.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.55;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	93070811	rs2106735	C	T	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:92,136:0.60:228
chr7	93070870	rs5885829	GA	G	2550.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:11,140:0.93:151
chr7	93073147	rs2074123	C	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	93091238	rs1108233	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.712;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	93091485	rs3802052	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-0.641;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	93091488	rs3802051	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-1.201;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	93098135	rs139734304	T	TAAACAAACAAAC	2374.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr7	93107093	rs2074120	A	C	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	93116138	rs9691220	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	93116299	rs2301680	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr7	93116391	rs3214144	A	AT	70.92	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr7	93125110	rs17165491	T	C	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:133,139:0.51:272
chr7	93346095	rs2027984	C	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	93520071	rs10234713	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	93551558	rs10225791	T	G	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.325;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:91,73:0.45:164
chr7	93555311	rs180233	A	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	93629242	rs11973524	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr7	94027682	rs143689469	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	94030899	rs1800222	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	94038078	rs373527410	T	G	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:156,159:0.50:315
chr7	94038934	rs42518	C	T	9333.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	94039032	rs42519	C	T	9794.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr7	94039900	rs42520	C	T	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94040133	rs389328	T	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	94040345	.	G	GT	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.829;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:119,49:0.29:168
chr7	94043239	rs42524	C	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	94043493	rs2301643	G	A	6623.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:271,333:0.55:604
chr7	94044668	rs41317159	C	T	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	94047677	rs42527	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	94047913	rs68023599	TA	T	842.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr7	94056244	rs413826	C	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	94056251	rs199900944	GAA	G	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	94058395	rs6465412	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	94058410	rs11374490	C	CT	541.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=0.000;QD=21.66;ReadPosRankSum=0.260;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr7	94058420	rs34888194	C	CT	223.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.974;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr7	94157585	rs57770781	CT	C	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,41:0.93:44
chr7	94164838	rs17325	G	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr7	94176623	rs201262727	C	CT	51.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	94176627	rs6958243	G	C	225.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	94178761	rs7801436	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	94181809	rs76278222	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	94182373	rs6465417	A	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr7	94182458	.	C	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.041;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr7	94217190	rs7783198	A	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	94227276	rs10247562	T	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	94227509	rs10232398	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	94247971	rs6465421	C	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	94257449	.	TACACAC	T,TACACACAC	7493.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=255;set=Intersection	GT:AF:DP	1/2:0.83,0.11:236
chr7	94257535	rs140913016	C	G	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:133,236:0.64:369
chr7	94273994	rs35016618	A	G	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:202,186:0.48:388
chr7	94539540	rs113253337	T	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:149,137:0.48:286
chr7	94740524	rs11379075	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.680;QD=1.27;ReadPosRankSum=-1.246;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr7	94879225	rs12690919	A	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	94897801	rs854522	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr7	94898811	rs854524	G	A	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	94903420	rs2240026	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:92,111:0.55:203
chr7	94915492	rs368851234	A	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr7	94931712	rs3917564	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.05;ReadPosRankSum=-0.257;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	94937446	rs662	T	C	19056.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,758:1.00:758
chr7	94941038	rs1157745	G	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	94944923	rs854556	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr7	94946084	rs854560	A	T	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:312,280:0.47:592
chr7	94946255	rs3917498	G	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr7	94953913	rs705380	G	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	94989255	.	CT	C	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=13.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.982;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:44,35:0.44:79
chr7	94991933	rs150582457	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr7	94992064	rs138667127	A	G	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:208,148:0.42:356
chr7	95001555	rs1053275	C	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:195,147:0.43:342
chr7	95019355	rs6977389	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr7	95024046	rs11970910	A	G	4462.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:299,240:0.45:539
chr7	95025547	rs185813039	A	G	8169.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:353,396:0.53:749
chr7	95025552	rs143434185	AAG	A	11056.73	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:425,332:0.44:757
chr7	95025600	rs13226149	G	A	22054.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.04;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,847:1.00:847
chr7	95034775	rs7493	G	C	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:156,150:0.49:306
chr7	95035582	rs3735586	A	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	95039394	rs17876152	C	G	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.165;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:101,69:0.41:170
chr7	95039445	rs2286232	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=7.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-1.007;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:53,64:0.55:117
chr7	95039547	.	C	T	273.56	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr7	95040877	rs17876143	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr7	95041016	rs12026	G	C	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-1.003;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr7	95041542	rs2068604	G	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr7	95054007	rs12704795	T	G	148.10	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr7	95115516	rs73711316	A	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	95125050	rs35506436	CT	C	995.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.200;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.169;QD=8.37;ReadPosRankSum=1.463;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:34,85:0.71:119
chr7	95214911	rs55879823	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	95216247	rs10247649	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	95216262	rs4729201	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	95216394	rs4727323	T	G	12911.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr7	95216559	rs59196288	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr7	95217194	rs374593390	GT	G	1315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-2.221;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:149,102:0.41:251
chr7	95221269	rs2301630	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-1.303;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr7	95442690	rs35397709	T	TAA	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=12.844;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.757;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,42:0.75:56
chr7	95447785	rs10590197	ATT	A	1461.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=9.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.862;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:31,69:0.69:100
chr7	95447788	.	T	A	412.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.606;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:65,42:0.39:107
chr7	95625189	rs10265938	T	C	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.767;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:123,82:0.40:205
chr7	95625460	rs116104078	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr7	95668664	rs1048666	C	A	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	95709602	rs42083	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr7	95709666	rs42082	C	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr7	95727014	rs7794344	T	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	95775848	rs72289549	TA	T	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.960;QD=5.13;ReadPosRankSum=-0.848;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:67,57:0.46:124
chr7	95818475	rs6957286	G	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	95864108	rs6957975	T	C	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	95906627	rs78430478	A	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.617;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,50:0.51:99
chr7	95951014	rs114577678	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr7	96115477	rs369720664	CT	C	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.179;QD=7.64;ReadPosRankSum=1.127;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr7	96116813	rs10250692	T	C	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	96125706	rs150891769	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	96279746	rs6465531	A	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr7	96279994	rs112166466	G	GCA	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=10.049;QD=4.75;ReadPosRankSum=0.471;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr7	96279996	rs56144616	G	A	1501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=7.946;QD=13.53;ReadPosRankSum=-0.520;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:62,49:0.44:111
chr7	96338929	rs10250534	A	G	4161.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:498,255:0.34:753
chr7	96635155	.	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.234;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr7	97481812	rs10486011	C	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr7	97483840	rs76174078	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.117;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	97486213	rs2074891	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=2.360;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr7	97487730	rs41278830	G	A	4927.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:165,239:0.59:404
chr7	97488146	rs36021744	G	GT	1246.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr7	97488350	rs11773753	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr7	97488569	rs1049674	A	T	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	97488733	rs7797354	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr7	97493437	rs2302088	A	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	97599296	rs7784048	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	97616244	rs111371470	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr7	97616670	rs112827162	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-6.657;QD=5.21;ReadPosRankSum=2.094;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr7	97617828	rs145989167	G	A	10279.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:304,486:0.62:790
chr7	97619528	rs149655243	ATTT	A	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=1.778;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr7	97788764	rs10499944	C	T	4921.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:138,233:0.63:371
chr7	97788809	rs17169406	T	C	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:105,139:0.57:244
chr7	97800848	rs139248521	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:190,122:0.39:312
chr7	97819893	.	AAAC	A	45	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=60;MMLQ=27;MQ=59.2;NF=0;NR=2;PP=45;QD=28.5;SC=CTCTGTCTTAAAACAACAACA;SbPval=0.12;Source=Platypus;TC=12;TCF=8;TCR=4;TR=2;WE=97819903;WS=97819885;set=Platypus	GT:AD:AF:DP	1/0:10,2:0.17:12
chr7	97822873	rs58147304	C	T	22473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=1757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=0.029;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:660,1068:0.62:1728
chr7	97846856	rs11471393	CGAG	C	4225.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:87,110:0.56:197
chr7	97847040	rs2279676	G	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:80,105:0.57:185
chr7	97847459	rs56009323	T	G	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr7	97850898	rs188251414	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.673;QD=5.79;ReadPosRankSum=0.693;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr7	97851109	rs4729416	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	97852399	rs11762014	G	A	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:134,275:0.67:409
chr7	97852586	rs11762703	G	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr7	97852895	rs2270596	G	A	2329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.559;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:88,108:0.55:196
chr7	97852899	rs2270595	A	G	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.13;SOR=1.391;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	97853184	rs3816943	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr7	97858647	rs2270603	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr7	97860939	rs2270600	T	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	97862097	rs139511001	GA	G	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.454;QD=2.46;ReadPosRankSum=0.269;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:144,60:0.29:204
chr7	97862265	rs202191868	G	C	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.870;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:190,115:0.38:305
chr7	97863103	rs141227683	T	C	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:353,225:0.39:578
chr7	97866291	rs3735258	G	A	4911.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:142,238:0.63:380
chr7	97873994	rs1874344	G	A	8771.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:244,407:0.63:651
chr7	97911883	rs4448203	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,82:0.44:187
chr7	97933601	rs1045916	C	T	14770.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:2,582:1.00:584
chr7	97937060	rs140203225	C	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:124,69:0.36:193
chr7	97944926	.	T	TA	328	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=13;HapScore=4;MGOF=6;MMLQ=27;MQ=59.91;NF=0;NR=17;PP=328;QD=19.5882352941;SC=CTCCACATACTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=64;TCF=1;TCR=63;TR=17;WE=97944948;WS=97944916;set=Platypus	GT:AD:AF:DP	1/0:47,17:0.27:64
chr7	97944940	rs201549971	T	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.500;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr7	98457988	rs6949335	T	C	11310.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr7	98461062	rs1548622	G	A	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	98478680	rs6465726	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr7	98479194	.	CA	C,CAA	225.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.48;QD=13.28;SOR=0.804;set=HC	GT:AD:AF:DP	1/2:0,8,9:0.47,0.53:17
chr7	98479707	rs6963893	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr7	98495304	rs56294747	G	T	392.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-0.887;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr7	98495556	rs150196540	A	AT	2037.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:101,122:0.55:223
chr7	98497206	rs10279813	C	G	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:101,77:0.43:178
chr7	98503707	rs3214239	TG	T	2834.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	98504025	rs10546305	TTTTA	T	246.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	98506441	rs35310331	C	T	10593.77	.	AC=1;AF=0.500;AN=2;DB;DP=1468;set=Intersection	GT:AD:AF:DP	0/1:865,583:0.40:1448
chr7	98506642	.	AT	A	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.587;QD=2.72;ReadPosRankSum=0.657;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:83,60:0.42:143
chr7	98509550	.	G	C	55	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=6;NR=2;PP=55;QD=11.2214015684;SC=GTGTGATACAGGCTTGGTTTT;SbPval=0.73;Source=Platypus;TC=37;TCF=26;TCR=11;TR=8;WE=98509558;WS=98509540;set=Platypus	GT:AD:AF:DP	1/0:29,8:0.22:37
chr7	98515296	rs1138544	C	T	10282.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:307,483:0.61:790
chr7	98522627	.	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.227;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr7	98522893	rs6967096	C	T	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	98522922	rs114389277	A	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr7	98527918	rs73395107	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr7	98529326	rs17161515	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-2.493;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:105,44:0.30:149
chr7	98534920	rs310736	T	A	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	98540488	rs145763452	T	C	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:186,128:0.41:314
chr7	98546353	rs73395129	T	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr7	98546899	rs11768515	G	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr7	98548682	rs140708777	CTG	C,CTGTG	546.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/2:0.32,0.61:28
chr7	98550654	.	TTGTGTGTGTGTGTGTGTGTGTG	T,TTG	2848.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.37;SOR=2.425;set=HC	GT:AD:AF:DP	1/2:10,32,46:0.36,0.52:88
chr7	98553739	rs3214240	T	TC	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr7	98558880	rs160384	G	C	11152.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr7	98563626	rs160387	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	98574830	rs219842	C	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	98602990	rs219838	G	C	16683.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr7	98633430	rs219801	A	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr7	98637850	rs998849	A	G	1663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.66;ReadPosRankSum=1.354;SOR=0.377;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr7	98637855	rs998848	C	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	98637857	rs35083915	CT	C	1738.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	98637916	rs3033104	ACG	A	2328.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.83;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	98639904	.	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.509;QD=1.11;ReadPosRankSum=-0.988;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr7	98645517	rs219824	G	A	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	98648517	rs57957340	TG	T	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=1.808;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	98649755	rs371032343	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.691;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr7	98650051	rs219797	G	C	9327.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr7	98650099	rs219798	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	98655223	rs61690993	G	T	5566.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.949;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.246;QD=32.36;ReadPosRankSum=-1.108;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:4,168:0.98:172
chr7	98655224	rs34014072	T	TG	5292.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.943;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.200;QD=31.50;ReadPosRankSum=-1.081;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:7,161:0.96:168
chr7	98655231	rs71537231	T	TG	4017.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.350;QD=31.64;ReadPosRankSum=-1.629;SOR=0.632;set=HC	GT:AD:AF:DP	1/1:6,121:0.95:127
chr7	98655235	.	T	G	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.318;QD=14.33;ReadPosRankSum=0.424;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:49,87:0.64:136
chr7	98659720	.	CT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=10.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.826;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr7	98771568	rs6942400	C	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr7	98771581	rs145250441	A	ACCAC	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	98775736	rs80171539	G	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:163,110:0.40:273
chr7	98779740	rs6465740	G	T	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	98782750	rs10953283	C	T	8051.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:246,390:0.61:636
chr7	98785818	rs12673020	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.12;MQRankSum=4.020;QD=8.03;ReadPosRankSum=-0.198;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr7	98790607	rs369709836	TA	T	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=7.583;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.345;QD=5.57;ReadPosRankSum=2.183;SOR=1.522;set=HC	GT:AD:AF:DP	0/1:56,62:0.53:118
chr7	98790669	rs7783606	G	C	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:113,172:0.60:285
chr7	98790699	rs7783618	G	A	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:125,216:0.63:341
chr7	98790885	rs34088480	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	98793061	rs73401379	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr7	98800690	rs10499949	A	G	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:93,135:0.59:228
chr7	98800834	rs61749907	A	G	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:121,153:0.56:274
chr7	98800967	rs67749476	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr7	98805295	.	G	C	261	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=2;MGOF=37;MMLQ=28;MQ=54.33;NF=0;NR=14;PP=261;QD=21.1265151819;SC=GTCTCGCTCTGTTGCCCAGAC;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=14;WE=98805303;WS=98805285;set=Platypus	GT:AD:AF:DP	1/0:8,14:0.64:22
chr7	98870997	rs28608208	A	G	12702.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:4,492:0.99:496
chr7	98877075	rs73407298	G	A	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr7	98877267	rs11769461	C	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:197,111:0.36:308
chr7	98878654	rs55790900	A	G	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:243,114:0.32:357
chr7	98878666	rs113082974	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:216,98:0.31:314
chr7	98881199	rs17161650	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr7	98881501	rs61742315	G	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:65,90:0.58:155
chr7	98885645	rs61747205	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:121,80:0.40:201
chr7	98895250	rs733991	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	98931105	rs2301889	A	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:76,108:0.59:184
chr7	98936001	.	A	ATTTTTTT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=10.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.192;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr7	98936023	.	T	TTTC	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=1.862;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr7	98937771	rs145394943	TTTTG	T	1422	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.907;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.359;QD=38.43;ReadPosRankSum=-2.564;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr7	98955804	rs2286162	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	98956159	rs5886103	CTT	C	451.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.084;QD=10.04;ReadPosRankSum=-2.450;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr7	98963340	rs10268984	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr7	98984354	rs1045012	G	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:125,163:0.57:288
chr7	98984399	rs4765	C	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:108,83:0.43:191
chr7	98990236	rs10251282	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr7	98991552	rs115258218	G	C	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:228,136:0.37:364
chr7	98991944	rs10243678	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	98992253	rs704798	G	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr7	98998153	rs28668326	G	A	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:167,241:0.59:408
chr7	99009237	rs10085823	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr7	99012885	rs10953289	G	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr7	99014984	rs2003499	T	C	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	99017071	rs14935	C	T	4699.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:391,257:0.40:648
chr7	99023246	rs28457808	C	G	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	99032399	rs11973173	A	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr7	99032677	rs114565866	C	T	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:275,200:0.42:475
chr7	99036920	rs10215854	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	99039313	rs34022779	A	AT	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr7	99047978	rs883403	T	C	11933.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr7	99048432	rs2280600	T	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	99049876	rs45599236	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:113,65:0.37:178
chr7	99050039	rs17854665	G	A	8852.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:289,426:0.60:715
chr7	99054289	rs1043466	T	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	99055898	rs3197990	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr7	99055940	rs3528	T	C	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,101:0.59:170
chr7	99056099	rs2280601	T	C	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	99057701	rs2293256	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr7	99077161	rs73403243	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	99081730	rs6962772	A	G	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	99092352	rs10633389	T	TTTTTA	3156.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:27,80:0.75:107
chr7	99101329	rs73403251	C	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr7	99111358	.	C	A	97	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=14;HapScore=2;MGOF=6;MMLQ=22;MQ=57.09;NF=1;NR=7;PP=97;QD=16.4714015684;SC=GTTAAAAAAACAAAAAAACAA;SbPval=0.02;Source=Platypus;TC=18;TCF=10;TCR=8;TR=8;WE=99111366;WS=99111348;set=Platypus	GT:AD:AF:DP	1/0:10,8:0.44:18
chr7	99117345	rs73403257	G	A	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:69,121:0.64:190
chr7	99130875	rs3137	G	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	99145845	rs10238965	C	T	12006.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr7	99160079	rs144903820	A	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:143,72:0.33:215
chr7	99168867	rs73405251	G	A	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:108,161:0.60:269
chr7	99169200	.	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:111,75:0.40:186
chr7	99201994	rs73405285	T	C	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr7	99217424	rs10282706	G	A	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:158,241:0.60:399
chr7	99220083	rs7808022	A	C	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:95,138:0.59:233
chr7	99227172	rs1859690	A	G	10270.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:332,487:0.59:819
chr7	99245914	rs15524	A	G	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:34,82:0.71:116
chr7	99262622	rs41303322	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.106;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr7	99262805	rs28383472	T	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,102:0.66:155
chr7	99282779	rs79249951	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,46:0.36:128
chr7	99282853	rs114159766	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,33:0.36:91
chr7	99293475	rs2740565	T	A	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:248,157:0.39:405
chr7	99293859	rs11401860	C	CT	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=3.453;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:40,38:0.49:78
chr7	99297601	rs2037500	A	C	8317.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr7	99297804	rs2177180	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	99302994	rs10211	C	T	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:162,141:0.47:303
chr7	99303094	rs12360	G	A	2914.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:278,166:0.37:444
chr7	99306566	rs2687077	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr7	99306685	rs2257401	C	G	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:507,263:0.34:770
chr7	99314986	rs2687075	A	G	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:250,168:0.40:418
chr7	99358615	rs12721620	G	A	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.64;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	99361466	rs2242480	C	T	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	99365943	rs2687116	C	A	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.004;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:38,59:0.61:97
chr7	99434077	rs61469810	TA	T	4952.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:152,151:0.50:303
chr7	99434266	rs78519346	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:167,89:0.35:256
chr7	99436198	rs800672	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	99445791	rs45450092	G	T	5788.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:238,288:0.55:526
chr7	99447046	rs678040	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr7	99447123	rs568859	G	A	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:89,97:0.52:186
chr7	99447241	rs800667	T	C	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr7	99447339	rs71515285	TTC	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr7	99447623	rs675644	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.155;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr7	99447628	rs648515	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.724;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr7	99454537	rs45565841	C	T	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	99454620	rs17161968	T	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	99457321	rs45595440	G	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	99461133	rs12530558	A	T	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	99473624	rs1025576	T	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	99473650	rs57619271	T	C	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	99473801	rs73403577	A	G	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr7	99474007	rs60737583	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr7	99474427	rs2572023	A	G	10302.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr7	99474729	rs2572022	T	C	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	99490501	rs6957718	T	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	99499872	rs2527913	A	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr7	99500864	rs61742750	T	G	6571.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:233,326:0.58:559
chr7	99500911	rs2247761	A	G	15078.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr7	99501313	rs2572003	A	T	11757.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr7	99507352	rs58242927	GT	G	482.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.974;QD=4.93;ReadPosRankSum=1.508;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:38,60:0.61:98
chr7	99507353	rs2572001	T	G	109.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.685;QD=1.11;ReadPosRankSum=0.152;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:71,28:0.28:99
chr7	99507354	rs77711029	T	G	219.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.027;QD=2.18;ReadPosRankSum=2.227;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chr7	99514417	rs2571997	A	C	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:4,241:0.98:245
chr7	99526754	rs73405465	G	A	10350.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	0/1:316,475:0.60:791
chr7	99567858	rs140897498	TTTTTTTG	T	1157.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr7	99567908	rs2527917	C	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr7	99693337	rs7799115	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	99693615	rs2307350	G	A	4696.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:329,243:0.42:572
chr7	99696370	rs1534309	C	G	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,114:0.62:184
chr7	99697041	rs72518456	C	CA	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=15.306;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.525;QD=5.57;ReadPosRankSum=0.238;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr7	99697802	rs142726587	CTAAT	C	931.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr7	99699626	rs2293481	T	C	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:93,176:0.65:269
chr7	99700471	rs74961284	C	T	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:256,144:0.36:400
chr7	99701640	rs4729577	T	C	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:120,191:0.61:311
chr7	99703669	rs79617997	G	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.025;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:139,48:0.26:187
chr7	99706303	rs4134923	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	99707712	rs2272338	A	G	7591.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:230,346:0.60:576
chr7	99707950	rs4134917	C	T	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr7	99710584	rs4134904	A	AG	4980.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:108,164:0.60:272
chr7	99711461	rs34119670	AC	A	9653.73	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:216,426:0.66:642
chr7	99711868	rs60187078	GC	G	10739.73	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:223,394:0.64:617
chr7	99720640	rs1569055	C	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	99722173	rs60551236	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr7	99725466	rs78225840	G	T	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:89,177:0.67:266
chr7	99747130	rs12878	G	A	12133.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:332,574:0.63:906
chr7	99747378	rs7785392	G	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	99751017	rs3736591	A	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:128,182:0.59:310
chr7	99751279	rs76212539	C	T	9347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=-1.258;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:179,242:0.57:421
chr7	99751279	.	CTG	TTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=27;MQ=59.94;NF=48;NR=60;PP=2944;QD=20;SC=TTGGGACTCCCTGGTATCAGA;SbPval=0.65;Source=Platypus;TC=207;TCF=97;TCR=110;TR=108;WE=99751289;WS=99751269;set=Platypus	GT:AD:AF:DP	0/1:99,108:0.52:207
chr7	99751281	rs3736590	G	T	9350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=-0.716;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:178,232:0.57:410
chr7	99751610	rs77496317	G	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr7	99753121	rs2272337	A	G	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:178,163:0.48:341
chr7	99757955	rs112880621	G	A	5298.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:480,282:0.37:762
chr7	99758136	rs3800951	T	G	12510.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:380,594:0.61:974
chr7	99768939	rs77487872	G	A	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:73,117:0.62:190
chr7	99771305	rs71126309	C	CTCTT	1047.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.745;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=2.368;QD=17.18;ReadPosRankSum=0.404;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr7	99772298	rs10252037	A	C	16192.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr7	99774122	rs12705073	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr7	99774615	rs61370040	GC	G	1679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=3.553;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:38,65:0.63:103
chr7	99780282	rs4729579	C	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr7	99796057	rs111629818	A	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,75:0.63:119
chr7	99796072	rs3823642	T	C	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr7	99796146	rs3735241	A	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:100,90:0.47:190
chr7	99797031	rs2272345	C	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:64,97:0.60:161
chr7	99799845	rs1043915	T	A	5470.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:178,257:0.59:435
chr7	99802812	rs2246713	G	C	4185.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:333,219:0.40:552
chr7	99810643	rs1618851	T	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr7	99810695	rs73397555	T	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,135:0.64:210
chr7	99811204	rs1623264	G	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr7	99811313	rs1624099	G	A	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:270,176:0.39:446
chr7	99811464	rs1727130	C	G	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:370,251:0.40:621
chr7	99816179	rs1727142	T	C	8346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-3.712;QD=11.64;ReadPosRankSum=1.655;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:306,411:0.57:717
chr7	99816256	rs1727143	C	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:465,144:0.24:609
chr7	99816272	rs1636986	A	G	20735.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=43.75;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr7	99816275	rs1636987	G	C	20735.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.17;QD=46.18;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr7	99817585	rs7786505	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr7	99817859	rs2906645	A	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	99818000	rs144843179	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.500;MQ=50.55;MQRankSum=-3.076;QD=0.59;ReadPosRankSum=-2.022;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:153,28:0.15:181
chr7	99818137	rs2906646	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:102,59:0.37:161
chr7	99818374	rs113071786	C	G	8997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.135;QD=13.06;ReadPosRankSum=-0.521;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:257,432:0.63:689
chr7	99818927	rs705867	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:205,124:0.38:329
chr7	99819004	rs141918023	CTCTG	C	5308.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	99821381	rs858508	C	G	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	99821470	rs858509	A	G	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr7	99821685	rs863450	C	T	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	99821838	.	ATTTTTTTT	A,ATTTTTTTTT	483	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=20;HapScore=2;MGOF=11;MMLQ=20;MQ=58.43;NF=0,0;NR=6,6;PP=483,46;QD=81.0;SC=TTCCAACAGGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6,6;WE=99821853;WS=99821828;set=Platypus	GT:AF:DP	0/1:0.67:9
chr7	99821894	rs858510	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr7	99950408	rs7795805	A	G	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-0.901;QD=19.83;ReadPosRankSum=-0.081;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:45,50:0.53:95
chr7	99950415	.	TCA	T	1942.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=-0.865;QD=20.24;ReadPosRankSum=0.484;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:46,50:0.52:96
chr7	99950418	.	T	TGC	1942.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=-0.865;QD=20.24;ReadPosRankSum=0.598;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:46,50:0.52:96
chr7	99950427	rs7799894	G	T	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=52.83;MQRankSum=-1.023;QD=19.06;ReadPosRankSum=1.477;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:50,49:0.49:99
chr7	99950450	rs7799901	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=51.03;MQRankSum=-1.546;QD=8.44;ReadPosRankSum=2.492;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:66,48:0.42:114
chr7	99950550	rs182014723	T	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr7	99956031	rs59251177	C	G	10620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.023;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:469,541:0.54:1010
chr7	99971313	rs2405442	T	C	32586.77	.	AC=2;AF=1.00;AN=2;DB;DP=1289;set=Intersection	GT:AD:AF:DP	1/1:0,1261:1.00:1261
chr7	99971565	rs145101042	C	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:107,58:0.35:165
chr7	99971834	rs1859788	A	G	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	99987805	rs7783550	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	99997062	rs149712040	TTC	T	1385.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,45:0.31:145
chr7	100001978	rs6958977	A	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:95,118:0.55:213
chr7	100004446	rs1476679	C	T	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	100006296	rs73401485	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:66,86:0.57:152
chr7	100007298	rs73401490	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr7	100013457	rs5015756	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	100016844	rs11763414	C	G	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:119,136:0.53:255
chr7	100018205	rs73401499	G	C	9278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-0.516;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:272,447:0.62:719
chr7	100028187	rs6975729	C	T	9123.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:371,435:0.54:806
chr7	100028484	rs6962151	T	C	8562.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:240,386:0.62:626
chr7	100031191	rs142550843	CAG	C	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	100033148	rs61739416	A	G	8572.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:227,406:0.64:633
chr7	100061723	rs112473927	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr7	100064719	rs7806537	A	G	10623.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:421,520:0.55:941
chr7	100065443	rs7811142	A	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:79,126:0.61:205
chr7	100072031	rs7809801	T	C	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:112,178:0.61:290
chr7	100074816	.	GA	G	1225.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.782;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=27.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.396;SOR=3.490;set=HC	GT:AD:AF:DP	0/1:74,45:0.38:119
chr7	100074818	rs374075982	GA	G	442.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=27.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.701;SOR=3.389;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr7	100088640	rs2897358	C	G	8558.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:240,419:0.64:659
chr7	100146572	rs72007003	A	AC	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-0.574;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr7	100146619	rs73407316	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	100151719	rs61742738	G	A	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:137,201:0.59:338
chr7	100154079	rs6651109	A	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	100160094	rs73154902	A	G	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:186,151:0.45:337
chr7	100160119	rs73711133	T	C	6388.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:325,208:0.39:533
chr7	100160264	rs17855473	T	C	15045.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:2,581:1.00:583
chr7	100171788	rs73711136	C	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr7	100172084	rs60247889	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr7	100173481	rs2075668	A	G	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	100174207	rs138200144	CAAAGGTACA	C	503.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:66,18:0.21:84
chr7	100175473	rs909152	T	C	21988.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:1,842:1.00:843
chr7	100180060	rs34440977	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:206,128:0.38:334
chr7	100198386	rs11768465	C	T	18713.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:1,723:1.00:724
chr7	100200005	rs147612265	C	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr7	100201230	rs112882557	AC	A	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:3,93:0.97:96
chr7	100202219	rs56328569	C	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr7	100205548	rs114747798	T	C	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:217,129:0.37:346
chr7	100205602	rs35142716	G	A	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:368,201:0.35:569
chr7	100210597	rs73407367	A	C	15508.77	.	AC=1;AF=0.500;AN=2;DB;DP=1321;set=Intersection	GT:AD:AF:DP	0/1:543,769:0.59:1312
chr7	100212386	rs202084428	T	TA	1342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=3.161;QD=7.54;ReadPosRankSum=1.115;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:87,91:0.51:178
chr7	100227188	rs7457868	A	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	100240771	rs1052897	A	T	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.56;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	100273961	rs112816501	G	C	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:99,124:0.56:223
chr7	100280896	rs221793	A	C	9603.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	100281768	rs221794	T	C	11881.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:1,455:1.00:456
chr7	100282591	rs150575556	TTGAGCTGGGGCC	T	7520.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:156,193:0.55:349
chr7	100283261	rs221795	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	100284510	rs35436931	TG	T	10261.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	100284913	rs221796	C	G	13350.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr7	100285974	rs221797	A	C	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	100319680	.	C	CT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.524;QD=1.03;ReadPosRankSum=-0.440;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:133,37:0.22:170
chr7	100367573	rs17147735	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr7	100371100	rs2734880	C	A	8315.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr7	100371114	rs314298	C	T	6535.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	100373536	rs58910156	C	T	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	100376978	rs314303	T	C	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr7	100377082	rs531503	T	C	22257.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,863:1.00:863
chr7	100383555	rs3847058	A	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	100383815	rs73411145	G	T	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	100385459	rs61256171	C	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr7	100385532	rs60783739	A	C	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr7	100385578	rs59541653	G	C	12586.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:2,488:1.00:490
chr7	100386812	rs7808101	G	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	100386900	rs191137	T	C	16175.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:3,641:1.00:644
chr7	100387083	rs7808311	C	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	100388501	.	T	TAAA	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=6.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=1.618;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr7	100388741	rs73711190	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	100391554	rs73411181	C	T	8709.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:312,415:0.57:727
chr7	100391581	rs314339	T	C	5320.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:356,281:0.44:637
chr7	100391644	rs314340	T	C	12452.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr7	100393099	rs150312175	TAAC	T	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=1.485;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	100393141	rs314343	C	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	100395003	rs314344	G	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.839;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:169,65:0.28:234
chr7	100401098	rs112803997	C	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:164,75:0.31:239
chr7	100401270	rs314348	T	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	100410656	rs61651680	C	T	15118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DB;DP=1188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=2.427;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:470,704:0.60:1174
chr7	100410656	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=24;MQ=59.93;NF=189;NR=212;PP=2944;QD=20;SC=TCTCCCGCTCCAGTGTGGCCC;SbPval=0.47;Source=Platypus;TC=666;TCF=306;TCR=360;TR=401;WE=100410665;WS=100410646;set=Platypus	GT:AD:AF:DP	0/1:265,401:0.60:666
chr7	100410657	rs314358	A	G	43958.77	.	AC=2;AF=1.00;AN=2;DB;DP=1189;set=Intersection	GT:AD:AF:DP	1/1:1,1175:1.00:1176
chr7	100410928	rs367581153	G	GTT	150.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.57;ReadPosRankSum=0.732;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	100411278	rs314359	T	C	9159.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	100411372	rs74340862	T	C	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:226,187:0.45:413
chr7	100414704	.	CAAA	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=18.74;ReadPosRankSum=0.636;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,45:0.78:58
chr7	100414787	rs116672851	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:219,119:0.35:338
chr7	100416139	rs3857809	T	C	15768.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr7	100416250	rs144173	A	G	23335.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,891:1.00:891
chr7	100424577	rs141919245	G	GC	1896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.369;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:139,106:0.43:245
chr7	100424586	rs35907339	CG	C	2042.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=5.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.083;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:147,101:0.41:248
chr7	100424587	rs2304374	G	C	4148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=6.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=0.192;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:104,144:0.58:248
chr7	100424727	rs116409758	G	A	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.319;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:62,49:0.44:111
chr7	100424776	rs2571606	C	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr7	100456384	rs73714203	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	100458795	rs314378	T	C	5591.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:508,305:0.38:813
chr7	100459265	rs111459384	CTT	C	4293.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr7	100459585	rs371080486	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.499;QD=2.08;ReadPosRankSum=0.851;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr7	100463094	rs75492916	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	100465619	rs66775024	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:130,169:0.57:299
chr7	100467975	rs10627414	C	CCT	5230.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=45.48;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	100468284	rs1054391	A	G	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:397,226:0.36:623
chr7	100468398	rs7783543	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:152,72:0.32:224
chr7	100470956	rs114324402	G	A	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:282,206:0.42:488
chr7	100478763	rs57137266	CG	C,CGG	548.37	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	0/1:0.65:37
chr7	100482026	rs15624	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:214,87:0.29:301
chr7	100482339	rs55833792	C	T	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr7	100485172	rs57753967	G	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr7	100486110	rs11171	C	T	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:235,144:0.38:379
chr7	100486656	rs13241786	T	G	20308.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.268;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,786:1.00:787
chr7	100487721	rs17228616	G	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	100490077	rs7636	G	A	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:328,225:0.41:553
chr7	100494222	rs66793456	G	GC	11446.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	100547148	.	GCAA	G	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.245;QD=12.16;ReadPosRankSum=-1.338;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	100547155	rs74789991	C	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.344;QD=11.06;ReadPosRankSum=-0.112;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	100547173	rs75482949	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.226;QD=12.99;ReadPosRankSum=-1.514;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	100547175	rs78695034	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.192;QD=13.41;ReadPosRankSum=-1.901;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	100547179	.	GCACGCCC	G	149	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=1;MGOF=59;MMLQ=24;MQ=59.98;NF=1;NR=2;PP=149;QD=64.0;SC=TTCATTACGTGCACGCCCCAG;SbPval=0.75;Source=Platypus;TC=16;TCF=6;TCR=10;TR=3;WE=100547203;WS=100547163;set=Platypus	GT:AD:AF:DP	1/0:13,3:0.19:16
chr7	100547182	rs76728014	C	T	367.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.683;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.876;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.350;QD=11.14;ReadPosRankSum=-0.576;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	100547183	.	GC	G	358.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.156;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.876;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.350;QD=10.87;ReadPosRankSum=-0.479;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	100547185	.	C	T	367.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.945;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.876;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.350;QD=11.14;ReadPosRankSum=-0.402;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	100547189	.	GGGCCAC	G	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.591;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.538;QD=8.43;ReadPosRankSum=-0.055;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr7	100547211	rs79277565	T	C	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.334;QD=12.82;ReadPosRankSum=-0.780;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr7	100547215	rs77163569	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.338;QD=11.96;ReadPosRankSum=-0.549;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr7	100547220	rs77805555	A	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.363;QD=13.03;ReadPosRankSum=-0.119;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr7	100547225	rs77066311	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.339;QD=12.10;ReadPosRankSum=-0.303;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr7	100547227	rs76736259	T	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.385;QD=12.76;ReadPosRankSum=0.149;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr7	100547231	rs77939975	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.510;QD=4.19;ReadPosRankSum=-0.804;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr7	100547238	rs79636720	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr7	100547323	.	G	A	1093	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=1;MGOF=56;MMLQ=27;MQ=59.81;NF=9;NR=12;PP=1093;QD=53.7033910737;SC=CACAGGTAAGGGGGAGAGGCG;SbPval=0.76;Source=Platypus;TC=75;TCF=37;TCR=38;TR=21;WE=100547357;WS=100547313;set=Platypus	GT:AD:AF:DP	1/0:54,21:0.28:75
chr7	100547525	rs142704104	ACC	A	396.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	100549414	rs75254397	C	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.851;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.998;QD=6.04;ReadPosRankSum=-0.060;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:133,30:0.18:163
chr7	100549415	rs75547895	A	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.450;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.004;QD=6.02;ReadPosRankSum=-0.208;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:138,31:0.18:169
chr7	100549421	rs75196671	G	C	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.962;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=6.753;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.853;QD=5.83;ReadPosRankSum=-1.034;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:161,40:0.20:201
chr7	100549422	rs78470577	A	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.066;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=8.101;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.888;QD=5.80;ReadPosRankSum=-0.836;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:165,40:0.20:205
chr7	100549426	rs78724937	A	G	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.151;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=9.487;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.956;QD=5.16;ReadPosRankSum=-0.310;SOR=1.583;set=HC	GT:AD:AF:DP	0/1:186,43:0.19:229
chr7	100549505	rs74588241	T	C	6640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;ClippingRankSum=0.000;DB;DP=1223;ExcessHet=3.0103;FS=5.864;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.966;QD=5.47;ReadPosRankSum=-2.679;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:988,225:0.19:1213
chr7	100549512	rs77667788	A	T	7361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.658;ClippingRankSum=0.000;DB;DP=1314;ExcessHet=3.0103;FS=5.638;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.953;QD=5.66;ReadPosRankSum=-2.311;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:1058,243:0.19:1301
chr7	100549516	rs76951301	C	A	8341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.967;ClippingRankSum=0.000;DB;DP=1375;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.199;QD=6.13;ReadPosRankSum=-2.131;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:1104,257:0.19:1361
chr7	100549527	rs77426926	A	G	10149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;ClippingRankSum=0.000;DB;DP=1556;ExcessHet=3.0103;FS=5.515;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.753;QD=6.58;ReadPosRankSum=-3.317;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:1220,322:0.21:1542
chr7	100549530	rs77626205	A	G	10624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.476;ClippingRankSum=0.000;DB;DP=1606;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.726;QD=6.68;ReadPosRankSum=-3.318;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:1252,339:0.21:1591
chr7	100549537	rs75781078	G	A	11615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.352;ClippingRankSum=0.000;DB;DP=1664;ExcessHet=3.0103;FS=6.542;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.683;QD=7.04;ReadPosRankSum=-2.016;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:1292,359:0.22:1651
chr7	100549540	.	A	C	11894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.574;ClippingRankSum=0.000;DP=1694;ExcessHet=3.0103;FS=7.778;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.636;QD=7.08;ReadPosRankSum=-1.950;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:1305,375:0.22:1680
chr7	100549543	rs79492129	G	A	12346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.419;ClippingRankSum=0.000;DB;DP=1712;ExcessHet=3.0103;FS=7.778;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.858;QD=7.27;ReadPosRankSum=-1.108;SOR=1.367;set=HC	GT:AD:AF:DP	0/1:1317,381:0.22:1698
chr7	100549547	rs77743944	TG	CC	15091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.919;ClippingRankSum=0.000;DB;DP=1736;ExcessHet=3.0103;FS=9.074;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.844;QD=8.76;ReadPosRankSum=0.043;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:1331,391:0.23:1722
chr7	100549573	rs73163748	G	T	20105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;ClippingRankSum=0.000;DB;DP=1967;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.224;QD=10.30;ReadPosRankSum=2.420;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:1390,562:0.29:1952
chr7	100549583	rs73163749	G	A	22441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.613;ClippingRankSum=0.000;DB;DP=1999;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.473;QD=11.33;ReadPosRankSum=2.394;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:1356,624:0.32:1980
chr7	100549592	rs73163750	TT	AA	24161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=2053;ExcessHet=3.0103;FS=2.629;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.88;ReadPosRankSum=3.902;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:1362,672:0.33:2034
chr7	100549650	rs73398716	A	G	18709.77	.	AC=1;AF=0.500;AN=2;DB;DP=2415;set=Intersection	GT:AD:AF:DP	0/1:1371,1017:0.43:2388
chr7	100549697	rs77036391	A	G	48349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=2818;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=0.369;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:1506,1273:0.46:2779
chr7	100549703	rs78164286	C	T	48718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=2852;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=1.123;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:1518,1293:0.46:2811
chr7	100549787	rs73714227	CA	TG	48999.77	.	AC=1;AF=0.500;AN=2;DB;DP=2701;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1371,1279:0.48:2650
chr7	100549840	rs75741102	C	T	9702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;ClippingRankSum=0.000;DB;DP=2861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.46;ReadPosRankSum=3.146;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:2126,682:0.24:2808
chr7	100549873	rs74193966	G	A	40618.77	.	AC=1;AF=0.500;AN=2;DB;DP=2520;set=Intersection	GT:AD:AF:DP	0/1:1382,1102:0.44:2484
chr7	100549884	rs73163752	C	T	41016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=2505;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.836;QD=16.60;ReadPosRankSum=-1.144;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1414,1057:0.43:2471
chr7	100549894	rs78007565	T	C	39433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=2455;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.308;QD=16.27;ReadPosRankSum=-0.172;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:1421,1003:0.41:2424
chr7	100549896	rs79035545	G	C	38968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.823;ClippingRankSum=0.000;DB;DP=2453;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.309;QD=16.08;ReadPosRankSum=-0.137;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:1423,1000:0.41:2423
chr7	100549902	rs75991009	C	T	39028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.130;ClippingRankSum=0.000;DB;DP=2460;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.293;QD=16.06;ReadPosRankSum=0.334;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:1439,991:0.41:2430
chr7	100549914	rs73714228	G	A	38105.77	.	AC=1;AF=0.500;AN=2;DB;DP=2484;set=Intersection	GT:AD:AF:DP	0/1:1469,982:0.40:2451
chr7	100549935	rs73714229	T	G	37306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.359;ClippingRankSum=0.000;DB;DP=2457;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.232;QD=15.37;ReadPosRankSum=-0.142;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:1460,968:0.40:2428
chr7	100549942	rs73714230	T	C	36112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=2460;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.217;QD=14.85;ReadPosRankSum=-1.734;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:1448,984:0.40:2432
chr7	100549979	rs73398717	C	T	18053.77	.	AC=1;AF=0.500;AN=2;DB;DP=2341;set=Intersection	GT:AD:AF:DP	0/1:1364,957:0.41:2321
chr7	100550032	rs111723000	C	CCCT	25638.73	.	AC=1;AF=0.500;AN=2;DB;DP=1849;set=Intersection	GT:AD:AF:DP	0/1:983,680:0.41:1663
chr7	100550079	rs28379747	A	C	12731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=1715;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.713;QD=7.56;ReadPosRankSum=-1.717;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:1000,683:0.41:1683
chr7	100550133	rs74197937	A	G	31771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=2007;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=2.311;QD=16.10;ReadPosRankSum=-1.575;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:1127,846:0.43:1973
chr7	100550138	rs73714233	C	T	32148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=2044;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=2.287;QD=15.99;ReadPosRankSum=-1.599;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1138,872:0.43:2010
chr7	100550184	rs73714234	C	A	29916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=1989;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=15.30;ReadPosRankSum=3.212;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:1103,852:0.44:1955
chr7	100550191	rs35523587	C	T	10672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;ClippingRankSum=0.000;DB;DP=1947;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.699;QD=5.59;ReadPosRankSum=-2.673;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:1285,625:0.33:1910
chr7	100550203	rs75141335	T	A	28897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0.000;DB;DP=1831;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.193;QD=16.09;ReadPosRankSum=4.344;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:1056,740:0.41:1796
chr7	100550205	rs77471356	A	C	28108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=1829;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.197;QD=15.68;ReadPosRankSum=4.090;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:1057,736:0.41:1793
chr7	100550245	rs66732041	G	A	16853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=1658;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.860;QD=10.37;ReadPosRankSum=0.103;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:1118,507:0.31:1625
chr7	100550252	rs67587735	A	G	16334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0.000;DB;DP=1614;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.679;QD=10.29;ReadPosRankSum=-0.523;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:1128,460:0.29:1588
chr7	100550271	rs71540914	A	G	13509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=1584;ExcessHet=3.0103;FS=2.910;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.016;QD=8.64;ReadPosRankSum=-5.182;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:1171,392:0.25:1563
chr7	100550282	rs71540915	C	T	7542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.824;ClippingRankSum=0.000;DB;DP=1518;ExcessHet=3.0103;FS=6.975;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-3.611;QD=5.26;ReadPosRankSum=-1.445;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:1168,265:0.18:1433
chr7	100550285	rs78054189	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.239;ClippingRankSum=0.000;DB;DP=1490;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-2.125;QD=0.20;ReadPosRankSum=-0.963;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:1316,106:0.07:1422
chr7	100550286	.	T	C	3291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.166;ClippingRankSum=0.000;DP=1486;ExcessHet=3.0103;FS=4.104;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.145;QD=2.43;ReadPosRankSum=-3.851;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:1191,165:0.12:1356
chr7	100550289	rs71540916	G	T	8397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.343;ClippingRankSum=0.000;DB;DP=1572;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-5.663;QD=5.69;ReadPosRankSum=-4.388;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:1193,283:0.19:1476
chr7	100550291	.	C	G	3879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.120;ClippingRankSum=0.000;DP=1505;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.863;QD=2.80;ReadPosRankSum=-5.455;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:1216,170:0.12:1386
chr7	100550304	rs71540918	C	T	8539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.564;ClippingRankSum=0.000;DB;DP=1785;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.460;QD=5.02;ReadPosRankSum=-4.713;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:1409,293:0.17:1702
chr7	100550307	.	A	T	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.996;ClippingRankSum=0.000;DP=1774;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.639;QD=0.76;ReadPosRankSum=-2.921;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:1542,150:0.09:1692
chr7	100550312	.	T	C	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.460;ClippingRankSum=0.000;DP=1738;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-2.924;QD=0.90;ReadPosRankSum=-1.844;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:1516,141:0.09:1657
chr7	100550315	rs76964559	T	C	20072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.085;ClippingRankSum=0.000;DB;DP=1728;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-12.652;QD=12.16;ReadPosRankSum=-7.850;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:1113,538:0.33:1651
chr7	100550316	rs78759433	G	A	2586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=0.000;DB;DP=1715;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.572;QD=1.58;ReadPosRankSum=-8.339;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:1471,169:0.10:1640
chr7	100550318	.	G	A	1508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;ClippingRankSum=0.000;DP=1710;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.865;QD=0.92;ReadPosRankSum=-1.729;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:1497,144:0.09:1641
chr7	100550325	rs75788887	A	G	840.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.307;ClippingRankSum=0.000;DB;DP=1677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.990;QD=0.52;ReadPosRankSum=0.054;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:1501,121:0.07:1622
chr7	100550326	rs111371899	A	G	6840.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.509;ClippingRankSum=0.000;DB;DP=1663;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-12.931;QD=4.25;ReadPosRankSum=-1.463;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:1363,246:0.15:1609
chr7	100550327	rs373932626	C	T	11872.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.107;ClippingRankSum=0.000;DB;DP=1647;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-8.118;QD=8.07;ReadPosRankSum=-1.670;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:1123,349:0.24:1472
chr7	100550328	rs74866207	A	G	16871.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=17.771;ClippingRankSum=0.000;DB;DP=1632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-8.948;QD=10.67;ReadPosRankSum=-1.521;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:1114,467:0.30:1581
chr7	100550330	rs71540919	T	C	2694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.792;ClippingRankSum=0.000;DB;DP=1630;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.992;QD=1.71;ReadPosRankSum=-1.613;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:1409,171:0.11:1580
chr7	100550338	rs75318416	GG	CA	17345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.010;ClippingRankSum=0.000;DB;DP=1645;ExcessHet=3.0103;FS=1.209;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-9.498;QD=10.83;ReadPosRankSum=0.215;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:1114,487:0.30:1601
chr7	100550342	rs74184351	T	C	19022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.666;ClippingRankSum=0.000;DB;DP=1615;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-9.476;QD=12.09;ReadPosRankSum=1.256;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:1093,480:0.31:1573
chr7	100550348	.	A	C	3131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DP=1686;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.633;QD=1.90;ReadPosRankSum=-1.133;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:1467,179:0.11:1646
chr7	100550354	rs74220905	C	A	1676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.152;ClippingRankSum=0.000;DB;DP=1669;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.957;QD=1.03;ReadPosRankSum=-2.943;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:1484,148:0.09:1632
chr7	100550358	rs74184446	C	T	9988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.206;ClippingRankSum=0.000;DB;DP=1746;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.942;QD=6.98;ReadPosRankSum=-1.234;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:1110,321:0.22:1431
chr7	100550360	.	T	C	3897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;ClippingRankSum=0.000;DP=1713;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.767;QD=2.34;ReadPosRankSum=-0.309;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1458,206:0.12:1664
chr7	100550364	rs74188306	C	T	11106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.558;ClippingRankSum=0.000;DB;DP=1713;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-10.726;QD=6.61;ReadPosRankSum=1.674;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:1341,340:0.20:1681
chr7	100550376	.	C	T	2958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DP=1775;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.996;QD=1.82;ReadPosRankSum=3.706;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:1450,177:0.11:1627
chr7	100550384	rs77636516	C	T	2888.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=1785;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=2.248;QD=1.63;ReadPosRankSum=4.695;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:1582,186:0.11:1768
chr7	100550385	.	C	A	700.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DP=1786;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-6.574;QD=0.40;ReadPosRankSum=-0.179;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:1637,132:0.07:1769
chr7	100550389	.	A	G	3697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DP=1771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-6.467;QD=2.11;ReadPosRankSum=1.993;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:1557,197:0.11:1754
chr7	100550395	.	A	G	3207.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=1766;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-5.185;QD=1.83;ReadPosRankSum=2.089;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:1560,191:0.11:1751
chr7	100550396	rs74213821	G	C	23483.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=1751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-6.215;QD=13.57;ReadPosRankSum=-2.786;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:1028,702:0.41:1730
chr7	100550399	.	G	C	886.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=1778;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-9.437;QD=0.50;ReadPosRankSum=-0.031;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:1624,140:0.08:1764
chr7	100550400	.	G	A	3548.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DP=1772;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.779;QD=2.02;ReadPosRankSum=2.905;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:1546,210:0.12:1756
chr7	100550421	.	C	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DP=1752;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.953;QD=0.33;ReadPosRankSum=3.548;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:1605,129:0.07:1734
chr7	100550427	.	C	T	787.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DP=1707;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.446;QD=0.47;ReadPosRankSum=2.853;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:1559,129:0.08:1688
chr7	100550428	.	C	T	766.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DP=1705;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.922;QD=0.45;ReadPosRankSum=2.359;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:1555,131:0.08:1686
chr7	100550432	rs111924697	C	T	6059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=1663;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.454;QD=3.69;ReadPosRankSum=-1.664;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:1378,263:0.16:1641
chr7	100550439	rs79004610	C	T	5105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.413;ClippingRankSum=0.000;DB;DP=1632;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.064;QD=3.17;ReadPosRankSum=2.532;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:1392,220:0.14:1612
chr7	100550442	.	C	T	6797.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DP=1609;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-5.522;QD=4.28;ReadPosRankSum=1.044;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1336,254:0.16:1590
chr7	100550443	.	A	G	1067.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DP=1592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.336;QD=0.68;ReadPosRankSum=0.981;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:1445,128:0.08:1573
chr7	100550447	.	C	T	5574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=1587;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.807;QD=3.56;ReadPosRankSum=1.206;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:1339,229:0.15:1568
chr7	100550452	.	A	T	5583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DP=1529;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.864;QD=3.70;ReadPosRankSum=1.363;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:1283,227:0.15:1510
chr7	100550462	rs372836845	C	T	395.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=1395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.483;QD=0.29;ReadPosRankSum=-2.507;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:1278,97:0.07:1375
chr7	100550463	.	T	G	21546.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.882;ClippingRankSum=0.000;DP=1326;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-5.457;QD=16.50;ReadPosRankSum=-1.590;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:810,496:0.38:1306
chr7	100550466	rs75319202	C	T	10620.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.156;ClippingRankSum=0.000;DB;DP=1295;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.085;QD=8.32;ReadPosRankSum=-0.736;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:966,310:0.24:1276
chr7	100550467	rs78312717	A	G	14586.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.540;ClippingRankSum=0.000;DB;DP=1285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.337;QD=11.52;ReadPosRankSum=-3.108;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:873,393:0.31:1266
chr7	100550473	rs77401364	G	A	13811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.761;ClippingRankSum=0.000;DB;DP=1255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.795;QD=11.96;ReadPosRankSum=-3.602;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:779,376:0.33:1155
chr7	100550478	rs79412130	C	T	12753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.088;ClippingRankSum=0.000;DB;DP=1206;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.384;QD=10.77;ReadPosRankSum=-0.132;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:828,356:0.30:1184
chr7	100550490	.	G	A	6931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DP=1061;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.353;QD=6.72;ReadPosRankSum=-1.375;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:798,234:0.23:1032
chr7	100550501	.	T	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.570;ClippingRankSum=0.000;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.546;QD=0.57;ReadPosRankSum=-2.697;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:876,91:0.09:967
chr7	100550505	rs74715834	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=925;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.943;QD=0.62;ReadPosRankSum=-2.400;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:838,75:0.08:913
chr7	100550507	rs139308151	C	T	601.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.968;QD=0.69;ReadPosRankSum=-3.034;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:800,76:0.09:876
chr7	100550508	.	A	T	6808.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.508;ClippingRankSum=0.000;DP=867;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-8.574;QD=9.43;ReadPosRankSum=-0.244;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:529,193:0.27:722
chr7	100550510	.	A	C	4730.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.520;ClippingRankSum=0.000;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.046;QD=6.37;ReadPosRankSum=-0.852;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:593,150:0.20:743
chr7	100550511	rs74435283	G	C	1688.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=1.973;QD=2.17;ReadPosRankSum=-1.983;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:688,89:0.11:777
chr7	100550514	rs78262970	T	C	2071.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.893;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-14.657;QD=2.61;ReadPosRankSum=1.809;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:695,100:0.13:795
chr7	100550515	.	T	A	3935.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=2.320;QD=5.04;ReadPosRankSum=-2.600;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:643,138:0.18:781
chr7	100550520	rs77013428	C	T	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.306;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-9.930;QD=1.19;ReadPosRankSum=-0.048;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:686,71:0.09:757
chr7	100550522	rs76664943	C	G	2429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.092;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-14.693;QD=3.30;ReadPosRankSum=1.116;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:633,104:0.14:737
chr7	100550544	rs75037819	A	C	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.906;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=7.459;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-13.009;QD=4.50;ReadPosRankSum=0.880;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:501,102:0.17:603
chr7	100550552	rs77957081	A	T	2605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.884;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=9.208;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-12.592;QD=4.46;ReadPosRankSum=2.408;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:488,96:0.16:584
chr7	100550562	rs78069287	G	A	2986.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.622;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=13.502;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-10.971;QD=5.57;ReadPosRankSum=-1.520;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:433,103:0.19:536
chr7	100550563	rs77561545	A	G	2221.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.351;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=7.739;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-6.873;QD=4.16;ReadPosRankSum=-2.722;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:449,85:0.16:534
chr7	100550564	rs75269566	C	T	3103.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.610;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=15.341;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-11.064;QD=5.89;ReadPosRankSum=-2.530;SOR=1.778;set=HC	GT:AD:AF:DP	0/1:424,103:0.20:527
chr7	100550568	rs78115301	T	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.708;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=12.322;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-6.136;QD=4.66;ReadPosRankSum=-5.172;SOR=1.690;set=HC	GT:AD:AF:DP	0/1:430,90:0.17:520
chr7	100550570	rs76035900	T	C	7708.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.523;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=15.487;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-7.614;QD=14.74;ReadPosRankSum=-2.565;SOR=1.486;set=HC	GT:AD:AF:DP	0/1:318,205:0.39:523
chr7	100550571	rs146166922	G	C	3992.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=9.801;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-6.797;QD=9.24;ReadPosRankSum=0.659;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:318,114:0.26:432
chr7	100550577	.	C	T	2899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DP=556;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.689;QD=5.25;ReadPosRankSum=3.165;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:450,102:0.18:552
chr7	100550583	rs71888665	AACCACC	A	2989.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=4.479;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-0.481;QD=5.38;ReadPosRankSum=1.581;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:454,102:0.18:556
chr7	100550589	rs80123018	C	G	521.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.833;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-5.233;QD=0.97;ReadPosRankSum=-3.460;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:487,49:0.09:536
chr7	100550595	rs80315860	T	C	709.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.064;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=8.657;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-4.227;QD=1.26;ReadPosRankSum=-4.042;SOR=1.854;set=HC	GT:AD:AF:DP	0/1:509,54:0.10:563
chr7	100550596	rs74991890	G	A	636.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.815;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=10.421;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-4.046;QD=1.12;ReadPosRankSum=-4.530;SOR=1.957;set=HC	GT:AD:AF:DP	0/1:511,57:0.10:568
chr7	100550601	rs79112841	C	A	3208.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=5.726;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.299;QD=5.51;ReadPosRankSum=3.591;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:475,107:0.18:582
chr7	100550602	rs80036331	T	A	6666.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.480;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=22.973;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.428;QD=11.40;ReadPosRankSum=-1.118;SOR=1.824;set=HC	GT:AD:AF:DP	0/1:408,177:0.30:585
chr7	100550604	rs74878158	C	A	3251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=4.388;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.529;QD=5.53;ReadPosRankSum=0.701;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:471,117:0.20:588
chr7	100551106	rs62483697	A	G	11521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=2143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=2.485;QD=5.63;ReadPosRankSum=0.659;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:1354,693:0.34:2047
chr7	100551220	rs79017193	G	C	9788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=1517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-1.834;QD=6.81;ReadPosRankSum=-0.222;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:902,536:0.37:1438
chr7	100551370	rs78124935	AG	TC	25804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=1981;ExcessHet=3.0103;FS=0.541;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.637;QD=13.49;ReadPosRankSum=0.909;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:1214,699:0.37:1913
chr7	100551376	rs75808610	C	A	27101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.456;ClippingRankSum=0.000;DB;DP=1960;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.241;QD=14.30;ReadPosRankSum=-0.167;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:1186,709:0.37:1895
chr7	100551390	rs77795035	T	A	27372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=1845;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.203;QD=15.16;ReadPosRankSum=0.737;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:1116,690:0.38:1806
chr7	100551392	rs75008337	CG	TA	26193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.551;ClippingRankSum=0.000;DB;DP=1827;ExcessHet=3.0103;FS=1.129;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.173;QD=14.65;ReadPosRankSum=-0.058;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:1093,695:0.39:1788
chr7	100551397	rs79748732	G	T	26159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;ClippingRankSum=0.000;DB;DP=1825;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.172;QD=14.61;ReadPosRankSum=0.467;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:1094,696:0.39:1790
chr7	100551400	rs75496565	G	A	26125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.669;ClippingRankSum=0.000;DB;DP=1815;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.176;QD=14.64;ReadPosRankSum=1.030;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:1092,692:0.39:1784
chr7	100551433	rs73398732	T	C	12152.77	.	AC=1;AF=0.500;AN=2;DB;DP=1824;set=Intersection	GT:AD:AF:DP	0/1:1024,766:0.43:1790
chr7	100551445	rs113821643	C	G	3905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=1783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.504;QD=2.21;ReadPosRankSum=-2.185;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:1412,356:0.20:1768
chr7	100551461	rs78826835	C	G	27819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=1707;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.154;QD=16.44;ReadPosRankSum=2.116;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:967,725:0.43:1692
chr7	100551471	rs78831742	T	C	28668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=1716;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.134;QD=16.87;ReadPosRankSum=0.830;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:957,742:0.44:1699
chr7	100551473	rs79233494	G	C	28507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;ClippingRankSum=0.000;DB;DP=1705;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.143;QD=16.91;ReadPosRankSum=1.334;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:956,730:0.43:1686
chr7	100551476	rs74460367	C	T	27810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=1715;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.151;QD=16.39;ReadPosRankSum=1.727;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:968,729:0.43:1697
chr7	100551502	rs28515787	A	C	10833.77	.	AC=1;AF=0.500;AN=2;DB;DP=1657;set=Intersection	GT:AD:AF:DP	0/1:1044,594:0.36:1638
chr7	100551533	rs112228251	G	T	3659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=1592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.166;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:1247,323:0.21:1570
chr7	100551565	rs73163757	AT	GC	24612.77	.	AC=1;AF=0.500;AN=2;DB;DP=1608;JOINED;set=Intersection	GT:AD:AF:DP	0/1:936,650:0.41:1586
chr7	100551578	rs78584246	T	G	23637.77	.	AC=1;AF=0.500;AN=2;DB;DP=1635;set=Intersection	GT:AD:AF:DP	0/1:954,653:0.41:1607
chr7	100551626	rs73714238	T	C	26425.77	.	AC=1;AF=0.500;AN=2;DB;DP=1413;set=Intersection	GT:AD:AF:DP	0/1:528,864:0.62:1392
chr7	100551637	rs112753297	C	CCAA	15709.73	.	AC=1;AF=0.500;AN=2;DB;DP=1407;set=Intersection	GT:AD:AF:DP	0/1:890,432:0.33:1322
chr7	100551646	rs77153975	A	G	15827.77	.	AC=1;AF=0.500;AN=2;DB;DP=1329;set=Intersection	GT:AD:AF:DP	0/1:876,435:0.33:1311
chr7	100551662	rs78684063	C	T	14385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.666;ClippingRankSum=0.000;DB;DP=1224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.697;QD=11.86;ReadPosRankSum=-0.020;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:818,395:0.33:1213
chr7	100551666	rs74318947	A	T	13915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;ClippingRankSum=0.000;DB;DP=1207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.688;QD=11.64;ReadPosRankSum=0.444;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:813,383:0.32:1196
chr7	100551687	rs73714240	T	C	14190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=1154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.717;QD=12.40;ReadPosRankSum=-0.937;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:757,387:0.34:1144
chr7	100551692	rs73714242	C	T	13883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=1115;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.726;QD=12.58;ReadPosRankSum=-1.316;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:724,380:0.34:1104
chr7	100551719	rs73714243	C	T	14553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.268;ClippingRankSum=0.000;DB;DP=1159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.742;QD=12.72;ReadPosRankSum=0.912;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:739,405:0.35:1144
chr7	100551729	rs73714244	C	T	14684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.808;ClippingRankSum=0.000;DB;DP=1203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.813;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:765,422:0.36:1187
chr7	100551773	rs73398734	C	A	22942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;ClippingRankSum=0.000;DB;DP=1554;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=-0.606;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:929,609:0.40:1538
chr7	100551778	rs73714247	G	A	24283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;ClippingRankSum=0.000;DB;DP=1603;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-1.023;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:947,639:0.40:1586
chr7	100551793	rs73398735	G	T	24935.77	.	AC=1;AF=0.500;AN=2;DB;DP=1758;set=Intersection	GT:AD:AF:DP	0/1:1026,715:0.41:1741
chr7	100551840	rs78273697	T	A	30840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.818;ClippingRankSum=0.000;DB;DP=1951;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.167;QD=16.00;ReadPosRankSum=2.265;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:1112,815:0.42:1927
chr7	100551842	rs75365561	CT	TC	31650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.129;ClippingRankSum=0.000;DB;DP=1937;ExcessHet=3.0103;FS=0.529;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.169;QD=16.54;ReadPosRankSum=2.671;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:1106,808:0.42:1914
chr7	100551849	rs77242346	A	T	31463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;ClippingRankSum=0.000;DB;DP=1957;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.134;QD=16.25;ReadPosRankSum=1.394;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:1090,846:0.44:1936
chr7	100551912	rs111656197	G	A	4238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=2087;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.175;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:1640,394:0.19:2034
chr7	100551997	rs112386500	G	T	4139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=2435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-1.448;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1965,434:0.18:2399
chr7	100552018	rs76249962	T	G	38552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=2347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=3.392;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:1307,1018:0.44:2325
chr7	100552018	.	TCC	GCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=1;MGOF=25;MMLQ=24;MQ=59.94;NF=249;NR=252;PP=2944;QD=20;SC=TCCAGTGTTCTCCACTACCAT;SbPval=0.49;Source=Platypus;TC=1195;TCF=603;TCR=592;TR=501;WE=100552028;WS=100552008;set=Platypus	GT:AD:AF:DP	1/0:694,501:0.42:1195
chr7	100552020	rs78680358	C	T	19450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=2287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=2.899;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:1276,983:0.44:2259
chr7	100552044	rs73714250	T	G	33870.77	.	AC=1;AF=0.500;AN=2;DB;DP=2142;set=Intersection	GT:AD:AF:DP	0/1:1206,921:0.43:2127
chr7	100552094	rs62483698	G	C	39231.77	.	AC=1;AF=0.500;AN=2;DB;DP=1918;set=Intersection	GT:AD:AF:DP	0/1:701,1200:0.63:1901
chr7	100552117	rs62483699	G	T	29260.77	.	AC=1;AF=0.500;AN=2;DB;DP=1865;set=Intersection	GT:AD:AF:DP	0/1:1018,825:0.45:1843
chr7	100552135	rs62483700	T	C	31197.77	.	AC=1;AF=0.500;AN=2;DB;DP=1897;set=Intersection	GT:AD:AF:DP	0/1:1013,874:0.46:1887
chr7	100552149	rs113329327	T	C	9400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=1906;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.970;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:1551,346:0.18:1897
chr7	100552160	rs112516377	C	G	9255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=1894;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=2.158;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:1545,339:0.18:1884
chr7	100552251	rs9691900	T	C	16303.77	.	AC=1;AF=0.500;AN=2;DB;DP=1654;set=Intersection	GT:AD:AF:DP	0/1:821,816:0.50:1637
chr7	100552311	rs12535515	C	T	18567.77	.	AC=1;AF=0.500;AN=2;DB;DP=1343;set=Intersection	GT:AD:AF:DP	0/1:774,561:0.42:1335
chr7	100552338	rs73398798	C	T	17832.77	.	AC=1;AF=0.500;AN=2;DB;DP=1169;set=Intersection	GT:AD:AF:DP	0/1:698,467:0.40:1165
chr7	100552358	rs73714254	C	G	15536.77	.	AC=1;AF=0.500;AN=2;DB;DP=1046;set=Intersection	GT:AD:AF:DP	0/1:641,403:0.39:1044
chr7	100552371	rs73714255	C	G	13908.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:608,362:0.37:970
chr7	100552384	rs75597914	A	G	13782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.479;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.483;QD=15.21;ReadPosRankSum=-0.094;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:549,357:0.39:906
chr7	100552390	rs73714257	T	C	13972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.442;QD=15.56;ReadPosRankSum=-0.655;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:537,361:0.40:898
chr7	100552412	rs73714259	T	C	14503.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:530,373:0.41:903
chr7	100552435	rs76244845	TC	AT	15573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DB;DP=934;ExcessHet=3.0103;FS=1.790;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.350;QD=16.80;ReadPosRankSum=-0.059;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:537,390:0.42:927
chr7	100552440	rs80290400	C	T	15080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.339;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.353;QD=15.87;ReadPosRankSum=0.433;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:551,399:0.42:950
chr7	100552535	rs73163758	G	A	26069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=2753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.061;QD=9.57;ReadPosRankSum=-0.200;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:1444,1280:0.47:2724
chr7	100552536	rs73163759	T	C	65635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=2783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.669;QD=23.85;ReadPosRankSum=1.627;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:853,1899:0.69:2752
chr7	100552549	rs73163760	C	A	29617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=3152;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.057;QD=9.51;ReadPosRankSum=0.568;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:1645,1471:0.47:3116
chr7	100552550	rs73163762	T	C	75246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=3183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.669;QD=23.91;ReadPosRankSum=1.801;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:975,2172:0.69:3147
chr7	100552640	rs112964636	A	C	12040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DB;DP=4824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.061;QD=2.59;ReadPosRankSum=-1.110;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:3632,1021:0.22:4653
chr7	100552644	rs2904850	C	A	112725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=4815;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.069;QD=24.24;ReadPosRankSum=1.055;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:1033,3617:0.78:4650
chr7	100552657	rs75471530	A	G	69215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=4743;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.995;QD=15.04;ReadPosRankSum=-0.111;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:2757,1846:0.40:4603
chr7	100552659	rs78182596	T	C	70341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DB;DP=4718;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-3.002;QD=15.35;ReadPosRankSum=-0.121;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:2751,1833:0.40:4584
chr7	100552673	rs200599465	C	T	12953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=4756;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-4.551;QD=2.79;ReadPosRankSum=-1.538;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:3604,1045:0.22:4649
chr7	100552675	rs73163764	C	T	66481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.428;ClippingRankSum=0.000;DB;DP=4771;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-3.099;QD=14.24;ReadPosRankSum=2.226;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:2873,1797:0.38:4670
chr7	100552711	rs75799835	T	A	64253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.590;ClippingRankSum=0.000;DB;DP=4631;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.809;QD=14.04;ReadPosRankSum=-0.097;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:2840,1736:0.38:4576
chr7	100552713	rs75130157	A	G	65657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.694;ClippingRankSum=0.000;DB;DP=4599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.811;QD=14.44;ReadPosRankSum=-0.059;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:2824,1722:0.38:4546
chr7	100552727	rs74529310	G	C	66508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;ClippingRankSum=0.000;DB;DP=4496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.766;QD=14.92;ReadPosRankSum=-2.899;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:2716,1742:0.39:4458
chr7	100552738	rs79874934	CA	TG	62420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;ClippingRankSum=0.000;DB;DP=4334;ExcessHet=3.0103;FS=0.531;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.802;QD=14.52;ReadPosRankSum=0.387;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:2660,1638:0.38:4298
chr7	100552788	rs73398800	C	T	25836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=3316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.614;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:1930,1357:0.41:3287
chr7	100552837	rs73714264	G	A	32425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=2305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.760;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1315,958:0.42:2273
chr7	100552854	rs73714265	G	A	29909.77	.	AC=1;AF=0.500;AN=2;DB;DP=1981;set=Intersection	GT:AD:AF:DP	0/1:1141,813:0.42:1954
chr7	100552867	rs73714266	T	C	36445.77	.	AC=1;AF=0.500;AN=2;DB;DP=1704;set=Intersection	GT:AD:AF:DP	0/1:605,1073:0.64:1678
chr7	100552915	rs2904852	A	C	40337.77	.	AC=2;AF=1.00;AN=2;DB;DP=1310;set=Intersection	GT:AD:AF:DP	1/1:0,1288:1.00:1288
chr7	100552978	rs73163765	T	C	19084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=0.423;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:591,504:0.46:1095
chr7	100552984	rs73163766	T	C	19468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=1083;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=0.079;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:581,499:0.46:1080
chr7	100553002	rs68094465	A	G	17902.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:561,485:0.46:1046
chr7	100553073	rs73714269	T	A	13317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.874;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:460,358:0.44:818
chr7	100553077	rs73714270	A	C	13059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.367;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:445,343:0.44:788
chr7	100553105	rs111809465	C	G	1389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.296;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:392,113:0.22:505
chr7	100553117	rs73400705	G	A	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:226,192:0.46:418
chr7	100555116	rs34281234	A	AT	1055.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=0.593;QD=6.77;ReadPosRankSum=2.135;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:70,86:0.55:156
chr7	100555400	rs139033136	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr7	100606332	.	ATTTT	A,ATTTTT	1564.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=1.268;MLEAC=1,1;MLEAF=0.500,0.500;MQ=52.63;MQRankSum=-2.618;QD=14.49;ReadPosRankSum=0.136;SOR=0.498;set=HC	GT:AD:AF:DP	1/2:21,52,35:0.48,0.32:108
chr7	100606918	rs4316092	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	100607615	rs2904860	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:115,51:0.31:166
chr7	100607640	.	G	GCT	6125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=0.446;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:138,144:0.51:282
chr7	100607642	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=28;MQ=60.0;NF=76;NR=25;PP=2962;QD=20;SC=TGACCTCTGCCCTCTTTCCCC;SbPval=0.61;Source=Platypus;TC=236;TCF=174;TCR=62;TR=101;WE=100607654;WS=100607632;set=Platypus	GT:AD:AF:DP	0/1:135,101:0.43:236
chr7	100607643	.	CTCT	C,CCT	6273.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=327;set=Intersection	GT:AF:DP	0/1:0.52:323
chr7	100607700	.	CAT	C	8578.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DP=859;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=1.217;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:602,243:0.29:845
chr7	100607702	rs368686714	T	C	1650.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.653;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:679,166:0.20:845
chr7	100607707	.	T	G	8906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DP=897;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.507;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:633,255:0.29:888
chr7	100607709	.	C	CCT	8946.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DP=918;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.613;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:648,260:0.29:908
chr7	100607851	rs6960854	C	G	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:275,246:0.47:521
chr7	100607871	rs6960868	C	T	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:206,178:0.46:384
chr7	100607903	rs6961167	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr7	100608154	rs10250885	G	A	4677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.135;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.641;QD=20.79;ReadPosRankSum=0.602;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:67,158:0.70:225
chr7	100608154	.	GGATAAGGGAGAG	AGATAAGGGAGAG,AGATGAGGCAGGC	1643	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=55;MMLQ=27;MQ=59.69;NF=100,16;NR=21,0;PP=1643,439;QD=13.8658777896;SC=TATTCAGGGGGGATAAGGGAG;SbPval=0.44;Source=Platypus;TC=188;TCF=157;TCR=31;TR=121,16;WE=100608174;WS=100608144;set=Platypus	GT:AF:DP	0/1:0.64:188
chr7	100608158	rs79221376	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.415;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=27.439;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.321;QD=3.68;ReadPosRankSum=-2.842;SOR=3.643;set=HC	GT:AD:AF:DP	0/1:212,39:0.16:251
chr7	100608162	rs79761591	G	C	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.120;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=36.779;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-2.313;QD=4.24;ReadPosRankSum=-2.754;SOR=4.025;set=HC	GT:AD:AF:DP	0/1:232,43:0.16:275
chr7	100608165	rs76431635	A	G	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=43.809;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.302;QD=4.69;ReadPosRankSum=-2.574;SOR=4.365;set=HC	GT:AD:AF:DP	0/1:251,47:0.16:298
chr7	100608166	rs75884804	G	C	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=53.409;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.189;QD=4.63;ReadPosRankSum=-3.425;SOR=4.666;set=HC	GT:AD:AF:DP	0/1:256,53:0.17:309
chr7	100608180	rs77646533	C	G	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=45.110;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.288;QD=4.40;ReadPosRankSum=-1.257;SOR=4.883;set=HC	GT:AD:AF:DP	0/1:358,68:0.16:426
chr7	100608188	.	C	CT	2132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.726;ClippingRankSum=0.000;DP=493;ExcessHet=3.0103;FS=51.099;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.228;QD=4.43;ReadPosRankSum=-1.684;SOR=5.323;set=HC	GT:AD:AF:DP	0/1:401,80:0.17:481
chr7	100608190	.	C	T	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.071;ClippingRankSum=0.000;DP=500;ExcessHet=3.0103;FS=51.255;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.253;QD=4.55;ReadPosRankSum=-0.967;SOR=5.340;set=HC	GT:AD:AF:DP	0/1:408,80:0.16:488
chr7	100608194	.	C	CGTCTGGG	2935.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.134;ClippingRankSum=0.000;DP=544;ExcessHet=3.0103;FS=54.114;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.275;QD=5.57;ReadPosRankSum=-0.410;SOR=5.560;set=HC	GT:AD:AF:DP	0/1:442,85:0.16:527
chr7	100608196	rs77373587	C	G	3499.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.064;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=48.813;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.116;QD=6.18;ReadPosRankSum=0.019;SOR=5.397;set=HC	GT:AD:AF:DP	0/1:463,103:0.18:566
chr7	100608197	.	A	AGGG	3629.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.764;ClippingRankSum=0.000;DP=602;ExcessHet=3.0103;FS=49.039;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.131;QD=6.22;ReadPosRankSum=0.214;SOR=5.473;set=HC	GT:AD:AF:DP	0/1:479,105:0.18:584
chr7	100608201	rs77005990	C	T	3755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.672;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=42.384;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.904;QD=5.95;ReadPosRankSum=-2.581;SOR=3.783;set=HC	GT:AD:AF:DP	0/1:495,136:0.22:631
chr7	100608247	rs73163788	T	C	16001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=1467;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.038;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:994,447:0.31:1441
chr7	100608255	rs79638688	C	G	17697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.584;ClippingRankSum=0.000;DB;DP=1801;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.98;ReadPosRankSum=5.003;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:1283,491:0.28:1774
chr7	100608268	rs141757611	C	CCTTAACCCCTTGAT	28117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.822;ClippingRankSum=0.000;DB;DP=2030;ExcessHet=3.0103;FS=6.783;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.06;ReadPosRankSum=3.902;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:1412,588:0.29:2000
chr7	100608370	rs73714276	A	C	31588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=1958;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=1.935;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:1035,861:0.45:1896
chr7	100608375	rs75592954	G	A	30944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=1798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=2.749;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:959,786:0.45:1745
chr7	100608406	rs77168191	AT	GC	17281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.282;ClippingRankSum=0.000;DB;DP=985;ExcessHet=3.0103;FS=2.598;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.225;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:517,451:0.47:968
chr7	100608411	rs79831534	C	T	16798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=0.188;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:490,425:0.46:915
chr7	100608416	rs77070494	C	T	15919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=0.152;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:462,397:0.46:859
chr7	100608419	rs79505270	CT	GG	14764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=1.191;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=-0.045;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:434,374:0.46:808
chr7	100608423	rs77841377	C	T	13379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.257;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=0.260;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:391,332:0.46:723
chr7	100608472	rs10251045	C	G	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	100608493	rs77278976	T	C	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.298;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.869;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:111,65:0.37:176
chr7	100608498	rs77518728	A	C	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.304;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-0.299;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:98,60:0.38:158
chr7	100608502	rs76981580	T	C	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.650;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:96,55:0.36:151
chr7	100608572	rs10251414	G	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:100,61:0.38:161
chr7	100608573	rs10251415	G	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:103,58:0.36:161
chr7	100608662	rs74929976	A	G	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=1052;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.061;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:839,196:0.19:1035
chr7	100608710	rs62483706	A	C	14240.77	.	AC=1;AF=0.500;AN=2;DB;DP=1605;set=Intersection	GT:AD:AF:DP	0/1:837,735:0.47:1572
chr7	100608778	rs73163792	TC	CT	25160.77	.	AC=1;AF=0.500;AN=2;DB;DP=1519;JOINED;set=Intersection	GT:AD:AF:DP	0/1:811,665:0.45:1476
chr7	100608823	rs35790618	G	T	4941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=1250;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=1.266;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:899,333:0.27:1232
chr7	100608826	rs73163794	C	G	17022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=1221;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=-0.088;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:652,554:0.46:1206
chr7	100608868	rs67377634	A	G	12457.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:404,371:0.48:775
chr7	100608884	rs73163797	G	A	10600.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:306,276:0.47:582
chr7	100608912	rs73163798	A	G	6077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=0.977;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:163,175:0.52:338
chr7	100608920	rs2904863	T	C	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.851;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:227,68:0.23:295
chr7	100608929	rs80040741	G	T	5118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.42;ReadPosRankSum=-1.693;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:113,126:0.53:239
chr7	100608953	rs78404383	TA	CT	2744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.495;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=19.995;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-1.046;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:75,62:0.45:137
chr7	100608958	rs76888130	T	C	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=24.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.640;SOR=2.654;set=HC	GT:AD:AF:DP	0/1:66,56:0.46:122
chr7	100608961	rs74773493	C	T	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.499;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=26.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=-2.121;SOR=2.845;set=HC	GT:AD:AF:DP	0/1:61,54:0.47:115
chr7	100608964	rs77850164	G	T	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=26.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-2.343;SOR=2.814;set=HC	GT:AD:AF:DP	0/1:60,52:0.46:112
chr7	100609486	rs62483707	C	G	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr7	100609966	rs10274451	T	C	20320.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,754:1.00:754
chr7	100609987	rs10274460	T	C	33502.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:0,819:1.00:819
chr7	100610026	rs10229209	A	C	25339.77	.	AC=2;AF=1.00;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	1/1:2,945:1.00:947
chr7	100610069	rs10258821	C	T	20719.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:0,793:1.00:793
chr7	100610299	rs112809460	C	A	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;ClippingRankSum=0.000;DB;DP=1838;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.586;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:1523,298:0.16:1821
chr7	100612766	rs71901679	CTGTCCAGGCACTT	C	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:59,8:0.12:67
chr7	100612786	rs73168325	G	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:67,16:0.19:83
chr7	100612839	rs76449674	A	G	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=3.894;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=9.75;ReadPosRankSum=2.304;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:162,79:0.33:241
chr7	100612842	rs79514982	T	C	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.119;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=4.587;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=9.35;ReadPosRankSum=2.610;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:170,83:0.33:253
chr7	100612865	rs78097765	C	T	4607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=12.80;ReadPosRankSum=3.372;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:235,125:0.35:360
chr7	100612869	rs74554402	G	A	4881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=12.91;ReadPosRankSum=3.047;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:244,134:0.35:378
chr7	100612875	rs75162633	C	T	5032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=12.55;ReadPosRankSum=2.662;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:257,144:0.36:401
chr7	100612898	rs73168327	T	C	5973.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:280,183:0.40:463
chr7	100612945	rs76619309	C	T	5846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.070;QD=11.14;ReadPosRankSum=2.649;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:358,167:0.32:525
chr7	100612952	rs79881008	G	A	5802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.089;QD=11.18;ReadPosRankSum=2.862;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:356,163:0.31:519
chr7	100612955	rs150485202	A	ACTG	5754.73	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:352,158:0.31:510
chr7	100612961	rs78487486	G	C	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.127;QD=10.82;ReadPosRankSum=3.217;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:344,152:0.31:496
chr7	100612969	rs73168328	A	G	5216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.085;QD=10.73;ReadPosRankSum=1.620;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:333,153:0.31:486
chr7	100612996	rs76589634	A	G	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:275,131:0.32:406
chr7	100613010	rs80354726	T	C	3819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-2.457;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:234,105:0.31:339
chr7	100613011	rs79331440	G	A	3741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-2.713;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:230,104:0.31:334
chr7	100613018	rs78041688	A	C	3259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-2.421;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:216,90:0.29:306
chr7	100613027	rs73168330	T	C	2825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-2.721;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:198,79:0.29:277
chr7	100613059	rs66842488	GCCT	G	883.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:115,32:0.22:147
chr7	100613107	rs73168333	G	A	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.572;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr7	100613112	rs75250895	G	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=1.325;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr7	100613127	rs73168334	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.309;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	100615311	rs79784813	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=-1.417;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	100615313	rs79548447	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.842;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr7	100615321	rs75376427	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-1.184;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr7	100615353	rs73168339	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.651;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr7	100615359	rs73168341	A	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.218;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:61,22:0.27:83
chr7	100615377	rs33957279	AC	A	774.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:76,25:0.25:101
chr7	100615387	rs75466554	C	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:78,26:0.25:104
chr7	100615445	rs5021607	A	G	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.783;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:114,41:0.26:155
chr7	100615449	rs5021606	C	G	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.873;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr7	100615453	rs5021605	T	C	1484.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.597;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr7	100615454	rs5021604	G	C	1484.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.298;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:111,44:0.28:155
chr7	100615458	rs5021603	A	C	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.188;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:109,44:0.29:153
chr7	100615460	rs5021602	A	G	1556.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.242;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:109,44:0.29:153
chr7	100615461	rs5021601	T	A	1556.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.256;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:107,43:0.29:150
chr7	100615477	rs5021600	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:103,41:0.28:144
chr7	100615494	rs33959976	GTA	G	1275.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:104,38:0.27:142
chr7	100615500	rs77817912	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.358;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr7	100615503	rs33984975	CAG	C	1176.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:96,35:0.27:131
chr7	100615521	rs79951460	T	C	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=2.138;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr7	100615525	rs76946448	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=1.442;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:69,28:0.29:97
chr7	100615531	rs79277318	T	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.169;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr7	100615533	rs75698243	C	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.912;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr7	100615570	rs73168342	T	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.347;QD=10.85;ReadPosRankSum=0.472;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr7	100615580	rs75806374	T	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.197;QD=13.47;ReadPosRankSum=-0.374;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr7	100615583	rs75125684	T	C	496.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.178;QD=15.05;ReadPosRankSum=-0.406;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr7	100615584	rs76813732	G	A	499.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.145;QD=15.62;ReadPosRankSum=-0.768;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	100615615	rs73168345	T	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.508;QD=7.18;ReadPosRankSum=-1.097;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr7	100615625	rs76422948	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.967;QD=9.65;ReadPosRankSum=-2.744;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	100615630	.	CTCTCCTTCCCTAGAGGATCCCAGTTCTCTCCACCAGCGCT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.967;QD=8.89;ReadPosRankSum=-2.744;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	100616124	rs74811797	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.475;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-5.685;QD=0.42;ReadPosRankSum=1.226;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:97,6:0.06:103
chr7	100616133	rs79762862	A	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.879;QD=1.34;ReadPosRankSum=-0.813;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:114,10:0.08:124
chr7	100616140	rs78186722	G	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-5.309;QD=1.68;ReadPosRankSum=-1.967;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:121,13:0.10:134
chr7	100616146	rs79946603	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-5.281;QD=1.22;ReadPosRankSum=-1.964;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:129,14:0.10:143
chr7	100616149	rs75858772	T	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-5.256;QD=0.91;ReadPosRankSum=-1.854;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:137,15:0.10:152
chr7	100616151	rs78669523	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.455;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-5.407;QD=0.84;ReadPosRankSum=-1.546;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:145,15:0.09:160
chr7	100616181	rs76074645	C	A	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.239;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.889;QD=1.81;ReadPosRankSum=-1.236;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:194,23:0.11:217
chr7	100616185	rs79851456	CA	TG	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.182;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=8.299;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.767;QD=2.19;ReadPosRankSum=-1.439;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:201,26:0.11:227
chr7	100616195	rs77180957	GC	CT	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=4.927;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.665;QD=2.50;ReadPosRankSum=-0.910;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:208,29:0.12:237
chr7	100616199	rs78022349	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=4.870;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.677;QD=2.17;ReadPosRankSum=-0.225;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:217,30:0.12:247
chr7	100616277	rs117288840	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=27.598;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.536;QD=2.68;ReadPosRankSum=-2.338;SOR=2.357;set=HC	GT:AD:AF:DP	0/1:219,35:0.14:254
chr7	100616279	.	C	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=27.821;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.504;QD=2.70;ReadPosRankSum=-2.435;SOR=2.354;set=HC	GT:AD:AF:DP	0/1:215,35:0.14:250
chr7	100616288	rs201235128	G	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=25.338;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-3.632;QD=2.85;ReadPosRankSum=-1.318;SOR=2.281;set=HC	GT:AD:AF:DP	0/1:198,30:0.13:228
chr7	100616310	rs199943216	G	C	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=22.063;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.860;QD=2.00;ReadPosRankSum=1.399;SOR=2.273;set=HC	GT:AD:AF:DP	0/1:164,22:0.12:186
chr7	100616313	rs200896810	T	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=21.952;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.801;QD=2.00;ReadPosRankSum=0.816;SOR=2.275;set=HC	GT:AD:AF:DP	0/1:159,22:0.12:181
chr7	100616320	rs200695576	G	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=20.260;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.803;QD=2.22;ReadPosRankSum=-0.030;SOR=2.162;set=HC	GT:AD:AF:DP	0/1:152,21:0.12:173
chr7	100616332	rs369342199	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=16.618;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-3.784;QD=1.99;ReadPosRankSum=-0.925;SOR=1.786;set=HC	GT:AD:AF:DP	0/1:129,18:0.12:147
chr7	100616336	.	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=18.139;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-3.919;QD=2.21;ReadPosRankSum=-0.836;SOR=1.983;set=HC	GT:AD:AF:DP	0/1:123,16:0.12:139
chr7	100616338	.	A	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=18.318;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-3.903;QD=1.96;ReadPosRankSum=-1.479;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:122,16:0.12:138
chr7	100616344	.	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=18.779;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-3.790;QD=2.18;ReadPosRankSum=-2.536;SOR=1.971;set=HC	GT:AD:AF:DP	0/1:115,16:0.12:131
chr7	100624718	rs4363124	G	C	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr7	100634476	rs6980143	C	G	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:116,182:0.61:298
chr7	100634640	rs1791	T	G	14445.77	.	AC=1;AF=0.500;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	0/1:559,708:0.56:1267
chr7	100634964	rs4370452	C	A	15655.77	.	AC=1;AF=0.500;AN=2;DB;DP=998;set=Intersection	GT:AD:AF:DP	0/1:284,705:0.71:989
chr7	100635375	rs10808115	A	C	18210.77	.	AC=1;AF=0.500;AN=2;DB;DP=1132;set=Intersection	GT:AD:AF:DP	0/1:278,834:0.75:1112
chr7	100635591	rs10953312	C	A	7206.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:84,295:0.78:379
chr7	100635661	rs10953313	T	C	33307.77	.	AC=1;AF=0.500;AN=2;DB;DP=1127;set=Intersection	GT:AD:AF:DP	0/1:308,806:0.72:1114
chr7	100635679	rs10953314	C	G	36505.77	.	AC=1;AF=0.500;AN=2;DB;DP=1398;set=Intersection	GT:AD:AF:DP	0/1:386,985:0.72:1371
chr7	100647819	rs11766024	C	T	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:154,210:0.58:364
chr7	100647875	rs11766048	C	A	5706.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:178,259:0.59:437
chr7	100647920	rs11772963	A	C	7651.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:245,358:0.59:603
chr7	100648029	rs10953315	G	A	8108.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:283,386:0.58:669
chr7	100648117	rs11766125	C	G	7721.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:273,364:0.57:637
chr7	100651855	rs12532750	A	G	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.472;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:86,157:0.65:243
chr7	100652317	rs12540832	T	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr7	100656003	rs3924886	G	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr7	100658717	rs10229453	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr7	100675976	rs56103274	G	A	19242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=1652;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.856;QD=11.98;ReadPosRankSum=-2.886;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:680,926:0.58:1606
chr7	100679902	rs55974941	A	G	24101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=1940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=2.262;QD=12.53;ReadPosRankSum=0.653;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:797,1127:0.59:1924
chr7	100681762	rs10953316	A	G	24506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=1962;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=2.921;QD=12.68;ReadPosRankSum=0.359;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:770,1163:0.60:1933
chr7	100684675	rs73402901	C	T	25282.77	.	AC=1;AF=0.500;AN=2;DB;DP=2087;set=Intersection	GT:AD:AF:DP	0/1:874,1188:0.58:2062
chr7	100692341	rs4515470	C	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	100692680	rs10246021	T	G	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:126,195:0.61:321
chr7	100694854	rs67328257	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr7	100695058	rs6966570	T	C	12411.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr7	100731505	rs4524722	C	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	100731748	rs61730718	T	G	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:181,135:0.43:316
chr7	100731829	rs6948536	T	C	15160.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr7	100731896	rs61730716	T	C	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:431,245:0.36:676
chr7	100775087	rs143613360	A	AAAC	2728.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,64:0.94:68
chr7	100780176	rs2227694	A	G	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	100780846	rs2227695	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr7	100800131	rs4727481	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	100800635	rs2074686	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr7	100803614	rs2074683	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:86,104:0.55:190
chr7	100803710	rs2074684	C	T	9838.77	.	AC=1;AF=0.500;AN=2;DB;DP=1435;set=Intersection	GT:AD:AF:DP	0/1:878,536:0.38:1414
chr7	100804140	rs1048303	C	T	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:123,118:0.49:241
chr7	100804240	rs113505007	T	TACCTCC	852.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr7	100816527	rs2009973	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	100817901	rs34985488	A	G	6610.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:712,377:0.35:1089
chr7	100818193	rs2015923	G	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	100841389	rs2158612	A	C	8621.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr7	100841695	rs111809654	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr7	100841863	rs3735337	T	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	100844011	rs12674140	C	T	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:137,89:0.39:226
chr7	100845051	rs73408451	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:139,76:0.35:215
chr7	100845660	rs72181952	ACTCTCCTC	A	5598.73	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:278,158:0.36:436
chr7	100849804	rs4729670	G	A	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	100850048	rs4729671	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	100853173	rs1468358	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	100858293	rs77576173	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr7	100858517	rs73408462	C	T	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=15.22;ReadPosRankSum=0.275;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:31,67:0.68:98
chr7	100860401	rs28361887	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	100860636	rs1056678	T	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-0.098;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr7	100861213	rs17319250	T	C	6908.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:212,338:0.61:550
chr7	100861452	rs11769624	T	C	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:131,173:0.57:304
chr7	100861476	rs58033606	A	G	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:156,206:0.57:362
chr7	100865847	rs10953329	T	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	100865866	rs74662330	C	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr7	100875772	rs1047319	T	G	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:169,242:0.59:411
chr7	100876049	.	C	CG	4521.73	.	AC=1;AF=0.500;AN=2;DP=311;set=Intersection	GT:AD:AF:DP	0/1:119,177:0.60:296
chr7	100876093	rs145036902	G	T	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:149,252:0.63:401
chr7	100877456	rs2302428	T	C	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	100883019	rs146665792	A	AACAGGGAAAGG	2473.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:198,127:0.39:325
chr7	100883228	rs76485948	A	G	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:134,78:0.37:212
chr7	100887503	rs59184889	G	GC	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:102,33:0.24:135
chr7	100894973	rs6979867	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr7	100895060	rs6961873	T	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:176,101:0.36:277
chr7	100954088	rs114395079	T	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,76:0.67:113
chr7	100954270	.	ATT	A	109.73	.	AC=1;AF=0.500;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;QD=12.19;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr7	100959986	rs34048830	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr7	100960006	rs34579827	A	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr7	100962451	rs34170365	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr7	100965096	rs11369267	A	AG	6307.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr7	100965144	rs71559403	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr7	101006216	rs4989271	G	C	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=2.119;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	101006223	rs4989270	C	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.25;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	101006230	rs4989269	T	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	101006233	rs4989268	C	T	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	101006376	rs4989267	C	T	14028.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	101006382	rs4989266	C	T	14028.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr7	101006488	rs4989265	C	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	101090831	rs17135418	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr7	101123749	rs36085186	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	101126347	rs34682212	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	101126480	.	C	CT,CTT	1513.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=-0.494;QD=16.28;ReadPosRankSum=1.276;SOR=0.832;set=HC	GT:AD:AF:DP	1/2:10,56,27:0.60,0.29:93
chr7	101126511	rs35677699	C	T	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	101126604	rs28693638	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	101176505	rs1476655	G	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	101176530	rs62465091	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	101183108	rs6465817	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr7	101188710	rs147296294	C	G	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:124,202:0.62:326
chr7	101188852	rs9886175	T	C	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	101192542	rs57977430	G	A	12056.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=-0.821;SOR=0.478;set=HC	GT:AD:AF:DP	1/1:1,464:1.00:465
chr7	101194424	rs17135626	C	T	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	101194461	rs73715304	C	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr7	101196488	rs12674244	T	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	101196688	rs13235234	C	T	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	101196756	rs3800980	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	101199257	rs4729728	G	A	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	101200669	rs36008849	A	AG	23696.73	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr7	101200727	rs17393069	G	A	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:191,211:0.52:402
chr7	101200835	rs7809926	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	101256833	rs2240389	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:312,150:0.32:462
chr7	101257075	rs2240390	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:89,38:0.30:127
chr7	101265350	rs4263675	T	C	8641.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:3,345:0.99:348
chr7	101267419	rs77240855	C	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:152,77:0.34:229
chr7	101272465	rs848644	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	101459161	rs28650922	T	C	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	101559302	rs10231075	C	G	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	101671585	rs448877	A	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	101713590	rs377612	T	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	101713859	rs73405992	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr7	101740606	rs1637257	T	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.440;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	101740610	rs1734879	C	A	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.454;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	101740827	rs10638510	T	TTC	5559.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=42.44;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	101747575	rs201480	A	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	101747593	.	G	GT	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.779;QD=5.29;ReadPosRankSum=1.836;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:74,54:0.42:128
chr7	101754865	rs201493	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	101755060	rs9655774	A	G	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:160,118:0.42:278
chr7	101758584	rs201501	G	A	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:342,188:0.35:530
chr7	101801920	rs57634989	C	A	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr7	101821970	.	A	AG	1376.73	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,59:0.30:194
chr7	101833044	rs17135077	C	T	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.655;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:52,61:0.54:113
chr7	101837149	rs11540899	G	A	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:124,202:0.62:326
chr7	101838941	rs74566154	G	A	4334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-0.023;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:154,210:0.58:364
chr7	101840640	rs80150170	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr7	101843536	rs34285499	A	AT	3126.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:6,154:0.96:160
chr7	101844851	rs60987662	A	G	20703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=1866;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.179;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:830,1015:0.55:1845
chr7	101870599	rs430841	A	G	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	101870888	rs146753347	G	A	12422.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:325,580:0.64:905
chr7	101877227	rs78876017	G	A	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr7	101916647	rs813000	A	G	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:100,160:0.62:260
chr7	101917647	rs712839	A	G	5790.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:218,277:0.56:495
chr7	101917755	rs73712453	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr7	101923315	rs57030737	T	TC	14612.73	.	AC=1;AF=0.500;AN=2;DB;DP=987;set=Intersection	GT:AD:AF:DP	0/1:450,511:0.53:961
chr7	101925356	rs60275604	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr7	101926409	.	G	T	6245.77	.	AC=1;AF=0.500;AN=2;DP=918;set=Intersection	GT:AD:AF:DP	0/1:558,343:0.38:901
chr7	101928495	rs803074	G	C	9762.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:370,469:0.56:839
chr7	101936464	.	C	CT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=10.536;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.722;QD=2.91;ReadPosRankSum=0.115;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr7	101953534	rs809120	T	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	101954412	rs4729780	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr7	101955936	rs2960261	A	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-0.289;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr7	101955971	rs185755952	T	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	101955975	rs2960260	A	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr7	101956210	.	GA	G	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.600;QD=3.42;ReadPosRankSum=-3.109;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	101956226	.	A	G	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.750;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.202;QD=8.75;ReadPosRankSum=0.234;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	101956323	rs73402330	A	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:173,103:0.37:276
chr7	101961027	rs77842720	C	T	4480.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:137,207:0.60:344
chr7	101962247	rs2960257	C	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr7	102036769	rs56992893	CGGAGACTGCGTATGCG	C	1204.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	102038153	rs72104665	CTG	C	4431.73	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:141,185:0.57:326
chr7	102045078	rs79339832	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:146,63:0.30:209
chr7	102046070	rs6971258	T	A	607.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	102046359	rs6955864	G	C	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	102063363	rs143532608	GGAAACATCC	G	3834.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	102063527	rs7384395	G	C	13008.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	102063567	.	C	CT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-3.406;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:164,34:0.17:198
chr7	102065322	rs1983476	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	102086891	rs12672132	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	102087202	rs1129271	T	C	22963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=1910;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=1.170;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:770,1118:0.59:1888
chr7	102106050	rs73712497	C	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:74,111:0.60:185
chr7	102108705	rs77974347	C	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:297,173:0.37:470
chr7	102112634	rs77848505	T	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr7	102113089	rs10250026	G	A	29342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=1289;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.00;ReadPosRankSum=0.110;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:535,741:0.58:1276
chr7	102113093	rs3800988	T	C	29445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=1307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.77;ReadPosRankSum=-0.104;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:540,753:0.58:1293
chr7	102113191	rs10249943	C	T	12424.77	.	AC=1;AF=0.500;AN=2;DB;DP=1034;set=Intersection	GT:AD:AF:DP	0/1:417,587:0.58:1004
chr7	102113333	rs116498858	G	A	16851.77	.	AC=1;AF=0.500;AN=2;DB;DP=1301;set=Intersection	GT:AD:AF:DP	0/1:484,796:0.62:1280
chr7	102113953	.	G	GACACGTCGGTGTCAGGGTGAGGGGTGGCCA	1695.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	102114304	rs113268416	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	102114998	rs142430986	G	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:72,147:0.67:219
chr7	102136550	rs77782294	G	A	8666.77	.	AC=1;AF=0.500;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	0/1:517,362:0.41:879
chr7	102158233	.	CA	C	1006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=8.484;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=3.980;QD=25.81;ReadPosRankSum=-2.970;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr7	102178770	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=51.87;MQRankSum=-2.324;QD=9.88;ReadPosRankSum=-0.394;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	102180360	.	G	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=11.491;MLEAC=1;MLEAF=0.500;MQ=38.58;MQRankSum=0.488;QD=17.25;ReadPosRankSum=-3.424;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	102235692	.	G	GCT	223.77	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.39;QD=37.29;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	102246500	rs144574884	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.14;MQRankSum=-1.599;QD=1.77;ReadPosRankSum=2.766;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr7	102257216	.	T	G	167.80	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.30;QD=23.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	102277851	rs375006180	AT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.56;MQRankSum=-1.224;QD=3.36;ReadPosRankSum=0.914;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	102279670	.	A	C	9175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-14.582;QD=11.22;ReadPosRankSum=2.689;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:364,454:0.56:818
chr7	102343967	rs4729850	A	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	102389833	rs28695887	G	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	102398410	rs199537059	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-7.151;QD=0.31;ReadPosRankSum=0.941;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr7	102462636	rs10279449	T	C	13919.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr7	102518795	rs73408209	A	G	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:192,126:0.40:318
chr7	102574999	rs3832497	TGAA	T	6973.73	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:320,193:0.38:513
chr7	102616469	rs2228687	G	A	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.988;QD=4.77;ReadPosRankSum=-4.767;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:300,127:0.30:427
chr7	102616515	rs2228686	G	A	11010.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:265,514:0.66:779
chr7	102668001	rs7805950	A	C	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	102722516	rs4729869	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,127:0.60:213
chr7	102723513	rs28482805	G	A	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr7	102737573	rs111774958	C	T	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:65,107:0.62:172
chr7	102738862	rs14029	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.90;MQRankSum=-2.348;QD=10.38;ReadPosRankSum=-0.299;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	102825871	rs4317507	T	C	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr7	102825987	.	G	GA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-1.320;QD=0.89;ReadPosRankSum=1.341;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:220,55:0.20:275
chr7	102874374	rs146142613	A	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr7	102883362	rs10271013	C	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	102883603	rs112901963	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.72;ReadPosRankSum=-0.732;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	102898221	rs376549563	CATA	C	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-2.194;QD=29.46;ReadPosRankSum=-0.301;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr7	102915864	rs143280997	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr7	102920504	rs181024783	C	T	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:87,144:0.62:231
chr7	102939019	rs62622397	T	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr7	102949633	rs10046531	G	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	102953607	rs112905186	TGTG	T	326.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr7	102953621	rs2878	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	102961209	rs72437079	CAT	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-0.000;QD=29.97;ReadPosRankSum=-0.210;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr7	102961239	rs72369502	CTG	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=2.163;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	102961277	.	CTT	C	639.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=0.551;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr7	102967731	.	GA	G	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-2.176;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr7	103006466	rs28605237	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr7	103007949	rs4520097	A	C	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	103015123	rs72245175	GT	G	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-0.841;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr7	103017132	rs66928926	CAGA	C	1652.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	103017148	rs72655393	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.730;QD=5.62;ReadPosRankSum=1.810;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr7	103018016	rs10273883	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	103019613	rs12705120	A	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	103021039	rs115302859	C	T	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:247,164:0.40:411
chr7	103021040	rs72655395	G	A	5023.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:166,242:0.59:408
chr7	103029947	rs72655391	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr7	103031926	rs74584081	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	103033573	rs13240456	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	103038546	rs75861002	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr7	103051861	rs113889101	C	T	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:264,174:0.40:438
chr7	103053435	rs7779997	A	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	103123458	rs115105042	G	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:63,122:0.66:185
chr7	103124207	rs1062831	T	C	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:318,184:0.37:502
chr7	103130238	rs78218774	G	A	6971.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:244,339:0.58:583
chr7	103130403	rs736707	A	G	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	103132301	.	TCTCACACA	T	123.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr7	103132303	rs71937915	TCACACA	T	87.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.255;QD=1.75;ReadPosRankSum=4.764;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr7	103132337	.	ACACAC	A	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.894;QD=3.51;ReadPosRankSum=0.139;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr7	103132503	rs79193208	G	C	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.748;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:148,117:0.44:265
chr7	103132548	rs115974676	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr7	103136102	rs2528873	C	A	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:132,167:0.56:299
chr7	103138517	rs2711885	C	G	10266.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr7	103141147	rs13232021	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr7	103141437	rs13235135	A	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr7	103155665	rs115640958	C	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:203,89:0.30:292
chr7	103155705	rs2229864	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:212,117:0.36:329
chr7	103155944	rs2528862	C	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	103155951	rs78832383	A	AAAG	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	103155977	rs2528863	A	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	103159633	rs3779521	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr7	103162370	rs10282605	C	T	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	103162414	rs115915726	A	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:114,80:0.41:194
chr7	103175965	rs362706	C	T	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	103179386	rs116579072	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	103180918	rs79610318	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:122,52:0.30:174
chr7	103181016	rs2075044	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	103185877	rs362719	C	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	103198251	rs6964157	C	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.28;ReadPosRankSum=-1.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	103202406	rs34635569	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.454;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	103205617	rs362725	A	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	103206001	rs35268159	G	GA	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.536;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr7	103207234	rs362726	T	C	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.546;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:204,126:0.38:330
chr7	103251983	rs10673432	A	AT,ATT	1453.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.894;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-1.824;SOR=0.203;set=HC	GT:AD:AF:DP	1/2:8,26,44:0.33,0.56:78
chr7	103294417	rs74460521	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr7	103322730	rs77386111	G	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:202,136:0.40:338
chr7	103363675	rs114681778	A	G	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr7	103389954	rs607755	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr7	103393685	rs78148514	A	C	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:228,187:0.45:415
chr7	103557697	rs711443	A	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	103629803	.	T	TGCCGCC	4792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.244;QD=26.33;ReadPosRankSum=1.333;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:60,122:0.67:182
chr7	103801444	rs10487187	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	103801654	rs2307401	T	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr7	103801786	rs17159629	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr7	103807447	rs17159713	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	103809007	rs2307409	A	G	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-0.666;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:44,69:0.61:113
chr7	103824667	rs7807228	A	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr7	103824724	rs11384924	T	TA	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	103828643	rs34643155	T	TAC	1091.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr7	103828665	.	C	CAT	338	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=14;NR=5;PP=338;QD=18.0526315789;SC=CACACACACACATATATATAT;SbPval=0.93;Source=Platypus;TC=61;TCF=35;TCR=26;TR=19;WE=103828675;WS=103828655;set=Platypus	GT:AD:AF:DP	0/1:42,19:0.31:61
chr7	103828667	rs3079580	T	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr7	103835732	rs2307400	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr7	103838112	rs59290626	C	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	103844557	rs2245659	T	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	103848094	rs2075217	T	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	103848102	rs971813	C	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	103848133	rs10953406	C	G	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	103848413	rs2075218	G	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	103969194	rs71794813	CAGGAGG	C	4704.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	103969365	rs74583671	C	T	5556.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:556,315:0.36:871
chr7	104110392	rs4727601	C	T	11610.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	104110406	rs6949376	C	G	7199.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:128,204:0.61:332
chr7	104110415	rs10216054	G	A	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:232,145:0.38:377
chr7	104263425	rs1073012	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr7	104263426	rs142705687	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr7	104377453	rs4236573	A	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr7	104546765	rs74700377	A	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr7	104681214	rs10264273	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	104704314	rs7805792	G	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	104704403	rs7805682	C	T	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:146,140:0.49:286
chr7	104707360	rs12705297	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	104713915	rs999895	T	C	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	104715018	rs9641341	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	104717517	rs2240455	C	T	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr7	104742054	rs11976329	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	104745818	rs2299298	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	104746522	rs11340728	AT	A	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	104748407	rs11399039	G	GT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.756;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr7	104751419	rs2299299	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	104754047	.	CTT	C,CT	79	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.4451,0.5549;HP=15;HapScore=3;MGOF=16;MMLQ=24;MQ=60.0;NF=7,7;NR=1,1;PP=5,79;QD=1.125;SC=GCTGTATGATCTTTTTTTTTT;SbPval=0.65;Source=Platypus;TC=8;TCF=7;TCR=1;TR=8,8;WE=104754056;WS=104754037;set=Platypus	GT:AF:DP	0/1:1.00:8
chr7	104767295	rs3815256	A	G	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=1.832;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	104801244	rs74899150	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	104844416	rs34581245	CA	C	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.566;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	104845124	rs2237611	A	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,55:0.50:110
chr7	104845964	.	TCACACACACACACACACACACACACACA	T,TCACACACACACACACA	1801.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=130;set=Intersection	GT:AF:DP	1/2:0.53,0.40:68
chr7	104845994	.	A	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.876;QD=2.67;ReadPosRankSum=3.201;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr7	105112489	rs818477	C	A	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=2.702;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:43,40:0.48:83
chr7	105122891	rs57080279	TA	T	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.868;QD=9.51;ReadPosRankSum=-0.230;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,44:0.79:56
chr7	105137256	rs114820069	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr7	105146359	rs818471	C	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	105146593	rs11421080	A	AT	6214.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	105172685	rs818620	G	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	105172739	rs75696096	G	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr7	105173029	rs818621	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	105176896	rs1721490	G	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	105187673	rs148050825	C	T	8359.77	.	AC=1;AF=0.500;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	0/1:445,423:0.49:868
chr7	105204136	rs141382811	T	TA	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.782;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	105205656	rs818624	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	105205941	rs860182	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.338;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:45,27:0.38:72
chr7	105207749	rs36058979	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr7	105221854	rs192637049	G	A	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:247,205:0.45:452
chr7	105221923	rs116753032	C	T	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:108,129:0.54:237
chr7	105222581	rs58194204	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr7	105222738	rs57492756	A	G	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:204,191:0.48:395
chr7	105250824	rs10216257	G	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr7	105250904	rs10215543	AG	GA	4801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.059;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.26;ReadPosRankSum=-0.634;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:139,124:0.47:263
chr7	105251091	rs114968298	A	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr7	105254801	rs150182467	AGAG	A	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.055;QD=1.09;ReadPosRankSum=-0.348;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:166,18:0.10:184
chr7	105516073	rs3835024	A	AC	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.88;ReadPosRankSum=-1.637;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	105621512	rs193795	G	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:182,138:0.43:320
chr7	105658451	rs6967330	G	A	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:191,234:0.55:425
chr7	105662690	rs10258293	T	C	7159.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:414,381:0.48:795
chr7	105668105	.	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.343;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	105671267	rs10270308	T	C	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.864;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:103,66:0.39:169
chr7	105732446	rs7782719	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr7	105733037	rs4434555	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.07;ReadPosRankSum=-0.852;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr7	105733619	rs176486	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	105739546	rs12540052	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr7	105903904	rs2302559	T	C	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr7	105910593	.	G	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5064;HP=2;HapScore=2;MGOF=6;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=31;QD=21.9237375157;SC=TTTTTTCTTGGTTGTCAGGAA;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=3;WE=105910601;WS=105910583;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr7	105910889	rs10256178	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=1.282;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	105913155	rs41430346	C	G	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr7	106508978	rs849389	A	G	5889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.427;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:304,304:0.50:608
chr7	106508987	rs849390	T	C	11624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=0.488;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:294,307:0.51:601
chr7	106519943	rs849370	T	C	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:123,148:0.55:271
chr7	106523446	rs849397	A	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr7	106685640	rs115878034	G	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	106786952	rs3729876	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	106787065	rs3729877	T	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	106799997	rs257376	G	A	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:284,267:0.48:551
chr7	106888946	.	TA	T	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=6.915;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=5.825;QD=0.38;ReadPosRankSum=1.621;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:261,57:0.18:318
chr7	106898870	rs373558918	TTC	T	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.027;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:121,26:0.18:147
chr7	106898908	rs376122764	TAC	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.635;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:91,15:0.14:106
chr7	106965039	rs6466164	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	107002806	rs2269970	A	G	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	107002948	rs147657410	C	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr7	107013281	rs76583802	T	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	107052920	rs79872747	A	G	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:94,114:0.55:208
chr7	107053157	.	C	CA	58	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5020;HP=12;HapScore=2;MGOF=22;MMLQ=18;MQ=58.59;NF=0;NR=5;PP=58;QD=12.8;SC=TATAACTTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=5;WE=107053165;WS=107053147;set=Platypus	GT:AD:AF:DP	1/0:3,5:0.62:8
chr7	107114400	rs11453718	A	AT	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	107115289	.	C	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.275;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:294,74:0.20:368
chr7	107167661	rs201626701	T	TA	940.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.515;QD=7.59;ReadPosRankSum=1.763;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:49,75:0.60:124
chr7	107188719	rs2066735	G	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:92,75:0.45:167
chr7	107194911	rs2520270	C	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	107198405	rs2520272	A	T	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-3.017;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:116,104:0.47:220
chr7	107208250	rs1468336	T	C	15380.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:1,607:1.00:608
chr7	107216738	rs10276604	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107217068	rs3839819	TG	T	4666.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	107218065	rs77582163	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	107255548	rs3801944	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr7	107255670	rs115551022	C	G	6758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=2.207;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:450,349:0.44:799
chr7	107258856	rs10262001	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,38:0.40:96
chr7	107258907	rs6958094	T	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chr7	107262518	rs61743132	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	107302101	rs7811324	C	A	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:205,174:0.46:379
chr7	107303622	rs2248464	A	T	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.23;SOR=1.842;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	107303622	.	ACTTATC	TCTTATC,TCTTATT	462	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=27;MQ=60.0;NF=40,22;NR=11,5;PP=424,462;QD=8.99551397151;SC=TCCAGGAAATACTTATCCTTT;SbPval=0.54;Source=Platypus;TC=51;TCF=40;TCR=11;TR=51,27;WE=107303636;WS=107303612;set=Platypus	GT:AF:DP	0/1:1.00:51
chr7	107303628	rs2248465	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.966;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:40,40:0.50:80
chr7	107336364	rs79531981	A	G	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:52,72:0.58:124
chr7	107338482	rs77944876	T	G	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.132;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:111,123:0.53:234
chr7	107338763	rs371262550	CT	C	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	107340372	rs35161285	CAAA	C	1095.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr7	107342294	rs17154335	T	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr7	107344953	rs115695710	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr7	107355745	rs60170932	T	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr7	107384849	rs756872	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	107389359	rs17154400	C	T	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:146,121:0.45:267
chr7	107389519	rs76930918	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:152,87:0.36:239
chr7	107392891	rs10594774	CTG	C	3214.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:69,121:0.64:190
chr7	107399655	rs140265004	GA	G	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr7	107412325	rs62467979	T	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr7	107414314	rs17154420	T	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	107414419	rs41669	A	G	11253.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr7	107416855	rs59105284	G	GT	1487.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	107418805	.	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.437;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	107531832	rs11373214	G	GC	2845.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	107542662	rs10250718	T	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	107545799	rs10263341	T	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	107546804	rs73726765	T	C	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:156,111:0.42:267
chr7	107546820	rs75123588	G	A	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:110,149:0.58:259
chr7	107546937	rs10281520	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr7	107558483	rs1803921	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,115:0.50:231
chr7	107564366	rs7561	T	G	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	107564539	rs3213673	G	A	2175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.01;ReadPosRankSum=-1.426;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:8,67:0.89:75
chr7	107564542	rs3213674	G	T	2292.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.654;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.57;ReadPosRankSum=-1.317;SOR=0.393;set=HC	GT:AD:AF:DP	1/1:6,69:0.92:75
chr7	107566760	.	C	T	2900.77	.	AC=1;AF=0.500;AN=2;DP=336;set=Intersection	GT:AD:AF:DP	0/1:168,155:0.48:323
chr7	107569517	rs1131398	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr7	107570193	rs17154628	T	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	107572730	rs57244800	C	A	7240.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:482,381:0.44:863
chr7	107580839	rs2158836	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr7	107591720	rs25660	G	A	9707.77	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:435,490:0.53:925
chr7	107593989	rs20556	T	C	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	107603431	rs2230156	A	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,79:0.48:163
chr7	107613379	rs2701034	G	A	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	107616188	rs28750165	G	A	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:176,147:0.46:323
chr7	107642342	rs139532877	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr7	107642616	rs7809772	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr7	107643106	rs73726674	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr7	107664429	rs1636944	G	A	3873.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:151,102:0.40:253
chr7	107664446	rs1616041	C	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:176,125:0.42:301
chr7	107664659	rs1636945	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	107667497	rs1732157	G	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:99,108:0.52:207
chr7	107677984	rs1627354	G	A	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:290,272:0.48:562
chr7	107684393	rs28461730	T	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr7	107689844	rs10260756	G	T	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	107692411	rs61237166	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,50:0.43:116
chr7	107696289	rs17154865	C	T	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,411:1.00:412
chr7	107704199	rs114388614	G	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	107717325	rs112091402	T	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr7	107717565	rs111594051	C	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr7	107718942	rs113296983	C	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr7	107720023	rs10269515	A	G	4398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.576;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:198,223:0.53:421
chr7	107720162	rs9690688	C	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,88:0.47:188
chr7	107720220	rs34856038	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr7	107732826	rs34137471	C	T	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:259,234:0.47:493
chr7	107749451	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr7	107756342	rs6945854	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	107756510	rs35644375	A	G	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr7	107756633	rs73426894	C	T	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	107763575	rs7788865	C	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.028;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr7	107763762	rs10551113	CCA	C	398.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	107800092	rs17155081	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	107807316	rs113433082	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.552;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr7	107815858	rs11983886	T	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:186,138:0.43:324
chr7	107818417	rs7791676	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr7	107820911	rs414077	G	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	107822198	rs2839850	A	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	107824572	rs11375907	A	AT	274.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	107824800	rs75016870	G	A	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:219,224:0.51:443
chr7	107824824	rs77754676	T	C	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:159,200:0.56:359
chr7	107832411	rs11974528	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	107834613	rs6958498	G	C	4292.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:261,218:0.46:479
chr7	107834624	rs6978315	T	C	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:221,195:0.47:416
chr7	107834734	rs404287	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:222,155:0.41:377
chr7	107836062	rs34038577	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	107836064	rs34680676	G	GAA	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	107836117	rs35825013	GT	G	637.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr7	107838464	rs381318	G	T	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.654;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:73,85:0.54:158
chr7	107838637	rs388557	C	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	107874906	rs1269632	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	107875143	.	G	GA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.285;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr7	107875170	rs1269633	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	108137253	rs11448779	G	GA	3107.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	108156050	rs40877	A	C	111.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	108209050	rs60598865	G	A	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	108209119	rs2240450	A	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	108213532	rs17155937	G	A	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	108213938	rs11408141	G	GT	73.06	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	108524444	rs11397223	C	CA	1193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.941;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.312;QD=7.41;ReadPosRankSum=0.710;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:58,103:0.64:161
chr7	110526569	rs258974	C	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr7	110763563	rs214865	T	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr7	110764988	.	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-0.499;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	111031968	rs77913960	C	T	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:95,147:0.61:242
chr7	111032703	rs37675	A	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	111372244	rs12705796	G	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	111376840	rs2301678	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	111379582	rs2074115	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	111379634	rs10246451	C	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	111382324	rs3757648	C	T	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	111386511	rs3832524	G	GT	6247.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	111400501	rs17158794	T	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	111481013	rs76137085	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr7	111487026	rs10275038	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	111503660	rs59559298	G	A	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:86,140:0.62:226
chr7	111512032	rs10224326	A	T	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	111512630	rs28593141	T	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	111535497	rs2074131	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	111535863	rs2074132	T	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	111541692	rs12154775	T	C	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	111617088	rs3864649	G	A	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	111624522	rs2074127	T	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	111624522	.	TA	CA,CG	401	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.56;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=9,9;NR=26,18;PP=69,401;QD=2.96489178706;SC=TTTTTTACTATATCACTTGGA;SbPval=0.56;Source=Platypus;TC=35;TCF=9;TCR=26;TR=35,27;WE=111624531;WS=111624512;set=Platypus	GT:AF:DP	0/1:1.00:35
chr7	111624523	rs6977506	A	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=-0.802;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr7	111629366	rs2074129	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr7	111634067	rs566714	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr7	111634368	rs847541	A	G	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	111640504	rs62474283	T	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	111640508	rs148172772	TAATA	T	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	111663757	rs254867	G	T	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr7	111926896	.	CTT	C,CT	592.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.239;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.592;QD=9.41;ReadPosRankSum=0.952;SOR=0.518;set=HC	GT:AD:AF:DP	1/2:13,25,25:0.40,0.40:63
chr7	111981015	rs76270609	C	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:96,173:0.64:269
chr7	111981065	rs79323676	C	T	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:121,205:0.63:326
chr7	111982577	rs6960155	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.051;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	112095782	rs6944364	T	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-1.645;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr7	112099136	rs34627083	TATA	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	112101909	rs2708609	T	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-1.791;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr7	112102355	rs2253962	T	G	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:87,155:0.64:242
chr7	112107999	rs1024569	T	C	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.192;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr7	112108291	rs1024570	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	112112279	rs2074796	G	A	5835.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:138,268:0.66:406
chr7	112130009	rs11767398	A	C	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.879;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:275,111:0.29:386
chr7	112130128	rs10225870	C	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr7	112555294	.	GA	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.871;QD=0.46;ReadPosRankSum=2.336;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr7	112575149	rs10231221	A	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	112579815	rs139022599	G	T	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	112724417	rs2256044	A	G	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	112724525	rs1608890	A	G	12030.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr7	112757387	rs1051878	T	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	112758231	.	G	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=1.330;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	112758324	rs2462665	G	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	112758694	rs2250343	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	113091235	rs145006705	C	A	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:119,173:0.59:292
chr7	113518502	rs2974938	A	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	113519267	rs35067467	C	T	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	113519719	rs2974944	A	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	113519796	rs2974942	C	T	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	114138751	rs2040658	G	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	114210814	rs17137124	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.397;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr7	114271579	.	CCAG	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.304;QD=0.26;ReadPosRankSum=1.736;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:219,18:0.08:237
chr7	114303617	rs35518337	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.337;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr7	114563201	rs73441214	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	114619598	rs2594449	C	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:126,59:0.32:185
chr7	115624325	rs77606818	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:163,82:0.33:245
chr7	115850937	rs1866961	T	C	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	115874560	rs2030978	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	115874817	rs3030639	TAA	T	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	115890187	rs73222310	A	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr7	115892295	rs17138466	C	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	115892650	rs1048508	T	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	115897222	rs2402058	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	115897242	rs2402059	T	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	115897392	rs4710	G	C	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	116139743	.	G	T	379.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr7	116140076	rs2535220	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	116140275	rs11767363	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	116140524	rs2270188	G	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr7	116145957	rs4730743	A	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr7	116146074	rs8940	C	G	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:82,147:0.64:229
chr7	116165360	rs1997623	A	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	116165463	rs2742125	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	116397572	rs13223756	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr7	116409675	rs72220100	CT	C	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.754;QD=8.68;ReadPosRankSum=1.036;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr7	116409690	rs74994656	T	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.767;QD=14.42;ReadPosRankSum=-0.265;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:25,46:0.65:71
chr7	116421967	rs6947629	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	116528240	rs4808	C	T	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:47,70:0.60:117
chr7	116533204	rs12706110	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr7	116550456	rs2074025	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	116557939	rs3173936	C	T	2392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.135;QD=12.73;ReadPosRankSum=2.303;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:74,114:0.61:188
chr7	116596697	rs6960131	A	G	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	116598735	rs6466595	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr7	116600049	rs10262671	A	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	116607172	.	CTT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.41;ReadPosRankSum=-0.480;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr7	116607501	rs10259502	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	116607542	rs112684668	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr7	116660464	rs5886844	AC	A	2989.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	116660850	rs138467626	T	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	116759850	rs112071074	T	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr7	116776101	rs113506667	T	C	4769.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:77,223:0.74:300
chr7	116810812	rs145123215	TC	T	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr7	116810818	rs190230458	C	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	116811037	rs193562	T	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr7	116811139	rs193563	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	116829463	rs185187	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:134,42:0.24:176
chr7	116838311	rs193573	G	A	10505.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	116918060	rs6972479	G	A	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	116918085	rs2228946	C	T	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	116962933	rs34431449	T	TC	4937.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:93,185:0.67:278
chr7	117066718	rs7784156	C	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	117188660	.	ATG	A	1016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;MQRankSum=6.086;QD=27.48;ReadPosRankSum=1.316;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr7	117188736	rs4727853	C	A	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-2.264;QD=6.50;ReadPosRankSum=0.062;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr7	117188750	rs201880593	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=49.78;MQRankSum=-3.299;QD=1.25;ReadPosRankSum=1.831;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:68,14:0.17:82
chr7	117199533	rs213950	G	A	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr7	117230283	rs17140229	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr7	117235055	rs1042077	T	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	117235196	rs4148712	CAT	C	83.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	117246636	rs35050470	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr7	117254527	rs213981	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	117307108	rs1800136	G	A	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:46,112:0.71:158
chr7	117361034	rs112341621	A	ATAAT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr7	117395683	rs77544834	A	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr7	117417836	rs139726652	CA	C	1006.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr7	117420784	rs17140422	T	C	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	117426484	rs149142354	AAAAC	A	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:56,12:0.18:68
chr7	117431113	rs35894760	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	117450810	rs34868515	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	117451068	rs116318926	T	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-2.612;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr7	117824239	rs2896242	G	C	13979.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr7	117832138	rs1061731	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.269;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	117867960	.	CT	C	376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.625;QD=13.45;ReadPosRankSum=1.513;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr7	117874308	rs10267938	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	117874610	rs55759859	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.918;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr7	120380907	rs6975107	C	T	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.525;QD=4.85;ReadPosRankSum=0.026;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:262,121:0.32:383
chr7	120380961	rs3834346	ATTTG	A	4352.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=43.97;SOR=1.808;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	120381751	rs7795370	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.524;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr7	120428607	rs41622	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	120428799	rs41623	C	A	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	120450658	rs7805733	G	A	5478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.196;QD=25.02;ReadPosRankSum=-1.157;SOR=0.298;set=HC	GT:AD:AF:DP	1/1:1,218:1.00:219
chr7	120450678	rs112555207	T	TCA	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.468;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.671;QD=5.18;ReadPosRankSum=1.782;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr7	120450726	rs10260155	G	A	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.358;QD=9.18;ReadPosRankSum=-0.429;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr7	120480186	rs77703031	C	T	3261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.510;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:95,158:0.62:253
chr7	120590786	rs11408222	C	CG	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	120605030	rs2525720	A	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	120610632	rs2074576	C	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	120613419	rs2721369	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	120613450	rs2525726	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	120655676	rs4730984	G	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr7	120704289	rs2721375	C	T	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.88;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	120739962	rs199844199	GTT	G,GT	2258.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-1.370;SOR=0.781;set=HC	GT:AD:AF:DP	1/2:38,76,79:0.39,0.41:193
chr7	120740103	rs798937	G	T	6207.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:178,302:0.63:480
chr7	120764573	rs798948	C	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	120770437	rs34320754	G	A	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	120776080	.	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.644;QD=1.44;ReadPosRankSum=-0.567;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr7	120776281	rs13232048	G	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	120781884	rs11979314	G	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	120884453	rs2272196	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr7	120901695	rs10953934	G	A	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr7	120965652	rs7782648	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr7	120969769	rs2908004	G	A	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	120979089	rs2707466	C	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	120991489	rs11768996	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.28;ReadPosRankSum=-0.000;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	121000021	rs3837124	A	AT	268.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	121000084	rs111415936	A	AAAGTTTT	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr7	121002876	rs2536164	A	G	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	121002910	rs2536163	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	121011615	rs2536155	G	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	121012196	rs57878748	GA	G	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.164;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr7	121080929	rs6961822	A	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:48,77:0.62:125
chr7	121081052	rs6962156	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:91,143:0.61:234
chr7	121081115	rs6466786	A	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:34,84:0.71:118
chr7	121164363	rs2896305	C	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	121616250	rs4629793	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.620;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr7	121653374	rs35947407	GTGA	G	12442.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	121653398	rs1147504	G	A	13837.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	121684445	rs41281698	C	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr7	121684718	rs1147487	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	121694908	rs116686697	G	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	121698827	rs1206381	A	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr7	121699151	rs59593536	AT	A	174.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.169;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr7	121719586	rs1206368	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	121719823	rs1206369	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	121731643	rs10429059	T	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr7	121732778	.	CA	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.239;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr7	121757026	rs279676	T	C	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr7	121758290	rs279677	G	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	121942442	rs144032772	GA	G	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.803;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr7	121942832	rs10685687	G	GACA	9381.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	121942847	rs6968786	G	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:205,102:0.33:307
chr7	121944527	rs11761299	T	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr7	121960407	rs1348442	T	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	121960438	rs1443749	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	121985541	rs798685	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr7	121985556	rs798684	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	122019373	rs13438501	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr7	122033379	rs2074588	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:175,87:0.33:262
chr7	122056001	rs11973627	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr7	122056225	rs138422764	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.862;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr7	122081519	rs138802944	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.886;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr7	122081750	.	G	A	264.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr7	122303321	rs2251761	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:144,55:0.28:199
chr7	122635024	rs860170	C	T	7436.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	122757719	.	TA	T	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=9.695;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.510;QD=2.89;ReadPosRankSum=-0.318;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr7	122769378	rs3837116	CTGTGTGTGTGTGTG	C,CTGTGTGTGTG	5350.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=250;set=Intersection	GT:AF:DP	1/2:0.78,0.14:192
chr7	122774603	rs2470983	C	A	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.498;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:52,106:0.67:158
chr7	122774729	rs2470984	C	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr7	122809111	rs1880178	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr7	123097380	rs12673749	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr7	123097468	rs10234745	T	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr7	123119990	rs10500091	T	C	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:98,166:0.63:264
chr7	123120070	rs12155170	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr7	123150194	rs1917708	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	123152019	rs10255061	C	T	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,86:0.69:124
chr7	123152035	rs10270705	T	C	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,99:0.63:156
chr7	123196787	rs113495801	C	CA	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	123256427	rs6962756	C	T	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	123264804	rs11769381	C	T	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:85,184:0.68:269
chr7	123269118	rs4731112	G	C	12908.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr7	123269976	rs3993666	G	GGC	1262.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	123295964	rs7779099	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	123296320	rs12538876	C	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=-1.981;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	123301940	rs7809453	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr7	123303405	rs76421411	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr7	123324546	rs5887151	AAT	A	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	123324745	rs147291543	CCAG	C	1284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.738;QD=30.59;ReadPosRankSum=1.251;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr7	123329060	rs3035629	GTCTC	G,GTC	960.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.99;ReadPosRankSum=0.284;SOR=0.278;set=HC	GT:AD:AF:DP	1/2:1,15,15:0.48,0.48:31
chr7	123334696	rs35280100	GT	G	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr7	123336804	rs10270793	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.365;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	123346298	rs181094221	C	T	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:110,143:0.57:253
chr7	123360352	rs12674456	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.813;QD=7.00;ReadPosRankSum=1.033;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr7	123360398	rs11377481	C	CA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.804;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.564;QD=4.28;ReadPosRankSum=-0.790;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr7	123388732	rs1054706	G	A	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:119,166:0.58:285
chr7	123593633	rs34404662	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr7	123593764	rs34633019	T	C	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:209,99:0.32:308
chr7	123594206	rs2285996	G	A	2911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.669;QD=14.86;ReadPosRankSum=0.142;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:62,134:0.68:196
chr7	123594903	rs6972388	A	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	123595086	rs34978112	T	C	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.724;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:262,96:0.27:358
chr7	123610348	rs11975640	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:168,64:0.28:232
chr7	123610388	rs55987967	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:100,37:0.27:137
chr7	124403893	rs112891082	C	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	124465416	rs35062732	A	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.762;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	124468885	rs141782737	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr7	124469267	rs10263573	A	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.418;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr7	124475296	rs142780416	TAAACA	T	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,13:0.24:55
chr7	124477157	rs74356464	T	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.231;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr7	124477182	rs7787804	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.656;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr7	124481245	rs3815221	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:68,22:0.24:90
chr7	124486980	rs7794637	T	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	124499002	rs6977407	AT	CA	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr7	124533680	rs4377885	C	T	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:125,208:0.62:333
chr7	124533740	rs10954048	C	T	6379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=1.226;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:191,308:0.62:499
chr7	124540841	rs4383910	A	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr7	124540872	rs7782354	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr7	124540969	rs7782525	C	G	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,91:0.57:161
chr7	125588728	rs17149089	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	125753485	rs1419526	C	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	125753551	rs1419527	A	G	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	125753556	rs5887285	A	AG	6533.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=1.470;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	125753603	rs1419528	A	G	3955.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=19.900;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.191;QD=19.58;ReadPosRankSum=-2.131;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:5,197:0.98:202
chr7	125753636	rs1419529	A	G	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	125753737	rs4395830	A	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	126173950	rs74678433	A	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,97:0.65:150
chr7	126544012	rs769199	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.15;QD=29.63;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	127026342	rs6962137	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	127224193	rs3735643	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr7	127230276	rs1419428	A	C	422.03	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr7	127233977	rs3779536	G	T	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:72,131:0.65:203
chr7	127235505	rs73720861	C	A	7026.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:129,322:0.71:451
chr7	127236016	rs73720862	G	C	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr7	127250907	rs712700	T	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	127251188	rs712701	T	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	127251541	rs111652274	C	T	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr7	127251792	rs327518	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.157;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=1.856;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr7	127253714	rs3835004	A	AG	1084.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	127254457	rs594141	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	127255285	rs698406	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	127255795	rs327516	C	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	127344973	rs115701447	C	T	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:70,140:0.67:210
chr7	127347733	rs11972774	G	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:174,68:0.28:242
chr7	127347797	rs114869973	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:18,56:0.76:74
chr7	127347820	.	AGTGT	A,AGTGTGT	422.52	.	AC=1,0;AF=0.500,0.00;AN=2;DP=45;set=Intersection	GT:AF:DP	0/1:0.79:19
chr7	127361269	rs918793	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr7	127447499	rs325440	A	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.443;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	127637816	rs17151639	A	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:326,149:0.31:475
chr7	127668769	rs117070316	G	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:62,15:0.19:77
chr7	127669857	rs3823994	A	T	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:57,145:0.72:202
chr7	127714491	rs225241	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr7	127721507	rs322825	T	C	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr7	127848082	rs7780882	T	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:62,99:0.61:161
chr7	127894592	rs17151919	G	A	6848.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:192,327:0.63:519
chr7	127957602	rs2290225	A	C	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	127973133	rs359650	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	127991133	rs891215	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:108,63:0.37:171
chr7	127992437	rs1651945	C	G	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	128000091	rs359642	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	128037205	rs377440501	GT	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.651;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	128040748	rs187267062	G	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr7	128043612	.	C	CA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.074;QD=3.61;ReadPosRankSum=-1.750;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr7	128095843	rs2288554	G	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr7	128095876	rs2732393	A	G	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	128097359	rs143067864	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:70,159:0.69:229
chr7	128102508	rs10647404	C	CTCTT	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	128119514	rs1065267	G	A	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-0.466;QD=2.52;ReadPosRankSum=-0.362;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:299,83:0.22:382
chr7	128133984	rs2562741	G	A	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	128137993	rs10245559	T	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr7	128140982	rs10257897	T	C	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-2.941;QD=5.33;ReadPosRankSum=0.107;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:149,75:0.33:224
chr7	128141083	rs10271878	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,59:0.35:170
chr7	128141136	rs3802007	T	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr7	128141865	rs1053124	T	C	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr7	128142023	rs12539729	A	T	8010.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=-0.062;QD=22.69;ReadPosRankSum=0.693;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:3,350:0.99:353
chr7	128142023	.	AAAAAAAAATT	TAAAAAAAATC,TAAAAAAAATT	2523	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=8;HapScore=1;MGOF=2;MMLQ=27;MQ=59.71;NF=26,97;NR=47,160;PP=947,2523;QD=13.7050393817;SC=GAGCTTTTTTAAAAAAAAATT;SbPval=0.62;Source=Platypus;TC=260;TCF=97;TCR=163;TR=73,257;WE=128142041;WS=128142013;set=Platypus	GT:AF:DP	0/1:0.28:260
chr7	128142033	rs35586323	T	C	2051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.402;QD=5.78;ReadPosRankSum=0.823;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:236,119:0.34:355
chr7	128219015	rs150732231	CAAA	C	780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.37;MQRankSum=-4.636;QD=18.59;ReadPosRankSum=1.852;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	128298973	rs58211466	G	GT	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.048;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr7	128299031	rs144813597	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr7	128312450	rs11769769	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr7	128315588	rs13308199	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	128317558	.	C	CAAAAA	150	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=16;HapScore=2;MGOF=9;MMLQ=24;MQ=57.83;NF=4;NR=0;PP=150;QD=38.25;SC=GACTCCGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=4;WE=128317566;WS=128317548;set=Platypus	GT:AD:AF:DP	1/1:3,4:0.57:7
chr7	128317931	rs139645567	CTG	C	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	128354101	rs146794881	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr7	128359133	rs6949056	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:90,30:0.25:120
chr7	128363205	rs201630973	A	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr7	128364895	rs6952563	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr7	128369870	rs12667612	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr7	128371206	rs339066	G	A	10370.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	128371246	rs41274144	C	T	1976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=1.153;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:191,116:0.38:307
chr7	128388541	rs12538139	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr7	128394606	rs2307040	C	T	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.552;QD=4.39;ReadPosRankSum=-1.858;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:169,71:0.30:240
chr7	128409225	rs1043550	A	G	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.349;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:151,53:0.26:204
chr7	128414484	rs17397588	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.226;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.050;SOR=1.497;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr7	128415195	rs1799922	T	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:126,77:0.38:203
chr7	128415290	rs17476081	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.229;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr7	128415860	rs3807128	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:204,70:0.26:274
chr7	128447054	rs35456642	C	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	128450532	rs7799186	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.254;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr7	128451353	rs111409895	C	CAGAGAGCCTGGGA	2248.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	128455767	rs4728137	C	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	128455916	rs2270590	G	A	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.325;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:42,78:0.65:120
chr7	128480791	rs2291564	C	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:86,150:0.64:236
chr7	128481196	rs2291565	T	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr7	128482440	rs2291566	C	G	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:111,215:0.66:326
chr7	128483227	rs2291567	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr7	128484816	rs3734973	A	G	7438.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:173,349:0.67:522
chr7	128485143	rs35281128	G	A	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:141,279:0.66:420
chr7	128487764	rs114697352	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr7	128487866	rs2249128	T	C	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	128487893	rs2291568	G	A	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:49,106:0.68:155
chr7	128488228	rs80002922	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr7	128490553	rs13227216	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr7	128491166	rs3816883	T	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:23,64:0.74:87
chr7	128491603	rs3816884	T	C	8831.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:200,418:0.68:618
chr7	128492557	rs61044960	GG	CA	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr7	128495338	rs3816885	C	T	7163.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:194,339:0.64:533
chr7	128498517	rs28379666	C	T	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-7.944;QD=13.89;ReadPosRankSum=0.363;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:53,33:0.38:86
chr7	128498520	rs28437296	T	C	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-7.998;QD=13.73;ReadPosRankSum=1.065;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:54,33:0.38:87
chr7	128498630	rs71999880	TACAC	T	852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.377;QD=25.84;ReadPosRankSum=-0.762;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr7	128506970	rs4323418	T	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr7	128508965	rs3736617	A	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	128517386	rs117405945	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.209;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:60,33:0.35:93
chr7	128527093	rs11982744	T	G	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:121,224:0.65:345
chr7	128531072	rs3734971	T	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr7	128531827	rs113639990	G	C	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr7	128532551	rs78082728	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,39:0.33:117
chr7	128532980	rs7782976	T	C	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr7	128533514	rs34061445	T	TC	5017.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	128533648	rs113922620	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	128534131	rs73461512	A	G	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr7	128534231	rs73461516	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr7	128542982	rs11975930	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	128543678	rs6955736	C	T	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	128544133	rs56144153	G	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:143,69:0.33:212
chr7	128547375	.	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	0/1:67,122:0.65:189
chr7	128547512	rs6948542	G	A	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	128548463	rs7786945	A	C	26234.73	.	AC=2;AF=1.00;AN=2;DB;DP=1044;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,1028:1.00:1028
chr7	128550577	rs75709678	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.557;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr7	128550680	rs11335250	GC	G	3085.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=31.49;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	128550892	rs112067635	C	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-0.351;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr7	128550894	rs1609545	G	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	128553100	rs142966946	T	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:63,114:0.64:177
chr7	128587351	rs199508964	CACTCTGCAGCCGCCCACTCTGCGGCCGCCT	C	6448.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr7	128607384	rs8043	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	128610467	.	A	AGT	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=6.135;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.420;QD=18.28;ReadPosRankSum=-0.395;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr7	128610484	rs1691779	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	128630227	rs1154329	C	T	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	128630313	rs6969930	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	128640334	rs4728144	A	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.42;ReadPosRankSum=-0.812;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	128640334	.	AA	TT	226	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5001;HP=7;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=5;NR=1;PP=226;QD=46.5779791437;SC=TAATTTTTTTAAAAAATTCCA;SbPval=0.91;Source=Platypus;TC=9;TCF=6;TCR=3;TR=6;WE=128640343;WS=128640324;set=Platypus	GT:AD:AF:DP	0/1:3,6:0.67:9
chr7	128640335	rs182945121	A	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.42;ReadPosRankSum=-0.812;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	128641226	rs2305324	G	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:241,107:0.31:348
chr7	128657008	rs138284925	C	T	2022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-1.841;QD=13.13;ReadPosRankSum=-0.093;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:57,97:0.63:154
chr7	128694976	rs2242028	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	128766505	rs6952057	A	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	128766528	rs10464697	G	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.612;QD=10.84;ReadPosRankSum=-0.591;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	128766533	rs10464698	A	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-2.336;QD=11.13;ReadPosRankSum=-1.806;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr7	128766553	rs6952077	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-2.218;QD=6.97;ReadPosRankSum=-1.920;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	128766925	rs146516875	C	T	10172.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:267,476:0.64:743
chr7	128767410	rs10247566	A	G	4031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-1.143;QD=5.65;ReadPosRankSum=-0.478;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:476,238:0.33:714
chr7	128767490	rs7809681	T	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:306,144:0.32:450
chr7	128767506	rs7809687	T	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:292,135:0.32:427
chr7	128784723	.	A	G	244	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=2;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=12;NR=0;PP=244;QD=23.2309343789;SC=GGGCTCCTGCACGGCGCGGCT;SbPval=1.0;Source=Platypus;TC=12;TCF=12;TCR=0;TR=12;WE=128784731;WS=128784713;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	128785008	rs13243618	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr7	128802936	rs919551	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr7	128804218	rs2566892	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr7	128829066	rs41304185	A	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=3.408;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr7	128843169	rs2566871	C	T	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	128843519	rs76281017	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr7	128845018	rs2703091	C	T	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr7	128845277	rs2075777	G	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	128845325	rs2566872	G	A	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	128845907	rs2075779	T	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	128846328	rs2228617	G	C	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr7	128846469	rs2735842	A	G	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	128850108	rs79893933	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,46:0.85:54
chr7	128865130	rs4731565	C	T	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.774;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr7	129029093	rs10954231	A	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=1.054;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	129040018	rs17552411	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-2.084;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr7	129049507	rs6467244	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr7	129102743	rs34275118	A	G	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=1.743;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:251,110:0.30:361
chr7	129125296	rs200708461	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=1.269;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	129125750	rs692625	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	129142694	rs691332	C	G	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.815;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:206,93:0.31:299
chr7	129142775	rs610591	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr7	129297332	rs1882094	T	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:202,79:0.28:281
chr7	129410144	rs4467881	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr7	129519555	rs62491504	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr7	129663496	rs11556924	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:134,59:0.31:193
chr7	129664312	rs1464890	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:133,57:0.30:190
chr7	129679184	.	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.178;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	129680994	rs34409527	A	ATG	1048.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr7	129736880	rs12531444	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:151,58:0.28:209
chr7	129756523	rs17641278	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr7	129764409	rs62491326	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.712;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	129806416	rs6467285	A	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr7	129806441	rs4507710	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	129813738	rs3823482	T	C	3920.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:88,184:0.68:272
chr7	129842229	rs17164729	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	129845202	rs62491980	C	A	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:558,230:0.29:788
chr7	129846823	.	T	TA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.988;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	129847482	rs2727837	C	T	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	129853251	rs6969994	T	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr7	129855837	rs4728190	C	T	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:69,166:0.71:235
chr7	129906915	rs7788519	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	129913516	rs71178569	CT	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.262;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr7	129916515	rs17590	T	C	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.413;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:196,103:0.34:299
chr7	129938598	rs34587586	G	T	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.445;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:181,64:0.26:245
chr7	129938711	rs10259610	C	G	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr7	129939221	rs61731647	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:43,86:0.67:129
chr7	129940561	rs12538292	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	129944270	rs112569976	A	C	4019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=2.303;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:129,196:0.60:325
chr7	129944272	rs113550609	A	G	7894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.07;ReadPosRankSum=2.456;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:128,200:0.61:328
chr7	129945751	rs35924272	G	A	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:78,143:0.65:221
chr7	129948013	rs1038628	G	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,60:0.37:161
chr7	129950740	rs2171492	G	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	129951784	rs146291706	T	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=1.181;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	129962360	rs1569133	A	G	10114.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr7	129987764	rs12532645	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr7	130002317	rs1544705	T	C	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr7	130020569	rs7790688	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr7	130021488	rs1126899	G	C	8554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=1.337;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:171,394:0.70:565
chr7	130021871	.	G	C	1015.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr7	130024308	rs3043750	A	AC	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr7	130025895	rs2239606	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr7	130080812	rs2287371	T	G	8749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=2.242;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:185,409:0.69:594
chr7	130080951	rs10230435	C	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:121,200:0.62:321
chr7	130080985	rs10230670	G	A	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:53,105:0.66:158
chr7	130136902	rs2072573	G	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,15:0.23:65
chr7	130138155	rs6968284	A	G	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr7	130140766	rs765205	C	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-2.108;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr7	130147307	rs2302826	T	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr7	130148507	rs2072575	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr7	130148562	rs58927323	T	TTCTTAGGAAGTG	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	130148903	rs12706941	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr7	130149061	rs12706942	G	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,63:0.41:152
chr7	130150705	rs12706944	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-2.267;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:93,43:0.32:136
chr7	130288598	.	CA	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.652;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.399;QD=1.09;ReadPosRankSum=-0.903;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:73,32:0.30:105
chr7	130292531	rs12706946	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:89,38:0.30:127
chr7	130297119	rs34699820	GA	G	3104.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:20,176:0.90:196
chr7	130298550	rs4731696	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	130354106	rs10232683	G	C	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	130357763	rs76213788	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr7	130370267	rs17165066	T	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr7	130418525	rs76603546	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,54:0.39:137
chr7	130418720	rs111359117	A	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	130418883	.	C	CGAGCGCCGTCCGAACGCGGCCGGCCGCGGGCGACGGAGTTCCCGGGAGCGTCCGTCCCGCAGCCTCG	472.77	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	131113759	rs138476144	T	TA	2386.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr7	131155586	rs3213820	G	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.88;ReadPosRankSum=1.547;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr7	131155586	.	GTG	CTT	319	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=115;MMLQ=27;MQ=60.0;NF=6;NR=4;PP=319;QD=37.2467874862;SC=AATTATCCTTGTGTACATTTT;SbPval=0.55;Source=Platypus;TC=16;TCF=10;TCR=6;TR=10;WE=131155596;WS=131155576;set=Platypus	GT:AD:AF:DP	1/0:6,10:0.62:16
chr7	131155588	rs1733861	G	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.13;ReadPosRankSum=2.361;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr7	131163354	rs10701186	C	CTT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.227;QD=2.70;ReadPosRankSum=1.348;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	131190554	rs7799613	C	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	131190696	rs6651125	T	C	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	131191536	rs3212303	A	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	131191554	rs56231781	TC	T	2467.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	131191609	rs11770771	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	131241029	.	G	GGGCGAC	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.032;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:37,30:0.45:67
chr7	131815310	rs2671103	A	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	131815343	rs10954361	G	A	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr7	131815387	.	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-1.102;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr7	131817726	rs6467422	T	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=11.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.02;ReadPosRankSum=-2.654;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	131817735	rs6467423	C	T	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=-0.419;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	131817850	rs75848889	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:211,108:0.34:319
chr7	131830080	rs2671100	G	A	5056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.41;ReadPosRankSum=1.335;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:84,132:0.61:216
chr7	131830086	rs2598198	C	T	4874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=0.680;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:71,122:0.63:193
chr7	131832627	rs1450882	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	131833425	rs10256987	G	A	4461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=-0.523;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:85,116:0.58:201
chr7	131833425	.	GTT	ATC	2056	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=1;MGOF=9;MMLQ=27;MQ=60.0;NF=18;NR=37;PP=2056;QD=38.3539613611;SC=GAGCGGTGGCGTTTCAGAGAG;SbPval=0.86;Source=Platypus;TC=97;TCF=41;TCR=56;TR=55;WE=131833435;WS=131833415;set=Platypus	GT:AD:AF:DP	1/0:42,55:0.57:97
chr7	131833427	rs2671108	T	C	4461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.24;ReadPosRankSum=-0.083;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:82,110:0.57:192
chr7	131833465	rs2598199	A	T	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr7	131849204	rs896167	T	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	131849981	rs17166207	A	G	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:71,95:0.57:166
chr7	131852984	rs7777156	C	T	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.58;ReadPosRankSum=0.467;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:19,49:0.72:68
chr7	131852989	rs59200081	G	C	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=1.804;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:28,57:0.67:85
chr7	131859496	rs7808586	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:34,82:0.71:116
chr7	131864215	rs114345206	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:50,116:0.70:166
chr7	131864249	rs57986525	T	C	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:72,146:0.67:218
chr7	131864379	rs57665981	A	G	6717.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:178,320:0.64:498
chr7	131864407	rs3734990	G	A	6683.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:233,317:0.58:550
chr7	131864591	rs3734989	T	C	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:55,121:0.69:176
chr7	131911054	rs115855700	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.793;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr7	131915507	rs1868781	A	G	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:68,131:0.66:199
chr7	131926112	rs3925378	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=-0.056;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	132070054	rs741664	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:121,49:0.29:170
chr7	132070097	rs79238551	A	G	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:76,147:0.66:223
chr7	132658656	rs76293635	G	A	1962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.180;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,94:0.70:134
chr7	132766584	rs11769814	C	G	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	132938039	rs10641096	C	CCCTT	911.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr7	132990498	rs10229242	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	132990536	rs5887620	C	CT	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	133580447	rs2042456	G	A	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr7	133580545	rs2042455	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	133602230	rs75286006	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr7	133682181	rs3735050	T	C	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	133749164	rs6953296	G	A	3794.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:109,175:0.62:284
chr7	133749328	rs33995948	C	CT	1762.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:30,85:0.74:115
chr7	133868368	rs1222420	C	T	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	133868507	rs1222419	C	T	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr7	133881919	rs10611703	ATG	A	1003.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=32.38;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	133979545	rs2504	A	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.241;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr7	133979552	rs2505	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.182;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr7	133979578	rs2241336	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:53,13:0.20:66
chr7	133979795	rs1421484	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-2.343;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:107,31:0.22:138
chr7	133980999	rs1862050	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr7	133981021	rs1862051	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr7	133981227	rs1862052	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr7	133984127	rs2075371	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr7	133984432	rs2075372	C	A,T	910.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	1/2:0.59,0.41:34
chr7	133984878	rs34664116	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:111,55:0.33:166
chr7	133989543	rs447266	A	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=2.707;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr7	133989816	rs2544217	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.708;QD=2.55;ReadPosRankSum=-0.159;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr7	134133291	rs2734653	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.438;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr7	134134338	rs71531826	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.284;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr7	134135751	rs2734649	C	T	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:265,137:0.34:402
chr7	134136584	rs1732035	A	C	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	134212741	rs2037005	A	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr7	134215259	rs1722886	A	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr7	134215403	rs1722883	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:64,120:0.65:184
chr7	134217729	rs3735041	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.200;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:55,30:0.35:85
chr7	134221694	rs706159	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr7	134223127	rs4732035	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr7	134225788	rs4732036	C	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	134225827	rs4728329	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	134250322	rs4732038	A	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	134250496	.	G	T	138.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	134254427	rs782538	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	134261097	rs2161803	C	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	134261674	rs6979933	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:76,170:0.69:246
chr7	134262441	rs10241998	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:29,92:0.76:121
chr7	134264233	rs72495463	C	CT	1966.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:76,129:0.63:205
chr7	134264286	rs6467538	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr7	134576441	rs6953822	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.67;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	134576466	rs77382246	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-1.654;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr7	134612682	rs150279120	ATATT	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	134612759	rs11438725	G	GT	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.81;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	134618032	rs114442219	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:72,88:0.55:160
chr7	134618710	rs6973420	A	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	134625774	rs76502148	G	C	131.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.47;ReadPosRankSum=1.242;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	134673958	rs12671813	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	134678253	rs2348049	T	A	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:58,142:0.71:200
chr7	134678463	rs12540686	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr7	134678523	rs2252826	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	134694773	.	C	CT	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.850;QD=8.47;ReadPosRankSum=1.889;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr7	134694939	rs6958457	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	134701856	rs4236655	G	C	10216.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	134719551	rs9656447	C	G	7598.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	134730151	rs2348054	G	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	134730441	rs2348055	A	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	134744060	rs146909058	CA	C	2328.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	134765148	rs10215144	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	134800403	rs114250710	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr7	134813853	rs2348282	G	A	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	134833056	rs3735002	C	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	134849213	rs3800592	G	A	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	134849280	rs292501	T	A	10094.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr7	134849577	rs2288237	A	C	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	134852399	rs2288238	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	134852420	rs138841490	CA	C	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr7	134852432	rs292505	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	134853844	rs9649052	C	A	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	134871775	rs292557	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr7	134872003	rs292558	C	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	134873355	rs292564	G	A	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	134877935	rs292573	A	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	134879830	rs292575	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	134880884	rs292578	G	C	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr7	134882592	rs292581	C	T	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	134882680	rs292582	A	G	5955.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-0.537;SOR=0.444;set=HC	GT:AD:AF:DP	1/1:1,225:1.00:226
chr7	134882693	rs292583	T	C	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	134889141	rs292592	G	A	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	134890855	rs292593	T	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	134895532	rs292601	T	C	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr7	134896383	rs292602	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	134925241	rs34330846	C	CA	1985.73	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:95,124:0.57:219
chr7	134925411	rs7805859	G	A	6369.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:135,296:0.69:431
chr7	134928033	rs62481958	G	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,65:0.61:106
chr7	134930169	rs113633449	A	AGAG	3431.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.845;MLEAC=2;MLEAF=1.000;MQ=61.27;MQRankSum=1.100;QD=25.05;ReadPosRankSum=1.850;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:6,131:0.96:137
chr7	134939767	rs17168332	G	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr7	134943057	rs11979450	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr7	134943087	rs11979453	C	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr7	134943116	rs11979480	C	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr7	134943328	rs58802664	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr7	134962043	rs10239950	C	G	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:156,96:0.38:252
chr7	135047703	rs6969632	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	135048033	rs2059367	G	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	135048804	rs3812265	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.222;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:175,62:0.26:237
chr7	135083052	rs376120582	G	GA	37.87	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	135095270	rs2696877	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	135242910	rs6961420	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	135262533	rs10252250	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	135272270	rs10271506	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.349;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr7	135279315	rs7800214	A	C	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	135282698	rs79816318	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	135285788	rs4296989	T	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	135304273	rs7810767	G	C	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	135311120	rs7810260	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:98,53:0.35:151
chr7	135311167	rs10234309	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr7	135328110	rs10260691	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr7	135344722	rs76188788	A	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.42;ReadPosRankSum=1.383;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr7	135345319	rs10258155	A	G	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.636;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.545;QD=12.88;ReadPosRankSum=-1.377;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:68,115:0.63:183
chr7	135347239	rs141207942	G	GC	1802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.883;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:48,76:0.61:124
chr7	135376893	rs3112335	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.15;ReadPosRankSum=1.645;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	135387473	rs3112345	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:49,14:0.22:63
chr7	135387495	rs3112346	A	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,25:0.27:92
chr7	135387656	rs3112347	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:86,39:0.31:125
chr7	135392876	rs3110800	T	C	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=1.792;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:304,133:0.30:437
chr7	135406176	rs4596594	A	G	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:112,188:0.63:300
chr7	135412273	rs3112369	T	C	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	135413626	rs3807338	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr7	135421697	rs10253067	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	135422042	rs6978331	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr7	136588109	rs6963819	G	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:7,54:0.89:61
chr7	136912903	rs11505752	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	136921062	rs322295	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.245;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:67,48:0.42:115
chr7	136939582	rs1162122	G	T	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	137092745	rs3217275	CA	C	5476.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	137092781	rs7800454	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	137097086	rs1731959	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	137128830	rs1918837	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.466;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr7	137148376	rs59337903	C	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-0.169;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:54,87:0.62:141
chr7	137150576	rs59917775	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	137150618	rs58491252	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr7	137150665	rs35245703	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr7	137150786	rs59386564	A	G	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.049;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr7	137154572	rs2293546	T	C	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	137255905	rs834446	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr7	137255996	rs863082	A	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:95,127:0.57:222
chr7	137256176	rs834445	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr7	137261940	rs834431	T	G	316.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr7	137284480	rs706568	T	A	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:42,103:0.71:145
chr7	137293890	.	A	ACCACCACCACTACCAT	2491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.562;QD=24.19;ReadPosRankSum=1.402;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:38,65:0.63:103
chr7	137304765	.	GCACACACA	G,GCACACACACA	227.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=18;set=Intersection	GT:AF:DP	1/2:0.36,0.55:11
chr7	137330120	rs36002118	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr7	137339598	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.269;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr7	137363153	rs141632656	ACT	A	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.062;QD=15.34;ReadPosRankSum=0.139;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	137531147	rs71815938	GT	G	16045.73	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=38.57;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr7	137531697	rs117303154	C	A	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=1.766;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:35,78:0.69:113
chr7	137586080	rs56200577	C	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,76:0.60:126
chr7	137590369	rs273968	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	137600690	rs273957	C	T	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	137607231	rs371292432	TAC	T	422.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-0.802;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:6,19:0.76:25
chr7	137612913	rs66593747	CTGG	C	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr7	137641123	rs274003	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=1.180;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr7	137686297	rs72580571	GACA	G	12776.73	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:153,318:0.68:471
chr7	137773291	rs2120846	T	G	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:88,202:0.70:290
chr7	137773563	rs2166188	T	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.110;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	137776411	rs202194493	C	CA	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-0.968;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr7	137782593	rs35402657	CT	C	257.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.11;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	137798593	rs2306847	A	T	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	137801413	rs1872929	A	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	137801444	rs1872930	C	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	138145778	rs112619223	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr7	138188932	rs10488642	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr7	138200117	rs3757381	A	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	138229990	rs6959574	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	138258467	rs141000079	C	CCTT	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.776;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=3.019;QD=9.30;ReadPosRankSum=0.258;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr7	138261319	rs59147816	TAAC	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.25;ReadPosRankSum=0.938;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	138264340	rs111433097	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr7	138268563	rs3213902	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	138279228	rs1439793	A	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	138281355	rs1659832	A	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	138281906	rs1659831	T	C	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr7	138305743	rs3734946	A	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.760;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:120,53:0.31:173
chr7	138305782	rs3734945	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.625;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:132,57:0.30:189
chr7	138310629	rs1673162	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:250,93:0.27:343
chr7	138310811	rs144638129	C	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:36,92:0.72:128
chr7	138312122	rs2305816	A	C	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.135;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:138,71:0.34:209
chr7	138314780	rs1659808	C	A	2802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=3.060;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:50,130:0.72:180
chr7	138314999	rs1673164	A	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr7	138329464	rs146967214	G	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr7	138329658	rs28367131	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr7	138333933	rs58569190	GA	G	705.74	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr7	138356659	rs5887893	AG	A	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	138356662	rs5011821	G	A	1785.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.26;SOR=4.351;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	138356663	rs5011820	G	C	1785.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.26;SOR=4.351;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	138356664	rs5887894	C	CA	1776.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=4.021;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	138356722	rs10234595	C	T	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-1.128;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:33,59:0.64:92
chr7	138356730	rs202122915	T	TG	4750.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	138356733	rs5887896	TG	T	4775.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	138363767	rs10250576	A	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr7	138363896	rs12535253	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr7	138417718	rs3807154	A	G	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr7	138418910	rs1026435	G	A	10602.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr7	138419085	rs1037692	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	138429851	rs6467797	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-1.215;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr7	138433937	rs58568563	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr7	138434044	rs76977934	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-1.265;QD=12.58;ReadPosRankSum=-1.765;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr7	138434066	rs11324444	GA	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.273;QD=1.99;ReadPosRankSum=3.363;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	138441124	rs296910	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	138453892	rs374123555	GAA	G,GA	1130.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.44;MQRankSum=0.614;QD=15.70;ReadPosRankSum=0.197;SOR=0.655;set=HC	GT:AD:AF:DP	1/2:9,46,17:0.64,0.24:72
chr7	138455988	rs10258719	A	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	138485954	rs6945259	G	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	138486096	rs61729750	G	C	16734.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr7	138545996	rs12707399	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr7	138554232	.	C	T	148.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	138554411	rs116788555	C	T	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:44,103:0.70:147
chr7	138555816	rs35334186	GC	G	389.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	138566205	rs142709120	C	T	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,86:0.67:128
chr7	138583840	rs7802841	C	A	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:76,145:0.66:221
chr7	138588538	.	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	A,AGTGTGTGT	286	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=16;MQ=56.29;NF=0,0;NR=7,7;PP=286,141;QD=41.2857142857;SC=GTAAAAAAACAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=24;TCF=2;TCR=22;TR=7,7;WE=138588581;WS=138588528;set=Platypus	GT:AF:DP	0/1:0.29:24
chr7	138595835	rs11379929	T	TA	1824.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:8,91:0.92:99
chr7	138596001	rs16873582	G	A	2940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.735;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:54,140:0.72:194
chr7	138596064	rs6969074	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	138597036	rs3735013	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	138601473	rs1958658	C	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:96,56:0.37:152
chr7	138601826	rs2251220	G	A	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	138602417	rs2774960	G	A	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	138602523	rs2774962	T	C	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	138602916	rs2718131	G	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:121,52:0.30:173
chr7	138603282	rs59985563	T	C	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:75,131:0.64:206
chr7	138707177	rs10249949	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr7	138711766	rs79565778	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	138713400	rs3735009	G	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	138719194	rs10713373	AG	A	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.381;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr7	138719231	rs7810237	T	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.096;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr7	138732274	rs3087999	C	G	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:66,117:0.64:183
chr7	138732497	rs3735007	G	A	5105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=2.123;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:127,246:0.66:373
chr7	138738573	.	G	GAA	68	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=15;HapScore=2;MGOF=30;MMLQ=15;MQ=60.0;NF=3;NR=2;PP=68;QD=14.2;SC=TTGATAGAATGAAAAAAAAAA;SbPval=0.8;Source=Platypus;TC=6;TCF=3;TCR=3;TR=5;WE=138738581;WS=138738565;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr7	138739816	rs10261597	C	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	138740037	rs2297236	G	C	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:59,139:0.70:198
chr7	138740186	rs2297237	A	G	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.58;ReadPosRankSum=-0.185;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr7	138740195	rs2297238	T	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=1.445;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	138740224	rs2297239	T	C	250.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	138740240	rs2297240	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	138818744	rs7789074	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr7	138819445	rs35197265	C	T	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:85,120:0.59:205
chr7	138819610	rs28571193	T	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	138822504	rs10674402	T	TGTTC	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	138822735	rs76685969	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr7	138822762	rs7809077	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr7	138824842	rs3217610	GA	G	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr7	138824849	rs2305330	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr7	138831707	rs10248924	C	T	4095.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:77,195:0.72:272
chr7	138845932	rs80259064	T	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr7	138853315	rs112942380	CA	C	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.305;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:23,60:0.72:83
chr7	138872345	rs2249070	C	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	138874088	rs75645485	C	T	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.484;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:178,49:0.22:227
chr7	138944150	rs192722949	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr7	138946202	rs182314709	G	A	3431.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:76,162:0.68:238
chr7	138957260	rs193230240	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,73:0.75:97
chr7	138958906	rs189018013	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr7	139026152	rs10265	T	G	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:98,197:0.67:295
chr7	139097282	.	AT	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.216;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr7	139138551	rs10954649	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr7	139138703	rs73470410	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr7	139138871	rs11763327	T	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr7	139138950	rs17160911	C	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr7	139167934	rs1860150	T	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr7	139168063	rs12707447	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:43,87:0.67:130
chr7	139313488	rs41274215	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr7	139313816	rs10276928	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:143,71:0.33:214
chr7	139316360	rs28579164	C	T	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-1.001;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:115,64:0.36:179
chr7	139316502	rs28611119	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.341;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr7	139415775	rs7456421	G	C	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:78,158:0.67:236
chr7	139477639	.	G	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-0.282;QD=14.09;ReadPosRankSum=0.549;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	139478175	rs1860509	T	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:9,47:0.84:56
chr7	139480478	rs76507066	A	G	5297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.047;QD=14.02;ReadPosRankSum=-1.528;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:133,245:0.65:378
chr7	139605869	rs35857550	CT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.055;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr7	139613072	rs6464448	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:89,65:0.42:154
chr7	139652440	rs6952940	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr7	139653196	rs5768	A	C	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr7	139716145	rs10234812	T	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-2.826;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr7	139724169	rs13760	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	139734069	rs35456446	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:64,85:0.57:149
chr7	139737421	rs35076815	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr7	139737798	rs67617970	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr7	139746633	.	T	TGTGTGC	248	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=25;MMLQ=27;MQ=58.33;NF=5;NR=13;PP=248;QD=13.9444444444;SC=TGTGTGTGTGTCACACACAGA;SbPval=0.31;Source=Platypus;TC=54;TCF=11;TCR=43;TR=18;WE=139746641;WS=139746622;set=Platypus	GT:AD:AF:DP	0/1:36,18:0.33:54
chr7	139754451	rs2362460	T	C	8682.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr7	139754685	rs41275039	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.216;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr7	139757911	rs10252898	C	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr7	139762273	rs737321	A	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	139762282	rs6945590	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	139791109	rs12703533	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.804;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr7	139794009	rs12375063	T	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=2.692;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	139797225	rs3214226	TA	T	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr7	139797431	rs6950119	G	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.850;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr7	139801777	rs1062277	T	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.653;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr7	139810796	rs2301893	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.516;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr7	139820354	rs59225858	C	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:163,88:0.35:251
chr7	140036999	rs4332050	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	140043163	rs111278005	G	A	175.89	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr7	140043442	rs78479590	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.031;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr7	140044979	rs6974016	C	T	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	140051116	rs76089276	G	A	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:100,215:0.68:315
chr7	140079971	rs66646584	G	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr7	140082363	rs6968618	G	A	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=5.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=2.268;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:136,74:0.35:210
chr7	140110677	rs2971690	G	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	140110781	rs2971689	G	C	1936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.850;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:306,127:0.29:433
chr7	140111486	rs2948389	A	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	140111509	rs2971688	G	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	140125750	rs2948386	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:230,113:0.33:343
chr7	140155778	rs2363826	G	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:51,113:0.69:164
chr7	140159721	rs10243155	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr7	140159798	rs11763850	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	140172930	rs116030971	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	140173010	rs58539466	C	CA	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.776;QD=7.61;ReadPosRankSum=-1.124;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr7	140174244	rs73489099	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr7	140174292	rs10709936	CA	C	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.005;QD=8.14;ReadPosRankSum=-0.267;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	140175036	rs10262721	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr7	140175101	rs10274673	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:60,120:0.67:180
chr7	140175141	rs139052285	AAAAC	A	6017.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:78,151:0.66:229
chr7	140218464	rs6852	C	A	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.767;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:128,62:0.33:190
chr7	140225750	rs2252397	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr7	140227293	rs6464833	A	G	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr7	140255623	rs4342501	T	C	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.617;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:65,44:0.40:109
chr7	140255636	rs1568640	C	T	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.978;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:36,52:0.59:88
chr7	140257841	rs10252031	A	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	140257877	rs111518103	C	G	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr7	140257907	rs12704002	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:117,38:0.25:155
chr7	140258000	rs12704003	T	C	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.052;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:289,132:0.31:421
chr7	140266877	rs73502154	C	T	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:90,177:0.66:267
chr7	140269357	rs73483908	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr7	140269625	rs587373	C	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr7	140285529	rs73736619	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:62,78:0.56:140
chr7	140285617	rs75640774	C	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr7	140285663	rs73498497	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	140287431	rs142893936	C	G	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.213;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr7	140301731	rs269243	G	T	20150.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr7	140373326	rs2968558	A	G	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:87,179:0.67:266
chr7	140374049	rs1140034	T	C	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:124,199:0.62:323
chr7	140380884	rs3748092	G	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr7	140390720	rs144837217	T	TTTG	996.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.15;ReadPosRankSum=0.256;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr7	140395554	rs373239942	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.848;QD=1.05;ReadPosRankSum=2.401;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr7	140396472	rs57717083	C	CG	1260.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	140397307	.	GGGGTGCGAGGTAGGGAGC	G	763	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=0.9998;HP=4;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=763;QD=397.0;SC=CGGAGGGCTGGGGGTGCGAGG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=140397332;WS=140397297;set=Platypus	GT:AD:AF:DP	1/1:5,2:0.29:7
chr7	140397792	rs1267673	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr7	140404562	.	GT	G	286.50	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr7	140426257	rs3829814	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:85,40:0.32:125
chr7	140434597	rs61291709	GAAA	GAAAA,G	669.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=30.44;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:0,7,15:0.32,0.68:22
chr7	140434611	rs376053513	AAAG	A	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=24.25;ReadPosRankSum=1.377;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr7	140434620	rs55806659	A	G	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=24.99;ReadPosRankSum=0.306;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	140449150	rs9648696	T	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr7	140481511	rs6959000	A	C	5409.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:143,256:0.64:399
chr7	140487202	rs1267632	C	T	40.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr7	140702199	rs58976362	C	CTTT	778.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.516;QD=19.47;ReadPosRankSum=1.525;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:10,30:0.75:40
chr7	140774467	rs477223	C	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	140912279	rs116277142	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	141137460	rs13233459	C	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:105,79:0.43:184
chr7	141137554	rs1727491	A	G	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	141137554	.	ACG	GCA	2806	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=17;MMLQ=27;MQ=60.0;NF=38;NR=40;PP=2806;QD=20;SC=AGGTAAGGCTACGGGCTCGGC;SbPval=0.53;Source=Platypus;TC=79;TCF=38;TCR=41;TR=78;WE=141137564;WS=141137544;set=Platypus	GT:AD:AF:DP	1/1:1,78:0.99:79
chr7	141137556	rs1619668	G	A	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	141176988	rs7799309	T	C	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:157,266:0.63:423
chr7	141362431	rs6949729	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	141374030	.	A	AAC	188	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=4;HapScore=3;MGOF=14;MMLQ=27;MQ=60.28;NF=0;NR=11;PP=188;QD=17.3636363636;SC=CCTGCAGAAAAACACACACAC;SbPval=1.0;Source=Platypus;TC=26;TCF=0;TCR=26;TR=11;WE=141374039;WS=141374020;set=Platypus	GT:AD:AF:DP	1/0:15,11:0.42:26
chr7	141386264	rs35707772	AC	A	456.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr7	141420707	rs6971275	T	C	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-0.211;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:47,125:0.73:172
chr7	141420768	rs6967301	A	G	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:97,182:0.65:279
chr7	141429224	rs35399772	TC	T	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	141429515	rs6962507	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr7	141442213	rs2301924	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=0.483;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	141443917	rs146405153	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr7	141463914	rs765007	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr7	141464765	rs2270009	C	T	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:252,124:0.33:376
chr7	141478308	rs2233998	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	141478574	rs2234001	G	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:195,91:0.32:286
chr7	141478800	rs2234002	G	A	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:237,137:0.37:374
chr7	141490107	rs2234012	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=-0.491;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	141490238	rs2227264	G	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr7	141536351	rs370442337	CAG	C	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.394;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:112,31:0.22:143
chr7	141537735	rs12669721	T	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr7	141537942	rs145160047	T	TCAA	1365.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:135,46:0.25:181
chr7	141537968	rs11765575	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:122,45:0.27:167
chr7	141538865	rs12703412	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr7	141635538	rs5888023	C	CA	2107.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	141672705	rs1726866	G	A	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr7	141705515	rs1285964	A	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr7	141705540	rs1285965	A	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr7	141708625	rs1465093	A	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr7	141720643	rs1852508	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr7	141721639	rs2272327	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr7	141724799	rs10270832	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr7	141724817	rs10274045	T	G	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:60,104:0.63:164
chr7	141724838	rs6972387	C	A	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:86,156:0.64:242
chr7	141724852	rs10255702	C	T	4219.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:102,199:0.66:301
chr7	141726775	rs7797443	A	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr7	141727526	rs2272330	G	T	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:48,102:0.68:150
chr7	141727679	rs34441915	AT	A	93	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	141730618	rs111279755	CTG	C	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	141731340	rs4374898	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	141733994	rs10693852	T	TTG	2411.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	141736798	rs4132774	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:136,59:0.30:195
chr7	141738504	rs8180874	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:126,72:0.36:198
chr7	141740409	rs10215116	A	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr7	141747499	rs62477571	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr7	141747658	rs2960746	A	G	10332.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr7	141750316	rs6948116	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	141750472	rs62477572	A	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr7	141750772	.	G	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-8.410;QD=1.32;ReadPosRankSum=-6.708;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:206,24:0.10:230
chr7	141750775	.	C	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-8.129;QD=1.13;ReadPosRankSum=-7.116;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:193,21:0.10:214
chr7	141752006	rs71166554	AT	A	1726.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:3,87:0.97:90
chr7	141752020	rs371384519	GA	G	1053.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr7	141752213	rs2961085	C	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.96;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	141752213	.	CGA	AGC	375	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=0.5010;HP=1;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=5;NR=16;PP=375;QD=20.4032321363;SC=GTGCTTCTGCCGAAAACTGCA;SbPval=0.46;Source=Platypus;TC=24;TCF=5;TCR=19;TR=21;WE=141752223;WS=141752203;set=Platypus	GT:AD:AF:DP	1/1:3,21:0.88:24
chr7	141752215	rs116536012	A	C	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=-0.502;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr7	141755358	rs67998329	T	C	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:93,216:0.70:309
chr7	141755795	rs2961081	C	T	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	141755987	rs2961080	G	T	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	141759229	rs144532936	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:7,73:0.91:80
chr7	141760293	rs2961073	TG	GC	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;JOINED;set=Intersection	GT:AD:AF:DP	0/1:70,37:0.35:107
chr7	141760348	rs10273420	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr7	141763252	rs73740247	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr7	141763311	rs185053832	C	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:164,106:0.39:270
chr7	141765272	rs112708443	C	A	5389.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr7	141765277	rs111921655	G	GC	5272.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:104,136:0.57:240
chr7	141765575	rs4507684	A	T	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:116,230:0.66:346
chr7	141765705	rs4276595	T	C	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:58,91:0.61:149
chr7	141765744	rs4276596	TT	GG	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	141765768	rs35268349	GT	G	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.029;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	141770670	rs73740263	T	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	141770893	rs7797111	G	A	4038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=1.288;QD=15.13;ReadPosRankSum=0.849;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:82,185:0.69:267
chr7	141776123	rs56332480	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr7	141776373	rs7779914	A	G	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr7	141791634	rs73524555	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-0.217;QD=7.11;ReadPosRankSum=-0.180;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	141793290	rs113045593	C	T	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:71,170:0.71:241
chr7	141794763	rs138070479	ATT	A	1466.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.73;SOR=2.608;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr7	141794790	rs4259331	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	141796131	rs6975672	G	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=26.11;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	141796250	rs6976953	C	T	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	141805522	rs36052135	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:76,135:0.64:211
chr7	141838362	rs6464465	C	G	4451.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:139,215:0.61:354
chr7	141844888	rs12154456	C	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr7	141854436	rs61281471	A	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	141854659	rs11770705	A	G	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.452;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:143,61:0.30:204
chr7	141857846	rs7811706	A	G	7970.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	141857985	rs10282156	A	G	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:95,192:0.67:287
chr7	141860861	rs34106041	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.445;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr7	141870134	rs56365887	G	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr7	141871251	rs7779634	A	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:62,117:0.65:179
chr7	141872042	rs74532061	C	T	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,123:0.67:183
chr7	141872996	rs73158454	A	G	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=1.578;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr7	141873000	rs9986803	T	A	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=1.205;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr7	141875431	rs12532575	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr7	141875594	rs6958066	C	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr7	141875671	rs6958102	C	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr7	141884682	rs76031018	CAT	C	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr7	141885944	rs111646116	CT	C	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.499;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.616;QD=9.32;ReadPosRankSum=0.755;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:24,78:0.76:102
chr7	141896059	rs4236467	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr7	141897595	rs3110843	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr7	141898522	rs2960768	T	A	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	141898680	rs2961065	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.63;ReadPosRankSum=-1.282;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	141899660	rs11402165	C	CT	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-1.589;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:48,63:0.57:111
chr7	141901322	rs6963175	G	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr7	141901506	rs6464469	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	141952110	rs1052406	G	A	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-0.235;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:101,146:0.59:247
chr7	141955250	rs4470937	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr7	141957504	rs7786497	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:134,78:0.37:212
chr7	142001030	rs56095598	A	G	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	142008403	rs376053846	C	G	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.432;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr7	142008408	rs370407588	T	G	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-1.424;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:70,28:0.29:98
chr7	142008434	.	G	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.532;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:115,28:0.20:143
chr7	142008440	.	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.749;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:119,28:0.19:147
chr7	142008442	.	T	C	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.997;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:123,28:0.19:151
chr7	142008453	.	C	G	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=4.864;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.107;QD=5.50;ReadPosRankSum=1.911;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:144,32:0.18:176
chr7	142008469	.	C	T	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=4.253;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.300;QD=3.85;ReadPosRankSum=2.138;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:203,38:0.16:241
chr7	142008477	.	G	A	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=6.328;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.372;QD=4.37;ReadPosRankSum=1.566;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:227,40:0.15:267
chr7	142008484	.	T	A	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.336;QD=3.69;ReadPosRankSum=0.618;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:253,46:0.15:299
chr7	142008491	.	A	G	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=5.698;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.432;QD=3.63;ReadPosRankSum=0.965;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:280,47:0.14:327
chr7	142008502	rs370591069	TA	CG	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=4.396;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.417;QD=3.43;ReadPosRankSum=-0.501;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:294,50:0.15:344
chr7	142008529	rs367608484	C	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=4.572;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.577;QD=2.60;ReadPosRankSum=-1.015;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:314,47:0.13:361
chr7	142008533	.	CCG	C	1012.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.086;ClippingRankSum=0.000;DP=359;ExcessHet=3.0103;FS=2.810;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.629;QD=2.83;ReadPosRankSum=-0.633;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:313,45:0.13:358
chr7	142008536	.	T	TAC	979.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.438;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.612;QD=2.77;ReadPosRankSum=-0.434;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:309,45:0.13:354
chr7	142008542	rs373709044	A	G	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.200;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:291,42:0.13:333
chr7	142008573	rs375153223	G	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.301;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:267,37:0.12:304
chr7	142008577	rs369645839	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=1.270;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:265,37:0.12:302
chr7	142008581	rs371566486	CT	AC	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.644;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.822;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:256,38:0.13:294
chr7	142008593	rs368999058	T	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.063;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:234,38:0.14:272
chr7	142008634	.	ACG	A	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.219;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:134,27:0.17:161
chr7	142008638	.	C	A	704.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.996;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr7	142008639	.	A	AGG	701.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.820;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr7	142008644	.	CA	TC	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=2.888;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.080;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:120,26:0.18:146
chr7	142008653	rs370721246	T	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.341;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:115,24:0.17:139
chr7	142008672	.	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.846;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr7	142008675	rs376217909	A	G	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.659;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr7	142008718	.	T	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-1.801;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr7	142008727	.	G	T	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-1.356;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:86,38:0.31:124
chr7	142008733	.	A	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.699;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr7	142008737	.	T	C	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.243;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:89,34:0.28:123
chr7	142008745	.	TC	CA	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=4.740;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.532;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:101,38:0.27:139
chr7	142008750	.	A	T	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.203;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:102,41:0.29:143
chr7	142008783	.	A	G	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=2.282;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:141,52:0.27:193
chr7	142008783	.	AAA	GAC	1984	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=1;MGOF=33;MMLQ=27;MQ=59.99;NF=16;NR=13;PP=1984;QD=70.2575129263;SC=CTTCTCACCTAAATCTCCAGA;SbPval=0.57;Source=Platypus;TC=108;TCF=59;TCR=49;TR=29;WE=142008811;WS=142008773;set=Platypus	GT:AD:AF:DP	0/1:79,29:0.27:108
chr7	142008785	.	A	C	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=2.725;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:147,52:0.26:199
chr7	142008799	rs17236	C	T	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.923;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:150,56:0.27:206
chr7	142008803	.	C	T	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.570;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:152,57:0.27:209
chr7	142008879	.	C	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=4.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=2.363;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:112,34:0.23:146
chr7	142008881	.	G	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=5.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=1.858;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:105,34:0.24:139
chr7	142008884	.	A	G	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.318;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr7	142008887	.	T	C	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.292;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr7	142008932	rs375535167	GC	G	479.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr7	142008934	.	A	T	488.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=6.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.466;SOR=1.635;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr7	142008939	.	A	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.201;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr7	142008941	.	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.476;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr7	142008959	.	G	A	118.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr7	142013384	rs361401	G	C	12735.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	142021521	rs72430962	TCA	T	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr7	142028108	rs361428	A	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	142028462	.	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-22.251;QD=0.23;ReadPosRankSum=-3.771;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:487,39:0.07:526
chr7	142028472	.	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DP=560;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-22.690;QD=0.47;ReadPosRankSum=-2.130;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:512,45:0.08:557
chr7	142028474	.	TC	GG	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DP=559;ExcessHet=3.0103;FS=3.743;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-22.669;QD=1.03;ReadPosRankSum=-1.708;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:511,45:0.08:556
chr7	142028485	.	C	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-21.858;QD=1.90;ReadPosRankSum=-1.979;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:524,61:0.10:585
chr7	142028490	.	A	C	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;ClippingRankSum=0.000;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-22.395;QD=1.85;ReadPosRankSum=-1.167;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:539,66:0.11:605
chr7	142028500	.	A	G	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;ClippingRankSum=0.000;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-23.039;QD=1.94;ReadPosRankSum=1.264;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:561,71:0.11:632
chr7	142028506	.	CA	TG	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DP=647;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-23.281;QD=1.85;ReadPosRankSum=3.267;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:574,71:0.11:645
chr7	142028533	.	C	A	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-22.810;QD=2.42;ReadPosRankSum=5.334;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:540,75:0.12:615
chr7	142028540	.	G	A	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-22.342;QD=2.57;ReadPosRankSum=4.614;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:520,73:0.12:593
chr7	142028542	.	G	T	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-22.205;QD=2.49;ReadPosRankSum=4.145;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:513,73:0.12:586
chr7	142028546	.	TC	CT	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DP=571;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-21.682;QD=2.55;ReadPosRankSum=3.129;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:497,72:0.13:569
chr7	142028551	.	CA	GG	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.731;ClippingRankSum=0.000;DP=547;ExcessHet=3.0103;FS=0.783;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-21.225;QD=2.78;ReadPosRankSum=1.399;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:474,72:0.13:546
chr7	142028555	.	C	T	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-21.159;QD=2.85;ReadPosRankSum=0.522;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:473,71:0.13:544
chr7	142028578	.	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-19.123;QD=0.55;ReadPosRankSum=-5.546;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:387,62:0.14:449
chr7	142032115	rs10567930	CTG	C	650.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr7	142032610	.	A	G	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=4.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.565;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:173,54:0.24:227
chr7	142032613	.	TG	CA	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=3.850;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=1.944;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:168,52:0.24:220
chr7	142032646	rs78118526	G	A	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.70;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	142032646	.	GTGTACATAGTGCAA	ATGTACATAGTGCAA,ATGTACATGGTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=27;MQ=59.83;NF=30,10;NR=59,12;PP=2962,702;QD=20;SC=TTAAAAATGTGTGTACATAGT;SbPval=0.55;Source=Platypus;TC=90;TCF=31;TCR=59;TR=89,22;WE=142032668;WS=142032623;set=Platypus	GT:AF:DP	0/1:0.99:90
chr7	142032654	rs190649630	A	G	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.461;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=0.726;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:87,33:0.28:120
chr7	142032658	.	C	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.369;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr7	142032660	.	A	G	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.052;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr7	142032677	rs375896144	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=2.313;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr7	142032713	rs371809716	A	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.471;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr7	142032729	.	A	G	222.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr7	142045446	rs56060483	G	C	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=0.886;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:173,67:0.28:240
chr7	142045449	rs371824542	A	G	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=1.263;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:184,69:0.27:253
chr7	142045518	.	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DP=404;set=Intersection	GT:AD:AF:DP	0/1:268,133:0.33:401
chr7	142045529	rs368250817	G	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:284,130:0.31:414
chr7	142045613	.	G	T	8999.77	.	AC=1;AF=0.500;AN=2;DP=544;set=Intersection	GT:AD:AF:DP	0/1:137,402:0.75:539
chr7	142045678	rs61750018	ACT	GTC	4015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=0.559;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.438;QD=5.49;ReadPosRankSum=1.190;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:494,238:0.33:732
chr7	142045683	rs61750019	A	G	8696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.425;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.437;QD=11.74;ReadPosRankSum=1.450;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:500,241:0.33:741
chr7	142045690	rs61750021	A	G	8894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.475;QD=11.60;ReadPosRankSum=2.401;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:526,241:0.31:767
chr7	142045692	rs61750022	AC	GT	8748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.696;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.561;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.459;QD=11.29;ReadPosRankSum=1.798;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:528,247:0.32:775
chr7	142045802	rs2855871	T	C	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.516;QD=6.76;ReadPosRankSum=1.120;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:236,143:0.38:379
chr7	142045848	rs17225	T	C	8674.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr7	142045899	rs2974900	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:208,101:0.33:309
chr7	142045912	rs374368376	A	G	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.481;QD=5.16;ReadPosRankSum=-1.091;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:206,93:0.31:299
chr7	142045924	rs1811089	A	G	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:88,193:0.69:281
chr7	142045951	.	T	TGCTCATTCATCCATGTGGCAACGTTACATCCTATGCTCATATTTAGAGTGTGGG	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=34.442;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-4.595;SOR=3.467;set=HC	GT:AD:AF:DP	0/1:143,31:0.18:174
chr7	142099425	.	A	G	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-7.408;QD=10.90;ReadPosRankSum=2.465;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr7	142099438	.	A	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-8.563;QD=3.09;ReadPosRankSum=4.941;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:216,72:0.25:288
chr7	142099484	.	G	C	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DP=627;ExcessHet=3.0103;FS=9.929;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-11.983;QD=1.80;ReadPosRankSum=0.870;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:490,119:0.20:609
chr7	142099533	.	T	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DP=897;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-22.591;QD=1.97;ReadPosRankSum=-0.088;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:788,104:0.12:892
chr7	142099537	.	G	T	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=902;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-22.708;QD=1.76;ReadPosRankSum=-0.934;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:799,99:0.11:898
chr7	142099541	.	T	C	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DP=916;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-24.465;QD=1.56;ReadPosRankSum=-0.631;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:821,91:0.10:912
chr7	142099548	.	A	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=940;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-25.364;QD=1.08;ReadPosRankSum=-2.315;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:850,86:0.09:936
chr7	142099968	rs361367	C	T	6556.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:107,178:0.62:285
chr7	142099988	rs361366	A	G	6126.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:97,161:0.62:258
chr7	142104144	rs361434	T	C	5437.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:121,249:0.67:370
chr7	142104571	rs361433	G	A	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:38,99:0.72:137
chr7	142120168	.	TCACA	T	4116.73	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chr7	142124170	rs361452	C	T	9799.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr7	142124424	rs361449	T	G	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:15,404:0.96:419
chr7	142124610	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=5.990;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-9.264;QD=0.41;ReadPosRankSum=0.378;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:89,8:0.08:97
chr7	142124612	.	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=5.990;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-9.167;QD=0.39;ReadPosRankSum=0.523;SOR=1.962;set=HC	GT:AD:AF:DP	0/1:87,8:0.08:95
chr7	142124616	.	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=5.767;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-9.192;QD=0.67;ReadPosRankSum=0.689;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:78,8:0.09:86
chr7	142124624	.	G	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=3.748;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-8.571;QD=1.33;ReadPosRankSum=1.061;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:67,8:0.11:75
chr7	142124626	.	A	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.454;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=3.760;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-8.393;QD=1.47;ReadPosRankSum=0.992;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:64,8:0.11:72
chr7	142124629	.	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.661;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-7.836;QD=2.01;ReadPosRankSum=1.034;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr7	142131702	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.394;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=37.872;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-11.900;QD=0.12;ReadPosRankSum=-2.877;SOR=4.426;set=HC	GT:AD:AF:DP	0/1:313,19:0.06:332
chr7	142131703	.	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.463;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=40.762;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-11.625;QD=0.25;ReadPosRankSum=-3.006;SOR=4.540;set=HC	GT:AD:AF:DP	0/1:316,20:0.06:336
chr7	142131709	.	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.024;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=37.648;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-11.185;QD=1.78;ReadPosRankSum=-4.186;SOR=3.264;set=HC	GT:AD:AF:DP	0/1:330,29:0.08:359
chr7	142131710	.	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.058;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=32.993;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-10.774;QD=2.25;ReadPosRankSum=-4.534;SOR=2.965;set=HC	GT:AD:AF:DP	0/1:330,31:0.09:361
chr7	142131734	.	A	T	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DP=437;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-9.978;QD=3.36;ReadPosRankSum=-2.998;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:372,63:0.14:435
chr7	142131738	.	G	GA	1494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=3.800;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-9.299;QD=3.31;ReadPosRankSum=-1.595;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:387,64:0.14:451
chr7	142131746	.	T	C	1749.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DP=461;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-9.107;QD=3.81;ReadPosRankSum=-0.367;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:388,71:0.15:459
chr7	142131747	rs368257836	G	A	1584.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-9.598;QD=3.45;ReadPosRankSum=0.079;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:390,69:0.15:459
chr7	142131779	rs370810757	A	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-10.158;QD=1.51;ReadPosRankSum=3.054;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:443,99:0.18:542
chr7	142131832	rs371240412	C	T	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-8.667;QD=4.93;ReadPosRankSum=-2.698;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:323,76:0.19:399
chr7	142131836	rs375356148	C	G	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-9.245;QD=4.95;ReadPosRankSum=-1.757;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:316,65:0.17:381
chr7	142131858	rs367836940	C	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-9.276;QD=3.12;ReadPosRankSum=-2.781;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:253,40:0.14:293
chr7	142131868	rs374575972	C	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.911;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=14.110;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-10.205;QD=2.09;ReadPosRankSum=-1.091;SOR=1.939;set=HC	GT:AD:AF:DP	0/1:236,27:0.10:263
chr7	142131872	rs368030585	G	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=12.461;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-11.419;QD=0.70;ReadPosRankSum=1.048;SOR=1.991;set=HC	GT:AD:AF:DP	0/1:223,19:0.08:242
chr7	142131885	.	A	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.880;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=15.158;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-10.541;QD=0.62;ReadPosRankSum=0.618;SOR=2.667;set=HC	GT:AD:AF:DP	0/1:192,16:0.08:208
chr7	142131889	.	A	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.421;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=10.775;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-12.758;QD=0.48;ReadPosRankSum=0.858;SOR=2.277;set=HC	GT:AD:AF:DP	0/1:173,14:0.07:187
chr7	142131894	.	AA	CG	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.647;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=10.753;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-12.863;QD=0.45;ReadPosRankSum=0.064;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:153,14:0.08:167
chr7	142131904	.	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=10.152;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.293;QD=0.45;ReadPosRankSum=-0.350;SOR=2.410;set=HC	GT:AD:AF:DP	0/1:118,11:0.09:129
chr7	142139271	rs146977487	TG	CA	8831.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;JOINED;set=Intersection	GT:AD:AF:DP	0/1:37,210:0.85:247
chr7	142139296	rs374460258	C	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=5.198;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-15.632;QD=4.13;ReadPosRankSum=-1.557;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:296,55:0.16:351
chr7	142139315	.	G	C	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-16.548;QD=4.07;ReadPosRankSum=-2.395;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:353,67:0.16:420
chr7	142139334	.	CG	C	1529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-17.555;QD=3.24;ReadPosRankSum=-2.750;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:405,67:0.14:472
chr7	142139337	.	C	CCA	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=9.049;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-16.998;QD=2.19;ReadPosRankSum=-0.613;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:408,55:0.12:463
chr7	142139339	.	GA	G	983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=7.485;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-17.071;QD=2.11;ReadPosRankSum=-0.829;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:412,55:0.12:467
chr7	142139348	rs73742284	C	A,T	12110.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.09;QD=24.77;SOR=0.748;set=HC	GT:AD:AF:DP	1/2:0,50,439:0.10,0.90:489
chr7	142139349	.	G	A	725.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DP=493;ExcessHet=3.0103;FS=4.556;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-17.973;QD=1.48;ReadPosRankSum=-0.109;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:442,50:0.10:492
chr7	142139357	.	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DP=495;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-17.278;QD=1.19;ReadPosRankSum=-1.232;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:448,46:0.09:494
chr7	142143639	rs377139967	T	G	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.942;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=42.027;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-6.814;QD=8.20;ReadPosRankSum=0.975;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr7	142143646	rs369634458	G	A	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=36.853;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-7.198;QD=7.47;ReadPosRankSum=1.357;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr7	142143675	.	A	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=40.529;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-10.240;QD=2.17;ReadPosRankSum=1.886;SOR=2.090;set=HC	GT:AD:AF:DP	0/1:228,32:0.12:260
chr7	142143681	.	A	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=41.618;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-11.162;QD=1.56;ReadPosRankSum=1.766;SOR=2.319;set=HC	GT:AD:AF:DP	0/1:264,31:0.11:295
chr7	142143684	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.943;ClippingRankSum=0.000;DP=319;ExcessHet=3.0103;FS=40.927;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-11.521;QD=1.19;ReadPosRankSum=1.319;SOR=2.323;set=HC	GT:AD:AF:DP	0/1:282,31:0.10:313
chr7	142143687	.	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=51.580;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-11.847;QD=1.10;ReadPosRankSum=1.517;SOR=2.878;set=HC	GT:AD:AF:DP	0/1:302,29:0.09:331
chr7	142143804	rs73742281	A	C	15335.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:1,586:1.00:587
chr7	142143879	rs376540425	A	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=30.011;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-17.295;QD=2.90;ReadPosRankSum=-4.730;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:271,74:0.21:345
chr7	142143906	.	GT	CC	4462.77	.	AC=1;AF=0.500;AN=2;DP=389;JOINED;set=Intersection	GT:AD:AF:DP	0/1:258,128:0.33:386
chr7	142143941	rs368607254	T	C	5620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-16.495;QD=10.59;ReadPosRankSum=0.403;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:300,231:0.44:531
chr7	142143953	rs371156869	G	A	6381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-15.881;QD=11.50;ReadPosRankSum=1.768;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:300,255:0.46:555
chr7	142143993	rs374220425	C	A	11691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-15.958;QD=17.99;ReadPosRankSum=1.926;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:331,319:0.49:650
chr7	142144004	rs368631399	T	A	6633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-15.970;QD=9.96;ReadPosRankSum=-0.323;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:329,337:0.51:666
chr7	142144022	rs371600923	T	C	11251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-13.707;QD=17.97;ReadPosRankSum=0.398;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:322,304:0.49:626
chr7	142144059	.	A	C	3754.77	.	AC=1;AF=0.500;AN=2;DP=449;set=Intersection	GT:AD:AF:DP	0/1:249,196:0.44:445
chr7	142144091	.	GG	AA	4676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.918;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-10.940;QD=16.47;ReadPosRankSum=-0.851;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:160,124:0.44:284
chr7	142144101	.	C	T	4231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.65;MQRankSum=-11.093;QD=17.20;ReadPosRankSum=-0.864;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:140,106:0.43:246
chr7	142144111	.	T	C	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-10.897;QD=16.44;ReadPosRankSum=-0.791;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:123,90:0.42:213
chr7	142144129	.	A	G	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-11.090;QD=16.67;ReadPosRankSum=-1.674;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:93,70:0.43:163
chr7	142144135	.	G	A	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.493;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-10.572;QD=17.01;ReadPosRankSum=-2.526;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:84,67:0.44:151
chr7	142144142	.	T	A	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=10.322;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-10.097;QD=18.30;ReadPosRankSum=-1.184;SOR=1.728;set=HC	GT:AD:AF:DP	0/1:79,53:0.40:132
chr7	142148850	.	G	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-9.485;QD=6.85;ReadPosRankSum=-1.192;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr7	142148878	rs370978147	T	C	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=19.698;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-13.392;QD=10.96;ReadPosRankSum=-1.579;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:136,61:0.31:197
chr7	142148881	rs374566766	C	A	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.137;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=21.437;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-13.399;QD=10.64;ReadPosRankSum=-1.909;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:145,69:0.32:214
chr7	142148919	rs376682174	C	T	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=5.879;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-18.018;QD=3.47;ReadPosRankSum=4.463;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:346,126:0.27:472
chr7	142148963	rs371195527	C	T	3458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.695;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-21.410;QD=5.08;ReadPosRankSum=4.681;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:557,124:0.18:681
chr7	142148969	.	AA	TC	3392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;ClippingRankSum=0.000;DP=711;ExcessHet=3.0103;FS=0.698;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-21.530;QD=4.79;ReadPosRankSum=2.077;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:585,124:0.17:709
chr7	142149001	rs367985593	G	A	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-18.733;QD=1.74;ReadPosRankSum=-9.225;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:618,93:0.13:711
chr7	142149017	.	G	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;ClippingRankSum=0.000;DP=647;ExcessHet=3.0103;FS=5.308;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-16.628;QD=1.06;ReadPosRankSum=-9.385;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:588,53:0.08:641
chr7	142149022	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;ClippingRankSum=0.000;DP=625;ExcessHet=3.0103;FS=8.248;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-17.198;QD=0.09;ReadPosRankSum=-8.411;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:579,39:0.06:618
chr7	142149160	rs17217	T	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:148,77:0.34:225
chr7	142149349	rs140504979	A	C	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	142162001	rs73742263	A	C	14321.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr7	142162050	rs71878	A	G	7366.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:197,347:0.64:544
chr7	142162148	rs71877	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:202,104:0.34:306
chr7	142162278	rs361443	C	T	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.731;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:308,122:0.28:430
chr7	142162306	rs361442	A	G	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.948;QD=4.10;ReadPosRankSum=-1.169;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:225,89:0.28:314
chr7	142168348	.	G	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=36.001;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-12.774;QD=3.49;ReadPosRankSum=-1.957;SOR=5.064;set=HC	GT:AD:AF:DP	0/1:144,21:0.13:165
chr7	142168351	.	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.604;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=25.732;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-13.106;QD=3.88;ReadPosRankSum=-2.625;SOR=3.200;set=HC	GT:AD:AF:DP	0/1:149,25:0.14:174
chr7	142168362	.	A	T	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=5.089;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-13.588;QD=6.92;ReadPosRankSum=-4.419;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:182,47:0.21:229
chr7	142168365	.	C	T	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-13.041;QD=7.48;ReadPosRankSum=-5.018;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:191,56:0.23:247
chr7	142168371	.	C	T	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-12.966;QD=7.48;ReadPosRankSum=-5.647;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:204,71:0.26:275
chr7	142168414	rs374005717	G	C	3721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-11.746;QD=6.68;ReadPosRankSum=-2.737;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:344,213:0.38:557
chr7	142168429	rs55634899	A	G	28036.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.72;QD=44.15;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,635:1.00:635
chr7	142168452	rs361355	C	A	28647.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.60;QD=44.42;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,645:1.00:645
chr7	142168466	.	A	C	9622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=628;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-11.579;QD=15.40;ReadPosRankSum=1.050;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:367,258:0.41:625
chr7	142168474	rs377511417	G	A	9602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-10.974;QD=16.14;ReadPosRankSum=-1.378;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:340,255:0.43:595
chr7	142168498	.	GCCA	G	6777.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-9.716;QD=14.42;ReadPosRankSum=-7.182;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:291,179:0.38:470
chr7	142168502	.	T	TTTC	3381.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.932;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=145.437;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-9.306;QD=8.78;ReadPosRankSum=1.113;SOR=4.969;set=HC	GT:AD:AF:DP	0/1:283,102:0.26:385
chr7	142168508	.	TC	T	2709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.112;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=115.281;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-8.434;QD=7.88;ReadPosRankSum=0.417;SOR=4.774;set=HC	GT:AD:AF:DP	0/1:262,82:0.24:344
chr7	142168511	.	T	A	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.266;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=109.626;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-8.283;QD=7.83;ReadPosRankSum=-0.196;SOR=4.681;set=HC	GT:AD:AF:DP	0/1:249,81:0.25:330
chr7	142168515	.	T	TC	2533.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.144;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=101.756;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-8.218;QD=8.20;ReadPosRankSum=-1.693;SOR=4.562;set=HC	GT:AD:AF:DP	0/1:232,77:0.25:309
chr7	142168516	.	A	G	2488.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.834;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=100.533;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-8.176;QD=8.24;ReadPosRankSum=-1.467;SOR=4.787;set=HC	GT:AD:AF:DP	0/1:232,70:0.23:302
chr7	142168518	.	A	C	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.084;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=89.517;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-7.931;QD=7.63;ReadPosRankSum=-1.477;SOR=4.587;set=HC	GT:AD:AF:DP	0/1:224,64:0.22:288
chr7	142168523	.	T	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.063;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=86.139;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-7.794;QD=6.21;ReadPosRankSum=-0.848;SOR=4.827;set=HC	GT:AD:AF:DP	0/1:228,55:0.19:283
chr7	142168524	.	G	A	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.980;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=74.754;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-8.174;QD=6.00;ReadPosRankSum=-0.071;SOR=4.564;set=HC	GT:AD:AF:DP	0/1:223,49:0.18:272
chr7	142168527	.	A	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=66.814;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-8.439;QD=4.69;ReadPosRankSum=-0.125;SOR=4.433;set=HC	GT:AD:AF:DP	0/1:223,46:0.17:269
chr7	142168530	.	T	G	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.387;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=66.817;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-8.422;QD=4.70;ReadPosRankSum=-1.128;SOR=4.378;set=HC	GT:AD:AF:DP	0/1:217,45:0.17:262
chr7	142168531	.	A	G	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.392;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=61.970;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-8.599;QD=4.62;ReadPosRankSum=-0.936;SOR=4.300;set=HC	GT:AD:AF:DP	0/1:216,43:0.17:259
chr7	142168538	.	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.477;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=61.910;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-8.122;QD=4.70;ReadPosRankSum=-2.182;SOR=4.693;set=HC	GT:AD:AF:DP	0/1:194,37:0.16:231
chr7	142168540	.	C	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.005;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=59.548;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-8.269;QD=4.17;ReadPosRankSum=-2.248;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:190,35:0.16:225
chr7	142168544	.	T	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.792;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=49.029;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-8.824;QD=3.47;ReadPosRankSum=-1.925;SOR=4.315;set=HC	GT:AD:AF:DP	0/1:185,30:0.14:215
chr7	142168662	rs73742240	CG	TC	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr7	142168799	.	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-6.883;QD=1.51;ReadPosRankSum=1.037;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:137,16:0.10:153
chr7	142168803	.	C	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-6.615;QD=1.65;ReadPosRankSum=1.213;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:128,16:0.11:144
chr7	142168818	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-6.402;QD=2.61;ReadPosRankSum=1.229;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:113,17:0.13:130
chr7	142168819	rs361350	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-0.923;QD=3.64;ReadPosRankSum=-2.359;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr7	142168825	.	C	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-6.093;QD=2.93;ReadPosRankSum=1.176;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:104,17:0.14:121
chr7	142168835	.	CA	TG	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.999;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-5.986;QD=3.21;ReadPosRankSum=1.280;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:101,17:0.14:118
chr7	142168839	.	G	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-5.840;QD=3.40;ReadPosRankSum=0.819;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:97,17:0.15:114
chr7	142168856	rs73742239	C	G	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:17,94:0.85:111
chr7	142168862	.	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.786;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-5.697;QD=4.39;ReadPosRankSum=-0.643;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr7	142176378	rs361393	A	G	15460.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;MQ=59.88;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr7	142180578	.	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=17.159;ClippingRankSum=0.000;DP=849;ExcessHet=3.0103;FS=31.859;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-28.058;QD=0.17;ReadPosRankSum=-5.430;SOR=5.116;set=HC	GT:AD:AF:DP	0/1:784,59:0.07:843
chr7	142180584	rs373875376	TCC	T	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.492;ClippingRankSum=0.000;DB;DP=891;ExcessHet=3.0103;FS=38.083;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-28.836;QD=0.41;ReadPosRankSum=-5.419;SOR=5.034;set=HC	GT:AD:AF:DP	0/1:817,68:0.08:885
chr7	142180591	.	TGG	T	838.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.990;ClippingRankSum=0.000;DP=926;ExcessHet=3.0103;FS=41.601;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-29.848;QD=0.91;ReadPosRankSum=-5.548;SOR=5.337;set=HC	GT:AD:AF:DP	0/1:842,77:0.08:919
chr7	142180593	.	G	GTTTT	853.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=17.382;ClippingRankSum=0.000;DP=917;ExcessHet=3.0103;FS=41.449;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-29.700;QD=0.94;ReadPosRankSum=-5.265;SOR=5.351;set=HC	GT:AD:AF:DP	0/1:833,77:0.08:910
chr7	142180596	.	G	A	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.864;ClippingRankSum=0.000;DP=943;ExcessHet=3.0103;FS=38.851;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-27.916;QD=1.22;ReadPosRankSum=-5.609;SOR=4.748;set=HC	GT:AD:AF:DP	0/1:843,93:0.10:936
chr7	142180618	.	TG	CA	5376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.196;ClippingRankSum=0.000;DP=1048;ExcessHet=3.0103;FS=8.836;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-23.889;QD=5.17;ReadPosRankSum=-4.733;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:855,186:0.18:1041
chr7	142180625	.	T	C	6134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.759;ClippingRankSum=0.000;DP=1053;ExcessHet=3.0103;FS=9.641;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-22.755;QD=5.87;ReadPosRankSum=-2.911;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:840,205:0.20:1045
chr7	142180633	.	G	T	6699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.695;ClippingRankSum=0.000;DP=1010;ExcessHet=3.0103;FS=12.392;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-21.553;QD=6.68;ReadPosRankSum=-0.429;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:788,215:0.21:1003
chr7	142180635	.	T	G	6843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;ClippingRankSum=0.000;DP=995;ExcessHet=3.0103;FS=12.411;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-21.171;QD=6.93;ReadPosRankSum=-0.001;SOR=1.390;set=HC	GT:AD:AF:DP	0/1:770,218:0.22:988
chr7	142180640	.	GA	TG	7587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;ClippingRankSum=0.000;DP=1000;ExcessHet=3.0103;FS=13.614;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-20.109;QD=7.65;ReadPosRankSum=1.943;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:764,228:0.23:992
chr7	142180646	.	AG	CT	8499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;ClippingRankSum=0.000;DP=976;ExcessHet=3.0103;FS=14.603;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-19.145;QD=8.77;ReadPosRankSum=1.991;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:716,253:0.26:969
chr7	142180704	rs368420989	G	T	7006.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:424,361:0.46:785
chr7	142180737	rs372013265	T	A	5944.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:354,280:0.44:634
chr7	142180770	rs375278683	T	C	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:346,172:0.33:518
chr7	142180818	rs377067235	AAGG	A	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-18.911;QD=1.11;ReadPosRankSum=5.461;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:494,58:0.11:552
chr7	142180849	.	T	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DP=536;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-22.401;QD=1.39;ReadPosRankSum=1.040;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:481,54:0.10:535
chr7	142180856	rs373727238	GC	G	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-22.894;QD=1.34;ReadPosRankSum=-0.114;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:475,52:0.10:527
chr7	142180873	.	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DP=488;ExcessHet=3.0103;FS=9.525;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-22.020;QD=0.54;ReadPosRankSum=-1.351;SOR=1.672;set=HC	GT:AD:AF:DP	0/1:448,39:0.08:487
chr7	142180876	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.042;ClippingRankSum=0.000;DP=489;ExcessHet=3.0103;FS=7.648;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-22.046;QD=0.37;ReadPosRankSum=-1.092;SOR=1.682;set=HC	GT:AD:AF:DP	0/1:452,36:0.07:488
chr7	142180877	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DP=484;ExcessHet=3.0103;FS=7.560;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-21.932;QD=0.22;ReadPosRankSum=-1.416;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:447,36:0.07:483
chr7	142197606	rs373222208	T	C	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.944;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=6.027;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-3.608;QD=18.77;ReadPosRankSum=0.955;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:54,55:0.50:109
chr7	142197613	rs376535639	T	C	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-4.099;QD=8.28;ReadPosRankSum=1.593;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr7	142197753	.	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-7.716;QD=0.37;ReadPosRankSum=-3.095;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:211,18:0.08:229
chr7	142197770	.	A	ATT	350.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-7.136;QD=1.51;ReadPosRankSum=-2.593;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:208,25:0.11:233
chr7	142197771	.	GCA	G	476.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-7.401;QD=1.91;ReadPosRankSum=-2.012;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:224,25:0.10:249
chr7	142197782	rs377242129	T	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-6.630;QD=2.25;ReadPosRankSum=-1.582;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:223,31:0.12:254
chr7	142197807	rs369644106	C	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.784;QD=1.73;ReadPosRankSum=1.997;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:232,28:0.11:260
chr7	142197808	rs371965058	T	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.784;QD=1.71;ReadPosRankSum=1.965;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:232,28:0.11:260
chr7	142197812	.	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.797;QD=1.57;ReadPosRankSum=1.908;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:233,28:0.11:261
chr7	142197813	rs369221441	C	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.809;QD=1.61;ReadPosRankSum=1.895;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:234,28:0.11:262
chr7	142197835	rs17280	C	T	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr7	142197845	rs372935433	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.711;QD=1.81;ReadPosRankSum=-1.828;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:218,27:0.11:245
chr7	142197846	rs375613822	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.659;QD=1.84;ReadPosRankSum=-2.124;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:214,27:0.11:241
chr7	142197848	rs368955078	A	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.633;QD=1.91;ReadPosRankSum=-2.553;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:212,27:0.11:239
chr7	142197861	rs373311950	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-6.168;QD=1.45;ReadPosRankSum=-2.842;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:207,22:0.10:229
chr7	142197871	.	A	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-8.007;QD=0.65;ReadPosRankSum=-0.298;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:206,13:0.06:219
chr7	142197897	rs17279	C	T	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.613;QD=7.42;ReadPosRankSum=0.358;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:130,77:0.37:207
chr7	142197986	rs148941368	T	C	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	142206473	rs11764626	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr7	142211193	rs6977669	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr7	142231625	rs17249	C	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:72,109:0.60:181
chr7	142231694	.	T	C	4386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=9.304;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-3.812;QD=12.61;ReadPosRankSum=0.260;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:226,122:0.35:348
chr7	142231698	.	G	A	4552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=12.308;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-2.948;QD=12.75;ReadPosRankSum=1.215;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:233,124:0.35:357
chr7	142231701	rs17248	G	T	6583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=10.446;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-3.306;QD=18.14;ReadPosRankSum=-0.886;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:156,207:0.57:363
chr7	142231703	.	G	T	4548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=14.408;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-2.884;QD=12.67;ReadPosRankSum=1.634;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:232,127:0.35:359
chr7	142231740	rs372096379	T	C	3974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=9.306;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.964;QD=11.94;ReadPosRankSum=0.568;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:202,131:0.39:333
chr7	142231744	rs376782927	A	G	3976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=8.547;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.912;QD=12.27;ReadPosRankSum=0.080;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:194,130:0.40:324
chr7	142231762	.	A	T	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.242;QD=11.03;ReadPosRankSum=1.527;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:164,89:0.35:253
chr7	142231769	.	T	A	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.689;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=12.484;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.505;QD=12.29;ReadPosRankSum=2.917;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:152,73:0.32:225
chr7	142231771	.	TT	CG	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.903;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=11.411;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.524;QD=11.65;ReadPosRankSum=3.059;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:148,70:0.32:218
chr7	142231780	.	CA	TC	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.758;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=5.878;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.477;QD=12.40;ReadPosRankSum=2.681;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:120,59:0.33:179
chr7	142231793	.	A	AT	1799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=4.160;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.446;QD=11.84;ReadPosRankSum=1.370;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:101,51:0.34:152
chr7	142231795	.	G	T	1799.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.006;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.409;QD=12.08;ReadPosRankSum=0.600;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:98,51:0.34:149
chr7	142231796	.	CCA	C	1784.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.364;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=3.181;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.445;QD=11.98;ReadPosRankSum=0.512;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:99,50:0.34:149
chr7	142231800	.	G	GA	1670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.042;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.604;QD=11.44;ReadPosRankSum=1.997;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:101,45:0.31:146
chr7	142231805	.	C	CTG	1536.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.512;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.416;QD=12.20;ReadPosRankSum=-0.566;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:83,43:0.34:126
chr7	142231806	.	C	G	1509.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.550;QD=11.98;ReadPosRankSum=-0.370;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:86,40:0.32:126
chr7	142231808	.	GCC	G	1374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.594;QD=10.66;ReadPosRankSum=-0.657;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:89,40:0.31:129
chr7	142231826	.	T	C	417.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:78,29:0.27:107
chr7	142232163	rs144354683	T	C	107.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	142242670	rs17219	T	G	10285.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr7	142247134	rs361363	T	C	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	142247347	rs361359	AT	CC	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=9.688;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-4.779;QD=3.49;ReadPosRankSum=1.326;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:312,55:0.15:367
chr7	142247380	rs374995027	T	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=12.823;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.381;QD=2.70;ReadPosRankSum=1.185;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:303,53:0.15:356
chr7	142247396	.	A	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=17.392;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-4.101;QD=1.71;ReadPosRankSum=2.324;SOR=1.717;set=HC	GT:AD:AF:DP	0/1:328,39:0.11:367
chr7	142247410	rs56172210	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=18.809;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-5.293;QD=1.15;ReadPosRankSum=-0.248;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:335,36:0.10:371
chr7	142247417	rs370449003	AC	A	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.822;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=18.715;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-6.309;QD=1.07;ReadPosRankSum=-1.716;SOR=1.878;set=HC	GT:AD:AF:DP	0/1:346,35:0.09:381
chr7	142247425	.	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=15.282;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-7.146;QD=0.97;ReadPosRankSum=-3.299;SOR=1.815;set=HC	GT:AD:AF:DP	0/1:344,34:0.09:378
chr7	142247432	.	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.904;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=19.886;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-8.640;QD=0.44;ReadPosRankSum=-3.377;SOR=2.142;set=HC	GT:AD:AF:DP	0/1:344,28:0.08:372
chr7	142247529	.	GGC	G	139.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-8.335;QD=0.52;ReadPosRankSum=-2.023;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:248,21:0.08:269
chr7	142247530	.	G	A	598.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-8.334;QD=2.23;ReadPosRankSum=-4.666;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:237,32:0.12:269
chr7	142247535	.	G	GAA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-8.651;QD=1.17;ReadPosRankSum=-1.935;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:242,23:0.09:265
chr7	142247538	.	CTG	C	760.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-7.696;QD=2.89;ReadPosRankSum=-2.441;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:231,32:0.12:263
chr7	142247539	.	T	C	475.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-8.703;QD=1.82;ReadPosRankSum=-1.585;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:236,26:0.10:262
chr7	142247540	.	G	A	457.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-8.534;QD=1.80;ReadPosRankSum=-1.574;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:228,26:0.10:254
chr7	142247541	.	C	CAT	763.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-7.211;QD=2.98;ReadPosRankSum=-2.295;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:224,32:0.12:256
chr7	142247546	.	C	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.529;QD=2.83;ReadPosRankSum=-1.627;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:229,32:0.12:261
chr7	142247554	rs10265119	C	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-6.558;QD=4.84;ReadPosRankSum=-1.214;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:213,47:0.18:260
chr7	142247567	rs372792593	A	G	3691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.958;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=6.143;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-10.626;QD=14.42;ReadPosRankSum=1.247;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:158,98:0.38:256
chr7	142247571	rs376050671	A	G	3736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.566;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-10.619;QD=14.43;ReadPosRankSum=1.955;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:156,103:0.40:259
chr7	142247605	rs370122363	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:166,48:0.22:214
chr7	142250938	rs361439	T	G	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	142250988	rs361437	G	A	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr7	142251132	rs361436	G	T	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	142326607	rs17260	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:22,65:0.75:87
chr7	142326909	rs76454382	C	G	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	142353577	rs71522189	C	CTTTGT	2813.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:4,102:0.96:106
chr7	142364553	rs17254	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr7	142378708	rs361418	T	G	11018.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr7	142378831	rs76429157	C	G	13797.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr7	142423161	rs112325538	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	142423289	rs17251	C	A	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	142423562	rs62001054	C	T	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	142423886	.	A	G	944.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr7	142428611	rs361326	C	T	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	142428626	rs361327	A	C	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	142448199	rs112413030	GGGTGGAAA	G	2079.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	142458304	.	T	A	1546	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=4;MGOF=40;MMLQ=21;MQ=54.68;NF=27;NR=15;PP=1546;QD=37.6374098226;SC=AGCCTCACTGTGCTTGTTAAG;SbPval=0.62;Source=Platypus;TC=97;TCF=61;TCR=36;TR=42;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:55,42:0.43:97
chr7	142458316	.	A	T	1546	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=4;MGOF=40;MMLQ=26;MQ=54.88;NF=36;NR=22;PP=1546;QD=27.2546760784;SC=CTTGTTAAGGATTTCTAATTA;SbPval=0.55;Source=Platypus;TC=121;TCF=75;TCR=46;TR=58;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:63,58:0.48:121
chr7	142458371	rs367779270	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:174,34:0.16:208
chr7	142458409	rs200665515	C	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-3.931;QD=1.62;ReadPosRankSum=0.016;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:269,31:0.10:300
chr7	142458412	rs202003805	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.380;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-4.404;QD=1.60;ReadPosRankSum=0.548;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:268,32:0.11:300
chr7	142458414	.	C	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=2.380;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-4.496;QD=1.70;ReadPosRankSum=1.069;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:268,32:0.11:300
chr7	142458437	rs372637371	C	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-6.742;QD=2.29;ReadPosRankSum=3.538;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:263,40:0.13:303
chr7	142458511	rs138464021	G	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-13.977;QD=1.98;ReadPosRankSum=0.292;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:388,56:0.13:444
chr7	142458523	rs149246646	T	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=4.726;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-15.621;QD=1.64;ReadPosRankSum=0.655;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:383,43:0.10:426
chr7	142458526	rs144422014	AC	GG	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=4.693;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-15.621;QD=1.42;ReadPosRankSum=-0.050;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:383,43:0.10:426
chr7	142458531	rs147366981	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=4.918;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-16.176;QD=1.46;ReadPosRankSum=-0.124;SOR=1.451;set=HC	GT:AD:AF:DP	0/1:370,39:0.10:409
chr7	142458542	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-17.174;QD=0.92;ReadPosRankSum=-1.084;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:347,34:0.09:381
chr7	142458697	rs373299247	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-6.389;QD=5.88;ReadPosRankSum=1.117;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr7	142458700	rs376748793	G	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-6.389;QD=5.95;ReadPosRankSum=1.609;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr7	142458737	rs370066365	C	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-1.577;QD=12.53;ReadPosRankSum=-1.508;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr7	142458739	rs374137559	T	C	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-1.882;QD=11.06;ReadPosRankSum=-1.324;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr7	142458829	rs377669553	A	G	2653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-6.029;QD=11.15;ReadPosRankSum=0.192;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:163,75:0.32:238
chr7	142458837	rs370580835	A	T	2579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-6.153;QD=10.75;ReadPosRankSum=-0.334;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:166,74:0.31:240
chr7	142458841	rs375181092	AT	A	2567.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:161,71:0.31:232
chr7	142458873	rs373388800	A	C	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-9.329;QD=8.90;ReadPosRankSum=-1.149;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:145,60:0.29:205
chr7	142458881	rs376074412	A	T	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-8.404;QD=9.13;ReadPosRankSum=0.019;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:125,41:0.25:166
chr7	142458884	rs370405149	C	G	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.373;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-8.793;QD=8.54;ReadPosRankSum=-0.372;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:123,41:0.25:164
chr7	142458886	rs373808731	T	A	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.354;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-8.808;QD=8.23;ReadPosRankSum=-0.550;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr7	142458887	rs368632869	T	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.836;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-9.122;QD=7.99;ReadPosRankSum=0.090;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:122,38:0.24:160
chr7	142458898	rs371109898	A	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-9.712;QD=7.53;ReadPosRankSum=-0.320;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr7	142458902	.	G	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=5.443;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-10.013;QD=6.74;ReadPosRankSum=0.210;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr7	142458906	rs374242167	T	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-9.301;QD=7.16;ReadPosRankSum=-0.217;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr7	142458910	rs368381895	C	T	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-8.828;QD=7.43;ReadPosRankSum=0.269;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr7	142458929	rs371622191	G	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-6.303;QD=8.27;ReadPosRankSum=-1.088;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr7	142458938	rs374770738	T	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.656;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-5.240;QD=8.87;ReadPosRankSum=-0.612;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr7	142458967	rs367567937	A	T	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-4.413;QD=7.53;ReadPosRankSum=0.641;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr7	142458972	rs371766102	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.641;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-4.701;QD=7.46;ReadPosRankSum=1.467;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr7	142458987	rs375094420	C	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr7	142459042	rs369844822	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=-0.760;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	142460313	rs6666	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=3.653;QD=0.05;ReadPosRankSum=-0.792;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:661,89:0.12:750
chr7	142460335	rs201550522	A	G	11009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-6.293;QD=16.78;ReadPosRankSum=4.195;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:265,391:0.60:656
chr7	142460339	rs200973660	G	A	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-1.357;QD=3.28;ReadPosRankSum=1.912;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:491,158:0.24:649
chr7	142460369	rs201719096	G	A	7712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=9.352;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-7.253;QD=16.48;ReadPosRankSum=0.632;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:230,238:0.51:468
chr7	142460374	rs200070487	A	G	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=10.490;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-2.235;QD=3.69;ReadPosRankSum=0.150;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:378,84:0.18:462
chr7	142460388	rs1804561	C	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=9.698;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-3.401;QD=3.37;ReadPosRankSum=-3.129;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:365,67:0.16:432
chr7	142460394	rs377124851	T	C	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=27.155;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-7.434;QD=6.00;ReadPosRankSum=-2.794;SOR=1.836;set=HC	GT:AD:AF:DP	0/1:313,77:0.20:390
chr7	142460412	.	A	C	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.274;ClippingRankSum=0.000;DP=433;ExcessHet=3.0103;FS=37.174;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-16.531;QD=3.18;ReadPosRankSum=-2.377;SOR=3.380;set=HC	GT:AD:AF:DP	0/1:374,55:0.13:429
chr7	142460415	.	T	C	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.201;ClippingRankSum=0.000;DP=438;ExcessHet=3.0103;FS=29.536;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-17.417;QD=2.16;ReadPosRankSum=-2.958;SOR=3.213;set=HC	GT:AD:AF:DP	0/1:383,51:0.12:434
chr7	142460865	rs6667	T	C	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:243,151:0.38:394
chr7	142468205	.	A	C	3436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.911;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-14.570;QD=10.32;ReadPosRankSum=5.265;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:232,101:0.30:333
chr7	142468206	.	G	C	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.137;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.763;QD=3.16;ReadPosRankSum=3.040;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:283,47:0.14:330
chr7	142468213	.	A	G	3234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.719;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-15.003;QD=9.14;ReadPosRankSum=4.458;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:257,97:0.27:354
chr7	142468218	.	G	A	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-9.241;QD=2.58;ReadPosRankSum=4.146;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:339,50:0.13:389
chr7	142468221	.	T	A	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-9.904;QD=2.43;ReadPosRankSum=3.988;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:352,51:0.13:403
chr7	142468228	.	A	G	2871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-16.760;QD=6.57;ReadPosRankSum=4.666;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:348,89:0.20:437
chr7	142468232	.	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-11.840;QD=0.89;ReadPosRankSum=1.284;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:409,38:0.09:447
chr7	142468241	.	C	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=482;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-12.143;QD=0.21;ReadPosRankSum=-0.859;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:444,34:0.07:478
chr7	142470274	rs113056236	A	C	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-1.418;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:19,51:0.73:70
chr7	142470290	rs11769872	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=2.426;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr7	142470364	rs11770572	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.075;QD=1.57;ReadPosRankSum=0.441;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:101,23:0.19:124
chr7	142470442	.	CA	AG	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=11.091;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-7.093;QD=0.68;ReadPosRankSum=-1.852;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:57,6:0.10:63
chr7	142470450	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=10.989;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-6.853;QD=1.08;ReadPosRankSum=-1.387;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:53,6:0.10:59
chr7	142470465	.	C	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.715;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=15.379;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-7.718;QD=4.38;ReadPosRankSum=-0.654;SOR=3.562;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr7	142470467	.	T	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.093;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=15.366;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-7.897;QD=4.79;ReadPosRankSum=-0.290;SOR=3.572;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr7	142470544	rs377545759	C	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-3.706;QD=2.75;ReadPosRankSum=-3.889;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:334,86:0.20:420
chr7	142470582	rs374775884	T	C	11327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.303;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-11.614;QD=14.09;ReadPosRankSum=3.239;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:489,315:0.39:804
chr7	142470585	.	G	A	5050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-2.339;QD=6.06;ReadPosRankSum=2.410;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:676,158:0.19:834
chr7	142470597	.	G	A	13198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.843;ClippingRankSum=0.000;DP=1012;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-12.242;QD=13.41;ReadPosRankSum=6.675;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:613,371:0.38:984
chr7	142470607	.	A	T	5704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DP=1179;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-2.134;QD=4.91;ReadPosRankSum=5.638;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:958,203:0.17:1161
chr7	142470612	rs367807406	A	G	7909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.662;ClippingRankSum=0.000;DB;DP=1249;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-5.897;QD=6.44;ReadPosRankSum=5.745;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:936,293:0.24:1229
chr7	142470614	.	C	T	5737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040;ClippingRankSum=0.000;DP=1287;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-1.871;QD=4.53;ReadPosRankSum=5.931;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:1051,217:0.17:1268
chr7	142470645	rs368963025	T	C	11971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.879;ClippingRankSum=0.000;DB;DP=1636;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-16.503;QD=7.43;ReadPosRankSum=-0.754;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:1114,498:0.31:1612
chr7	142470646	rs375588069	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.984;ClippingRankSum=0.000;DB;DP=1643;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-16.182;QD=0.43;ReadPosRankSum=-2.650;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:1385,225:0.14:1610
chr7	142470683	.	C	CCT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;ClippingRankSum=0.000;DP=1485;ExcessHet=3.0103;FS=15.387;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-18.972;QD=0.05;ReadPosRankSum=-7.899;SOR=2.491;set=HC	GT:AD:AF:DP	0/1:1314,111:0.08:1425
chr7	142470685	.	ATG	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.892;ClippingRankSum=0.000;DP=1420;ExcessHet=3.0103;FS=12.934;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-21.886;QD=0.04;ReadPosRankSum=-9.907;SOR=2.435;set=HC	GT:AD:AF:DP	0/1:1292,108:0.08:1400
chr7	142470691	rs10952531	G	C	5600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560;ClippingRankSum=0.000;DB;DP=1316;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=3.984;QD=4.29;ReadPosRankSum=0.736;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:929,377:0.29:1306
chr7	142470732	rs2886952	C	T	14046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.110;QD=15.09;ReadPosRankSum=0.601;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:285,646:0.69:931
chr7	142478608	rs73742439	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	142478755	rs73742441	T	C	11790.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	142478771	rs201689354	A	AC	12488.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	142478853	.	T	C	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-17.026;QD=1.84;ReadPosRankSum=-3.244;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:591,71:0.11:662
chr7	142478865	.	T	C	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-17.077;QD=2.30;ReadPosRankSum=-1.935;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:666,89:0.12:755
chr7	142478881	.	T	TAG	3205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DP=894;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-16.051;QD=3.61;ReadPosRankSum=-0.177;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:769,118:0.13:887
chr7	142478897	rs73742442	T	C	29979.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.559;ClippingRankSum=0.000;DB;DP=1077;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;MQRankSum=-0.444;QD=28.15;ReadPosRankSum=1.139;SOR=0.066;set=HC	GT:AD:AF:DP	1/1:3,1062:1.00:1065
chr7	142478897	.	TCTCAGGCCCCAACCACCCCCCGTTACTGGCAGACAT	CCTCAGGCCCCAACCACCCCCCGTTACTGGCAGACAT,CCTCAGGCTCCAACCATACCCCGTTCCTGGCAGATGC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=26;MQ=58.16;NF=284,45;NR=246,38;PP=2962,2897;QD=20;SC=TCATGCCCTGTCTCAGGCCCC;SbPval=0.51;Source=Platypus;TC=531;TCF=285;TCR=246;TR=530,83;WE=142478941;WS=142478887;set=Platypus	GT:AF:DP	0/1:1.00:531
chr7	142478905	.	C	T	3775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DP=1143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-19.779;QD=3.34;ReadPosRankSum=2.992;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:973,159:0.14:1132
chr7	142478913	.	CC	TA	4027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DP=1153;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-20.513;QD=3.53;ReadPosRankSum=3.954;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:976,166:0.15:1142
chr7	142479912	rs200484890	C	G	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.499;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-6.478;QD=6.68;ReadPosRankSum=2.430;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:313,88:0.22:401
chr7	142479915	rs377017470	T	C	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.431;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=17.261;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-11.091;QD=3.32;ReadPosRankSum=-3.674;SOR=2.097;set=HC	GT:AD:AF:DP	0/1:354,54:0.13:408
chr7	142479917	rs369591097	C	T	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.457;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-6.376;QD=6.34;ReadPosRankSum=1.196;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:326,87:0.21:413
chr7	142479940	rs58649169	C	T	11298.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:114,321:0.74:435
chr7	142479954	rs201779716	C	T	4681.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:305,154:0.34:459
chr7	142479969	rs147670699	C	A	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:320,182:0.36:502
chr7	142480002	rs199512312	C	A	8328.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:346,300:0.46:646
chr7	142480012	rs56146961	C	T	10308.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:300,353:0.54:653
chr7	142480034	rs10808019	C	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=4.742;QD=1.20;ReadPosRankSum=-2.643;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:526,101:0.16:627
chr7	142480067	rs201659809	C	T	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:272,169:0.38:441
chr7	142480079	rs371397657	T	G	4202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=7.211;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-16.239;QD=11.24;ReadPosRankSum=-6.382;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:245,129:0.34:374
chr7	142480083	.	A	C	3962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=8.936;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-17.116;QD=11.62;ReadPosRankSum=-5.548;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:234,107:0.31:341
chr7	142480095	rs374574556	G	A	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=9.838;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-16.585;QD=4.88;ReadPosRankSum=-4.208;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:214,75:0.26:289
chr7	142480114	rs10808020	G	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr7	142480137	rs57353422	A	G	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=45.84;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	142480137	.	AGAACTACTGAG	GGAAGTACTGAC,GGAAGTACTGAG	2032	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=40;MMLQ=27;MQ=58.42;NF=4,11;NR=13,56;PP=636,2032;QD=41.1451691095;SC=TTCAGCCCAGAGAACTACTGA;SbPval=0.57;Source=Platypus;TC=78;TCF=18;TCR=60;TR=17,67;WE=142480156;WS=142480104;set=Platypus	GT:AF:DP	0/1:0.22:78
chr7	142480141	rs55775033	C	G	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=48.12;SOR=2.932;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	142480148	rs10808021	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.030;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.724;QD=5.24;ReadPosRankSum=-0.124;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:44,21:0.32:65
chr7	142481234	rs57725689	T	C	33219.77	.	AC=2;AF=1.00;AN=2;DB;DP=1248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=26.86;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,1237:1.00:1237
chr7	142481301	rs4726590	C	G	15389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=1247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=10.077;QD=12.45;ReadPosRankSum=1.722;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:493,743:0.60:1236
chr7	142481376	rs73740310	T	A	10025.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr7	142481807	rs4726591	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:237,107:0.31:344
chr7	142481867	rs59320698	C	G	12601.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	142482066	rs2017144	C	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:46,78:0.63:124
chr7	142482184	rs73740312	A	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	142494606	rs2071361	C	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	142495126	rs12532977	GG	AT	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.098;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.064;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.799;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:130,52:0.29:182
chr7	142495308	rs56352733	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr7	142498652	rs377324607	CAT	C	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=4.552;QD=3.51;ReadPosRankSum=-4.374;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr7	142498673	rs376425724	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=13.611;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=5.171;QD=1.16;ReadPosRankSum=-5.142;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:194,37:0.16:231
chr7	142498687	rs1799887	T	C	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:94,201:0.68:295
chr7	142498699	.	A	G	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=4.535;QD=6.17;ReadPosRankSum=0.455;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:276,68:0.20:344
chr7	142498702	.	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.361;QD=6.52;ReadPosRankSum=0.092;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:276,73:0.21:349
chr7	142498705	.	ATT	A	2417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.123;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.403;QD=6.59;ReadPosRankSum=0.308;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:291,76:0.21:367
chr7	142498708	.	A	ACC	2417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.533;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.374;QD=6.57;ReadPosRankSum=0.435;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:291,77:0.21:368
chr7	142498735	rs377360215	A	C	4267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.211;QD=7.18;ReadPosRankSum=-0.350;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:399,195:0.33:594
chr7	142498738	rs370415932	C	G	7397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.065;QD=12.07;ReadPosRankSum=-0.821;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:399,214:0.35:613
chr7	142498833	.	A	T	9762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=800;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.522;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:412,380:0.48:792
chr7	142498837	rs1042957	C	T	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.392;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:661,119:0.15:780
chr7	142498897	rs1042959	A	G	9307.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:513,470:0.48:983
chr7	142499071	rs1042960	T	C	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:239,220:0.48:459
chr7	142499729	rs3114480	T	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr7	142499762	rs706	A	G	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.759;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-1.155;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:35,83:0.70:118
chr7	142510227	rs144460664	G	C	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=-1.258;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:19,65:0.77:84
chr7	142510309	rs17269	A	G	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:67,158:0.70:225
chr7	142562051	rs143667567	C	CCCT	6482.73	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:205,312:0.60:517
chr7	142564157	rs8177150	C	T	7444.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:197,343:0.64:540
chr7	142564854	rs6971720	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr7	142566163	rs6944571	C	G	10733.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:208,484:0.70:692
chr7	142566371	rs6464535	C	T	4608.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:116,200:0.63:316
chr7	142566601	rs732518	G	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr7	142566684	.	C	CCT	1997.73	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr7	142567942	rs4987691	A	G	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:91,151:0.62:242
chr7	142569362	.	GC	G	1630.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr7	142569596	rs4987682	A	G	4673.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:97,216:0.69:313
chr7	142569971	rs4987680	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr7	142570142	rs4987679	T	C	8315.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:175,388:0.69:563
chr7	142571127	rs4987672	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	142571782	rs4987669	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr7	142572649	rs4987668	A	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr7	142572908	rs4987667	T	C	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:77,162:0.68:239
chr7	142573263	rs4987665	C	T	7493.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:154,344:0.69:498
chr7	142574913	rs4987657	A	G	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,113:0.66:171
chr7	142575067	rs4987656	C	T	9316.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:219,436:0.67:655
chr7	142575150	rs4987655	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr7	142575239	rs4987654	A	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr7	142575369	rs4987653	C	T	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:104,191:0.65:295
chr7	142583330	rs17881456	A	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	142610003	.	G	GATCT	102	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=102;QD=53.0;SC=TTCTATCTCTGATCTATCTAT;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=142610011;WS=142609993;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr7	142612795	rs4252483	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr7	142622714	rs4252435	G	A	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:94,159:0.63:253
chr7	142625070	rs4252419	A	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr7	142625249	rs4252418	T	C	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:154,246:0.61:400
chr7	142625417	rs4252416	A	C	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:39,91:0.70:130
chr7	142625882	rs4252412	G	A	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:119,194:0.62:313
chr7	142625933	rs4252411	G	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:86,118:0.58:204
chr7	142626549	rs4236480	C	T	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr7	142626656	rs4252407	C	T	9291.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:248,444:0.64:692
chr7	142626773	rs4236481	A	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,120:0.62:192
chr7	142627076	rs4252403	AG	A	8066.73	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:154,238:0.61:392
chr7	142627580	rs4252400	G	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr7	142636541	rs28578436	T	G	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:72,155:0.68:227
chr7	142636599	rs11979330	G	A	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:94,168:0.64:262
chr7	142636704	rs11977017	T	C	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:102,166:0.62:268
chr7	142639846	rs8176040	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr7	142640004	rs8176039	T	C	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:73,155:0.68:228
chr7	142641382	rs8176031	A	G	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:64,118:0.65:182
chr7	142643473	rs8176019	C	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=0.109;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr7	142657915	rs8175962	T	C	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr7	142724062	rs9885986	C	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr7	142749417	rs17164102	C	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr7	142749737	rs17164103	C	T	5677.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:163,264:0.62:427
chr7	142749953	rs11975892	C	T	7238.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:225,347:0.61:572
chr7	142750147	rs10245778	C	T	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:91,205:0.69:296
chr7	142832255	rs10234174	C	T	4519.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:130,216:0.62:346
chr7	142836440	rs6959713	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	142919731	rs10260248	C	A	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:89,189:0.68:278
chr7	143016928	rs6962852	C	T	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:60,86:0.59:146
chr7	143017807	rs10282312	G	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	143017960	rs7800971	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	143020625	rs2272257	T	C	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:134,235:0.64:369
chr7	143020649	rs2272256	G	A	7432.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:208,340:0.62:548
chr7	143020780	rs2272255	T	C	23161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=1704;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.211;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:573,1079:0.65:1652
chr7	143020944	rs41276051	G	A	11268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=3.326;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:214,496:0.70:710
chr7	143028536	rs2242493	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr7	143029371	rs2367941	G	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	143029983	rs7794560	T	C	3150.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:342,186:0.35:528
chr7	143036318	rs2272253	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,94:0.63:149
chr7	143036337	rs2272252	C	T	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:71,122:0.63:193
chr7	143036548	rs6464542	T	A	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr7	143039311	rs940864	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:43,92:0.68:135
chr7	143042837	rs2272251	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:86,44:0.34:130
chr7	143043607	rs2242492	G	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chr7	143047375	rs41277416	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr7	143054585	rs6958357	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	143078529	.	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.337;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr7	143078928	rs10808025	C	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	143079806	rs6464546	G	A	6357.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	143085229	.	C	G	315.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=-1.415;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr7	143088526	rs1131885	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,122:0.52:234
chr7	143088823	rs1804527	T	C	13694.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr7	143088867	rs6967117	T	C	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr7	143093538	rs10952549	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr7	143094342	.	G	A	11898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=23.89;ReadPosRankSum=-0.380;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:168,330:0.66:498
chr7	143094342	.	GCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=24;MQ=59.89;NF=68;NR=50;PP=2944;QD=20;SC=ACACACACACGCACACACAGG;SbPval=0.69;Source=Platypus;TC=234;TCF=127;TCR=107;TR=118;WE=143094352;WS=143094317;set=Platypus	GT:AD:AF:DP	1/0:116,118:0.50:234
chr7	143094344	.	A	G	5688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DP=503;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.203;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:194,285:0.59:479
chr7	143094635	rs45497499	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.649;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:131,57:0.30:188
chr7	143095209	rs137978627	G	T	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr7	143095256	rs35251323	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr7	143097100	rs4725617	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:144,83:0.37:227
chr7	143105830	rs12703524	C	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr7	143141475	rs4595035	T	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	143747870	rs2961144	A	G	6973.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:139,322:0.70:461
chr7	143748098	rs6464573	G	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr7	143748257	rs6464574	G	A	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:48,123:0.72:171
chr7	143748364	rs4407791	T	C	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:91,219:0.71:310
chr7	143771536	rs6951485	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:79,110:0.58:189
chr7	143771937	rs2961135	G	C	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr7	143772321	rs58564374	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr7	143807454	rs114208499	T	A	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:60,171:0.74:231
chr7	143807515	rs2961149	T	G	11746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.413;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-4.658;QD=28.10;ReadPosRankSum=0.388;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:130,288:0.69:418
chr7	143807518	rs2951315	T	C	11807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-4.699;QD=27.33;ReadPosRankSum=0.302;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:136,296:0.69:432
chr7	143807674	rs2961150	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,72:0.77:94
chr7	143826603	rs2961160	G	T	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:117,230:0.66:347
chr7	143826697	rs2961161	C	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:70,150:0.68:220
chr7	143826729	rs66549240	ACTT	A	3665.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr7	143827198	rs34308692	CT	C	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr7	143839408	rs1919954	C	T	7079.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:169,334:0.66:503
chr7	143839605	rs1919953	T	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:51,83:0.62:134
chr7	143956742	rs77952084	C	G	4967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=0.228;QD=8.93;ReadPosRankSum=-0.859;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:303,253:0.46:556
chr7	144015434	rs141871720	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.36;QD=47.81;SOR=1.745;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	144015437	rs150229766	C	T	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.52;QD=42.43;SOR=1.639;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	144068163	rs146660641	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-3.448;QD=9.72;ReadPosRankSum=-0.209;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr7	144075749	rs1635079	A	G	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:78,173:0.69:251
chr7	144095600	rs2699503	A	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr7	144095730	rs11979528	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr7	144096456	rs11769787	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:50,86:0.63:136
chr7	144096598	rs11769847	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr7	144096839	rs757388	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr7	144098896	rs727712	T	C	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.452;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:45,108:0.71:153
chr7	144098992	rs727714	G	A	2704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.535;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:59,126:0.68:185
chr7	144100874	rs375024030	ACGGGC	A	3396.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:32,85:0.73:117
chr7	144227888	rs17169931	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr7	144227919	rs17169932	C	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr7	144228295	rs34346934	G	GA	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.150;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr7	144228318	rs62483152	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,56:0.62:91
chr7	144320214	rs17170295	G	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	144343330	rs73161036	C	T	125.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-0.393;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	144364829	rs57405539	C	T	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr7	144364877	rs146277351	C	CT	3072.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr7	144364918	rs67644764	G	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:78,122:0.61:200
chr7	144378851	rs41414146	T	C	6248.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:163,303:0.65:466
chr7	144379925	rs28380423	C	T	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:35,79:0.69:114
chr7	144462951	rs3779087	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	144532718	rs200964758	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.155;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.036;QD=0.43;ReadPosRankSum=-1.484;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr7	144703163	rs35986454	T	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	144708145	rs79359669	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr7	144708192	rs75385443	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr7	145692071	rs138991578	C	CCCT	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.629;QD=24.29;ReadPosRankSum=0.318;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr7	145692200	rs73464839	C	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.512;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	145692271	rs73464841	C	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.790;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	146471322	rs112724037	G	A	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:70,158:0.69:228
chr7	146471538	rs113167298	C	CAT	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr7	146805228	rs35167289	T	TG	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	146997203	rs2692185	T	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	147074998	rs6945709	G	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.503;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr7	147092861	rs34592169	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.310;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:173,50:0.22:223
chr7	147335933	rs72463606	CT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.232;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr7	147600604	rs2538962	C	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr7	147600642	rs75858942	T	C	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr7	147674912	rs2373284	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr7	147674978	rs10240503	A	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr7	147844468	rs114551495	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr7	147926734	rs3779031	A	G	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:193,97:0.33:290
chr7	147926888	rs3779032	A	C	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	147963925	rs3801974	C	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	147963983	rs10248273	G	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	147964016	rs3801975	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	147964091	rs3801976	G	A	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	148080647	rs1637841	T	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	148106465	.	C	CTCTT	2974	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=27;MQ=60.0;NF=21;NR=20;PP=2974;QD=20;SC=TGACACTTGACTCTTTCTTTC;SbPval=0.46;Source=Platypus;TC=80;TCF=39;TCR=41;TR=41;WE=148106498;WS=148106455;set=Platypus	GT:AD:AF:DP	0/1:39,41:0.51:80
chr7	148106475	rs72268642	C	CTT	6094.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.61;ReadPosRankSum=0.117;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:73,140:0.66:213
chr7	148106477	.	C	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=27;MQ=60.0;NF=55;NR=31;PP=2962;QD=20;SC=CTTTCTTTCTCTACAGCCAGT;SbPval=0.53;Source=Platypus;TC=127;TCF=81;TCR=46;TR=86;WE=148106498;WS=148106455;set=Platypus	GT:AD:AF:DP	0/1:41,86:0.68:127
chr7	148106477	.	C	CTG	6289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.71;ReadPosRankSum=-0.098;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:75,152:0.67:227
chr7	148106490	rs9648691	G	A	7052.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:100,194:0.66:294
chr7	148106654	rs13241417	T	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr7	148131742	rs2108673	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,85:0.59:144
chr7	148142858	rs145218794	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	148143136	rs2530301	A	G	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr7	148311115	rs11434056	G	GT	2356.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	148311214	rs6965813	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr7	148312382	rs6962115	T	G	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	148312520	rs6962292	T	C	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	148463860	rs1014095	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	148464675	rs6956231	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	148480990	rs10271133	C	T	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:97,136:0.58:233
chr7	148483760	rs2072406	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	148487329	rs933436	G	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	148487395	rs2007404	T	C	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	148504716	rs3217095	AG	A	2686.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	148504854	rs55877618	A	AGACTT	3654.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	148506064	rs740949	A	G	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr7	148508833	rs2072407	A	G	5402.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	148543525	rs10274535	A	G	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	148543693	rs3214332	TA	T	2837.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:6,147:0.96:153
chr7	148638572	rs2035216	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr7	148638581	.	G	A	781.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr7	148700083	rs11414114	T	TC	2892.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr7	148700849	rs9065	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr7	148702157	rs28532077	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr7	148702486	rs7795577	A	G	7428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-0.559;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:100,201:0.67:301
chr7	148702496	rs7777113	C	T	6727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.69;ReadPosRankSum=-0.906;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:81,162:0.67:243
chr7	148702958	rs150408680	AC	A	2439.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr7	148703243	rs11315544	AG	A	1463.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr7	148705221	rs2306172	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	148705490	rs10272564	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr7	148716320	rs56932055	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=1.082;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:25,43:0.63:68
chr7	148718305	rs144322958	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr7	148801337	rs12704061	T	C	5622.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:124,267:0.68:391
chr7	148809451	rs6464938	T	C	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	148809520	rs10228956	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr7	148815168	rs74531338	C	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr7	148823366	rs10251621	A	G	6630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.792;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:197,312:0.61:509
chr7	148844884	rs2693317	G	A	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:199,113:0.36:312
chr7	148875632	rs1202461	T	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	148903773	rs6464945	C	T	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.229;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:64,93:0.59:157
chr7	148904293	rs147860582	C	CAAGGTTCTTCATAAG	1139.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	148904343	rs6464946	A	T	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.755;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:49,107:0.69:156
chr7	148907870	rs1202422	C	T	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.679;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:230,77:0.25:307
chr7	148909687	rs1202425	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	148920894	rs115346898	A	G	6525.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:166,308:0.65:474
chr7	148921823	.	A	G	601.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr7	148936762	rs111428978	A	ACGG	6054.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:5,241:0.98:246
chr7	148937136	rs1202427	C	A	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	148959342	rs146403493	CG	C	1123.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr7	148963652	rs61729506	C	T	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:283,139:0.33:422
chr7	148982707	rs116248294	G	A	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:24,70:0.74:94
chr7	148990399	rs17554670	C	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr7	148991712	rs13236978	A	G	9506.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr7	149130080	rs57185523	C	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.535;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:118,46:0.28:164
chr7	149148319	rs4727071	T	C	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	149152770	rs3735319	A	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.965;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:113,37:0.25:150
chr7	149152906	rs3735318	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	149153084	rs376056761	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr7	149171898	rs9770094	T	G	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:77,124:0.62:201
chr7	149174265	rs4725816	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	149174717	rs61748863	T	G	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:77,109:0.59:186
chr7	149191351	rs61749486	T	C	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:90,147:0.62:237
chr7	149256086	rs1978186	C	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	149317216	rs354056	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	149318409	rs62490571	T	C	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr7	149318549	rs61996268	G	A	3593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-0.661;QD=12.74;ReadPosRankSum=1.408;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:109,173:0.61:282
chr7	149416771	rs10258658	C	T	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	149416873	rs56226490	C	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.342;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:176,82:0.32:258
chr7	149417052	rs56265968	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	149417230	rs10231875	G	A	11127.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.77;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	149417233	rs10277494	A	G	4216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.547;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:104,202:0.66:306
chr7	149418127	rs66544404	G	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr7	149418856	rs68139633	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr7	149419635	rs75701347	T	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr7	149419721	rs10240931	G	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	149420820	rs11462346	C	CT	4335.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	149421773	rs7791608	A	G	13011.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr7	149425872	rs17171280	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr7	149426305	rs11424737	G	GC	5723.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	149427409	rs709065	T	G	12803.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	149427728	rs6966081	T	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr7	149428602	rs55727837	G	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	149430367	rs73725583	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:256,124:0.33:380
chr7	149462055	rs863021	G	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,80:0.61:132
chr7	149462337	rs855667	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr7	149462523	rs855668	C	G	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:69,132:0.66:201
chr7	149473391	rs200575788	CAGAG	C	2801.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,72:0.58:124
chr7	149474393	rs709061	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr7	149476666	rs57553723	G	GC	7577.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	149477544	rs855677	G	A	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:89,185:0.68:274
chr7	149478171	rs855678	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.13;ReadPosRankSum=0.967;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	149479335	rs855680	G	C	6896.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:127,315:0.71:442
chr7	149479833	rs855681	C	A	4710.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:130,223:0.63:353
chr7	149480091	rs144883973	A	AC	7343.73	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:169,333:0.66:502
chr7	149483018	rs855683	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	149483053	rs855684	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr7	149483098	rs855685	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr7	149483373	rs855686	A	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr7	149484737	rs855687	G	A	4124.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:100,191:0.66:291
chr7	149484891	rs855688	A	G	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:86,153:0.64:239
chr7	149484906	rs855689	G	T	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:89,130:0.59:219
chr7	149485059	rs709060	T	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr7	149485987	rs893597	T	A	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:131,206:0.61:337
chr7	149486050	rs893596	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:104,141:0.58:245
chr7	149486246	rs855690	A	G	4183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.479;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:105,202:0.66:307
chr7	149486294	rs855691	A	G	2912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-2.127;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:101,142:0.58:243
chr7	149486367	rs855692	C	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:93,126:0.58:219
chr7	149486420	rs855693	C	G	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr7	149486574	rs855694	G	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	149486726	rs855695	T	C	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:64,154:0.71:218
chr7	149487304	rs2527320	A	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.973;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr7	149487318	.	GC	TG	682.77	.	AC=1;AF=0.500;AN=2;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	149487608	rs1635798	T	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr7	149487629	rs199597639	C	CCATGCG	703.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr7	149488290	rs1620442	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr7	149488529	rs893599	C	T	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:62,111:0.64:173
chr7	149488686	rs113792223	T	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr7	149488909	rs893600	C	T	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:114,195:0.63:309
chr7	149488991	rs893601	T	C	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:121,178:0.60:299
chr7	149489037	rs1635802	T	C	9171.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:164,231:0.58:395
chr7	149489048	rs893602	C	T	9726.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:174,263:0.60:437
chr7	149489333	rs200642802	T	TG	2151.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr7	149489443	rs893603	C	A	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:104,190:0.65:294
chr7	149489585	rs1635804	C	T	9280.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:252,439:0.64:691
chr7	149489860	rs732402	G	A	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:65,110:0.63:175
chr7	149490310	rs893605	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-1.150;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	149490640	rs893606	C	G	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:84,143:0.63:227
chr7	149491821	rs1635806	T	C	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.147;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:48,107:0.69:155
chr7	149493496	rs1659455	T	A	6298.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:186,302:0.62:488
chr7	149498893	rs77858430	A	G	8572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=-0.009;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:150,217:0.59:367
chr7	149498903	rs2074689	T	C	8668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.886;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.56;ReadPosRankSum=-0.077;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:147,221:0.60:368
chr7	149499284	rs56163742	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr7	149500472	rs10952229	A	G	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	149500585	rs76069965	C	T	5835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.098;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:155,277:0.64:432
chr7	149500992	rs4725830	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr7	149506211	rs71194663	G	GC	8702.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=37.51;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	149511985	rs10952230	A	G	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	149513780	rs2074688	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr7	149520614	.	C	T	3412.77	.	AC=1;AF=0.500;AN=2;DP=270;set=Intersection	GT:AD:AF:DP	0/1:107,159:0.60:266
chr7	149543219	rs34196240	C	CT	1550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.007;QD=7.38;ReadPosRankSum=-1.083;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:91,119:0.57:210
chr7	149544681	rs10569456	GGTGTGTGTGT	G	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.14;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	149547463	rs75158357	C	A	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:91,141:0.61:232
chr7	149556518	rs4725833	C	T	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	149558409	rs2240361	G	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:154,77:0.33:231
chr7	149559273	rs2074700	C	T	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:260,134:0.34:394
chr7	149559465	rs2074701	C	T	4861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.026;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:567,278:0.33:845
chr7	149570974	rs148579932	T	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr7	149571095	rs79377053	G	A	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:104,191:0.65:295
chr7	149572842	rs10240203	G	C	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:186,109:0.37:295
chr7	149573081	rs116837570	A	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:76,146:0.66:222
chr7	149575707	rs6946997	C	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	149575725	rs6947011	C	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	149575747	rs5888369	TG	T	4485.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.05;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	149575884	rs10246226	T	C	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	149575929	.	T	TGTGGTTAGAGTTCTTGTTGGGATTCAGGCATCTATTTATTTCATGAAAAGAAAAGGTGGGGAGGGGAC	3075.73	.	AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=2.932;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	149576818	rs7785847	A	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	149588429	rs4725317	G	A	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.31;QD=25.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	149589343	rs2626759	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.87;QD=27.40;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	149589496	rs11428600	A	AC	3636.74	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:16,163:0.91:179
chr7	149589599	rs4725318	C	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	149744835	rs141816877	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	149946192	rs188374969	A	G	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr7	149981830	rs4725334	T	G	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	149986773	rs2286443	T	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:60,19:0.24:79
chr7	149990318	.	GT	G	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.19;MQRankSum=-5.211;QD=4.33;ReadPosRankSum=-0.651;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr7	149990535	rs200595381	G	A	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-3.694;QD=6.28;ReadPosRankSum=0.975;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:84,44:0.34:128
chr7	149992184	rs2261646	C	G	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr7	150035526	rs4721	T	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:138,72:0.34:210
chr7	150036288	rs80070869	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr7	150067679	rs3757424	C	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr7	150067714	rs3757423	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.940;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr7	150068371	rs3735165	T	C	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:254,127:0.33:381
chr7	150068933	rs6722	T	C	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=5.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.106;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:169,65:0.28:234
chr7	150068981	rs149624173	G	A	5199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.996;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:84,233:0.74:317
chr7	150069395	rs3832490	GCCGCCAGGGGCC	G	5844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.201;QD=10.03;ReadPosRankSum=-0.338;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:411,172:0.30:583
chr7	150093701	rs940453	A	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	150094851	rs13225910	A	G	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr7	150094853	rs7780011	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,60:0.42:142
chr7	150095271	rs7393	T	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr7	150174274	rs150230235	C	G	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:120,245:0.67:365
chr7	150217089	rs7800829	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr7	150217248	rs3735081	A	G	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	150217335	rs3735079	G	T	2228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=5.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.068;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:242,125:0.34:367
chr7	150218002	rs10578	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr7	150269087	rs13242186	G	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	150269160	rs7806724	G	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr7	150269542	rs2293172	G	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:150,81:0.35:231
chr7	150324825	rs3735084	C	T	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:100,123:0.55:223
chr7	150327234	.	CAAAAA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.555;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	150384048	.	A	AAAAG	543.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.21;ReadPosRankSum=0.489;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr7	150384193	.	CGTGTGTGTGTGTGT	C	882.73	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr7	150386597	rs74713763	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr7	150389677	rs6952002	G	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr7	150416050	rs72264755	GGTGGTTATGCCTATTT	G	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	150488616	rs2302479	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	150490376	rs2072443	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr7	150490431	rs2072442	C	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.895;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr7	150490797	rs72471023	GGACA	G	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr7	150491084	rs3173833	T	G	5565.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:517,320:0.38:837
chr7	150491156	rs28434777	T	C	15022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=1111;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.080;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:398,704:0.64:1102
chr7	150491829	rs114909573	A	G	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:86,165:0.66:251
chr7	150491851	rs61057705	T	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:218,123:0.36:341
chr7	150491995	rs145375921	CCACACACA	C	1082.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr7	150498809	rs1127958	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.193;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr7	150498836	rs2075079	C	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	150499164	.	T	TTTCTC	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-0.000;QD=18.07;ReadPosRankSum=-1.834;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	150499267	rs12668797	C	A	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	150500356	rs741068	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	150500455	rs741067	A	G	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	150500520	rs741066	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.758;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:87,31:0.26:118
chr7	150500729	rs741064	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	150501516	rs9088	A	G	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	150502016	rs1044608	C	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	150553605	rs10156191	C	T	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	150554887	rs2071514	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:100,154:0.61:254
chr7	150555810	rs45455308	G	A	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:137,99:0.42:236
chr7	150555915	rs10893	A	G	5445.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:182,269:0.60:451
chr7	150556002	rs1049748	T	C	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr7	150556055	rs6943147	CG	GC	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	150556803	rs55671932	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.038;QD=6.74;ReadPosRankSum=2.112;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	150556992	rs10952294	C	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,71:0.74:96
chr7	150557390	rs45615934	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr7	150557471	rs2071515	G	C	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:53,125:0.70:178
chr7	150557622	rs12179	G	A	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:119,216:0.64:335
chr7	150557665	rs1049793	C	G	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:141,223:0.61:364
chr7	150557748	rs3735076	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:63,81:0.56:144
chr7	150558366	rs12539	C	T	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:212,117:0.36:329
chr7	150558399	rs2071517	G	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:47,117:0.71:164
chr7	150558444	rs34090933	G	GCA	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150644394	rs3815459	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr7	150645534	rs1805123	T	G	1987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.792;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:260,128:0.33:388
chr7	150645682	rs2968860	G	A	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	150647969	rs2072413	CC	TG	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	150648198	rs1137617	A	G	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	150648229	rs200905835	G	A	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:56,132:0.70:188
chr7	150648672	rs41314375	G	A	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:68,161:0.70:229
chr7	150648986	rs2072411	G	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:73,23:0.24:96
chr7	150652286	rs887586	C	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	150654622	rs11462566	A	AG	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	150655624	rs758891	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr7	150655643	rs758890	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr7	150656542	rs60930392	A	AC	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr7	150672162	rs11410979	T	TC	232.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	150693657	rs368647044	C	T	4488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.212;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:670,289:0.30:959
chr7	150695726	rs1549758	T	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:51,144:0.74:195
chr7	150696066	rs79468462	C	T	5229.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:168,248:0.60:416
chr7	150696111	rs1799983	T	G	7146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.966;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:255,376:0.60:631
chr7	150704246	rs7792133	G	A	20638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=-2.912;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:234,524:0.69:758
chr7	150704250	rs2566514	C	G	20376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.88;ReadPosRankSum=-2.484;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:231,500:0.68:731
chr7	150706383	rs753482	C	A	6022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.212;QD=11.76;ReadPosRankSum=0.188;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:216,296:0.58:512
chr7	150706436	rs142498418	G	GC	1949.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.651;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=17.758;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.842;QD=8.37;ReadPosRankSum=-1.223;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:146,87:0.37:233
chr7	150707488	rs743507	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr7	150708089	rs891512	A	G	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr7	150708850	rs2256314	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr7	150709571	rs7830	G	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:62,98:0.61:160
chr7	150713456	rs3918220	C	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr7	150713902	rs11393607	G	GC	2546.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr7	150714991	rs75805614	G	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=2.548;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:27,57:0.68:84
chr7	150715817	rs1835428	A	G	4289.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:123,188:0.60:311
chr7	150720902	rs13307588	A	G	26663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=1041;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.91;ReadPosRankSum=0.487;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,1028:1.00:1029
chr7	150725722	rs2303922	A	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=2.143;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr7	150731338	rs2303923	G	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr7	150732630	rs41282730	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr7	150732649	rs76884999	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	150732812	rs17545756	C	T	5105.77	.	AC=1;AF=0.500;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	0/1:592,288:0.33:880
chr7	150733115	rs76225344	G	A	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:360,179:0.33:539
chr7	150733271	rs76802349	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr7	150734196	rs77329175	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	150734364	rs78023969	G	T	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.603;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:151,76:0.33:227
chr7	150737812	rs193181069	C	A	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr7	150742408	rs59397762	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:95,37:0.28:132
chr7	150747650	rs62001897	G	T	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:326,151:0.32:477
chr7	150747746	rs2288645	A	G	3627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-2.211;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:687,250:0.27:937
chr7	150752066	rs891507	T	C	4530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.609;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:582,282:0.33:864
chr7	150752608	rs2069456	T	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr7	150759219	rs3217354	CGTGTGTGAGT	C	808.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr7	150760076	rs34403003	G	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	150761150	rs6464122	C	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150761314	rs2303929	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.234;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:95,29:0.23:124
chr7	150761880	rs2303931	C	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:186,93:0.33:279
chr7	150763655	rs2229549	T	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr7	150765065	rs2229550	T	C	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	150768786	rs2303937	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:218,109:0.33:327
chr7	150772257	rs34749505	G	A	8066.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:174,370:0.68:544
chr7	150773036	rs34863137	G	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr7	150773072	rs2303939	G	C	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	150773807	rs7262	A	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	150775306	rs2303942	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	150775828	rs141897233	C	T	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-2.146;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:426,163:0.28:589
chr7	150779069	rs116020092	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr7	150783756	.	TGCCGCC	T,TGCC	1513.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.51;QD=38.81;SOR=0.743;set=HC	GT:AD:AF:DP	1/2:0,22,17:0.56,0.44:39
chr7	150783900	.	C	CG	996.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.58;QD=45.31;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	150783903	.	T	G	1050.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;QD=45.69;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	150783906	.	C	G	1096.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.54;QD=43.87;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	150783908	.	C	CG	1222.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.48;QD=48.91;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	150783911	.	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;QD=47.13;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	150783917	.	T	G	1636.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=49.60;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	150783919	.	GTCT	G	1658.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.99;QD=46.08;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	150783922	.	T	TGGGG	1568.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=46.14;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	150784407	rs13239507	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr7	150814328	rs114943234	A	C	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,84:0.68:123
chr7	150819673	rs375457798	TCTC	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.082;QD=0.41;ReadPosRankSum=-0.700;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:93,10:0.10:103
chr7	150825567	rs2288650	C	T	2519.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.992;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=-0.630;SOR=1.616;set=HC	GT:AD:AF:DP	1/1:1,100:0.99:101
chr7	150825839	rs7808252	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	150864240	rs13241978	G	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr7	150873608	rs310598	A	G	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr7	150878260	rs2253592	C	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	150884266	rs372716545	CAG	C	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=3.070;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.537;QD=1.70;ReadPosRankSum=-0.309;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:268,49:0.15:317
chr7	150915102	rs79537035	C	T	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:345,156:0.31:501
chr7	150916114	rs35656219	CAGG	C	4913.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	150916228	rs6949587	G	A	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	150918914	rs4726007	G	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	150921296	.	A	AT	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.788;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:217,56:0.21:273
chr7	150921950	rs6464133	A	G	7380.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	150931268	rs2608293	C	G	14585.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr7	150934162	rs2446065	G	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	150934975	rs2487154	C	G	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:234,180:0.43:414
chr7	150937377	rs61667463	C	CG	1935.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	150937729	rs188632480	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr7	150939193	rs4725398	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr7	150939359	rs219227	C	T	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	150939396	rs219228	C	A	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	150939557	rs116608068	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr7	150940657	rs122815	T	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	150942834	rs35746260	C	T	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	150972189	rs2072298	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr7	151038958	rs2142172	T	C	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr7	151048484	rs449081	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.200;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr7	151049002	rs3838706	A	AACACACAC,ATCACACAC	785.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:1.00:19
chr7	151049025	rs379931	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	151049231	rs366355	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,60:0.35:171
chr7	151049337	rs394259	A	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	151049818	rs444648	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr7	151053043	rs446886	A	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.687;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:62,26:0.30:88
chr7	151057396	rs3217033	AC	A	1973.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:140,78:0.36:218
chr7	151064064	rs386956	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.359;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr7	151064305	rs367191	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	151064872	rs874607	A	G	181.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.53;ReadPosRankSum=2.362;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	151066078	rs138050080	GA	G	725.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr7	151074015	rs2240629	G	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr7	151074296	rs2159158	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr7	151078735	rs4141455	A	G	481.81	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr7	151078845	rs4141454	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	151082115	rs75757618	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr7	151082146	rs116467118	A	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr7	151097323	rs11767693	A	G	4979.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:101,140:0.58:241
chr7	151097345	rs77550133	G	A	4298.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:77,109:0.59:186
chr7	151106066	rs12533730	C	T	3097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=0.854;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:79,150:0.66:229
chr7	151108411	rs917613	T	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr7	151133381	rs77705643	C	T	4594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.287;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:134,226:0.63:360
chr7	151133406	rs79151569	T	C	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=2.678;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:96,175:0.65:271
chr7	151133477	rs76423834	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:34,70:0.67:104
chr7	151134988	rs11976153	A	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:91,155:0.63:246
chr7	151164348	rs17635434	G	A	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.064;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:165,80:0.33:245
chr7	151168415	rs35526149	CAAT	C	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	151168534	rs6956899	G	A	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.479;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:57,40:0.41:97
chr7	151195328	rs11772458	G	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr7	151216353	rs6948477	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.965;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr7	151254175	rs8961	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:172,81:0.32:253
chr7	151254445	rs764801	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.21;ReadPosRankSum=0.862;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	151254462	rs764800	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	151292395	rs35348247	A	AT	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr7	151432869	rs1547470	T	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	151483445	rs12671980	A	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.50;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	151483445	.	ACA	GCA,GCG	855	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=37;MMLQ=24;MQ=60.0;NF=48,34;NR=33,25;PP=208,855;QD=2.99717546355;SC=GTGCAAGCGGACATGCGGGTG;SbPval=0.52;Source=Platypus;TC=81;TCF=48;TCR=33;TR=81,59;WE=151483455;WS=151483435;set=Platypus	GT:AF:DP	0/1:1.00:81
chr7	151483447	rs77505659	A	G	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.533;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:40,91:0.69:131
chr7	151504100	rs62478243	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.981;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:137,61:0.31:198
chr7	151504137	rs78150542	C	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.161;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:119,48:0.29:167
chr7	151504498	rs12703159	CG	TA	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.430;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-1.255;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:120,41:0.25:161
chr7	151504695	rs75074902	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:140,70:0.33:210
chr7	151506155	rs6464173	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	151573795	rs76351165	C	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:180,83:0.32:263
chr7	151668224	rs58859718	A	AT	148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.79;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr7	151668225	.	A	T	46	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=2;HapScore=2;MGOF=56;MMLQ=27;MQ=56.12;NF=0;NR=3;PP=46;QD=26.9237375157;SC=GATAGATAGAAAGAAAACAGT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=151668233;WS=151668215;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	151668225	.	A	AGATAGATAGAT	148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.79;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr7	151680072	rs6960270	T	C	9139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.678;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.867;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:2,354:0.99:356
chr7	151684168	rs4726127	C	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	151723022	rs72200904	TGCG	T	727.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr7	151818777	rs967093	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	151873853	rs6464211	C	T	3470.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:120,164:0.58:284
chr7	151944923	rs376566792	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.72;MQRankSum=0.596;QD=3.35;ReadPosRankSum=-0.204;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr7	151945007	rs137949498	C	T	8330.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:305,402:0.57:707
chr7	151945071	rs150073007	G	GT	3839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=0.987;QD=3.49;ReadPosRankSum=1.412;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:900,199:0.18:1099
chr7	151945140	rs57648310	C	T	5590.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:535,310:0.37:845
chr7	151945167	rs2537264	G	T	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:444,199:0.31:643
chr7	151945204	rs4024453	G	A	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.590;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=171.177;MLEAC=1;MLEAF=0.500;MQ=51.94;MQRankSum=-14.458;QD=4.26;ReadPosRankSum=0.336;SOR=7.169;set=HC	GT:AD:AF:DP	0/1:292,86:0.23:378
chr7	151970856	rs10454320	T	A	25008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=1551;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-11.392;QD=16.17;ReadPosRankSum=1.983;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:441,1106:0.71:1547
chr7	151970931	rs56850341	G	A	3897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=17.133;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=63.252;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-18.795;QD=8.04;ReadPosRankSum=-4.158;SOR=3.826;set=HC	GT:AD:AF:DP	0/1:324,161:0.33:485
chr7	152055766	.	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.705;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr7	152132812	rs191834730	C	T	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.039;QD=13.08;ReadPosRankSum=-0.273;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:46,84:0.65:130
chr7	152143638	rs113101556	G	A	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:164,281:0.63:445
chr7	152143744	rs6953943	A	G	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:109,201:0.65:310
chr7	152345726	rs3218539	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.235;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr7	152346007	rs3218536	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:219,111:0.34:330
chr7	152511598	rs112910296	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr7	152513995	rs188772146	G	A	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=-2.670;QD=15.35;ReadPosRankSum=-0.286;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:28,74:0.73:102
chr7	152517552	rs114295156	G	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=51.97;MQRankSum=-1.885;QD=2.93;ReadPosRankSum=0.382;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr7	152517560	rs201127372	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=-1.233;QD=3.33;ReadPosRankSum=1.099;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:114,19:0.14:133
chr7	152520490	rs140327402	C	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-7.482;QD=1.47;ReadPosRankSum=0.987;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:300,68:0.18:368
chr7	152549034	.	T	TA	57	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=11;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=5;NR=0;PP=57;QD=13.8;SC=GTTGTCTCCATAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=12;TCF=11;TCR=1;TR=5;WE=152549042;WS=152549032;set=Platypus	GT:AD:AF:DP	1/0:7,5:0.42:12
chr7	152550499	rs4726215	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr7	153417428	rs147616164	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	153750234	rs145699571	T	G	125.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-0.319;QD=15.69;ReadPosRankSum=-0.157;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr7	153750319	.	G	GC	38.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.00;QD=19.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	154172154	rs3750042	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:123,73:0.37:196
chr7	154379234	rs11243354	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr7	154429560	rs11243339	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.748;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr7	154429657	rs6972501	T	C	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-1.381;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:75,44:0.37:119
chr7	154461112	rs3807218	A	G	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:160,82:0.34:242
chr7	154461248	rs35719981	TTGTG	T,TTG	1428.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.75;SOR=1.721;set=HC	GT:AD:AF:DP	1/2:0,22,23:0.49,0.51:45
chr7	154564677	rs11291131	CA	C	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=8.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.569;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr7	154587367	rs10274635	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	154587502	rs200163118	AAAAAGAAAAG	A	84.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.443;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.030;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:95,24:0.20:119
chr7	154587503	rs201537690	AAAAGAAAAG	A	1050.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=7.286;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.670;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:46,75:0.62:121
chr7	154592965	rs12531589	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	154598908	rs2293357	A	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	154659566	rs56243497	TT	GG	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	154659889	rs60134921	C	G	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr7	154659900	rs55716573	A	G	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr7	154667628	rs2293353	A	G	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr7	154667842	rs10257999	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr7	154672551	rs4960632	G	C	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:70,113:0.62:183
chr7	154672646	rs3817522	T	C	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:83,158:0.66:241
chr7	154672679	rs3817520	A	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:69,118:0.63:187
chr7	154672717	rs3817519	G	A	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr7	154672809	rs3817518	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr7	154672839	rs3817517	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr7	154679447	rs940378	G	A	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr7	154679610	rs2316537	GA	CC	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr7	154681142	rs11335725	CT	C	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.975;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:93,62:0.40:155
chr7	154681216	rs1129301	G	A	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:75,123:0.62:198
chr7	154681363	rs13232266	A	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr7	154681383	rs2280656	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	154684153	rs3734960	T	C	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:101,169:0.63:270
chr7	154684363	rs76896340	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr7	154739679	rs61752003	T	C	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:90,243:0.73:333
chr7	154748908	rs3817480	G	A	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.231;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:41,75:0.65:116
chr7	154751774	rs2272174	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr7	154759671	rs893942	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr7	154760369	rs935037	A	G	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr7	154785362	rs306281	A	G	5636.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:144,275:0.66:419
chr7	154794482	rs371145514	GCGGGGA	G	1476.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr7	154861048	rs7787446	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-1.242;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr7	154862188	rs3823534	A	G	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:55,104:0.65:159
chr7	154862591	rs1800883	G	C	16152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=1161;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-3.104;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:395,758:0.66:1153
chr7	154862621	rs6320	T	A	7503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=1353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.480;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:899,444:0.33:1343
chr7	154876342	rs980442	T	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr7	154989924	rs7792437	G	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:355,174:0.33:529
chr7	155094553	rs61740679	T	C	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-1.666;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:46,88:0.66:134
chr7	155094592	rs9768652	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	155095436	.	C	A	86	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=10;HapScore=2;MGOF=4;MMLQ=26;MQ=59.66;NF=5;NR=1;PP=86;QD=20.1285354245;SC=TTAAAAAAAACAACAAAAACC;SbPval=0.73;Source=Platypus;TC=30;TCF=24;TCR=6;TR=6;WE=155095444;WS=155095426;set=Platypus	GT:AD:AF:DP	1/0:24,6:0.20:30
chr7	155099855	rs9769506	C	A	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	155150390	rs55989814	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:74,135:0.65:209
chr7	155150472	rs3922604	G	A	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:83,159:0.66:242
chr7	155150560	rs6605563	A	G	6385.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:136,292:0.68:428
chr7	155150602	rs6605562	T	C	8286.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:165,374:0.69:539
chr7	155150675	rs79074317	G	A	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:498,249:0.33:747
chr7	155150765	rs7456618	C	T	9011.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:269,424:0.61:693
chr7	155175005	rs61239362	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr7	155187691	rs2885336	T	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	155187889	rs11763974	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	155255332	rs2361689	T	C	6910.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:194,324:0.63:518
chr7	155295804	rs35244674	GA	G	4309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.960;QD=10.80;ReadPosRankSum=1.002;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:92,307:0.77:399
chr7	155295854	rs7804744	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:131,68:0.34:199
chr7	155437475	rs7786826	T	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	155465422	rs7811556	C	G	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	155465438	rs10599668	CAAA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.53;ReadPosRankSum=1.068;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	155503920	rs7800753	A	T	11575.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr7	155504041	rs78574802	C	T	12660.77	.	AC=1;AF=0.500;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	0/1:316,595:0.65:911
chr7	155531080	rs3735576	A	G	8919.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:311,436:0.58:747
chr7	155559355	.	C	T	646.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:93,41:0.31:134
chr7	155596353	rs9333634	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:89,51:0.36:140
chr7	155598879	rs1233554	A	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	155747865	rs7798508	C	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	155747907	rs7810074	T	C	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	155749951	rs35655547	C	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	155750033	rs10256182	A	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	155755336	rs7807731	C	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr7	155755826	rs2007015	A	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.822;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:51,44:0.46:95
chr7	155757502	rs1551630	T	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	156433048	rs7787888	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:163,69:0.30:232
chr7	156433243	rs7788200	C	G	2579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=1.464;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:47,122:0.72:169
chr7	156433357	rs10676838	T	TGGGGC	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.157;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr7	156436769	rs7804211	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	156468377	rs2886380	G	C	8592.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	156468377	.	GC	CA,CT	713	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=7;HapScore=2;MGOF=13;MMLQ=22;MQ=59.87;NF=37,31;NR=21,13;PP=713,695;QD=13.2149633597;SC=ACCCGCCCCCGCCTCCTCCTC;SbPval=0.48;Source=Platypus;TC=107;TCF=70;TCR=37;TR=58,44;WE=156468386;WS=156468367;set=Platypus	GT:AF:DP	0/1:0.54:107
chr7	156468378	rs2886381	C	A,T	8003.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.63;SOR=1.139;set=HC	GT:AD:AF:DP	1/2:0,122,75:0.62,0.38:197
chr7	156468656	rs2365513	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	156468939	rs140092411	G	GTA,GTGTA	2117.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/2:0.29,0.63:79
chr7	156469096	rs2302149	C	T	8109.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:201,378:0.65:579
chr7	156469133	rs2302147	C	G	7531.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:187,356:0.66:543
chr7	156469179	rs2302146	C	T	6217.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:144,284:0.66:428
chr7	156469190	rs2302145	A	G	10935.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr7	156469401	rs7780080	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr7	156473779	rs71838136	T	TA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.510;QD=1.56;ReadPosRankSum=-0.060;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr7	156477064	rs10234525	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.648;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr7	156480633	rs3757433	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr7	156516951	rs7793618	G	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr7	156518007	rs2072468	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr7	156518192	rs60299355	G	A	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.835;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:114,56:0.33:170
chr7	156518195	rs59912051	G	A	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.954;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:117,56:0.32:173
chr7	156521493	rs6459703	A	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=2.677;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr7	156529062	rs10640672	C	CAGT	1187.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	156554830	rs6957768	T	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.172;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:126,46:0.27:172
chr7	156626404	rs10253387	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.224;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr7	156685519	rs200299453	G	GC	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	156685540	.	C	CG	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=4.176;QD=11.84;ReadPosRankSum=0.647;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr7	156685545	rs200101319	A	AC,C	2637.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.07;QD=41.21;SOR=0.966;set=HC	GT:AD:AF:DP	1/2:0,41,23:0.64,0.36:64
chr7	156685564	.	G	A	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=-4.369;QD=22.00;ReadPosRankSum=-1.812;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:31,69:0.69:100
chr7	156755350	rs12672076	T	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	156756646	rs10267297	A	G	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-3.227;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:157,62:0.28:219
chr7	156759597	rs34856615	ATATAT	A	4172.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	156761751	rs9969350	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	156761818	rs2302445	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr7	156761913	rs2302444	C	T	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=1.857;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:94,150:0.61:244
chr7	156762224	rs2302443	G	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	156762248	rs12919	G	A	3676.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.255;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-0.746;SOR=0.424;set=HC	GT:AD:AF:DP	1/1:1,145:0.99:146
chr7	156762446	rs3087905	G	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	156799081	rs2270210	T	C	520.53	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr7	156931907	rs182166882	G	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	156932105	rs59178327	C	T	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	156962874	rs6956046	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	156971581	rs870745	T	C	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	157000176	rs2301914	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	157049530	rs1182373	T	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	157151482	.	C	CAAG	52	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=52;QD=39.0;SC=GAGCAGTTAACGAGCATTTGC;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=157151490;WS=157151472;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr7	157156043	rs10264371	T	C	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:101,203:0.67:304
chr7	157159423	rs3779591	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.009;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	157162068	rs9692250	T	C	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:45,125:0.74:170
chr7	157208617	rs1009135	C	T	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.463;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:104,43:0.29:147
chr7	157234112	rs11977865	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:83,101:0.55:184
chr7	157234787	rs12698061	G	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=37.26;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	157234816	rs12698062	A	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=38.92;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	157234912	rs12669046	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;MQ=58.64;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	157235034	rs56250133	T	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr7	157235229	rs6974109	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	157235364	rs6950818	C	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	157261953	rs11449038	C	CG	2548.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	157318407	.	TACTGTCGG	CACCGTCTG,CAGTGTCGC	613	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=24;MQ=52.75;NF=10,0;NR=2,2;PP=613,122;QD=56.3723229052;SC=GGGCCGTGTGTACTGTCGGAG;SbPval=0.88;Source=Platypus;TC=14;TCF=10;TCR=4;TR=12,2;WE=157318423;WS=157318397;set=Platypus	GT:AF:DP	0/1:0.86:14
chr7	157318438	.	G	C	582	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=48;MMLQ=25;MQ=57.09;NF=22;NR=7;PP=582;QD=21.2679728465;SC=GCCGTGTGCAGTGTCGCAGGG;SbPval=0.8;Source=Platypus;TC=32;TCF=22;TCR=10;TR=29;WE=157318446;WS=157318428;set=Platypus	GT:AD:AF:DP	1/1:3,29:0.91:32
chr7	157361564	rs7789467	C	T	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	157361734	rs221294	T	C	14321.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr7	157367205	rs146248159	T	TGA	1334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.902;QD=19.92;ReadPosRankSum=0.253;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr7	157370645	rs736940	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	157370688	rs122004	C	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	157388012	rs73163814	A	G	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr7	157388042	.	AGGAGATTAGGAAGCCT	A	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-1.858;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr7	157406819	rs10247739	A	C	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-1.092;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:125,72:0.37:197
chr7	157414064	rs1130502	G	A	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr7	157800838	rs143545915	AGT	A	1952.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr7	157800899	rs12666418	C	T	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:84,173:0.67:257
chr7	157873975	rs3800863	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=2.375;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr7	157874101	rs73748028	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.914;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr7	157903478	rs3800861	A	G	13488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.206;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=1.296;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:2,540:1.00:542
chr7	157903504	rs3800860	C	T	5435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.584;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:224,279:0.55:503
chr7	157903538	rs1130501	A	G	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:193,228:0.54:421
chr7	157926349	rs17847428	T	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr7	157929294	rs3800857	G	A	6821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=0.084;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:182,321:0.64:503
chr7	157929503	.	C	T	1641.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr7	157930979	rs3752367	C	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr7	157931119	rs1130500	A	G	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:229,117:0.34:346
chr7	157931144	rs1130499	C	T	4012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=0.190;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:223,112:0.33:335
chr7	157931151	rs150508509	C	G	3700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.305;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:224,104:0.32:328
chr7	157959620	rs10277232	C	T	1001.80	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:2,24:0.92:26
chr7	157959636	rs1130498	G	A	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr7	157959794	rs73745196	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr7	157959870	rs112343839	G	T	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:143,56:0.28:199
chr7	157959879	rs1130497	C	T	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:57,143:0.71:200
chr7	157959888	rs73745197	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:153,69:0.31:222
chr7	157959895	rs1130496	C	T	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:72,156:0.68:228
chr7	157959911	rs1130495	A	G	6106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=-2.118;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:73,163:0.69:236
chr7	158055802	.	ACAC	A	2577.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.526;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:150,78:0.34:228
chr7	158055806	.	TGCACACAC	T	2544.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-1.742;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:168,81:0.33:249
chr7	158055810	.	CACACAT	C	6495.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=26.30;ReadPosRankSum=1.977;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:81,166:0.67:247
chr7	158056059	rs199512202	CAT	C	776.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr7	158325310	rs55857496	C	CAA	5458.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	158325316	rs34189096	C	A	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	158325338	rs12670231	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.78;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	158325572	rs4909238	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	158384590	rs10277152	T	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	158415033	rs56821222	T	G	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	158424508	rs11973267	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	158434251	rs200241139	GA	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.289;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr7	158438186	rs2290393	G	A	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	158444975	rs1466210	T	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	158450965	rs12533939	A	T	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	158455089	rs4484634	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	158456710	rs10227735	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	158473339	rs2305470	G	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	158476148	rs6969248	G	A	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	158485700	.	C	CA	222.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	158526880	rs3750051	G	A	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:27,82:0.75:109
chr7	158527051	rs3750052	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:51,96:0.65:147
chr7	158527260	rs3763413	T	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	158528158	rs3816461	C	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:77,96:0.55:173
chr7	158528170	rs7787974	G	A	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.098;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:81,99:0.55:180
chr7	158528233	rs3816462	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr7	158528254	rs34974906	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr7	158528269	rs35914882	C	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr7	158528443	rs3816463	T	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	158529560	rs6961811	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	158529668	rs73526313	C	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:100,126:0.56:226
chr7	158529704	rs6960873	G	A	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:137,175:0.56:312
chr7	158529889	rs2305467	T	G	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr7	158531641	rs7803766	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	158531692	rs7804970	C	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,106:0.76:139
chr7	158531888	rs7780879	G	A	3706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.89;ReadPosRankSum=-0.030;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:31,93:0.75:124
chr7	158531893	rs7800556	A	G	3686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.51;ReadPosRankSum=-1.514;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:28,89:0.76:117
chr7	158532007	rs7804422	T	C	144.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr7	158534163	rs66689505	T	TG	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	158534372	rs57686648	G	A	14363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.74;ReadPosRankSum=2.869;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:129,354:0.73:483
chr7	158534381	rs59980573	G	C	14560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.597;QD=29.06;ReadPosRankSum=1.856;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:133,368:0.73:501
chr7	158534690	rs34849374	CTT	C	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	158534707	rs35420830	T	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.85;ReadPosRankSum=1.029;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	158536154	rs2305472	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr7	158536267	rs2305473	T	C	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:86,135:0.61:221
chr7	158536345	rs2305475	A	G	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:66,90:0.58:156
chr7	158536376	rs2305476	A	C	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=6.904;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.038;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr7	158536388	rs2305477	A	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.653;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.509;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.240;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:64,61:0.49:125
chr7	158536402	rs71547563	C	G	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-0.394;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr7	158536408	rs71547564	T	C	2350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-0.401;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:69,61:0.47:130
chr7	158536411	rs71547565	T	C	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-0.338;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:69,61:0.47:130
chr7	158536422	rs71547566	C	G	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=17.62;ReadPosRankSum=0.405;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:64,55:0.46:119
chr7	158536429	rs61362305	A	G	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=18.15;ReadPosRankSum=0.493;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:60,55:0.48:115
chr7	158536465	rs66795622	T	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr7	158552072	rs34089418	CAAG	C	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr7	158552331	rs896859	C	G	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-3.058;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:114,50:0.30:164
chr7	158552398	rs896860	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	158554087	rs369682300	G	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr7	158555706	rs844521	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	158566138	rs842447	T	C	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	158566217	rs842448	C	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	158586138	rs2602552	T	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	158590512	rs2788501	T	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	158590547	rs11404991	G	GA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-1.144;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr7	158590740	rs13233513	A	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr7	158591563	rs374265871	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:117,60:0.34:177
chr7	158591589	rs13222407	G	C	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:99,160:0.62:259
chr7	158591851	rs2709855	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	158649280	rs2788473	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr7	158649304	rs2788472	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	158649334	rs113559273	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	158649373	rs2657385	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr7	158662511	rs3057377	T	TTTTAAAC	1231.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	158662698	rs842696	T	C	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	158663792	rs10240235	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr7	158664298	rs144319444	GTCGCTGCTGGTGACAGGTTGATAGC	G	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	158672476	rs2709859	C	G	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	158672619	rs2788478	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	158679943	rs35814547	AATTG	A	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr7	158684152	rs12672574	A	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:139,80:0.37:219
chr7	158697831	.	C	CTTTTT	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.239;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	158705699	rs373274533	T	C	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:86,172:0.67:258
chr7	158707071	rs2301901	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:72,23:0.24:95
chr7	158711584	rs10279428	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr7	158715219	rs2730238	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	158715264	rs6459913	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	158718749	.	T	G	353.89	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr7	158723014	rs2730241	T	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	158726762	.	C	T	342.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr7	158726798	rs34181207	T	TC	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	158727015	rs35962377	C	CT	2477.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	158727023	rs375331606	A	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr7	158727276	rs2657331	T	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr7	158734630	rs199624775	C	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:247,107:0.30:354
chr7	158738611	rs2527201	G	T	97.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	158827401	rs1017033	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	158827414	rs2071623	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr7	158829285	rs2730223	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	158835780	rs7792767	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:209,80:0.28:289
chr7	158851234	rs2098349	T	G	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-2.968;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:149,111:0.43:260
chr7	158851804	rs2730257	C	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.728;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr7	158851959	rs199756826	T	TA	1945.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:72,95:0.57:167
chr7	158889635	rs114243022	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:52,84:0.62:136
chr7	158902425	rs3793232	T	C	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:60,126:0.68:186
chr7	158930629	rs3812310	T	C	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	158930751	rs3812311	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	158935029	rs71302077	C	CT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.915;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr7	158935333	rs439204	G	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	158937072	rs149110911	C	T	7051.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:137,320:0.70:457
chr8	182807	rs145388347	A	G	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=16.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	182934	rs75792622	T	C	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	182949	rs3008280	C	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr8	194884	rs2906331	C	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	250274	rs144085558	G	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	250330	rs12548502	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	261128	rs11986765	C	T	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	261261	rs11988210	A	G	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	267688	rs2544270	G	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	267750	rs6981999	T	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr8	267831	rs6996567	G	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	280241	rs7388619	A	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	281022	rs11997640	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	328248	rs111731263	C	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	328251	rs144179040	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	328468	rs138294614	AC	A	5231.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	362999	rs71223333	T	TAATG	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.49;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	363192	rs10090550	G	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.35;QD=25.07;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	413193	rs3735924	T	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	413288	rs3735923	A	G	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	418993	rs8049	G	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	442321	rs148202821	C	T	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	442389	rs3779745	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	444485	rs6999653	A	G	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr8	444547	rs373105589	G	A	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	494804	rs10105131	C	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	566417	rs13276545	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	566429	rs13255197	A	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	566432	rs13276566	C	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.08;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	566460	rs13276586	C	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	566619	rs68122960	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	577101	rs336433	A	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	607380	rs1669658	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	607766	rs4735812	C	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	608018	rs6993769	C	T	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	608034	rs10090260	T	C	8795.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	608279	rs1703925	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	609867	.	A	G	1822	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=24;MQ=58.0;NF=57;NR=41;PP=1822;QD=18.946645026;SC=CGAGATCTCCAGTGTGCACTG;SbPval=0.51;Source=Platypus;TC=102;TCF=60;TCR=42;TR=98;WE=609888;WS=609857;set=Platypus	GT:AD:AF:DP	1/1:4,98:0.96:102
chr8	609879	.	AT	CC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=26;MQ=58.86;NF=63;NR=52;PP=2947;QD=20;SC=TGTGCACTGAATATCCTGGGG;SbPval=0.62;Source=Platypus;TC=125;TCF=66;TCR=59;TR=115;WE=609888;WS=609857;set=Platypus	GT:AD:AF:DP	1/1:10,115:0.92:125
chr8	618728	rs2271263	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	623156	rs6559065	G	C	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	1496767	rs2906568	C	G	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	1496788	rs2906569	A	G	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	1574981	rs2272625	G	A	9177.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr8	1616718	rs2235112	A	G	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:3,163:0.98:166
chr8	1616863	rs2235113	C	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr8	1618087	rs11136419	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	1618119	rs4876119	A	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	1645536	rs2293909	T	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	1749333	rs75404472	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	1749361	rs144349670	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	1765371	rs6980781	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	1765396	rs113584779	G	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	1806229	rs4875950	A	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	1806333	.	A	G	189	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=89;MMLQ=27;MQ=60.0;NF=0;NR=8;PP=189;QD=27.9714015684;SC=TCCCCAGGTGAGTCCCCAGGT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=8;WE=1806341;WS=1806323;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	1812535	rs73542439	G	C	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr8	1814588	rs57422654	GAC	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.732;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	1814737	rs2272708	C	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	1817254	rs59431095	C	T	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	1817321	rs55641418	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	1817333	rs149984010	T	TA	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	1817367	rs7003969	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	1830928	rs4543586	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	1830956	rs34599746	TG	T	477.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	1846562	rs755543	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	1857293	rs2294035	A	G	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	1857366	rs2294036	GT	AC	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	1900855	rs7832438	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	1901110	rs74808197	G	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	1905132	rs3735876	G	A	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	2017415	rs17064642	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	2024207	rs7822836	A	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	2024437	rs3817699	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	2024446	rs3817700	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	2037747	rs3817703	C	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr8	2038052	rs2294063	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	2040337	rs6420202	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	2048811	rs4876227	A	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	2050596	rs2294072	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	2063920	rs34379172	CAT	C	1770.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=43.19;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	2064121	rs12548396	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	2077072	rs2280902	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	2088896	rs3736659	G	A	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	2091184	rs2280904	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	2112004	rs17064804	T	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	2112013	rs17752600	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=39.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	2112080	rs33945248	G	GTT	882.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;MQRankSum=0.550;QD=25.22;ReadPosRankSum=-1.524;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr8	2148365	.	TGTG	T	98.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	2148697	.	T	G	185.78	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	2148771	rs7008255	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2148863	.	T	A	1134.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	2148906	rs147691288	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2149037	rs117726758	T	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	2149043	rs117095828	T	G	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	2149072	rs117535536	C	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	2149151	rs140779219	G	GC	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	2796277	rs585000	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	2806920	rs5741961	G	GAAAGA	1396.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	2807783	rs35043129	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	2813083	rs4875856	G	C	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	2832139	rs667595	C	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	2836102	rs615578	C	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	2857701	rs79229511	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	2857710	rs11995459	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	2857763	rs7842047	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	2909992	rs6558702	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	2910020	rs6558703	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	2910223	rs6420209	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	2954348	rs3112	C	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	2965122	rs113534820	C	CTGTTTT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	2965209	rs1531351	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	2965244	rs3824271	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=25.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	2966072	rs3802291	G	T	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	2967609	rs898510	G	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	2967631	rs898511	G	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	2967639	rs898512	G	T	229.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	2967757	rs898513	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	2975905	rs2045638	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	3019592	rs11998250	A	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	3038525	rs259859	T	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	3059365	rs5888954	TA	T	105.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	3076667	rs28377033	A	G	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	3077005	rs17079639	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	3141551	rs75649972	G	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	3141586	rs4875508	T	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	3141723	rs58993422	G	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr8	3165788	rs17079859	C	G	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	3165814	rs1393843	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	3166034	rs17079864	G	C	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	3226919	rs270096	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	3245054	rs73657835	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	3253768	rs3802303	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	3253939	rs3802304	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	3253942	rs3802305	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	3263758	rs12543118	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	3265590	rs10088378	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr8	3265845	rs11775235	C	T	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	3351264	rs9314495	G	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	3432433	rs74646066	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	3432692	rs71850597	TAA	T	86.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.86;ReadPosRankSum=1.029;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	3443799	rs5888973	GA	G	299.74	.	AC=1;AF=0.500;AN=2;DB;DP=30;MQ=60.36;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr8	3470751	rs73491464	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	3474377	rs201725715	TA	T	2040.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;MQRankSum=0.417;QD=40.01;ReadPosRankSum=2.186;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr8	3474387	rs115334710	A	T	2056.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.361;QD=40.33;ReadPosRankSum=1.483;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr8	3611582	rs140950734	GA	G	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	3807319	rs2740867	C	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	3807503	rs2554516	T	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	3807667	rs2627515	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	3855302	rs1863475	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	3855337	rs17068476	C	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	4494811	rs2617007	T	G	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	6266693	rs1550698	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	6266774	rs1550697	G	A	625.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.58;ReadPosRankSum=-0.965;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr8	6272185	rs2440437	G	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	6272399	rs2305022	G	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	6272477	rs2515415	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	6272481	rs2442545	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	6272532	rs2515417	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	6272543	rs55687318	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	6302418	rs2515569	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	6303024	rs115033462	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	6335073	rs111731804	G	GA	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6366338	rs2515416	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6582485	rs2980686	A	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	6588392	rs59149072	A	AT	304.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.701;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr8	6669631	rs28432964	G	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	6673377	rs11338621	CA	C	9505.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	6681256	rs9772979	A	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6686721	rs9692693	C	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	6690173	rs2978902	G	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	6690215	rs2978901	G	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	6690276	rs2741098	T	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	6692909	rs2978895	G	C	208.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	6692968	rs2977806	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	6728116	rs1800971	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	6728298	rs2738047	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	6735300	rs2293958	T	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	6735423	rs1800972	C	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	6735431	rs1799946	C	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	6783459	rs13439322	A	C	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	6793375	rs41396548	A	G	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6793540	rs736227	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	6793581	rs2738100	A	G	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:4,92:0.96:96
chr8	7308386	rs1042797	T	C	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.01;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	7686323	rs201085281	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.58;QD=22.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	7718266	rs3860876	A	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.51;QD=25.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	8234077	rs4840952	G	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	8234192	rs4840953	G	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	8234218	rs4840954	CG	TA	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	8234682	rs147629264	C	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	8234714	rs3896980	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	8234868	rs150979349	C	CGCCGCT	3761.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	8559898	rs11995449	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	8560602	rs2280560	C	T	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr8	8560909	rs12153	G	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	8643387	rs10903311	G	A	64.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	8643582	rs2271340	C	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	8643725	rs2271341	T	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	8655023	rs3748144	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	8747537	rs399123	T	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	8747894	rs429433	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	8860620	rs2288672	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	8866661	rs9329175	G	A	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	8869035	rs9650628	C	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	8869199	rs9650616	T	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	8869277	rs28665409	G	A	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	8873646	rs3895823	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	8887566	rs34111588	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	8905926	rs2921379	A	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	9563797	rs11343041	CT	C	288.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr8	9577940	rs6601360	T	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr8	9593081	rs4841208	A	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	9620573	.	ATTTT	A	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.68;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	9629781	rs149376959	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	9760822	rs73662598	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	10065583	.	G	A	36.74	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	10102863	rs4841293	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	10285825	rs10903326	T	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr8	10383226	rs4521726	C	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	10388749	rs4841366	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	10390320	rs10106714	C	T	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	10396054	rs6601483	A	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	10464755	rs55642448	C	T	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	10464885	rs56382513	T	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr8	10465748	rs11783478	T	C	14580.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	10465771	rs11785822	G	T	14705.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr8	10465942	rs28446662	T	A	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	10467124	rs4841399	G	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	10467207	rs4840498	C	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	10467517	rs116752225	C	G	11052.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.13;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr8	10467576	rs4840499	T	C	19832.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=43.21;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr8	10467581	.	C	CTTTAGTCCCCTCTAACTGCACCCCCTCTTCTTGCAGCCCTTCTTCTGT	28310.73	.	AC=2;AF=1.00;AN=2;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=63.19;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr8	10467652	rs4840501	G	C	16503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.00;MQRankSum=-0.295;QD=31.02;ReadPosRankSum=1.534;SOR=0.329;set=HC	GT:AD:AF:DP	1/1:1,531:1.00:532
chr8	10468172	rs4840502	G	A	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	10469817	rs6996950	G	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	10470941	rs4840503	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	10480730	rs144348443	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	10530037	rs11250057	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	10530218	rs11250058	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	10532355	rs4841419	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	10532401	rs4840505	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	10544722	rs77867564	C	T	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr8	10548370	rs60900921	A	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	10555104	rs12680711	T	C	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	10555191	rs146081802	G	A	6650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.78;ReadPosRankSum=-1.275;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,256:0.99:258
chr8	10557760	rs57041981	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	10558078	rs59747969	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	10583203	rs10110624	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	10583279	rs143587868	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	10583506	rs4841432	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	10584212	rs10100209	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	10584288	rs10100333	C	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	10587963	rs28438834	C	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	10623138	rs1078543	T	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	10623534	rs71516594	C	A	201.94	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:4,7:0.64:11
chr8	10677792	rs2409653	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	10683614	rs72549106	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	10683623	rs2271357	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	10689050	rs6991526	T	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	10689142	rs7004998	G	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	10690244	rs2292371	T	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	10690319	rs2292370	G	A	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	10690543	rs3062483	CAGA	C	1306.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	10691489	rs11996727	C	T	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	10692129	rs78397737	A	T	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	10692158	rs2271355	C	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	10692359	rs1549796	C	T	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	10782442	rs4841459	A	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	10859901	rs57406643	G	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	10920326	rs6601555	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	10965627	rs10097387	C	A	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	10971477	.	C	G	661.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr8	10981588	rs114399739	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr8	10995042	rs3736014	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	10995060	rs3021496	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	10995185	rs7827026	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	11058892	.	CGG	C,CG	1961.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.833;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.308;QD=23.64;ReadPosRankSum=0.599;SOR=0.728;set=HC	GT:AD:AF:DP	1/2:5,25,53:0.30,0.64:83
chr8	11155613	rs2409754	A	G	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	11157617	rs116655282	C	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr8	11162602	rs2256016	C	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	11174484	rs11784572	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	11188922	rs76944947	T	C	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.791;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-17.319;QD=2.75;ReadPosRankSum=-3.311;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:250,78:0.24:328
chr8	11204165	rs2572387	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	11204184	rs11784458	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	11204755	rs11777746	T	C	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	11295511	rs2001463	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr8	11296091	rs1057750	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	11301753	rs3021513	A	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	11400628	rs12386974	C	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	11405437	rs6994605	G	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	11414013	rs11250147	G	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	11414237	rs2306234	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	11416122	rs2467518	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	11417493	rs10098664	T	C	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	11418385	rs2898289	G	A	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	11418773	rs4841561	C	T	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr8	11421358	rs10097005	C	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr8	11421384	rs10097015	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr8	11421793	rs1042689	C	T	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	11422170	rs7840433	A	G	4392.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.05;ReadPosRankSum=1.745;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,106:0.99:107
chr8	11422180	rs73663168	C	T	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	11606312	rs3735819	T	C	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11612698	rs804280	C	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	11616122	rs3729857	G	C	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	11618998	rs804285	G	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	11619261	rs2740431	T	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	11619334	rs811966	C	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	11619635	rs2645455	T	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	11629119	rs804269	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	11629241	rs804267	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	11643915	rs804292	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	11660051	rs2645429	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	11666158	rs138750911	C	G	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	11666218	rs71711801	GTCCCAC	G	15370.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=3.656;MLEAC=2;MLEAF=1.000;MQ=61.15;MQRankSum=3.060;QD=42.46;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:1,361:1.00:362
chr8	11666450	rs138224306	C	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	11683653	rs904011	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	11687938	rs1293313	G	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	11689228	rs2409836	T	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	11695872	rs10903343	T	C	797.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.17;ReadPosRankSum=2.066;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr8	11702542	rs8898	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	11703005	rs187694088	C	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	11703243	rs146909557	C	T	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	11704719	rs1692817	C	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	11706581	rs13332	T	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	11710301	rs1293291	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	11710756	rs114046772	G	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	11710888	rs12338	G	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	11839799	rs6991081	A	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	11839963	rs58052842	G	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	11840011	rs7004833	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	11872560	rs111242314	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.68;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	11872642	.	A	C	50.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.16;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	11872723	rs11784716	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	11872732	rs56279307	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	11872734	rs55907235	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	12516857	rs1808161	T	C	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	12584659	rs10095845	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	12589179	rs3802269	C	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	12592956	rs13251315	C	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	12593045	rs13272425	A	G	111.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	12598608	rs4831354	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	12600622	rs7837242	C	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	12809667	rs2272624	A	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	12809691	rs6993941	A	G	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	12809700	rs2272623	G	A	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	12870139	rs12156247	G	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	12878499	rs114522552	T	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	12878637	rs528255	A	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	12878677	rs622106	T	C	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	12878755	rs61736893	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	12878807	rs3739310	T	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	12879062	rs503550	T	C	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	12879099	rs502882	G	A	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	12879334	rs608909	T	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	12879539	rs608052	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	12879600	rs498852	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	12888600	rs28431407	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	12888793	rs10108086	C	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr8	12888908	rs7826836	T	G	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:4,133:0.97:137
chr8	12888997	rs573652	T	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	12947705	rs57393239	TG	T	811.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	12948951	rs609020	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	12950315	rs568182	G	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	12952174	rs5889417	CA	C	451.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.456;QD=13.29;ReadPosRankSum=-0.402;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:4,30:0.88:34
chr8	12952230	rs658948	C	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr8	12952293	rs658856	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	12957475	rs532841	C	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	12960383	rs116544823	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	12990354	rs7013311	C	T	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	13072177	rs3739300	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	13258936	rs289583	T	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	13356424	rs3736135	G	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	13356802	rs3816747	G	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	13356818	rs11203494	TT	CG	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	13424583	rs13273355	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,96:0.49:197
chr8	13425353	rs11203497	T	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr8	13965581	rs11336839	AT	A	523.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr8	14095250	rs1478030	A	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr8	14181512	rs73664303	A	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	15095085	rs4831331	C	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	15095296	rs11782187	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	15095332	rs11782191	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	15508117	rs73665467	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr8	15519581	rs78390882	T	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.129;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr8	15556360	rs5889594	A	AT	1100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.312;QD=11.84;ReadPosRankSum=0.367;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:22,71:0.76:93
chr8	15556548	rs56250968	G	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	15590866	rs2111752	T	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.13;ReadPosRankSum=1.664;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	15601096	rs17121892	G	A	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,108:0.47:231
chr8	15606042	rs17121904	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.594;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr8	15606182	rs7820648	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	15615179	rs3834708	CCT	C	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	15967762	rs35205590	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr8	15977869	rs35619534	G	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr8	15978063	rs4338104	C	T	8382.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr8	16001217	rs35288445	T	TATA	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	16001241	rs33954820	A	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=1.413;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	16007649	.	GTATATATATA	G,GTATA	130.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=5;set=Intersection	GT:AF:DP	1/1:1.00:2
chr8	16007661	.	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr8	16012648	rs2229388	G	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.558;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,30:0.43:70
chr8	16012694	rs34505916	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.195;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr8	16012742	rs34820840	C	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.216;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	16032742	rs35874867	G	A	2862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.651;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:139,146:0.51:285
chr8	16035302	rs414580	T	A	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	16043667	rs435815	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	16043913	rs370067	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	16043927	rs442677	A	G	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	16850498	rs1721100	C	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr8	16859398	rs10448135	C	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	16885062	rs28539976	G	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr8	16907125	rs2014286	G	A	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	16935234	rs10098337	G	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	16942837	rs2285264	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr8	16942849	rs2285265	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr8	17042129	rs75130109	C	CCT	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr8	17042416	rs2517086	G	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	17067574	rs73198534	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,35:0.38:91
chr8	17068013	rs1548350	T	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=2.254;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr8	17090117	rs143765013	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr8	17092164	rs2959606	G	T	11005.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr8	17100357	rs2904701	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17104735	rs59276128	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr8	17105749	.	A	G	66	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5103;HP=1;HapScore=2;MGOF=14;MMLQ=27;MQ=60.0;NF=4;NR=1;PP=66;QD=20.1542425094;SC=AAAGATGACAACATTGTTAAG;SbPval=0.59;Source=Platypus;TC=6;TCF=5;TCR=1;TR=5;WE=17105757;WS=17105739;set=Platypus	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	17125895	rs59713854	A	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.449;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr8	17157259	rs6992513	G	A	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17157279	rs57246269	C	CCAT	337.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.79;ReadPosRankSum=-0.674;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr8	17159812	rs6587028	G	A	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	17166765	rs1548353	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	17166866	rs62498845	G	A	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.164;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:55,74:0.57:129
chr8	17170645	rs4921749	T	A,C	1200.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/2:0.59,0.41:51
chr8	17170687	rs10113185	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr8	17188911	rs3213603	A	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-1.587;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr8	17198890	rs116677265	G	A	2835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.290;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:167,151:0.47:318
chr8	17218629	rs1024355	G	A	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:127,112:0.47:239
chr8	17230579	rs35105012	G	A	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	17230644	rs7388581	G	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	17270640	rs13268193	A	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:70,95:0.58:165
chr8	17270729	rs143977631	C	T	5887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.074;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:237,292:0.55:529
chr8	17270770	rs75437306	T	C	5866.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:244,289:0.54:533
chr8	17270787	rs67972978	A	G	17764.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr8	17396439	rs75080313	T	TC	4262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.082;QD=17.69;ReadPosRankSum=1.041;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:129,112:0.46:241
chr8	17396441	rs199757672	A	C	4271.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.403;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=0.913;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:129,111:0.46:240
chr8	17396442	rs76647699	T	C	4244.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.628;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=0.912;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:128,110:0.46:238
chr8	17401364	rs368416506	CCTT	C	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	17401878	rs2517252	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=2.400;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:43,37:0.46:80
chr8	17401883	rs149651448	TC	T	1377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=2.590;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:46,37:0.45:83
chr8	17406367	rs11373918	GT	G	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr8	17412333	rs2301539	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	17421025	rs192511141	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	17421279	rs2588173	T	C	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	17422434	rs368013577	AT	A	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.862;QD=7.61;ReadPosRankSum=-1.205;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr8	17422717	rs7838611	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr8	17486282	rs2229084	T	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	17491467	rs35456129	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	17491730	rs7006613	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	17539206	rs2410495	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:197,128:0.39:325
chr8	17539315	rs2410497	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr8	17539329	rs2410498	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr8	17541766	rs180909453	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	17541784	rs2898459	C	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	17554847	rs75287318	T	C	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	17581700	rs2904724	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-2.120;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr8	17611959	rs17690844	T	G	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.194;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:184,96:0.34:280
chr8	17612456	rs11203910	C	T	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr8	17612875	rs3739407	A	G	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:155,150:0.49:305
chr8	17731961	rs2653406	G	A	2755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.543;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:114,141:0.55:255
chr8	17732084	rs2517294	GC	CA	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.462;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=1.583;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	17742953	rs2073563	T	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr8	17743020	rs484373	G	A	3378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=2.196;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:129,169:0.57:298
chr8	17743256	rs369898	G	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	17753657	rs500282	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr8	17753873	rs3896063	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr8	17793093	rs445422	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr8	17796382	rs412750	AC	GT	4958.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;JOINED;set=Intersection	GT:AD:AF:DP	0/1:142,130:0.48:272
chr8	17812926	rs208754	G	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr8	17814915	rs208753	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr8	17819761	rs208060	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.23;ReadPosRankSum=-1.658;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	17827260	rs3214087	A	AC	2083.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr8	17849147	rs370429	C	T	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:107,151:0.59:258
chr8	17867275	rs443743	T	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.867;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr8	17868029	rs2467556	C	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr8	17868245	rs2467555	C	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-0.918;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	17871563	rs73666809	G	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	17916224	rs420610	A	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17916553	rs7465164	C	T	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	17916598	rs33985304	CT	C	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17918934	rs10103355	A	G	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	17920807	rs7824644	A	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	17921921	rs2073574	T	C	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr8	17924609	.	T	TGCACCTGTGCTGTATATCTAAGACATACA	589.73	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=98.29;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	17928711	rs11785746	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	17928753	rs113896339	G	GAAATA	2924.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=45.70;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	17941415	rs58870421	C	T	9671.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	18074536	rs7387461	G	A	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	18077007	rs10106882	G	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	18257795	rs1041983	C	T	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:104,112:0.52:216
chr8	18257854	rs1801280	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:108,85:0.44:193
chr8	18257994	rs1799929	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr8	18258316	rs1208	G	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr8	18258370	rs1799931	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr8	18413603	rs75481591	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	18413875	rs2260920	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	18413893	rs112511528	C	CA	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	18414870	rs2717725	T	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	18415081	rs2634454	G	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	18432578	rs2248559	C	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	18457957	rs2932001	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	18513274	rs17518764	T	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:140,121:0.46:261
chr8	18513317	rs144754256	C	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,84:0.44:191
chr8	18620570	rs9792382	T	C	11989.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:2,472:1.00:474
chr8	18623128	rs17127176	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr8	18656601	rs2248631	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	18656644	rs60806935	A	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr8	18656805	rs2306825	G	A	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr8	18656888	rs3214999	AG	A	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:98,57:0.37:155
chr8	18658750	rs1386692	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	18658929	rs1386691	C	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	18659019	rs1386690	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	18659765	rs2638646	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	18659780	rs2632848	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	18659882	rs3837206	GA	G	609.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-2.043;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr8	18659928	rs2632847	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	18661932	rs60951997	TAA	T,TA	853.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;QD=23.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:0,25,12:0.68,0.32:37
chr8	18662204	rs73666724	C	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:144,111:0.44:255
chr8	18725428	rs17127370	A	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:94,121:0.56:215
chr8	18729459	rs13273954	T	C	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:106,145:0.58:251
chr8	18729496	rs13263453	G	A	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:93,142:0.60:235
chr8	18729817	rs7016219	GT	AG	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;JOINED;set=Intersection	GT:AD:AF:DP	0/1:75,91:0.55:166
chr8	18793697	rs10092681	T	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr8	18941656	rs10102338	G	T	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-1.376;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr8	19190491	rs1574288	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr8	19190692	rs1574287	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr8	19192192	rs17128221	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr8	19192332	rs56005620	G	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr8	19218666	rs140756695	T	TTTTTG	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-1.939;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	19218766	rs4921637	A	G	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.846;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr8	19221705	rs11996859	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,59:0.43:137
chr8	19230955	rs143003649	G	GTA	52.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	19277735	rs7016592	A	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	19277817	rs6999786	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.871;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr8	19297583	rs13278459	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	19316086	rs12155539	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:115,52:0.31:167
chr8	19362768	rs7017776	C	T	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:114,142:0.55:256
chr8	19363425	rs6984644	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr8	19456473	rs4244454	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	19456536	rs75855293	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr8	19456801	rs114224852	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr8	19456924	.	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.629;QD=4.14;ReadPosRankSum=0.020;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr8	19680736	rs12547934	T	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.658;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	19680979	rs4464983	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=-0.031;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	19681647	rs2410612	G	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	19682545	rs3816246	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	19682592	rs7018076	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	19689633	rs4434638	T	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	19689821	rs4615593	G	A	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	19699191	rs34564004	G	T	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-1.070;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr8	19803996	rs56321069	T	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr8	19810826	rs248	G	A	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:67,99:0.60:166
chr8	19816934	rs301	T	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr8	19818436	rs316	C	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	19819536	rs327	T	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr8	19822830	rs4922115	G	A	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.833;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:67,78:0.54:145
chr8	20003431	rs35711001	AT	A	171	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.717;QD=6.84;ReadPosRankSum=-0.141;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr8	20004826	rs17215766	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr8	20005716	rs903997	G	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	20007100	rs60330468	CCT	C	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=1.803;QD=14.15;ReadPosRankSum=-1.484;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr8	20007125	rs10216526	C	G	2740.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.168;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.639;QD=27.14;ReadPosRankSum=3.347;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:4,97:0.96:101
chr8	20028553	rs7828538	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	20031756	rs115751163	C	T	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=0.108;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr8	20031756	.	CTA	TTT	446	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=11;NR=5;PP=446;QD=31.2167421789;SC=CAATTTCTACCTATCCAGGTG;SbPval=0.58;Source=Platypus;TC=42;TCF=29;TCR=13;TR=16;WE=20031766;WS=20031746;set=Platypus	GT:AD:AF:DP	0/1:26,16:0.38:42
chr8	20031758	rs139168039	A	T	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=0.256;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:39,35:0.47:74
chr8	20035809	rs1532446	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.44;ReadPosRankSum=0.615;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	20036043	rs1908809	C	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=-0.848;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr8	20036048	rs141770744	A	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.92;ReadPosRankSum=-0.222;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	20036095	rs2279708	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	20036521	rs1390937	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	20036713	rs1390938	A	G	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	20036827	rs2270637	C	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,20:0.25:80
chr8	20068163	rs7460146	T	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	20068912	rs76750405	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.25;ReadPosRankSum=1.068;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	20069273	rs142952762	A	AAGTT	1647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.644;QD=20.09;ReadPosRankSum=0.461;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr8	20069789	rs10156354	G	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.250;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:95,59:0.38:154
chr8	20077983	rs149793493	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr8	20107143	rs904003	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	20110641	rs2645386	C	T	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:124,139:0.53:263
chr8	21550768	rs15881	A	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:134,80:0.37:214
chr8	21550800	rs1128397	A	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:191,123:0.39:314
chr8	21552189	rs28564089	G	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr8	21563803	rs74934179	A	C	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:87,71:0.45:158
chr8	21564069	rs10099437	A	G	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr8	21766900	rs17853066	G	A	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	21766960	rs146656524	T	C	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:91,122:0.57:213
chr8	21767275	rs2242240	C	G	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	21767493	.	A	AT	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=4.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.238;SOR=1.625;set=HC	GT:AD:AF:DP	0/1:54,40:0.43:94
chr8	21769556	rs138692748	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr8	21824547	rs4872191	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	21842023	rs1872220	TT	GA	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	21844577	rs148246058	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr8	21844864	rs142481748	G	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr8	21845428	rs2306645	T	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	21846586	rs2306646	G	C	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr8	21847735	rs145596615	C	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr8	21849605	rs141170270	T	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr8	21856405	rs149113507	T	C	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:150,175:0.54:325
chr8	21861663	rs10866837	G	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	21862430	rs10548676	TA	T	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.743;QD=1.13;ReadPosRankSum=-0.653;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:65,26:0.29:91
chr8	21862551	rs1058486	A	G	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr8	21890581	rs1947985	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.92;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	21890581	.	TAGTCCCCG	CAGTCCCCA,CAGTCCCCG	368	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=25;MQ=60.0;NF=16,27;NR=10,12;PP=368,125;QD=16.2103028793;SC=TGCCTGAGGCTAGTCCCCGAG;SbPval=0.29;Source=Platypus;TC=39;TCF=27;TCR=12;TR=26,39;WE=21890597;WS=21890571;set=Platypus	GT:AF:DP	0/1:0.67:39
chr8	21890589	rs1947986	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.513;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr8	21891939	rs10089142	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.314;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr8	21891968	rs4871915	C	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	21892263	rs748468	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	21895036	rs73543600	A	G	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.427;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:80,70:0.47:150
chr8	21900505	rs3176266	C	G	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:186,130:0.41:316
chr8	21900757	rs900779	A	G	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.687;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.253;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:157,161:0.51:318
chr8	21904032	.	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr8	21904212	rs1078363	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	21905789	.	G	A	982.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr8	21924297	rs9657287	C	T	130.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	21924743	rs11135821	G	A	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	21924778	rs11135822	T	G	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	21924944	rs11135823	A	G	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	21924970	rs56171291	A	G	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:129,122:0.49:251
chr8	21925214	rs6997244	C	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,61:0.56:108
chr8	21925249	rs58895660	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr8	21926365	rs59430850	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr8	21927137	rs12680100	G	A	13822.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,521:1.00:523
chr8	21927211	rs12681799	C	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr8	21927460	rs7386762	C	G	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:234,251:0.52:485
chr8	21930007	rs3824334	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr8	21930068	rs3824336	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	21931141	.	CAAA	C	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=54.25;ReadPosRankSum=1.112;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	21931166	.	AAGAAAAAAAAAAAGAG	A	657.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.500;MQ=62.79;MQRankSum=-1.327;QD=9.97;ReadPosRankSum=-0.914;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr8	21931170	rs199820139	AAAAAAAAAAGAG	A	1581.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.500;MQ=62.79;MQRankSum=1.344;QD=23.97;ReadPosRankSum=1.018;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr8	21931200	rs73545580	G	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr8	21931426	rs55686889	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr8	21937581	rs7001965	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr8	21937667	rs6557781	T	C	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:225,249:0.53:474
chr8	21937840	rs6983048	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:138,117:0.46:255
chr8	21937870	rs7835670	G	A	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:134,171:0.56:305
chr8	21938037	rs7006378	G	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr8	21939435	rs6557782	C	T	7526.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:298,363:0.55:661
chr8	21947422	rs116038426	G	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:104,101:0.49:205
chr8	21952226	rs1456	T	C	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=2.220;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:72,109:0.60:181
chr8	21954968	.	G	C	89	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=5;HapScore=2;MGOF=13;MMLQ=19;MQ=58.41;NF=4;NR=3;PP=89;QD=17.6816017925;SC=CTCAGTACCCGCCAGGCATGC;SbPval=0.25;Source=Platypus;TC=12;TCF=9;TCR=3;TR=7;WE=21954976;WS=21954958;set=Platypus	GT:AD:AF:DP	1/0:5,7:0.58:12
chr8	21955116	rs11352	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr8	21956108	rs35497596	A	G	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr8	21958333	rs1552283	T	C	19368.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr8	21959992	.	ACTGGTG	A	2508.73	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr8	21964802	rs1552286	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	21965113	rs3739435	T	C	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr8	21966700	rs57316099	GC	G	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	21966707	rs58343576	CG	C	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=44.38;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	21966882	.	G	GCTGCGGAGCCCGCTCCCAGTCC,GCTGCGGAGCCCGCTCCCAGTCCCTGCGGAGCCCGCTCCCAGTCC	974.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=48.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:0,13,7:0.65,0.35:20
chr8	21973970	rs6557829	C	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr8	21974032	rs6557830	A	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr8	21976381	rs59952427	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.27;ReadPosRankSum=-0.097;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	21976387	rs75600662	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.17;ReadPosRankSum=-0.187;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	21976625	rs7006229	A	G	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:251,171:0.41:422
chr8	21976710	rs7014851	T	C	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:206,146:0.41:352
chr8	21976872	rs12677278	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	21977898	rs11990451	G	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:91,63:0.41:154
chr8	21978072	rs11135859	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	21978088	rs11779694	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	21978469	rs57903149	A	G	2758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=1.189;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:203,154:0.43:357
chr8	21978578	rs58080661	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:119,111:0.48:230
chr8	21981170	rs75362423	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:45,82:0.65:127
chr8	21982997	rs56140348	A	G	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:74,103:0.58:177
chr8	21983190	rs78703240	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,61:0.47:129
chr8	21984650	rs12675745	A	G	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	21984945	rs12675375	C	T	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:99,169:0.63:268
chr8	21984984	rs201085506	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:82,109:0.57:191
chr8	21984999	rs77758962	G	A	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:111,76:0.41:187
chr8	21996623	rs59742344	C	A	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:155,176:0.53:331
chr8	22017498	rs8192316	G	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	22019208	rs28438700	G	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	22020066	rs13248346	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	22021739	rs3216166	G	GA	5612.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.68;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	22021883	rs7592	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	22033615	rs6984210	C	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.270;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:61,36:0.37:97
chr8	22033959	rs67370089	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr8	22034309	rs59101470	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr8	22037736	rs57535646	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	22052883	rs11995171	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr8	22053163	.	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.525;QD=0.42;ReadPosRankSum=-3.857;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr8	22059606	rs13257482	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	22066855	rs4463424	C	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	22069018	rs11778448	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr8	22079355	rs4872422	A	G	7167.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr8	22081708	rs4075536	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr8	22084503	rs11547656	C	T	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:135,154:0.53:289
chr8	22085260	rs10100426	T	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	22103161	rs6982634	T	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr8	22105502	rs1126677	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr8	22145319	rs7832819	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.612;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	22167386	rs79513486	G	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr8	22167613	rs6557986	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr8	22167691	rs182498466	A	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	22210425	rs187588124	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	22262098	rs896375	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr8	22262321	rs896378	T	C	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:229,207:0.47:436
chr8	22262418	rs2293144	A	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr8	22266054	rs3817445	G	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	22267385	rs3802199	A	G	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=3.028;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	22272226	rs2280522	A	G	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22272361	rs35335672	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr8	22273687	rs6558052	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	22273829	rs6558053	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	22275108	rs28409480	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	22275419	rs11997061	T	C	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	22291564	rs74841576	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr8	22298839	rs9886589	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr8	22379952	.	TA	T	28	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=1;PP=28;QD=15.0;SC=ATCTTCCTATTAAAAAAAATT;SbPval=0.87;Source=Platypus;TC=6;TCF=3;TCR=3;TR=3;WE=22379960;WS=22379942;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	22385148	rs373674026	AT	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.561;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr8	22385944	rs78316918	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.42;ReadPosRankSum=-0.566;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	22385979	rs28764004	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=0.424;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	22389900	rs2449340	T	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	22396781	rs5890041	TC	T	254.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	22397057	rs28764006	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr8	22398414	rs7430	G	C	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	22415573	rs10104875	G	A	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.495;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr8	22415604	rs10096986	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=1.444;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:44,49:0.53:93
chr8	22418855	rs114930131	G	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr8	22419056	rs113637100	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr8	22419191	rs2469764	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr8	22419231	rs139959984	C	G	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr8	22421355	rs2449336	A	G	167.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr8	22421395	rs2469762	G	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	22422923	rs960509	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr8	22424789	rs73548002	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.064;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr8	22428658	rs2449331	T	C	9949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.892;QD=11.40;ReadPosRankSum=2.351;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:388,485:0.56:873
chr8	22432377	rs710098	C	A	11094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.971;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:440,539:0.55:979
chr8	22442287	rs4872003	A	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:87,96:0.52:183
chr8	22442661	rs2294047	A	G	5859.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:211,280:0.57:491
chr8	22447426	rs3830696	CGGTCCGGGAG	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.37;ReadPosRankSum=-0.616;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	22457388	rs2272718	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=18.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.514;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr8	22460204	rs34268501	A	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:164,213:0.56:377
chr8	22462374	rs3735901	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.860;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr8	22463623	rs7843828	C	T	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:146,191:0.57:337
chr8	22463697	rs2291230	C	G	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:156,179:0.53:335
chr8	22464064	rs2291232	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr8	22464390	rs2291234	T	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr8	22464980	rs34256757	G	GT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-1.195;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	22465385	rs34027561	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr8	22465427	rs6999893	T	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:70,89:0.56:159
chr8	22470710	rs1871902	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.106;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr8	22471824	rs3736147	G	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:136,155:0.53:291
chr8	22472255	rs71299322	C	CTGCTGCCTTCATCCTGATGGGT	4073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=63.16;MQRankSum=9.823;QD=17.41;ReadPosRankSum=1.413;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:114,120:0.51:234
chr8	22473158	rs11781149	C	T	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:119,153:0.56:272
chr8	22473465	rs7843128	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr8	22477131	rs10551411	ACAT	A	3512.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:79,91:0.54:170
chr8	22481449	rs1871900	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr8	22481977	.	G	A	141	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=3;NR=9;PP=141;QD=14.6476010456;SC=AGATGGGTCCGCTCTTGGAGG;SbPval=0.53;Source=Platypus;TC=31;TCF=7;TCR=24;TR=12;WE=22481985;WS=22481967;set=Platypus	GT:AD:AF:DP	1/0:19,12:0.39:31
chr8	22482799	rs876714	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr8	22482851	rs900268	A	C	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	22487388	rs6558170	C	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr8	22487422	rs6558171	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=1.228;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr8	22491980	rs17746902	G	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,89:0.52:172
chr8	22492052	rs6558172	G	A	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:127,109:0.46:236
chr8	22492103	rs6558173	G	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr8	22492129	rs6558174	A	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr8	22502207	rs34656094	CT	C	4108.73	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:142,136:0.49:278
chr8	22526432	rs149659058	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	22548118	rs149624410	G	C	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:139,106:0.43:245
chr8	22584507	.	C	CT	112.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	22584718	rs1129474	T	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	22785013	rs1553778	T	C	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	22852096	rs78886842	G	A	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.010;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:78,91:0.54:169
chr8	22863004	rs2430811	A	G	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr8	22863017	rs2466179	G	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.971;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:104,100:0.49:204
chr8	22863191	rs2430812	C	T	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	22864622	rs2466178	T	C	18475.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,690:1.00:690
chr8	22865320	rs2430815	T	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	22873107	rs112223910	C	A	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:139,114:0.45:253
chr8	22881852	rs6557609	T	C	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:225,197:0.47:422
chr8	22885109	rs1105944	A	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr8	22886020	rs13265018	A	G	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:136,77:0.36:213
chr8	22886130	rs2293399	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr8	22887013	rs6420148	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr8	22888407	rs10866818	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	22900487	rs73543038	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	22926313	rs1129424	G	A	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr8	22960704	rs6557616	G	C	4134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.401;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:249,219:0.47:468
chr8	22960873	rs10109912	G	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr8	22969091	rs10111172	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	22972321	rs4242389	G	A	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:214,151:0.41:365
chr8	22974325	rs11780493	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	22990193	rs36229757	TTGTGTGTG	T,TTGTGTG	837.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.510;QD=22.05;ReadPosRankSum=-1.085;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:4,23,11:0.61,0.29:38
chr8	22995511	rs34622674	T	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:94,55:0.37:149
chr8	23001988	rs1133782	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:122,73:0.37:195
chr8	23002009	rs61756241	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:148,92:0.38:240
chr8	23002030	rs61755337	TG	CT	3987.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;JOINED;set=Intersection	GT:AD:AF:DP	0/1:173,108:0.38:281
chr8	23002124	rs78332874	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:190,121:0.39:311
chr8	23002404	rs113577648	G	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.202;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:50,40:0.44:90
chr8	23002417	rs112458971	G	A	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.318;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=0.314;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:66,48:0.42:114
chr8	23002422	rs113394561	TC	T	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.197;QD=14.97;ReadPosRankSum=-0.183;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:71,51:0.42:122
chr8	23002615	rs77617349	C	G	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-3.979;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:227,140:0.38:367
chr8	23003292	rs35213435	G	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:180,138:0.43:318
chr8	23003394	rs111569580	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr8	23004369	rs61160958	C	CAT	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr8	23004374	rs58151289	C	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr8	23004614	rs113061719	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr8	23004629	rs3924519	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr8	23005813	rs7831991	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	23005850	rs112108401	C	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=1.226;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:90,71:0.44:161
chr8	23049292	rs2230229	C	T	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	23054635	rs78885531	A	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:100,89:0.47:189
chr8	23054779	rs3824218	T	C	12191.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr8	23056904	rs17088980	T	G	4354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-2.287;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:234,222:0.49:456
chr8	23057316	rs11993498	G	T	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:88,140:0.61:228
chr8	23058188	rs4872077	T	C	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:118,79:0.40:197
chr8	23069574	rs13274366	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr8	23104195	rs2294123	G	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr8	23112662	rs3736025	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	23114203	.	G	GTT	99.82	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	23117643	rs2294125	T	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,69:0.60:115
chr8	23118155	rs9828	T	C	2763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.067;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:115,141:0.55:256
chr8	23145320	rs11777755	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	23152334	rs15946	A	G	9386.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr8	23152410	rs137952235	CTG	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.783;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:121,15:0.11:136
chr8	23167353	rs1063582	T	G	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr8	23167560	rs12548642	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	23174425	rs3824213	T	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	23174481	rs7357444	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr8	23174748	rs13250587	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	23177619	rs13254579	C	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	23186007	rs1051146	T	C	12631.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr8	23186222	.	A	ATGTG	140.14	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=35.04;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	23190941	rs1010156	T	C	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr8	23225745	rs2294133	C	T	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:109,159:0.59:268
chr8	23226014	rs6999447	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr8	23261651	rs6989053	C	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr8	23282441	rs11276760	GCATTATACAA	G	2859.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr8	23290304	rs60497420	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=1.631;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	23290451	rs17089244	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr8	23292985	rs3736652	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr8	23293144	rs112058580	A	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	23299225	rs34849865	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr8	23301340	rs11787224	A	C	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr8	23302164	rs2272640	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	23307580	rs11777391	G	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr8	23429448	rs59804560	A	AT	255.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr8	23431045	rs1810193	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	23431407	rs3174040	A	G	5117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.481;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:188,246:0.57:434
chr8	23432314	rs1801451	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr8	23432326	rs1398232	T	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.13;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	23432326	.	TTTGCAC	ATTGCAC,ATTGCAT	737	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=21;MMLQ=27;MQ=59.44;NF=4,1;NR=28,11;PP=737,563;QD=24.1178503921;SC=CAGTGTAACCTTTGCACGTAC;SbPval=0.56;Source=Platypus;TC=32;TCF=4;TCR=28;TR=32,12;WE=23432340;WS=23432304;set=Platypus	GT:AF:DP	0/1:1.00:32
chr8	23432332	rs8534	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=2.272;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr8	23538908	rs35350906	A	G	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:161,179:0.53:340
chr8	23540417	rs11781886	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	23712066	rs5890129	G	GT	1905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=11.128;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.797;QD=5.76;ReadPosRankSum=0.541;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:178,153:0.46:331
chr8	24151533	rs200545785	AC	A	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	24187360	rs148363179	CTG	C	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr8	24187397	.	TGTGAGA	TGA,T	159.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=39;set=Intersection	GT:AF:DP	0/1:0.36:28
chr8	24193264	rs4872222	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	24199063	rs11989219	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr8	24199091	rs11996594	C	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr8	24199218	rs36041430	C	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:174,98:0.36:272
chr8	24199318	rs62498242	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr8	24199354	rs62498243	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	24200774	rs11987905	A	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	24208649	rs10092862	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	24208847	rs7009516	G	A	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	24211278	rs7815643	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	24211331	rs7814768	G	A	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	24211884	rs10694022	A	ATGTC	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	24211993	rs10610134	ACTAT	A	2327.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	24212040	rs1058914	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr8	24241973	rs10087305	G	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,63:0.58:108
chr8	24256470	rs2291577	C	T	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=1.707;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:144,87:0.38:231
chr8	24257137	rs17799264	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	24261526	rs3765124	A	G	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:158,131:0.45:289
chr8	24333601	rs10100176	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	24339679	rs13255694	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	24339896	rs11348969	GA	G	401.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	24348221	rs1492401	T	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	24348241	rs2242354	A	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr8	24350188	rs1352952	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr8	24356818	rs13259668	A	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr8	24357917	rs4242407	G	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.28;ReadPosRankSum=-0.262;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	24358219	rs17739399	A	G	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=2.264;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:72,72:0.50:144
chr8	24359068	rs13277171	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:75,58:0.44:133
chr8	24359125	rs3071035	ATT	A	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.035;QD=9.78;ReadPosRankSum=1.683;SOR=2.000;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	24363792	rs6982442	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	24365157	rs34338646	TCA	T	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	24365181	rs11307556	AT	A	211.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.12;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	24366020	rs2290150	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr8	24773291	rs73545170	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr8	24774683	rs196864	C	A	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	24811064	rs11300136	AG	A	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	24812947	rs6982740	C	G	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr8	25132735	rs4478580	T	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	25149449	.	G	A	386.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr8	25149501	rs78044122	T	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr8	25156296	rs2956656	T	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	25158026	rs2709639	G	A	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.565;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:89,72:0.45:161
chr8	25158072	rs5890219	AT	A	4692.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=21.73;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	25159665	rs868335	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	25174710	rs2709627	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr8	25181356	rs2666174	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	25190308	rs73216275	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=0.475;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	25200148	rs10110351	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	25202915	rs2468901	A	G	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	25203022	rs2468902	A	G	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	25209144	rs7012335	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	25225804	rs2257081	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:73,96:0.57:169
chr8	25227226	rs2048084	G	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr8	25227229	rs2048083	T	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.613;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	25227234	rs2048082	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.60;ReadPosRankSum=-0.578;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	25227255	rs2659578	C	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	25230168	rs2271108	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:91,64:0.41:155
chr8	25230267	rs2271106	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr8	25231044	rs12676152	T	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	25231117	rs3215159	C	CT	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr8	25231385	rs2271105	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr8	25234858	rs2659585	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	25235055	rs34962551	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr8	25237801	rs11989035	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:73,54:0.43:127
chr8	25237963	rs17053525	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr8	25247821	rs113940021	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.990;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr8	25257256	rs145318735	A	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	25265719	.	C	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-1.959;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr8	25267622	rs2709618	A	G	7703.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:264,382:0.59:646
chr8	25280621	rs17053646	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.215;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr8	25280666	rs2709608	A	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	25280800	rs6185	C	G	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.052;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:117,97:0.45:214
chr8	25287556	rs965130	A	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr8	25293858	rs2012592	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.779;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr8	25296930	rs2271112	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=0.367;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr8	25301759	rs57257880	C	CT	106.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.370;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.63;ReadPosRankSum=-0.493;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr8	25317691	rs6987936	A	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	25317824	rs1506863	A	T	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:169,165:0.49:334
chr8	25317987	rs115875864	C	T	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:225,153:0.40:378
chr8	25323777	rs10108752	T	C	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	25325634	.	CAAAAAAAAAA	C,CAAAAAAAAAAA	557.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	0/1:0.84:19
chr8	25365278	rs8537	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr8	25708267	rs10866845	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr8	25720267	rs28454030	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:123,66:0.35:189
chr8	25744257	rs6557865	G	A	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	25766177	rs74844693	T	G	192.53	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr8	25890478	rs1872497	G	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	25890549	rs7826952	T	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr8	25897958	.	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.12;ReadPosRankSum=0.241;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	25898316	rs12544694	C	T	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	25902171	rs11135911	CG	C	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	25902501	rs7007677	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.291;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:51,59:0.54:110
chr8	26240646	rs1055479	A	G	3196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.327;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:152,163:0.52:315
chr8	26249018	rs2304300	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr8	26434795	rs431246	C	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr8	26441275	rs415524	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr8	26441562	rs408753	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr8	26481771	rs327222	T	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	26483998	rs72008768	AACACAC	AAC,A	474.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	1/1:0.86:14
chr8	26484061	rs112899484	C	T	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.025;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr8	26485318	rs41276287	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.180;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr8	26510792	rs708621	T	C	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr8	26614516	rs7825488	C	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,95:0.47:201
chr8	26614706	rs11309325	CT	C	3619.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	26614749	rs61759712	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr8	26623384	rs3802241	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	26623477	rs34651910	C	CTTGTGAAAAGAAA	2181.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	26627894	rs148618594	C	T	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:129,149:0.54:278
chr8	26628028	rs1048101	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	26636906	rs60593443	T	A	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-2.055;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:85,67:0.44:152
chr8	26636925	rs6989854	T	C	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=33.55;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	26906538	rs73564844	T	C	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr8	26943632	rs935408	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr8	26943929	rs1814489	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.976;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr8	26944600	rs2028908	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr8	26944733	rs17056759	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:132,61:0.32:193
chr8	27094548	rs10217008	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr8	27096634	rs1542185	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr8	27099879	rs3739212	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr8	27101204	rs4733040	T	A	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	27101204	.	TTA	ATC	2327	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=35;NR=25;PP=2327;QD=39.674464581;SC=CCTACGCCCCTTAACACATGG;SbPval=0.49;Source=Platypus;TC=62;TCF=37;TCR=25;TR=60;WE=27101214;WS=27101194;set=Platypus	GT:AD:AF:DP	1/1:2,60:0.97:62
chr8	27101206	rs7830662	A	C	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	27145412	rs145738779	C	T	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:323,239:0.43:562
chr8	27147716	rs12386801	A	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.211;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr8	27168820	rs7006183	C	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr8	27204663	rs2874826	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	27204857	rs4629818	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	27205046	rs57735330	AG	A	5288.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	27277537	rs1030526	G	A	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	27279705	rs2241652	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	27288033	rs7827965	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	27289612	rs11988406	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	27289935	rs2303881	T	C	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	27289963	rs2303882	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	27291557	rs919493	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	27291749	rs12056620	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	27292287	rs1896959	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.45;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	27292292	rs1896960	A	G	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27293865	rs7005936	C	T	1921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=0.322;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:2,80:0.98:82
chr8	27293989	rs2241654	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	27294532	rs2163176	C	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	27294606	rs7005954	G	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	27294823	rs6996922	T	C	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr8	27295109	rs2288617	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	27297696	rs2241657	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27303126	rs4733064	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	27308538	rs751018	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	27310546	rs3735758	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27311703	rs1879184	T	C	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	27312040	rs10093964	C	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	27312135	rs7007145	G	A	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	27315726	rs1879183	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	27315876	rs1879182	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	27315900	rs1879181	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	27321597	rs3735757	G	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27324822	rs891398	T	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	27328354	rs2472554	G	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	27328639	.	TC	T	983.73	.	AC=1;AF=0.500;AN=2;DP=87;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr8	27348626	rs72473929	G	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	27361241	rs17057255	C	T	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	27361329	rs17057269	C	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	27369334	rs7816586	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	27373923	rs4149243	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr8	27382803	rs6992963	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr8	27394387	rs59189067	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr8	27456253	rs2279590	T	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	27457507	rs9331937	G	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:90,105:0.54:195
chr8	27461789	rs9331918	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr8	27462481	rs7982	A	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:96,86:0.47:182
chr8	27467821	rs2070926	C	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	27467984	rs9331893	C	T	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:255,186:0.42:441
chr8	27491654	rs472707	C	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.736;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr8	27507374	rs482078	C	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:110,87:0.44:197
chr8	27509153	rs2246847	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,57:0.43:132
chr8	27559214	rs66683138	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.710;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr8	27620064	rs111692819	T	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr8	27630152	rs7842666	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=2.024;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr8	27634064	rs4732748	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:161,113:0.41:274
chr8	27641609	rs1824449	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr8	27645704	rs6558014	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr8	27650428	rs4732754	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	27665848	rs10101429	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr8	27667719	rs1052874	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr8	27667969	rs2294092	C	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr8	27679981	rs3779620	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:96,56:0.37:152
chr8	27680576	rs727813	G	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr8	27680809	.	T	A	31	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5051;HP=1;HapScore=2;MGOF=18;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=31;QD=21.9237375157;SC=GGGAAAAAGCTTGAAAGAAAT;SbPval=1.0;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=27680817;WS=27680799;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr8	27685485	rs10100417	C	T	74.18	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	27685521	rs78755489	AC	A	107	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	27690557	rs10113621	A	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.164;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr8	27690780	rs141552109	GGGTGGATCACCTGAGGTC	G	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	27729532	rs61737291	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:206,114:0.36:320
chr8	27737198	rs4732610	A	G	5383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-1.504;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:364,281:0.44:645
chr8	27743401	rs2726928	T	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr8	27743535	rs2685381	T	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,79:0.53:149
chr8	27762235	rs2726984	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.388;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr8	27762537	rs939706	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	27764576	rs7826640	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:103,106:0.51:209
chr8	27764627	rs2726987	T	C	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr8	27767066	rs17058204	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr8	27767171	rs2726991	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,111:0.61:182
chr8	27767231	rs17058207	C	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr8	27767305	rs2726992	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr8	27767339	rs2726993	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr8	27779545	rs10103504	C	T	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:150,186:0.55:336
chr8	27779811	rs4732613	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr8	27779880	rs61455593	T	TA	646.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	27779885	rs59195507	T	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	27880826	rs921597	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr8	27886700	rs9644134	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr8	27886903	rs9314357	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:123,114:0.48:237
chr8	27887047	rs11786995	G	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr8	27887813	rs7817068	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	27898452	rs12675621	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=1.439;QD=8.41;ReadPosRankSum=-1.186;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr8	27898580	rs17058502	T	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:125,88:0.41:213
chr8	27898694	rs17058503	C	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,59:0.35:169
chr8	27915830	rs4336563	T	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	27918057	rs7817227	T	C	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr8	27925204	rs4732620	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:120,75:0.38:195
chr8	27925988	rs115910447	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr8	27927849	rs6998705	C	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	27954625	rs78313841	A	G	245.31	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr8	27957529	rs2290370	C	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr8	27957556	rs2290369	G	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	27964056	.	CAAAAAAAAAAAAAA	C	557.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.04;QD=39.84;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	27967856	rs3213997	A	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	28013579	rs4732832	A	C	5382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-1.389;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:2,211:0.99:213
chr8	28016002	rs149274779	AAATAAAG	A	2052.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	28047291	rs78176341	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr8	28210613	rs6558057	G	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	28214096	rs2272749	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	28214472	rs17059010	C	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr8	28217089	rs73570788	G	A	14610.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr8	28218282	rs73570790	G	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	28218304	.	C	T	140.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	28218363	rs73570792	G	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	28218387	rs17059022	T	C	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	28286174	rs1055741	T	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	28286885	rs57374675	C	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	28304769	rs1390963	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=1.338;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:60,54:0.47:114
chr8	28321153	rs7822086	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr8	28322864	rs7812609	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.621;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	28341058	rs7843764	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	28362877	rs111513017	A	AT	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	28384712	rs2241802	A	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr8	28413375	rs62001924	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,39:0.37:106
chr8	28570998	.	C	CTT	1583.73	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr8	28574803	rs240951	G	A	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:212,185:0.47:397
chr8	28625587	rs10106906	G	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	28633098	rs241203	A	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	28633124	rs7462400	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	28638223	rs241196	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.78;ReadPosRankSum=-2.170;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	28645271	rs241187	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr8	28651296	rs36122628	CA	C	45.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.444;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	28651298	rs2665911	A	C	211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=0.033;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr8	28651300	rs2665912	A	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.377;SOR=0.272;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr8	28653928	rs3824092	A	G	133.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	28671222	.	G	T	408.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr8	28692783	rs28522383	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr8	28692925	rs116547778	C	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr8	28695361	rs3735724	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr8	28707622	.	G	GA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.477;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr8	28837450	.	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.70;ReadPosRankSum=-1.113;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	28876151	rs374206533	GAA	G	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	28876221	rs7837237	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr8	28900087	rs1948132	T	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr8	28900298	rs78793590	G	A	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-1.662;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:80,64:0.44:144
chr8	28905044	rs10107494	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr8	28966855	rs116143067	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr8	28967676	rs115037161	T	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr8	28979949	rs4732905	C	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr8	28981712	rs147283211	T	TAC	833.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	28984572	rs3763566	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	28989789	rs9644054	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr8	28997850	rs2279444	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	28998179	rs2246691	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr8	29005093	rs6986672	A	G	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	29005128	rs13263819	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:50,91:0.65:141
chr8	29005143	rs6986829	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr8	29006063	rs34477845	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	29023421	.	T	TTCGATTGTAGATCGAAGTACC	443.74	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	29033422	rs6558098	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	29053761	rs10547393	TA	T	1684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.299;QD=10.94;ReadPosRankSum=0.494;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:33,121:0.79:154
chr8	29102997	rs79327218	T	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr8	29107388	rs2954794	G	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	29197672	rs583034	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	29207872	rs2637819	G	A	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	29923732	rs2271367	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	29927300	rs6468093	C	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	29927321	rs6468094	A	G	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	29931375	rs986636	T	C	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	29935655	rs71204258	C	CAA	191.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;QD=19.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	29935696	rs71204259	GA	G	501.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=0.789;QD=12.55;ReadPosRankSum=-0.230;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr8	29940271	rs13279112	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	29953256	rs56969689	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	29989564	rs7844812	A	G	6552.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.044;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.824;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,261:1.00:262
chr8	29996158	rs4733141	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	29996256	rs7813902	T	C	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	30001915	rs12546113	T	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	30013759	rs7012749	A	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	30210274	rs4349946	T	C	9532.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	30210460	rs10106469	G	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:87,54:0.38:141
chr8	30242747	rs7813046	G	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-0.964;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:31,48:0.61:79
chr8	30402611	rs147493636	CA	C	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.124;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr8	30402817	rs2915595	G	A	297.85	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr8	30416431	rs10088145	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr8	30469805	rs7815625	A	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr8	30472340	rs28647953	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr8	30537223	rs10715710	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.03;ReadPosRankSum=0.608;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	30539623	rs2250192	T	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-1.918;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr8	30541915	rs1465477	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	30546636	rs2551715	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr8	30567423	.	TA	T	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=13.609;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=3.476;QD=4.37;ReadPosRankSum=0.833;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr8	30584923	rs2251780	G	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:52,118:0.69:170
chr8	30584944	rs2280856	C	G	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.005;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:183,77:0.30:260
chr8	30585092	rs2280855	A	G	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=2.238;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:210,113:0.35:323
chr8	30585164	rs2280854	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr8	30601617	rs73672521	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr8	30608773	rs1991111	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	30608976	rs2911690	C	T	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	30609061	rs2911689	T	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.046;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr8	30609078	rs2911688	A	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.532;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr8	30620840	rs11388922	G	GT	4018.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	30620964	rs2956010	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	30623996	rs2956016	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	30655363	rs1116003	G	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	30670163	rs1131305	G	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr8	30695226	rs2720593	C	T	3648.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:141,175:0.55:316
chr8	30700638	rs112636382	C	T	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr8	30702218	rs323343	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,23:0.29:78
chr8	30702525	rs323344	A	C	9729.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr8	30702602	rs323345	T	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	30702785	rs61736163	T	C	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:63,82:0.57:145
chr8	30703431	rs323346	T	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	30704725	rs62000451	C	T	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:134,176:0.57:310
chr8	30706224	rs323347	A	G	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	30717452	rs16877429	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr8	30717575	rs35279485	TA	T	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.965;QD=6.80;ReadPosRankSum=0.342;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr8	30725122	rs323368	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	30732539	rs16877457	T	A	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:148,212:0.59:360
chr8	30854033	rs2725371	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	30916085	rs2737316	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	30922041	rs11574198	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	30922346	rs2725346	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	30924557	rs1800389	C	T	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:71,119:0.63:190
chr8	30933859	rs4733221	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr8	30941317	rs2737325	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.687;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=-4.718;QD=3.72;ReadPosRankSum=-0.178;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr8	30954244	.	G	GT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.472;QD=2.70;ReadPosRankSum=1.023;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr8	30958353	rs3087419	CT	C	3211.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	30958565	rs114569873	A	G	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-0.663;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:49,86:0.64:135
chr8	30973840	rs3087423	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:76,28:0.27:104
chr8	30973957	rs1800392	G	T	9760.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr8	30977717	rs2725352	T	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	30982203	rs11574322	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	30982552	rs3087421	G	C	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=1.871;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:31,37:0.54:68
chr8	30990110	rs2252480	G	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	30999123	rs2737335	G	A	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	30999280	rs1801195	G	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	30999394	rs2725363	A	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	31000012	rs2725364	T	C	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	31000243	rs2725365	T	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	31004566	rs3087424	T	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr8	31005017	rs3087415	T	TC	6779.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	31497672	rs113317778	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.786;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr8	32406148	rs7834206	C	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:112,79:0.41:191
chr8	32406382	rs73234136	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	32474242	rs57944175	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr8	32505337	rs34918173	C	A	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr8	32505909	rs146965117	TAG	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.073;QD=0.60;ReadPosRankSum=-0.770;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:174,20:0.10:194
chr8	33230142	rs115787522	G	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=2.254;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:45,59:0.57:104
chr8	33246538	rs16880849	A	G	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	33246685	rs16880852	G	A	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	33311091	rs7009689	T	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.064;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	33313329	rs2732315	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=26.59;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	33313421	rs11337905	GA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.255;QD=2.96;ReadPosRankSum=2.154;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr8	33313573	rs77939466	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	33342880	rs116694505	C	T	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:104,126:0.55:230
chr8	33347907	rs2732274	T	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	33354873	rs11987085	C	A	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.31;QD=23.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	33355886	rs2676419	G	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	33356074	rs6468171	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	33356191	rs11445524	G	GT	46.27	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	33356561	rs34242409	AG	A	233.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	33356817	rs151322804	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.333;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:87,55:0.39:142
chr8	33356825	rs368990473	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.873;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr8	33357818	rs13439524	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr8	33367253	rs78086946	A	C	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:108,95:0.47:203
chr8	33369944	rs2304748	T	C	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:170,120:0.41:290
chr8	33369994	rs3098657	A	G	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:147,109:0.43:256
chr8	33370985	rs2581896	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr8	33371146	rs2581897	T	G	5427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=0.064;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:216,146:0.40:362
chr8	33371150	rs2581898	A	G	5445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.369;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:209,146:0.41:355
chr8	33371199	rs2581899	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:116,87:0.43:203
chr8	33416189	rs3735950	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr8	33416222	rs3735951	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:59,38:0.39:97
chr8	33416303	rs35879627	G	GA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr8	33451026	rs2044162	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr8	33451085	rs7008370	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:130,81:0.38:211
chr8	35093110	rs115017574	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.12;ReadPosRankSum=1.379;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	35093427	rs10694226	C	CAGCT	310.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=38.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	35402107	rs139147788	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.934;QD=3.84;ReadPosRankSum=0.263;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr8	35406807	rs376958606	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr8	35425870	rs2589340	T	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	35583692	rs6983275	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr8	35583815	rs6996645	G	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr8	35616857	rs35487923	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,55:0.37:147
chr8	35624407	rs58832562	G	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr8	35624434	rs16884404	C	A	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,81:0.43:187
chr8	36672001	rs58652932	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	36698552	.	GT	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.022;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:70,58:0.45:128
chr8	36776267	rs10108041	T	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.370;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr8	36779848	rs60216672	GA	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.623;QD=5.72;ReadPosRankSum=0.570;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr8	36780209	rs1010669	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.05;ReadPosRankSum=-0.893;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	36788479	rs16885577	A	G	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.890;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:33,43:0.57:76
chr8	36788693	rs6986249	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.178;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr8	36790339	rs2275960	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr8	37333523	rs73675810	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr8	37455990	rs1008547	G	C	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:250,263:0.51:513
chr8	37593324	rs78971298	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr8	37595641	rs75303006	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.202;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	37597898	rs112575270	G	A	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:169,145:0.46:314
chr8	37602288	rs111777506	G	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:144,110:0.43:254
chr8	37602393	rs78504213	T	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr8	37605541	rs374948130	GA	G	6024.73	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:425,314:0.42:739
chr8	37605599	rs112468369	G	C	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:287,201:0.41:488
chr8	37607756	rs112004658	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	37611707	rs112278207	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.047;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr8	37620076	rs6468438	A	G	1120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=1.589;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr8	37623731	rs10089505	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=1.123;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:30,60:0.67:90
chr8	37623842	rs113010140	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr8	37672375	rs113977307	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:117,67:0.36:184
chr8	37686570	rs112087656	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	37686749	rs6468442	A	G	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	37686815	rs376413572	C	T	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:179,155:0.46:334
chr8	37688512	rs111502620	C	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	37689038	rs144648554	G	A	4253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.150;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:147,207:0.58:354
chr8	37690867	rs73673891	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr8	37693302	rs10101560	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	37697098	.	G	A	5106.77	.	AC=1;AF=0.500;AN=2;DP=575;set=Intersection	GT:AD:AF:DP	0/1:308,259:0.46:567
chr8	37699195	rs4976898	C	G	2102.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=0.221;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:2,83:0.98:85
chr8	37704368	rs114295504	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr8	37706057	rs11777510	A	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr8	37720647	rs115499937	A	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.81;ReadPosRankSum=-0.614;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	37728017	rs7817179	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.21;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	37728017	.	ATT	GTG,GTT	168	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=5,12;NR=9,17;PP=168,157;QD=15.8191339187;SC=CTTGGTGGCCATTGCATTCAT;SbPval=0.73;Source=Platypus;TC=29;TCF=12;TCR=17;TR=14,29;WE=37728027;WS=37728007;set=Platypus	GT:AF:DP	0/1:0.48:29
chr8	37728019	rs7820872	T	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=1.392;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	37730017	rs16887092	G	A	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:129,138:0.52:267
chr8	37730368	rs12541651	G	A	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	37730456	rs7341564	G	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr8	37796644	rs28723477	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.466;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	37821853	rs2071493	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr8	37822769	rs4997	C	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr8	37823798	rs4994	A	G	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:150,128:0.46:278
chr8	37888017	rs3750243	C	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr8	37963988	rs111603667	A	G	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.935;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:43,51:0.54:94
chr8	37972411	rs78064147	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr8	37974347	rs60833081	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr8	37985897	rs2843740	A	G	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr8	37986561	rs2517394	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	38003787	rs2720050	T	C	13708.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr8	38005835	rs2229620	T	C	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	38006330	rs35520501	TC	T	5778.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	38027519	rs16887236	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr8	38028726	rs2843739	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	38135745	rs190644512	C	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr8	38245598	rs35044708	CT	C	1638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.600;QD=9.00;ReadPosRankSum=0.486;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:50,132:0.73:182
chr8	38254696	.	C	CT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-1.302;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr8	38373924	rs2461327	T	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr8	38385795	rs2445020	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr8	38385914	rs1378332	C	T	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:163,206:0.56:369
chr8	38458371	rs3802323	G	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:87,116:0.57:203
chr8	38458552	.	G	GTCT	8387.73	.	AC=2;AF=1.00;AN=2;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	38458659	rs327934	C	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	38458696	rs7812668	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr8	38458802	rs327935	A	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr8	38646059	rs112544220	C	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	38677242	rs16887780	G	A	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:169,130:0.43:299
chr8	38684853	rs2037204	T	C	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr8	38697644	rs113184721	G	A	186.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.09;ReadPosRankSum=-0.674;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr8	38697649	rs13262797	T	C	186.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.09;ReadPosRankSum=-0.674;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr8	38704196	rs6997066	A	C	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:113,137:0.55:250
chr8	38705639	rs71721705	G	GA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.092;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:114,33:0.22:147
chr8	38709402	rs4577922	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	38801542	rs116823722	A	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr8	38809663	rs6984871	A	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	38809860	rs111655245	G	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr8	38814772	rs372187088	CT	C	924.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr8	38814774	rs370649071	T	C	933.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr8	38826290	rs6996274	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr8	38827185	rs5891050	GC	G	4721.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	38835456	rs4733960	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	38835666	rs4733961	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	38840591	rs7814264	C	T	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:94,107:0.53:201
chr8	38845644	rs202203479	T	TA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.674;QD=4.98;ReadPosRankSum=-0.000;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	38845716	rs7823125	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-0.157;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	38848850	rs4733895	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	38851204	rs28626007	A	C	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:127,110:0.46:237
chr8	38853620	rs6991968	G	A	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-1.491;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:77,84:0.52:161
chr8	38853983	rs7840270	C	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:84,104:0.55:188
chr8	38854041	rs10105311	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr8	38865692	.	C	CT	25	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5644;HP=13;HapScore=3;MGOF=11;MMLQ=20;MQ=60.0;NF=1;NR=2;PP=25;QD=10.0;SC=CCTTAATATCCTTTTTTTTTT;SbPval=0.48;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=38865700;WS=38865682;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	38872186	rs7833611	C	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr8	38876466	rs6474518	T	C	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=0.363;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr8	38876466	.	TCC	CCT	431	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=3;MGOF=29;MMLQ=27;MQ=60.0;NF=5;NR=8;PP=431;QD=37.2667596048;SC=TTTCTTCTTTTCCATGAAAAG;SbPval=0.77;Source=Platypus;TC=35;TCF=16;TCR=19;TR=13;WE=38876476;WS=38876456;set=Platypus	GT:AD:AF:DP	1/0:22,13:0.37:35
chr8	38876468	rs6474519	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=1.851;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:42,33:0.44:75
chr8	38884342	rs10652213	G	GTTCT	5511.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	38911953	rs9643905	C	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	38912121	rs67125687	GA	G,GAA	339.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.452;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.250;SOR=0.352;set=HC	GT:AD:AF:DP	1/2:11,30,19:0.50,0.32:60
chr8	38928984	rs34398586	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.143;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr8	38964647	rs4517088	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr8	38965271	rs59118660	C	T	7133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.168;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:299,347:0.54:646
chr8	38965460	rs193225824	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr8	38991720	rs6997278	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr8	39004620	rs35335280	A	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	39022384	.	ATTG	A	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.642;QD=8.08;ReadPosRankSum=-2.210;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr8	39068890	rs11786404	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr8	39080632	rs7845771	C	G	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	39091526	rs4515515	T	C	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:160,173:0.52:333
chr8	39114676	rs200807312	GT	G	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.324;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr8	39114949	rs73608630	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	39114979	rs142025667	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=-1.471;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	39128387	rs4733994	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr8	39128510	rs11347842	AT	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.92;ReadPosRankSum=-1.517;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	39133206	rs4733913	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr8	39141099	rs77779698	C	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.36;ReadPosRankSum=0.798;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr8	39141120	rs28705715	C	A	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-1.073;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr8	39142264	rs7008808	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr8	39142550	rs4551318	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	39311600	rs7813010	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	39311677	rs7834545	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.622;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr8	39312886	rs10097769	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	39330916	rs142026482	ATC	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-1.934;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:64,8:0.11:72
chr8	39442292	rs7007924	T	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	39463063	rs4236751	T	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	39487022	rs3735881	C	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.727;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:79,55:0.41:134
chr8	39495325	rs3824144	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	39496029	rs12708194	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	39502845	rs143674281	C	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=0.547;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr8	39503079	rs6474161	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	39505826	rs3735880	C	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr8	39505831	rs145386216	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr8	39521419	rs6988389	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	39525750	rs2305392	C	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	39534795	rs142419787	T	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	39607105	rs112217136	C	CATGT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=2.236;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	39618637	rs10093751	G	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.183;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr8	39626819	rs146225617	T	C	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr8	39694610	rs13255763	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr8	39694860	rs61429352	C	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr8	39694900	rs112475501	G	GT	59.19	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	39775680	.	T	A	1985.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:151,108:0.42:259
chr8	39775845	rs10113525	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	39780922	rs67116979	CAA	C	864.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.17;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:5,34:0.87:39
chr8	39782407	rs9298586	T	G	372.85	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr8	39836855	rs200311081	CATTTATT	C	137.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	39840234	rs4736794	A	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr8	39842349	rs7001170	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.99;ReadPosRankSum=-2.610;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr8	39842515	rs143103125	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.63;ReadPosRankSum=1.440;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	39842893	rs73621309	A	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr8	39843114	rs139637779	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	39843139	rs2729472	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	39845511	rs73621312	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr8	39871036	rs2955897	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	39871298	rs5891075	T	TTAA	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.11;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	39872668	rs2955902	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	39872676	rs5891076	GA	G	811.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,44:0.92:48
chr8	39872866	rs2981161	A	C	9572.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	39873188	rs2981162	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	40011079	rs6474226	G	A	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	40389823	rs1429965	C	A	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr8	40389842	rs1429966	T	C	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr8	40389933	rs4038741	TAA	T	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	40532142	rs10504034	A	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr8	40554742	rs11781516	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	40554994	rs12546561	C	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	40665997	rs1512214	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	40666094	.	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.029;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:129,38:0.23:167
chr8	40666189	rs11777437	T	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	40666257	rs11776726	A	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr8	41132742	rs6998772	A	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr8	41132888	rs10111098	C	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	41297486	rs10637700	T	TTTTG	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr8	41348200	rs201273276	AGGCCCGCGGT	A	350.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	41348534	rs3780023	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	41354981	.	AT	A	86.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	41363690	rs111703526	A	AT	192.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	41391588	rs10096250	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	41391704	rs10096369	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr8	41391761	rs13281038	A	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	41466789	rs12708212	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr8	41472375	rs11995712	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	41517958	rs59908561	A	AG	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	41519248	rs516946	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:178,156:0.47:334
chr8	41519462	rs515071	A	G	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:175,149:0.46:324
chr8	41521663	rs563118	T	C	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr8	41525914	rs750625	C	T	5511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.956;QD=9.14;ReadPosRankSum=1.473;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:316,287:0.48:603
chr8	41529856	rs508112	A	G	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chr8	41545641	rs55846950	A	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr8	41547683	rs7835812	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	41547748	rs7816734	G	A	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	41548003	rs10093583	T	C	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:158,166:0.51:324
chr8	41548207	rs6987255	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	41548207	.	CAC	TAT	596	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=2;HapScore=1;MGOF=7;MMLQ=27;MQ=60.0;NF=1;NR=11;PP=596;QD=54.1223229052;SC=CTCTCCAAGACACACCCTGCC;SbPval=0.64;Source=Platypus;TC=12;TCF=1;TCR=11;TR=12;WE=41548217;WS=41548197;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	41548209	rs6987261	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	41550466	rs113547907	GC	G	850.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr8	41551462	rs35964634	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	41551728	rs13438835	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	41553835	rs2304883	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr8	41555366	rs559651	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.97;ReadPosRankSum=-0.135;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	41555373	rs559000	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.68;ReadPosRankSum=0.921;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	41555473	rs2241896	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr8	41555740	rs492008	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	41556886	rs76627107	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr8	41557096	rs78358384	G	A	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.486;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:67,45:0.40:112
chr8	41557101	rs75330043	A	G	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.242;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:62,44:0.42:106
chr8	41558037	rs16890764	A	G	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:118,98:0.45:216
chr8	41558954	rs79446529	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr8	41559284	rs1020253	C	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	41559470	rs2839767	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.41;ReadPosRankSum=-1.020;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	41559697	rs79505893	G	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr8	41563791	rs1020252	T	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:136,73:0.35:209
chr8	41571905	rs60847205	T	G	286.41	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr8	41572385	rs73619336	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;MQ=59.15;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr8	41574432	rs61073092	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	41574555	rs28533718	C	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr8	41574736	rs575817	A	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	41577121	rs7823698	C	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr8	41580607	rs7826127	T	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	41583261	rs57815524	C	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr8	41585438	rs2304871	G	A	4412.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:153,218:0.59:371
chr8	41585571	rs1872877	C	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	41615429	rs486223	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	41685814	rs12708213	A	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	41686017	rs13439740	C	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:206,142:0.41:348
chr8	41753843	rs77115522	C	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr8	41754127	rs112926512	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr8	41791283	rs3739365	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:173,159:0.48:332
chr8	41794934	rs13748	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:127,86:0.40:213
chr8	41798417	rs3824275	C	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:95,120:0.56:215
chr8	41804047	.	C	CACAT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.81;MQRankSum=3.203;QD=7.49;ReadPosRankSum=0.495;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr8	41805249	rs10504048	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:106,74:0.41:180
chr8	41838503	rs11990460	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr8	41906095	rs3824276	A	G	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:136,143:0.51:279
chr8	42013563	rs150778126	T	TATG	5659.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:144,146:0.50:290
chr8	42022746	rs76570663	G	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr8	42026393	rs7016041	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr8	42037924	rs2020922	T	A	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	42044871	rs8178750	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:139,74:0.35:213
chr8	42044954	rs1058720	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:139,82:0.37:221
chr8	42147894	rs2294097	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr8	42163669	rs3817717	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr8	42172017	rs7814513	C	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr8	42175303	rs2294100	A	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:136,95:0.41:231
chr8	42186579	rs2272732	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr8	42188277	rs17875736	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr8	42188550	rs1057741	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr8	42196441	rs3136717	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:66,44:0.40:110
chr8	42227777	rs34271342	GT	G	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=0.526;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr8	42227788	.	T	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.667;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr8	42229059	rs2307163	G	GT	675.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr8	42231786	rs2073664	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr8	42232160	rs2073663	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr8	42232489	rs2073665	A	G	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:67,93:0.58:160
chr8	42233448	rs10096210	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr8	42253960	rs7818866	G	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	42254048	rs77829339	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.713;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	42259299	rs3736649	A	G	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.367;QD=10.07;ReadPosRankSum=0.256;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr8	42286508	rs79300815	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr8	42295130	.	C	CT	579.94	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr8	42404040	rs2974349	C	T	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	42587796	rs4954	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	42591556	rs73633751	T	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr8	42608199	rs2304297	G	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	42610184	rs35578799	C	CTT	450.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.72;ReadPosRankSum=0.367;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr8	42614378	rs892413	C	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	42620404	rs11985288	C	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr8	42693566	rs111989331	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.705;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	42706166	rs73634693	T	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	42711606	rs7014595	A	G	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,65:0.55:118
chr8	42725178	rs11989986	C	T	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr8	42729214	rs73635307	G	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	42752406	rs113969303	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr8	42761230	rs35347216	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=18.944;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=2.17;ReadPosRankSum=2.162;SOR=3.904;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr8	42761307	rs149930344	T	TC	2180.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:62,82:0.57:144
chr8	42785096	rs112318721	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	42798394	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.618;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.509;QD=1.68;ReadPosRankSum=1.291;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr8	42798658	rs1648120	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr8	42805679	rs137952645	T	TAA	719.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr8	42823480	rs6999489	G	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	42849463	rs73627273	C	G	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.315;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:64,61:0.49:125
chr8	42849523	rs73627274	A	G	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:114,112:0.50:226
chr8	42865406	rs138230096	ATATT	A	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=-0.629;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	42868455	rs5891200	CT	C	244.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=1.472;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr8	42882555	rs111931018	A	ATTTGT	3810.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=47.05;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	42932643	rs58729413	G	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr8	42939934	rs2230266	C	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	42959007	rs5024011	C	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	42977681	rs148949414	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:126,95:0.43:221
chr8	42977762	rs36071326	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:109,119:0.52:228
chr8	42995826	.	C	T	24	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9998;HP=3;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=24;QD=19.5904041824;SC=CGGCGCCGCCCCTATCTCCGT;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=42995834;WS=42995816;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	43013936	rs10958738	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr8	43014307	rs73631573	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	43027652	rs11998092	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr8	43051717	rs111579179	C	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr8	43052839	rs73569592	A	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr8	43054553	rs1126058	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	43147975	rs66932611	T	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr8	43196977	rs112733025	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-0.819;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	43197272	rs73561410	A	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr8	43197438	rs73561413	T	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr8	43212044	.	T	A	690.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr8	47755664	rs138503523	G	GC	1375.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr8	47759712	rs3849804	T	G	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=2.208;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:119,85:0.42:204
chr8	47842316	rs884920	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.80;ReadPosRankSum=1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	47842901	rs6995866	A	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:86,67:0.44:153
chr8	48102390	rs73581099	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr8	48173561	rs192114624	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.46;ReadPosRankSum=2.320;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr8	48243411	rs73582864	G	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,55:0.41:134
chr8	48566595	rs59402950	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.233;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr8	48585975	rs10958274	T	C	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:96,149:0.61:245
chr8	48613061	rs16930248	G	A	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr8	48625142	rs143530291	A	G	225.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	48689366	rs8178258	C	T	2403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.941;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:111,119:0.52:230
chr8	48730178	rs8178207	A	AC	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr8	48771028	rs7463428	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=-0.135;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	48776189	rs6993483	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.074;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr8	48805816	rs11411516	A	AG	9356.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	48815186	rs8178070	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:151,108:0.42:259
chr8	48843189	rs8178035	AC	A	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr8	48843310	rs8178033	G	C	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.499;QD=8.88;ReadPosRankSum=-0.760;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:112,101:0.47:213
chr8	48846519	rs1231202	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	48866788	rs1231203	T	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	48874811	rs11993362	G	C	5511.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:237,276:0.54:513
chr8	48880065	rs6473933	C	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr8	48885436	rs762679	T	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	49641482	rs7011713	T	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=0.812;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	49642465	rs74669650	C	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-1.094;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	49643243	rs966703	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	49643960	rs74697155	C	T	6149.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:319,317:0.50:636
chr8	49987910	rs6984804	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	50449844	rs184117299	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	51306704	rs7015950	A	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	51362462	rs1481475	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	51363078	rs7817955	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	51442650	rs73585148	A	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr8	51571172	rs1911830	G	A	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:120,108:0.47:228
chr8	51571370	rs1911831	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	51571398	rs115819196	C	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	51617430	rs7003356	T	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	51664541	rs11429292	G	GT	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr8	51664842	rs6473337	C	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr8	52232487	rs1052704	G	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.412;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:83,53:0.39:136
chr8	52232624	rs1370446	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr8	52233276	rs7827306	C	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr8	52233299	rs3217441	T	TAGG	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	52233308	.	A	AAC	690.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr8	52233310	rs2304552	T	G	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.275;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr8	52233408	rs7827446	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:166,94:0.36:260
chr8	52252405	.	T	C	22	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=2;MGOF=111;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=22;QD=28.3856062736;SC=TCATTTGGCATGTACAAGGCA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=2;WE=52252413;WS=52252395;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr8	52287420	rs6990005	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr8	52321243	rs2977020	T	C	9224.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr8	52323767	rs73579684	T	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr8	52325691	rs6983918	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr8	52325879	rs1560511	T	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	52336041	rs2060107	G	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	52336182	rs16916235	C	T	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:170,103:0.38:273
chr8	52339153	rs16916255	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr8	52359454	rs151149131	CTA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.077;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.188;QD=1.83;ReadPosRankSum=-0.565;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr8	52361772	rs1431636	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	52366200	rs6473599	G	A	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:98,122:0.55:220
chr8	52366397	rs73581424	A	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.43;ReadPosRankSum=-2.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	52396048	rs1431632	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr8	52412226	rs755311	G	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:184,189:0.51:373
chr8	52505118	rs77121718	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	52567222	rs11989561	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr8	52721952	rs149859309	A	AGCAGCT	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	52730441	rs6768	T	C	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.065;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:602,185:0.24:787
chr8	52730521	rs4401853	C	T	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr8	52733128	rs62506083	T	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.629;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-9.320;QD=8.65;ReadPosRankSum=3.345;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:140,72:0.34:212
chr8	52733214	rs200377849	A	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-3.727;QD=0.45;ReadPosRankSum=0.304;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:62,6:0.09:68
chr8	52733228	rs73592211	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.104;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-2.851;QD=1.86;ReadPosRankSum=-0.688;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr8	52733231	rs75748152	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.783;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-2.936;QD=1.72;ReadPosRankSum=-0.954;SOR=3.199;set=HC	GT:AD:AF:DP	0/1:51,7:0.12:58
chr8	52733340	rs35006940	A	AT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=1.704;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr8	52811681	rs10106734	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	52861127	rs11551686	G	C	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:156,175:0.53:331
chr8	53028758	rs2303459	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	53029130	rs12334321	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	53055353	rs7006725	C	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	53055483	rs7010548	C	T	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr8	53071740	rs73679142	A	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr8	53079336	rs2303457	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr8	53084150	rs73679148	G	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=1.071;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	53126686	rs16917482	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:96,50:0.34:146
chr8	53447256	rs1440798	C	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	53450969	rs13280500	A	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr8	53452359	.	TA	T,TAA	519.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.800;QD=6.93;ReadPosRankSum=0.832;SOR=0.741;set=HC	GT:AD:AF:DP	1/2:16,29,30:0.39,0.40:75
chr8	53454826	rs16917962	C	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:125,158:0.56:283
chr8	53455013	.	GA	G	192.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr8	53540695	rs16918013	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.739;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:97,44:0.31:141
chr8	53543090	.	TA	T	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.488;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:45,38:0.46:83
chr8	53548691	rs7818347	T	C	337.88	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr8	53554876	rs16918021	C	A	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:193,191:0.50:384
chr8	53555221	rs34888689	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr8	53569194	rs16918075	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-1.614;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:80,60:0.43:140
chr8	53570529	rs12708142	C	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	53570800	rs16918077	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	53586363	rs375431419	G	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr8	53626824	rs113231256	G	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-1.267;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr8	54141824	rs963549	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr8	54142157	rs702764	T	C	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:120,157:0.57:277
chr8	54147470	rs7815824	G	A	5102.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:166,231:0.58:397
chr8	54628736	rs3735833	C	A	96.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	54742095	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.847;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr8	54745538	rs6991513	C	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	54871063	rs73589276	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	54882793	rs10095163	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.10;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	54882796	rs10095164	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.80;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	54899788	rs10093311	C	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	54906065	rs11409518	G	GA	212.74	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr8	54912444	rs28575670	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.390;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr8	54965220	rs11549448	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	54965354	rs16919924	T	C	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=2.398;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:102,142:0.58:244
chr8	54967638	rs76859468	A	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr8	55013691	rs77029186	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.34;ReadPosRankSum=-2.625;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	55047719	rs2292589	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.849;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	55048118	rs12679542	G	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr8	55048130	.	CTTTTTTTTT	C	397.06	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr8	55050047	rs7830051	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-2.032;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr8	55059927	rs12679103	T	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.330;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr8	55539395	rs2293869	A	T	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:178,137:0.43:315
chr8	55586301	.	AAAC	A	43.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,4:0.13:30
chr8	55590975	rs382476	G	A	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	55592336	rs405226	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr8	55614012	rs140479147	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr8	55647367	rs370295274	AGT	A	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,16:0.22:74
chr8	56074043	rs2306453	G	C	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.59;ReadPosRankSum=0.128;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:10,35:0.78:45
chr8	56074051	rs2306454	T	C	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.05;ReadPosRankSum=-0.428;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr8	56076708	rs138779096	TTGC	T	6686.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:152,171:0.53:323
chr8	56076886	rs2291184	A	G	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:141,178:0.56:319
chr8	56637895	rs10098084	T	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	56656195	rs7836019	T	C	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	56657801	rs4738457	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	56686224	rs1818	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr8	56708529	rs112069461	T	TG	2029.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr8	56708701	rs10100659	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr8	56711713	rs10109493	A	G	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:128,133:0.51:261
chr8	56717335	rs138013157	TA	T	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr8	56723557	rs7823773	T	G	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:105,124:0.54:229
chr8	56725751	rs7000157	A	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr8	56792490	.	G	T	3171.77	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:125,148:0.54:273
chr8	56792586	rs1050855	G	A	6286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-1.202;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:228,308:0.57:536
chr8	56792685	rs167999	G	A	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	56858888	rs57006402	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr8	56863439	rs7829420	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	56866452	rs2227980	G	A	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr8	56882303	.	A	T	2061.77	.	AC=1;AF=0.500;AN=2;DP=211;set=Intersection	GT:AD:AF:DP	0/1:99,106:0.52:205
chr8	56911861	rs2175487	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	57125270	rs6474051	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	57294907	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.23;ReadPosRankSum=0.552;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	57302927	.	AT	A	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.401;QD=5.97;ReadPosRankSum=1.466;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr8	57335918	rs10110961	G	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:155,119:0.43:274
chr8	57335956	.	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.792;QD=0.96;ReadPosRankSum=-1.299;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chr8	57358251	rs3808634	C	T	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.691;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:56,52:0.48:108
chr8	57358432	rs3808633	G	A	2724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.035;QD=9.46;ReadPosRankSum=-0.258;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:148,140:0.49:288
chr8	57358563	rs3840716	CG	C	4205.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=33.65;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	57878990	rs2135987	T	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.756;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr8	59324042	rs190997696	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr8	59346940	.	T	C	94.28	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	59347184	rs1993453	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr8	59358696	rs7010273	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr8	59404827	rs77341564	T	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	59409760	rs77359018	A	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr8	59410755	rs7825751	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr8	59410884	rs60059260	A	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr8	59477661	rs77422315	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-2.870;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr8	59484899	rs7827910	T	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=2.063;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	59494233	.	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.159;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	59498190	rs12677290	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	59498414	rs76354168	A	T	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:239,153:0.39:392
chr8	59498614	rs6995115	A	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	59508076	rs16923588	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr8	59508244	rs55965030	CT	C	1841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.416;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,59:0.42:140
chr8	59511756	rs10111180	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr8	59512334	rs2680903	G	A	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr8	59518611	rs144708345	A	AAAATAATAAAAT	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	59535859	.	ATT	A	679.19	.	AC=2;AF=1.00;ALERT;AN=2;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.33;MQRankSum=3.883;QD=48.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr8	59535860	.	TT	CG	517	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5002;HP=2;HapScore=3;MGOF=46;MMLQ=24;MQ=64.38;NF=11;NR=3;PP=517;QD=40.7477053473;SC=AAAAAAAGTATTTATAAGTAT;SbPval=0.78;Source=Platypus;TC=21;TCF=15;TCR=6;TR=14;WE=59535869;WS=59535850;set=Platypus	GT:AD:AF:DP	1/0:7,14:0.67:21
chr8	59535861	.	T	TCGAA,TAA	679.19	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:0.93:14
chr8	59544252	rs17206746	A	T	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	59547799	rs75109800	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	59547804	rs10113830	C	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr8	59555731	rs1387222	T	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	59571856	rs59606339	A	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:84,129:0.61:213
chr8	59720604	rs2726600	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	59728336	rs79931905	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr8	59728412	rs78213110	A	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	59764368	.	CAATA	CAATAAATA,C	136.37	.	AC=2,0;AF=1.00,0.00;AN=2;DP=11;set=Intersection	GT:AF:DP	1/1:0.67:6
chr8	59852168	rs3832587	A	AAC	1695.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	59872408	rs116052994	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr8	61121206	rs60352411	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr8	61139280	rs12549573	C	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	61178567	rs61743130	G	A	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	61178574	rs7464181	T	C	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	61178676	rs5891756	CT	C	557.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr8	61192542	rs55948763	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	61193453	rs7002846	A	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	61193522	rs7002871	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.267;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	61193570	rs74792169	C	T	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	61193760	rs10101374	T	G	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr8	61193809	rs10086341	A	G	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	61429877	rs79102981	G	A	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr8	61471310	rs76795709	A	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.146;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	61482686	rs115465202	G	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr8	61488859	rs2946154	A	G	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	61496950	rs3735826	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	61655690	rs7836586	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	61707725	rs4540437	G	A	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	61713126	rs5891777	A	ATGGACT	3288.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:92,85:0.48:177
chr8	61714245	rs10448027	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	61750860	rs7844902	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,95:0.59:161
chr8	61764076	rs4342642	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.71;ReadPosRankSum=0.605;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	61764838	rs41265252	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr8	61765273	rs3763592	C	T	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:134,129:0.49:263
chr8	61765560	rs2068096	G	A	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:234,183:0.44:417
chr8	61878874	rs11986939	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr8	62003453	rs1367972	A	G	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr8	62003547	rs35220668	G	GC	1765.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:108,78:0.42:186
chr8	62003627	rs2882219	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr8	62204753	rs73682212	C	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr8	62371122	rs143532309	GCC	G	2606.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr8	62371260	rs2291607	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr8	62416074	rs7005617	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	62416173	rs16918881	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	62438530	rs4738904	A	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	62460868	rs74526565	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	62465482	rs78684112	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr8	62465580	rs4289805	T	C	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr8	62465795	rs4291265	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.90;ReadPosRankSum=2.093;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	62465814	rs4379440	G	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	62475276	rs3802286	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr8	62479925	rs61226013	T	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:93,82:0.47:175
chr8	62489214	rs55767984	T	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr8	62489334	rs16927574	C	T	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr8	62496415	rs6471962	C	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	62496421	rs35353831	A	ATT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=2.823;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr8	62531670	rs35550451	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	62545288	rs2882462	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr8	62555416	.	G	GA	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.812;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	62563764	rs7016141	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	62595068	rs3750278	C	T	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:82,109:0.57:191
chr8	62626962	rs3829051	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr8	62627004	rs3750279	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr8	62627510	rs4272369	C	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr8	63161462	rs2272014	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-1.197;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr8	63161801	rs115383811	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr8	63161829	rs5020321	C	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr8	63161843	rs76598776	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	63257206	rs73684960	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr8	63296126	rs73684982	T	C	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.078;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:57,104:0.65:161
chr8	63296132	rs10808724	T	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.20;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	63659445	rs75287413	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr8	63902715	rs56081236	T	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr8	63902906	rs78771240	C	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr8	63902958	rs138702093	G	GT	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	63948134	rs6998383	A	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.45;SOR=1.919;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	63948185	rs199816014	TAA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=9.984;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.804;QD=0.40;ReadPosRankSum=0.648;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:142,23:0.14:165
chr8	63976677	rs4606052	C	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	63976754	rs4501570	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	63978658	rs5891887	TA	T	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=22.96;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	63998231	rs72659829	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	64081473	rs192317267	A	G	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:118,116:0.50:234
chr8	64098729	rs58419856	A	AG	2303.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	65290650	rs298212	C	T	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr8	65493429	rs7016250	T	G	5321.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.131;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=0.591;SOR=0.373;set=HC	GT:AD:AF:DP	1/1:3,215:0.99:218
chr8	65494020	.	G	GGCA	4001.73	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:122,110:0.47:232
chr8	65528647	.	C	G	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.213;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:126,79:0.39:205
chr8	65537168	rs73237769	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	66439551	rs7825011	T	C	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	66442851	rs200521355	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=2.190;QD=1.93;ReadPosRankSum=-0.205;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr8	66620359	rs13274205	G	A	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	66691934	rs972362	T	A	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr8	66988806	rs16932468	A	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	66988817	.	G	C	691.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr8	66992737	rs7006209	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:153,121:0.44:274
chr8	66992870	rs11324426	GT	G	454.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr8	67026829	rs78160676	G	C	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.783;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:127,145:0.53:272
chr8	67039605	rs11991549	G	A	4442.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:207,224:0.52:431
chr8	67049255	rs16932554	A	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	67049298	rs73249949	A	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr8	67064654	rs7843605	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=27.33;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	67066512	rs61745245	G	A	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:117,121:0.51:238
chr8	67068131	rs2446433	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	67072164	rs73249998	C	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:105,113:0.52:218
chr8	67089120	.	T	C	3256.77	.	AC=1;AF=0.500;AN=2;DP=348;set=Intersection	GT:AD:AF:DP	0/1:176,171:0.49:347
chr8	67089425	rs6159	T	G	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	67089641	.	C	T	692.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr8	67105379	rs56266342	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.872;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr8	67105436	rs7003450	C	G	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=1.403;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:49,41:0.46:90
chr8	67105449	rs11357679	CT	C	769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.888;QD=6.64;ReadPosRankSum=0.024;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:53,63:0.54:116
chr8	67105646	rs116838593	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr8	67108896	rs16932632	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	67109101	rs11990370	G	T	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:172,151:0.47:323
chr8	67109225	rs1044938	T	C	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	67109297	rs1044942	A	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr8	67344690	rs4737796	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.253;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr8	67357690	rs1025228	G	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	67361018	rs12544088	G	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr8	67361264	rs3739338	T	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr8	67364085	rs2465982	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr8	67380377	rs2719005	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr8	67380528	rs1060242	T	C	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:108,126:0.54:234
chr8	67380677	rs13682	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr8	67411019	rs2251827	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	67514659	.	C	T	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-2.841;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:168,116:0.41:284
chr8	67590447	rs187794631	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr8	67755920	rs7008720	C	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	67789708	rs16933088	T	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr8	67791163	rs181029958	A	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.428;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	67813633	rs2358008	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	67970243	rs6997490	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	67999123	rs75348559	CT	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-1.666;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr8	68062182	.	CTTT	C	424.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.528;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr8	68066151	.	C	CT	20	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.4991;HP=13;HapScore=4;MGOF=26;MMLQ=20;MQ=60.0;NF=0;NR=1;PP=20;QD=25.0;SC=AATCTTTGGACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=1;TCR=2;TR=1;WE=68066173;WS=68066141;set=Platypus	GT:AD:AF:DP	0/1:2,1:0.33:3
chr8	68137315	rs10095446	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr8	68138391	rs142115845	G	A	2358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.893;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:99,116:0.54:215
chr8	68151226	.	G	GT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.683;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr8	68536524	rs11987279	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr8	68929993	rs12549702	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	68931680	rs6984225	G	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	68939640	rs10957414	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr8	68950289	rs6986739	C	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	68965500	rs73267965	C	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	68965521	rs10504417	C	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	68968166	rs1434774	C	A	10920.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	68968171	rs1434775	G	A	10943.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	68993013	rs12682458	AT	GC	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr8	68995404	rs1030751	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.06;ReadPosRankSum=-0.484;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	68995410	rs79583091	TG	T	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.36;ReadPosRankSum=-0.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	68995468	rs1030752	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.963;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr8	68995633	rs1030753	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr8	69002797	rs76085823	C	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.454;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr8	69002816	rs61738008	A	T	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.070;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:61,79:0.56:140
chr8	69002965	rs12544121	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr8	69003009	rs34882769	GT	G	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	69003074	rs11988899	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr8	69012364	rs1529819	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr8	69013863	rs111767404	AC	A	301.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	69013865	rs10098030	G	A	310.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	69015242	rs1014663	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr8	69015990	rs75776795	G	A	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:69,81:0.54:150
chr8	69016055	rs13262734	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr8	69023178	.	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.746;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr8	69026736	rs74352470	C	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr8	69027963	rs35346688	A	AT	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr8	69033212	rs61753702	A	G	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:186,156:0.46:342
chr8	69104521	rs6472389	A	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	69129792	rs60606311	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr8	69136959	rs940665	G	A	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:185,159:0.46:344
chr8	69143712	rs10581964	CTT	C	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.830;QD=9.50;ReadPosRankSum=-1.207;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr8	69217174	rs2692030	T	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	69243745	rs2676639	C	T	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	69351646	rs73260794	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr8	69358772	rs16934634	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr8	69688772	rs7833828	G	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	69699866	.	TA	T	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.205;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	70498552	rs74515192	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr8	70501536	rs16936135	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr8	70505272	rs4737996	A	G	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr8	70513855	rs752040	A	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:143,100:0.41:243
chr8	70515398	rs56091021	C	G	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:115,142:0.55:257
chr8	70516940	rs4737998	G	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	70516969	rs4737284	G	A	285.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=-1.568;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr8	70539575	rs16936186	C	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr8	70539661	rs5892211	C	CA	52	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	70539911	rs4738002	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	70540216	rs3802275	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	70554689	rs7814130	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	70588741	rs10448033	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr8	70588878	rs10448034	T	C	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.406;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:165,124:0.43:289
chr8	70594621	rs73686121	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr8	70674220	rs113683275	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr8	70744147	rs35318751	G	A	6249.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:285,315:0.53:600
chr8	70744812	rs3750266	G	A	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:184,179:0.49:363
chr8	70964399	rs10089937	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	70967607	rs3750225	T	C	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	70967727	rs3750226	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	70967744	rs201316659	CTT	C	259.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	71050596	rs140013944	A	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	71071695	rs2272670	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	71075146	rs10641831	A	ATTT	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=16.30;ReadPosRankSum=-0.389;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr8	71082718	rs2958370	A	G	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	71129120	rs71558586	A	AAC	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	71486568	rs268566	G	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	71495308	rs145198874	GAC	G	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	71495847	rs61065292	A	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-1.314;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr8	71499109	rs61412217	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr8	71510093	rs268626	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	71512349	rs268592	A	T	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.334;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:79,80:0.50:159
chr8	71512377	rs268593	C	T	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.650;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:101,75:0.43:176
chr8	71550058	rs268571	G	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	71550144	rs35571096	A	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=2.594;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr8	71550708	rs49195	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr8	71550895	rs11399242	C	CT	78.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	71646625	rs148334859	G	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr8	72137261	rs13262002	G	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	72755040	rs7812453	A	C	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	72755647	rs35471181	C	CT	6799.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	72875102	rs73685960	C	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr8	72877587	rs58328692	C	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr8	72877722	rs59481685	C	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.867;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr8	72914433	rs35305136	CT	C	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.000;QD=7.33;ReadPosRankSum=1.244;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,31:0.66:47
chr8	72932259	rs66527710	C	T	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:179,153:0.46:332
chr8	72935039	rs10085964	C	T	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.96;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	72935045	rs10086177	G	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	72935944	rs959975	T	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	72936237	rs1384001	C	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	72942210	rs3824151	G	T	3584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=0.725;QD=8.54;ReadPosRankSum=-1.184;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:232,188:0.45:420
chr8	72963109	rs35427625	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.410;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr8	72963135	rs1025927	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.417;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr8	72963258	rs1025928	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	72968097	rs33967604	GA	G	1932.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:59,97:0.62:156
chr8	72975619	rs34929058	GA	G	558.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr8	72975801	rs7819749	T	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	72977703	rs920829	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr8	72981318	rs28546865	G	A	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.148;QD=10.66;ReadPosRankSum=0.130;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:91,107:0.54:198
chr8	72981327	rs1811457	A	G	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=35.07;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	72981499	rs10091093	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr8	72981567	rs10091198	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr8	73150491	rs6989765	G	A	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=1.025;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:50,39:0.44:89
chr8	73150830	rs62518400	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	73156976	rs2017235	C	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr8	73848139	rs3735829	A	T	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr8	73849768	rs142525254	A	C	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:427,290:0.40:717
chr8	73921534	rs113373855	G	GGAGGTCGGGAGA	2885.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	73926095	rs55823436	T	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr8	73926236	rs2975841	T	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	73926443	rs55883331	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.13;ReadPosRankSum=-0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	73958150	rs35276863	T	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr8	73979824	.	C	CTATATATATATATA	50.19	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	73982161	rs2291219	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr8	73983988	rs5892392	T	TA	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.609;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.130;QD=6.15;ReadPosRankSum=-1.200;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:51,50:0.50:101
chr8	73993200	rs10087744	T	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr8	74005131	rs59331088	A	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:232,152:0.40:384
chr8	74005179	rs114228241	T	G	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-2.953;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:166,113:0.41:279
chr8	74153582	rs35071098	T	TTTC	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.32;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	74169087	rs111494397	TA	T	360.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.411;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr8	74169337	rs2546217	T	C	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	74171798	rs79654397	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr8	74203576	rs4394387	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	74204653	rs2070764	A	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:69,90:0.57:159
chr8	74233349	rs3830704	T	TA	2108.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr8	74334889	rs114263344	T	G	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.086;QD=8.46;ReadPosRankSum=-1.085;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:57,50:0.47:107
chr8	74334905	rs73318729	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr8	74335014	rs60338415	T	TAGAAAGAC	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr8	74440125	rs143916422	T	TCAGGAAAATTCAAATAATTTA	2233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=7.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=2.531;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:64,60:0.48:124
chr8	74463089	rs3088139	T	G	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.852;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr8	74463797	rs10112019	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr8	74473951	rs12546339	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr8	74527996	rs949493	C	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	74581290	rs11419133	A	AG	11657.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr8	74744721	rs7842946	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr8	74782696	rs34722969	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	74791162	rs34584592	G	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,94:0.45:208
chr8	74859123	rs55903314	T	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr8	74867927	rs72661848	C	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	74868374	rs72661849	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr8	74888494	rs2306486	C	T	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr8	74890961	rs62509309	A	G	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr8	74893880	rs7108	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.596;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr8	74917084	rs6472812	A	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	74917228	rs11466001	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr8	75227090	rs79004031	A	C	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,104:0.46:225
chr8	75262798	rs7828201	G	C	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:3,332:0.99:335
chr8	75262841	rs4321999	G	A	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	75272287	rs3780014	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	75273933	rs55894757	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	75274099	rs73345392	C	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr8	75274331	rs3832592	CAT	C	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	75275312	rs4463412	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	75275363	rs16938895	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.296;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr8	75614614	rs269198	C	A	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	75737770	rs36083765	C	CT	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.544;QD=3.97;ReadPosRankSum=-1.630;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr8	75737818	rs1991860	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr8	75924820	rs12115090	A	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr8	75926195	rs77552013	T	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr8	75927247	rs57706742	C	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr8	75929540	rs149998958	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.509;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr8	75932163	.	C	T	854.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr8	75944409	rs10714892	AT	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.539;QD=1.92;ReadPosRankSum=1.032;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr8	76452313	rs2943549	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	76452421	rs2943551	G	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	76459726	rs1800922	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	76465360	rs1805099	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr8	76465522	rs1800924	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	76465570	rs62515061	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=-1.150;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	76468139	rs2941468	C	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	76468282	rs1805098	G	A	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	76468309	rs61003427	GTT	G	174.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	76472485	rs2941472	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	76472560	rs2941473	A	T	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr8	76472735	rs1800950	T	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.238;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:60,60:0.50:120
chr8	76476396	rs1805100	G	A	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	76476457	rs2272669	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	77690380	rs12679822	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	77690563	rs16939357	T	C	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	77745635	rs2733733	G	A	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	77755152	rs2248913	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:109,127:0.54:236
chr8	77764073	rs28376707	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr8	77764207	rs28432935	G	A	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:357,327:0.48:684
chr8	77765865	rs2728455	C	T	2609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-1.325;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:219,139:0.39:358
chr8	77775350	rs78600602	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr8	77879154	rs73242058	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.679;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.415;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr8	77879257	rs7000529	T	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	77895682	rs112108739	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr8	77895865	rs10087163	A	G	8801.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr8	77896391	rs9298285	C	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:94,106:0.53:200
chr8	79598666	rs142222654	GTTTA	G,GTTTATTTA	4049.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=134;set=Intersection	GT:AF:DP	1/2:0.42,0.54:113
chr8	79598914	rs185437180	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	79601420	rs1872072	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=-1.534;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	79609917	rs370060109	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.77;ReadPosRankSum=-2.369;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr8	79610710	rs1054283	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr8	79629738	.	CA	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.844;QD=7.40;ReadPosRankSum=0.528;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	79645762	rs188091954	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	79659182	rs16906062	T	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr8	80577224	rs71756967	T	TA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.954;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr8	80678300	rs11448857	C	CA	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr8	80831393	.	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.436;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr8	80941997	rs10957952	T	C	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr8	80965039	rs3824267	T	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	80965070	rs3780010	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	80965739	rs2303446	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	81032301	.	A	T	21	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=1;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=21;QD=27.8856062736;SC=AAGTTAAAAGACAAGTGACAG;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=81032309;WS=81032291;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	81083598	rs201086010	AAAGCCCGAGTCC	A	6535.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:9,264:0.97:273
chr8	81426293	rs147305104	T	TA	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	81599336	rs61202091	G	A	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:125,142:0.53:267
chr8	81733727	rs3907424	C	A	3925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.940;QD=8.94;ReadPosRankSum=-1.465;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:232,207:0.47:439
chr8	81892766	rs2241972	G	A	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr8	81897200	rs7006101	C	T	4795.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:221,236:0.52:457
chr8	81905294	rs895270	G	A	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.367;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:125,110:0.47:235
chr8	81905314	rs2016459	A	C	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr8	81905397	rs2016465	A	G	8044.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=1.517;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:2,321:0.99:323
chr8	81905533	rs895267	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	82355621	rs6473276	A	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.783;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr8	82391183	rs112313579	T	TG	2525.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:153,95:0.38:248
chr8	82391874	rs2305319	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	82392849	rs8192688	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr8	82392918	rs60855359	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr8	82441532	rs3842190	T	TG	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr8	82441694	rs16909315	C	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:237,150:0.39:387
chr8	82443387	rs11985337	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.401;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr8	82583121	rs80087492	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr8	82590822	rs2932222	C	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	82590861	rs2991004	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	82591058	rs35029781	CA	C	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=16.57;ReadPosRankSum=0.396;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr8	82591292	rs74841350	A	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr8	82591625	rs149013718	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr8	82593864	rs147457857	ATAGT	A	2811.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr8	82598306	rs28725428	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr8	82606780	rs78567257	A	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.453;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:45,43:0.49:88
chr8	82607148	rs75101336	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr8	82621132	rs149732910	GC	G	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr8	82621181	rs78070409	G	A	85.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	82627395	rs58900840	A	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr8	82627435	rs146444702	TA	T	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	82629447	rs62512330	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr8	82713930	rs61516400	A	AGAGT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	82741576	rs34550849	C	CA	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	85097500	rs1898464	G	A	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	85686774	rs59162941	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:58,83:0.59:141
chr8	85774455	rs140710615	C	CTGT	1116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=0.416;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr8	85785413	rs3780004	A	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	85799827	rs10712255	TC	T	466.70	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr8	86027418	rs3736038	A	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr8	86048000	rs36102162	AT	A	554.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=19.81;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	86049731	rs190022501	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=2.512;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr8	86089787	rs12926	C	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.096;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr8	86114525	rs3217409	T	TTTA	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	86121311	rs3808538	G	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	86126827	rs112611553	C	CAACATT	3547.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=44.91;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	86134784	rs12550160	C	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	86135096	rs2132589	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr8	86135132	rs1021583	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr8	86158217	rs34150174	TTAAAC	T	1350.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr8	86158249	rs17740658	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr8	86163230	.	CTT	C	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=13.13;ReadPosRankSum=0.748;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:19,40:0.68:59
chr8	86171786	rs4739698	T	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr8	86171816	rs4739699	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	86180906	rs10712447	CT	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=10.647;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.750;QD=8.94;ReadPosRankSum=-0.167;SOR=4.209;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr8	86180944	rs2006767	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	86240981	rs74427886	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	86250709	rs4740049	T	C	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	86351175	rs78400724	G	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.619;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:50,43:0.46:93
chr8	86360458	rs11340759	TC	T	999.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr8	86388228	rs2307075	A	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	86389195	rs11780942	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr8	86389403	rs703	T	C	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:135,180:0.57:315
chr8	86392856	rs79078632	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr8	86392989	rs2228063	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:108,82:0.43:190
chr8	87060672	rs3802225	A	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr8	87060793	rs28483271	T	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,34:0.29:118
chr8	87060843	rs16876805	T	C	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr8	87076129	rs10090455	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr8	87076150	rs981711	C	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr8	87076651	rs16879427	T	C	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:102,104:0.50:206
chr8	87151606	rs2466326	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	87155094	rs1483779	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	87162515	rs10094744	G	A	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,111:0.44:250
chr8	87226700	rs9656982	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr8	87229948	rs4621787	T	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr8	87235150	rs2976190	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.820;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:126,77:0.38:203
chr8	87241797	rs11413051	A	AT	721.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:82,46:0.36:128
chr8	87241847	rs7814198	G	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:158,95:0.38:253
chr8	87414308	rs10106066	A	G	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:86,67:0.44:153
chr8	87439926	rs60177164	C	T	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:110,130:0.54:240
chr8	87442753	rs9656826	A	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=1.888;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr8	87452766	rs4961191	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	87453030	rs10092164	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	87455070	rs71275852	TA	T	122.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.985;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr8	87460361	rs7012745	T	A	96.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	87469962	rs7464360	G	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	87481034	rs28451965	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr8	87482324	rs6471352	C	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	87517606	rs114452116	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr8	87519315	rs6980476	T	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr8	87540872	rs10956871	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr8	87543280	rs72690455	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr8	87544940	rs367707767	ATG	A	33.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr8	87552426	rs16915389	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr8	87558846	rs41333046	G	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=0.492;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr8	87567031	rs2304790	G	A	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-1.815;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:41,50:0.55:91
chr8	87567193	rs2304789	C	T	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:106,115:0.52:221
chr8	87567305	rs3816240	A	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr8	87568644	rs2304787	T	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,72:0.53:135
chr8	87570665	rs1062850	A	C	3732.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:185,187:0.50:372
chr8	87570728	rs1062851	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chr8	87581682	rs10660354	T	TCA	3444.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	87581723	rs71275866	CAT	C	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=7.213;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.645;QD=5.34;ReadPosRankSum=-0.727;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr8	87588198	rs3735972	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr8	87588248	rs3735970	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr8	87588519	rs974279	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	87641271	rs34839859	C	T	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:202,209:0.51:411
chr8	87666251	rs4961206	T	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	87679098	rs3735967	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.20;ReadPosRankSum=0.105;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr8	87679303	rs6471482	A	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	87679463	rs3735966	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	87680112	rs7815125	T	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	87680282	rs16916632	C	T	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:151,150:0.50:301
chr8	87680406	.	GA	G	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.056;QD=6.02;ReadPosRankSum=-1.212;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:63,52:0.45:115
chr8	87683465	rs1441242	C	T	126.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	87751848	.	GTT	G,GTTT	722.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=7.401;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=1.068;SOR=0.124;set=HC	GT:AD:AF:DP	1/2:13,33,21:0.49,0.31:67
chr8	87751870	rs66881636	A	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr8	87755891	rs7812496	A	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr8	87878846	rs2453451	T	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr8	87951714	rs4644279	A	C	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	88249251	rs367726460	A	G	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=2.429;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:121,117:0.49:238
chr8	88249338	rs60556175	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr8	88440716	.	T	TA	728.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-1.337;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr8	88440717	rs34224018	T	TTTTA,TCTTTTTA	1400.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=48.30;SOR=1.942;set=HC	GT:AD:AF:DP	1/2:0,10,19:0.34,0.66:29
chr8	88622043	rs9694259	T	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.037;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:50,42:0.46:92
chr8	89068596	rs2616495	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	89081541	rs2664347	A	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.55;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	89081730	rs2616490	T	C	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:115,135:0.54:250
chr8	89081734	rs144762406	T	TA	3117.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:138,107:0.44:245
chr8	89087006	rs28991884	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:139,116:0.45:255
chr8	89339993	.	GCA	G	149.73	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	89340162	rs16892543	G	C	5056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.847;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.962;QD=9.72;ReadPosRankSum=-0.800;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:249,271:0.52:520
chr8	90770609	rs39499	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	90771415	rs58972679	A	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr8	90777510	rs431264	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr8	90781932	rs16900484	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr8	90781953	rs40377	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr8	90782226	rs28565967	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr8	90792127	rs39506	A	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	90792167	rs55945927	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.158;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr8	90796204	rs55881928	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.59;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr8	90796208	rs55697113	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr8	90798701	.	G	GA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.38;ReadPosRankSum=0.351;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr8	90798713	rs60327583	T	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	90798973	rs59924471	A	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	90798977	rs61162436	T	TC	602.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	90802491	rs16900617	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:159,131:0.45:290
chr8	90926472	rs28507172	T	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	90937198	rs35599414	G	C	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-2.911;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:202,118:0.37:320
chr8	90948012	rs13312973	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	90948315	.	CT	C	162.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=8.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=2.635;SOR=1.759;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	90955358	rs7840099	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr8	90955583	rs7823648	A	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr8	90955624	rs3736639	T	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr8	90958530	rs2308962	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr8	90967711	rs709816	A	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	90967862	rs1805786	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.59;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr8	90970862	rs1805818	G	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-0.140;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr8	90976799	rs13312891	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr8	90993150	rs769417	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	90993817	rs2308961	T	G	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	90995019	rs1063045	C	T	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:222,221:0.50:443
chr8	91013541	rs741779	C	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	91013568	rs55857165	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr8	91017745	rs1805806	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	91031433	rs1805879	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr8	91064036	rs1476590	G	C	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	91090553	rs78054626	G	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr8	91094086	rs7815279	A	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	91884534	rs7829663	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	91929652	rs34544744	GA	G	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.105;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	91940446	rs1002583	C	T	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:138,107:0.44:245
chr8	91953138	rs7018395	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr8	91963466	rs34782158	CT	C	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr8	91963472	rs71528761	T	G	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr8	91967658	rs2677572	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-1.375;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	91973099	rs2740780	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr8	91992746	rs2740774	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	92021036	rs2054805	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr8	92082753	rs3808378	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=0.752;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr8	92083230	rs28429767	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	92083424	rs11557571	A	G	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:191,155:0.45:346
chr8	92083592	rs5893159	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=8.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.576;SOR=2.910;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	92090573	rs11786324	G	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.361;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:42,30:0.42:72
chr8	92130316	rs55762572	A	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=0.550;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:58,66:0.53:124
chr8	92136728	rs11785003	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr8	92139254	rs12544236	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr8	92139423	rs115795833	C	T	3848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=2.291;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:239,202:0.46:441
chr8	92301249	rs4734009	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr8	92307978	rs10107822	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	92352887	rs7012287	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr8	92364100	rs10109254	T	C	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:118,183:0.61:301
chr8	92406021	rs16912805	C	T	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:114,98:0.46:212
chr8	92972780	rs2977676	G	A	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	93015447	.	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chr8	93088151	rs13252280	C	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.712;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:52,62:0.54:114
chr8	93107764	rs142369081	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr8	93328769	rs12114381	G	T	44.41	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.99;QD=22.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	93328798	.	GTA	G	48.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-0.000;QD=6.09;ReadPosRankSum=-1.930;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	93328801	.	GAAGT	G	48.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-0.000;QD=6.09;ReadPosRankSum=-1.930;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	93328829	.	GAGAAGAAGAAGA	G	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-2.288;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr8	93328993	rs138085384	CGAA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.551;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr8	93904087	rs3780016	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	94359032	rs12677732	A	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	94713419	rs77440656	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr8	94713827	rs7816955	G	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	94714338	rs16916128	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr8	94715965	rs6997642	C	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	94738830	rs16916159	C	T	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:117,110:0.48:227
chr8	94752754	rs3813853	G	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	94793073	rs116802062	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr8	94793779	rs61676319	A	G	63.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	94794620	rs3097427	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	94808165	rs3134031	A	G	8052.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr8	94928208	rs4236818	A	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr8	94929962	rs58971944	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr8	95143172	rs1051624	T	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:141,138:0.49:279
chr8	95143186	rs1051623	C	G	8230.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	95158259	rs2251734	G	A	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:185,117:0.39:302
chr8	95158382	rs1131830	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr8	95160949	rs151133817	GT	G	3490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=26.939;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.011;QD=24.93;ReadPosRankSum=1.210;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:44,96:0.69:140
chr8	95160958	rs76453018	T	G	3830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=30.619;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.010;QD=23.65;ReadPosRankSum=-0.269;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:46,116:0.72:162
chr8	95164230	rs149027046	C	T	3517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=2.650;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:199,185:0.48:384
chr8	95177932	rs73266249	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr8	95182986	rs2446866	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	95186295	rs2514813	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	95188850	rs2243518	T	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	95265112	rs58260930	C	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	95265210	rs17847127	A	G	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:117,145:0.55:262
chr8	95390921	rs716770	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	95412622	rs35868909	C	T	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:179,180:0.50:359
chr8	95419698	rs2291439	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,57:0.45:127
chr8	95470553	rs35973866	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr8	95470697	rs2919660	C	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	95470706	rs144773103	AATTTTCTGT	A	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	95479879	rs3099398	A	G	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr8	95507060	rs73274021	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr8	95507328	rs4366055	A	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr8	95521853	.	TAC	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.823;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:96,13:0.12:109
chr8	95524209	rs3099412	C	T	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr8	95541302	rs957448	A	G	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:241,190:0.44:431
chr8	95541371	rs957446	T	A	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:294,256:0.47:550
chr8	95550357	rs1866845	A	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr8	95559348	rs58408347	C	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr8	95565538	rs3133658	G	C	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:156,132:0.46:288
chr8	95651239	rs7824334	T	G	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:246,248:0.50:494
chr8	95651573	rs13268847	C	G	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:140,138:0.50:278
chr8	95673674	rs6471455	A	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	95673885	rs60616285	A	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=0.413;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr8	95674823	rs11404889	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.318;QD=3.28;ReadPosRankSum=-0.058;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr8	95677132	rs1426171	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr8	95718131	rs55760931	CTTT	C	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	95718210	rs77508375	A	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr8	95718314	rs11785	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	95732283	rs13267007	G	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr8	95738717	rs7816645	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	95746833	rs7815731	C	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	95750546	rs201512830	CA	C	437.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.129;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr8	95756488	rs114833919	T	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	95777555	rs7834433	A	G	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.866;QD=11.52;ReadPosRankSum=-0.028;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,48:0.59:82
chr8	95778987	rs75591076	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=-1.426;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	95780656	rs138998679	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-2.374;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr8	95793284	rs36116205	A	AT	105.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.722;QD=6.61;ReadPosRankSum=0.182;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	95793515	rs4398879	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	95800325	rs4428644	T	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.740;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	95853708	rs11996455	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr8	95877787	rs713113	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:220,155:0.41:375
chr8	95886551	rs10956928	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-1.128;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr8	95902819	rs368221608	AT	A	181.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.061;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:82,39:0.32:121
chr8	95902821	rs10109074	T	A	287.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.070;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:84,41:0.33:125
chr8	95906414	rs79948807	T	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr8	95906554	rs2466431	C	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	95952016	rs2123646	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	95993274	rs115694200	A	G	4625.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:221,240:0.52:461
chr8	96046094	rs2678823	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr8	96046368	rs74433297	A	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr8	96047806	rs34960210	T	TA,TAAA	1167.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.485;QD=19.79;ReadPosRankSum=2.520;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:6,23,30:0.39,0.51:59
chr8	96048769	rs75150241	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	96053782	rs79118993	GCT	G	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr8	96057950	rs73276487	T	C	175.89	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr8	96059218	rs60724818	A	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:105,86:0.45:191
chr8	96059283	rs61910718	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:113,91:0.45:204
chr8	96070181	rs2678832	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	96085317	rs4641029	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	96166188	rs7833074	A	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	96281182	.	T	C	686.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr8	96281552	rs7827211	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr8	97172406	rs75072306	A	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr8	97246884	rs117214996	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr8	97246909	rs139433147	T	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	97296205	.	G	GA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.334;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr8	97311830	rs73271885	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr8	97332661	rs3735987	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr8	97342536	rs2280263	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:113,98:0.46:211
chr8	97342582	rs7001397	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr8	97345590	rs3735986	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	97384315	rs2319815	A	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr8	97384408	rs2244423	C	T	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	97384625	rs34027129	A	AG	282.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	97398106	rs369856367	TTC	T	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-4.840;QD=1.61;ReadPosRankSum=0.680;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:312,63:0.17:375
chr8	97506373	rs880938	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	97614661	rs1042381	T	A	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:106,144:0.58:250
chr8	97797538	rs34088584	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr8	97847358	rs1864384	G	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr8	98041659	rs7840421	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.539;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:31,34:0.52:65
chr8	98155276	rs147450561	G	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=1.011;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:143,87:0.38:230
chr8	98289986	rs28669903	C	T	9980.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr8	98673139	rs35824023	G	GATA	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	98703495	rs149869061	AAAAC	A	370.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	98787738	rs149624654	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=28.08;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	98787994	rs2449510	A	G	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.25;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	98788033	rs2449509	G	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.56;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	98817559	rs112813626	T	TG	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.084;QD=9.56;ReadPosRankSum=0.483;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr8	98817766	rs16896225	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=0.170;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr8	98827425	rs149218999	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.718;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	98827531	rs7818775	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr8	98827636	rs7818662	C	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr8	98828215	rs3073521	A	ACTT	1841.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr8	98828529	rs2331656	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.553;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	98828532	rs2331657	C	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.648;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr8	98828550	rs138971125	TC	T	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr8	98831577	rs62524114	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.052;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	98863570	rs73274259	G	A	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:111,80:0.42:191
chr8	98943545	rs2290471	A	G	4359.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:176,215:0.55:391
chr8	98954012	rs2513845	T	C	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:89,99:0.53:188
chr8	98973560	rs62523561	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr8	98991223	rs1869608	A	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:181,129:0.42:310
chr8	99006736	rs11559202	C	T	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:224,158:0.41:382
chr8	99006748	rs11559201	C	T	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:239,161:0.40:400
chr8	99015737	rs150407167	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr8	99030280	rs2248014	T	C	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:172,122:0.41:294
chr8	99045454	rs6985709	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.993;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	99045978	rs2255464	A	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	99101380	rs61729708	A	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,104:0.53:195
chr8	99102105	rs11994440	A	G	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:175,134:0.43:309
chr8	99114968	.	A	G	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=0.774;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr8	99114968	.	ACA	GCC	794	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=19;NR=6;PP=794;QD=33.8987149945;SC=CATCAAACTCACACTGTCATC;SbPval=0.6;Source=Platypus;TC=40;TCF=30;TCR=10;TR=25;WE=99114978;WS=99114958;set=Platypus	GT:AD:AF:DP	0/1:15,25:0.62:40
chr8	99114970	rs8218	A	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=1.604;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr8	99118654	rs2242196	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	99120794	rs77539382	T	TC	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	99121035	rs34451943	GC	G	1477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=0.958;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:35,41:0.54:76
chr8	99121038	rs34397714	A	AG	1477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.24;ReadPosRankSum=1.912;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:35,38:0.52:73
chr8	99121075	rs35654897	TAA	T,TAAA	262.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.559;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=0.399;SOR=2.985;set=HC	GT:AD:AF:DP	1/2:2,8,6:0.50,0.38:16
chr8	99140544	rs2447508	G	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	99146809	rs34680723	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.493;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:68,55:0.45:123
chr8	99148699	rs78782053	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr8	99152126	rs28695425	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.80;ReadPosRankSum=-0.556;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	99152130	rs28668499	G	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.36;ReadPosRankSum=0.260;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	99152170	rs28549107	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr8	99152183	rs28645170	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr8	99152269	rs111460631	AT	A	2557.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,86:0.49:175
chr8	99153088	rs17184326	A	C	3187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.951;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:162,166:0.51:328
chr8	99153126	rs28575522	C	T	2455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=2.065;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:146,129:0.47:275
chr8	99153160	rs17184361	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr8	99158778	rs17184704	A	G	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:116,146:0.56:262
chr8	99160957	rs9969536	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	99162634	rs7000738	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	99162888	rs4735530	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	99205111	rs3735885	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	99205612	rs3735887	C	T	7051.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr8	99208065	rs13264255	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	99208190	rs3779721	A	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.922;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr8	99217298	rs116299691	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr8	99224534	rs1542289	C	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	99735209	rs201288237	C	CA	470.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr8	100026275	rs12547849	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr8	100127839	rs138515744	C	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	100133706	rs7460625	T	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr8	100160282	rs199769640	ATT	A	535.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.948;QD=12.76;ReadPosRankSum=-1.562;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr8	100287579	rs7840337	G	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr8	100443679	rs3103703	A	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	100479917	rs3134156	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr8	100548975	rs16897440	C	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:165,135:0.45:300
chr8	100865603	rs140608829	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr8	100865682	rs61753726	G	T	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:74,78:0.51:152
chr8	100871751	rs10710929	CT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.668;QD=1.26;ReadPosRankSum=-0.472;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr8	100904098	rs139479312	C	T	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.137;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:161,102:0.39:263
chr8	100975002	rs6468700	A	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	100994389	rs6468704	C	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	100994398	.	TA	T	66.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	100999637	rs28758904	G	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr8	101020548	rs3101322	C	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-1.687;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr8	101050996	rs140048745	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr8	101051024	rs930965	C	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr8	101053980	rs922207	C	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:117,118:0.50:235
chr8	101059662	rs2980542	G	A	2378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=1.801;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:168,124:0.42:292
chr8	101105729	rs147879096	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.548;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr8	101117734	rs1471293	A	G	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr8	101137897	rs2453626	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	101138096	rs1460933	T	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	101153024	rs1460934	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:222,148:0.40:370
chr8	101174426	rs16898015	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr8	101203662	rs138503542	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr8	101203737	rs3802149	T	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr8	101206391	rs17335870	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:80,30:0.27:110
chr8	101206459	rs56246127	A	AGAC	1594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.430;QD=11.56;ReadPosRankSum=1.152;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:92,46:0.33:138
chr8	101206531	rs17335911	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr8	101225241	.	CCCGCGGCCT	C,CCCGCGGCCTCCGCGGCCT	3379.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=95;set=Intersection	GT:AF:DP	1/2:0.57,0.43:83
chr8	101225838	rs2514682	C	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	101225894	rs62532740	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr8	101226010	rs114109130	T	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr8	101232421	rs141450399	TCAGTACTG	T	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	101232701	rs2919471	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	101252680	rs6511	T	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	101280911	.	TA	T	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=25.611;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.722;QD=5.23;ReadPosRankSum=1.381;SOR=3.585;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	101281238	rs7014862	C	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	101522891	.	TA	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=2.639;QD=1.90;ReadPosRankSum=0.691;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr8	101540234	rs374414134	A	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.911;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-1.284;QD=9.14;ReadPosRankSum=-0.091;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr8	101542205	rs2469652	G	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	101586133	rs2022923	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr8	101608919	rs2248609	T	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr8	101609043	rs138557363	GC	G	1355.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr8	101620541	rs2469668	T	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr8	101620557	rs11418392	A	AC	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr8	101625479	rs1078186	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr8	101661603	rs7016136	T	G	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:232,200:0.46:432
chr8	101661634	rs12681977	C	T	4359.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:234,223:0.49:457
chr8	101669793	rs3016888	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	101718932	rs62513920	C	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=8.788;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-3.661;QD=1.07;ReadPosRankSum=-0.424;SOR=2.051;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr8	101718965	rs62513921	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=10.781;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-4.380;QD=2.88;ReadPosRankSum=1.720;SOR=1.976;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr8	101718968	rs62513922	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=12.685;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-4.267;QD=2.90;ReadPosRankSum=1.086;SOR=2.076;set=HC	GT:AD:AF:DP	0/1:128,21:0.14:149
chr8	101721705	rs201017624	G	T	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-12.832;QD=1.70;ReadPosRankSum=-9.221;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:377,46:0.11:423
chr8	101721709	rs146200489	T	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-12.502;QD=1.76;ReadPosRankSum=-8.562;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:383,49:0.11:432
chr8	101721727	rs139094790	G	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-11.815;QD=1.67;ReadPosRankSum=-7.657;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:432,96:0.18:528
chr8	101721756	rs57799615	A	C	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-14.734;QD=2.51;ReadPosRankSum=4.412;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:478,133:0.22:611
chr8	101721812	rs200409148	G	A	4641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-10.499;QD=8.07;ReadPosRankSum=-0.579;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:430,145:0.25:575
chr8	101721817	rs201076736	T	C	4594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-9.862;QD=8.02;ReadPosRankSum=-1.472;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:433,140:0.24:573
chr8	101721839	rs202074479	C	A	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-9.186;QD=1.65;ReadPosRankSum=-1.499;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:379,85:0.18:464
chr8	101721870	rs146609644	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-10.839;QD=0.42;ReadPosRankSum=-2.629;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:347,53:0.13:400
chr8	101933023	.	TGGG	T	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.02;ReadPosRankSum=1.418;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr8	101933045	rs181751099	T	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=2.733;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr8	101937370	rs964919	A	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.03;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	101937370	.	AAACA	TAACA,TAACG	186	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.55;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=24;MQ=60.0;NF=9,6;NR=13,9;PP=53,186;QD=3.98960057033;SC=TATAAAACTTAAACACCCAGT;SbPval=0.59;Source=Platypus;TC=22;TCF=9;TCR=13;TR=22,15;WE=101937382;WS=101937360;set=Platypus	GT:AF:DP	0/1:1.00:22
chr8	101937374	rs3105460	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.250;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr8	101937455	rs964917	T	C	96.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	102504974	rs515622	C	G	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	102555060	rs470801	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr8	102585806	rs548564	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	102644076	rs148523911	C	T	135.03	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr8	102649139	rs34550163	G	A	3694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.235;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:204,191:0.48:395
chr8	102649168	rs142083150	A	G	3385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=1.095;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:193,178:0.48:371
chr8	102649191	rs115164415	A	G	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:167,155:0.48:322
chr8	102649222	rs191641315	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,107:0.50:214
chr8	102649275	rs146684067	C	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr8	102656413	rs34213258	A	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr8	102676566	rs3029400	T	TGAA	840.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr8	102678798	rs10093032	C	T	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:235,254:0.52:489
chr8	102678972	rs3735713	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr8	102701456	rs375965103	CA	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.015;QD=1.35;ReadPosRankSum=1.322;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:155,60:0.28:215
chr8	103137693	rs487571	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr8	103220351	rs1265117	A	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	103244221	rs2015704	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	103247134	rs2853229	A	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=25.02;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	103251034	rs72554092	A	C	7436.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:371,376:0.50:747
chr8	103276851	rs62524308	A	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr8	103279077	rs139974948	GAC	G	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.16;ReadPosRankSum=-2.065;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	103283313	rs3018508	C	T	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr8	103284675	rs10505022	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	103299869	rs144621399	G	GT	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr8	103299879	rs72681171	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr8	103307754	rs142131013	C	T	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr8	103339881	rs2445948	A	C	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	103372743	rs6468823	G	A	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	103541502	rs66648401	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr8	103563907	rs3808357	G	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr8	103572551	rs57773710	T	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	103572992	rs3018444	C	G	33504.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.11;QD=45.09;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr8	103573001	rs3018445	C	G	21974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=-10.443;QD=24.31;ReadPosRankSum=-2.245;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:337,567:0.63:904
chr8	103573006	rs2916569	G	A	21813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=896;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=-13.444;QD=24.48;ReadPosRankSum=0.363;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:332,559:0.63:891
chr8	103573010	.	CTGCAACCCCTGCAGCCCCTGCAACCCG	C	8454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DP=991;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=11.759;QD=9.22;ReadPosRankSum=4.518;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:663,254:0.28:917
chr8	103819681	rs10108226	G	A	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	103841801	rs79246673	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	103852064	rs71705217	TAAAA	T	1197.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr8	104054526	rs3779908	A	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.596;QD=3.08;ReadPosRankSum=-0.216;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	104075165	rs375336829	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=2.842;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr8	104075341	.	G	GT	282.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr8	104077147	rs75246352	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.818;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr8	104081085	rs9992	G	C	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	104145625	rs2515189	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr8	104166746	rs57787067	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr8	104166902	rs35605502	G	GC	4031.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	104240454	rs111677857	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	104312341	rs3736047	A	G	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	104319947	rs11312808	GT	G	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr8	104331088	rs3104026	G	C	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	104337096	rs3808554	A	G	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:4,325:0.99:329
chr8	104337367	rs3808553	A	C	10915.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr8	104343686	rs1053917	G	A	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr8	104343822	rs2934725	A	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	104390224	rs2687364	T	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	104394744	rs3098233	T	C	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	104709594	rs1176674	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr8	104934028	rs6468897	G	A	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	104987711	rs34236346	A	T	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	105027805	rs114378366	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	105053356	rs10086112	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	105053383	rs10086223	C	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	105106649	rs71297252	G	GACTT	2166.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	105106882	rs9969594	T	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	105152787	rs73299456	T	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr8	105261161	rs3072636	A	AT	150.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.085;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr8	105263751	rs2252152	T	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	105263979	rs10461	C	T	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.62;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	105264087	rs34085789	C	CA,CAA	1003.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.065;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.592;QD=15.68;ReadPosRankSum=1.347;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:10,15,39:0.23,0.61:64
chr8	105360816	rs116034004	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	105367096	rs2458431	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	105393687	rs2253336	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	105440462	rs2246815	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr8	105459793	rs7821992	C	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	105463690	rs2669429	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	105510411	.	C	T	170.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr8	105839840	rs190439692	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	105845531	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=-1.981;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	105845706	rs145596017	T	TTTTTTTTC	2679.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	105845742	rs1380689	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	105907461	rs2290865	G	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	105907786	rs3214884	GT	G	1058.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr8	106003701	rs16872136	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr8	106003949	rs16872138	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr8	106331094	.	G	GGCGGGA,GGCGGCGGGA	2501.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.53;QD=49.05;SOR=0.900;set=HC	GT:AD:AF:DP	1/2:0,8,43:0.16,0.84:51
chr8	106456683	rs11990012	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	106573578	rs3735953	C	T	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	106628833	rs139841122	ATAAGTC	A	1967.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,55:0.38:145
chr8	106628965	rs1817023	T	G	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=1.979;QD=12.47;ReadPosRankSum=1.723;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	106646683	rs4734883	A	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	106807951	rs140881764	GAACTT	G	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	106808005	rs28633433	A	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.573;QD=4.75;ReadPosRankSum=0.243;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr8	106811255	rs16873705	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	106813518	rs11993776	C	G	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	106813672	rs920628	A	G	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr8	106814279	rs28374544	A	G	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr8	106815474	rs16873741	C	T	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,262:0.99:264
chr8	106815517	rs11995760	C	T	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr8	106815679	rs16873744	A	G	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	107277717	rs2938306	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	107371924	rs2022982	C	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	107630536	rs3134136	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr8	107670141	rs2282510	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr8	107695648	rs3102433	C	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	107704940	.	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.896;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr8	107754583	rs1784468	T	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	107782335	rs11996457	G	A	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr8	107782395	rs11996466	G	A	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	108264273	rs10088493	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr8	108297122	rs28471992	C	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,38:0.31:124
chr8	108315277	rs4472483	T	G	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	108315599	rs149628829	C	CA	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.777;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr8	108335042	rs7009753	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	109009081	rs1369068	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	109215368	rs630492	T	C	7660.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr8	109229529	rs11358208	TA	T	88.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	109240695	rs596747	T	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.09;ReadPosRankSum=-0.589;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	109245991	rs612744	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	109246032	rs587340	C	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	109246055	rs145581575	G	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	109254262	rs615233	C	T	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	109254475	rs13279663	C	T	5289.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:229,263:0.53:492
chr8	109254677	rs627392	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	109260776	rs4735053	A	G	35149.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=1369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-1.966;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:2,1354:1.00:1356
chr8	109260879	.	A	G	4985.77	.	AC=1;AF=0.500;AN=2;DP=886;set=Intersection	GT:AD:AF:DP	0/1:583,292:0.33:875
chr8	109260999	rs116197173	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:78,54:0.41:132
chr8	109455802	rs3737501	G	A	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	109455863	rs3737502	C	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:116,144:0.55:260
chr8	109462791	rs4540386	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	109468230	rs10646253	T	TAGAA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	109488937	rs1871685	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	109491237	rs114647341	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=0.903;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr8	109491399	rs2252767	A	T	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	109498656	rs10111934	T	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	110293184	rs3830706	TA	T	223.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.64;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	110301944	rs2980616	A	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	110301951	rs2980617	C	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	110302047	rs2980619	T	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr8	110302250	rs112730275	A	G	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	110334770	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-2.674;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	110348249	rs2980571	A	T	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:50,78:0.61:128
chr8	110355501	.	CT	C	37	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5040;HP=8;HapScore=2;MGOF=0;MMLQ=25;MQ=60.0;NF=3;NR=0;PP=37;QD=18.0;SC=ATAACTTTACCTTTTTTTTAA;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=3;WE=110355509;WS=110355491;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr8	110355833	.	GT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.93;ReadPosRankSum=1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr8	110394853	rs111568666	CT	C	1090.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr8	110406671	rs73309421	T	A	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.52;ReadPosRankSum=0.012;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr8	110406677	rs73309424	T	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=1.308;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:31,35:0.53:66
chr8	110406847	rs73309426	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr8	110412519	rs1379369	G	A	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr8	110413824	rs2061294	C	T	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	110416813	rs1457286	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	110425594	rs4604408	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	110437384	rs4735133	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	110437443	rs16879534	T	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.829;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:39,37:0.49:76
chr8	110441582	rs73307391	A	G	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.778;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:117,98:0.46:215
chr8	110445576	rs147835718	A	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr8	110448635	rs10093885	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr8	110448873	rs59237049	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	110453442	rs2168677	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.27;ReadPosRankSum=-0.522;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	110455321	rs1673408	C	A	5120.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:235,259:0.52:494
chr8	110456917	rs73700891	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:93,96:0.51:189
chr8	110460355	.	C	CT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.444;QD=2.49;ReadPosRankSum=0.209;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr8	110460488	rs1673407	G	T	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr8	110461518	rs1673405	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	110473907	rs1026439	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	110476776	rs77310972	G	A	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:139,111:0.44:250
chr8	110492191	rs56162009	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr8	110495303	rs76072933	T	C	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,114:0.47:243
chr8	110509300	rs57909958	A	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr8	110510993	rs9774677	C	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:168,113:0.40:281
chr8	110516653	rs73700608	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr8	110519814	rs1783153	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr8	110527556	rs55932317	A	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr8	110535444	.	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.274;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr8	110569827	rs2844231	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	110570060	rs2844232	A	G	6950.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	110575806	.	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.725;QD=10.07;ReadPosRankSum=-0.492;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr8	110590022	rs114725584	T	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,65:0.44:149
chr8	110598256	rs77164737	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr8	110620037	rs9297430	T	TCACA,TCACACA	651.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	0/1:0.73:30
chr8	110631415	rs59238932	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	110656272	rs7817360	C	T	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.989;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:56,57:0.50:113
chr8	110656657	rs56888322	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr8	110656746	rs59295888	TC	T	10108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.960;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:354,330:0.48:684
chr8	110656773	rs11774663	T	C	8823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.864;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:465,456:0.50:921
chr8	110657322	rs113779271	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.288;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr8	110657355	rs7011702	T	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.437;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:50,41:0.45:91
chr8	110657514	rs3108849	G	A	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr8	110657643	rs10106169	C	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr8	110703601	rs113023846	G	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:156,134:0.46:290
chr8	110984472	rs746596	G	A	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	113241088	rs1592624	T	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	113243995	rs10095093	C	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	113254070	rs371891542	TGC	T	111.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.473;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr8	113254071	.	G	GCACA	160.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-1.690;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr8	113254073	rs1007815	G	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-1.869;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr8	113254087	rs28698529	G	A	849.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.567;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.41;ReadPosRankSum=-1.416;SOR=0.504;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr8	113259132	rs1895014	A	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	113266343	rs7830950	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	113267709	rs7006723	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	113299275	rs10505181	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:118,116:0.50:234
chr8	113308243	rs4876462	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr8	113323089	rs10505180	T	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr8	113323471	rs17637578	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.497;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr8	113326623	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr8	113347769	rs62514406	A	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr8	113363350	rs7003308	T	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.16;ReadPosRankSum=-0.605;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	113363511	rs7003500	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-1.339;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr8	113420495	rs35988509	TG	T	2324.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	113516209	rs10955625	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,60:0.83:72
chr8	113529553	rs67362344	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr8	113585953	rs190896883	T	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	113599196	rs7463547	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	113599207	rs7460155	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	113655596	rs10505169	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	113655643	rs112584207	A	AC	2101.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	113655644	rs55980973	A	T	2110.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	113655752	rs10505168	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	113657602	rs7012820	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	113662299	rs6992564	T	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	113697567	rs7839990	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	113842039	rs10106945	G	A	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	113842114	rs57982384	GCACACACACA	G,GCA	368.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/2:0.50,0.50:16
chr8	113960033	rs61759498	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr8	113966776	rs113597384	T	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.000;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	114111250	rs2030506	G	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	114186003	rs2219898	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr8	114388945	rs17609383	G	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:181,99:0.35:280
chr8	114612543	rs4242557	A	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:166,102:0.38:268
chr8	116599199	rs2293889	T	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	116631278	rs2737218	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	116632409	rs10589819	GAA	G	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;QD=26.84;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	116635688	rs2737219	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	116635942	rs2721939	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	117749535	rs11284390	GA	G	1246.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.071;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-1.589;SOR=0.112;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr8	117768128	rs28649280	G	A	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	117782385	rs4514005	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	117783975	rs16888728	C	T	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.80;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	117783992	rs113693140	GCTT	G	939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.096;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr8	117859708	rs114862132	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr8	117861000	rs56668650	T	TAA	153.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.24;ReadPosRankSum=1.534;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr8	117861041	rs3020135	T	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	117864447	rs200955375	TGAA	T	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=-0.564;SOR=0.053;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr8	117864753	rs10093705	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,61:0.59:103
chr8	117864952	.	T	TA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.607;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr8	117864992	rs115102885	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=1.489;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	117867202	rs2921788	T	C	114.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.16;ReadPosRankSum=-0.431;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	117868531	.	T	TAA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.106;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr8	117875557	rs2921783	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:7,104:0.94:111
chr8	117879103	.	C	CTA	117	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=4;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=117;QD=50.6666666667;SC=AATATGAAAACTATAAAATGC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=3;WE=117879116;WS=117879093;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr8	117879107	rs201734211	A	AT	187.87	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	117879108	.	A	T	51	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=3;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=51;QD=28.5904041824;SC=GAAAACTATAAAATGCTTGAG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=117879116;WS=117879093;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	117879108	.	A	AT	187.87	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	117887117	.	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=28.529;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-4.105;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:140,29:0.17:169
chr8	117887121	.	G	GCCC	2340	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=8;HapScore=1;MGOF=93;MMLQ=20;MQ=58.85;NF=1;NR=114;PP=2340;QD=20.4956521739;SC=GCCAGCCCAAGCCCCCCCCTC;SbPval=0.94;Source=Platypus;TC=154;TCF=4;TCR=150;TR=115;WE=117887140;WS=117887111;set=Platypus	GT:AD:AF:DP	0/1:39,115:0.75:154
chr8	117887129	.	CT	C	2980	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=7;HapScore=1;MGOF=93;MMLQ=27;MQ=59.08;NF=1;NR=114;PP=2980;QD=20;SC=AAGCCCCCCCCTCCCCCCAGA;SbPval=0.79;Source=Platypus;TC=211;TCF=3;TCR=208;TR=115;WE=117887140;WS=117887111;set=Platypus	GT:AD:AF:DP	1/1:96,115:0.55:211
chr8	117887130	rs6996153	T	C	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=38.58;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	117887132	.	C	CCA	2972	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=5;HapScore=1;MGOF=93;MMLQ=27;MQ=59.06;NF=1;NR=114;PP=2972;QD=20;SC=CCCCCCCCTCCCCCCAGAAGG;SbPval=0.8;Source=Platypus;TC=208;TCF=3;TCR=205;TR=115;WE=117887140;WS=117887111;set=Platypus	GT:AD:AF:DP	1/0:93,115:0.55:208
chr8	117887132	rs16889197	C	A,CA	2749.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=13.925;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.92;MQRankSum=0.000;QD=28.35;ReadPosRankSum=1.095;SOR=4.804;set=HC	GT:AD:AF:DP	1/2:7,19,71:0.20,0.73:97
chr8	117887525	rs10094803	A	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	117950768	rs16889283	G	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	118165149	rs6469675	A	G	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	118169759	rs6996470	A	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	118533312	rs11990107	A	G	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,153:0.54:284
chr8	118533382	rs7015216	T	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr8	118533394	.	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr8	118533460	rs184720036	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr8	118541057	rs149544434	T	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,47:0.39:120
chr8	118541121	rs182836350	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr8	118819578	rs7837891	C	T	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:237,239:0.50:476
chr8	118825354	rs4382503	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr8	118830820	rs10955837	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr8	118842342	rs17503384	A	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=2.334;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:53,44:0.45:97
chr8	118847782	rs11546829	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr8	119122245	rs112373962	AT	A	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr8	119391791	rs5020517	T	C	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:306,264:0.46:570
chr8	119937050	rs11573941	C	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,75:0.50:150
chr8	119941173	rs3134046	A	G	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	119942830	rs6469787	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr8	119942997	rs11573912	TCTC	T	2169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.777;QD=12.69;ReadPosRankSum=-1.777;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:109,62:0.36:171
chr8	119945546	rs10505344	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.444;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:47,30:0.39:77
chr8	119964052	rs2073618	G	C	11920.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr8	119964283	rs2073617	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	120114645	rs73327239	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.310;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr8	120118492	rs144190039	TC	T	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr8	120220775	rs71302978	CG	C	7194.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=33.62;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	120233968	rs2303398	G	A	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:186,156:0.46:342
chr8	120255610	rs3739419	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr8	120255790	rs115566208	A	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:117,108:0.48:225
chr8	120429024	rs2279112	G	A	19029.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:1,719:1.00:720
chr8	120429282	rs7834596	G	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,79:0.47:169
chr8	120569748	rs111247972	G	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr8	120569877	rs2305129	T	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=1.108;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:52,46:0.47:98
chr8	120577030	rs3816330	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr8	120583148	rs2305125	G	A	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-1.587;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr8	120584680	rs6987751	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr8	120594802	rs4871364	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:132,115:0.47:247
chr8	120594958	rs55774238	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.18;ReadPosRankSum=0.210;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	120596023	rs10283100	A	G	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	120602908	rs935359	C	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.01;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	120602908	.	CTAAAAC	TTAAAAC,TTAAAAT	259	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=27;MQ=60.0;NF=19,10;NR=23,14;PP=170,259;QD=4.87550506065;SC=TCAGGCAAGACTAAAACGAAA;SbPval=0.55;Source=Platypus;TC=42;TCF=19;TCR=23;TR=42,24;WE=120602922;WS=120602898;set=Platypus	GT:AF:DP	0/1:1.00:42
chr8	120602914	rs935360	C	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.150;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:50,43:0.46:93
chr8	120613747	rs2289888	C	T	3933.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:219,202:0.48:421
chr8	120613822	rs2289889	C	T	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:147,153:0.51:300
chr8	120631657	rs5894488	CA	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.625;QD=11.09;ReadPosRankSum=0.474;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr8	120744349	rs956748	T	C	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:163,127:0.44:290
chr8	120754645	rs4871569	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	120773124	rs10096846	A	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	120790304	rs1509348	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	120790378	rs35033415	G	GA	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	120793296	rs7002501	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	120793332	rs28619538	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.754;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	120795607	rs13268676	G	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	120801805	rs6469846	C	T	11053.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:2,434:1.00:436
chr8	120803637	rs9297605	C	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	120803654	rs11996390	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr8	120814020	rs7813438	A	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	120816010	rs4871629	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	120818709	rs71571631	CTT	C	417.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.57;ReadPosRankSum=1.383;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr8	120818715	rs140154778	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.727;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	120843775	rs7828086	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	120844782	rs17818842	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr8	120847078	rs1055133	C	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	120847123	rs1055131	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	120847188	rs1055130	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	120854223	rs78342094	A	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr8	120856021	.	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.086;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr8	120862767	rs112349158	T	TA	985.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=35.20;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	120865533	rs113328525	CTCTAGGCTTGCAGAACTTAGAAT	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr8	120867693	rs55889147	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr8	120886370	rs7840728	T	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	120940652	rs16893299	C	T	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr8	120940867	rs28461628	G	A	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.92;SOR=1.992;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	120940867	.	GATCTTTT	AATCTTTC,AATCTTTT	778	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.08;NF=9,18;NR=24,60;PP=454,778;QD=15.3778143898;SC=GGAAGGACTAGATCTTTTCAT;SbPval=0.37;Source=Platypus;TC=78;TCF=18;TCR=60;TR=33,78;WE=120940882;WS=120940857;set=Platypus	GT:AF:DP	0/1:0.42:78
chr8	120940874	rs62528677	T	C	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.010;QD=10.58;ReadPosRankSum=-1.310;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:51,52:0.50:103
chr8	120941953	rs7007554	G	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	121013706	.	C	G	100.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr8	121013744	rs11395630	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.561;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:61,13:0.18:74
chr8	121013770	rs2271900	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr8	121061754	rs16893464	T	A	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:183,140:0.43:323
chr8	121209041	rs61729463	G	C	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=1.038;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:184,123:0.40:307
chr8	121210069	rs2305598	T	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,99:0.44:227
chr8	121210250	rs2305599	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	121211847	rs2326483	C	T	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr8	121215991	rs2305600	T	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr8	121220395	rs3765062	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	121228679	rs4870723	A	C	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:256,256:0.50:512
chr8	121240812	rs2305602	G	A	56.85	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	121256150	rs2305603	T	C	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:86,108:0.56:194
chr8	121259922	rs61738288	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:163,121:0.43:284
chr8	121260020	rs116034542	T	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr8	121262775	rs2305607	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr8	121267617	rs993823	C	T	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	121267729	rs78572620	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-0.497;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	121282371	rs116570378	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:161,102:0.39:263
chr8	121290186	rs73329016	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr8	121290573	rs2305609	T	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	121290834	rs60745201	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr8	121292407	rs1869831	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	121293331	rs1563388	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	121296045	rs16893819	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr8	121309862	rs2219241	A	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	121313086	rs73329067	T	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,64:0.46:138
chr8	121322163	rs144654632	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr8	121326122	rs3217653	CAG	C	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr8	121326427	rs10505379	G	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	121327608	.	TAAA	T	98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.253;QD=14.00;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	121327673	rs7844334	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr8	121328383	rs78746650	A	AT	618.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr8	121353651	rs1563391	A	G	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:195,130:0.40:325
chr8	121353692	rs1563392	A	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:170,101:0.37:271
chr8	121354505	rs63246862	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.574;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr8	121354505	.	GG	AA	75	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=75;QD=42.8226249541;SC=CTGTTGCTAGGGGCCAAAGAT;SbPval=1.0;Source=Platypus;TC=18;TCF=14;TCR=4;TR=3;WE=121354514;WS=121354495;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr8	121354506	rs3816523	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.312;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr8	121354851	rs2290523	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	121379538	rs139078450	C	T	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:75,113:0.60:188
chr8	121383048	rs4463470	T	C	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	121383082	rs6469922	A	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.02;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	121383082	.	AA	TA,TT	144	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=6;HapScore=3;MGOF=21;MMLQ=27;MQ=60.0;NF=8,5;NR=17,8;PP=144,110;QD=7.15084850189;SC=GAGATTTTTTAAAAAAATTTC;SbPval=0.57;Source=Platypus;TC=25;TCF=8;TCR=17;TR=25,13;WE=121383091;WS=121383072;set=Platypus	GT:AF:DP	0/1:1.00:25
chr8	121383083	rs11991928	A	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.867;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	121383385	rs190530400	C	T	3898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=-0.584;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:177,195:0.52:372
chr8	121437755	rs373015126	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	121444249	rs80257021	C	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr8	121455558	rs5894521	G	GA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.203;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:75,39:0.34:114
chr8	121467738	rs78433859	A	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr8	121468789	rs189854594	A	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=1.698;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	121471361	rs6984090	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	121483196	rs13248998	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	121509652	rs146660838	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr8	121509825	rs35918868	C	CTTT	119	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	121514822	rs144769530	C	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr8	121518868	.	CTT	C	417.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.99;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:8,14:0.64:22
chr8	121518958	rs78773213	A	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:81,66:0.45:147
chr8	121530061	rs13258768	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.797;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr8	121530190	rs13258848	A	G	4078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.662;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:227,212:0.48:439
chr8	121530384	rs34340354	CTT	C	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	121531154	rs13269481	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr8	121535050	rs12681110	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	121561201	rs138861807	GGA	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.036;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr8	121583488	rs72680558	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr8	121583533	rs72680559	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:103,70:0.40:173
chr8	121583562	rs72680560	C	T	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:146,104:0.42:250
chr8	121583603	rs72680561	G	A	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:152,135:0.47:287
chr8	121583635	rs73707305	G	T	4133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=-0.913;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:120,108:0.47:228
chr8	121583719	rs200630168	G	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=10.150;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-0.808;QD=19.19;ReadPosRankSum=0.903;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr8	121583725	rs201354068	T	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.792;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-1.075;QD=21.96;ReadPosRankSum=-0.587;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr8	121706032	rs374892259	G	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr8	121824063	rs190526297	C	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	123966159	rs3802265	G	C	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:106,109:0.51:215
chr8	124027628	rs7159	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	124031339	rs114484114	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:102,79:0.44:181
chr8	124035034	rs16897891	G	A	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:117,129:0.52:246
chr8	124042733	rs2891672	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	124096315	rs4871346	C	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	124096721	rs4870845	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	124114333	rs10956116	G	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr8	124114560	rs10956117	T	C	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	124114583	.	A	AGTGGCATTTGCC	2954	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=4;MGOF=20;MMLQ=27;MQ=63.25;NF=3;NR=22;PP=2954;QD=20;SC=GTGCATTTGGAGTGGCGTTTG;SbPval=0.18;Source=Platypus;TC=52;TCF=3;TCR=49;TR=25;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/0:27,25:0.48:52
chr8	124114588	.	C	CATTT	2491.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.411;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=63.72;MQRankSum=8.496;QD=17.30;ReadPosRankSum=-0.969;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:69,75:0.52:144
chr8	124114589	.	G	A	1018	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=4;MGOF=20;MMLQ=27;MQ=60.0;NF=4;NR=12;PP=1018;QD=65.7982007842;SC=TTGGAGTGGCGTTTGCCACCT;SbPval=0.71;Source=Platypus;TC=51;TCF=15;TCR=36;TR=16;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/0:35,16:0.31:51
chr8	124114589	.	G	GCCGTGGCA	2491.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.872;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=63.63;MQRankSum=8.382;QD=17.55;ReadPosRankSum=-2.176;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:69,73:0.51:142
chr8	124114598	rs146629815	C	CT	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr8	124121798	rs16897969	A	G	7130.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	124138666	rs192890746	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	124138855	rs16898012	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:232,193:0.45:425
chr8	124140805	rs148339992	C	CATA	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr8	124142489	rs2272724	T	C	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:176,146:0.45:322
chr8	124154697	rs10101626	G	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr8	124156863	rs184844315	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr8	124194181	rs11780863	T	C	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:156,111:0.42:267
chr8	124194740	rs11988157	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr8	124195017	rs28694222	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr8	124195034	rs16898097	G	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr8	124338310	.	TATG	T	925.73	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr8	124358456	.	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr8	124359749	rs9297666	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	124368478	rs111326662	T	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr8	124382158	rs374184884	TTCA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=2.462;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:84,8:0.09:92
chr8	124440174	rs6999234	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	124440336	rs10628888	A	AAG,AG	1686.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/1:1.00:45
chr8	124442119	rs71310685	C	CA	122.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=0.000;QD=9.42;ReadPosRankSum=1.102;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr8	124442187	rs13278992	A	G	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr8	124448689	rs9297669	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	124448736	rs7014678	A	G	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,254:0.99:256
chr8	124448804	rs6470147	T	A	8790.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr8	124448907	rs10590897	CTT	C	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr8	124448947	rs6470148	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	124449466	rs3824250	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	124449672	rs11991520	T	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	124449712	rs11987798	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	124449742	rs11987776	C	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	124450364	rs3765212	G	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr8	124450631	rs11992509	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	124453543	rs4416808	T	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	124453662	rs13269287	T	C	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr8	124453799	rs1045270	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	124516813	rs73330050	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr8	124525377	rs3739288	T	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	124526607	rs2294088	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,63:0.61:104
chr8	124543970	rs16898538	T	C	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	124547004	rs6988591	T	C	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:106,100:0.49:206
chr8	124658210	rs16898671	C	T	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:202,195:0.49:397
chr8	124658400	rs77201406	G	T	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=1.146;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr8	124658404	rs11786734	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.05;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	124659329	rs11991744	C	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	124663769	rs10109736	A	T	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	124664130	rs11780509	C	T	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	124664167	rs11784192	T	C	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr8	124664368	rs61741356	C	T	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:173,147:0.46:320
chr8	124664708	rs144002487	C	T	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:239,248:0.51:487
chr8	124664792	rs7387544	C	T	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr8	124664873	rs7387792	AT	GC	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr8	124665211	rs7387855	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	124693444	rs3739283	C	T	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	124696867	rs2294015	C	T	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	124710610	rs6995232	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr8	124715120	rs17257150	T	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr8	124749610	rs6470179	C	T	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr8	124749651	rs11331268	TC	T	9175.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr8	124789383	rs73335687	A	G	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	124817605	rs71576705	CT	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=5.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.345;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr8	124824826	rs1946586	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	124982107	.	CA	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-2.117;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr8	124982125	rs7008210	A	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr8	124982215	rs7008604	G	A	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	124985780	rs10102622	A	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr8	124987478	rs7465584	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr8	125022733	rs7844981	T	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr8	125033678	rs7820272	G	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	125035533	rs4521739	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	125035788	rs4358790	G	C	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	125051966	rs4269524	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	125052018	rs4389914	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:85,120:0.59:205
chr8	125061895	rs4870887	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr8	125072426	rs4483140	T	C	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:210,221:0.51:431
chr8	125076589	rs7012186	T	G	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:64,77:0.55:141
chr8	125076988	rs4871460	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	125078915	rs4394375	G	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr8	125088636	rs9643188	A	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr8	125094847	rs10956163	C	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	125107201	rs6470219	G	A	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.41;ReadPosRankSum=2.393;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:102,113:0.53:215
chr8	125107207	rs6470220	C	T	4515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.927;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:103,118:0.53:221
chr8	125110258	rs10956164	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,86:0.52:165
chr8	125131813	rs78565233	G	GC	1136.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:73,48:0.40:121
chr8	125334277	rs78533559	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr8	125384436	rs7841552	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	125463098	rs3812474	A	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr8	125463250	rs3812475	T	C	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:120,117:0.49:237
chr8	125498547	rs3812471	C	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:90,80:0.47:170
chr8	125565267	rs147925237	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr8	125568175	rs3793395	T	C	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:143,198:0.58:341
chr8	125568182	rs3841189	AG	A	2889.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:186,132:0.42:318
chr8	125570144	rs4870903	G	A	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=19.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.152;SOR=0.011;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr8	125574913	rs7015228	G	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr8	125575047	rs16899702	G	T	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:113,109:0.49:222
chr8	125579788	rs3857944	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr8	125579973	rs6470251	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:132,75:0.36:207
chr8	125579990	rs6470252	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,84:0.41:206
chr8	125580928	rs2288664	A	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr8	125589956	rs7002655	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	125601780	rs12682032	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr8	125601964	rs141357674	C	CA	1949.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:128,99:0.44:227
chr8	125602059	rs114283125	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	125711670	rs11358821	TG	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.411;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr8	125711882	rs72714775	C	T	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:138,136:0.50:274
chr8	125739749	rs891542	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	125877563	rs13282575	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=15.830;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.629;SOR=0.015;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	125988819	rs150129922	G	A	2737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.442;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:174,140:0.45:314
chr8	125989268	.	T	G	2821.77	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:165,146:0.47:311
chr8	126019755	rs201939973	TC	T	1439.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr8	126023638	rs3750234	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	126030809	rs966946	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.039;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr8	126033195	rs9297709	T	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:66,49:0.43:115
chr8	126033938	rs114397327	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr8	126044527	rs11542889	C	T	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.188;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:80,71:0.47:151
chr8	126049443	rs2272682	T	C	40.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	126056215	rs11370883	G	GC	8271.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	126059686	.	G	GT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.139;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	126062978	rs61418072	T	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:88,111:0.56:199
chr8	126067646	rs33981879	CAG	C	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr8	126067985	rs2303529	A	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	126068011	rs2303528	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	126070020	.	G	GCAACAACCACTGAATCTCATCAATAT	1455	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=1455;QD=777.5;SC=CCAACAGAGGGCATTAATAGT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=2;WE=126070028;WS=126070010;set=Platypus	GT:AD:AF:DP	1/0:8,2:0.20:10
chr8	126071380	rs3765214	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,46:0.43:106
chr8	126071452	rs3765213	T	C	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:138,129:0.48:267
chr8	126079772	rs55873854	A	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.907;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.681;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr8	126085363	rs10102230	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr8	126087057	rs1004350	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.68;ReadPosRankSum=-0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	126087351	rs79464415	T	G	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr8	126087437	rs2009959	A	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	126088512	rs4458896	G	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr8	126090946	rs11278975	TGTCTTAATAG	T	1382.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr8	126091271	rs74415175	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.746;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	126093789	rs7831848	T	C	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr8	126093882	rs7817303	G	A	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:214,132:0.38:346
chr8	126094614	rs2384917	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.485;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr8	126094728	rs2384916	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.412;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr8	126095503	rs16900368	G	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.763;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:66,42:0.39:108
chr8	126163396	rs77113123	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr8	126445505	rs13277396	G	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	126445537	rs2235110	C	T	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=-1.454;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:129,103:0.44:232
chr8	126445544	rs2235109	C	A	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-1.725;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:135,115:0.46:250
chr8	126448719	rs56395423	A	G	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:88,100:0.53:188
chr8	128099242	rs13257371	C	A	4778.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:270,247:0.48:517
chr8	128099269	rs4571699	A	G	15057.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr8	128099455	rs1840709	G	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:115,62:0.35:177
chr8	128099457	rs61262194	CGTG	C	5516.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:4,144:0.97:148
chr8	128428061	rs4871789	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=2.828;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr8	128428795	rs6998254	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr8	128428823	rs7002225	G	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr8	128429262	rs9297754	G	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	128751201	rs2070582	G	A	7146.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:272,341:0.56:613
chr8	128972721	rs9649959	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr8	129021000	rs1863562	A	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.91;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	129021000	.	AAG	GAA,GAG	164	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=27;MQ=60.0;NF=9,13;NR=1,3;PP=164,39;QD=21.7467874862;SC=GCACAATGCTAAGCATGTGCA;SbPval=0.86;Source=Platypus;TC=16;TCF=13;TCR=3;TR=10,16;WE=129021010;WS=129020990;set=Platypus	GT:AF:DP	0/1:0.62:16
chr8	129021002	rs2033102	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.541;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	129021179	rs2114358	G	A	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	129021262	rs2392823	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	129061242	rs2720660	A	G	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.318;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr8	129162497	rs10956412	A	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chr8	130496232	rs73711562	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr8	130496365	rs6997249	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr8	130760774	rs4733559	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:127,74:0.37:201
chr8	130760850	rs4144738	A	G	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,262:0.99:264
chr8	130761030	rs4144736	G	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	130761644	rs4527833	C	T	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	130763708	rs9297800	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr8	130772882	rs11276511	T	TGCCTGAGTCTTTCCCATA	2084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=2.430;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:74,55:0.43:129
chr8	130788548	rs4733741	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	130868061	rs2306528	G	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	130874674	rs298611	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	131020729	rs4733757	T	C	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	131092026	rs6415509	T	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	131124559	rs966185	T	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:84,54:0.39:138
chr8	131127831	rs2305513	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr8	131128024	rs3217641	G	GA	1461.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr8	131130594	rs10956511	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr8	131136173	rs34680836	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.206;QD=2.74;ReadPosRankSum=1.142;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr8	131146708	.	TA	T	30.71	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	131165086	rs3935174	A	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr8	131165107	rs147026002	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr8	131172791	rs34161158	GT	G	238.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	131172968	rs10089819	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr8	131181348	rs11392401	A	AT	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	131192905	rs28495072	G	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr8	131193153	rs71572332	T	TA	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.610;QD=6.61;ReadPosRankSum=0.407;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:32,32:0.50:64
chr8	131199416	rs72722371	T	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=0.491;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr8	131227019	rs1469286	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr8	131353139	rs13265869	T	C	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:205,238:0.54:443
chr8	131373887	rs10091130	C	G	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:160,172:0.52:332
chr8	131792607	rs5895055	C	CAAA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.566;SOR=2.012;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr8	131812577	rs3067432	C	CAA	999.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=-1.062;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr8	131812899	rs263237	G	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr8	131848378	rs16904370	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	131848465	rs2259296	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	131859768	rs56309349	TA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=8.979;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.042;QD=3.29;ReadPosRankSum=-0.933;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:40,31:0.44:71
chr8	131897082	rs4128982	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	131916318	rs11781997	A	G	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,69:0.51:136
chr8	131916374	rs76542596	AG	A	472.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr8	131921956	rs12547243	A	G	4374.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:245,240:0.49:485
chr8	131922192	rs113253159	T	C	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.268;SOR=0.139;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr8	131922214	rs28416041	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	131922214	.	TGCTCTGTCG	CGCTCTGTCG,CGCTCTGTCT	220	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=30;MMLQ=24;MQ=59.21;NF=4,0;NR=16,4;PP=220,12;QD=12.7385606274;SC=GACGGAGTTTTGCTCTGTCGC;SbPval=0.57;Source=Platypus;TC=20;TCF=4;TCR=16;TR=20,4;WE=131922231;WS=131922204;set=Platypus	GT:AF:DP	0/1:1.00:20
chr8	131922223	rs56251739	G	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.632;SOR=2.044;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	131955452	rs55986691	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.436;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr8	132002576	rs1329803	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	132002770	rs2228950	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr8	132002814	rs11991124	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr8	132947529	rs4736523	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	132952727	rs34080810	A	AT	1791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.624;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,114:0.78:147
chr8	132966028	rs10755935	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	132966045	.	CT	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.759;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr8	132980709	rs6471017	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	132980781	rs2270879	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	132982824	rs1051221	A	G	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	132988478	rs2270876	T	A	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	133008823	rs2270873	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	133023163	rs4736529	G	C	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	133041177	rs6471024	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.76;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	133041179	rs6471025	A	G	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	133041242	rs6471026	C	G	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	133045480	rs2202068	C	T	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	133046927	rs6471028	T	C	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	133046977	rs7834841	A	G	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	133048593	rs1472571	C	T	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	133048619	rs7461611	T	C	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr8	133049810	rs6992506	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	133050900	rs871959	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	133053188	rs2334791	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	133053309	rs7386782	T	C	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	133053318	rs7386783	T	C	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr8	133053714	rs1466884	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	133058325	rs6998359	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=-0.723;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	133067315	rs4736538	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,94:0.47:201
chr8	133082628	rs149256410	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr8	133089975	rs2280851	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr8	133091905	rs11778661	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr8	133092138	rs2403730	G	A	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:165,122:0.43:287
chr8	133101818	rs6471038	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	133107830	rs7833441	T	C	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	133107893	rs10956634	A	G	9150.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr8	133108110	rs2469607	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr8	133111307	rs2469493	C	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr8	133112392	rs1370568	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr8	133116310	rs2436098	G	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr8	133146798	rs111447844	TGAGGA	T	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.12;MQRankSum=1.908;QD=23.72;ReadPosRankSum=-3.014;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	133150103	rs2469515	C	T	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.344;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:86,75:0.47:161
chr8	133175971	rs893391	G	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr8	133184644	rs3049340	TAC	T,TACACAC	566.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/2:0.50,0.50:20
chr8	133459549	rs72721077	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:74,97:0.57:171
chr8	133584558	rs9297853	A	G	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=1.430;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:116,105:0.48:221
chr8	133584821	rs16904707	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.13;ReadPosRankSum=-1.655;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	133590702	rs138045869	A	G	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.951;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:65,74:0.53:139
chr8	133590719	rs13281184	C	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,75:0.52:144
chr8	133634814	rs2272681	C	T	4951.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:257,258:0.50:515
chr8	133637659	rs2293979	G	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:187,165:0.47:352
chr8	133637776	rs2293980	T	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr8	133673945	rs56405379	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr8	133700036	rs3857933	T	C	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	133723166	rs1895807	A	G	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=1.193;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:98,117:0.54:215
chr8	133734414	rs372995413	T	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr8	133734455	.	C	CAA	48	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5005;HP=14;HapScore=3;MGOF=19;MMLQ=16;MQ=58.95;NF=0;NR=5;PP=48;QD=10.4;SC=TTGTACCCACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=5;WE=133734463;WS=133734445;set=Platypus	GT:AD:AF:DP	1/0:5,5:0.50:10
chr8	133764263	rs2467986	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	133764321	rs1469265	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	133769625	rs11778229	T	C	406.85	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr8	133770869	rs11314346	AT	A	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	133880334	rs180203	T	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	133885554	rs180210	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	133900840	.	ATG	A	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.579;QD=12.61;ReadPosRankSum=0.004;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr8	133947859	rs2739062	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	133984058	rs2076740	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:179,158:0.47:337
chr8	133984821	rs1554541	G	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=22.23;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	133985115	rs1403486	A	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	133995475	rs10105779	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	134025781	rs10105991	A	T	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.929;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:83,65:0.44:148
chr8	134025781	.	AGA	TGG	885	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=19;MQ=60.0;NF=19;NR=14;PP=885;QD=28.4384204504;SC=GATGACTGGAAGAATGCATGA;SbPval=0.49;Source=Platypus;TC=72;TCF=43;TCR=29;TR=33;WE=134025791;WS=134025771;set=Platypus	GT:AD:AF:DP	0/1:39,33:0.46:72
chr8	134025783	rs10105992	A	G	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.080;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:85,65:0.43:150
chr8	134052198	rs3835182	G	GCA	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr8	134052219	rs113099362	CACACAT	C	888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.500;MQ=61.33;MQRankSum=1.744;QD=4.73;ReadPosRankSum=3.416;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:141,47:0.25:188
chr8	134057102	rs2256366	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr8	134057476	rs16904808	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr8	134062266	rs2687836	A	G	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.188;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:110,52:0.32:162
chr8	134062327	rs2702972	T	G	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.382;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr8	134062331	rs2741194	G	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.126;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr8	134062912	rs2252807	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	134062983	rs2252805	C	T	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:122,108:0.47:230
chr8	134107223	rs2272706	A	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	134107312	rs73354644	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr8	134107618	rs10103453	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	134108425	rs58129311	C	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr8	134108546	rs2069569	T	C	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:191,172:0.47:363
chr8	134125650	rs72433148	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.971;QD=0.78;ReadPosRankSum=-0.323;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:106,26:0.20:132
chr8	134125682	rs1133076	G	A	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.090;QD=8.84;ReadPosRankSum=-0.139;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:137,117:0.46:254
chr8	134128945	rs10091530	A	G	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:111,134:0.55:245
chr8	134129130	rs11340734	TA	T	131.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	134143910	rs17633144	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.029;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr8	134144113	rs2294024	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	134225068	rs10089461	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr8	134225334	rs114585111	C	T	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:242,220:0.48:462
chr8	134225396	rs55733525	T	TC	14060.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr8	134225434	rs13258091	T	C	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr8	134237578	rs2280834	G	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr8	134237916	rs115028834	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.963;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr8	134239770	rs3739261	T	C	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.846;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:107,135:0.56:242
chr8	134251449	rs2929976	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	134254091	.	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr8	134258711	rs2233339	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr8	134262532	rs2272648	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr8	134274226	rs2233324	C	G	16597.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,631:1.00:631
chr8	134292288	rs2977507	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	134292516	rs2272653	A	G	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr8	134296722	rs7816664	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr8	134296742	rs7820205	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr8	134308600	rs4236901	T	C	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	134308858	rs71526287	A	C	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=12.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.114;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:160,130:0.45:290
chr8	134314037	rs112386359	CCAT	C	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr8	134314369	rs2976580	A	G	61.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	134314403	rs16904885	G	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	134472026	rs370215769	C	T	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:102,97:0.49:199
chr8	134474148	rs1048479	C	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:160,132:0.45:292
chr8	134488007	rs2230542	G	A	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:204,205:0.50:409
chr8	134537936	rs9632828	G	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:169,143:0.46:312
chr8	135521880	rs16905160	C	T	5218.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:210,261:0.55:471
chr8	135522364	rs2289547	A	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	135522463	rs2289548	G	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	135524797	rs3739429	G	T	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	135524933	rs3739428	G	A	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	135524938	rs3739427	T	C	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	135577530	rs6999469	G	A	3034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=0.038;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:85,80:0.48:165
chr8	135577533	rs6988653	T	G	3079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=0.404;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:90,82:0.48:172
chr8	135595944	rs7825462	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr8	135596318	rs137885117	A	AAT	137.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	135612595	rs894343	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr8	135614705	rs3739423	A	G	4326.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:202,212:0.51:414
chr8	135650071	rs7831658	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=-0.108;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	135652020	rs56823443	C	T	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=3.092;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:137,122:0.47:259
chr8	135725058	rs71528372	C	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=1.118;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:97,97:0.50:194
chr8	136303322	rs115976655	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr8	136657198	rs4243846	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	136657534	rs4373553	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=1.242;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr8	136659426	rs3184618	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	139149510	rs6577877	A	C	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr8	139151375	rs4634694	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.340;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr8	139151421	rs4634695	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr8	139151428	rs35147483	C	CTG	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	139153374	rs4909738	G	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr8	139158169	rs2280849	G	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	139158317	rs7006664	T	C	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	139164192	rs3750306	G	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:160,115:0.42:275
chr8	139165068	rs3763590	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:86,60:0.41:146
chr8	139165272	rs7835712	TG	CA	7208.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;JOINED;set=Intersection	GT:AD:AF:DP	0/1:194,187:0.49:381
chr8	139165289	rs7835830	T	C	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:194,161:0.45:355
chr8	139165463	rs11311519	CA	C	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr8	139180058	rs16908405	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr8	139189502	rs6985633	T	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr8	139190957	rs4909747	T	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr8	139255138	rs189820651	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=1.105;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr8	139263328	rs4909765	A	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	139321179	rs6577909	A	G	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,251:0.99:253
chr8	139323246	rs56096441	A	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	139323300	rs144567742	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	139380103	rs150136153	A	AAC	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.314;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr8	139603851	rs10106999	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	139606529	rs10110076	G	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;QD=40.67;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	139606539	rs10097485	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.89;QD=44.90;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	139609087	rs7832390	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,56:0.44:126
chr8	139610955	rs184823302	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr8	139614217	rs77346513	A	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr8	139614267	rs76028584	C	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:81,66:0.45:147
chr8	139614436	rs4394401	G	A	9682.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr8	139614582	rs6993225	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	139618515	rs11997387	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	139618754	rs4471041	T	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chr8	139620341	rs11992445	C	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr8	139626176	rs7000261	C	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	139629279	rs138352509	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr8	139631650	rs7009396	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr8	139631689	rs62530042	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr8	139635883	rs7836250	A	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr8	139635920	rs7839790	T	A	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,86:0.52:165
chr8	139638307	rs3924860	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=0.241;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	139642798	rs4634647	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	139642974	rs4131277	T	C	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.735;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr8	139648892	rs11166830	G	A	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=0.408;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,73:0.67:109
chr8	139658747	rs4909439	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr8	139668300	rs12675091	C	T	4072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.67;ReadPosRankSum=-0.778;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:90,107:0.54:197
chr8	139668308	rs73721910	G	A	3970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.35;ReadPosRankSum=-1.260;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:84,102:0.55:186
chr8	139672602	rs4072506	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.905;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr8	139672698	rs59772852	C	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,112:0.62:182
chr8	139674213	rs11780732	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr8	139675869	rs11166835	G	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr8	139676082	rs4410946	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr8	139688656	.	A	AAAAG	301.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.16;MQRankSum=0.140;QD=33.47;ReadPosRankSum=0.589;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr8	139688697	rs7837674	A	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.022;QD=8.14;ReadPosRankSum=-3.090;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr8	139696502	rs5895552	GA	G	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.935;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.750;QD=7.86;ReadPosRankSum=1.593;SOR=1.599;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr8	139696635	rs4506262	T	C	7965.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr8	139697286	rs11787153	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr8	139697478	rs9644500	T	C	3541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.266;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:201,184:0.48:385
chr8	139705849	rs72729635	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	139706888	rs10109299	G	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr8	139707019	rs62527938	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	139712323	rs4909835	A	G	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	139712598	rs12677298	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr8	139729193	rs77563959	A	G	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:264,209:0.44:473
chr8	139732919	rs115981203	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr8	139734462	rs12678237	T	C	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	139736649	rs28726333	C	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	139737521	rs12545759	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.866;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr8	139749638	rs4409435	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	139763554	rs77081234	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.751;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	139767296	rs115678760	T	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr8	139767349	rs2318338	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr8	139768085	rs7825723	G	A	3897.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:174,194:0.53:368
chr8	139774831	.	GCA	G	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.281;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:92,20:0.18:112
chr8	139788313	rs373706579	G	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr8	139790535	rs74569317	C	T	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.469;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:120,85:0.41:205
chr8	139791873	rs143315160	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:138,82:0.37:220
chr8	139823922	rs2318332	C	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	139824057	rs10101430	G	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	139825393	rs6577951	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	139838912	rs2292927	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	139845520	rs6993839	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	139889972	rs4736255	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	140630990	rs2615374	A	G	5997.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:279,296:0.51:575
chr8	140842536	rs142059590	G	GCA	3414.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=22.47;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	141034189	rs9792174	A	T	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.836;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:117,151:0.56:268
chr8	141297613	rs6999767	T	C	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	141297925	rs111465816	T	TC	6621.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	141301003	rs62527544	A	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	141301299	rs77369667	T	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	141370023	rs111946399	TG	CT	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr8	141370186	rs34179337	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:197,132:0.40:329
chr8	141445349	rs11267571	AAGAAAACAAAAAACAAAAACC	A	5662.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.94;SOR=1.953;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	141460918	rs57593250	C	T	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	141461074	rs61739560	A	G	8994.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr8	141461116	rs34457678	C	T	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr8	141461185	rs3735802	A	G	10037.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr8	141461266	rs3735801	A	G	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr8	141461559	rs73713134	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	141468331	rs76594490	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr8	141522164	rs76790724	C	G	8759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-1.142;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:606,477:0.44:1083
chr8	141525465	rs2231527	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	141549326	rs115826075	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr8	141549346	rs35387146	CT	C	2121.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	141557497	rs2292782	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	141561357	rs2292780	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr8	141561393	rs2292779	G	C	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	141568622	rs2292778	G	A	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	141568699	rs2292777	A	G	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr8	141568725	rs2292776	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	141569652	rs3830525	G	GGCCTAA	1763.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr8	141583108	rs11293451	AT	A	1105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.806;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.183;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:18,87:0.83:105
chr8	141669818	rs3835176	AT	A	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:6,103:0.94:109
chr8	141670907	rs9324530	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr8	141679755	rs59811767	CA	C	861.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-1.098;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr8	141679817	rs10283368	T	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.066;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:64,41:0.39:105
chr8	141685506	rs13249806	T	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.000;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:87,49:0.36:136
chr8	141685641	rs6998337	C	A	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	141712599	rs59194387	G	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr8	141712904	rs57585617	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr8	141716284	rs10100025	G	A	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:130,124:0.49:254
chr8	141754888	.	G	GA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.958;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr8	141756991	rs369382658	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.363;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr8	141762558	rs6578132	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr8	141779826	rs10875458	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.049;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr8	141840645	rs4246127	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr8	141840739	rs4246128	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.13;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	141902735	.	TA	T	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.064;QD=6.29;ReadPosRankSum=-1.703;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:44,38:0.46:82
chr8	141994240	rs13258775	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.452;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	141994271	rs13250222	C	A	349.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.110;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	141994272	rs13251272	A	C	349.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.055;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	141994297	rs4961311	A	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.214;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr8	142138860	rs3739232	C	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	142146708	rs307772	T	C	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr8	142152442	rs307765	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	142154262	rs307762	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr8	142154291	rs307761	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	142160876	rs170088	C	T	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	142161031	rs445616	C	T	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.345;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:216,156:0.42:372
chr8	142161031	.	CA	TC	833	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=59.93;NF=32;NR=36;PP=833;QD=13.0362922774;SC=TGCTGTGCTTCAGGCCTGAGA;SbPval=0.55;Source=Platypus;TC=194;TCF=91;TCR=103;TR=68;WE=142161040;WS=142161021;set=Platypus	GT:AD:AF:DP	0/1:126,68:0.35:194
chr8	142161032	rs441914	A	C	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.47;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	142161666	.	A	AT	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=2.174;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr8	142161873	rs2304284	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:98,109:0.53:207
chr8	142161888	rs2304283	G	A	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,90:0.52:172
chr8	142161957	rs170089	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	142166209	rs573707	G	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.806;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr8	142166214	rs555399	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.40;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	142173356	rs428300	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr8	142176507	rs412706	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr8	142185718	rs307733	T	C	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	142186573	rs307732	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	142188159	rs74695616	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr8	142190765	rs79516728	A	C	2381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=2.872;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:138,119:0.46:257
chr8	142190934	rs149194254	C	T	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:186,176:0.49:362
chr8	142198961	rs76623434	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr8	142200205	rs144741369	T	TCATGTTTG	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	142202856	rs6990186	C	T	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:170,165:0.49:335
chr8	142202884	rs7014062	T	C	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:165,178:0.52:343
chr8	142204326	rs1045248	C	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr8	142204465	rs111317933	CGTGTGG	C	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	142221799	rs112375963	A	G	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr8	142222261	rs3824235	A	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.927;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr8	142222374	rs7017848	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,84:0.54:155
chr8	142222445	rs3739238	T	C	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:144,157:0.52:301
chr8	142225990	rs2288998	G	A	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:191,193:0.50:384
chr8	142228077	rs3842198	AGAGCGGCCCCGCTCCGGT	A	1986.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr8	142228809	rs753779	T	C	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:189,207:0.52:396
chr8	142229145	rs3739235	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:66,88:0.57:154
chr8	142229891	rs2304279	A	G	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:123,135:0.52:258
chr8	142229946	rs4961256	G	A	2054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.57;ReadPosRankSum=-1.701;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr8	142229952	rs111447630	G	C	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.040;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:48,49:0.51:97
chr8	142231917	rs112942235	A	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr8	142231944	rs6983780	GC	AG	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr8	142266691	rs7002500	A	C	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:117,120:0.51:237
chr8	142266954	rs73366420	G	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=1.732;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr8	142266958	.	C	CT	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=0.683;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	142367335	rs10875472	T	C	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	142367400	rs11167054	G	A	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:3,378:0.99:381
chr8	142368150	rs7388121	T	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	142368150	.	TCCCCCTTCTC	GCCCCCATCTC,GCCCCCATCTG	159	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=5;MMLQ=28;MQ=60.0;NF=9,6;NR=18,8;PP=157,159;QD=7.79510647638;SC=ACGCCCAGCATCCCCCTTCTC;SbPval=0.64;Source=Platypus;TC=28;TCF=10;TCR=18;TR=27,14;WE=142368168;WS=142368140;set=Platypus	GT:AF:DP	0/1:0.96:28
chr8	142368156	rs7388122	T	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	142368160	rs60818561	C	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.266;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr8	142432259	rs28712476	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:133,105:0.44:238
chr8	142437034	rs74648509	C	T	3211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.204;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:241,181:0.43:422
chr8	142437782	rs77396073	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr8	142444234	rs371671775	GGGGT	G	2173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.859;QD=22.88;ReadPosRankSum=-0.458;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr8	142444240	rs28490954	G	C,T	3706.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;QD=39.02;SOR=0.947;set=HC	GT:AD:AF:DP	1/2:0,56,39:0.59,0.41:95
chr8	142444254	rs28372340	T	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.09;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	142444322	rs7387009	A	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.605;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	142444526	rs10104447	G	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	142444780	rs10104806	G	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	142445062	rs35650977	T	TG	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	142445108	rs111874351	C	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr8	142445184	rs116264116	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr8	142445597	rs75120933	C	G	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:252,197:0.44:449
chr8	142445659	rs79988544	G	A	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:176,244:0.58:420
chr8	142445680	rs11784911	A	T	5121.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:180,247:0.58:427
chr8	142451399	rs73372116	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr8	142459814	rs7003306	C	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	142477752	rs11775650	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr8	142480610	rs4907398	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	142483145	.	ACCCCCCC	A,ACCCCCC	459.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=22;set=Intersection	GT:AF:DP	1/2:0.67,0.33:15
chr8	142484366	rs33975024	A	AG	7978.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	142487290	rs28568753	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.91;ReadPosRankSum=-2.458;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	142487330	rs28698013	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.312;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr8	142487333	rs2247440	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	142487737	rs145499498	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr8	142487856	rs11779508	A	G	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:165,146:0.47:311
chr8	142488662	rs2613643	C	T	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.522;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:38,63:0.62:101
chr8	142488803	rs148998862	C	T	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr8	142489224	rs200308744	TC	T	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr8	142489391	rs148146930	GC	TT	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr8	142489981	rs2748417	C	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	142490079	rs2613641	G	A	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr8	142490120	rs2748416	G	T	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr8	142490214	rs58431362	G	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr8	142505038	rs6578193	T	C	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	142505056	rs2246587	T	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:101,72:0.42:173
chr8	142505578	rs2748404	C	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	142506461	rs2613637	A	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr8	142506728	rs2380253	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	142517130	rs11464845	T	TG	916.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,48:0.35:136
chr8	142517137	rs56233552	G	A	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:65,93:0.59:158
chr8	142524920	rs67192626	C	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.325;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:73,46:0.39:119
chr8	142525074	rs72685454	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=1.975;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr8	143257568	rs73375434	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	143257795	rs7007430	G	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-2.030;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr8	143310815	rs11167136	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:85,108:0.56:193
chr8	143352978	rs11777062	T	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	143353038	rs35674714	C	T	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	143365913	rs5895710	GT	G	3661.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	143381810	rs7822013	T	C	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	143396446	rs62000450	C	T	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:218,209:0.49:427
chr8	143399752	rs4514123	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr8	143412377	rs34722595	T	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:94,123:0.57:217
chr8	143413136	rs10435683	C	T	11220.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr8	143425271	rs67990630	C	A	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.857;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr8	143425553	rs61741289	C	T	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:168,198:0.54:366
chr8	143425720	rs10100935	T	C	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	143427178	rs33970858	C	G	6806.77	.	AC=1;AF=0.500;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	0/1:503,365:0.42:868
chr8	143436034	rs7814359	A	G	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:279,240:0.46:519
chr8	143447503	rs7388487	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	143546381	.	TGGGCAGACAGGGGAGGC	T	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.835;SOR=1.734;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr8	143556790	rs55875009	G	A	6080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.177;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:326,312:0.49:638
chr8	143559431	rs10481394	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	143560504	rs13279697	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	143560555	rs13252518	T	C	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	143560895	rs12682337	G	A	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	143560898	rs12680973	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	143560996	rs66517676	AGCCAGCT	A	10149.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	143561206	rs4509377	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	143563087	rs11782438	C	G	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	143563161	rs11776057	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	143570281	rs73714305	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	143570826	rs113804093	G	C	6858.77	.	AC=1;AF=0.500;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	0/1:473,364:0.43:837
chr8	143570921	rs7825551	A	G	9639.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr8	143599631	rs13281622	A	G	14580.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr8	143599634	rs13254098	T	G	14635.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr8	143599651	rs13281652	A	C	12301.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	143599665	rs13254123	T	C	10231.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	143599704	rs13281694	A	C	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	143599716	rs13278828	G	C	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	143599734	rs13281922	A	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	143599746	rs13281935	A	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=43.95;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	143599753	rs13281945	A	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=49.64;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	143603269	rs7463713	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	143603318	rs7462471	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	143603418	rs7460600	G	C	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	143614623	rs13269567	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	143614641	rs13272804	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	143614910	rs78796157	G	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr8	143620570	rs7387853	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	143620822	rs7388198	T	C	8791.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	143623372	rs61755064	C	A	3395.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:126,159:0.56:285
chr8	143684576	rs73716450	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr8	143684651	rs35910463	C	CT	129.90	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr8	143684655	rs58986836	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.46;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	143694775	rs28686812	G	C	10637.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr8	143695678	rs28403912	A	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.73;ReadPosRankSum=0.032;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr8	143695681	rs28641083	G	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.73;ReadPosRankSum=0.095;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr8	143696749	rs28660666	G	A	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	143696832	rs28625055	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.508;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	143696849	rs113034628	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	143746050	rs2976399	C	T	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:192,188:0.49:380
chr8	143746069	rs3735999	T	C	11034.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr8	143746087	rs33951456	CCA	C	17381.73	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr8	143746107	rs61747165	C	T	5005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.776;QD=10.63;ReadPosRankSum=-0.318;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:218,253:0.54:471
chr8	143746399	rs73379623	T	C	7188.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:172,193:0.53:365
chr8	143746414	rs115218091	G	A	7108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-1.692;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:163,187:0.53:350
chr8	143746414	.	GCA	ACG	992	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=22;MQ=60.0;NF=35;NR=42;PP=992;QD=13.5775048683;SC=GTTGTAGCGGGCATGGGGGCC;SbPval=0.48;Source=Platypus;TC=162;TCF=72;TCR=90;TR=77;WE=143746424;WS=143746404;set=Platypus	GT:AD:AF:DP	1/0:85,77:0.48:162
chr8	143746416	rs754957	A	G	12641.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.12;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr8	143746701	rs3802232	A	G	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr8	143746722	rs60195180	G	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:98,114:0.54:212
chr8	143762724	rs2976391	C	A	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	143763618	rs2976393	C	G	12972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.40;ReadPosRankSum=0.780;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:309,327:0.51:636
chr8	143763622	rs2976394	C	T	13198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.090;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:317,351:0.53:668
chr8	143763690	rs10216533	G	A	12704.73	.	AC=1;AF=0.500;AN=2;DB;DP=1129;set=Intersection	GT:AD:AF:DP	0/1:493,615:0.56:1108
chr8	143781858	rs1048831	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	143781910	rs34416856	C	A	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.899;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:108,83:0.43:191
chr8	143782044	rs2585174	A	G	12996.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr8	143783240	rs10564411	CT	C	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-0.396;QD=7.90;ReadPosRankSum=-2.423;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	143784500	rs2244163	T	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	143808667	rs2257796	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	143808951	rs2585138	C	T	8207.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr8	143809193	rs2257840	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	143845950	rs2585187	A	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.13;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	143845950	.	AGCT	GGCC,GGCT	827	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.56;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=24;MQ=59.79;NF=12,43;NR=7,22;PP=140,827;QD=10.1825197296;SC=AGGGAGGGGCAGCTGTGAGCC;SbPval=0.47;Source=Platypus;TC=65;TCF=43;TCR=22;TR=19,65;WE=143845961;WS=143845940;set=Platypus	GT:AF:DP	0/1:0.29:65
chr8	143845953	rs2717554	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.832;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:67,32:0.32:99
chr8	143849626	rs7006366	T	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=27.69;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	143857265	rs2585125	G	T	10774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=1.094;SOR=0.385;set=HC	GT:AD:AF:DP	1/1:1,421:1.00:422
chr8	143857441	rs3214637	A	AGG	3703.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	143867157	rs60714144	C	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	143867841	rs2717607	C	G	9939.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr8	143867905	rs2572925	C	T	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	143922620	rs3764795	C	T	3933.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=-2.452;SOR=0.435;set=HC	GT:AD:AF:DP	1/1:3,156:0.98:159
chr8	143956837	rs61752789	C	G	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-0.109;QD=10.82;ReadPosRankSum=0.826;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr8	143956925	rs6392	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	143956965	rs6391	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	143957333	rs61752764	G	C	14575.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr8	143957886	rs10105643	A	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	143958342	rs113759408	G	A	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr8	143959289	rs7818953	T	C	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr8	143961005	rs6410	T	C	7807.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr8	143993640	rs6433	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	143994321	rs6435	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr8	143994349	rs6397	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr8	143994361	rs4736320	T	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr8	143994376	rs6396	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=1.250;QD=2.40;ReadPosRankSum=-0.456;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr8	143994388	rs6429	G	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=1.395;QD=6.74;ReadPosRankSum=-1.436;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr8	143994391	rs79410128	G	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=1.333;QD=6.43;ReadPosRankSum=-1.434;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	143994396	rs79201878	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=0.872;QD=4.23;ReadPosRankSum=-0.763;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr8	143994398	rs80062072	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=0.872;QD=4.23;ReadPosRankSum=-0.944;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr8	143994399	rs74838461	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=0.658;QD=4.44;ReadPosRankSum=-0.106;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr8	143994413	rs186478459	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=0.792;QD=3.67;ReadPosRankSum=0.338;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr8	143994419	rs5895735	T	TG	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=0.838;QD=3.52;ReadPosRankSum=0.217;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr8	143994450	rs62525984	A	G	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.08;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	143994702	rs4538	G	T	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	143994944	rs13252628	T	G	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:188,217:0.54:405
chr8	143994978	.	CAAA	C,CAA	10476.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=245;set=Intersection	GT:AF:DP	1/1:1.00:235
chr8	143994981	.	AA	CG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=4;HapScore=1;MGOF=11;MMLQ=24;MQ=60.05;NF=32;NR=100;PP=2947;QD=20;SC=CCCTGAGCAAAAACAGAGCCC;SbPval=0.54;Source=Platypus;TC=134;TCF=33;TCR=101;TR=132;WE=143994990;WS=143994968;set=Platypus	GT:AD:AF:DP	1/1:2,132:0.99:134
chr8	143994982	.	A	ACG	10476.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.58;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	143995743	rs4543	C	T	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:91,120:0.57:211
chr8	143995761	rs4536	C	T	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	143996059	rs6434	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=48.66;MQRankSum=-2.308;QD=8.98;ReadPosRankSum=-0.641;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	143996067	.	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-1.578;QD=7.93;ReadPosRankSum=-1.230;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	143996314	rs113284476	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:90,25:0.22:115
chr8	143997877	rs7461740	C	G	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.546;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-6.405;QD=4.81;ReadPosRankSum=0.187;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:277,117:0.30:394
chr8	143997935	rs10099658	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-8.864;QD=0.15;ReadPosRankSum=-4.938;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:200,26:0.12:226
chr8	144063624	rs61688795	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	144063784	rs28540461	G	A	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr8	144064047	rs56653988	TA	T	349.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	144097453	rs13279735	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-1.296;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	144099462	.	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,65:0.57:114
chr8	144102872	rs111344770	G	A	6543.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:257,315:0.55:572
chr8	144124512	rs11136299	T	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:105,82:0.44:187
chr8	144124609	rs11136300	T	C	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr8	144124794	rs76199662	C	T	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=1.157;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr8	144125457	rs139992645	AGCTGAGGGT	A	1024.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr8	144125727	rs6997455	T	A	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	144126087	rs73717943	C	A	5441.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:339,283:0.45:622
chr8	144126244	rs4612316	T	C	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	144130550	rs12677862	C	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:79,40:0.34:119
chr8	144239660	rs7007949	G	A	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	144239859	rs10109061	A	G	9511.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr8	144297020	rs78123380	G	A	21459.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	1/1:1,810:1.00:811
chr8	144297269	rs78367243	C	T	14481.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr8	144332012	rs6558339	T	C	2941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.351;QD=12.36;ReadPosRankSum=-1.679;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:90,148:0.62:238
chr8	144332082	rs11136275	T	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:141,108:0.43:249
chr8	144332367	rs73376288	G	A	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:277,197:0.42:474
chr8	144332632	rs73376291	G	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr8	144351632	rs6558341	A	G	12118.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr8	144357345	rs56871834	C	G	24693.77	.	AC=2;AF=1.00;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	1/1:2,949:1.00:951
chr8	144357369	rs58198736	C	T	23173.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:0,885:1.00:885
chr8	144357479	rs3812433	C	G	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	144357975	rs2293924	C	T	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	144357992	rs2293923	A	G	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	144358819	rs73378237	T	G	14679.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:2,563:1.00:565
chr8	144358983	rs73378238	G	A	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	144359014	rs7002253	A	T	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr8	144359059	rs11990723	C	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	144375390	rs73378292	C	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	144377760	rs73378296	G	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=2.109;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	144378184	rs2235115	C	G	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:119,165:0.58:284
chr8	144378868	rs7386259	A	G	14375.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-0.897;SOR=0.333;set=HC	GT:AD:AF:DP	1/1:1,557:1.00:558
chr8	144391452	rs11136285	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr8	144391728	rs7386475	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:64,90:0.58:154
chr8	144391873	rs10105378	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr8	144391924	rs10099789	CT	TC	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;JOINED;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr8	144397694	rs7815223	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-1.068;QD=9.11;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	144397696	rs28432960	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=1.068;QD=12.25;ReadPosRankSum=0.484;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	144397798	rs35506042	G	GGA	1566.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr8	144398029	rs13275896	A	G	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr8	144398132	rs2293927	T	C	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,83:0.49:171
chr8	144399856	rs3215410	TC	T	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	144399885	rs2272637	A	C	711.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.948;QD=20.93;ReadPosRankSum=0.590;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr8	144399885	.	AG	CT	673	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=27;MQ=60.19;NF=12;NR=7;PP=673;QD=38.2351513085;SC=GGTGTGGGGCAGGCTCACCGC;SbPval=0.44;Source=Platypus;TC=31;TCF=21;TCR=10;TR=19;WE=144399894;WS=144399875;set=Platypus	GT:AD:AF:DP	0/1:12,19:0.61:31
chr8	144399886	rs2272636	G	T	711.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.053;QD=18.73;ReadPosRankSum=1.608;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr8	144400065	rs2272635	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:127,82:0.39:209
chr8	144400322	rs60816119	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr8	144403449	rs61631623	G	A	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:216,265:0.55:481
chr8	144403485	rs11544482	G	C	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:167,146:0.47:313
chr8	144406579	rs3812435	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr8	144406627	rs3829018	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr8	144406705	rs11544484	C	T	5449.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:358,289:0.45:647
chr8	144406887	rs79578132	C	T	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:90,109:0.55:199
chr8	144407479	rs73382105	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr8	144408616	rs3829019	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr8	144409934	rs35096181	C	A	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:136,86:0.39:222
chr8	144409938	rs11424162	A	AG	3198.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:137,87:0.39:224
chr8	144411759	rs3812436	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	144411767	rs2467894	C	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.55;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	144413416	rs2450772	G	A	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	144413633	rs2450773	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	144416901	rs2450775	A	C	17621.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:2,680:1.00:682
chr8	144416973	rs201559470	G	C	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:111,135:0.55:246
chr8	144417051	rs2956274	A	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	144425247	rs7837655	C	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	144425344	rs2450781	T	C	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr8	144460569	rs901762	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr8	144462169	rs3812440	A	G	8098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.800;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:511,420:0.45:931
chr8	144464073	rs34746679	G	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-1.341;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr8	144511389	rs7386685	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	144511755	rs78739463	C	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:135,119:0.47:254
chr8	144511953	rs141816879	ATGG	A	15735.73	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr8	144511995	rs1872900	A	G	9538.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	144523018	rs2294115	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	144523323	rs2294114	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr8	144567289	rs75072288	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr8	144618379	rs11774857	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	144620183	rs4874147	T	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr8	144620342	rs1318196	T	C	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:165,125:0.43:290
chr8	144621084	rs3750207	T	G	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:134,160:0.54:294
chr8	144623735	rs2242092	G	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr8	144636949	rs7844860	T	C	6068.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:326,313:0.49:639
chr8	144641159	rs59789236	G	GGTGA	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.95;ReadPosRankSum=4.588;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr8	144641161	rs4292703	A	G,ACTCTGGCTGGGTTTTGCAGTGGGTCCCTGCG	3176.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=149;set=Intersection	GT:AF:DP	1/2:0.67,0.33:79
chr8	144641313	rs7840166	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	144641753	rs4874151	A	C	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:143,162:0.53:305
chr8	144642151	rs146152826	G	GAGGGC	2547.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:86,126:0.59:212
chr8	144642178	rs11774948	T	C	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	144642244	rs73375262	A	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr8	144642490	rs73375263	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr8	144642596	rs7835865	T	C	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:122,131:0.52:253
chr8	144642626	rs7831485	A	G	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	144642854	rs11551202	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:128,112:0.47:240
chr8	144642986	rs11136298	T	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	144643035	.	C	T	733.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr8	144643321	rs12541790	A	G	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	144643603	rs2290414	G	A	8795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=-0.796;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:2,350:0.99:352
chr8	144644085	rs112002155	G	A	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:162,203:0.56:365
chr8	144644583	rs1349806	G	C	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	144644787	rs1377663	T	A	9935.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr8	144649550	rs7010602	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.39;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	144649601	rs13268196	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	144649625	rs10097556	T	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	144649650	rs13254352	C	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr8	144649690	rs13254590	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	144649968	rs13255489	C	T	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	144650503	rs13271361	G	A	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	144650550	rs10101426	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.93;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	144650550	.	TG	CA,CG	433	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=2;HapScore=2;MMLQ=27;MQ=60.0;NF=5,14;SC=GGCAGGAGACTGGATTGATTC;Source=Platypus;TCF=14;WE=144650559;set=Platypus	GT:AF:DP	0/1:0.30:40
chr8	144650551	rs115566595	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.212;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr8	144650925	rs13279011	A	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr8	144651554	rs6983410	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.19;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144651576	rs7013931	C	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	144652281	rs11990325	T	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:125,102:0.45:227
chr8	144652393	rs11280720	C	CCCCTCCTCA	10451.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:300,243:0.45:543
chr8	144653011	rs11777527	C	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=14.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.225;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:45,68:0.60:113
chr8	144653218	rs4874152	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	144654255	rs4874153	A	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:83,108:0.57:191
chr8	144654582	rs4874154	C	A	7264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.712;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:241,351:0.59:592
chr8	144654586	rs4874155	G	C	19119.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.54;ReadPosRankSum=-0.329;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:4,566:0.99:570
chr8	144657269	rs2290417	G	C	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:121,145:0.55:266
chr8	144657801	rs9771743	G	A	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-2.049;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:128,141:0.52:269
chr8	144657969	.	TGGG	T	492	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=7;HapScore=2;MGOF=11;MMLQ=27;MQ=59.31;NF=2;NR=10;PP=492;QD=43.5;SC=CTGCCCTGGGTGGGGAAGGGG;SbPval=0.34;Source=Platypus;TC=20;TCF=2;TCR=18;TR=12;WE=144657979;WS=144657959;set=Platypus	GT:AD:AF:DP	1/0:8,12:0.60:20
chr8	144659055	rs56159848	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr8	144660046	rs896954	G	A	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:257,196:0.43:453
chr8	144660523	rs4475500	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	144663343	.	C	G	1741.77	.	AC=1;AF=0.500;AN=2;DP=212;set=Intersection	GT:AD:AF:DP	0/1:116,90:0.44:206
chr8	144668590	rs11780087	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.16;ReadPosRankSum=1.602;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	144671244	rs4874160	C	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr8	144671685	rs6985081	G	C	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:216,212:0.50:428
chr8	144671922	rs3812448	G	A	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:199,163:0.45:362
chr8	144672541	rs751932	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr8	144681777	rs10282929	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:94,71:0.43:165
chr8	144687896	rs35955574	G	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-1.447;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr8	144689686	rs4874169	A	G	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:392,335:0.46:727
chr8	144689771	rs28405113	C	A	8354.77	.	AC=1;AF=0.500;AN=2;DB;DP=933;set=Intersection	GT:AD:AF:DP	0/1:500,427:0.46:927
chr8	144689914	rs11136305	C	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:109,85:0.44:194
chr8	144689932	rs34360518	CACAT	C	3090.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:118,84:0.42:202
chr8	144690014	rs4874170	T	C	5339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.304;QD=6.50;ReadPosRankSum=2.392;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:517,305:0.37:822
chr8	144690886	rs10097337	A	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr8	144695867	rs6558377	A	G	10624.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	144696203	rs4634659	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr8	144732363	rs4875017	T	C	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	144732418	rs4874084	A	G	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	144732450	rs3750204	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:108,116:0.52:224
chr8	144776109	rs11786757	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	144789624	rs75368383	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:266,149:0.36:415
chr8	144800004	rs12543136	G	A	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	144800552	rs6997797	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	144801243	rs12678428	C	T	2815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.119;QD=8.33;ReadPosRankSum=1.432;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:187,151:0.45:338
chr8	144801264	rs140038594	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:124,138:0.53:262
chr8	144801347	rs5895782	AC	A	1439.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr8	144801681	rs11778657	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	144802670	rs112919018	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr8	144803450	rs34410761	C	T	7260.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:274,340:0.55:614
chr8	144803616	rs11783357	C	T	15042.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr8	144808003	rs4875045	G	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	144808747	rs11136321	G	A	4292.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:333,232:0.41:565
chr8	144809804	rs13254035	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:126,99:0.44:225
chr8	144810970	rs11136322	C	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr8	144811270	rs201408056	G	A	5389.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:229,256:0.53:485
chr8	144811338	rs9969600	C	G	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr8	144822054	.	G	A	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.495;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:62,83:0.57:145
chr8	144824898	rs7463016	A	C	11786.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr8	144825035	rs4074642	T	G	3589.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:209,182:0.47:391
chr8	144825272	rs4074641	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr8	144873666	rs9314416	G	C	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	144873779	rs9314417	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	144873996	rs367554617	CA	C	167.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.380;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr8	144873997	rs6982642	A	C	1406.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-0.364;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:17,70:0.80:87
chr8	144874366	rs7461245	T	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	144874382	rs376037864	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr8	144874554	rs6991873	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	144875050	rs75951994	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:258,163:0.39:421
chr8	144875336	.	C	T	152.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	144877507	.	T	TGAGCA	4276.73	.	AC=1;AF=0.500;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr8	144885580	rs13281371	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr8	144886628	rs34099611	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr8	144887075	rs147910269	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr8	144887656	rs7830442	A	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:125,97:0.44:222
chr8	144890873	rs10098508	A	T	12903.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr8	144892703	rs114102220	C	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:117,68:0.37:185
chr8	144892833	rs146352008	C	A	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:245,233:0.49:478
chr8	144893084	rs6558394	G	A	6331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.796;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:298,314:0.51:612
chr8	144894496	rs4875060	G	A	5464.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:248,273:0.52:521
chr8	144894641	rs4875061	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	144894702	rs11404566	C	CT	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr8	144900756	rs7833632	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr8	144904690	rs4875063	A	G	5571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.047;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:361,293:0.45:654
chr8	144911360	rs7461986	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	144917643	rs74755081	C	A	4617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.922;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:188,237:0.56:425
chr8	144917790	rs11774027	A	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,121:0.52:233
chr8	144919284	rs56010327	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:121,117:0.49:238
chr8	144921637	rs200368321	TG	T	652.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr8	144940081	rs60421625	C	A	138.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.35;ReadPosRankSum=0.319;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr8	144940092	.	C	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=3.215;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	144940290	rs201976887	C	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=0.039;QD=0.47;ReadPosRankSum=0.939;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:547,78:0.12:625
chr8	144940300	rs4977191	G	A	12939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=3.903;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.552;QD=20.54;ReadPosRankSum=3.124;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:152,478:0.76:630
chr8	144940706	rs112377501	C	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.556;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:1086,167:0.13:1253
chr8	144941555	rs199879536	T	C	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:347,291:0.46:638
chr8	144941940	rs73715514	G	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:126,133:0.51:259
chr8	144942903	rs6558399	T	C	11788.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr8	144943383	rs370944860	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr8	144945535	rs73715515	G	A	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr8	144945792	rs13255110	T	C	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	144947062	rs7819087	C	T	13482.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.08;ReadPosRankSum=-0.259;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:2,515:1.00:517
chr8	144990528	rs7014582	A	G	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	144991176	rs6558405	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr8	144992103	rs6558406	T	C	17389.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr8	144992361	rs7822511	T	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr8	144992862	rs7819099	A	G	9623.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr8	144993377	rs6992333	A	G	9411.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:4,365:0.99:369
chr8	144994212	rs34644439	A	T	21390.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=0.920;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,820:1.00:822
chr8	144994916	rs35027700	C	T	16630.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.922;SOR=0.419;set=HC	GT:AD:AF:DP	1/1:3,654:1.00:657
chr8	144996029	rs7833924	A	G	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr8	144997319	rs371763907	C	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:260,221:0.46:481
chr8	144997689	rs200444977	C	T	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:149,175:0.54:324
chr8	144998781	rs62642466	C	T	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:255,203:0.44:458
chr8	144999032	rs371126082	G	A	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:184,214:0.54:398
chr8	144999453	rs62642470	C	T	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	145001031	rs55895668	T	C	7678.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr8	145001306	rs113473982	G	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr8	145001512	rs57461687	T	C	11320.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr8	145001617	rs112173070	G	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,137:0.48:288
chr8	145002283	rs11993233	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	145004042	rs11993782	C	A	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr8	145004185	rs78012434	C	T	11795.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr8	145004546	rs11780911	G	A	4782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.178;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:159,235:0.60:394
chr8	145004713	rs142120912	GA	G	2395.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:88,106:0.55:194
chr8	145007409	rs115081018	G	A	5281.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:286,263:0.48:549
chr8	145013515	rs191308779	T	C	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:180,127:0.41:307
chr8	145013572	rs183111586	T	C	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:178,133:0.43:311
chr8	145049512	rs138978753	C	T	4923.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:277,255:0.48:532
chr8	145057868	rs11544989	A	G	13840.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr8	145058539	rs80304851	T	C	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	145066886	rs13277282	A	G	12297.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr8	145094856	rs60729674	C	G	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:253,193:0.43:446
chr8	145106075	rs11989295	C	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr8	145106180	rs28475718	T	C	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:96,76:0.44:172
chr8	145106938	rs60949781	GCC	G	9293.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr8	145107795	rs11136253	G	A	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr8	145109514	rs61743013	G	A	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:237,211:0.47:448
chr8	145109873	rs371475686	TG	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=17.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.543;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr8	145110788	rs115894989	G	A	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:145,103:0.42:248
chr8	145111529	rs11993554	A	G	3259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.567;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:195,160:0.45:355
chr8	145113241	rs3935209	T	G	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:144,112:0.44:256
chr8	145114924	rs7003860	G	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:160,131:0.45:291
chr8	145135114	rs116723461	C	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,110:0.57:194
chr8	145138558	rs116320858	C	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr8	145139522	rs6558295	C	G	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:208,145:0.41:353
chr8	145139727	rs4977165	C	T	8809.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:388,438:0.53:826
chr8	145140472	rs1127096	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:121,87:0.42:208
chr8	145141103	rs113658965	GTC	G	1163.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr8	145141143	rs55750616	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	145149823	rs13256214	G	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.524;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	145149860	rs6984764	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.91;ReadPosRankSum=-1.120;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	145150101	rs11541475	T	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	145150832	rs7820984	A	G	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:138,168:0.55:306
chr8	145151665	rs200379271	TGGCAGTGGGCATGTGGAATACTTCTCC	TCAGTGGGCATGTGGAATACTTCTCC,T	5925.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=343;set=Intersection	GT:AF:DP	0/1:0.50:307
chr8	145151668	.	CAGTGGGCATGTGGAATACTTCTCCA	C	5890.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.669;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=11.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=-0.901;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:155,155:0.50:310
chr8	145151693	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=1;MGOF=6;MMLQ=27;MQ=59.95;NF=29;NR=49;PP=2962;QD=20;SC=ATACTTCTCCACTACCCCCAG;SbPval=0.51;Source=Platypus;TC=165;TCF=61;TCR=104;TR=78;WE=145151701;WS=145151655;set=Platypus	GT:AD:AF:DP	1/0:87,78:0.47:165
chr8	145158446	rs12549149	C	T	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	145158503	rs11136254	G	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	145160646	rs11136256	T	C	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	145161823	rs11546144	G	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	145161896	rs13263342	T	C	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	145162598	rs10091401	G	C	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	145163414	rs4977196	C	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	145163647	rs4977195	T	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr8	145164617	rs13281660	G	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	145164847	rs13250446	A	G	12008.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr8	145168298	rs5895787	T	TG	2029.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	145168611	rs7463214	A	G	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	145168824	rs7836836	T	C	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	145170440	rs12543080	A	C	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	145170704	rs13278106	A	T	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	145171003	rs4977193	G	C	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	145171201	rs1132230	A	G	14620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=-0.632;SOR=0.480;set=HC	GT:AD:AF:DP	1/1:1,564:1.00:565
chr8	145223191	rs6982878	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	145223288	rs34819224	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr8	145223499	rs6558308	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	145234508	rs7842771	G	C	10967.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr8	145245631	rs6558318	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	145245944	rs10108542	A	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	145247168	rs6988451	G	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	145254159	rs7464776	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	145255553	rs6558320	C	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	145268000	rs12114251	G	A	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-1.594;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:100,76:0.43:176
chr8	145268085	rs12114254	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr8	145278052	rs73368449	C	T	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:126,130:0.51:256
chr8	145278163	rs73368454	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr8	145486687	rs7012034	T	C	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.54;QD=33.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	145486699	.	A	ACACCCCTCACCTGCAGGGTGCACCGCCCCCCC	199.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.95;QD=33.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	145512914	rs7836723	C	T	6386.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:266,318:0.54:584
chr8	145535867	rs150889947	G	A	8203.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:306,389:0.56:695
chr8	145536169	rs35680822	C	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	145537219	.	G	C	6418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=2.309;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:426,338:0.44:764
chr8	145537320	.	GCCCCGCCT	G	2974	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=6;HapScore=2;MGOF=41;MMLQ=24;MQ=57.56;NF=9;NR=74;PP=2974;QD=20;SC=GAGCCCCGCCGCCCCGCCTCC;SbPval=0.36;Source=Platypus;TC=109;TCF=10;TCR=99;TR=83;WE=145537335;WS=145537307;set=Platypus	GT:AD:AF:DP	1/0:26,83:0.76:109
chr8	145537325	.	GCCTCCCCGCCCCGCCTCCCCGCGCCTCCCCGCCT	G	3943.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.536;QD=21.67;ReadPosRankSum=0.667;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:80,102:0.56:182
chr8	145537346	.	GCGCCT	G,GCGCCGCCT	1500.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=162;set=Intersection	GT:AF:DP	0/1:0.31:147
chr8	145537354	.	C	G	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=7.025;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=1.154;QD=10.34;ReadPosRankSum=-0.645;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:102,44:0.30:146
chr8	145537374	.	G	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=7.082;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.911;QD=7.28;ReadPosRankSum=1.545;SOR=1.585;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chr8	145537382	.	CCCGCCTCCCCGCG	C	3303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=11.939;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.895;QD=35.15;ReadPosRankSum=-1.554;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:20,74:0.79:94
chr8	145537416	.	G	A	1471	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=85;MMLQ=24;MQ=55.78;NF=19;NR=5;PP=1471;QD=62.7404671895;SC=GCCTCCCCGCGCCGCCTCCCC;SbPval=0.99;Source=Platypus;TC=85;TCF=44;TCR=41;TR=24;WE=145537435;WS=145537378;set=Platypus	GT:AD:AF:DP	0/1:61,24:0.28:85
chr8	145537422	.	T	TCCCCG	1104	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=6;HapScore=1;MGOF=85;MMLQ=24;MQ=56.37;NF=27;NR=34;PP=1104;QD=18.393442623;SC=CCGCGCCGCCTCCCCGCCTCC;SbPval=0.54;Source=Platypus;TC=62;TCF=27;TCR=35;TR=61;WE=145537435;WS=145537378;set=Platypus	GT:AD:AF:DP	0/1:1,61:0.98:62
chr8	145537437	.	GCCGCCTCC	G	3118.73	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:14,78:0.85:92
chr8	145537440	.	GCCT	G	2979	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=1;MGOF=59;MMLQ=24;MQ=57.67;NF=18;NR=44;PP=2979;QD=20;SC=TCCCCGCGCCGCCTCCCCGCC;SbPval=0.76;Source=Platypus;TC=70;TCF=24;TCR=46;TR=62;WE=145537452;WS=145537427;set=Platypus	GT:AD:AF:DP	1/0:8,62:0.89:70
chr8	145557497	rs7013127	A	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	145577290	rs114277466	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr8	145577824	rs880701	C	G	5543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-0.392;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:123,150:0.55:273
chr8	145577829	rs880702	A	C	5477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=0.011;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:118,138:0.54:256
chr8	145577999	rs2272664	T	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.146;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr8	145578296	rs2272663	A	G	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:123,132:0.52:255
chr8	145579949	.	G	GGCCGCT	2948.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.967;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=21.316;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.948;QD=11.52;ReadPosRankSum=0.308;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:173,83:0.32:256
chr8	145579951	.	A	ACC	3013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.832;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=12.239;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.049;QD=11.55;ReadPosRankSum=1.093;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:182,79:0.30:261
chr8	145579954	.	G	GGCACGGCACAAGGGCCCCCACACCTCACGTGCCTGGCCACAACCCAGAACAA	5788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.954;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=7.557;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.139;QD=21.84;ReadPosRankSum=0.244;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:188,77:0.29:265
chr8	145580984	rs2272666	A	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	145581557	rs2280840	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr8	145603114	rs6599528	A	C	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	145603232	rs7007386	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr8	145615776	rs1383095	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	145617253	rs2977837	G	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,98:0.48:206
chr8	145617534	rs148509143	TGGGGGTGCAAGGTGA	T	3996.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	145617629	.	C	CCCCTCCCT	6053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=13.173;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.007;QD=20.11;ReadPosRankSum=2.680;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:150,151:0.50:301
chr8	145617641	rs7813146	T	C	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=4.028;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.415;QD=8.66;ReadPosRankSum=-1.397;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:251,210:0.46:461
chr8	145617910	rs7843675	A	G	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr8	145618154	rs200275320	C	CACCTGTG	3760.73	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:172,174:0.50:346
chr8	145618309	rs1052951	G	A	1977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=10.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.747;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:60,54:0.47:114
chr8	145618312	rs1052952	G	A	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=8.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-1.123;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr8	145618862	rs2272661	C	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr8	145620296	rs2280837	C	G	3744.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:188,187:0.50:375
chr8	145621556	rs2280836	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	145621777	rs113717378	C	T	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:205,153:0.43:358
chr8	145622923	rs2977835	T	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:149,129:0.46:278
chr8	145623098	rs2977834	T	C	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:123,181:0.60:304
chr8	145623378	.	CCCCACCACCGTCCCCACCCACCTACCTCCTTCCAGCAGGCGGATG	C	916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.339;QD=6.74;ReadPosRankSum=-0.577;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:88,48:0.35:136
chr8	145623382	.	A	AGGGCCCAACCACCTCCCCG	2971	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=6;HapScore=2;MGOF=5;MMLQ=28;MQ=58.36;NF=2;NR=13;PP=2971;QD=20;SC=GCGCCTCCCCACCACCGTCCC;SbPval=0.45;Source=Platypus;TC=50;TCF=5;TCR=45;TR=15;WE=145623390;WS=145623372;set=Platypus	GT:AD:AF:DP	0/1:35,15:0.30:50
chr8	145623446	rs56293142	C	G	1508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-1.409;QD=23.95;ReadPosRankSum=-1.091;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:25,38:0.60:63
chr8	145623622	.	C	A	215	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=6;HapScore=2;MGOF=39;MMLQ=23;MQ=54.24;NF=8;NR=6;PP=215;QD=17.8408008962;SC=CCACCTCCCCCCCACCGTCCC;SbPval=0.13;Source=Platypus;TC=24;TCF=18;TCR=6;TR=14;WE=145623630;WS=145623612;set=Platypus	GT:AD:AF:DP	1/0:10,14:0.58:24
chr8	145623881	rs141269368	C	CCCCAGGT	4790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.668;QD=8.97;ReadPosRankSum=1.786;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:306,228:0.43:534
chr8	145623963	rs4317614	G	A	9131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.417;QD=10.51;ReadPosRankSum=-0.402;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:414,455:0.52:869
chr8	145624640	rs2293963	C	T	4678.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:180,224:0.55:404
chr8	145625283	rs2291135	T	C	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.978;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:85,108:0.56:193
chr8	145625524	rs145341443	GCC	G	2522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.479;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=0.052;QD=33.19;ReadPosRankSum=0.668;SOR=0.132;set=HC	GT:AD:AF:DP	1/1:4,72:0.95:76
chr8	145625538	rs141140965	C	G	3107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.018;QD=27.26;ReadPosRankSum=3.580;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:16,98:0.86:114
chr8	145639106	rs2928381	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr8	145639320	rs736676	G	C	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=1.595;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:162,118:0.42:280
chr8	145639521	rs4992316	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	145639586	rs1871535	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	145639654	rs75920625	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr8	145639681	rs1871534	G	C	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr8	145640235	rs7823979	C	T	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:281,203:0.42:484
chr8	145640411	rs2977838	A	G	7083.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr8	145641564	rs2280839	T	G	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=3.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.192;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:202,124:0.38:326
chr8	145641588	rs115637224	A	G	3145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.723;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:207,167:0.45:374
chr8	145642002	rs2280838	C	T	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:112,92:0.45:204
chr8	145649177	rs11558161	G	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr8	145651262	rs2272658	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr8	145651401	rs374076851	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr8	145651622	rs116100627	G	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr8	145652412	.	C	CGG	2405.73	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:90,65:0.42:155
chr8	145654794	rs3862193	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr8	145660833	rs1010427	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:97,68:0.41:165
chr8	145661320	rs2721140	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:88,75:0.46:163
chr8	145661675	rs7830832	G	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr8	145662377	rs2242270	A	C	6702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.520;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:404,354:0.47:758
chr8	145663814	rs13255086	A	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr8	145664018	rs116225577	G	A	4681.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:227,230:0.50:457
chr8	145665407	rs2229315	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:102,73:0.42:175
chr8	145665516	rs2306383	T	C	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr8	145665637	rs2620650	A	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	145665699	rs2721188	C	T	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,64:0.52:124
chr8	145667405	rs2242264	C	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	145668042	rs741969	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:97,94:0.49:191
chr8	145668443	rs760477	G	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr8	145668481	rs2242263	C	T	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:171,188:0.52:359
chr8	145669734	rs116572531	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr8	145677469	rs2245052	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	145677973	rs2256094	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr8	145689915	rs2721167	G	A	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:3,238:0.99:241
chr8	145690308	rs2721166	C	T	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	145690348	rs2620644	G	A	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr8	145690396	rs2620645	A	C	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	145691915	rs112422823	G	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-0.105;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:92,111:0.55:203
chr8	145692110	rs2306388	C	T	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	145692296	rs2250895	A	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	145692385	rs2250891	C	T	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	145692812	rs2250779	C	T	15341.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr8	145693720	rs2250657	A	G	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	145697244	rs4925823	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	145699601	rs2721176	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	145700356	rs80356380	C	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:97,57:0.37:154
chr8	145722485	rs145163729	T	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	145723376	.	C	T	846.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr8	145725448	rs147165392	G	C	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:149,139:0.48:288
chr8	145729959	rs112827945	C	T	4568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-0.982;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:373,246:0.40:619
chr8	145730055	rs116684584	G	A	10610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=913;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.108;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:398,503:0.56:901
chr8	145734651	rs112382734	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=2.241;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr8	145736101	rs34730139	G	A	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:201,146:0.42:347
chr8	145737490	rs34482062	G	A	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:108,83:0.43:191
chr8	145737636	rs4925828	A	G	17429.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr8	145738581	rs67678060	TG	T	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.364;QD=4.22;ReadPosRankSum=-1.605;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr8	145738767	rs11342077	CG	C	29971.73	.	AC=2;AF=1.00;AN=2;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.28;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,804:1.00:804
chr8	145739196	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=0.934;QD=6.27;ReadPosRankSum=-0.443;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr8	145739205	rs4925829	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.868;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=0.775;QD=7.11;ReadPosRankSum=-1.441;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr8	145739218	.	A	G	383	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=4;MGOF=30;MMLQ=26;MQ=51.42;NF=4;NR=17;PP=383;QD=19.8938672642;SC=GGGGAGTGAGAAGGGGTCGGC;SbPval=0.94;Source=Platypus;TC=29;TCF=10;TCR=19;TR=21;WE=145739226;WS=145739194;set=Platypus	GT:AD:AF:DP	1/1:8,21:0.72:29
chr8	145740510	rs35071981	C	G	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:165,125:0.43:290
chr8	145742038	rs116137512	G	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:79,63:0.44:142
chr8	145742514	rs2721190	A	G	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	145742716	rs2721189	C	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	145742879	rs2306386	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr8	145745182	rs2721172	T	C	13434.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:1,513:1.00:514
chr8	145746099	rs79312814	C	T	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:250,229:0.48:479
chr8	145746920	rs200351812	CT	C	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr8	145748187	rs111410088	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr8	145748360	rs141989296	G	C	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.839;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr8	145748852	rs113823213	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr8	145750072	rs80106055	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr8	145750138	rs2721138	T	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.774;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr8	145750298	.	C	T	498.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr8	145753271	rs2721143	T	C	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=1.911;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:71,91:0.56:162
chr8	145753584	rs2721144	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr8	145754001	rs202133968	GCCCA	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.41;ReadPosRankSum=-0.615;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	145754052	rs2721145	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	145754067	rs2721146	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.517;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	145754073	.	GCC	G	442.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr8	145754187	rs115228909	C	G	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.198;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:139,86:0.38:225
chr8	145758467	rs2620641	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr8	145758778	rs115224928	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr8	145759598	rs2620642	A	T	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.315;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:338,267:0.44:605
chr8	145763012	rs112200720	A	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr8	145770553	rs2620643	A	G	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr8	145771211	rs2721161	C	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	145781088	rs11984646	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr8	145806154	rs34194127	AC	A	747.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr8	145806681	rs2620647	A	G	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	145830757	rs4541972	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	145830894	rs5895822	CT	C	11813.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	145998499	rs113442835	TTTTGA	T	604.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	145999080	rs7845196	G	A	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr8	146014998	rs113314702	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-0.000;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	146015390	rs113303499	A	AC	4146.73	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:191,166:0.46:357
chr8	146015401	rs111990102	C	T	3223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.512;QD=9.11;ReadPosRankSum=0.101;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:189,165:0.47:354
chr8	146015431	rs111365394	A	G	4686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.522;QD=17.49;ReadPosRankSum=-0.835;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:144,124:0.46:268
chr8	146015437	rs112321400	G	C	4694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.497;QD=18.27;ReadPosRankSum=-1.335;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:136,121:0.47:257
chr8	146015481	rs113185948	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr8	146015749	rs1060859	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr8	146015863	rs149933289	G	GGA	7423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=926;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.160;QD=8.22;ReadPosRankSum=3.054;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:517,386:0.43:903
chr8	146015986	rs112562770	T	C	4607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.405;QD=8.91;ReadPosRankSum=0.690;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:289,228:0.44:517
chr8	146016322	rs112419185	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr8	146016359	rs111938634	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr8	146028061	rs2958527	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	146033347	rs2976653	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr8	146033654	rs78918664	A	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:170,133:0.44:303
chr8	146036234	rs2958511	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	146063441	rs34966207	GC	G	2362.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:155,101:0.39:256
chr8	146067054	rs1735169	G	A	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:112,88:0.44:200
chr8	146068322	rs9004	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr8	146068594	rs1735408	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	146105917	rs1209850	A	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr8	146115367	rs2735906	A	G	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr8	146202386	rs3866997	A	C	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:80,96:0.55:176
chr8	146202422	rs3866998	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:64,67:0.51:131
chr8	146203346	rs12678688	T	G	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:139,125:0.47:264
chr8	146203412	rs2979109	A	G	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr8	146218441	rs6599548	C	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	146218509	rs6599549	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	146219931	rs13438994	C	G	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:153,105:0.41:258
chr8	146220011	rs13439873	G	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	146220446	rs4489360	G	A	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr8	146221823	rs2978409	A	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	146221893	rs4302882	A	G	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	146222122	rs2978441	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	146225112	rs2272714	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr8	146228390	rs2294042	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	146228622	rs2294043	C	A	22310.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=1.009;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:4,868:1.00:872
chr8	146228790	rs115055201	T	G	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:219,202:0.48:421
chr8	146278312	rs146457143	GGAATCCACGGGTGC	G	3810.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:164,104:0.39:268
chr9	214864	rs2236547	C	T	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr9	214908	rs62533313	T	C	9774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=3.198;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=0.891;SOR=0.369;set=HC	GT:AD:AF:DP	1/1:1,377:1.00:378
chr9	215057	rs481905	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	271638	rs506121	C	T	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	286593	rs529208	C	A	3542.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=-1.009;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr9	325811	rs3831138	T	TC	2416.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	325817	rs2360277	T	C	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	327938	rs2296825	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	327957	rs2296826	T	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	328006	rs2296828	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	368030	rs10972587	T	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	368288	rs12115371	GT	AC	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	379965	rs10758420	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	380035	rs11790531	G	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	386556	rs7862253	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	399275	rs3831174	A	AC	1412.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	406805	rs35423045	G	GC	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	414698	rs16938432	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	417918	rs7024113	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	417990	rs7027996	T	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	418003	rs10814836	T	C	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	418272	rs7031432	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	421980	rs2297081	T	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	422157	rs10217719	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	426740	rs10974366	G	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	429577	rs10974393	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	429719	rs7854035	T	C	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	429940	rs16906738	T	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	432081	rs1329377	T	C	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	432140	rs34439675	CTT	C	569.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.734;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr9	432330	rs7036567	C	G	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	432396	rs10974401	A	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	432503	rs7046598	T	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	433697	rs7020380	T	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	433708	rs7041371	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	433978	rs2360712	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	434897	rs35662752	C	T	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr9	439102	rs10733508	G	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	441827	rs10974467	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	441952	rs1887957	G	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	442030	rs1887958	C	T	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	449798	rs10491684	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	449956	rs12351520	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	450060	rs10121936	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	676820	rs1570474	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	712137	rs912175	G	C	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	712156	rs912174	T	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	712421	rs144666000	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	712674	rs79835909	C	T	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	712766	rs3824420	G	A	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	713307	rs4742277	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	735654	rs7872783	C	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	738238	rs2296052	G	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	740769	.	C	CT,CTT	1802.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.948;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.152;SOR=0.900;set=HC	GT:AD:AF:DP	1/2:25,36,72:0.27,0.54:133
chr9	740972	rs7032867	G	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	742342	rs10733535	A	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	744737	rs73376636	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	842230	.	G	GTTTTTT	303.73	.	AC=1;AF=0.500;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.31;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr9	842315	rs56130013	AC	A	109	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	846925	rs116726483	G	A	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	967981	rs279895	G	C	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	977312	rs148355218	T	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	977556	rs279891	C	A	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	989868	rs75785779	G	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	989943	rs6477419	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	2039983	rs10964528	A	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	2060797	rs141618610	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.91;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	2073514	rs7864080	A	T	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	2073708	rs12350115	G	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	2073839	rs2066111	C	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	2088703	rs73389127	A	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	2097548	rs60293281	GA	G	139.70	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr9	2103950	rs1986592	T	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	2116037	rs6601	G	A	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	2116153	rs7048082	A	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr9	2123639	rs3829070	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	2159933	.	T	C	4000.77	.	AC=2;AF=1.00;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	2182062	rs2281786	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	2622121	rs12379259	A	G	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	2639745	rs35464166	T	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	2644002	rs10967320	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	2645719	rs6143	C	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	2650264	rs35730767	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	2651340	rs35769682	A	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	2651427	.	C	T	3836.77	.	AC=2;AF=1.00;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	2652647	rs78532680	C	G	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	2652998	rs78722451	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	2653692	rs76021934	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	2653708	rs144675398	T	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	2653710	.	ACT	A	1717.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.43;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	2653713	.	T	G	1726.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	2653715	.	T	G	1726.77	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	2653719	.	C	A	1771.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	2653720	rs189451931	T	G	1771.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	2653723	rs200009129	G	GAA	2032.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.82;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	2653724	.	C	A	2041.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	2653726	.	C	G	2028.77	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	2653729	rs148182787	T	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	2653773	rs140107261	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	2717698	rs7029012	C	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	2717922	rs10967705	C	G	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	2718717	rs7860945	C	T	6609.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	2729686	rs12352254	C	G	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	2811505	rs2270888	G	A	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	2828765	rs2173904	C	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	2831149	rs2292000	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	2833267	rs10217194	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	3247768	rs76378105	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	3247951	rs2229356	C	T	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	3256906	rs113462937	T	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	3275718	rs78075838	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	3324206	rs2274487	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	3330173	rs7028451	G	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	3344830	rs76210876	G	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	3344954	rs3012670	C	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	3346849	rs77016743	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr9	3395400	rs141539426	TG	T	1696.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.865;MLEAC=2;MLEAF=1.000;MQ=60.56;MQRankSum=0.317;QD=30.30;ReadPosRankSum=-0.681;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	3469357	rs1970534	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	3879394	rs188442216	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	3937255	rs676935	T	A	333.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.935;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=1.800;SOR=0.191;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr9	3937288	rs10974212	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	4118111	rs6415788	G	T	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr9	4118208	rs806052	A	G	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr9	4118352	rs76342955	G	A	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	4119049	rs13301186	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	4126053	.	AT	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.315;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr9	4298365	rs193116478	A	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	4298537	rs12340657	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	4298576	rs12350099	C	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	4490880	rs12002726	T	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	4544624	rs2228621	T	A	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr9	4561374	rs10974624	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	4561596	rs10974625	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	4561651	rs1805311	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	4566210	rs7022772	A	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	4576487	rs151159472	T	C	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	4576680	rs301430	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	4576774	rs1471786	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	4662369	rs301487	A	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	4666069	rs60279350	A	ATCTT	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	4679906	rs2295964	A	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	4680014	rs2295965	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	4688757	.	A	ATT	23	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=0.9996;HP=14;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=23;QD=13.5;SC=TTGTTTTAGAATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=4688765;WS=4688747;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr9	4688797	rs2181340	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	4701841	.	GT	G	42	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.6047;HP=14;HapScore=2;MGOF=118;MMLQ=17;MQ=60.0;NF=2;NR=1;PP=42;QD=17.0;SC=CACAGTCTTTGTTTTTTTTTT;SbPval=0.27;Source=Platypus;TC=6;TCF=2;TCR=4;TR=3;WE=4701849;WS=4701831;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr9	4706214	rs2181341	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	4834291	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=2.642;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr9	4844459	rs159432	G	A	463.94	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	4844507	rs295259	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	4850141	rs12375841	T	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	4850421	rs455864	C	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.09;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	4850431	rs10974810	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	4860300	rs15583	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	5050706	rs2230722	C	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	5069837	rs7869668	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	5081780	rs2230724	G	A	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	5090641	rs10974955	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	5122932	rs10815163	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	5231712	rs12720	T	A	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	5335470	rs2273782	C	T	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	5335639	rs2146074	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	5358505	rs10125658	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	5465409	rs377767078	A	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	5467955	rs2297136	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	5557672	rs7854303	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	5557708	rs7854413	T	C	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	5656558	.	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.812;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr9	5732532	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.314;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr9	5923326	rs7045445	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	5929167	rs7029054	T	C	1332.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.59;ReadPosRankSum=-0.692;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr9	5968416	rs3739649	A	G	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	5969249	rs10739080	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	5969517	rs7030731	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	5988333	rs2291055	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:5,60:0.92:65
chr9	6254694	rs7857724	A	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	6255881	rs1332290	T	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr9	6328947	rs3847262	T	C	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	6330915	rs1037885	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	6553445	rs141933811	C	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	6591972	rs62568998	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	6875085	rs60286758	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	6986267	rs912207	T	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	6986291	rs3750488	C	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	6990548	rs35634202	ATT	A	1717.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.536;QD=21.21;ReadPosRankSum=-0.438;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:9,72:0.89:81
chr9	7016001	rs818883	G	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	7076371	rs1570511	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	7076463	rs1570512	G	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	7076586	rs1570513	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	7105548	rs10758825	G	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	7105651	rs1407863	C	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	7170006	rs7022348	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	7798435	rs1254	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	7798518	rs4742410	G	C	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	8338778	rs35311961	T	TA	76.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	8338847	rs143960430	C	CAGAGAGAGAGAGAG,CAGAGAGAGAGAGAGAG,CAGAGAGAGAGAG	1558.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	1/2:0.47,0.53:36
chr9	8340168	rs4742483	C	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	8436703	rs1359118	C	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	8451755	rs10977117	T	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	8451816	rs4742505	TT	AC	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	8454566	rs7031287	T	C	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	8525217	rs35751005	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.771;QD=1.06;ReadPosRankSum=0.649;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr9	12775861	.	T	TGGTGGC	4145.73	.	AC=2;AF=1.00;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	1/1:13,174:0.93:187
chr9	12775894	rs75227666	C	T	5016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.462;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.093;QD=24.59;ReadPosRankSum=0.297;SOR=1.898;set=HC	GT:AD:AF:DP	1/1:1,203:1.00:204
chr9	13109111	rs10732331	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	13112116	rs10809904	A	G	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	13115422	rs2274647	T	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	13136564	rs10809908	A	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=24.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	13147723	rs7024892	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	13147764	rs10809911	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	13150531	rs10756457	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	13175987	rs1331674	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	13176312	rs2274856	C	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	13183464	rs34776397	C	T	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	13192320	rs1331676	C	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	13206106	.	T	TA	1031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.736;QD=9.73;ReadPosRankSum=4.296;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:35,71:0.67:106
chr9	13222484	rs73408219	A	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	13408266	rs11999222	G	A	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	13928011	rs2382426	T	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr9	13928028	rs2382427	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	14102636	rs56666602	G	GA	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.335;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr9	14120655	rs6474818	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	14155711	rs35911295	T	TAA	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	14179894	rs10125399	A	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	14306944	rs4741362	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	14313712	rs2273933	T	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	14555561	rs16931964	C	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	14619168	rs10810187	A	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	14640055	rs6474849	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	14662410	rs7036630	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	14690419	rs10961672	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	14690423	rs75806391	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	14690447	rs2382477	G	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	14722151	rs1494357	C	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	14722477	rs3747532	G	C	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	14737506	rs10961689	T	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	14737616	rs10961690	A	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	14737634	rs77892240	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	14737743	rs10511596	C	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	14740300	rs2270528	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	14756327	rs78753998	A	C	5065.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=24.47;ReadPosRankSum=-1.072;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,206:1.00:207
chr9	14759725	rs7045154	A	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	14759940	rs78519283	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	14774329	rs7018782	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	14775853	rs1032474	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	14819420	rs61745880	T	C	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	14846036	rs2779500	C	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	14846122	rs2642404	C	G	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	14857740	rs950739	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	14863863	rs61740262	A	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	14868653	rs7856810	A	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	14868931	rs61747529	C	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr9	15177611	rs2800590	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	15190494	rs475932	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	15192720	rs566820	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	15199813	rs41265314	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	15210198	.	G	GA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.351;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr9	15447361	rs3830477	A	AACT	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	15453138	rs34346482	G	A	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	15457853	rs10756669	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	15468174	rs2795124	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	15473926	.	AAAAAAAAAAC	A	515.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.25;QD=39.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	15478331	rs16933311	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	15486958	rs2737828	A	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.93;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	15564230	rs76970866	G	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	15571630	rs443563	T	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	15578890	rs115940611	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	15623462	rs405352	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	15623473	.	G	GCACACACACACA	262.79	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	15784631	rs1539172	A	G	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	15864718	rs114146050	G	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	16215126	rs143203170	T	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	16419666	rs144257997	A	AG	203.75	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	16431230	rs9298764	A	G	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	16582890	rs149223772	G	GAC	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.953;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr9	16664871	rs35822374	T	TG	125	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	16685539	rs7046068	T	C	7645.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	16727698	rs1360285	G	A	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	16738403	rs76485966	T	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	17235642	rs67017076	AT	A	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	17309336	rs10756860	T	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	17332484	rs3084508	ATT	A	982.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=8.071;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=-0.491;SOR=2.382;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr9	17342383	rs1442527	C	T	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	17342517	rs10756869	A	G	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	17366568	rs4961548	A	T	228.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	17394536	rs7035276	C	T	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	17394996	rs3739489	T	C	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	17395108	rs3739488	C	T	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	17409366	rs2780211	G	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	17409556	rs2584549	C	T	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	17457512	rs35399020	TA	T	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.80;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	17464479	.	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.624;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	17486984	rs2383023	C	T	361.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	17486992	rs62639687	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	17494874	.	CTT	C	55.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=0.652;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr9	17494896	.	TG	T	46	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=20;HapScore=2;MGOF=33;MMLQ=27;MQ=57.41;NF=2;NR=2;PP=46;QD=12.25;SC=TTTTTTTTTTTGGTCACAGAG;SbPval=0.42;Source=Platypus;TC=6;TCF=2;TCR=4;TR=4;WE=17494904;WS=17494886;set=Platypus	GT:AD:AF:DP	0/1:2,4:0.67:6
chr9	17494911	rs2499057	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	17494947	rs2499058	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	17579163	rs112820965	C	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	17579190	rs4961573	C	G	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	17579198	rs4961574	T	G	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	17747173	rs3780226	C	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	17775367	rs2209429	C	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	17781682	rs115984338	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	17781810	rs9407871	G	A	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	17791442	rs9407877	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	18639318	rs139268331	T	C	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	18706649	rs74754832	G	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	18717903	rs530120	G	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	18718114	rs4977339	A	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	18718139	rs532101	C	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	18776840	rs1549986	A	C	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	18777196	rs41268983	A	C	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr9	18777368	rs7033684	T	C	9297.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr9	18777422	rs45579937	G	A	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	18817246	rs1433809	A	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	18817372	rs7873880	C	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	18826261	rs35525189	GT	G	1229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.445;QD=12.42;ReadPosRankSum=0.394;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:18,81:0.82:99
chr9	18826500	rs934469	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	18830087	rs7026429	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	19326053	rs2256093	G	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	19336169	.	G	GTATATATATA,GTATATATATATA,GTATATATA	368.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=9;set=Intersection	GT:AF:DP	1/2:0.56,0.44:9
chr9	19341045	rs928128	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	19347204	rs2666801	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	19350980	rs2803125	C	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	19357276	rs10667709	C	CTTA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	19369777	rs368821074	AT	A	42.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.849;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr9	19369778	rs10964112	T	A	291.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.073;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr9	19372275	rs41270105	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	19516090	rs3739481	C	G	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	19550308	rs4977555	A	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	19573483	rs149743267	AACACACACACACACACACACACACAC	A	379.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	19576815	rs2247818	C	T	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	19576816	rs56172301	GGT	G	98.25	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	19576949	rs2383101	T	G	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	19619509	rs1885220	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	19622072	rs4977307	A	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	19622268	rs4977308	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	19786217	rs1536517	G	A	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr9	20354693	rs2301549	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	20354747	rs73648204	C	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	20354796	rs2301550	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	20502096	rs6475450	G	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	20620908	rs146426654	A	AT	2686.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr9	20621901	rs376536186	CGT	C	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.028;QD=3.57;ReadPosRankSum=0.501;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:148,35:0.19:183
chr9	20622069	rs148025878	G	GT	1090.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.62;QD=36.36;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	20720599	rs4977898	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	20740355	rs57561334	G	GT	252.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	20765097	rs7871811	A	G	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	20769987	rs7860490	G	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	20778631	rs7875153	A	G	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	20781979	rs6475473	C	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	20862506	rs4977779	G	A	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	20862515	rs4977780	A	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.31;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	20866974	rs7875872	C	G	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	20882117	rs7026225	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	20885240	rs2383156	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	20916828	rs4977812	A	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	20923579	rs7044452	C	T	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	20923618	rs7044447	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	20946952	rs7851042	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	20976298	rs10119918	C	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	20978312	rs4977616	A	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	20982503	rs4304410	T	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	20988426	rs4977881	A	G	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	21007935	rs7041474	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	21031479	.	C	T	140	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=5;NR=3;PP=140;QD=21.8464015684;SC=GCCCGCCCGCCGCAGAGGGGA;SbPval=0.62;Source=Platypus;TC=8;TCF=5;TCR=3;TR=8;WE=21031487;WS=21031469;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	21409036	.	G	GA	475.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	21440490	rs55821508	T	C	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	21440994	rs33965070	C	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.05;QD=28.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	21441092	rs28383795	GA	G	5285.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	23705108	rs10966032	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	24545513	rs6475797	G	A	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	25677953	rs34498078	T	C	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	26101538	rs202131415	C	G	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=0.349;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	26101539	rs144657945	T	C	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=-0.311;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	26116016	rs10116592	G	A	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	26116150	rs7019716	G	T	10780.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.748;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=3.109;SOR=0.153;set=HC	GT:AD:AF:DP	1/1:2,415:1.00:417
chr9	26982270	rs57511456	CT	C	748.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr9	26982449	rs56756518	AT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.333;QD=4.43;ReadPosRankSum=2.210;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	27047246	rs10812520	T	C	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	27061142	rs34615635	GGT	G	430.27	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr9	27168315	rs10511802	G	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	27168433	rs12349832	A	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	27172838	rs3739542	C	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	27173180	rs666478	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	27183463	rs682632	A	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	27228022	rs2273717	A	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	27289812	rs1980661	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	27289832	rs1980660	G	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	27290933	rs4878394	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	27290984	rs2383724	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	27292529	rs41272857	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	27296595	rs7044345	C	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	27297260	rs7875090	A	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	27455585	rs10757661	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27524731	rs700785	A	G	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	27556780	rs10122902	G	A	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	27561465	rs3063748	A	ATGT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	27562293	rs10812616	T	A	108.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	27562352	rs2589050	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	28863459	rs13285849	A	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	32384843	rs913762	A	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	32427600	rs2375965	A	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	32472895	rs10813823	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	32481525	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=0.431;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr9	32498291	rs2777725	A	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	32552172	rs35415231	CA	C	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.340;SOR=2.009;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr9	32634837	rs141107032	G	A	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	32973709	.	CAA	C,CA	516.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.347;SOR=0.293;set=HC	GT:AD:AF:DP	1/2:1,17,12:0.57,0.40:30
chr9	32974372	rs4878522	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	32974570	rs34600530	G	GA	278.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	33001441	rs10813920	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	33001449	rs1197774	C	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	33026572	rs20583	T	C	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	33069062	rs10971383	G	A	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	33116238	rs34433922	AT	A	693.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.695;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.354;QD=18.26;ReadPosRankSum=0.000;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr9	33240165	rs555445	G	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	33240225	rs706107	G	A	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	33254923	rs10121459	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	33255743	rs706117	A	G	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=4.430;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	33256024	rs59088018	C	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	33256809	.	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	33261969	rs28655530	C	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	33262075	rs12340788	G	A	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	33264540	rs1071545	C	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	33265187	rs181826784	C	T	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	33270748	rs831271	G	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	33280749	.	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.745;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr9	33290532	rs830576	A	G	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	33344252	rs642157	T	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	33366644	rs75181385	A	G	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	33385600	rs117066088	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-3.678;QD=7.38;ReadPosRankSum=2.350;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr9	33385602	rs145413647	A	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-3.787;QD=7.07;ReadPosRankSum=2.436;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr9	33385603	rs140943510	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-3.787;QD=7.07;ReadPosRankSum=2.470;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr9	33385690	rs139024279	G	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-7.531;QD=1.38;ReadPosRankSum=-0.372;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:86,10:0.10:96
chr9	33385698	rs145516206	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-8.381;QD=1.13;ReadPosRankSum=-1.656;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:92,10:0.10:102
chr9	33386144	.	G	A	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-10.709;QD=9.30;ReadPosRankSum=-3.072;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:113,39:0.26:152
chr9	33386144	.	GAC	AAA	865	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=16;MQ=56.59;NF=19;NR=9;PP=865;QD=32.8024241022;SC=CAGCTGTAGCGACGGGACCGG;SbPval=0.76;Source=Platypus;TC=86;TCF=53;TCR=33;TR=28;WE=33386154;WS=33386134;set=Platypus	GT:AD:AF:DP	1/0:58,28:0.33:86
chr9	33386146	rs76608797	C	A	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-10.224;QD=8.78;ReadPosRankSum=-4.176;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:114,46:0.29:160
chr9	33386167	rs79172651	G	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:152,71:0.32:223
chr9	33386211	rs80148578	G	A	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-8.354;QD=6.10;ReadPosRankSum=3.828;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:183,107:0.37:290
chr9	33386226	rs78244036	T	C	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-8.546;QD=6.88;ReadPosRankSum=3.624;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:164,110:0.40:274
chr9	33386243	rs76705820	C	T	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-7.512;QD=8.07;ReadPosRankSum=1.945;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:133,109:0.45:242
chr9	33386284	rs73478964	T	G	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr9	33386378	rs74462413	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-4.488;QD=2.76;ReadPosRankSum=0.611;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr9	33386387	rs77429065	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-5.490;QD=1.98;ReadPosRankSum=0.337;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:82,11:0.12:93
chr9	33386393	rs77837642	G	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-5.628;QD=1.72;ReadPosRankSum=0.527;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:87,11:0.11:98
chr9	33386395	rs2484931	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	33386399	.	CA	TG	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.231;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-5.625;QD=1.45;ReadPosRankSum=0.254;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:93,11:0.11:104
chr9	33386465	rs74668961	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.262;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-10.438;QD=2.36;ReadPosRankSum=-2.457;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:139,20:0.13:159
chr9	33386469	rs78695486	C	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-11.123;QD=2.09;ReadPosRankSum=-2.493;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:146,23:0.14:169
chr9	33386510	rs77962308	CA	TG	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	0/1:131,30:0.19:161
chr9	33386526	rs79202054	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.857;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-9.575;QD=2.88;ReadPosRankSum=3.998;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:106,30:0.22:136
chr9	33395031	rs72707429	G	A	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=28.763;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-4.300;QD=7.92;ReadPosRankSum=2.007;SOR=4.057;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr9	33395039	rs72707431	C	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=34.390;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-4.474;QD=7.26;ReadPosRankSum=2.058;SOR=4.339;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr9	33395196	rs642636	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	33441702	.	A	AC	656.76	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	33441725	.	CTGCACACACATGCACACACA	C	820.73	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr9	33442952	rs2228332	G	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	33442986	rs2231231	A	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	33447306	rs517210	C	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	33447424	rs591810	C	G	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	33447579	rs17553719	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	33463451	rs72019543	GAGA	G	4008.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	33463848	rs115548117	C	T	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	33465182	rs2785210	G	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	33465651	rs560833	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	33466769	rs115232700	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	33466859	rs507758	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr9	33467614	rs501213	T	C	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	33467983	rs679644	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	33468728	rs2777748	T	C	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	33469191	rs2777747	C	T	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	33469406	rs2777746	C	T	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	33473893	rs2777744	T	G	9022.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr9	33524684	rs3843933	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	33524725	rs3843934	G	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	33558025	rs34748833	T	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	33624357	rs7865060	C	T	5859.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;MQRankSum=5.842;QD=25.37;ReadPosRankSum=-0.388;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:2,229:0.99:231
chr9	33624622	rs150567876	CAT	C	8782.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	33794749	.	C	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-11.756;QD=1.10;ReadPosRankSum=-2.549;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:143,15:0.09:158
chr9	33794753	.	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.134;QD=1.25;ReadPosRankSum=-2.190;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:159,17:0.10:176
chr9	33794789	.	G	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-7.787;QD=2.89;ReadPosRankSum=-3.240;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:207,32:0.13:239
chr9	33794797	.	TGA	T	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=5.138;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-9.567;QD=4.16;ReadPosRankSum=-0.340;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:197,41:0.17:238
chr9	33794809	rs201061108	G	A	2655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-14.014;QD=10.29;ReadPosRankSum=1.443;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:180,78:0.30:258
chr9	33794811	.	GG	AT	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=1.449;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-8.079;QD=2.67;ReadPosRankSum=0.327;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:222,34:0.13:256
chr9	33794840	rs10117993	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:235,99:0.30:334
chr9	33794877	.	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-8.239;QD=2.55;ReadPosRankSum=2.894;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:256,77:0.23:333
chr9	33794890	.	T	A	2704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-9.542;QD=8.45;ReadPosRankSum=3.409;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:229,91:0.28:320
chr9	33794894	.	T	C	3427.77	.	AC=1;AF=0.500;AN=2;DP=310;set=Intersection	GT:AD:AF:DP	0/1:188,118:0.39:306
chr9	33794903	.	TCTTTGAAACA	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=80;MMLQ=27;MQ=53.03;NF=4;NR=26;PP=2954;QD=20;SC=GTCCCCTCCTTCTTTGAAACA;SbPval=0.3;Source=Platypus;TC=88;TCF=8;TCR=80;TR=30;WE=33794920;WS=33794867;set=Platypus	GT:AD:AF:DP	1/0:58,30:0.34:88
chr9	33794923	.	CTT	C	2672.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:118,73:0.38:191
chr9	33794926	.	T	C	62.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-5.948;QD=0.33;ReadPosRankSum=-2.259;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:178,15:0.08:193
chr9	33794927	.	T	C	2005.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	0/1:131,58:0.31:189
chr9	33794929	.	A	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.264;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-5.862;QD=0.42;ReadPosRankSum=-2.361;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:171,14:0.08:185
chr9	33794933	.	T	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-5.473;QD=0.40;ReadPosRankSum=-2.677;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:154,12:0.07:166
chr9	33794975	.	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=7.542;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-6.844;QD=1.57;ReadPosRankSum=-0.971;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr9	33794981	.	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=7.723;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-6.617;QD=2.43;ReadPosRankSum=-2.955;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr9	33795004	.	T	C	73	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=35;MMLQ=27;MQ=56.08;NF=0;NR=6;PP=73;QD=17.9618687579;SC=CCTTACCCCTTAGTGTTGGAA;SbPval=1.0;Source=Platypus;TC=25;TCF=5;TCR=20;TR=6;WE=33795012;WS=33794994;set=Platypus	GT:AD:AF:DP	1/0:19,6:0.24:25
chr9	33795579	.	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DP=557;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-20.548;QD=0.45;ReadPosRankSum=-5.814;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:515,39:0.07:554
chr9	33795581	.	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.461;ClippingRankSum=0.000;DP=567;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-21.053;QD=0.72;ReadPosRankSum=-5.970;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:520,44:0.08:564
chr9	33795583	.	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DP=565;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-21.224;QD=1.44;ReadPosRankSum=-6.302;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:514,48:0.09:562
chr9	33795593	rs201140357	G	A	2133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-21.553;QD=3.44;ReadPosRankSum=-6.444;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:545,76:0.12:621
chr9	33795601	.	G	T	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DP=661;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-23.031;QD=4.41;ReadPosRankSum=-7.365;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:552,106:0.16:658
chr9	33795603	.	G	C	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DP=673;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-23.040;QD=4.47;ReadPosRankSum=-7.043;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:559,111:0.17:670
chr9	33795613	.	C	T	3447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;ClippingRankSum=0.000;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-23.994;QD=4.84;ReadPosRankSum=-3.964;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:590,123:0.17:713
chr9	33795622	.	T	C	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DP=774;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-24.637;QD=1.54;ReadPosRankSum=-0.850;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:634,137:0.18:771
chr9	33795624	.	A	C	3931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DP=779;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-24.590;QD=5.07;ReadPosRankSum=-0.419;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:635,141:0.18:776
chr9	33795638	.	C	T	4430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.282;ClippingRankSum=0.000;DP=833;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-24.801;QD=5.34;ReadPosRankSum=4.222;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:675,155:0.19:830
chr9	33795640	.	ACCC	A	4409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DP=836;ExcessHet=3.0103;FS=4.460;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-24.850;QD=5.29;ReadPosRankSum=4.911;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:678,155:0.19:833
chr9	33795646	.	C	CAA	4861.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DP=819;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-24.756;QD=5.95;ReadPosRankSum=5.477;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:662,155:0.19:817
chr9	33795652	.	T	C	4943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DP=823;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-24.339;QD=6.02;ReadPosRankSum=4.342;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:645,176:0.21:821
chr9	33795703	rs370216620	C	T	5146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-22.180;QD=9.17;ReadPosRankSum=-1.687;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:403,158:0.28:561
chr9	33795707	rs373461727	C	G	4998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-21.510;QD=9.50;ReadPosRankSum=-1.233;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:381,145:0.28:526
chr9	33795731	.	A	G	2915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-18.077;QD=8.50;ReadPosRankSum=-1.673;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:252,91:0.27:343
chr9	33795735	.	A	T	2874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.728;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-17.590;QD=8.98;ReadPosRankSum=-1.519;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:236,84:0.26:320
chr9	33795739	.	C	T	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-16.802;QD=8.16;ReadPosRankSum=-0.443;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:223,73:0.25:296
chr9	33795762	.	C	T	925.77	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:135,44:0.25:179
chr9	33795775	.	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-10.122;QD=6.94;ReadPosRankSum=2.582;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr9	33796734	.	C	A	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=19.010;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-18.751;QD=3.42;ReadPosRankSum=-4.435;SOR=1.705;set=HC	GT:AD:AF:DP	0/1:300,56:0.16:356
chr9	33796744	rs151156335	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-14.185;QD=1.55;ReadPosRankSum=-0.835;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:361,42:0.10:403
chr9	33796746	.	G	T	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-14.097;QD=1.93;ReadPosRankSum=-0.354;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:367,42:0.10:409
chr9	33796758	.	T	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-14.441;QD=1.94;ReadPosRankSum=0.568;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:381,48:0.11:429
chr9	33796762	.	C	G	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-14.388;QD=1.92;ReadPosRankSum=1.114;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:389,49:0.11:438
chr9	33796766	.	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-14.457;QD=1.85;ReadPosRankSum=1.676;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:393,49:0.11:442
chr9	33796777	rs368576294	A	G	3719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-19.087;QD=8.36;ReadPosRankSum=0.919;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:333,112:0.25:445
chr9	33796785	rs199600414	C	G	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-10.183;QD=3.37;ReadPosRankSum=1.489;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:374,64:0.15:438
chr9	33796799	rs200709040	A	T	2925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-17.598;QD=7.26;ReadPosRankSum=5.018;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:289,114:0.28:403
chr9	33796801	rs143707562	G	A	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-13.020;QD=1.96;ReadPosRankSum=2.353;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:353,45:0.11:398
chr9	33796827	rs375097863	G	A	1904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=13.302;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-11.060;QD=5.92;ReadPosRankSum=5.354;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:231,91:0.28:322
chr9	33796845	.	T	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-8.634;QD=0.21;ReadPosRankSum=-0.984;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:229,34:0.13:263
chr9	33796858	rs369633136	C	A	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.917;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=9.785;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-6.695;QD=4.57;ReadPosRankSum=2.789;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:157,71:0.31:228
chr9	33796889	.	A	G	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.771;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-4.159;QD=12.26;ReadPosRankSum=-0.020;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:73,43:0.37:116
chr9	33796896	.	T	C	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.548;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-3.147;QD=13.15;ReadPosRankSum=0.414;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:63,35:0.36:98
chr9	33796898	.	G	A	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.559;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-2.325;QD=13.61;ReadPosRankSum=1.187;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr9	33796904	.	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-2.174;QD=12.31;ReadPosRankSum=0.532;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:52,28:0.35:80
chr9	33797861	rs151192741	A	G	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:215,121:0.36:336
chr9	33797881	rs372122039	G	A	8888.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:394,280:0.42:674
chr9	33797917	.	T	C	24762.77	.	AC=1;AF=0.500;AN=2;DP=1257;set=Intersection	GT:AD:AF:DP	0/1:641,613:0.49:1254
chr9	33797928	.	G	GCC	24924.73	.	AC=1;AF=0.500;AN=2;DP=1398;set=Intersection	GT:AD:AF:DP	0/1:690,704:0.51:1394
chr9	33797930	.	GAC	G	31818.73	.	AC=1;AF=0.500;AN=2;DP=1450;set=Intersection	GT:AD:AF:DP	0/1:717,729:0.50:1446
chr9	33797951	rs150316320	A	C	38338.77	.	AC=1;AF=0.500;AN=2;DB;DP=1757;set=Intersection	GT:AD:AF:DP	0/1:811,939:0.54:1750
chr9	33797962	rs374178684	A	G	42329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;ClippingRankSum=0.000;DB;DP=1885;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-28.876;QD=22.54;ReadPosRankSum=4.486;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:828,1050:0.56:1878
chr9	33797962	.	ACTCTCCTCACCTGCCG	GCTCTCCACACCTGCCA,GCTCTCCTCACCTGCCG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=110;MMLQ=26;MQ=52.97;NF=169,367;NR=117,310;PP=2934,2962;QD=20;SC=TGCTGATCAAACTCTCCTCAC;SbPval=0.83;Source=Platypus;TC=1070;TCF=559;TCR=511;TR=286,677;WE=33798007;WS=33797941;set=Platypus	GT:AF:DP	0/1:0.27:1070
chr9	33797969	rs149664918	T	A	12905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.137;ClippingRankSum=0.000;DB;DP=1969;ExcessHet=3.0103;FS=4.089;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-17.039;QD=6.58;ReadPosRankSum=-0.925;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:1545,415:0.21:1960
chr9	33797978	rs145485932	G	A	14021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.271;ClippingRankSum=0.000;DB;DP=2007;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-15.746;QD=7.02;ReadPosRankSum=2.793;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:1552,446:0.22:1998
chr9	33797987	rs137945391	G	T	26096.77	.	AC=1;AF=0.500;AN=2;DB;DP=2002;set=Intersection	GT:AD:AF:DP	0/1:1279,714:0.36:1993
chr9	33797991	rs146966861	G	A	15186.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DB;DP=1975;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-14.853;QD=7.73;ReadPosRankSum=8.150;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:1496,469:0.24:1965
chr9	33797992	rs147593137	C	T	15216.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.989;ClippingRankSum=0.000;DB;DP=1974;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-14.777;QD=7.75;ReadPosRankSum=8.440;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:1493,471:0.24:1964
chr9	33797999	rs142141488	A	G	25109.77	.	AC=1;AF=0.500;AN=2;DB;DP=1896;set=Intersection	GT:AD:AF:DP	0/1:1218,668:0.35:1886
chr9	33798016	.	C	T	19565.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.603;ClippingRankSum=0.000;DP=1616;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-9.345;QD=12.16;ReadPosRankSum=-2.215;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:1091,518:0.32:1609
chr9	33798016	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=132;MMLQ=27;MQ=53.2;NF=126;NR=197;PP=2944;QD=20;SC=CTCTGCCCACCACCCCTCCAG;SbPval=0.68;Source=Platypus;TC=994;TCF=422;TCR=572;TR=323;WE=33798025;WS=33798004;set=Platypus	GT:AD:AF:DP	0/1:671,323:0.32:994
chr9	33798017	rs855581	A	G	33916.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.220;ClippingRankSum=0.000;DB;DP=1597;ExcessHet=3.0103;FS=4.428;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=13.465;QD=21.33;ReadPosRankSum=-6.939;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:502,1088:0.68:1590
chr9	33798037	.	T	C	12936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=1263;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-8.130;QD=10.30;ReadPosRankSum=-0.429;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:896,360:0.29:1256
chr9	33798042	rs141382822	G	C	11800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=1192;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-6.321;QD=9.96;ReadPosRankSum=0.637;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:859,326:0.28:1185
chr9	33798052	rs377380263	C	T	8007.77	.	AC=1;AF=0.500;AN=2;DB;DP=1040;set=Intersection	GT:AD:AF:DP	0/1:617,416:0.40:1033
chr9	33798073	.	C	T	19156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DP=685;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-9.606;QD=28.63;ReadPosRankSum=1.078;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:198,471:0.70:669
chr9	33798075	.	T	C	18597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.491;ClippingRankSum=0.000;DP=658;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-9.535;QD=28.92;ReadPosRankSum=1.371;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:192,451:0.70:643
chr9	33798079	rs144845866	T	C	5300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.348;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-11.417;QD=9.06;ReadPosRankSum=2.802;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:315,270:0.46:585
chr9	33798112	.	C	T	3825.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:46,121:0.72:167
chr9	33798574	rs201773718	G	A	2321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-17.301;QD=6.75;ReadPosRankSum=-4.310;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:271,73:0.21:344
chr9	33798596	rs377148991	T	C	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.372;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-17.238;QD=7.77;ReadPosRankSum=2.083;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:256,95:0.27:351
chr9	33798916	.	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-1.957;QD=8.95;ReadPosRankSum=0.036;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr9	33798960	rs72711744	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	33798998	rs373120184	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-6.129;QD=7.34;ReadPosRankSum=2.323;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr9	33799010	.	C	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-6.274;QD=5.80;ReadPosRankSum=3.012;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr9	33799026	rs148495550	C	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-7.001;QD=3.57;ReadPosRankSum=2.468;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr9	33799043	rs142813493	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-8.656;QD=1.82;ReadPosRankSum=0.572;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:124,15:0.11:139
chr9	33799055	.	CG	TA	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=2.413;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-9.751;QD=0.90;ReadPosRankSum=-0.990;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:146,14:0.09:160
chr9	33799163	rs376841271	C	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-16.314;QD=3.54;ReadPosRankSum=0.763;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:300,53:0.15:353
chr9	33799181	.	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-15.437;QD=3.65;ReadPosRankSum=1.240;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:309,54:0.15:363
chr9	33799186	.	G	A	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-15.380;QD=3.84;ReadPosRankSum=0.257;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:299,55:0.16:354
chr9	33799218	.	G	A	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-14.029;QD=4.11;ReadPosRankSum=-1.667;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:196,43:0.18:239
chr9	33799224	.	C	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-12.778;QD=4.01;ReadPosRankSum=0.610;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:178,32:0.15:210
chr9	33799230	.	C	CTG	728.73	.	AC=1;AF=0.500;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	0/1:159,29:0.15:188
chr9	33799245	.	G	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-10.111;QD=4.05;ReadPosRankSum=2.264;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:123,24:0.16:147
chr9	33799251	.	C	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-9.921;QD=4.42;ReadPosRankSum=2.257;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:116,24:0.17:140
chr9	33799263	.	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-8.829;QD=5.15;ReadPosRankSum=2.346;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:94,22:0.19:116
chr9	33799282	.	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-4.649;QD=0.50;ReadPosRankSum=0.463;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr9	33912159	rs60882935	G	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr9	33927899	rs307692	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	33932688	rs307648	G	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	33932702	rs307649	G	T	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr9	33932802	rs60061666	C	T	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	33935736	rs307652	A	G	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	33939062	rs2307692	TCC	T	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	33941759	rs307658	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	33948652	rs307654	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	33960778	.	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=0.29;ReadPosRankSum=1.820;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:122,31:0.20:153
chr9	33969352	rs307675	T	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	33973324	rs307682	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	34011835	rs7029122	C	T	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	34096597	rs7857551	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	34211842	rs73496356	C	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	34211942	rs1556439	T	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	34256465	rs73494718	C	A	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr9	34286486	rs6476442	G	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	34370701	rs58832809	TG	T	1277.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	34371788	rs7852399	A	T	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr9	34372783	rs4879781	G	C	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	34372873	rs4879782	C	G	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	34379268	rs113195593	C	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	34382726	rs3808876	A	G	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	34402173	rs10738926	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	34406801	rs72019483	C	CT	159.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.150;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr9	34407204	rs10119711	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	34407331	rs10972095	G	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	34407423	rs10116555	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	34407572	rs7847950	G	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	34485237	rs16931549	C	T	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	34487782	rs4878572	C	T	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	34500595	rs4878575	G	T	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	34500821	rs11793196	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	34556453	rs2070802	A	T	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	34569010	rs9695558	T	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	34614681	rs12352811	G	C	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr9	34614956	.	T	C	630.77	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	34621345	rs148006007	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	34622166	rs10972172	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	34622389	rs3808869	A	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	34622463	rs12337871	C	T	8910.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	34623338	rs10972173	A	G	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	34627799	rs148061924	C	T	9502.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr9	34635598	rs4879809	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	34650279	rs56121779	C	CA	535.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.060;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr9	34650593	rs73501024	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	34659727	rs199498838	G	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	34725069	rs114933270	T	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:216,72:0.25:288
chr9	34725368	rs151104708	A	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.05;QD=24.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	34725742	rs62547039	T	C	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:321,231:0.42:552
chr9	34832919	rs12377823	C	T	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	34833080	rs138460400	TC	T	2736.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	34833350	rs200803127	T	A	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.00;QD=30.81;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	34834258	rs201521761	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.74;QD=25.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	34835273	rs521552	A	C	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;QD=26.80;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	34835861	rs924566	C	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	34836905	rs3802426	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	34837263	rs10607312	GCA	G	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	35045878	rs16932164	G	A	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	35060746	rs562381	A	G	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	35060955	rs2258240	T	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	35062972	rs514492	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	35068213	rs78639645	C	T	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	35075969	rs4986939	G	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	35077441	rs554098	T	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	35089048	rs556766	A	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	35090782	rs505297	A	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	35092779	rs77344591	G	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr9	35093020	rs568300	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	35100002	rs664357	T	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	35100569	rs586017	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	35101870	rs693325	C	G	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	35107858	rs7039828	C	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr9	35259202	rs68023360	GCTGT	G	307.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	35381504	rs2281999	C	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	35398406	rs2274593	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	35546735	rs1535422	A	G	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:2,416:1.00:418
chr9	35562328	rs5897609	TACAA	T	5367.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	35606884	rs2275422	G	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	35607060	rs138350632	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	35610912	rs4879913	A	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	35612781	rs139510229	TTGA	T	5555.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	35612978	rs34791102	G	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	35615989	rs142573111	C	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	35617366	rs77356015	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	35618520	rs116571006	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	35650458	rs2297880	G	A	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	35660901	rs2275420	C	T	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr9	35660990	rs1339374	A	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	35661827	rs56077544	G	A	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	35665153	rs45567235	C	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	35674101	rs12553173	T	C	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	35677702	rs2857801	T	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	35679061	rs2857802	C	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	35682296	rs11998	T	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	35682764	rs138163723	A	AG	3032.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	35683240	rs149115565	T	TG,TGG	3793.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=0.454;SOR=0.951;set=HC	GT:AD:AF:DP	1/2:2,49,114:0.30,0.69:165
chr9	35684822	rs3215700	C	CG	3350.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:7,145:0.95:152
chr9	35704898	rs3215701	GA	G	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	35707054	rs741917	C	T	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	35711806	rs2249250	G	T	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	35712242	rs114636487	G	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	35712823	rs2249133	G	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	35739115	rs3833700	G	GC	5057.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	35739876	rs3750434	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	35741941	rs79750066	G	A	8030.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:3,325:0.99:328
chr9	35748669	rs34312177	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	35751221	rs1570248	C	T	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	35752252	rs1570249	G	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	35753657	rs75446899	G	A	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	35806118	rs371968545	C	T	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	35825413	rs4879930	C	T	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	35829390	rs2381409	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	35834942	rs2236291	T	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	35841783	rs2236293	G	A	6682.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	35845929	rs7848557	A	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	35906583	.	T	TCCACCACCACCA	11549.73	.	AC=2;AF=1.00;AN=2;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.70;QD=49.78;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	35957355	rs2233568	G	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	35957669	rs2233564	T	C	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	35958047	rs2233558	T	C	7130.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr9	36036973	rs147477093	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	36063743	rs942478	C	G	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	36107824	rs79244261	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	36109839	rs35304496	C	CA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=2.102;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr9	36117210	rs2274521	C	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	36135923	rs7041851	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	36136526	rs16932970	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	36136566	rs16932974	A	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	36136587	rs3739614	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	36150736	rs79178772	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	36151164	rs2277172	G	A	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	36169494	rs3739610	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	36169598	rs3739609	T	C	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	36191004	rs2274523	C	T	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	36191149	rs2274524	T	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	36216324	.	A	ATGTGTGTGTGTGTGTGTGTGTG	759.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;QD=39.99;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	36276857	rs7875447	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	36369646	rs34904529	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=2.753;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr9	36657222	rs115894778	G	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	36669228	rs3780133	C	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	36674842	rs2274473	C	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	36823513	rs73645884	A	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	36823543	rs73446996	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	36823744	rs73446997	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	36840727	rs12337859	C	G	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	36864066	rs4378045	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=23.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	36864119	rs4289895	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=24.64;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	36864379	rs72735606	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	36882264	rs10650417	T	TAC,TACAC	1009.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.86;MQRankSum=0.134;QD=32.57;ReadPosRankSum=0.809;SOR=1.675;set=HC	GT:AD:AF:DP	1/2:1,14,16:0.45,0.52:31
chr9	37020622	rs2297105	A	C	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	37033891	rs150432925	G	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	37304168	rs11422051	A	AT	2543.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:5,115:0.96:120
chr9	37305829	rs3837244	GATAT	G	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	37426524	rs2736664	C	T	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	37429661	rs309459	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	37429814	rs309458	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	37432264	rs309455	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	37436632	.	CCT	C	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.592;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:265,45:0.15:310
chr9	37441808	rs309450	A	G	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	37486603	rs1571234	A	G	15311.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=1.955;SOR=0.480;set=HC	GT:AD:AF:DP	1/1:1,588:1.00:589
chr9	37486916	rs913278	G	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	37489562	rs7860865	C	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	37497998	rs146328128	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	37503124	rs7047823	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	37522812	rs12343402	A	G	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	37529344	rs28401636	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	37536998	rs927930	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	37708307	rs2296555	A	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	37715574	rs1952126	G	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	37715724	rs1952125	T	G	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	37724195	rs10814609	A	G	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	37732142	rs7035345	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	37732159	.	T	C	216.78	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	37735736	rs111411060	C	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	37737283	rs2296552	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	37739932	rs10758456	G	A	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	37740637	rs2281872	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	37740784	rs35078007	C	G	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr9	37744911	rs73447213	C	T	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	37745186	rs140060150	G	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	37745304	rs35075933	G	A	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	37745413	rs3747541	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	37745437	rs62640013	C	T	6464.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	37745440	rs62640009	G	A	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	37745539	rs61170721	C	T	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	37745678	rs57942614	G	A	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	37745689	rs59640173	C	T	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	37745741	rs62640014	G	T	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	37762533	rs55999967	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	37769857	rs77963004	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	37770737	rs150866114	G	GTA	1932.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.47;ReadPosRankSum=-0.724;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr9	37776492	rs10608450	CTG	C	1579.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	37782111	rs7158	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	37784223	rs73649214	A	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	37800406	rs34106593	GA	G	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.556;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chr9	37800550	rs73447281	C	T	13642.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:2,522:1.00:524
chr9	37800670	rs201866901	TC	T	10243.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	37800692	rs10814624	A	G	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	37801485	rs75986742	G	C	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	37819175	rs11330143	CA	C	118.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	37855003	rs7040503	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	37855038	rs2296209	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	37860258	rs16934511	G	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	37861092	.	A	G	132.90	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	37886511	rs10973596	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	37948724	rs3827519	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr9	37974743	rs1138374	T	C	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	38015646	rs7047952	C	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	38068370	rs78046731	G	A	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	38068532	rs3750444	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	38395940	rs2228094	T	C	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr9	38396065	rs2073478	G	T	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	38396502	rs4878199	G	A	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	38397355	rs3043	G	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	38414030	.	TCACACACA	T,TCA	6623.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=195;set=Intersection	GT:AF:DP	1/2:0.18,0.81:172
chr9	38571163	rs2015076	G	A	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:3,143:0.98:146
chr9	38571214	rs3045002	T	TACA	3516.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	38571976	rs140529454	T	TTAAA	1941.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	38573141	rs1974262	T	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	38573270	rs114723560	C	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	38586130	rs1415581	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	38588602	rs2799163	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	38595886	rs2996347	T	C	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	38603131	rs3005823	G	A	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	38603140	rs11377377	A	AT	3917.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	38615779	rs1765381	T	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	39133168	rs6476772	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.22;QD=24.96;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	40503085	rs139489532	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.35;QD=26.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	40503105	rs201003096	G	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.77;QD=27.27;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	43816630	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=40.53;MQRankSum=-3.925;QD=2.04;ReadPosRankSum=-2.144;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr9	43816656	rs199925161	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.00;QD=30.75;SOR=3.393;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	43860883	.	G	T	161.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr9	43860959	rs145957320	G	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr9	65602674	rs2954515	T	C	119.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.74;MQRankSum=-1.534;QD=14.99;ReadPosRankSum=0.319;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr9	66457003	.	C	T	692.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr9	66457014	.	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-6.247;QD=9.55;ReadPosRankSum=0.754;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr9	66457016	rs10436128	C	T	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=2.848;QD=14.18;ReadPosRankSum=0.906;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr9	66457019	rs7040398	G	A	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-4.339;QD=27.71;ReadPosRankSum=1.092;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:27,52:0.66:79
chr9	66457027	rs76122331	T	A	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-4.679;QD=29.22;ReadPosRankSum=1.551;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:30,56:0.65:86
chr9	66457040	rs12554358	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-8.994;QD=6.47;ReadPosRankSum=1.329;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:86,24:0.22:110
chr9	66457051	rs79307166	G	C	3295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-5.723;QD=24.78;ReadPosRankSum=1.604;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:51,82:0.62:133
chr9	66457051	.	GGATGCTCCCAG	CAATGCTCCTAC,CGATGCTCCCAG	2185	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=116;MMLQ=27;MQ=47.68;NF=17,77;NR=10,47;PP=2117,2185;QD=81.1284398097;SC=GTGAGTCTGCGGATGCTCCCA;SbPval=0.6;Source=Platypus;TC=158;TCF=98;TCR=60;TR=27,124;WE=66457085;WS=66457041;set=Platypus	GT:AF:DP	0/1:0.17:158
chr9	66457052	.	G	A	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-5.782;QD=21.76;ReadPosRankSum=1.754;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:62,78:0.56:140
chr9	66457060	.	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-8.901;QD=2.82;ReadPosRankSum=3.368;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:147,23:0.14:170
chr9	66457062	.	G	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-8.968;QD=2.59;ReadPosRankSum=3.437;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:152,23:0.13:175
chr9	66457076	rs76994164	T	C	2648.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:135,86:0.39:221
chr9	66457077	.	T	C	230.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-9.038;QD=0.96;ReadPosRankSum=4.841;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:218,22:0.09:240
chr9	66457096	.	CTGA	C	2954	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=153;MMLQ=24;MQ=45.86;NF=55;NR=56;PP=2954;QD=20;SC=AACTCGGTGTCTGAGGGGTTC;SbPval=0.34;Source=Platypus;TC=172;TCF=78;TCR=94;TR=111;WE=66457123;WS=66457082;set=Platypus	GT:AD:AF:DP	1/0:61,111:0.65:172
chr9	66457099	.	AG	A	2963	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=5;HapScore=1;MGOF=153;MMLQ=27;MQ=45.98;NF=59;NR=61;PP=2963;QD=20;SC=TCGGTGTCTGAGGGGTTCTGT;SbPval=0.35;Source=Platypus;TC=180;TCF=81;TCR=99;TR=120;WE=66457123;WS=66457082;set=Platypus	GT:AD:AF:DP	1/0:60,120:0.67:180
chr9	66457106	.	C	T	966	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=1;MGOF=153;MMLQ=27;MQ=46.63;NF=65;NR=34;PP=966;QD=10.1088001267;SC=CTGAGGGGTTCTGTCTGCAGC;SbPval=0.79;Source=Platypus;TC=252;TCF=151;TCR=101;TR=99;WE=66457123;WS=66457082;set=Platypus	GT:AD:AF:DP	1/0:153,99:0.39:252
chr9	66457112	rs113087405	G	A	3595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-2.129;QD=10.24;ReadPosRankSum=2.699;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:247,104:0.30:351
chr9	66457126	.	TGC	T	3399.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=0.418;QD=8.39;ReadPosRankSum=1.903;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:301,104:0.26:405
chr9	66457127	rs73447819	G	A	2092.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-9.398;QD=5.23;ReadPosRankSum=-2.413;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:320,80:0.20:400
chr9	66457127	.	GCA	ACA,ATG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=182;MMLQ=26;MQ=46.33;NF=121,30;NR=98,28;PP=2962,1516;QD=20;SC=TCCTCCTGCTGCAGAAGGAGA;SbPval=0.54;Source=Platypus;TC=289;TCF=160;TCR=129;TR=219,58;WE=66457137;WS=66457117;set=Platypus	GT:AF:DP	0/1:0.76:289
chr9	66457129	.	A	ATG	3396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=0.363;QD=8.28;ReadPosRankSum=2.192;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:306,104:0.25:410
chr9	66457151	rs78939328	G	C	6977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-6.210;QD=16.65;ReadPosRankSum=-8.432;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:232,187:0.45:419
chr9	66457169	rs138400587	AGAG	A	4511.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=5.012;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-2.924;QD=13.15;ReadPosRankSum=-2.480;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:218,125:0.36:343
chr9	66457173	.	GGA	G	2408.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-9.981;QD=7.26;ReadPosRankSum=5.890;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:255,77:0.23:332
chr9	66457178	.	G	C	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-10.058;QD=7.40;ReadPosRankSum=5.548;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:250,77:0.24:327
chr9	66457184	.	G	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-0.243;QD=3.74;ReadPosRankSum=-3.538;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:257,50:0.16:307
chr9	66457189	rs2874584	C	T	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-1.128;QD=6.78;ReadPosRankSum=-1.874;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:228,63:0.22:291
chr9	66457192	rs148663514	TAGAGAGAG	TAGAGAG,T	827.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=289;set=Intersection	GT:AF:DP	0/1:0.19:257
chr9	66457193	.	A	T	1021.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=7.250;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=0.406;QD=3.72;ReadPosRankSum=-1.557;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:243,32:0.12:275
chr9	66457196	.	G	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=6.519;MLEAC=1;MLEAF=0.500;MQ=54.19;MQRankSum=0.450;QD=2.20;ReadPosRankSum=-1.002;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:232,27:0.10:259
chr9	66457200	.	G	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=8.055;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=0.932;QD=1.63;ReadPosRankSum=-1.815;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:222,27:0.11:249
chr9	66457204	.	G	C	2614.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=2.311;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-9.141;QD=10.94;ReadPosRankSum=2.466;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:157,82:0.34:239
chr9	66457205	.	A	AAGGGGGGAG	401.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=5.273;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=0.869;QD=1.69;ReadPosRankSum=-2.288;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:213,25:0.11:238
chr9	66457206	.	G	C	1338.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-0.812;QD=5.87;ReadPosRankSum=-0.790;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:182,46:0.20:228
chr9	66457209	.	AG	A	2645.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=10.920;MLEAC=1;MLEAF=0.500;MQ=53.05;MQRankSum=-8.541;QD=11.07;ReadPosRankSum=4.994;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:157,82:0.34:239
chr9	66457211	.	ACAGAAAAG	A	2370.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.708;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=11.814;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=-8.717;QD=12.81;ReadPosRankSum=5.001;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:118,67:0.36:185
chr9	66457216	rs150998016	A	G	188.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=53.24;MQRankSum=1.034;QD=0.99;ReadPosRankSum=-3.516;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:176,14:0.07:190
chr9	66457228	.	A	C	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=5.683;MLEAC=1;MLEAF=0.500;MQ=52.18;MQRankSum=-7.407;QD=13.14;ReadPosRankSum=3.715;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:112,63:0.36:175
chr9	66457231	rs140644333	G	GAC	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=51.93;MQRankSum=1.014;QD=0.58;ReadPosRankSum=-4.231;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:161,14:0.08:175
chr9	66457233	.	G	C	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=6.843;MLEAC=1;MLEAF=0.500;MQ=51.69;MQRankSum=-6.936;QD=13.85;ReadPosRankSum=2.701;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:107,63:0.37:170
chr9	66457237	.	G	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=9.584;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-4.358;QD=3.75;ReadPosRankSum=0.468;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:130,42:0.24:172
chr9	66457253	rs73447820	A	G,C	2223.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=171;set=Intersection	GT:AF:DP	1/2:0.38,0.31:168
chr9	66457265	.	C	A	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=4.910;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-3.893;QD=9.73;ReadPosRankSum=0.671;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:123,51:0.29:174
chr9	66457270	.	G	A	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=49.47;MQRankSum=-3.260;QD=10.06;ReadPosRankSum=-0.642;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:118,49:0.29:167
chr9	66457278	.	G	A	1632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.149;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=8.292;MLEAC=1;MLEAF=0.500;MQ=49.27;MQRankSum=-2.063;QD=10.89;ReadPosRankSum=-2.573;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:107,43:0.29:150
chr9	66457310	rs75999199	T	G	2442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=47.06;MQRankSum=-4.512;QD=14.29;ReadPosRankSum=1.046;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:105,66:0.39:171
chr9	66457313	rs79959518	G	A	3586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=7.586;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-5.874;QD=20.50;ReadPosRankSum=-1.506;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:77,98:0.56:175
chr9	66457317	rs77524857	C	T	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.470;MLEAC=1;MLEAF=0.500;MQ=47.01;MQRankSum=-5.049;QD=15.02;ReadPosRankSum=0.380;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:108,72:0.40:180
chr9	66457324	rs80001863	G	A	2744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-5.249;QD=14.22;ReadPosRankSum=-0.004;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:114,79:0.41:193
chr9	66457374	rs199952614	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=48.75;MQRankSum=-4.597;QD=2.09;ReadPosRankSum=-0.380;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:169,28:0.14:197
chr9	66457388	rs1809739	T	G	5704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-7.925;QD=25.58;ReadPosRankSum=2.449;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:35,188:0.84:223
chr9	66457392	.	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=49.66;MQRankSum=-3.665;QD=0.76;ReadPosRankSum=1.027;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:206,20:0.09:226
chr9	66457399	rs78461570	T	G	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr9	66457400	.	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=-3.745;QD=1.11;ReadPosRankSum=-0.853;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:222,26:0.10:248
chr9	66457440	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=2;MMLQ=24;MQ=46.75;NF=54;NR=57;PP=2962;QD=20;SC=CCCCCCACCCAGGAAAACCAA;SbPval=0.41;Source=Platypus;TCF=124;TR=111;WE=66457488;set=Platypus	GT:AD:AF:DP	0/1:130,111:0.46:241
chr9	66457451	rs79122745	T	C	2538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-8.437;QD=9.37;ReadPosRankSum=1.843;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:193,78:0.29:271
chr9	66457465	rs11262297	T	G	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-9.638;QD=8.36;ReadPosRankSum=4.373;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:202,65:0.24:267
chr9	66457467	.	G	GTGTGT	1616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-7.953;QD=6.06;ReadPosRankSum=4.728;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:213,54:0.20:267
chr9	66457471	.	T	TA	2975	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=6;HapScore=2;MGOF=89;MMLQ=27;MQ=49.6;NF=46;NR=53;PP=2975;QD=20;SC=AGACTTGTTTTTTTCCTTGGA;SbPval=0.34;Source=Platypus;TC=182;TCF=76;TCR=106;TR=99;WE=66457488;WS=66457433;set=Platypus	GT:AD:AF:DP	0/1:83,99:0.54:182
chr9	66457475	rs55747937	C	T	6062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-3.439;QD=21.58;ReadPosRankSum=0.917;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:69,212:0.75:281
chr9	66457480	rs77629849	G	A	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-9.025;QD=6.36;ReadPosRankSum=5.135;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:235,62:0.21:297
chr9	66457535	rs74360065	T	C	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=10.266;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-3.146;QD=4.79;ReadPosRankSum=1.936;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:343,75:0.18:418
chr9	66457549	rs77706622	A	G	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:338,86:0.20:424
chr9	66457562	rs79475537	C	T	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=8.923;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=1.899;QD=4.45;ReadPosRankSum=2.371;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:351,71:0.17:422
chr9	66457565	.	G	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=8.832;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=2.317;QD=4.58;ReadPosRankSum=2.172;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:340,70:0.17:410
chr9	66457585	rs78196222	G	T	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=7.947;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=0.767;QD=6.21;ReadPosRankSum=1.495;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:320,82:0.20:402
chr9	66457594	rs1809740	A	G	6533.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:129,250:0.66:379
chr9	66457601	rs79204868	G	T	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.693;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=8.638;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=3.627;QD=5.04;ReadPosRankSum=-1.885;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:306,67:0.18:373
chr9	66457612	.	C	A	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.945;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=4.952;QD=4.68;ReadPosRankSum=-2.464;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:291,60:0.17:351
chr9	66457613	rs144074368	C	G	2472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.296;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=10.573;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=1.842;QD=7.23;ReadPosRankSum=-1.679;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:266,76:0.22:342
chr9	66457620	rs74362572	C	T	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.468;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=8.253;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=3.433;QD=5.14;ReadPosRankSum=-2.553;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:273,59:0.18:332
chr9	66457633	.	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.136;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=4.152;QD=1.24;ReadPosRankSum=0.345;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:256,31:0.11:287
chr9	66457652	rs1809741	C	A	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=12.243;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=0.452;QD=6.41;ReadPosRankSum=1.748;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:174,46:0.21:220
chr9	66457664	rs78392104	T	C	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:145,40:0.22:185
chr9	66457675	rs75677823	G	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.84;MQRankSum=4.051;QD=1.03;ReadPosRankSum=-0.126;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:122,14:0.10:136
chr9	66457686	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=50.13;MQRankSum=-1.520;QD=0.44;ReadPosRankSum=1.429;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:100,9:0.08:109
chr9	66457690	.	C	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=3.553;QD=1.49;ReadPosRankSum=-0.307;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:90,11:0.11:101
chr9	66457691	rs111684071	A	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:76,21:0.22:97
chr9	66457730	.	A	C	590	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=4;MGOF=107;MMLQ=27;MQ=41.21;NF=0;NR=14;PP=590;QD=44.6265151819;SC=CTGGCGAAGAAAATGTCCTTC;SbPval=1.0;Source=Platypus;TC=36;TCF=2;TCR=34;TR=14;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:22,14:0.39:36
chr9	66457742	.	T	C	590	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=4;MGOF=107;MMLQ=28;MQ=41.03;NF=0;NR=12;PP=590;QD=52.0642677123;SC=ATGTCCTTCCTCTGGGGAAAG;SbPval=1.0;Source=Platypus;TC=28;TCF=2;TCR=26;TR=12;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:16,12:0.43:28
chr9	66499292	rs77998783	T	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=51.53;MQRankSum=-4.628;QD=4.87;ReadPosRankSum=2.535;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:65,32:0.33:97
chr9	66499334	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.68;MQRankSum=-2.692;QD=0.77;ReadPosRankSum=1.454;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:56,11:0.16:67
chr9	66499336	rs185058144	A	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=48.69;MQRankSum=-2.325;QD=11.25;ReadPosRankSum=-0.687;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr9	66499356	rs201959709	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.600;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-1.410;QD=6.69;ReadPosRankSum=-1.673;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr9	66517198	rs10796698	C	A	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	68372217	rs190581388	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.27;MQRankSum=-0.842;QD=12.15;ReadPosRankSum=0.674;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr9	68372238	rs374781801	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.29;MQRankSum=0.637;QD=9.08;ReadPosRankSum=-2.017;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	68372264	rs140520174	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=46.16;MQRankSum=-3.066;QD=3.42;ReadPosRankSum=0.666;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr9	68372282	rs147422696	G	T	584.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=49.40;MQRankSum=0.576;QD=10.44;ReadPosRankSum=1.392;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr9	68372283	rs150871961	C	T	584.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=49.67;MQRankSum=0.227;QD=9.00;ReadPosRankSum=1.453;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr9	68372284	rs140186551	T	G	328.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=10.586;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-2.929;QD=4.83;ReadPosRankSum=-1.153;SOR=2.153;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr9	68372296	.	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-4.022;QD=2.31;ReadPosRankSum=-0.154;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:90,13:0.13:103
chr9	68372298	.	CC	TG	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.652;JOINED;MLEAC=1;MLEAF=0.500;MQ=51.41;MQRankSum=-4.094;QD=2.10;ReadPosRankSum=0.039;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:93,13:0.12:106
chr9	68372328	rs79919811	A	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=-1.200;QD=1.84;ReadPosRankSum=-2.022;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:142,35:0.20:177
chr9	68372337	rs140269697	C	T	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=1.207;QD=5.54;ReadPosRankSum=0.932;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:152,57:0.27:209
chr9	68372352	rs78404990	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-4.192;QD=0.31;ReadPosRankSum=0.793;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:204,32:0.14:236
chr9	68372354	rs80225136	A	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=0.593;QD=7.04;ReadPosRankSum=-0.401;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:180,60:0.25:240
chr9	68372357	rs77799799	T	C	3470.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:106,142:0.57:248
chr9	68372367	rs79888407	C	A	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=0.717;QD=7.74;ReadPosRankSum=-2.050;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:190,61:0.24:251
chr9	68372401	rs75707116	C	T	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=3.174;QD=5.06;ReadPosRankSum=0.562;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:194,46:0.19:240
chr9	68372402	rs78803668	G	A	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=-3.644;QD=9.64;ReadPosRankSum=0.526;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:116,123:0.51:239
chr9	68372407	rs74366995	T	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=2.720;QD=5.09;ReadPosRankSum=1.320;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:191,41:0.18:232
chr9	68372409	.	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=2.632;QD=4.86;ReadPosRankSum=1.412;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:190,40:0.17:230
chr9	68372413	rs77458778	G	A	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=2.758;QD=4.74;ReadPosRankSum=1.106;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:188,40:0.18:228
chr9	68372420	rs77874833	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-3.279;QD=1.61;ReadPosRankSum=0.093;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:188,26:0.12:214
chr9	68372430	rs376337921	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-1.978;QD=1.99;ReadPosRankSum=0.779;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:151,19:0.11:170
chr9	68372434	rs368849262	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=-2.273;QD=2.11;ReadPosRankSum=0.230;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:137,19:0.12:156
chr9	68372441	rs371275705	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-2.204;QD=2.74;ReadPosRankSum=-0.600;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:107,17:0.14:124
chr9	68372465	.	CA	TG	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.465;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=-0.269;QD=2.72;ReadPosRankSum=-1.107;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr9	68372470	rs141135096	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=52.34;MQRankSum=-0.168;QD=2.52;ReadPosRankSum=-1.272;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:58,9:0.13:67
chr9	68372476	rs140148795	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.68;MQRankSum=-0.123;QD=1.92;ReadPosRankSum=-0.508;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:49,6:0.11:55
chr9	68409477	.	A	T	84	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=2;MGOF=49;MMLQ=24;MQ=45.84;NF=5;NR=2;PP=84;QD=16.9673160782;SC=CACGAGGAAAACCGTCCCTGT;SbPval=0.2;Source=Platypus;TC=17;TCF=15;TCR=2;TR=7;WE=68409485;WS=68409467;set=Platypus	GT:AD:AF:DP	0/1:10,7:0.41:17
chr9	68409623	rs376674886	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-7.529;QD=5.42;ReadPosRankSum=-1.205;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr9	68409631	rs78137483	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-8.005;QD=6.97;ReadPosRankSum=-1.453;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr9	68409659	rs34008877	C	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-6.500;QD=6.50;ReadPosRankSum=0.747;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr9	68409677	rs113826078	A	G	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-6.540;QD=8.89;ReadPosRankSum=1.793;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr9	68409702	rs79189381	C	G	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-2.747;QD=8.64;ReadPosRankSum=3.560;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:52,27:0.34:79
chr9	68409713	.	A	AACAC	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-4.920;QD=2.27;ReadPosRankSum=-0.587;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:69,11:0.14:80
chr9	68409745	rs73649016	C	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-6.990;QD=7.43;ReadPosRankSum=1.497;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr9	68409789	rs79786341	G	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-4.544;QD=4.10;ReadPosRankSum=0.202;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr9	68415189	.	AT	A	88.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=0.882;QD=0.75;ReadPosRankSum=0.669;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:107,11:0.09:118
chr9	68415191	.	AAT	A	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=0.869;QD=0.71;ReadPosRankSum=0.620;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:110,11:0.09:121
chr9	68415193	rs80256038	T	A	1901.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr9	68415196	rs4454394	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-0.891;QD=1.39;ReadPosRankSum=0.656;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:117,24:0.17:141
chr9	68415216	rs71234092	G	A	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-0.361;QD=7.78;ReadPosRankSum=-0.033;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:166,92:0.36:258
chr9	68415386	rs1844035	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=1.587;QD=0.65;ReadPosRankSum=0.907;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr9	68415388	rs4928837	A	T	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-1.917;QD=25.97;ReadPosRankSum=-2.051;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:18,84:0.82:102
chr9	68427786	rs4300101	C	T	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:24,118:0.83:142
chr9	68427818	rs111699417	G	GA	718.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:122,44:0.27:166
chr9	68427877	rs4568707	G	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:35,110:0.76:145
chr9	68427938	rs113084687	CAT	C	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr9	68427956	rs4316243	T	C	948.80	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr9	68427957	.	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-0.727;QD=2.64;ReadPosRankSum=-0.591;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr9	68428005	rs77542827	G	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-3.087;QD=2.90;ReadPosRankSum=-0.498;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	68433462	rs111392331	T	C	6838.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:299,348:0.54:647
chr9	68433464	rs79004307	C	T	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-0.461;QD=4.85;ReadPosRankSum=3.331;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:522,121:0.19:643
chr9	68433468	rs75281072	G	C	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-0.547;QD=4.89;ReadPosRankSum=2.302;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:522,121:0.19:643
chr9	68433511	rs202018667	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=52.17;MQRankSum=-3.113;QD=0.66;ReadPosRankSum=-3.026;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:487,41:0.08:528
chr9	68433520	.	T	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=50.65;MQRankSum=-2.293;QD=1.32;ReadPosRankSum=-2.648;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:423,48:0.10:471
chr9	68433522	rs75582795	G	A	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=13.892;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-8.219;QD=4.83;ReadPosRankSum=3.003;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:330,136:0.29:466
chr9	68433522	.	GT	AC	1197	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=1;MGOF=39;MMLQ=27;MQ=42.41;NF=45;NR=67;PP=1197;QD=11.1648917398;SC=CTGCTTCATTGTATCTAATAA;SbPval=0.87;Source=Platypus;TC=363;TCF=180;TCR=183;TR=112;WE=68433545;WS=68433500;set=Platypus	GT:AD:AF:DP	1/0:251,112:0.31:363
chr9	68433523	rs62543350	T	C	15045.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:48,422:0.90:470
chr9	68433537	rs74819687	T	G	10939.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:171,284:0.62:455
chr9	68433548	.	C	T	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.864;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-3.358;QD=1.56;ReadPosRankSum=4.626;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:485,55:0.10:540
chr9	68433550	rs144797473	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.301;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=-3.660;QD=1.49;ReadPosRankSum=4.521;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:487,58:0.11:545
chr9	68433556	rs76632075	G	T	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=6.173;MLEAC=1;MLEAF=0.500;MQ=51.16;MQRankSum=4.557;QD=3.19;ReadPosRankSum=-0.501;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:432,136:0.24:568
chr9	68433567	.	C	T	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.373;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=13.640;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-12.518;QD=1.22;ReadPosRankSum=-5.642;SOR=1.869;set=HC	GT:AD:AF:DP	0/1:486,84:0.15:570
chr9	68433612	rs76007226	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-10.397;QD=0.58;ReadPosRankSum=1.249;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:443,40:0.08:483
chr9	68433620	rs62543351	C	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:296,161:0.35:457
chr9	68433641	rs78330154	G	T	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:234,134:0.36:368
chr9	68433701	rs62543352	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr9	69002193	rs75969422	T	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr9	69002200	rs10908046	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr9	69002294	rs79965448	C	T	4160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.418;QD=19.91;ReadPosRankSum=-2.344;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:105,104:0.50:209
chr9	69002304	rs78546776	C	G	5027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.508;QD=20.78;ReadPosRankSum=-2.951;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:114,128:0.53:242
chr9	69002317	rs76266132	T	C	5307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.501;QD=19.30;ReadPosRankSum=-0.381;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:130,145:0.53:275
chr9	69002413	rs62555122	T	C	3675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.28;ReadPosRankSum=1.510;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:62,103:0.62:165
chr9	69002423	rs62555123	G	A	3435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=1.987;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:49,84:0.63:133
chr9	71002554	rs2480145	G	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	71114312	rs12685375	C	T	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	71478595	rs72720038	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	71555492	rs10746973	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	71555522	rs10746974	C	T	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	71629038	.	C	CGCGGCG,CGCG	1219.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=98;set=Intersection	GT:AF:DP	0/1:0.84:58
chr9	71650752	rs2481598	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	71668335	rs35230326	C	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	71686181	rs9314854	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	71820008	rs2498440	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	71831398	rs2498417	T	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	71833287	rs7027812	G	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	71836572	rs139832825	T	C	222.89	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr9	71842927	rs17062723	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	71843023	rs2309428	C	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	71849286	.	TTTTC	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.14;ReadPosRankSum=-0.914;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr9	71852004	rs35797487	T	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	71854737	rs72187140	TAAAC	T	882.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	71854769	rs2993823	C	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	71865932	rs2282335	G	A	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	71986315	rs1034239	TG	CA	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	71986588	rs12001021	C	T	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	72002959	rs73459125	A	C	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	72003036	rs867366	T	C	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	72006393	rs139462503	C	CT	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr9	72046057	.	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.356;QD=1.12;ReadPosRankSum=0.447;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr9	72055828	rs75438348	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	72064749	rs2781532	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	72091104	rs2777862	G	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	72132199	rs11139063	G	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	72373624	rs10735564	A	G	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	72459567	rs10780678	G	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	72459640	rs11140621	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	72472746	rs35585376	TA	T	1574.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	72473053	rs1133275	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	72501698	rs4407955	G	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	72501962	rs4548246	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	72723209	rs2975886	A	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	72723224	rs2975887	T	C	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	72724537	rs3015215	T	C	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	72879304	rs12005618	G	A	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr9	72879475	rs1180101	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	72897434	rs1180116	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	72897440	rs1180117	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	72901096	rs1180123	T	C	5751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.97;ReadPosRankSum=1.690;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,239:1.00:240
chr9	72929769	rs11142363	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	72933774	rs11142365	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	72933958	rs7025228	G	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	72965438	rs1536957	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	73150984	rs6560142	C	T	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	73151715	rs7033976	C	T	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	73151970	rs3739776	C	T	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	73164611	rs1889914	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=31.47;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	73164712	rs1889915	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	73213386	rs34994337	G	A	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	73225401	rs7864641	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	73234066	rs7849400	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	73240312	rs7035025	C	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	73250378	.	ATTTTTT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.12;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr9	73255432	rs1538669	G	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	73391409	rs34030044	C	CA	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	73408518	rs10868890	T	G	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	73426077	rs116158640	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	73442724	rs1034538	C	T	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	73736320	rs12551555	G	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	74300311	rs36080695	T	TA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=11.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.807;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr9	74300640	rs2310021	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	74305098	rs2297089	C	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	74314210	rs4263836	A	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	74314368	rs5898223	T	TA	360.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.615;QD=13.36;ReadPosRankSum=-0.135;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chr9	74345484	.	G	A	579.77	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	74350002	rs2274698	A	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	74355185	rs3753006	T	G	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	74360096	rs25689	C	T	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	74360209	rs3739783	G	C	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr9	74477617	rs10573097	TAAGA	T	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	74526540	rs4744647	T	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	74526978	rs10580392	GCA	G	40.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	74561883	rs10120169	G	A	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	74671719	rs13295099	T	C	1748.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;MQRankSum=-0.298;QD=23.63;ReadPosRankSum=2.854;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr9	74671828	rs36059196	C	CT	245.80	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr9	74764627	rs3802506	C	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	74825707	rs11143170	T	C	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	74828718	rs200145454	CAAAAAAA	C	1240.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	74834384	rs10869148	C	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	74845989	rs10869150	C	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	74846104	rs17057536	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr9	74846187	rs34627726	TA	T	400.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.560;QD=11.45;ReadPosRankSum=0.513;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr9	74863449	rs3830994	AG	A	138.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	74975136	rs2809270	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	74975282	.	C	CA	194.74	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	74975711	rs1853276	T	C	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	74979593	rs2224603	G	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	75242807	rs7047173	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	75263674	rs1444842	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	75303653	rs2589615	C	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	75357515	rs12345051	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	75420448	rs71359524	C	CT	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.574;QD=10.53;ReadPosRankSum=0.177;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,51:0.75:68
chr9	75445494	rs13286809	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	75445654	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.67;ReadPosRankSum=-0.855;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr9	75521060	rs348472	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	75524691	rs8187978	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	75538839	rs8187935	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	75543974	rs8187922	T	TAA	2021.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	75554895	rs33988381	A	AT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.270;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr9	75774238	rs10114350	T	C	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr9	75782510	rs1342017	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	75783937	rs3739959	A	G	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	77245162	rs2146777	A	T	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	77275429	rs12343179	C	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	77415284	rs7859201	A	C	8051.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	77416972	rs11144089	C	T	8766.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	77436641	rs7018994	G	A	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	77442616	rs7045949	C	T	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	77454821	.	G	GGAGGGAGGGAGGGAGGGAGA	681.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.12;QD=68.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	77457028	.	GAA	G	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.997;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr9	77478816	rs60062173	A	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	77502160	rs1333342	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	77563087	rs2769058	C	T	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	77681579	rs114529001	C	T	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	77684690	rs3752955	A	C	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	77692555	rs60305501	CT	C	353.92	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr9	77745406	rs41287441	C	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	77745424	rs2295861	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	77746539	rs138502620	G	GT	994.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	77752675	rs2025159	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	78506145	rs7020560	G	A	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	78506187	rs7040769	T	C	13326.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr9	78601268	rs1538843	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	78711053	rs1416547	T	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	78711094	.	C	CAT	74	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=4;HapScore=2;MGOF=33;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=74;QD=43.5;SC=GAACCATAAACATATATATAT;SbPval=0.23;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=78711102;WS=78711084;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr9	78722418	rs12001112	A	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	78748980	.	C	CT	1235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.21;ReadPosRankSum=2.269;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:36,85:0.70:121
chr9	78773953	rs2297342	G	A	15845.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr9	78790143	.	GAATGGAATGA	G	1341.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.351;MLEAC=2;MLEAF=1.000;MQ=64.10;MQRankSum=2.776;QD=35.31;ReadPosRankSum=2.388;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr9	78790182	rs62556619	G	C	1337.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.224;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=3.710;QD=33.44;ReadPosRankSum=2.424;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:4,36:0.90:40
chr9	78790187	.	G	T	1519.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.500;MQ=63.38;MQRankSum=2.776;QD=33.76;ReadPosRankSum=0.831;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:4,41:0.91:45
chr9	78799566	rs1537183	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	78803466	rs7046850	T	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	78803931	rs2270571	A	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	78808171	.	C	T	3468.77	.	AC=2;AF=1.00;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	78808329	.	G	GAAAA	356	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=11;HapScore=2;MGOF=30;MMLQ=18;MQ=59.1;NF=0;NR=8;PP=356;QD=47.75;SC=TTATTAAAAAGAAAAAAGCCA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=8;WE=78808337;WS=78808319;set=Platypus	GT:AD:AF:DP	1/1:3,8:0.73:11
chr9	78819998	rs10869732	T	C	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr9	78820011	rs7851394	G	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	78820154	rs140303801	C	T	8352.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr9	78820265	rs10869733	G	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	78820270	rs10781345	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.84;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	78848542	rs903545	C	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	78848554	rs7854396	G	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	78917015	rs11451259	T	TA	335.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	78917032	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.655;QD=2.32;ReadPosRankSum=0.212;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr9	78925814	rs2257775	C	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	78965993	rs2257220	G	A	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	78969059	rs7036921	C	A	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	78973285	rs148609896	CAG	C	536.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	79003324	rs2501926	G	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	79003440	rs2501924	G	A	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	79009106	rs2490582	A	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	79009139	rs3739729	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	79117751	rs2282683	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	79118329	rs1057406	G	A	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr9	79118631	rs111772588	AC	A	1763.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	79118661	rs1057419	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	79229572	rs58601122	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	79243767	rs10632629	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.29;ReadPosRankSum=0.484;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr9	79251600	rs582011	T	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	79259592	rs511040	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	79259850	rs512951	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	79306919	rs498266	G	A	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	79307176	rs500952	G	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	79318375	rs11267615	GGTGACAGCCTGCAAC	G	7666.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:4,176:0.98:180
chr9	79318471	rs560094	C	T	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	79318677	rs561970	T	C	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	79318921	rs620985	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	79318998	rs620552	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	79319050	rs620476	A	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	79319130	rs59728338	AT	A	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79320640	rs512110	C	T	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	79321276	rs517634	T	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	79321871	rs577993	C	T	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.47;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	79322068	rs683866	G	T	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr9	79322674	rs680775	A	G	2857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.346;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.559;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,112:0.99:113
chr9	79322720	rs680729	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	79324135	rs11267622	A	ATGACTGTTGCAG	3924.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:3,137:0.98:140
chr9	79324179	rs530978	G	A	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr9	79324741	rs557352	T	C	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr9	79325558	rs600859	G	C	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	79325615	rs611461	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	79465637	rs112139540	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	79634508	rs72209201	ACGGAGTG	A	2527.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	79636003	rs73468342	A	G	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	79814799	rs12552898	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	79820141	.	C	CT	492.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	79865187	rs2021998	G	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	79865213	rs116148204	T	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	79891237	rs7030802	T	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79896655	rs140324455	GTA	G	451	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr9	79897218	.	CTTT	C	54.37	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79910414	rs1317304	G	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	79917816	rs145835861	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	79922839	rs2275549	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	79922845	rs3216012	C	CT	694.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	79931437	rs146714554	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	79933569	rs138693074	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	79936457	rs146280301	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	79952468	rs12348097	A	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	79954404	rs373255264	TG	T	1111.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=41.18;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	79954406	.	TTTTG	T	424.37	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=12.270;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.504;QD=17.68;ReadPosRankSum=1.747;SOR=1.275;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr9	79955305	rs140476942	A	AT	702.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	79959095	rs139753431	T	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	79960141	rs7035855	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	79968293	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.356;QD=3.43;ReadPosRankSum=0.117;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr9	79973073	rs143971072	T	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	79974399	rs7043232	G	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	79984149	rs73449984	A	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	79986015	rs17081163	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	79986057	rs3737289	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	80018376	rs12352196	G	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	80022415	rs2025846	A	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	80040425	rs28395812	G	A	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	80044056	rs2296781	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	80049298	rs1801258	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	80262497	rs7033216	T	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	80430830	.	T	C	37.74	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	80868354	rs3824547	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	80881771	rs1065334	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	80912115	rs2277148	G	C	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	80915403	rs10121107	A	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	80919756	rs3739474	T	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	80921446	rs944513	G	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	80932574	rs3780194	T	A	1901.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	80943271	rs3758203	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	82006605	rs61731303	C	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	82187750	rs1934610	A	G	10101.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr9	82189914	rs2791566	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	82308670	rs7025437	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	82320887	rs4877147	A	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	82333000	rs7022923	G	A	10939.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	82333010	rs7039108	T	C	10480.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	82335240	rs10217418	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	82335292	.	GGT	G	198.74	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.08;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	82337870	rs113916919	A	G	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	84202825	.	G	GTGTGTGTGTGTGTGTGTCATCCCGCC,GTGTGTGTGTGTGTGTCATCCCGCC	470.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=163;set=Intersection	GT:AF:DP	0/1:0.33:72
chr9	84202884	rs11792087	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	84235728	rs59790457	C	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	84235790	rs114915120	C	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr9	84248203	rs113273526	CGTGTGTGTGTGT	C	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.34;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	84267021	.	T	TAC	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.042;QD=13.34;ReadPosRankSum=-0.148;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr9	84267147	rs2228173	T	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	84268878	rs2796447	A	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	84275014	rs2627002	C	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	84275095	rs2796450	C	T	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	84275256	rs36108203	C	CA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.596;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr9	84530498	rs114426311	C	A	18192.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=-0.222;QD=25.73;ReadPosRankSum=-1.132;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,705:1.00:707
chr9	84545116	.	CTTTTTT	C	1672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=6.385;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=1.812;QD=35.59;ReadPosRankSum=-0.167;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:3,44:0.94:47
chr9	84607758	rs10867826	T	A	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	85597720	rs66792515	CAGAGAG	CAG,C	2780.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=116;set=Intersection	GT:AF:DP	1/1:0.99:69
chr9	85619330	.	T	TTTTATTCTATTA	813.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.25;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	85619351	rs141850659	ATTTAC	A	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	85627408	rs4146960	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	85627540	rs10121395	A	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	85627554	rs4146961	C	T	315.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	85630621	rs1976455	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=27.10;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	85677254	rs142099428	AGG	A	6705.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr9	85858003	rs58353229	C	T	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	85913862	rs58813904	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	85964450	rs4877253	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	85987879	rs57558822	GA	G	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:8,102:0.93:110
chr9	85987935	rs3739657	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	86004436	rs3739655	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	86004986	rs59288178	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	86153159	rs4529536	T	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	86238086	rs2811903	T	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	86241489	rs2780977	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr9	86241699	rs76701379	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	86242994	rs2282222	T	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	86243933	rs2811905	G	T	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	86256431	rs2811917	T	A	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	86279015	rs2781003	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	86279838	.	CAAAAAAAAAA	C	903.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.76;SOR=4.163;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	86284178	rs1044175	C	A	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	86284332	rs17086544	T	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	86292938	rs11393859	C	CT	73.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.34;ReadPosRankSum=0.253;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr9	86293532	rs113354995	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	86322316	rs112413386	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	86327898	rs10119344	C	T	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	86354511	rs4750	G	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	86354663	.	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.934;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr9	86368105	rs10868053	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	86399815	rs7021357	C	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	86407770	rs187056457	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	86485622	rs66481344	C	CT	114.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.491;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.377;QD=3.59;ReadPosRankSum=-0.839;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	86502115	.	TA	T	81.82	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.38;QD=13.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	86617265	rs1982151	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	86894087	rs35110452	C	CA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=3.121;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr9	86895089	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=1.187;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr9	86895175	rs75139211	T	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	86903205	rs11568410	C	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	86907699	rs11568415	T	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	86920117	rs36082472	GA	G	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.198;QD=5.80;ReadPosRankSum=-0.316;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr9	86920236	rs7867504	T	C	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr9	87285992	rs1211166	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	87359768	rs57332605	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	87360106	rs144586764	ACACCT	A	1050.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	87475801	rs201644979	G	GGTTT	1209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.02;ReadPosRankSum=-0.774;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr9	87563252	rs1078947	T	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	88269947	rs675837	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	88272611	rs4531129	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	88287647	.	A	ATT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.000;QD=3.77;ReadPosRankSum=0.352;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr9	88356668	rs10114338	A	C	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	88356743	rs10114347	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	88356820	rs199589522	AGGC	A	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	88431019	rs148852212	T	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	88437998	rs112238588	A	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	88464394	rs200430907	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.42;QD=29.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	88618462	rs1328923	C	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	88667582	rs10780743	T	G	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	88924057	rs4520250	A	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	88924985	rs5898925	C	CT	248.87	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,17:0.85:20
chr9	88925534	rs5898926	ATG	A	500.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	88932226	rs41316484	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	89763851	rs458983	C	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	90062805	rs11141811	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	90062882	rs11141812	C	T	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	90256827	rs3118846	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	90258248	rs3793657	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	90258412	rs10561388	CTT	C	7746.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	90258415	rs62576207	T	C	7754.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	90264758	rs2274605	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	90265015	rs3818584	C	T	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	90296696	rs2274604	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	90316635	rs148030008	ATT	A	828.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=23.68;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	90316710	rs3118858	T	C	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	90320954	rs1927973	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	90321017	rs36220123	T	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	90343456	.	A	AT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.412;SOR=1.196;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr9	90343780	rs2378757	A	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	90387628	rs7024674	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	90387805	rs9410955	A	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	90388539	rs10735592	T	A	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	90401638	rs7039358	C	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	90472942	rs7467380	T	C	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.65;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	90472952	rs7469954	G	A	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=40.99;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	90473899	rs34537969	AG	A	3591.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	90473902	rs34415878	G	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	90473914	rs7874019	A	C	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	90473973	rs7874197	C	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	90474097	rs9695836	A	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	90474105	rs146503815	GGGAAGGCCTCAC	G	2654.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	90500405	rs7850542	A	C	13608.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr9	90501448	rs4076795	C	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	90501514	rs4076794	C	G	4229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=0.425;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr9	90502458	rs10868670	T	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	90502819	rs10868671	T	C	8751.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.22;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	90503313	rs76003300	C	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	90503844	rs79474340	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	90534156	rs202161190	T	TTCTTGTCTCCCAGCGTCA	5618.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=3.018;MLEAC=2;MLEAF=1.000;MQ=58.04;MQRankSum=-0.589;QD=32.86;ReadPosRankSum=1.286;SOR=0.129;set=HC	GT:AD:AF:DP	1/1:2,169:0.99:171
chr9	90537892	rs147621256	G	C	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.24;QD=26.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	90559129	rs7027067	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	90586043	rs622418	G	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	90588814	rs570184	C	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	90588903	rs665983	C	T	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	90589016	rs666459	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	90589502	rs576555	G	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	90654133	rs12685332	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	90744643	.	T	G	97.03	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.83;QD=24.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	90746922	rs201943385	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	90747023	rs150150446	C	T	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr9	90748427	rs200718346	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	90748490	rs377470120	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr9	90748654	rs147802329	G	A	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=25.63;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	90748784	rs145057269	CA	TG	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	90748837	rs10868714	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	91083260	rs10541463	CTT	C	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.082;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:67,36:0.35:103
chr9	91360612	rs28624420	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	91628546	rs944483	A	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	91653257	rs200260394	TAAAA	T	322.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.05;ReadPosRankSum=-0.458;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr9	91656843	rs17526079	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	91656963	rs3750399	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	91661746	rs7022911	C	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	91680531	rs3818668	C	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	91793085	rs61755089	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	91927022	rs3211669	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	91934787	rs3763616	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	91978397	rs13295305	C	T	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	91978539	rs13297725	A	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	91978783	rs45515192	G	A	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	91978990	rs45615438	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	92003749	rs7465881	A	G	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr9	92011517	rs28725340	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	92011763	rs13283585	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	92018075	rs34910857	G	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	92020159	rs13287862	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	92020433	rs7856677	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	92219896	rs3138497	C	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	92219921	rs3138499	A	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	93624755	rs914928	T	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	93627484	rs4744516	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	93629347	rs1760124	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	93629630	rs7020271	T	C	11259.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr9	93629789	rs965892	C	G	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	93637015	rs2290890	C	T	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	93639803	rs1760132	A	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	93639973	rs2290888	G	C	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	93640009	rs2290887	G	A	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	93640120	rs2290886	C	T	230.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	93641175	rs2306041	C	T	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	93641199	rs2306040	T	C	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	93641282	rs2306039	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	93657761	rs158689	A	T	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.512;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	94118106	rs7019926	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	94118287	rs140810123	G	GA,GAA	1515.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=21.35;SOR=0.949;set=HC	GT:AD:AF:DP	1/2:0,55,16:0.77,0.23:71
chr9	94456490	rs923772	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	94456643	rs923771	G	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	94456705	rs923770	T	A	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	94456714	rs923769	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	94485928	rs2230578	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	94486321	rs10761129	C	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	94486688	rs10992063	G	A	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr9	94487459	rs10992065	C	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	94538167	rs3802377	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	94538200	rs3802378	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	94841980	rs10820938	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	94843200	.	G	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=271.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.045;SOR=8.121;set=HC	GT:AD:AF:DP	0/1:74,57:0.44:131
chr9	94877836	rs10992234	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	94951792	rs117054418	G	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	95013571	.	T	C	772.77	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	95036903	rs2295940	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	95042917	rs3736835	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	95050054	rs16908260	T	C	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	95219597	rs4744132	G	A	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	95237024	rs3078372	CTCA	C	2903.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	95256519	rs331380	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	95284982	rs10120210	T	G	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	95362665	rs1874128	G	A	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	95373884	rs1552908	A	G	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	95378353	rs2274413	G	A	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr9	95380726	rs2148537	G	A	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	95397418	rs1111047	C	G	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	95400642	rs41266683	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	95414726	rs7853617	G	A	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=23.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	95414828	rs7857502	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	95432002	rs754601	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	95432029	rs754600	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	95481975	rs56339669	C	G	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	95481994	rs12238691	C	T	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	95526667	rs2277164	G	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	95527083	.	A	AGCCGCC	1244.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.72;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	95527095	rs191031181	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	95571831	rs117474329	G	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	95580745	rs71364316	GT	G	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=1.371;QD=11.49;ReadPosRankSum=0.375;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:15,44:0.75:59
chr9	95618605	rs56121719	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.340;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr9	95780465	rs7048975	A	G	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	95792095	rs148514300	C	T	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	95831486	.	G	A	5160.77	.	AC=2;AF=1.00;AN=2;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	95872744	rs3819011	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	95874070	rs2027585	G	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	95874428	rs10821071	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	95875556	rs2298242	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	95875575	rs2298243	G	A	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	95887320	rs2275848	G	T	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	95896571	.	C	CGCCCGCCCCCG	312.76	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	95992213	rs7871272	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	96000622	rs1539670	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	96015256	rs4744201	C	T	10745.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr9	96015377	rs4744202	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	96015398	rs4744203	A	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	96019118	rs10122466	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	96021312	rs10761203	G	A	39858.77	.	AC=2;AF=1.00;AN=2;DB;DP=1538;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.26;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,1518:1.00:1518
chr9	96021423	rs45534637	C	T	26517.77	.	AC=2;AF=1.00;AN=2;DB;DP=1031;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,999:1.00:999
chr9	96024794	rs7854000	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	96024859	rs1936403	A	G	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	96025717	rs10649709	C	CAG	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	96025771	rs6479467	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	96026122	rs147436035	T	TG	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	96030230	rs7856268	T	C	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr9	96031262	rs1936401	T	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	96051521	rs2169756	A	G	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	96052141	rs10579716	CAG	C	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	96052179	rs2306183	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	96097747	rs78436873	C	T	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.99;QD=25.90;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	96338940	.	C	A	154.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	96338989	.	C	A	1548.77	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	96714338	rs59397123	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	96827123	rs10993039	C	G	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	97054889	.	TTGTGTG	T	623.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	97062295	rs34433105	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	97080944	rs150455117	GAGA	G	2773.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.56;QD=43.34;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	97329737	rs10657369	C	CAG	5478.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	97329822	rs2987883	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	97349666	rs573212	C	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	97365642	rs9695	G	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	97365720	rs1769257	T	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	97365869	rs148942437	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	97369083	rs2297084	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	97369149	rs1769259	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	97372133	rs28369731	TC	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	97379965	rs28369710	G	A	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	97382668	rs16910744	C	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	97420023	rs7028725	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	97426330	rs34080503	T	TA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=10.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-2.179;SOR=2.664;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr9	97427581	rs12344517	T	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	97572192	rs115476220	A	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	97729886	rs16911884	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	97729934	rs16911886	A	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	97730244	rs72750344	C	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	97822941	rs1888944	T	C	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	97863947	rs7029888	C	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	97873957	rs4647534	A	G	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr9	97934367	rs1800360	T	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	98056009	rs139112583	T	C	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	98218474	rs5899258	G	GC	4172.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	98221861	rs2236406	T	C	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	98224360	rs2274692	C	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	98229297	rs2274693	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	98229389	rs2066829	C	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	98230924	rs35352942	AT	A	244.19	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr9	98231100	rs115556836	G	A	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	98232410	rs147497556	C	G	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	98236304	rs79032709	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	98236397	rs58989502	A	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	98240120	rs2297086	G	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	98241378	rs2066831	G	A	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	98241423	rs2066832	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	98242984	rs2297088	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	98270316	rs139100790	TGTGA	T	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	98270646	.	T	TGCC	563.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	98278644	rs28591501	C	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	98669620	.	G	GTT	49.14	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.29;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	98678164	rs683829	G	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	98685797	rs3824492	A	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	98691137	rs2274654	T	C	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	98694641	rs10760675	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=25.49;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	98717248	rs114829331	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	98734670	rs3088294	C	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	98783187	rs115392372	T	C	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	98801276	rs75729479	CG	AA	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	98801296	rs34191478	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	99003264	rs2066485	C	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	99013616	rs8190541	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	99013663	rs408876	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	99060612	rs7029101	T	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	99060882	rs3925451	G	A	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	99113444	rs114277330	A	G	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	99150779	rs7861768	A	G	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	99154933	rs116829439	G	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	99160369	rs374810647	CAAAAAAA	C	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=17.404;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.319;QD=26.52;ReadPosRankSum=0.385;SOR=3.011;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr9	99212524	rs191766212	G	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	99212909	rs754559	G	C	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	99212930	rs754560	T	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	99233176	rs34151859	CA	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.393;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr9	99233431	rs35109507	CT	C	153.27	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,12:0.86:14
chr9	99250463	rs7030316	C	T	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:3,384:0.99:387
chr9	99258675	rs112765851	T	TACC	15132.73	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:4,343:0.99:347
chr9	99286048	rs16911080	T	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	99301510	rs16911150	C	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	99325165	rs180908945	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	99413852	rs28555085	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	99413924	rs28377520	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	99417331	rs57656890	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	99522173	rs61735019	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	99522671	rs41281908	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	99537348	rs113196824	T	TTTTTTTG	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=62.57;MQRankSum=0.000;QD=8.03;ReadPosRankSum=1.021;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr9	99538068	rs73536607	C	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	99538098	rs73536610	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	99538136	rs75538926	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	99538484	rs73536613	A	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	99581676	rs34073647	G	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	99581811	rs4645656	C	T	7396.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	99589315	rs79734289	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	99637582	rs115534688	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	99711193	rs7026211	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.11;QD=25.24;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	99711888	.	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.91;QD=24.93;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	99721795	rs7858159	G	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.05;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	99722013	rs143987089	C	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr9	99797760	rs7875800	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr9	99798607	rs150953918	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	100041610	rs2255135	C	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	100041876	rs2255139	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	100043680	rs116568086	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	100054705	rs2615143	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	100057297	rs41281922	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	100069900	rs3214072	A	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	100074282	rs141171940	TTGC	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	100075702	rs7856924	T	C	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	100079386	rs41281928	G	A	12627.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr9	100080563	rs143236420	T	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	100087345	rs3747496	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	100092968	rs113264216	A	AGAGGAG	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=45.32;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	100105442	rs13286510	T	A	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	100105735	rs1947717	T	C	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	100107884	rs10122063	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	100108003	rs9696167	T	C	103.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	100111583	rs149670626	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr9	100116833	rs10125198	G	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	100124787	rs3802471	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	100132194	rs2169456	C	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	100132829	rs2306090	T	C	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	100133093	rs2306092	A	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	100139161	rs11581	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	100139182	rs898869	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	100190972	rs10817568	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr9	100240915	.	A	C	2085.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	100361864	rs958346	C	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	100366953	rs2805779	A	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	100388197	rs2773347	C	T	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	100431142	rs10115149	C	T	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	100433233	rs2805837	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	100459578	rs1800975	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	100616583	rs3021523	T	C	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	100617375	rs7046645	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	100675816	rs1127703	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	100684645	rs3824496	C	T	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	100684719	rs3183928	A	C	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	100684757	rs3183927	A	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	100692237	rs79474766	T	TA	470.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	100698361	rs78165469	T	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	100700242	rs199724877	C	CT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.523;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr9	100745902	rs3739672	A	G	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr9	100767530	rs1131641	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	100774646	rs987142	A	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	100819070	rs3199064	T	G	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	100819192	rs3739670	C	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	100822940	rs7846880	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	100823084	rs13049	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	100843417	rs4237190	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	100849500	rs1059273	G	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	100854765	rs10818475	C	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	100854920	rs4743163	C	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	100881525	rs2761063	C	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.80;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	100961928	rs73657117	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	100963653	rs3739668	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	100965472	rs3739667	C	T	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	100970881	rs10985441	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	100971348	rs3739666	T	C	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr9	100973178	rs3832623	A	AGAGGCCT	4077.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	100983566	rs7855855	C	G	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	100995721	rs879369	A	G	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr9	101006216	rs10818667	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	101006436	rs10818668	C	A	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	101006443	rs10818669	T	C	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	101052858	rs2304391	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	101053076	rs5010004	C	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	101053087	rs1897949	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	101056009	rs10818743	T	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	101056108	rs34701111	T	C	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr9	101056122	rs10985765	T	C	7356.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr9	101073337	rs73490796	A	T	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	101125148	rs514993	C	T	9849.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr9	101147787	rs111409348	A	AG	1333.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	101147811	rs10986085	G	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	101147997	rs3205936	G	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	101156418	rs7025048	T	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	101243021	rs2779547	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	101243364	rs2808557	T	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	101258881	rs1000440	T	C	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	101304302	rs35449008	A	G	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	101340301	rs2808536	A	C	6966.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr9	101340425	rs3750343	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	101340440	rs2808537	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	101513483	rs79497996	A	G	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	101518825	rs79414550	G	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	101533220	rs6415847	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	101536213	rs115807585	C	T	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	101552663	rs75634918	C	T	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr9	101585444	rs2295922	G	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	101602171	rs2277189	C	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	101606549	rs1885608	G	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	101748356	rs2075663	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	101749472	rs55925225	C	T	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	101749498	rs2075664	C	A	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	101759387	rs58938824	C	T	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	101767382	rs41316954	C	T	365.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	101767385	rs41305481	A	G	365.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	101777906	rs73503738	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	101782768	rs12335383	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	101785558	rs7848837	T	G	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr9	101785598	rs7861925	G	T	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	101785633	rs7851787	T	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	101787017	rs7028686	T	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	101796906	.	T	TCTCCCTC	641	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=1;HapScore=3;MGOF=49;MMLQ=28;MQ=57.45;NF=0;NR=12;PP=641;QD=55.6666666667;SC=AGAACTTTCTTCTCCCTCCTC;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=12;WE=101796914;WS=101796885;set=Platypus	GT:AD:AF:DP	1/1:2,12:0.86:14
chr9	101804503	rs73503762	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	101814626	rs4142986	C	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	101818716	rs11788317	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	101822220	rs4480177	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	101822302	rs7031588	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	101822400	rs7047475	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	101824662	rs73503789	C	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	101831113	rs4742758	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	101831995	rs10519	G	A	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	102067532	rs151087474	G	A	9159.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr9	102589219	rs3832634	G	GT	2931.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	102591042	rs12344570	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	102595685	rs10988904	C	T	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	102609639	rs7039228	T	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	102713580	rs1997368	G	A	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	102713591	rs3739794	T	C	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	102778480	rs10819718	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	102780721	rs4743375	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	102814585	rs202031558	T	TA	784.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr9	102860928	rs6479001	G	A	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	102988234	rs56840267	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	102988328	rs61147858	CTT	C	1496.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	103027226	.	CT	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.096;QD=1.59;ReadPosRankSum=-1.825;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:124,49:0.28:173
chr9	103046916	rs11790431	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	103054951	rs2787374	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	103059176	rs41274951	C	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	103059476	rs7864494	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	103060386	rs3813712	T	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	103065884	rs3923501	C	T	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	103090328	rs143830136	TTAAA	T	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	103108941	rs2151131	C	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	103111418	rs41274961	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	103114793	rs1930244	G	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	103114876	rs11791943	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	103275692	.	T	A	20	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=16;HapScore=2;MGOF=16;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=20;QD=27.3856062736;SC=TTTTTTTTTTTAAATCAGCTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=103275700;WS=103275682;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	103340369	rs1226590	G	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	103340875	rs1226589	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	103348634	rs2780956	G	A	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	104071417	rs115763885	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	104075042	rs76739666	A	G	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	104079706	rs16920154	T	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	104124664	rs2229594	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	104133628	rs1572983	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	104238142	rs15889	A	C	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	104324066	rs182703853	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	104385712	rs10989564	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	104385813	rs10989566	A	G	48.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	104449063	rs2506354	C	T	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	104449098	rs10989591	C	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	104499575	rs1337677	T	C	13626.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr9	105405415	rs10820216	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	105419490	rs73661934	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	105419536	rs73661935	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	105419559	rs73661936	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	105757558	rs10739861	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	105757756	rs1341205	A	G	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	105765465	rs80140014	G	A	6264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.200;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.57;ReadPosRankSum=0.152;SOR=0.549;set=HC	GT:AD:AF:DP	1/1:3,252:0.99:255
chr9	105765610	rs2066261	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.823;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	107266596	rs7049042	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	107266774	rs1949755	C	G	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr9	107266844	rs1403812	A	G	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	107266943	rs1403811	G	A	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	107267304	rs7030820	C	T	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	107298147	rs74894567	T	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	107331504	rs7026705	C	A	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	107360768	rs11314210	GT	G	2040.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	107360826	rs1851725	A	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	107360851	rs1523678	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	107360922	rs1851724	A	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	107361111	rs6479259	T	C	8109.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	107361129	rs4117966	C	T	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=25.89;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr9	107361178	rs202235686	TGTTA	T	2472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=4.878;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-14.250;QD=3.81;ReadPosRankSum=-7.392;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:549,100:0.15:649
chr9	107361346	rs2417534	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.72;QD=28.51;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	107361439	rs4629933	G	C	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.99;QD=40.31;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	107361449	rs146576115	T	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=47.38;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	107361451	rs201540433	GC	AG	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=46.19;QD=45.69;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	107361460	rs116283639	G	A	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.86;QD=45.54;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	107361490	rs7042502	A	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.23;QD=26.04;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	107361599	rs6479260	G	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.57;QD=26.83;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	107361710	rs7856737	G	A	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	107366884	rs7856643	C	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	107367008	rs10156474	T	C	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	107367392	rs143198170	TGTTA	T	12238.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	107367431	rs1851716	A	T	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	107367612	rs55706329	C	T	7269.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.96;MQRankSum=4.020;QD=22.72;ReadPosRankSum=6.235;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:18,302:0.94:320
chr9	107367664	rs143760725	AGC	A	8410.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.23;QD=44.27;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	107367841	rs10991326	A	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=24.10;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	107380177	rs1813819	A	G	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr9	107380215	rs993658	T	A	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	107380414	rs2900373	C	A	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	107380571	rs4743728	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	107457275	rs10820709	A	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	107457532	rs10761073	C	T	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	107510178	rs147856422	AGGGGC	A	3902.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	107515214	rs2274870	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	107547622	rs1331924	C	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	107547872	rs61741359	C	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr9	107548493	rs2740485	G	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	107550645	rs146814933	CA	C	1211.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	107550683	rs41422749	C	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	107553185	rs2020927	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	107553478	rs4149331	A	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	107554069	rs2066720	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	107555711	rs4149327	C	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	107556958	rs78268193	T	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	107566877	rs2777801	C	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	107576822	rs9282540	G	A	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	107578478	rs2230807	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	107583530	rs41371845	T	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	107586753	rs2066714	T	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	107591272	rs2853579	G	T	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	107593182	rs4743763	A	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	107620867	rs2230806	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	107621140	rs2243313	A	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	107624029	rs2230805	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	107624123	rs34203904	CA	C	127.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;MQRankSum=0.945;QD=11.55;ReadPosRankSum=-0.160;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr9	107651348	rs7341705	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	107651526	rs2275545	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	107651534	rs41537052	C	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	108059561	rs327993	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	108059598	rs5899653	GT	G	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	108059694	rs2089807	C	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	108060515	rs2036876	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	108120506	rs7040751	T	C	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	108120818	rs7024985	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	108128048	rs7860321	C	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	108136820	rs7048586	C	A	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	108147627	rs2771034	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	108147683	rs16924542	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr9	108147763	rs3199966	T	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr9	108275013	rs142680826	TGTG	T	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	108275777	rs10739910	T	C	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	108366499	rs34006675	G	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	108456888	rs2271247	A	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	108467850	rs2271246	C	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	108468129	rs3817141	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	108483741	rs7859253	G	A	69.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr9	108521693	rs10759135	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	108522175	rs10114077	C	T	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	108536426	rs11330639	AT	A	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	109687288	rs1000152	T	C	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	109689859	rs3814540	T	C	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	109691676	rs3814538	A	G	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	110047132	rs10733562	G	C	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	110047316	rs10739234	A	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	110080967	rs1805332	A	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	110081018	rs1805335	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	110086149	rs1805334	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	110093970	rs3056494	CA	C	2278.80	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:23,142:0.86:165
chr9	111616818	rs3750466	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	111625913	rs4978370	A	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:6,202:0.97:208
chr9	111631647	rs3763644	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	111637136	rs149721955	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	111637237	rs145319352	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr9	111637304	rs2027433	G	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	111637331	rs1981268	CC	AG	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	111637935	rs12002774	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	111641081	rs115472775	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	111642000	rs142241038	C	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	111644396	rs2275495	G	A	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr9	111651497	rs3780508	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	111651497	.	TAT	CAC	813	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=27;MQ=60.0;NF=14;NR=6;PP=813;QD=43.3233937431;SC=GGGCAAACACTATCTCTGGAC;SbPval=0.58;Source=Platypus;TC=20;TCF=14;TCR=6;TR=20;WE=111651507;WS=111651487;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	111651499	rs3780509	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	111653460	rs3737309	A	G	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	111653606	rs2230795	C	T	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	111659021	rs2275626	T	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	111659483	rs2230793	T	G	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	111660851	rs2230792	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	111660925	rs16913665	G	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	111661150	rs4978760	G	A	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	111661947	.	T	TA	178.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-0.126;QD=13.75;ReadPosRankSum=-0.842;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	111662726	rs1341216	CG	TA	7822.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	111665872	rs35455790	G	A	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr9	111668438	rs4369056	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	111670707	rs838824	T	C	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	111674892	rs10979608	G	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	111679747	rs34189987	C	CA	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.149;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:14,27:0.66:41
chr9	111684989	rs3750457	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	111685078	rs3833703	C	CAT	10118.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	111685129	rs10521092	A	T	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	111712907	rs115474920	C	T	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	111712910	rs2780334	G	C	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	111712924	rs2289481	G	C	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	111732588	rs7043345	G	A	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	111754288	rs838836	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	111782670	rs10816767	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	111798415	rs73654217	T	C	124.98	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:2,6:0.75:8
chr9	111798423	.	T	TAA	88.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.58;ReadPosRankSum=-0.000;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:2,5:0.71:7
chr9	111798751	rs2256253	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	111812825	rs614253	C	T	3090.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.846;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=93.973;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-2.775;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:24,158:0.87:182
chr9	111813023	rs7048412	T	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	111843055	rs497196	A	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	111868937	rs146786481	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	111869016	.	C	CA	48	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=13;HapScore=2;MGOF=24;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=48;QD=17.6666666667;SC=ACTTATCAGGCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=111869024;WS=111869006;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	111870700	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=25.817;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.505;QD=0.78;ReadPosRankSum=2.035;SOR=4.752;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr9	111899928	rs10759329	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	111903890	rs11421991	G	GA	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr9	111911775	rs1533641	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	111929420	rs10979723	C	G	275.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	111929421	rs10979724	G	C	275.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	111938756	rs151048554	AAC	A	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	111945166	rs10122682	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	111954684	rs144897366	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	112017761	rs76418746	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	112025204	rs12351634	G	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	112082707	.	C	G	986.77	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	112151349	rs1371787	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	112153719	rs144611920	G	C	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	112170701	rs35463120	T	TAAAC	2228.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr9	112172477	rs2275699	T	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	112219474	rs3793524	C	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	112225531	rs62576448	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	112225774	rs2274786	T	C	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	112225832	rs3808877	C	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	112542926	rs75587497	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	112629397	rs7044189	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.27;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	112629444	rs72383578	CTGTGTGTG	C	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	112629858	rs2769154	A	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	112629941	rs41306465	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	112642756	rs10816904	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	112898327	rs1475612	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	112899361	rs4978872	A	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	112900199	rs914358	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	112918531	rs10759392	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	112918581	rs7862044	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	112918815	rs61170397	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	112924558	rs2148989	A	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	112963504	rs10120707	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr9	112963702	rs4978888	G	A	9402.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr9	113006420	rs5843	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	113007289	rs4135220	T	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	113007319	rs4135219	TGAA	T	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	113013606	rs997392	C	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	113086282	rs76104654	C	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	113128844	.	GA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.970;QD=0.92;ReadPosRankSum=1.701;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr9	113132466	.	A	ATGTG	591.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	113139713	rs7873506	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	113139783	rs2077800	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	113149612	rs114581956	T	C	2649.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.037;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.53;ReadPosRankSum=1.470;SOR=0.434;set=HC	GT:AD:AF:DP	1/1:1,107:0.99:108
chr9	113163357	rs77157659	A	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	113166697	rs1410049	T	A	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	113168344	rs7850488	G	C	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	113169630	rs7046213	TG	CA	12143.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr9	113192387	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.798;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr9	113192403	.	G	GGT	562.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=1.369;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr9	113192427	rs3739450	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	113192773	rs3739448	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	113207962	rs7847560	A	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	113208250	rs7863519	T	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	113212205	rs2095294	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	113213726	rs4421419	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	113218098	rs112071235	T	TAAAGA	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	113219779	rs7875113	A	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	113220277	rs11405869	T	TG	135.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	113233956	rs7860284	C	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	113243810	rs3841727	CCTGTCTA	C	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	113265448	rs10120982	A	G	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	113275109	rs75247072	C	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	113308284	rs2991363	A	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	113449271	rs7869057	G	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	113490776	rs10817087	C	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	113491000	rs147019531	A	AT	935.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr9	113530130	.	C	T	4624.77	.	AC=2;AF=1.00;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	113538291	rs16915380	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	113538347	.	ATT	A	85.06	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,4:0.80:5
chr9	113547001	rs572189	A	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	113547322	rs484010	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	113548111	rs60715454	CAT	C	113	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	114124456	.	G	GA	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.062;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr9	114125835	rs2297524	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	114148496	rs4978994	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	114187679	rs201456238	TAA	T	1235.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	114187961	rs16916096	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	114192972	rs7873716	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	114206518	.	T	TA	59.50	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr9	114293036	rs371268678	AATATATATATATATATATATAT	A,AAT	506.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/2:0.62,0.38:13
chr9	114326479	.	C	A	395.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr9	114326557	rs199591989	TTTA	T	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.35;ReadPosRankSum=1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr9	114336884	.	TA	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.58;ReadPosRankSum=0.001;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr9	114345585	rs116678107	C	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114348513	rs2273786	G	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	114359624	rs1053959	C	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr9	114366028	rs966626	T	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	114366094	rs966627	G	C	7628.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr9	114371322	rs4978450	T	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	114371493	rs12351897	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	114375224	rs114833396	C	T	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	114449219	rs10537471	CT	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.780;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr9	114453925	rs1322254	G	T	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	114454580	rs1475110	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	114454732	rs12343237	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	114456322	rs113054343	T	TTAAG	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	114462322	rs6477845	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	114464190	rs28371380	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	114464487	rs1407390	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	114467442	.	A	AATATATAT	659.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	114467475	rs12343996	A	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	114468966	rs7036568	A	C	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	114469078	rs10125413	T	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	114469156	rs34421217	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	114470106	rs7854652	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	114470138	rs7868266	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	114475196	rs12337339	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	114475262	rs6477846	T	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114475404	rs28551718	T	G	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114480339	rs1322256	G	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	114480562	rs1322257	A	G	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	114484682	rs1337581	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	114485910	rs12344677	G	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	114490308	rs7470491	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	114508525	rs77078438	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	114510482	rs79218649	G	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	114537978	rs440164	A	T	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114543400	rs2786632	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	114659643	rs3780520	A	G	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	114659661	rs3780519	A	T	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114677046	rs140717465	TTTTTG	T	1993.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	114811154	rs1980739	C	T	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	114814643	rs16916617	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	114814828	rs7034341	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	114814899	rs7034671	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	114905717	rs80332994	C	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	114919707	rs700105	A	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	114937659	rs7024998	C	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	114982463	rs7855745	T	C	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:4,220:0.98:224
chr9	114982549	rs7869523	C	T	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr9	114986021	rs34621641	C	CAGAA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114990841	rs111362962	T	TTATACTATA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114990872	rs7026917	C	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	114993508	rs943620	C	T	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114997288	rs2274519	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	115014799	.	G	GAA	40	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=0.9998;HP=11;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=40;QD=26.0;SC=TTTTAGCTTAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=115014807;WS=115014789;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	115024695	rs10981334	G	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	115024971	rs3843823	G	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	115030570	rs7870866	C	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	115030590	rs4500150	T	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	115038100	rs4979093	T	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	115051546	rs11792085	A	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	115052104	rs10121087	A	G	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	115060100	rs34861385	A	AC	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	115060682	rs3808881	G	A	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	115092577	rs2418204	G	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	115092624	rs2900539	T	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	115095743	rs7040447	T	C	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	115142330	rs34308354	C	CGGG	1713.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=38.08;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	115142507	rs7867831	A	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	115179054	.	T	TA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.631;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr9	115179316	rs11447018	A	AT	1232.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	115216222	rs10538330	GATTA	G	2280.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	115249262	rs6477940	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	115249433	rs7031191	T	C	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	115381144	rs77611284	A	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr9	115450093	rs786970	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	115456350	rs143753591	G	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115567015	rs139599865	A	ATG	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	115567184	rs1891402	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	115580008	rs10117709	G	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	115598447	rs6477961	C	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	115600848	rs7023478	T	C	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	115648966	rs76031056	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115652836	rs3802492	G	A	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	115760610	rs11971	T	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	115811835	rs2274761	G	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	115818949	rs2282076	A	T	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr9	115918306	rs10121117	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	115920099	rs4344146	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	115924278	rs12378957	C	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115924973	rs10817449	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	115928275	rs3810908	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	115932150	rs113480096	T	TTTC	5459.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.044;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.68;ReadPosRankSum=0.274;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:4,127:0.97:131
chr9	115933885	rs1128118	A	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	115933978	rs1128117	G	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	115933978	.	GGC	AGA	651	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=2;HapScore=1;MGOF=78;MMLQ=27;MQ=60.0;NF=12;NR=24;PP=651;QD=19.5685520795;SC=GGGCCTGGAGGGCTAAACACT;SbPval=0.52;Source=Platypus;TC=37;TCF=12;TCR=25;TR=36;WE=115933988;WS=115933968;set=Platypus	GT:AD:AF:DP	1/1:1,36:0.97:37
chr9	115933980	rs1128116	C	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	115934022	rs5900041	A	AACCTGGATT	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	115934078	.	C	CT	37	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=15;HapScore=2;MGOF=386;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=37;QD=10.25;SC=CATCAAGTCTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=115934086;WS=115934068;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	115938750	rs17762224	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	115946170	rs10981674	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	115950706	rs10435864	A	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	115952708	rs112547187	C	G	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	115968609	rs4281172	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	115969433	rs5900043	T	TAGA	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	115983540	rs2233914	G	A	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	115985499	rs4560868	G	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	116021183	rs2233917	G	A	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	116022450	rs2233918	G	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	116028559	rs10124895	C	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	116034806	rs113916493	G	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	116037894	rs3810919	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	116038180	rs10116039	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	116044998	rs11552582	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	116046780	rs17764013	T	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	116048755	rs4979231	G	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	116048874	rs4979232	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	116050720	rs36114176	CT	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	116059733	rs3750535	A	T	89.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	116060124	rs3750534	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	116060221	rs3750533	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr9	116060487	rs3750532	T	C	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	116079221	rs148625959	C	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	116080917	rs74999440	A	G	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	116091113	rs12348236	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	116091342	rs3810921	T	C	7685.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	116091367	rs79611441	C	A	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	116091399	rs115679389	G	A	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	116094114	rs138026671	C	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	116094446	rs77743730	C	T	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	116116483	rs10981762	A	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	116116626	rs10981763	C	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	116124454	rs58536514	GGTGTGT	G	276.75	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	116124523	rs7041125	C	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	116130510	rs113186853	ATC	A	6639.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	116131869	rs10115141	G	A	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	116151191	rs1805313	A	G	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	116152969	rs34009418	T	C	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	116154422	rs116243288	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	116356373	rs12350531	G	C	11553.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr9	116356516	rs12341266	A	G	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr9	116356529	rs10817493	C	G	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	116357408	rs884992	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	116359339	rs1051013	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	116791005	rs75102283	C	T	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	116791161	rs7030167	T	C	12412.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr9	116794784	rs2116407	A	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	116795061	rs41277651	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	116810204	rs12378906	G	A	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	116812084	rs7856141	C	T	11351.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr9	116822510	rs80057939	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	116822595	rs113004896	A	ACTC	4782.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	116822610	rs2269456	A	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	116822650	rs2269454	T	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	116823490	rs56699313	G	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	116840552	.	G	A	977.77	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	116855776	rs76303905	G	A	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	116856889	rs1465660	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	116857656	rs7036734	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	116858625	rs6478062	T	G	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	116859769	rs3810929	T	C	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	116918394	rs7860877	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr9	116930880	rs34973417	C	T	16579.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr9	116958214	rs2567710	C	T	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.58;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	116958214	.	CAC	TAT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=1;MGOF=21;MMLQ=27;MQ=60.0;NF=52;NR=51;PP=2947;QD=20;SC=TTTCCTGCCTCACCCACCTTG;SbPval=0.54;Source=Platypus;TC=106;TCF=54;TCR=52;TR=103;WE=116958224;WS=116958204;set=Platypus	GT:AD:AF:DP	1/1:3,103:0.97:106
chr9	116958216	rs2567711	C	T	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	116967263	rs2567719	T	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	116967952	rs2567720	T	C	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	116971622	rs2060133	G	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	116994025	rs902494	A	G	7441.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	116997994	rs2015408	T	C	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	117026581	rs4978576	C	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	117033028	rs34412510	T	C	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	117033096	rs2636866	C	T	7913.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr9	117038073	rs75872824	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	117044751	rs2787330	T	C	11788.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr9	117050998	rs10982134	G	A	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	117051586	rs72762675	C	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	117052738	rs11386651	G	GT	306.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	117052772	rs7018988	C	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	117053215	rs1249738	A	G	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	117053273	rs1249737	T	G	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	117054542	rs7855288	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	117064306	rs1546049	T	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	117064345	rs1546048	G	A	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	117085635	rs74594458	T	C	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	117085799	.	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=6.104;MLEAC=1;MLEAF=0.500;MQ=44.94;MQRankSum=-0.277;QD=8.96;ReadPosRankSum=-0.822;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr9	117086226	rs1111796	A	G	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	117092390	rs116200975	C	T	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=25.94;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	117092570	rs139871678	G	A	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	117092806	rs200352326	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.13;QD=31.61;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	117093007	rs115030497	T	C	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr9	117093024	rs116608376	C	T	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr9	117093130	rs77523036	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	117103838	rs59274247	T	C	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	117103973	rs2250242	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	117106136	rs16928348	T	C	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	117110112	rs1265891	T	C	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	117110160	rs145218351	T	C	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	117113322	rs73656044	C	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	117113441	rs3810934	A	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	117119391	rs60701901	G	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	117121787	rs10598072	AGC	A	4443.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	117121840	rs2787348	A	C	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	117122093	rs148253682	A	AG	8463.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	117124519	rs2636901	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	117124582	rs73656049	C	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	117127034	rs2787351	C	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	117129921	rs62640865	G	C	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	117138222	rs112223984	A	G	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	117143314	.	T	TGTAGGGGGAGGGGTGTCAGTCTCACC	498.73	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	117166338	rs6478078	G	C	9322.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	117170310	rs2274160	C	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	117188566	rs10817610	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	117188819	rs143334366	G	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	117240643	rs116554365	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=5.856;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	117390300	rs7031094	C	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	117428960	rs1055207	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	117430524	rs2296947	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	117430611	rs1359992	A	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	117430743	rs2418316	A	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	117433685	rs2296948	C	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	117433811	rs3215861	C	CA	2762.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	117552885	rs3810936	T	C	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	117553249	rs4246905	T	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	117554504	.	TACACACACAC	T	374	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=0.9990;HP=1;HapScore=2;MGOF=0;MMLQ=20;MQ=56.12;NF=1;NR=0;PP=374;QD=377.0;SC=CATATGTGTGTACACACACAC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=1;WE=117554521;WS=117554494;set=Platypus	GT:AD:AF:DP	1/1:1,1:0.50:2
chr9	117656633	rs3833492	C	CCTG	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	117666678	rs3181367	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	117668142	rs3181195	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	117692255	rs10982457	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	117692257	rs28495846	T	G	151.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=37.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	117792583	rs13321	C	G	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	117797359	rs3215885	A	AT	82.74	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr9	117803185	rs35141770	A	AACAC	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	117803271	rs2274750	C	T	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	117804544	rs1061495	T	C	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	117808785	rs2104772	T	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	117810651	rs146504512	G	A	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	117836188	rs2210108	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	117844239	rs2989519	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	117844933	rs28362059	C	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	117846450	rs1755639	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	117846580	rs1061494	T	C	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	117848112	rs1617917	A	T	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	117848394	rs1757095	T	C	12065.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,465:1.00:466
chr9	117849314	rs2992147	T	C	12643.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr9	117853022	rs944510	C	T	14058.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr9	118054182	rs2285316	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	118163563	rs2269700	C	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	118164574	rs3750505	G	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	118969686	rs11268296	T	TTATTTAAATAG	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	119109537	rs3761844	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr9	119125082	rs3747828	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	119158814	rs8456	T	C	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	119160791	rs3810939	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	119188495	rs4836708	T	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	119199485	rs7034542	T	A	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	119199820	rs7018569	C	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	119204638	rs2302827	G	A	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	119462112	rs3019	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	119495697	rs7863560	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	119770551	rs7036098	G	A	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	119903807	rs57782747	A	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	119977077	rs4543613	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	120053776	rs7848630	T	C	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	120475302	rs4986790	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	121930388	rs35224314	C	T	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	121971245	rs7862457	G	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	121976309	rs61730119	G	A	13079.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr9	123151679	rs4836820	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	123152099	rs2297457	C	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	123152241	rs2297456	A	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	123163193	rs142478904	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	123169432	rs16909747	C	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	123171755	rs2297454	T	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	123182202	rs6478475	C	T	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	123220829	rs2501727	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	123230079	rs75136083	A	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	123249744	rs2490594	A	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	123290996	rs41305509	C	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	123342259	rs932975	C	A	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	123342275	rs932974	A	G	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	123550027	rs7026635	G	A	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	123586581	rs35903891	CA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.104;QD=2.43;ReadPosRankSum=2.272;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr9	123670680	rs140731944	CTCTTCA	C	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.55;QD=43.43;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	123671520	rs2239657	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	123671759	rs12377786	T	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	123676482	rs2416805	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	123676699	rs758959	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	123723611	rs16910233	C	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	123725782	rs10659494	C	CAA	245.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	123731408	rs10985112	G	A	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	124048298	rs12683459	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	124073176	rs306785	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	124080557	rs142040190	G	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	124083593	rs149375418	A	G	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	124089464	rs115709383	T	C	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	124116695	rs167394	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	124116776	rs41316974	C	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124118253	rs58052380	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	124132309	rs142089777	C	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	124218038	rs115111958	C	T	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	124218126	rs144294298	GA	G	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124218133	rs3747845	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	124222267	rs2289068	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	124229981	rs10818542	A	G	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	124241314	rs871671	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	124241369	rs871670	T	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	124519214	rs55835505	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	124521034	rs73664522	T	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	124622513	rs7850620	A	T	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	124632735	rs4384052	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	124633096	rs4370602	G	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	124751361	rs41277110	A	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	124855220	rs61742325	G	A	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	124855718	rs111845690	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	124976475	rs62574050	C	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	124976576	rs141012050	C	T	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	125133479	rs1236913	T	C	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,329:0.99:331
chr9	125144145	rs1238420	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	125239176	rs2416862	T	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	125239253	rs1962091	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	125272957	rs71511508	G	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	125273385	rs145911830	A	AT	2862.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr9	125282393	rs1318392	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	125289083	rs16911867	A	G	9966.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,388:0.99:390
chr9	125289521	rs10818708	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	125315376	rs11412445	C	CT	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	125315418	rs1411270	G	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	125315542	rs1831369	C	T	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	125315557	rs1831370	T	C	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	125315778	rs1411271	G	C	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	125316033	rs1341042	T	C	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	125316042	rs1341043	T	C	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	125316179	rs1341044	T	G	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	125316350	rs1411272	C	T	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	125316455	rs7039436	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	125317424	rs10733658	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	125317485	rs10760239	G	T	1514.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=1.390;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr9	125330125	rs10739614	C	G	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr9	125330184	rs10985702	A	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr9	125330325	rs10985703	C	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	125330678	rs10985704	T	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	125330739	rs1999182	G	A	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	125424277	rs70157	A	G	6761.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	125424507	rs70156	A	C	16835.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,646:1.00:646
chr9	125424766	rs237620	C	G	9539.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr9	125438390	.	GGTGT	G	93.73	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr9	125486968	rs2215530	G	A	6467.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	125512193	rs10760252	C	A	11201.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr9	125512245	rs73571194	C	T	11261.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr9	125512575	rs4838012	G	A	11500.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.71;QD=25.73;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr9	125512770	rs10985760	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.67;QD=26.67;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	125512788	rs10818740	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.18;QD=45.58;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	125512795	rs10818741	G	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.93;QD=42.41;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	125512826	rs28670025	G	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	125552067	rs140865367	A	G	9261.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr9	125563456	rs76204853	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	125617391	rs1823448	C	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.73;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	125620105	rs5900549	C	CA	427.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	125620852	rs143886635	C	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	125637471	rs2596699	A	T	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	125637648	rs2596698	T	C	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	125652429	rs10818758	A	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	125652757	rs10818759	G	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	125659520	rs2793005	T	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	125659855	.	G	T	1214.77	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	125758514	rs192803325	A	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	125797631	rs146659098	C	T	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	125797918	rs71989983	CGTGTGTGTGT	C	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	125922854	rs11437080	C	CA	210.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	125932152	rs147443012	C	CAT	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr9	126028395	rs7863265	C	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	126118517	rs72433015	AGCAGAGC	A	1501.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	126125318	rs2808415	C	A	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr9	126131110	rs2488603	T	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	126133547	rs2488602	T	C	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	126135715	rs2488601	A	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	126135831	rs7848449	T	C	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	126135936	rs2488600	G	C	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:4,238:0.98:242
chr9	126136247	rs2488599	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	126144746	rs2491348	T	C	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	126144758	rs2808409	T	C	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	126145907	rs2797946	C	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	126201672	rs7872778	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	126520068	rs9785285	T	C	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr9	126531755	rs1778890	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	126555080	rs73666285	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	126641091	rs670028	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	126794642	rs143803976	C	CG	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	127032607	rs1045774	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	127075021	rs2274780	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	127083666	.	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	127083725	rs10760352	C	T	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr9	127089775	rs748741	A	G	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	127101924	rs10760354	C	T	12642.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr9	127116102	rs10818946	T	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	127177161	rs4574	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	127215167	rs59108500	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	127215344	rs7861556	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	127215772	rs72616654	C	G	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	127215778	rs67997410	C	T	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	127220952	rs12347840	T	C	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr9	127228596	rs4838184	A	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr9	127228824	rs4838185	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	127230118	rs10818977	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	127230891	rs10760365	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	127231774	rs1570580	C	G	9140.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr9	127244955	rs915034	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	127262802	rs1110061	C	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	127262864	rs1110062	C	T	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	127263084	rs1889311	G	A	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	127265286	rs115601896	C	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr9	127287169	.	A	AC	3393.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;MQRankSum=0.686;QD=28.28;ReadPosRankSum=1.923;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:5,115:0.96:120
chr9	127302278	.	T	TTAA	636.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.06;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	127302281	.	A	C	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.67;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	127302282	.	T	TCACCTTTAAGG	862.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.92;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	127302284	.	A	ATT	862.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	127302286	.	G	GCCTTAAAGCTC	1028.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.44;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	127302288	.	C	CCTTTAAGGGATTTGCCTTAAAGCTCA	209	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9990;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=1;NR=0;PP=209;QD=309.0;SC=TAGATGATGACCATGGGTTTG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=1;WE=127302296;WS=127302278;set=Platypus	GT:AD:AF:DP	1/1:1,1:0.50:2
chr9	127302289	.	CA	C	1023.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	127495647	rs141338224	GA	G	1726.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	127563364	rs913231	G	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	127566318	rs78177758	C	T	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	127566378	rs7874348	A	G	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	127570063	rs145171251	G	C	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	127572710	rs7020260	C	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	127733926	rs2289631	C	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	127757310	rs6478690	C	T	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	127765856	.	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.877;QD=0.21;ReadPosRankSum=-1.308;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:180,33:0.15:213
chr9	127782879	rs202009698	ATC	A	121	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	127904740	rs974826	G	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	127934350	rs2416954	A	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	127951072	rs57163595	C	CAATAATAATAAT	101	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	127951863	rs466994	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	127962916	rs501963	G	A	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr9	127965400	rs59356323	A	C	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	127969785	rs420423	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	127975583	rs359588	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	127975654	rs1128362	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	127995085	rs76635123	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	127995131	rs10986661	C	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	127996046	rs599063	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	128001119	rs430397	C	T	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr9	128067296	rs73668914	T	C	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr9	128067419	rs62637640	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	128074807	rs432757	T	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	128201098	rs7864593	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	128206717	rs907501	C	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	128327891	rs545320	A	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	128414522	rs16928370	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	128432307	rs73667030	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	129097817	rs1230752	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	129143242	rs917778	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	129595895	rs3118994	T	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	129812210	rs114534294	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	129831659	rs1281158	T	A	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	129928600	rs946430	A	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	129940379	rs3739556	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130080457	rs114922267	C	T	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr9	130080550	rs115831233	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	130127691	rs34477788	C	CT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.837;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr9	130164818	rs3802367	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130166382	rs10819287	C	G	2964.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.10;ReadPosRankSum=-0.230;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,121:0.98:123
chr9	130167338	rs41302651	C	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130167390	rs3824413	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	130168326	rs10987637	C	T	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	130169301	rs4075850	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	130169874	rs6635	A	G	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	130191186	rs13292096	C	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	130197225	rs3923308	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	130197414	rs4504745	A	G	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr9	130198100	rs7853047	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	130198342	rs4500179	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	130206295	rs142661397	AT	A	1459.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr9	130206762	rs2248025	C	T	14811.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:2,555:1.00:557
chr9	130210111	rs1139400	T	C	13740.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr9	130210946	rs2247573	A	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130212876	rs2247322	T	A	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	130213508	rs2244624	A	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	130216951	rs2244218	G	T	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	130219669	rs2243906	C	T	10792.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,424:1.00:426
chr9	130219743	rs2243903	T	C	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr9	130221388	rs2243767	T	C	8780.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	130236243	rs2250267	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	130241374	rs56957982	G	GCA	3043.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	130241822	rs1539569	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130242109	rs1539568	C	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	130242166	rs1539567	A	G	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	130243534	.	A	AT	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.137;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:17,37:0.69:54
chr9	130251512	rs2245677	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	130253286	rs5900748	G	GA	277.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	130258160	rs2249052	A	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	130259618	rs2248822	A	C	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	130269786	rs2245051	A	G	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	130286150	rs2251409	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	130289615	rs2243558	C	G	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	130331257	rs151147273	CCCGCTCCCG	C	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	130341095	rs4240419	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	130341253	rs4240420	A	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	130413851	rs368668044	CCT	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.376;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr9	130415941	rs57153442	C	T	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	130420813	rs2287116	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	130422128	rs17849177	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	130423271	rs372510099	CA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.856;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.573;QD=1.45;ReadPosRankSum=1.552;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr9	130427414	rs17849179	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	130427489	rs113138293	C	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	130430410	rs58889246	C	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	130446493	rs4836575	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	130452977	rs57528423	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	130457332	.	TTGA	T	3611.73	.	AC=2;AF=1.00;AN=2;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr9	130457371	.	ATGG	A	1884	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=28;MMLQ=23;MQ=60.06;NF=0;NR=76;PP=1884;QD=24.8552631579;SC=GATGATGATGATGGTGATGAT;SbPval=1.0;Source=Platypus;TC=83;TCF=0;TCR=83;TR=76;WE=130457381;WS=130457361;set=Platypus	GT:AD:AF:DP	1/1:7,76:0.92:83
chr9	130466784	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.181;QD=1.53;ReadPosRankSum=1.283;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr9	130466832	rs6478793	C	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	130474897	rs58229174	C	T	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr9	130474932	rs73600054	C	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr9	130475011	rs522328	T	C	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:3,340:0.99:343
chr9	130486915	rs2256139	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130488494	rs538927	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	130489189	rs578997	C	T	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	130489558	rs472144	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	130491726	rs555022	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	130491998	rs557630	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	130492061	rs11365077	TG	T	238.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	130493513	rs482095	A	G	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr9	130494667	rs534652	G	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr9	130494811	rs515182	T	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	130494957	rs538066	T	C	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr9	130495633	rs564754	C	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	130495890	rs3739812	A	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	130496415	rs482712	G	A	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	130497293	rs7867296	G	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	130497591	rs7848592	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	130502238	rs7852090	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	130512071	rs2233500	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	130513469	rs2233499	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	130513777	rs7036428	A	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	130516978	rs78394205	C	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	130517223	rs142611303	T	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	130517229	rs150141711	G	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	130523904	rs35019975	T	C	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	130524817	rs3962613	C	T	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	130529268	rs115584033	G	A	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	130541014	rs59549476	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	130548589	rs11403971	G	GC	1189.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	130550134	rs3217742	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130550487	rs3217744	C	T	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	130565267	rs10760502	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	130570384	rs73614240	C	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	130571050	rs73614242	G	A	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	130605348	rs7847860	C	A	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	130630430	rs6478799	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	130630639	rs913986	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	130648680	rs913983	G	A	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr9	130649111	rs4837202	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	130657020	rs5900777	GC	G	3100.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	130658463	rs73602385	C	T	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	130660078	rs116122018	C	T	5403.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	130670652	rs1043012	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	130670903	rs10760511	C	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr9	130672106	rs7026378	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	130674642	rs375999094	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	130690412	rs10760515	G	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	130698029	rs7997	G	C	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	130698043	rs6781	A	G	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	130699917	rs2274424	G	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	130700251	rs6478802	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130707081	rs2274426	A	G	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr9	130710726	rs4837212	A	G	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr9	130710791	rs4837213	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	130715922	rs2417062	A	G	10059.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr9	130829039	rs1539350	A	G	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	130854127	rs10739712	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	130860866	rs947624	T	C	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	130861039	rs947623	A	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	130864676	rs7859709	T	C	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr9	130868175	rs78274237	C	G	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	130868312	rs7864867	G	C	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	130868831	rs1418420	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	130869499	rs4837239	A	T	7391.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr9	130883511	rs2040004	C	T	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	130886906	rs4837241	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130889571	rs4837242	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	130889600	rs4837243	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	130889705	rs4837244	G	A	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	130890449	.	A	AGGTGCGTGGC	12796.73	.	AC=2;AF=1.00;AN=2;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	130890783	rs3814525	A	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	130891060	rs12377832	G	A	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	130914434	rs2232629	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	130915260	rs139141445	TGGGGCA	T	8311.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	130915331	.	G	GCA	11637.73	.	AC=1;AF=0.500;AN=2;DP=428;set=Intersection	GT:AD:AF:DP	0/1:36,350:0.91:386
chr9	130922952	rs1539351	G	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	130939825	rs45467292	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	130940121	rs4075428	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	130940822	rs3892074	C	T	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	130942972	rs45585631	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	130980937	rs2229917	G	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	130981064	rs3003602	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	130988615	rs77264652	C	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	131001692	rs10987942	G	C	14147.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,556:1.00:556
chr9	131001846	rs56084933	C	CGT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=9.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.535;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	131027982	rs7871866	G	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr9	131040874	rs56203622	T	C	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr9	131074053	.	CTCAGAAAGA	C	515	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=59.93;NF=0;NR=26;PP=515;QD=22.0779230307;SC=AGCACTGGACCTCAGAAAGAT;SbPval=1.0;Source=Platypus;TC=29;TCF=0;TCR=29;TR=26;WE=131074076;WS=131074042;set=Platypus	GT:AD:AF:DP	1/1:3,26:0.90:29
chr9	131074054	rs371914138	TCAGAAAGA	T	3044.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	131074063	rs375078342	TA	T	3038.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	131074066	rs369645449	TGGA	T	2933.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	131079424	rs2231632	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	131085373	rs3003601	G	C	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	131088076	rs2270203	G	A	7180.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	131095112	rs7850697	A	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	131095332	rs2240954	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	131110892	rs2240953	G	A	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr9	131133899	rs2286815	G	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	131155027	rs78202609	G	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	131183225	.	G	A	4524.77	.	AC=2;AF=1.00;AN=2;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	131186328	rs78986616	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	131186401	rs7038316	C	T	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	131186581	rs2286813	C	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr9	131186956	rs28567931	A	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	131191338	rs2072399	G	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	131193519	rs3174220	G	A	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	131193605	rs1009851	T	C	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	131193665	rs1009850	A	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131196334	rs2072398	G	A	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	131196334	.	GTT	ATA	1620	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=5;HapScore=1;MGOF=47;MMLQ=27;MQ=59.74;NF=28;NR=15;PP=1620;QD=38.9178575549;SC=AGGGAGGGGGGTTGTTTAACT;SbPval=0.67;Source=Platypus;TC=45;TCF=28;TCR=17;TR=43;WE=131196344;WS=131196324;set=Platypus	GT:AD:AF:DP	1/1:2,43:0.96:45
chr9	131196336	rs2072397	T	A	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	131196695	rs7258	C	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	131196704	rs7259	G	A	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	131196905	rs60807982	TGG	T	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131197896	rs7040989	G	A	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	131222541	rs6478832	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr9	131235321	rs4512487	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	131245175	rs11290748	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.760;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.536;QD=1.97;ReadPosRankSum=-0.515;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr9	131250083	rs143231078	AAC	A	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.547;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr9	131284914	rs60154464	TA	T	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.873;QD=5.51;ReadPosRankSum=0.000;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr9	131284932	.	A	C	546.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr9	131337661	rs2297769	A	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	131340306	rs4837280	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	131340639	rs1890103	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	131344607	rs5900808	GA	G	108.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	131346218	rs10760566	A	C	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	131346479	rs4240431	A	G	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	131347165	rs4836615	G	A	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	131350112	rs4837286	A	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	131374165	rs7024498	C	G	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	131375701	rs1415568	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	131380225	rs7864187	A	C	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	131380994	rs4837290	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	131389060	rs10694437	C	CAA	1761.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131389544	rs1572914	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	131390472	rs7857728	C	A	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	131392553	rs7866175	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	131398343	rs947182	T	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	131418828	rs4837292	A	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	131452121	.	C	CG	1042.73	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	131452126	.	GCC	G	1341.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=46.27;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	131452137	.	C	CG	1589.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=40.76;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	131453331	rs4837293	G	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	131455760	rs10739728	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	131456385	.	GTA	G	108.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,7:0.18:39
chr9	131465167	rs1572915	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	131467782	rs55665019	C	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	131468251	rs1572916	T	C	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	131475951	rs4837297	T	C	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	131479023	rs10739729	T	C	7084.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	131482308	rs201715851	G	A	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr9	131483690	rs111686018	A	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131483749	rs2900268	T	A	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131495681	rs7848023	A	G	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	131502112	rs2298044	A	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	131502460	rs7027146	G	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	131505092	rs10739731	A	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	131515148	rs12341940	G	T	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	131550655	rs35557291	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	131550722	rs1891076	C	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131553768	rs10760577	A	G	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	131565554	rs1572912	T	C	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	131570178	rs45609236	T	C	8461.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	131570183	rs7862546	C	G	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	131570274	rs3750323	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	131585205	rs2997919	T	C	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	131585994	rs2997918	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr9	131586374	rs7033070	G	A	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	131586558	.	GGT	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.351;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.054;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr9	131588652	rs2997914	T	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	131588813	rs6478853	C	G	12445.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr9	131588888	rs6478854	G	C	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr9	131589234	rs2977991	C	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	131592193	rs2997906	T	C	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	131715001	rs371313511	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.770;QD=1.54;ReadPosRankSum=-0.973;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr9	131742824	rs11564086	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	131743701	.	CT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.593;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:115,40:0.26:155
chr9	131749113	rs61744524	T	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131756127	rs17485590	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	131760698	rs76505497	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr9	131765987	rs10739740	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	131767668	rs2287363	A	C	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	131772389	rs3750340	T	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	131790531	rs11537529	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131799139	rs10513506	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	131799261	rs11564101	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	131811990	rs17508307	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	131843292	rs7871285	C	A	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	131848889	rs17508474	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131857630	rs2229419	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131860901	rs3118635	G	T	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	131862031	rs67023886	AAC	A	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	131862073	rs3118638	G	A	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	131866523	rs2228304	C	G	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	131866609	rs17508668	C	T	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	131871144	rs2768629	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	131871249	rs2541163	A	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	131871435	rs2541162	A	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	131872847	rs11278777	GCGCCGC	G	3242.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	131873638	rs3124501	T	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	131881572	.	A	G	384.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	131882706	rs3124504	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	131882761	rs9409311	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131891152	rs7023900	C	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	131898880	rs1536548	A	G	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	131899846	rs3118631	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	131904617	.	TTG	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.022;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr9	131904850	rs3904184	G	A	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr9	131905814	rs913272	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	132084885	rs913771	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	132377728	rs918166	C	T	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	132377900	rs918165	C	T	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	132396281	rs10819551	G	C	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	132396655	rs1558873	A	G	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	132401824	rs2302780	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	132402908	rs2241247	C	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	132404304	rs4837396	C	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	132404307	rs77888825	C	A	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	132510912	rs45460296	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	132510960	rs3205181	G	A	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	132515081	rs2241271	T	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	132572629	rs1220509	T	G	466.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.23;ReadPosRankSum=-0.662;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr9	132618578	rs4836674	T	C	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	132618807	rs7862315	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	132620224	rs2417150	A	G	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	132620364	rs10819568	T	C	6836.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	132620458	rs10819569	C	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=1.890;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	132620464	rs10760638	C	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.94;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	132620620	rs2174156	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	132620707	rs2134601	T	C	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	132620990	rs2174157	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	132623293	rs1503375	C	T	8471.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr9	132623868	rs10115249	T	C	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	132623917	rs10124224	C	A	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	132625417	rs4837419	CA	TG	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	132625602	rs2900279	T	C	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	132627480	rs913319	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	132627723	rs913320	G	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	132630231	rs913325	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	132630664	rs10602985	TGAC	T	7195.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	132631680	rs6478920	T	C	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr9	132632162	rs5900871	G	GC	525.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	132635653	rs1809959	A	G	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	132635944	rs2296787	C	G	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	132636031	rs4332226	A	G	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	132636031	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=22;MMLQ=24;MQ=59.86;NF=34;NR=50;PP=2947;QD=20;SC=GAGGTGAGCCAGTGGCCTCGG;SbPval=0.43;Source=Platypus;TC=89;TCF=34;TCR=55;TR=84;WE=132636041;WS=132636021;set=Platypus	GT:AD:AF:DP	1/1:5,84:0.94:89
chr9	132636033	rs4415421	T	C	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	132652677	rs60841376	G	GGA	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr9	132658044	rs2047837	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	132658078	rs71738364	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.788;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr9	132662786	rs1023000	C	T	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	132671020	.	C	T	423.77	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	132671359	rs3215850	T	TG	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	132672319	rs7855720	G	A	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	132678195	rs7867211	G	A	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	132681277	rs5900875	C	CT	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr9	132681619	rs1054874	C	T	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	132686186	rs4836680	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	132689671	rs4837429	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	132720720	rs11394970	G	GA	2091.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr9	132816398	rs5900882	T	TC	4567.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	132841808	rs6478942	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	132848653	rs11399718	C	CT	1255.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	132854482	rs10988589	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	132861593	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=-0.069;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr9	132862830	rs10081664	AA	TC	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	132866883	rs7868997	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	132866906	rs887536	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	132871091	rs146664980	TAGGTTCTTTTCAGTGGCTTTAAGC	T	7311.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	132872686	rs4837460	A	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	132891115	rs7853219	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	132903767	.	T	TA	311.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-2.221;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,28:0.46:61
chr9	132962801	rs7037407	A	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	132962816	rs7022964	T	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	132963115	rs887534	T	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	132963129	rs887535	G	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	132963350	rs4837482	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	132980035	rs2277198	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	132985111	rs3829905	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	132985258	rs68053432	GC	G	1527.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	132985262	rs112503385	C	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	133048501	rs6478957	G	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	133058082	rs10739777	G	A	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	133058197	rs7045548	C	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	133069946	rs28435140	A	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	133072100	rs77725894	C	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	133230239	rs181203387	G	A	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	133260353	rs11244109	G	A	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	133264059	rs35750041	GC	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.590;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr9	133266427	rs28613585	C	T	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	133270337	rs883982	A	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	133270740	rs6597641	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	133271632	rs10125531	C	T	12647.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr9	133271654	rs10118786	G	A	16516.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr9	133271663	rs12352819	C	T	15714.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	133276075	rs885531	G	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	133276330	rs885532	A	G	6852.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	133305012	rs59218805	G	A	9409.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr9	133305103	rs6597679	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	133307984	rs2282217	C	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	133472120	rs74743353	G	C	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	133488447	rs2304812	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	133488494	rs11243976	G	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	133498229	rs11444161	T	TA	315.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=2.172;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr9	133510021	rs2304808	T	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	133553993	rs7021384	C	T	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr9	133554065	rs7030674	A	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	133554189	rs7024667	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	133556930	rs12004652	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	133556992	.	T	TCGC	77.25	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=25.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	133710722	rs11433465	G	GC	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	133710740	rs11433464	G	GC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	133710804	rs7866590	T	C	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	133710819	rs11433463	T	TC	3767.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	133779448	rs11792889	A	G	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr9	133884676	rs13286358	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	133884820	rs3739512	T	G	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	133901819	rs2275137	CC	AG	16392.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr9	133911598	rs2275132	A	G	6643.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	133927878	rs10901333	A	G	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	133928088	rs12006192	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	133928345	rs12349966	C	T	11688.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,451:1.00:452
chr9	133936381	rs3824398	G	A	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	133936571	rs3739510	C	G	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	133942624	rs3765569	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	133944522	rs2275142	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.83;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	133944525	rs2275141	A	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	133948049	rs2275140	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	133962930	rs7024108	C	T	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr9	133963058	rs6597675	C	A	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	133967295	rs710074	C	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	133967310	rs10696088	T	TCA	2319.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	133978132	rs73658926	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	133978420	rs744303	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr9	133981491	rs2872823	G	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	133981629	rs2315075	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	133981721	rs2315076	T	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	133986836	rs353528	C	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	133986980	rs353526	T	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr9	133987060	rs353525	G	A	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	133993444	rs11244293	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	133996460	rs353511	T	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	133996503	rs353510	T	A	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	134020092	rs103612	C	T	9063.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr9	134064345	rs2274427	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	134067795	rs4602942	G	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	134136515	rs352952	A	G	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr9	134136677	rs352951	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	134165888	rs11244356	T	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	134183379	rs2966332	C	T	10182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=3.065;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=0.897;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,398:1.00:399
chr9	134183503	rs2986606	T	C	10328.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr9	134305447	rs112930686	CT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.381;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr9	134322324	rs2966340	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	134323240	rs2994064	A	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	134346315	rs4310250	T	C	19258.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr9	134348807	rs4276727	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	134348818	rs5900941	TG	T	1750.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	134350323	rs10736851	C	G	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	134350458	rs10751478	C	T	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	134350647	rs10793873	T	C	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	134351065	rs7858488	G	T	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	134351343	rs11243403	C	T	13577.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr9	134357289	rs12349131	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	134358657	rs10901061	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	134359918	rs10751480	G	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	134360015	rs10793874	G	T	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	134361318	rs3808829	C	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	134361581	rs10793875	T	A	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	134361627	rs10901062	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	134381874	rs144305611	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	134382673	rs6597501	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	134382875	.	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	134384277	rs11243404	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	134384500	rs11999204	C	T	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	134384513	rs28447664	A	G	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	134385436	rs2296949	A	G	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	134385599	rs2018621	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	134386675	rs4740163	T	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	134386744	rs10901065	T	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	134386903	rs10901066	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	134387315	rs10901068	C	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	134387488	rs3739494	T	C	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr9	134387539	rs59515295	G	A	2634.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-0.833;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr9	134388789	rs139747841	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	134388815	rs139273349	CCT	C	4512.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	134390672	rs137856613	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	134394163	rs1547768	A	G	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr9	134394396	rs191519212	C	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	134394646	rs2010635	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	134397594	rs140553130	C	T	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr9	134398534	rs3739495	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	134401217	rs76123723	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	134404199	rs4740260	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	134404663	rs186240562	G	A	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	134406647	rs4740261	A	G	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	134433417	rs28731115	C	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	134433463	rs4740167	T	C	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	134465398	rs3818581	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	134467578	rs3215862	GA	G	1889.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	134473517	rs2296950	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	134477387	rs3842210	AG	A	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	134479293	rs7037668	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	134480221	rs7045121	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	134480272	.	G	GGT	1274.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr9	134949155	rs200460682	GA	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.272;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr9	135073877	rs3824574	C	T	9698.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr9	135074103	rs3739928	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	135102254	rs2149171	C	T	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	135105964	rs4962173	A	G	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	135106054	rs2274854	T	A	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	135139826	rs3739927	T	C	6509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.952;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:2,260:0.99:262
chr9	135139901	rs1056899	T	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	135144723	rs2274562	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	135146993	rs7046688	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	135147275	.	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.545;QD=1.97;ReadPosRankSum=0.783;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr9	135150616	rs2296865	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	135152543	rs201575546	T	TA	1301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.662;QD=12.05;ReadPosRankSum=1.812;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:24,84:0.78:108
chr9	135153668	rs11243704	C	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	135158543	rs2296874	G	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	135158547	rs374507994	C	CA	490.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.72;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	135158619	rs2296873	A	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	135161766	rs201395158	GA	G	175.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.52;ReadPosRankSum=0.126;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	135172163	rs2296868	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	135172412	rs2296869	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	135173454	rs3831154	C	CA	3360.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	135173685	rs2296871	T	C	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	135173758	rs6597570	G	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	135187128	rs2296872	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	135205006	rs882709	G	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	135221597	rs497650	G	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	135271987	rs1166321	T	C	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	135272061	rs5900975	GT	G	153.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.425;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr9	135273507	rs569288	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	135273607	rs504525	C	G	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	135273759	rs5900976	G	GA	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	135275615	.	C	T	6512.77	.	AC=2;AF=1.00;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	135276710	rs553323	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	135285615	rs149852725	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	135373942	rs506944	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	135374898	rs562350	T	C	14856.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr9	135388799	rs577416	G	A	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	135418329	rs56229164	A	G	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr9	135418453	rs55720639	C	T	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	135418551	rs55777723	C	T	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	135470176	rs306549	C	G	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	135470414	rs306547	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	135493959	rs115870418	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	135523521	rs76833243	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	135526546	.	CT	C	415.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.358;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.000;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	135538807	rs2583805	G	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	135554566	rs371169	G	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	135562800	rs456396	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	135601126	rs28477720	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	135601354	rs396819	T	C	122.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	135602727	rs1999121	T	C	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	135603108	rs139398120	TCC	T	381.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	135773000	rs3049911	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=10.569;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.396;SOR=0.014;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr9	135863485	rs615667	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	135864279	rs605441	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	135865359	rs681470	A	G	9351.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr9	135866237	rs199618898	T	TGCTGC	2921.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	135931517	rs114135861	G	C	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	135974079	rs1062356	G	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	135977583	rs2519091	C	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr9	135978153	rs694881	G	C	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	135979751	rs598499	C	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	135983504	rs2285375	T	C	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	135983956	rs111236084	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	135984323	rs76521920	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	135985174	.	A	AT	493.73	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr9	135987421	rs58441904	G	A	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	136006424	rs73558484	G	A	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr9	136029137	rs35403335	T	A	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr9	136029474	rs35808997	C	T	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	136031346	rs2073927	A	G	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	136080888	rs114669706	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	136083580	.	T	G	53	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=47;MMLQ=24;MQ=57.59;NF=6;NR=0;PP=53;QD=14.6285354245;SC=TGGATGCACCTATCCTCCCTC;SbPval=0.01;Source=Platypus;TC=31;TCF=14;TCR=17;TR=6;WE=136083588;WS=136083570;set=Platypus	GT:AD:AF:DP	1/0:25,6:0.19:31
chr9	136083638	rs72769499	C	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr9	136083801	rs4310274	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	136132908	rs8176719	T	TC	2605.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	136133380	.	CGGG	C	2425.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	136133506	rs512770	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.56;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	136133582	rs8176712	AG	A	1647.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	136135137	.	GCTTCTGTCCACAC	G	1113.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136135195	rs549331	G	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	136135237	rs549443	AT	GC	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr9	136135365	rs624601	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	136135444	rs551322	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	136136770	rs688976	A	C	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	136150466	rs616154	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.67;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	136150484	rs559723	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	136185358	rs544622	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.51;QD=23.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	136201470	rs563666	C	A	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136213521	rs616836	T	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	136214955	rs553877	A	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	136218590	rs484248	C	A	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	136218590	.	CA	AG	65	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=0.9998;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=65;QD=59.2339374311;SC=ATGTAACTTGCATATCAAGTT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=136218599;WS=136218583;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	136218591	rs599924	A	G	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	136223221	.	GCCCCGCACCCCGCACCCCGCA	G	546.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	136223366	rs523304	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.37;QD=26.33;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	136227260	rs12763	A	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	136234124	rs1179033	A	G	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	136237672	rs56343119	C	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	136267149	rs17474001	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	136267869	rs4962139	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	136268084	rs3124747	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr9	136274057	.	TG	T	196.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.038;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr9	136274058	rs7030175	G	T	322.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.727;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr9	136274059	.	TG	T	93.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-2.116;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr9	136277480	rs2285486	A	G	5745.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	136291063	rs3118667	C	T	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr9	136291539	rs3118668	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	136295290	rs3124773	A	C	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	136298729	rs739469	G	C	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	136304497	rs3124768	A	G	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	136305439	rs2073932	G	A	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr9	136308542	rs3124767	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	136308796	rs28446901	C	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	136328657	rs3124765	T	C	10382.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr9	136340200	rs2073935	T	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	136389751	rs73553561	A	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	136390015	rs13300181	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	136401606	rs11507717	A	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	136404775	.	A	ACGGCTGTCCCGGCTGTCCCGGCTGTCCCGGCTGTCC	1042.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=80.21;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	136409529	rs11522325	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	136409580	rs9802778	T	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	136409724	rs113811900	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr9	136412041	rs11507719	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	136412170	rs2073874	C	T	10191.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr9	136412236	rs2073875	A	T	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr9	136412255	rs2073876	A	C	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	136412346	rs2073878	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	136412382	rs2073879	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	136505114	rs1108580	A	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	136508658	rs5324	G	A	15932.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:1,615:1.00:616
chr9	136509312	rs1611125	C	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	136509448	rs1611126	C	G	11951.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr9	136509602	.	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	136518097	rs77905	A	G	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	136522426	rs3025422	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	136532107	rs7854480	G	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	136536633	rs2797840	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	136536679	rs129932	G	A	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	136536793	rs2519123	C	G	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	136555629	rs886016	T	C	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	136559460	rs2073817	C	T	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	136561303	rs2502739	A	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	136561567	rs2427998	G	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	136584042	rs375745522	AG	A	7487.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=34.99;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	136629256	rs66574029	CTG	C	3547.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr9	136629298	rs2797825	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	136629399	rs2797826	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	136637177	.	A	ACACACGGCCCCGGCGGTCACTGCGTGAGGGC	2111.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=9.034;MLEAC=2;MLEAF=1.000;MQ=66.50;MQRankSum=4.561;QD=39.83;ReadPosRankSum=-0.096;SOR=2.663;set=HC	GT:AD:AF:DP	1/1:3,50:0.94:53
chr9	136637242	rs2510244	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.79;QD=29.49;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	136640226	rs2488559	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.39;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	136641235	rs667183	C	T	3220.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=-0.583;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,128:0.99:129
chr9	136641313	rs2077065	G	C	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	136643908	rs56233098	G	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	136643994	rs602990	T	C	8780.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr9	136645137	rs12555811	G	A	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr9	136648535	rs2488563	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	136648565	rs680458	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	136648606	rs1468128	G	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	136648611	rs56145872	A	AG	4352.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	136654366	rs45607334	C	T	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	136654497	rs2072059	G	A	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	136654553	rs10821524	A	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	136662928	rs7865299	A	G	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr9	136672493	rs2510246	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr9	136672529	rs2428089	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	136804211	rs2073886	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	136898820	rs56166940	G	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	136899819	rs149036183	G	GT	9920.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	136901134	rs75750280	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	136905119	rs114525584	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	136905404	rs73558792	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	136906832	rs144803180	A	AG	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	136907108	rs467317	G	A	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	136913355	rs464826	T	C	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	136916984	.	TG	T	72.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.14;QD=24.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	136916986	.	TGTGTGTGTG	T	72.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.66;QD=24.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	136916997	rs2810488	G	A	50.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.23;QD=50.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr9	137013500	rs115710638	G	A	4397.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.059;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=-0.030;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:1,179:0.99:180
chr9	137211146	rs944860	C	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	137211298	rs914847	C	T	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	137271351	rs115812862	G	A	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	137271454	rs34189335	A	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	137293761	rs2234753	G	A	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	137293881	rs34683648	A	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	137299984	rs1805340	GC	G	11469.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=2.053;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.163;QD=29.56;ReadPosRankSum=1.212;SOR=0.232;set=HC	GT:AD:AF:DP	1/1:4,384:0.99:388
chr9	137313998	rs146502962	C	T	32574.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.525;ClippingRankSum=0.000;DB;DP=1282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.121;QD=26.27;ReadPosRankSum=0.075;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:2,1238:1.00:1240
chr9	137314208	rs115035866	C	T	46708.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;ClippingRankSum=0.000;DB;DP=1832;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;MQRankSum=-0.217;QD=26.01;ReadPosRankSum=1.405;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:4,1792:1.00:1796
chr9	137320855	rs3118570	G	T	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	137321156	rs1536475	A	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	137325822	rs3132293	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	137325858	rs35551025	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	137325872	rs34630192	C	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	137541413	rs12554943	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=24.89;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	137592961	rs4341231	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	137600270	rs4841925	T	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	137600687	rs3128588	C	T	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr9	137620417	rs41310209	G	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	137623269	.	G	A	1769.77	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	137623601	rs3124310	C	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	137630386	rs373446359	A	G	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	137630568	rs3109677	C	T	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	137630587	rs3128612	T	C	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	137657653	rs12351135	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	137657671	rs111995030	C	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	137658090	rs12338381	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	137658730	rs4842159	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	137659005	rs4842160	A	T	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	137660194	rs4842162	G	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	137660375	rs10776900	A	G	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	137671774	rs77928388	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	137671814	rs34589987	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr9	137686906	rs4072883	C	T	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	137687038	rs4072882	A	G	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	137688048	rs10776902	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	137688780	rs142676375	GCCTGTCCCCTCCAAAACCCA	G	6582.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr9	137688910	rs7851810	G	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr9	137694032	rs10858281	C	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	137702200	rs3827850	G	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.77;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	137702209	rs3827849	G	A	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	137707942	rs4841934	T	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	137708803	rs3811149	A	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	137708934	rs10858282	T	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	137708960	rs10776910	A	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	137708973	rs10858283	A	G	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	137709517	rs7854010	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	137709780	rs11792894	T	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	137709795	rs7847840	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	137710961	rs10745388	G	A	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	137711997	rs2228560	G	C	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	137714027	rs9697186	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	137715150	rs3128599	AT	TG	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	137717499	rs7855787	C	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	137717610	rs7868111	T	C	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	137741411	rs139588734	G	A	10913.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.22;MQRankSum=2.577;QD=26.62;ReadPosRankSum=2.324;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:2,408:1.00:410
chr9	137741480	rs113454901	G	A	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=31.98;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	137741585	.	A	AGGATCACACCTCCCAGGAAGCACG	10313.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=2.500;MLEAC=2;MLEAF=1.000;MQ=51.55;MQRankSum=-0.544;QD=48.65;ReadPosRankSum=-1.792;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:3,209:0.99:212
chr9	137742124	rs62571442	G	T	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-30.646;QD=1.65;ReadPosRankSum=9.690;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:973,214:0.18:1187
chr9	137742280	rs373064631	T	C	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=4.280;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-16.255;QD=2.11;ReadPosRankSum=6.498;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:708,93:0.12:801
chr9	137742597	rs72502717	A	G	17721.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:11,691:0.98:702
chr9	137742694	rs72502718	T	C	14749.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:62,573:0.90:635
chr9	137772604	rs7865453	A	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	137772792	rs3128627	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	137775084	rs7024491	A	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	137775212	rs7037264	G	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	137777788	rs12684723	G	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	137779091	rs7851696	G	T	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	137779306	rs4521835	T	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	137779306	.	TGG	GGA	1281	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=6;HapScore=1;MGOF=35;MMLQ=27;MQ=60.0;NF=13;NR=18;PP=1281;QD=43.047350802;SC=CATAGTTGGTTGGGGGGTAGG;SbPval=0.57;Source=Platypus;TC=31;TCF=13;TCR=18;TR=31;WE=137779316;WS=137779296;set=Platypus	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	137779308	.	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	137801014	rs78549259	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	137801314	rs2989734	A	G	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr9	137801800	rs1071583	T	C	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	137803188	rs34307683	AT	A	67.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.40;ReadPosRankSum=0.887;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr9	137804360	rs2274845	A	G	7671.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr9	137804830	rs2070622	G	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	137805112	rs60837943	C	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	137806329	rs11421281	T	TC	12076.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	137806334	rs2989721	A	G	11970.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=46.40;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	137806344	rs3012788	C	T	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.90;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	137967701	rs730539	T	C	9656.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr9	137968919	rs61043559	G	GAA	10555.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	137968996	rs147807021	GCA	G	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.013;QD=0.72;ReadPosRankSum=1.892;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:248,35:0.12:283
chr9	137978360	rs11103667	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	137978552	rs4446800	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr9	137978638	rs695156	T	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	137979247	rs4604524	C	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr9	137980016	.	GCTC	G	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.057;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr9	137982127	rs500461	T	C	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	137982232	rs56337838	T	G	1603.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.73;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	137982234	rs10672761	G	GTT	1109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.65;ReadPosRankSum=-0.779;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr9	137982236	rs201073165	G	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.466;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr9	137988675	rs655559	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	137998806	rs9969691	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	138236031	rs914398	A	G	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr9	138236212	rs914397	T	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	138236305	rs4842254	T	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	138376649	rs3748192	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	138376972	rs3928777	A	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	138377853	rs2004074	A	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	138378856	rs2078266	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	138379002	rs1975518	T	G	2442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.002;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=1.775;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr9	138391774	rs2274652	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	138394032	.	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	138413441	.	CC	TT	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.178;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-6.460;QD=4.09;ReadPosRankSum=-0.626;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr9	138413468	.	G	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-6.257;QD=4.32;ReadPosRankSum=0.731;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:87,18:0.17:105
chr9	138413471	.	A	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-6.442;QD=4.10;ReadPosRankSum=1.344;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr9	138415201	rs56239374	C	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	138415238	rs56120410	C	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	138417166	rs73560977	G	A	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	138438189	rs141004230	G	T	278.79	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.06;QD=39.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	138438190	rs200992384	AAGGCTGGCTTCTGACCCCGTGCTCCC	A	269.76	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.06;QD=38.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	138438976	rs78161279	G	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.85;QD=46.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	138438980	rs4006724	G	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	138438982	rs4006725	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	138439005	rs504061	A	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.70;QD=26.67;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	138439090	rs111808171	C	T	5957.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;MQRankSum=-0.329;QD=25.24;ReadPosRankSum=1.079;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:2,234:0.99:236
chr9	138439189	rs148884427	G	GC	7495.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=43.33;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	138439190	rs62578296	G	T	7454.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=43.09;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	138440641	rs2853652	T	C	13355.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr9	138440728	rs3827839	A	G	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	138441685	rs112851559	G	GC	4130.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	138441760	rs7859414	C	A	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	138453811	rs697448	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	138456201	rs201358793	G	A	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	138457146	rs59058237	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	138457329	rs149314008	A	G	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	138515929	rs12336965	G	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	138515991	rs12351198	A	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	138516190	rs35762223	T	C	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	138516346	rs34217442	CA	C	5597.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	138516531	rs7466817	G	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	138557225	rs151041662	C	A	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:3,172:0.98:175
chr9	138557256	rs492708	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	138585697	rs139628460	G	T	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	138586098	rs117995308	C	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	138586309	rs484524	A	G	10411.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	138587203	rs2769033	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	138587220	rs2483364	T	C	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	138590138	rs506498	T	C	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	138590347	rs529976	C	T	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	138590680	rs474061	G	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	138590928	rs471525	C	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr9	138591230	rs558113	C	T	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	138591266	rs559326	A	G	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	138642912	rs10122976	C	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	138644203	rs10735239	T	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr9	138645716	rs12378616	C	T	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	138646881	rs4842032	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	138648813	.	GTCCCCACCC	G	2985	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=4;HapScore=1;MGOF=3;MMLQ=27;MQ=61.2;NF=10;NR=142;PP=2985;QD=20;SC=CTCACAGGGGGTCCCCACCCT;SbPval=0.52;Source=Platypus;TC=168;TCF=11;TCR=157;TR=152;WE=138648876;WS=138648803;set=Platypus	GT:AD:AF:DP	1/1:16,152:0.90:168
chr9	138648829	rs13286338	C	G	7895.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.92;QD=42.68;SOR=1.783;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	138648837	rs59909130	A	C	7837.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=5.113;MLEAC=2;MLEAF=1.000;MQ=62.10;MQRankSum=0.147;QD=42.37;ReadPosRankSum=1.733;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:1,184:0.99:185
chr9	138648838	.	G	A	7838.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=5.113;MLEAC=2;MLEAF=1.000;MQ=62.13;MQRankSum=0.147;QD=42.37;ReadPosRankSum=1.733;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:1,184:0.99:185
chr9	138648847	.	A	AC	7892.73	.	AC=2;AF=1.00;AN=2;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;QD=42.90;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	138648851	.	C	CTCCCATCT,CCCCCACCCTCTCCCATCT	8750.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=301;set=Intersection	GT:AF:DP	1/1:1.00:202
chr9	138650121	.	AC	GT	1799	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5429;HP=1;HapScore=1;MGOF=11;MMLQ=27;MQ=59.49;NF=37;NR=14;PP=1799;QD=36.3228995071;SC=GTGGCCAGGTACAGGCTGCCC;SbPval=0.57;Source=Platypus;TC=64;TCF=46;TCR=18;TR=51;WE=138650130;WS=138650111;set=Platypus	GT:AD:AF:DP	0/1:13,51:0.80:64
chr9	138656783	rs55816769	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	138656838	rs41298365	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	138657053	rs58604946	T	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	138657635	rs10117578	A	G	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	138657687	rs10120407	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	138657727	rs62583545	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	138660879	rs11103179	A	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	138662309	rs10776844	A	G	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	138662360	rs56157148	T	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	138662962	rs7869884	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	138669075	rs114229286	A	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	138669261	rs914428	G	A	9429.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	138670451	rs112557482	C	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	138679911	rs12555229	C	G	4809.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	138707727	rs913342	C	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	138713975	rs35871460	C	T	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr9	138754582	rs2039330	A	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	138816898	rs4842048	T	C	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	138816906	rs4842049	T	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	138817178	rs10776854	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	138825117	rs6569	A	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	138837113	rs10776856	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	138837958	rs2297691	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	138838140	rs7028495	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	138839888	rs2297689	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	138898893	rs4842070	C	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	138899253	rs56162840	G	GCA	5672.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	138899311	rs56102761	GCA	G	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	138903671	rs9626	A	G	7822.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	138904997	rs2280485	T	C	12383.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr9	138905094	rs111782876	G	A	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	138905136	rs2280486	C	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	138905214	rs2280487	C	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.13;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	138905220	rs12337512	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.99;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	138905907	rs72656977	T	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	138905913	.	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	138908250	rs2275107	C	T	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	138927183	rs149084098	T	C	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	139010319	rs1717447	A	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	139091797	rs1924521	A	C	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	139094773	rs2274115	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	139142487	rs73560758	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	139142668	rs73560761	C	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	139142710	rs62579871	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	139143080	rs116583388	T	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	139221567	rs72775735	C	A	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	139221808	rs144733220	ACCCCCTC	A	1000.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	139221843	rs28676496	C	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	139222174	rs28495820	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139230292	rs28447209	T	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	139230585	rs28583929	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	139235481	rs145729152	TC	T	3383.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	139235526	rs59873903	C	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	139235606	rs78403475	G	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=25.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	139243334	rs28429551	T	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	139249991	.	T	C	288	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=12;NR=0;PP=288;QD=26.8976010456;SC=GGTGACACGTTCTGGGGGAGG;SbPval=1.0;Source=Platypus;TC=12;TCF=12;TCR=0;TR=12;WE=139249999;WS=139249987;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139252495	rs3812547	G	A	13974.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr9	139257287	rs10121646	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	139273402	rs3812567	C	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	139298732	rs41298149	G	A	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	139302094	rs4880155	C	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	139333049	rs5901103	GCCCT	G	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	139360354	rs3124590	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	139369938	rs115222080	G	C	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	139391636	rs2229974	G	A	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	139396408	rs3124594	A	G	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr9	139397707	rs10521	G	A	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	139400406	rs11145764	C	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr9	139400904	rs4880098	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	139401504	rs3124596	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	139402663	rs3124597	T	C	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	139402908	rs3812603	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139403240	rs35987207	T	TG	253.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139403268	rs3125000	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139403554	rs3124598	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139405261	rs3125001	C	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	139407452	rs3812608	C	T	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr9	139407932	rs2229971	A	G	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr9	139410177	rs3124603	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139410424	rs3125006	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139410589	rs4880099	A	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	139410679	rs4880100	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139411714	rs11145767	T	C	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	139412197	rs9411208	G	A	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	139417381	rs11574872	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	139418260	rs4489420	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	139440852	rs3013307	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	139562619	rs187229244	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	139565150	rs4636297	A	G	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=43.72;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	139565150	.	ACG	GCA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=3;HapScore=1;MGOF=9;MMLQ=24;MQ=59.96;NF=56;NR=84;PP=2947;QD=20;SC=CGCATCGAAAACGCCGCTGAG;SbPval=0.59;Source=Platypus;TC=147;TCF=61;TCR=86;TR=140;WE=139565160;WS=139565140;set=Platypus	GT:AD:AF:DP	1/1:7,140:0.95:147
chr9	139565152	rs7846878	G	A	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.08;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr9	139565285	rs1140713	C	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139565479	.	TGGGG	T	1730.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.21;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139565487	.	G	T	1739.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139566778	rs77612807	C	T	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	139566823	rs1051828	A	G	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	139568325	rs145975461	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	139616742	rs945384	A	G	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	139616840	rs3739939	G	A	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	139621168	rs2275160	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	139639532	rs145717467	CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT	C	4606.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	139642961	rs2811728	G	A	8951.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr9	139649580	rs879467	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	139650060	rs2784068	C	A	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr9	139650167	.	G	GAACAGCATGGGGAACAGTGCAGGGAACCCTGCAGGGAACAGCATGGGGAACGGTGCAGGA	1648.73	.	AC=2;AF=1.00;AN=2;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=549.58;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:3,0:0:3
chr9	139650595	rs35874639	T	G	26659.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr9	139650619	rs35341952	A	G	23273.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:1,595:1.00:596
chr9	139651163	rs57411373	A	AG	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	139652338	rs9411272	C	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	139653055	rs11145867	C	T	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	139656618	rs2484658	T	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr9	139656670	rs2297722	T	C	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	139656706	rs2297723	A	C	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr9	139657834	rs9987876	G	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	139658051	rs4880070	G	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139658576	rs4880140	G	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	139685722	rs2784043	T	C	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	139685808	rs201674770	C	G	10643.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr9	139686289	rs2811788	A	G	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	139686357	rs2784042	T	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	139686556	rs2784041	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	139686949	rs2784040	G	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139687082	rs62581399	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	139690840	rs1055995	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	139693452	rs112596159	CCCTGGGG	C	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	139693596	rs945386	T	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=25.17;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	139694521	rs4546744	T	G	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	139694569	rs7859194	A	C	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	139694613	rs35342663	C	A	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	139694822	rs57277737	C	T	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	139697259	rs7047984	T	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	139699670	rs74869446	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr9	139700605	rs2811795	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	139701486	rs76153658	T	C	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	139701983	rs3739944	C	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	139739643	rs10870132	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	139744807	rs872463	A	G	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	139746992	rs10123375	G	A	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	139749067	rs7869864	C	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	139752324	.	G	A	906.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	139752899	rs2275156	T	G	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	139760830	rs76229681	CG	C	2205.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	139804274	rs4567138	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139804346	rs4448378	C	T	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	139815053	rs10781522	G	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	139818169	rs17250631	CTT	C	564.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	139820421	rs7852970	G	A	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	139836362	rs7040705	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	139837700	rs11339872	AC	A	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	139837990	rs2271872	G	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139839904	rs2071006	T	G	8262.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.118;QD=25.58;ReadPosRankSum=-0.126;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:2,321:0.99:323
chr9	139840471	rs7862602	G	T	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	139840543	rs7850844	A	G	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr9	139840859	rs908830	T	C	12768.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr9	139847570	rs884218	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	139848273	rs2271869	A	G	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	139848278	rs2271868	T	C	10485.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	139848688	rs4880175	C	T	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	139875318	.	C	CCATTCATT,CCATT	1178.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=63;set=Intersection	GT:AF:DP	1/1:1.00:24
chr9	139877698	rs968516	A	C	14823.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr9	139879067	rs2049042	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139879170	rs17578859	G	A	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	139902712	rs4880185	A	G	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr9	139906401	rs79966110	G	A	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr9	139909281	rs75458945	G	C	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	139910093	rs73668382	G	A	8896.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	139910648	rs6560657	T	C	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	139911983	rs12348881	T	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	139912484	rs908832	A	G	11733.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr9	139912593	rs13283333	T	C	9203.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr9	139913239	rs908828	T	G	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	139916547	rs55661219	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139916833	rs35590326	T	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	139923265	rs4880189	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	139925927	rs1139444	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	139929015	rs9411293	C	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	139929435	rs12337910	A	G	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	139932419	.	CT	C	491.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139937795	rs10781535	T	C	13117.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	139937799	rs10781536	G	A	12910.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	139937810	rs73668384	A	G	11582.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	139943112	rs17853460	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr9	139943705	rs115672624	G	A	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:4,343:0.99:347
chr9	139944728	rs113080211	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-1.054;QD=12.38;ReadPosRankSum=-2.638;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr9	139945051	rs7869520	A	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139946804	rs2271867	C	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.32;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	139964917	rs115453697	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	139972219	rs4073310	G	T	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	139972322	rs4073309	G	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	139973186	rs7390974	T	C	1043.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=0.158;SOR=0.638;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr9	139975108	rs9314874	T	C	4909.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-0.966;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:3,195:0.98:198
chr9	139975113	rs73668387	C	T	8766.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	139977195	rs4390039	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.39;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	139977209	rs7851653	C	T	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139980696	rs59840525	C	A	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	139981241	rs968732	GT	CG	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	139982691	rs73668389	G	A	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr9	139990546	rs12003126	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139990906	rs4880199	T	C	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	139994102	rs4880200	G	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	139996834	rs73668395	G	T	23898.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=5.722;QD=36.49;ReadPosRankSum=2.000;SOR=0.030;set=HC	GT:AD:AF:DP	1/1:5,650:0.99:655
chr9	139996892	rs377474128	CTG	C	29887.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;MQRankSum=4.061;QD=45.22;ReadPosRankSum=0.645;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:3,658:1.00:661
chr9	139996933	rs10118812	T	G	28110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;MQRankSum=-0.259;QD=37.48;ReadPosRankSum=-1.580;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,749:1.00:750
chr9	139997592	.	GTGT	G	30689.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DP=714;ExcessHet=3.0103;FS=2.063;MLEAC=2;MLEAF=1.000;MQ=59.13;MQRankSum=15.348;QD=43.72;ReadPosRankSum=1.463;SOR=0.274;set=HC	GT:AD:AF:DP	1/1:18,684:0.97:702
chr9	139997645	rs369265025	CTG	C	30473.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;MQRankSum=12.233;QD=43.41;ReadPosRankSum=1.995;SOR=0.545;set=HC	GT:AD:AF:DP	1/1:9,693:0.99:702
chr9	140000347	rs59876726	C	T	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr9	140001294	rs73668396	C	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	140001329	rs147327609	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	140001341	rs5901117	G	GAAC	2403.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	140002179	rs11998970	G	A	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.02;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	140002187	rs12000517	C	T	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	140002220	rs10117795	A	G	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	140002501	rs6420280	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	140002989	rs4880091	T	C	10087.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr9	140006425	rs10747048	C	G	10747.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	140008625	.	CCCCCGCCCGCGACCCCGCCCGGCACCCACGTGCCCCGCGA	C	3608.73	.	AC=2;AF=1.00;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	140008750	rs10747049	G	C	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.74;QD=31.91;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	140040156	rs10870196	G	A	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	140055876	rs10747050	G	A	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr9	140063587	rs150046809	G	C	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	140070369	rs72619353	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	140075181	rs73571568	G	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	140075323	rs116545473	G	A	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr9	140080583	rs3922735	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	140080910	rs148147354	GCA	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.781;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr9	140094958	.	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	140100224	rs7032361	A	G	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	140100317	rs113809617	C	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	140108857	rs73563696	T	C	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	140109730	rs61466113	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	140110274	rs7390663	T	C	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	140119572	rs7389591	C	T	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr9	140120396	rs6606566	C	T	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	140127252	rs114286327	C	T	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr9	140128858	rs35535797	T	A	7999.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr9	140130606	rs28542318	A	T	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	140130882	rs28591989	A	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	140139757	rs9775264	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	140142299	rs9330201	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	140147094	rs71387813	C	CCT	9316.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	140147152	rs28376526	C	G	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	140148051	rs28631372	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	140157429	rs13294457	G	A	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	140157460	rs13296455	T	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr9	140157701	rs56368095	C	T	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr9	140158565	rs150171369	TG	T	1463.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	140158650	rs9695897	C	T	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	140158871	rs13295537	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	140161334	rs9330192	C	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	140161631	.	TGTGGGGCTGAG	T	2990	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=24;NF=1;NR=12;PP=2990;QD=20;SC=CAGGGGTCGGTGTGGGGCTGA;SbPval=0.45;Source=Platypus;TC=22;TCF=1;TCR=21;TR=13;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:9,13:0.59:22
chr9	140161634	.	GGGGCT	G	2076.73	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=39.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	140161641	.	AGGTGGG	A	2078.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=39.22;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	140161647	.	G	A	580	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=27;NF=13;NR=13;PP=580;QD=23.6450466364;SC=GCTGAGGTGGGGCTGAGGTGG;SbPval=0.52;Source=Platypus;TC=35;TCF=17;TCR=18;TR=26;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:9,26:0.74:35
chr9	140161871	rs9802270	C	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	140161909	rs9802698	G	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	140167022	rs3204123	G	A	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	140202194	rs13288421	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	140218025	rs73668241	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	140218212	rs56750318	G	A	9056.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr9	140245644	rs115216154	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	140246050	rs11534416	T	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	140247005	rs28480070	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	140247012	rs35287538	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	140247143	rs7020732	T	G	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	140249253	rs11537108	AG	CA	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	140250818	rs7389423	C	T	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	140262218	rs11533157	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	140262426	rs11533158	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	140267455	rs76623966	C	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr9	140267650	rs28688091	T	C	292.96	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr9	140268183	rs6606585	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	140277944	rs116026671	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	140289696	rs9695232	A	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	140322404	rs28580293	C	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	140322640	rs28553346	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	140323251	rs11535664	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	140323906	rs9697151	G	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	140328077	rs35138580	C	T	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	140329265	rs28725243	G	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	140330457	rs115134072	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	140330976	rs13297080	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	140331797	rs61303368	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	140331833	rs9414731	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	140332478	rs6606582	A	G	14547.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:2,578:1.00:580
chr9	140349874	rs28585539	C	G	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	140356422	rs28452008	G	C	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	140357848	rs2275781	G	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	140357972	rs1891627	A	G	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr9	140374861	rs1891630	A	G	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	140392494	rs4962232	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	140400275	rs3750381	T	C	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr9	140409726	rs843967	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	140437392	rs3737320	C	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	140442010	rs200317697	G	A	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	140459731	.	CTCTG	C	630.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	140459754	.	TGGGTGACTGTCTGTGAGGAAGCTCCCCG	T	322.75	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=64.55;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	140483076	rs2259657	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	140605202	rs11791658	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	140638461	rs1129768	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	140652611	rs58326032	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	140656980	rs4876941	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	140671147	rs7868455	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	140672294	rs73576128	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	140678733	rs73669168	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	140685250	rs6559224	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	140686373	rs10867072	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	140686492	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.099;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr9	140705805	rs73669182	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	140707381	rs57049934	A	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	140707403	rs60520671	A	G	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	140707407	rs58155449	C	T	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	140707590	rs35943616	C	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr9	140708088	rs73669183	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	140708834	rs57642928	T	C	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	140711882	rs73578877	A	C	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr9	140728787	rs10667884	T	TTC	7715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=0.635;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:4,299:0.99:303
chr9	140777306	rs4422842	C	G	7421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.133;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=1.006;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:228,337:0.60:565
chr9	140777370	rs1110146	A	C	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:49,103:0.68:152
chr9	140954047	rs370368293	C	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	141008876	rs2229948	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	141009015	rs4876928	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	141015019	rs2278971	G	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	141015351	rs2278972	A	G	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	141015869	.	CT	C	312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=1.606;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr9	141016262	rs2278973	T	G	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	141069844	rs62581042	T	C	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=16.447;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-0.680;QD=12.47;ReadPosRankSum=-1.985;SOR=1.621;set=HC	GT:AD:AF:DP	0/1:94,108:0.53:202
chr9	141069905	rs71485051	C	T	9075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=0.193;QD=13.27;ReadPosRankSum=-0.556;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:437,247:0.36:684
chr9	141069930	rs111722193	C	T	11912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=1.775;QD=14.44;ReadPosRankSum=-3.963;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:502,323:0.39:825
chr9	141069952	rs9410185	T	C	39607.77	.	AC=2;AF=1.00;AN=2;DB;DP=965;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.02;QD=41.91;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,945:1.00:945
chr9	141069977	.	G	GAGA	22789.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=0.831;QD=27.23;ReadPosRankSum=-5.538;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:279,558:0.67:837
chr9	141069978	.	C	CCCCCGTCCTTCTCCCACCCAACGTGTACCACCACGAGGCCAGCGGTGA	22694.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DP=821;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=0.636;QD=28.19;ReadPosRankSum=-9.310;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:275,530:0.66:805
chr9	141069993	rs200245769	C	T	6777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=6.062;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-2.113;QD=16.90;ReadPosRankSum=0.939;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:225,176:0.44:401
chr9	141070116	rs376870088	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:32,6:0.16:38
chr9	141070213	rs184986292	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=4.139;QD=0.49;ReadPosRankSum=0.634;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:92,16:0.15:108
chr9	141070220	rs11137402	A	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:21,99:0.82:120
chr9	141070283	rs7868693	T	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:56,140:0.71:196
chr9	141070335	rs7868705	T	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	141071755	rs2507130	T	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.237;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr10	95074	rs6560828	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.075;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr10	95226	rs6560829	A	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	95229	rs6560830	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	226158	rs115640098	C	G	392.10	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr10	243817	rs115321270	T	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:4,49:0.92:53
chr10	282681	rs377179377	GCATACTATCT	G	99.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	282897	rs4600135	C	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	285479	rs10655220	G	GTGTT	2697.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	292927	rs2303990	C	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	294953	rs1017361	A	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	329182	rs66861796	TG	T	665.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr10	370964	rs7078788	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-3.409;QD=2.90;ReadPosRankSum=0.804;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr10	370971	rs72653036	A	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-3.309;QD=3.12;ReadPosRankSum=0.205;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr10	370972	rs72653037	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-3.309;QD=3.20;ReadPosRankSum=0.205;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr10	370976	rs72653038	A	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-3.514;QD=3.55;ReadPosRankSum=-0.027;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr10	370977	rs3123241	A	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	375270	rs78566794	G	T	326.81	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr10	394714	rs4880610	G	A	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	395266	rs4880611	T	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	395463	rs4242754	G	A	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	402356	rs77703732	C	T	5436.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:33,239:0.88:272
chr10	410297	.	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.304;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr10	410825	rs10795053	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	428503	rs4881200	A	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	429903	rs11289740	GA	G	106.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.146;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr10	429977	rs10904083	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.221;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr10	435880	rs4881219	G	C	1091.31	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:5,46:0.90:51
chr10	444997	rs6560836	C	T	5172.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:51,225:0.82:276
chr10	445061	rs6560837	C	T	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	459940	rs4881274	G	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:24,129:0.84:153
chr10	468748	rs4881290	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	486983	rs61837201	G	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:11,66:0.86:77
chr10	530644	rs1539231	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr10	687569	rs1631975	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	696237	rs10904535	G	A	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:46,252:0.85:298
chr10	708192	rs3853289	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	1042023	rs10665098	A	AAAC	4613.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	1043058	rs1250887	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	1046480	rs74260825	CTT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-2.505;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr10	1046712	rs2306409	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:153,47:0.23:200
chr10	1054007	rs11253565	G	T	398.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=1.625;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr10	1054276	rs10904595	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	1054444	rs11253567	A	G	4717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.841;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:46,221:0.83:267
chr10	1055271	rs10904597	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr10	1060218	rs3207775	G	A	5049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=0.081;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:59,235:0.80:294
chr10	1061625	.	GCTGAGCA	G	1341	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=107;MMLQ=24;MQ=60.0;NF=14;NR=7;PP=1341;QD=65.0952380952;SC=GGTCCTGAGCGCTGAGCACTG;SbPval=0.72;Source=Platypus;TC=26;TCF=16;TCR=10;TR=21;WE=1061639;WS=1061615;set=Platypus	GT:AD:AF:DP	1/1:5,21:0.81:26
chr10	1061767	rs2306405	G	A	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:31,181:0.85:212
chr10	1065457	rs41314629	T	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,18:0.23:77
chr10	1066710	rs34407608	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr10	1068739	rs116683128	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.246;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:144,33:0.19:177
chr10	1068802	rs3750729	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	1068849	rs3829163	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr10	1070461	rs3793777	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	1070710	rs12357207	C	G	5415.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:58,247:0.81:305
chr10	1081791	rs146706331	G	GCCTGGCCCA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.740;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.086;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:235,32:0.12:267
chr10	1081882	rs7075695	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.108;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:380,76:0.17:456
chr10	1081944	rs11396609	G	GT	1251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.271;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:37,82:0.69:119
chr10	1082004	rs147471156	A	G	118.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.814;QD=4.57;ReadPosRankSum=0.745;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr10	1082004	.	AC	GG	60	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=24;MQ=58.61;NF=0;NR=3;PP=60;QD=37.8226249541;SC=GTGCAGTGGCACGATCTCGGC;SbPval=1.0;Source=Platypus;TC=18;TCF=1;TCR=17;TR=3;WE=1082013;WS=1081994;set=Platypus	GT:AD:AF:DP	0/1:15,3:0.17:18
chr10	1082005	rs139987514	C	G	118.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.814;QD=4.57;ReadPosRankSum=0.746;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr10	1089616	rs11250238	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=2.737;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:151,25:0.14:176
chr10	1093992	rs4880759	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.609;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	1095122	.	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=1.160;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr10	1126293	rs7087381	T	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:15,78:0.84:93
chr10	1126619	rs7084283	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	1142208	rs10794716	T	C	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr10	1232500	rs7924253	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.992;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:247,55:0.18:302
chr10	1262872	rs34113348	AG	A	6299.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	1279908	rs35363755	C	CTT	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	1437135	rs140143392	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr10	1779349	rs3750684	G	A	5903.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:40,264:0.87:304
chr10	3124516	rs4881074	G	A	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:32,155:0.83:187
chr10	3124542	rs144015599	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.167;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:198,35:0.15:233
chr10	3124681	rs148699492	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.095;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr10	3143283	rs55882340	T	A	575.79	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr10	3143643	rs4881080	A	C	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	3145885	rs10903966	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	3145906	rs11251719	A	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.021;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:113,17:0.13:130
chr10	3146180	rs2306294	C	T	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:42,191:0.82:233
chr10	3147501	rs4881081	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.80;ReadPosRankSum=0.045;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr10	3147508	rs4881082	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.44;ReadPosRankSum=0.197;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	3147581	rs111575676	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.063;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr10	3150293	rs116032793	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.522;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr10	3150898	rs11251721	C	T	6134.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:59,281:0.83:340
chr10	3154534	rs2306304	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	3155620	rs1052309	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=2.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=2.076;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:293,42:0.13:335
chr10	3160913	rs3829912	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	3160917	rs3829913	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	3161004	rs114799123	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.562;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:161,37:0.19:198
chr10	3161131	rs3829914	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.192;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr10	3161148	rs3829915	G	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	3161216	rs3829916	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr10	3161253	rs9423464	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr10	3161270	rs143742962	A	ACT	82.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=0.253;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	3161271	rs141433931	G	T	91.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.35;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	3162033	rs6602025	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	3167463	rs2306309	T	C	6168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.862;QD=29.38;ReadPosRankSum=0.901;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:56,154:0.73:210
chr10	3167463	.	TCA	CCG	2344	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=60.08;NF=32;NR=40;PP=2344;QD=33.2981649286;SC=CCGTTTCCTCTCATTGCTTTT;SbPval=0.48;Source=Platypus;TC=100;TCF=43;TCR=57;TR=72;WE=3167473;WS=3167453;set=Platypus	GT:AD:AF:DP	1/0:28,72:0.72:100
chr10	3167465	rs3816703	A	G	6168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.874;QD=29.95;ReadPosRankSum=1.060;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:56,150:0.73:206
chr10	3167527	rs142773253	ATTC	A	1412.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr10	3171995	rs2279211	G	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	3172121	rs1052333	C	T	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	3172229	rs4598574	G	A	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	3172267	rs4381274	A	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	3172299	rs4390256	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	3175541	rs3740613	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr10	3178815	rs9063	G	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.786;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr10	3178865	rs543	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr10	3178905	rs7673	T	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	3178908	rs542	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	3178964	rs71497863	GAATT	G	211.75	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	3179703	rs4881107	C	T	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	3179708	rs4881108	A	G	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	3180227	rs6901	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	3180298	rs10175	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:30,142:0.83:172
chr10	3180316	rs11414	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.069;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:152,27:0.15:179
chr10	3180343	rs2388559	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	3181003	rs2279217	A	G	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	3181282	rs2279220	G	A	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	3183747	rs7094698	A	G	7938.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	3183755	rs151114717	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.597;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:264,39:0.13:303
chr10	3185393	rs4881110	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	3185780	rs150035636	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.118;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:87,19:0.18:106
chr10	3185798	rs3736093	T	C	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	3186458	rs3752803	C	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	3186723	rs9423496	G	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	3187749	rs3758632	A	G	107.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	3187924	rs3758631	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	3188071	rs3758630	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	3189380	rs3740607	C	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	3190265	rs4881111	A	G	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	3190298	rs4881112	C	T	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	3190393	rs148781123	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.313;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:175,31:0.15:206
chr10	3193557	rs60985673	TAAAAAAGAAACAA	T	497.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr10	3197856	rs3765101	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.459;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:171,30:0.15:201
chr10	3200292	rs3182535	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.674;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr10	3201072	rs3814593	G	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.101;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr10	3201097	rs3814594	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.375;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:127,24:0.16:151
chr10	3202065	rs4242746	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=0.358;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:211,31:0.13:242
chr10	3202140	rs4242747	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.040;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:302,45:0.13:347
chr10	3208557	rs12359035	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.758;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr10	3214516	rs4881118	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.980;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr10	3214995	rs34460808	AC	A	1429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.069;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:421,93:0.18:514
chr10	3215111	rs9423713	G	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.752;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:202,54:0.21:256
chr10	4867313	rs2961562	A	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	4868303	rs11252766	T	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr10	4868445	rs2924275	G	T	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	4872930	rs61745201	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.795;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:116,22:0.16:138
chr10	4879465	rs2961584	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	4884784	rs2924269	T	C	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	4889403	rs12240276	C	T	7097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=-3.015;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:62,326:0.84:388
chr10	4889525	rs2961597	T	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	4889732	rs74111762	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.468;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:196,28:0.12:224
chr10	5005855	rs116910432	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.01;MQRankSum=-2.369;QD=10.35;ReadPosRankSum=-0.566;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	5005860	rs41305661	G	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.01;MQRankSum=-2.369;QD=10.35;ReadPosRankSum=-1.534;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	5008383	rs7908994	C	T	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:39,165:0.81:204
chr10	5009347	rs4445550	A	G	1046.78	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr10	5009364	rs2904802	T	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr10	5009449	rs7076886	T	C	124.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	5010572	rs1138600	A	G	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.20;QD=23.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	5014545	rs67671072	T	TA	2865.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:33,146:0.82:179
chr10	5019959	rs8483	G	A	1876.98	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:10,83:0.89:93
chr10	5032149	rs141200635	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=52.84;MQRankSum=0.692;QD=1.15;ReadPosRankSum=-1.270;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr10	5032286	rs72638704	C	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-8.172;QD=0.44;ReadPosRankSum=0.974;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chr10	5038149	rs201332177	G	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=-1.115;QD=1.53;ReadPosRankSum=0.217;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr10	5041296	rs35767584	C	A	84.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.15;MQRankSum=0.210;QD=14.14;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr10	5042784	rs13945	G	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-7.752;QD=1.06;ReadPosRankSum=1.245;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr10	5043504	rs67362530	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	5045804	rs115767964	C	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr10	5120157	rs4881396	G	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.00;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	5120332	rs7894134	T	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	5136499	.	A	G	20	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=2;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=20;QD=27.3856062736;SC=AAGACTGCCTATGTACCTCCT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=5136507;WS=5136489;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5136651	rs12529	C	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:86,34:0.28:120
chr10	5138607	rs7741	G	A	1537.98	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:9,66:0.88:75
chr10	5139685	rs12387	G	A	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	5139815	rs2245191	C	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.059;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:75,12:0.14:87
chr10	5144562	rs35558480	C	CG	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	5147909	rs2275928	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	5149557	rs143558407	TAAC	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.673;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr10	5149703	rs3209896	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	5196273	rs1781930	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	5196479	rs1334471	C	T	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:27,114:0.81:141
chr10	5200076	rs11253019	A	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:5,62:0.93:67
chr10	5200739	rs5782810	T	TAGG	2960.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	5200861	rs2020172	C	A	1079.56	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,47:0.89:53
chr10	5202104	rs2801889	C	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.39;QD=24.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5202241	rs1761599	C	T	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.56;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	5203864	rs11253021	C	T	3856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.071;QD=16.55;ReadPosRankSum=0.839;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:51,182:0.78:233
chr10	5203944	rs11325738	AC	A	3558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.205;QD=24.71;ReadPosRankSum=-0.981;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:27,117:0.81:144
chr10	5204676	rs7080497	A	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	5204928	rs7097295	C	T	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:22,129:0.85:151
chr10	5242346	rs7099651	G	A	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	5244441	rs2151896	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	5246511	rs11253041	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=2.014;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:201,37:0.16:238
chr10	5246584	rs11253042	C	A	4597.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:48,210:0.81:258
chr10	5246670	rs1413781	A	C	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:23,152:0.87:175
chr10	5247754	rs11253043	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.037;QD=2.02;ReadPosRankSum=-1.056;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:197,47:0.19:244
chr10	5254804	rs11253045	G	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:4,78:0.95:82
chr10	5255025	rs4880718	A	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	5258955	rs2050309	C	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5260553	rs1413622	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr10	5260812	rs2398157	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	5415954	rs10904481	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.642;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:287,56:0.16:343
chr10	5435918	rs7097775	G	A	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:32,160:0.83:192
chr10	5436260	rs7910290	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:22,82:0.79:104
chr10	5436487	rs6601957	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr10	5437365	rs11253156	A	G	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:41,222:0.84:263
chr10	5446632	rs10904491	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr10	5446794	rs7477466	C	T	2746.94	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:18,126:0.88:144
chr10	5446942	rs4881435	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	5446965	rs4881436	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	5471200	rs4604777	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	5495157	rs11253185	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.033;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr10	5495218	rs4567355	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	5498248	rs4242790	G	T	621.96	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr10	5541181	rs10904516	T	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=1.130;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:196,43:0.18:239
chr10	5541183	rs10904517	C	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.930;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:191,42:0.18:233
chr10	5557990	rs73604768	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.169;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:139,23:0.14:162
chr10	5558145	rs5782832	G	GC	6200.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:39,187:0.83:226
chr10	5558349	rs4072067	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	5567366	rs1142825	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.056;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:317,54:0.15:371
chr10	5682641	rs7896492	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	5684342	rs6602421	C	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5684534	rs61006671	T	TA	466.87	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr10	5684616	rs56802263	G	GTT	171.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	5693379	rs6602483	A	G	6763.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	5708360	rs75474563	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.427;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr10	5708420	rs6602613	T	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.719;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:79,28:0.26:107
chr10	5708434	rs56178329	C	G	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.687;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:77,23:0.23:100
chr10	5766337	rs10737018	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	5777271	rs146574498	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.800;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr10	5781628	rs2254067	T	G	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=1.783;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:21,125:0.86:146
chr10	5781800	rs61731327	A	T	7297.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:73,328:0.82:401
chr10	5781969	rs2797486	A	T	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:23,128:0.85:151
chr10	5784509	rs2797488	G	A	496.79	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr10	5788110	rs200661404	A	ATT	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	5788608	rs2797491	G	C	5741.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:54,252:0.82:306
chr10	5789966	rs3082216	CCTGCCTCAG	C	2280.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr10	5790420	rs2669142	T	C	5441.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:40,244:0.86:284
chr10	5790616	rs2797492	A	G	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:27,112:0.81:139
chr10	5798562	rs114632074	T	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,69:0.77:90
chr10	5804425	rs116768481	A	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	5804531	rs2797501	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-1.171;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	5805087	rs139115917	AAC	A	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.510;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	5808759	rs77492921	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr10	5815628	rs57379866	CAA	C	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:32,6:0.16:38
chr10	5837063	rs115448047	A	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	5838880	rs11255237	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	5842427	rs150257304	C	T	624.78	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr10	5842509	rs3793714	A	G	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:21,145:0.87:166
chr10	5853923	.	T	TAA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.480;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	5855422	rs57315999	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.841;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr10	5904760	rs7923781	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr10	5920121	rs1052420	T	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.392;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:270,46:0.15:316
chr10	5920244	rs61729846	T	C	1779.78	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:12,80:0.87:92
chr10	5922186	rs811561	T	A	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	5924942	rs617165	C	G	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	5925971	rs631947	C	A	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	5926079	rs3750657	AT	CC	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.012;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-1.246;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:88,18:0.17:106
chr10	5926131	rs7919785	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=2.062;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr10	5926154	rs7907053	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.574;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	5931348	rs192437556	G	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	5936425	rs12781700	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	5937257	rs77543613	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr10	5945091	rs114503920	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-1.709;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr10	5948638	rs7082434	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.724;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr10	5953148	rs2296138	A	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:19,71:0.79:90
chr10	5955818	rs143392776	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.056;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:196,31:0.14:227
chr10	5956073	rs113662312	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:5,42:0.89:47
chr10	5960213	rs112279282	G	A	1920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.56;ReadPosRankSum=1.447;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr10	5960221	rs113026774	T	C	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.50;ReadPosRankSum=1.160;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr10	5960499	rs2274027	A	G	418.88	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr10	5966192	rs2274030	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	5966535	rs59730206	CT	C	137.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-0.319;QD=12.52;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr10	5966854	rs11594794	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr10	5967292	rs73616478	T	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:27,84:0.76:111
chr10	5978411	rs646406	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	5979117	rs2274033	T	C	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:37,119:0.76:156
chr10	5990899	rs4367845	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	5991344	rs41294013	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr10	5998285	rs3136627	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.005;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:133,30:0.18:163
chr10	6000409	rs12260233	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	6001696	rs3136618	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	6002368	rs2228059	T	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	6005674	rs3136614	G	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	6010774	rs8177675	T	TG	6194.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:44,221:0.83:265
chr10	6042034	rs10795731	C	T	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=-1.337;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr10	6061277	rs7069976	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	6061781	rs10752175	T	C	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	6062051	rs9804284	T	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	6063674	rs942200	T	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	6148286	rs116636263	A	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.102;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr10	6150828	rs374720400	GCTCTGTC	G	1069.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	6150837	.	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	6150843	.	G	A	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150844	.	C	A	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150845	.	C	T	1051.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	6150848	rs75593307	ACCTG	A	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	6152134	rs115735191	G	A	4633.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:48,212:0.82:260
chr10	6154308	rs12242912	C	T	5015.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:46,221:0.83:267
chr10	6156118	rs10795823	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	6188591	rs7074372	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.818;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr10	6245317	rs6602514	G	T	1495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-0.618;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:14,68:0.83:82
chr10	6259032	rs113178056	G	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:31,150:0.83:181
chr10	6261704	rs1557111	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	6262702	rs2230271	C	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.365;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:450,106:0.19:556
chr10	6262845	rs60679017	C	T	5882.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:42,244:0.85:286
chr10	6264883	rs2230272	G	A	2063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-0.792;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:41,95:0.70:136
chr10	6265027	rs2298102	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr10	6271036	rs41291281	G	C	7520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=3.062;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:88,341:0.79:429
chr10	6368707	rs7087657	C	T	494.28	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr10	6368721	rs7074209	G	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	6368724	rs7074211	G	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	6368760	rs7087682	C	T	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	6392467	.	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.570;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:234,35:0.13:269
chr10	6392683	rs17154307	A	G	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:23,91:0.80:114
chr10	6472962	rs601150	T	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	6498799	rs2296123	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	6527143	rs2236379	G	A	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr10	6533877	rs3815975	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	7239386	rs2762604	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.689;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr10	7262571	rs111678664	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.504;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr10	7318724	rs7075434	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	7318803	rs7097601	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	7319078	rs4338435	C	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.56;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	7319088	rs4611096	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	7423960	rs2254756	T	C	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	7601824	rs111905334	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.994;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr10	7605077	rs61199416	TC	T	4605.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:27,142:0.84:169
chr10	7605101	rs10795551	A	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	7605457	rs10737022	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr10	7611836	rs78236573	A	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	7618501	rs2275068	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	7618686	rs2275069	T	G	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	7618993	rs10458802	G	A	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	7618997	rs10458803	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	7622047	rs12256183	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	7622075	rs12262854	G	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	7627746	rs12413114	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	7627792	.	A	AAAAC	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.764;QD=9.39;ReadPosRankSum=0.368;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:26,48:0.65:74
chr10	7627804	rs12218509	C	A	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=45.51;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	7627812	.	A	AG	5463.73	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=42.35;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	7629168	rs945149	C	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	7629203	rs4747526	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	7629411	rs4747527	T	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	7629417	rs4747528	A	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	7659272	rs150273439	ATAACT	A	1481.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr10	7679393	rs6602256	C	T	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	7682870	rs17142884	C	G	5302.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:82,242:0.75:324
chr10	7745492	rs2298319	A	C	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:13,56:0.81:69
chr10	7749346	rs114596385	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	7763661	rs7075296	A	G	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr10	7765661	rs2274456	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	7765695	rs77536729	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	7769101	rs2274455	T	G	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr10	7769604	rs2277226	A	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr10	7773976	rs7098319	AT	GC	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,102:0.76:134
chr10	7776853	rs76526090	T	A	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:23,144:0.86:167
chr10	7788495	rs7912419	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	7795911	rs7342066	A	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.162;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:254,39:0.13:293
chr10	7798150	rs41290295	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.917;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr10	7804308	rs1980856	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	7808086	rs3736968	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-2.353;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr10	7830064	rs2070594	A	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=7.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.257;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:182,30:0.14:212
chr10	7830319	rs1475406	G	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:41,8:0.16:49
chr10	7838208	rs1244418	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.533;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr10	7841201	rs192307649	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	7844906	rs1244431	T	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.944;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr10	7849688	rs4655	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.794;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr10	7866268	rs7070208	C	G	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	7866557	rs1244471	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,7:0.15:46
chr10	7866576	rs1244472	A	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr10	8007560	rs1244229	T	C	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.879;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:22,64:0.74:86
chr10	8019124	rs10795584	A	G	853.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.72;ReadPosRankSum=-0.754;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr10	8093034	rs501764	G	T	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	8093185	rs485411	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	8093318	rs477691	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr10	8106231	rs139096916	G	GTT	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	8106248	rs201042786	TTTTC	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.88;ReadPosRankSum=2.208;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	8111409	rs422628	C	T	8224.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr10	9449134	rs376343702	CAG	C	2994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.305;QD=3.72;ReadPosRankSum=0.244;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:681,125:0.16:806
chr10	9449465	rs61843465	A	G	27190.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.69;QD=38.57;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,705:1.00:705
chr10	9449482	.	C	CACACAGAGCGCCTCAGCGGGGTCCTAG	24772.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;MQRankSum=2.938;QD=38.35;ReadPosRankSum=3.207;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,640:0.99:646
chr10	11047207	rs2773499	C	G	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.636;QD=25.93;ReadPosRankSum=-0.527;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr10	11047218	rs72365970	GGAGAGAGA	G,GGA	1450.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.257;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.05;MQRankSum=1.333;QD=29.01;ReadPosRankSum=-1.736;SOR=1.755;set=HC	GT:AD:AF:DP	1/2:5,18,27:0.36,0.54:50
chr10	11060149	rs73571676	G	A	9996.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr10	11060220	rs71491559	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.029;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr10	11207166	.	T	TC	26	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=26;QD=26.0;SC=CTCCCGAGCCTCCAAGATGTC;SbPval=1.0;Source=Platypus;TC=11;TCF=9;TCR=2;TR=2;WE=11207174;WS=11207156;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr10	11299735	rs2277212	A	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:12,71:0.86:83
chr10	11308790	rs72051267	TTC	T	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=33.03;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	11316987	rs2244573	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.002;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:175,33:0.16:208
chr10	11356093	rs5783207	T	TTTTG	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	11356160	rs2246449	C	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	11360673	rs2279809	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	11362789	.	G	GT	1018.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.554;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:52,83:0.61:135
chr10	11367780	rs3832668	CT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.867;QD=1.47;ReadPosRankSum=1.428;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:125,35:0.22:160
chr10	11505175	rs3740204	A	G	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:15,108:0.88:123
chr10	11527786	rs3824642	T	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:27,106:0.80:133
chr10	11532658	rs17150444	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr10	11532758	rs882206	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.375;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr10	11569722	rs17150509	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	11653512	.	CCGGCG	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.700;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr10	11653772	rs145486773	C	CGCGGCCCCGG	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr10	11785045	rs60651509	G	A	123.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.58;ReadPosRankSum=0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	11797322	.	CAA	C,CA	1149.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.299;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.830;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:12,49,34:0.52,0.36:95
chr10	11797436	rs7899215	T	C	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.295;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:568,176:0.24:744
chr10	11797467	rs7910140	G	A	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=2.468;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:460,145:0.24:605
chr10	11797619	rs902892	C	G	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.742;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.316;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:132,32:0.20:164
chr10	11805354	rs12258196	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-2.483;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:189,31:0.14:220
chr10	11805357	rs10906011	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-2.320;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:188,28:0.13:216
chr10	11912431	rs12253600	C	T	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	11978499	rs7921794	T	G	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	12046455	rs9943399	T	A	82.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.57;ReadPosRankSum=1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	12071397	rs11257490	G	A	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:44,181:0.80:225
chr10	12110917	rs73577217	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr10	12111090	rs1279138	T	C	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	12123363	rs1722446	T	A	538.88	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr10	12123667	rs1722445	A	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	12148259	rs1701472	A	C	3763.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=-0.614;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,154:0.99:155
chr10	12148286	rs1615510	T	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	12149939	rs1722462	C	T	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	12159647	rs2399771	A	G	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	12159844	.	GATCTCCCCTCTCCT	G	998	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=998;QD=347.0;SC=AGGTGATGCAGATCTCCCCTC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=12159869;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr10	12159845	rs34396265	ATCTCCCCTCTCC	A	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	12159859	rs376672314	ATT	A	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	12159861	.	T	A	51	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=4;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=51;QD=28.5904041824;SC=CCTCTCCTATTTTTATTTATT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=12159869;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	12160602	rs11257543	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.120;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr10	12160606	rs11257544	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.921;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr10	12160623	rs11257545	C	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	12160632	rs112318056	T	C	940.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.45;ReadPosRankSum=-1.275;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:6,40:0.87:46
chr10	12171740	rs11257552	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-2.345;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr10	12172548	rs10906082	G	T	614.96	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr10	12191933	rs10466280	C	T	5131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=-0.139;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:38,228:0.86:266
chr10	12195862	rs4426057	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr10	12195881	rs2895501	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr10	12198019	rs3758376	G	A	323.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr10	12198884	rs2245590	C	T	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr10	12199821	rs12250051	G	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:6,57:0.90:63
chr10	12200125	rs4750175	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:10,60:0.86:70
chr10	12202866	rs10906092	A	T	1025.90	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:5,45:0.90:50
chr10	12203197	rs2399784	C	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	12209752	rs6686	T	C	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:46,195:0.81:241
chr10	12209936	rs71513318	GT	G	874.84	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:8,48:0.86:56
chr10	12212186	rs11257577	T	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-2.089;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:129,21:0.14:150
chr10	12215870	rs35088067	CT	C	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr10	12227067	rs2140660	C	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	12277145	rs35566655	GT	G	1231.80	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:5,49:0.91:54
chr10	12288366	rs11818932	G	T	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:8,96:0.92:104
chr10	12288444	rs11818953	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr10	12292286	rs12779647	C	G	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:36,141:0.80:177
chr10	12292344	rs10951	A	G	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:36,180:0.83:216
chr10	12292454	rs1051055	A	G	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr10	12595037	rs2815629	G	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	12595427	rs1077745	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	12695177	rs7896283	A	G	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:19,94:0.83:113
chr10	12811529	rs74121109	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	12856057	rs10795984	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.426;QD=1.44;ReadPosRankSum=-1.767;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr10	12866356	rs2482023	A	C	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	12870642	rs55888132	G	GA	294.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.680;MLEAC=2;MLEAF=1.000;MQ=59.46;MQRankSum=0.560;QD=13.38;ReadPosRankSum=1.592;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr10	12870714	rs2482075	A	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	12870941	rs187718671	C	A	1256.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.96;ReadPosRankSum=0.661;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:2,32:0.94:34
chr10	12870947	rs113542304	A	T	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.57;ReadPosRankSum=0.942;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:2,29:0.94:31
chr10	12870950	rs112898823	C	G	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.46;ReadPosRankSum=-0.356;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:1,29:0.97:30
chr10	12940377	rs10752280	T	C	116.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.59;ReadPosRankSum=-0.566;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	12940455	rs10906249	A	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	13152400	rs11258194	T	A	2389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=0.012;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:25,106:0.81:131
chr10	13152504	rs34617995	GT	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.64;ReadPosRankSum=0.487;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	13154485	rs113955718	C	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-1.818;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:136,39:0.22:175
chr10	13158262	rs2244380	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	13160878	rs80327830	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr10	13166076	rs523747	A	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	13167860	rs676302	G	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	13178697	rs10906310	C	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-1.544;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:142,23:0.14:165
chr10	13206233	rs7090944	A	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.506;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:238,48:0.17:286
chr10	13212884	rs2147279	C	T	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	13214661	rs141445340	G	A	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:65,150:0.70:215
chr10	13214812	rs6602637	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	13224886	rs3765520	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.701;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	13230837	rs6602641	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.708;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr10	13230950	rs2296222	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.208;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:199,43:0.18:242
chr10	13231194	rs2296221	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	13234356	rs7905784	A	T	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:57,202:0.78:259
chr10	13237015	rs10796036	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	13264280	rs2281797	C	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	13275510	rs7893239	C	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	13275514	rs4750327	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	13275553	rs3829925	T	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr10	13275676	rs3829926	T	C	8741.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	13275691	rs10796042	G	T	6227.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:53,273:0.84:326
chr10	13276179	rs942418	A	G	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	13320236	rs11133	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr10	13320411	rs825625	A	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	13325946	rs648173	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	13330402	rs473407	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	13334058	rs1408364	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	13337588	rs1747682	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	13341836	rs511959	G	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	13341889	rs732704	C	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	13341900	rs512109	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	13375906	rs10752297	T	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:34,131:0.79:165
chr10	13378445	rs2275128	A	G	6082.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:51,271:0.84:322
chr10	13489201	rs11408564	A	AT	4336.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=36.44;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	13538928	.	CAA	C,CA	1368.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.430;QD=13.69;ReadPosRankSum=-0.286;SOR=0.830;set=HC	GT:AD:AF:DP	1/2:12,40,48:0.40,0.48:100
chr10	13542097	.	C	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.241;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:124,27:0.18:151
chr10	13570569	.	GGCGGCAGCGGCGGCA	G	52.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-0.132;QD=1.17;ReadPosRankSum=1.754;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr10	13570578	.	GGCGGCA	G	1606.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,40:0.89:45
chr10	13570673	rs10906401	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	13628937	rs139542521	C	G	178.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr10	13633928	.	GT	G	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.501;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:131,41:0.24:172
chr10	13653490	rs2478121	C	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	13653653	rs1135102	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-0.521;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:218,35:0.14:253
chr10	13658335	rs2253308	G	A	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	13693725	rs58861783	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr10	13693759	rs57424487	TAGTTCC	T	1705.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr10	13693803	rs75453310	C	T	2936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-1.404;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:47,135:0.74:182
chr10	13693839	rs61253007	C	G	4849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=1.635;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:81,225:0.74:306
chr10	13696335	rs55879243	A	T	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:31,110:0.78:141
chr10	13696350	rs56102374	C	T	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:42,155:0.79:197
chr10	13696570	rs10906442	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	13699133	.	CCGCCCCCCG	C	6994.73	.	AC=1;AF=0.500;AN=2;DP=298;set=Intersection	GT:AD:AF:DP	0/1:25,179:0.88:204
chr10	13702231	rs74123100	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr10	13702274	rs74936412	T	C	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=0.277;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr10	13705298	rs10796108	G	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	13705307	rs55876188	ACT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.316;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr10	13705655	rs6602672	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr10	13735685	.	C	CT	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.920;QD=4.84;ReadPosRankSum=0.716;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr10	13743517	rs1541004	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.639;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:112,20:0.15:132
chr10	13782110	rs11258567	A	C	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=-1.282;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:20,51:0.72:71
chr10	13782124	rs10906462	A	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.74;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	13782605	rs6602679	G	A	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	13782735	rs77210505	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,14:0.20:69
chr10	14050161	.	C	CTGTGTG,CTG	406.92	.	AC=1,0;AF=0.500,0.00;AN=2;DP=72;set=Intersection	GT:AF:DP	0/1:0.62:21
chr10	14372258	rs1218445	G	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	14478618	rs11259096	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:11,50:0.82:61
chr10	14816424	rs139247598	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.587;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:331,48:0.13:379
chr10	14862042	rs61746971	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr10	14862140	rs61740068	C	A	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr10	14862199	rs201114666	GA	G	379.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.273;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr10	14862296	rs111868303	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=-0.385;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	14867443	rs79576512	G	A	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:18,152:0.89:170
chr10	14880306	rs370615312	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.337;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr10	14882060	rs3830599	AT	A	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.932;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	14891406	rs17155992	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr10	14891524	rs45606139	A	G	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:35,159:0.82:194
chr10	14897683	rs11818612	T	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr10	14941055	rs7896464	T	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	14976414	rs7076862	G	A	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	14981780	rs41296992	A	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-0.828;QD=16.77;ReadPosRankSum=1.018;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr10	14987123	rs41296438	C	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr10	15008356	rs6602775	C	T	620.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.608;QD=18.81;ReadPosRankSum=-1.042;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:4,29:0.88:33
chr10	15008493	rs4750568	A	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-2.003;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr10	15014369	rs1935401	C	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	15014418	rs1935400	C	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:11,51:0.82:62
chr10	15014440	rs1935399	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:26,82:0.76:108
chr10	15014698	rs4418687	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.59;ReadPosRankSum=-0.277;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	15014702	rs4295952	A	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.59;ReadPosRankSum=-0.277;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	15057310	rs10906795	A	G	2004.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.300;MLEAC=2;MLEAF=1.000;MQ=59.52;MQRankSum=-0.660;QD=20.05;ReadPosRankSum=-1.061;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:10,90:0.90:100
chr10	15058862	.	GAA	G	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=1.041;QD=6.96;ReadPosRankSum=-0.764;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr10	15091658	rs73600492	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:30,97:0.76:127
chr10	15106441	rs10906818	A	G	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:29,119:0.80:148
chr10	15107852	rs112941358	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	15121195	rs11259464	A	C	1218.80	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:8,51:0.86:59
chr10	15138615	rs7896053	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=1.195;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:186,31:0.14:217
chr10	15145855	rs15772	C	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.231;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:122,23:0.16:145
chr10	15154974	rs7072269	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	15290821	rs189871756	G	A	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:25,100:0.80:125
chr10	15296572	rs3824620	A	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	15296707	rs3780930	A	C	4499.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=-1.100;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:2,176:0.99:178
chr10	15413071	rs192904368	G	A	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=0.310;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:9,59:0.87:68
chr10	15573050	rs1041135	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	15590352	rs9333230	A	G	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	15590372	rs9333229	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	15590407	rs78721642	CA	TG	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr10	15599992	rs9333214	T	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr10	15648243	rs2282383	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.510;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr10	15649642	rs184842038	A	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=1.760;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr10	15658584	.	C	G	1129.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr10	15685983	rs4748191	A	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.459;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr10	15713507	rs7100228	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr10	15713541	rs6602051	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=1.766;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:95,15:0.14:110
chr10	15729923	rs1954181	C	T	9588.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	15761527	rs9333070	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	15824085	rs11818243	A	G	2980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.11;ReadPosRankSum=-0.475;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:25,74:0.75:99
chr10	15824092	rs7912258	C	T	3009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.80;ReadPosRankSum=-0.594;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:25,76:0.75:101
chr10	15902425	rs71493236	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr10	16547058	rs7904014	A	G	3729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=0.233;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,169:0.78:216
chr10	16553270	rs373198469	AATTC	A	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:2,29:0.94:31
chr10	16556710	rs7909832	T	C	5622.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:61,259:0.81:320
chr10	16562600	rs72772306	G	A	6078.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:70,278:0.80:348
chr10	16737157	rs201585770	G	A	1091.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.813;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:9,57:0.86:66
chr10	16737166	rs3837313	G	A	1270.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.412;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=2.501;SOR=0.481;set=HC	GT:AD:AF:DP	1/1:8,64:0.89:72
chr10	16769242	rs45619140	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr10	16796919	rs1049632	C	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.625;QD=17.56;ReadPosRankSum=-0.043;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:10,47:0.82:57
chr10	16877080	rs7898873	G	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	16878204	rs703062	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	16882518	rs703064	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	16911605	rs703075	C	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	16916607	rs3831351	GTAA	G	1422.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr10	16918972	rs1801241	A	G	5428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=-0.339;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:44,256:0.85:300
chr10	16932704	rs7087545	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr10	16943371	rs2796835	G	C	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	16948177	rs780807	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	16949401	rs780805	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-3.178;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr10	16949447	rs780804	A	C	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	16967401	rs1276712	C	T	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	16967445	rs1276713	T	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	16979566	rs2356589	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.478;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr10	16979661	rs1801234	T	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	16982244	rs2271463	G	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	16989427	rs2271466	T	C	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	16994372	rs114958584	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-2.752;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:127,34:0.21:161
chr10	17007847	rs61151602	T	TA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.564;QD=1.29;ReadPosRankSum=-1.178;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:44,7:0.14:51
chr10	17008171	rs1687708	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.489;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr10	17008174	rs1687707	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.682;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr10	17008183	rs1687706	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.086;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr10	17024441	rs41289309	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	17026010	rs2291523	A	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr10	17032559	rs925522	A	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	17032559	.	ACA	CCG	884	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=0;NR=16;PP=884;QD=58.5917421789;SC=GGGCAACAGCACATGGAAAAT;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=16;WE=17032569;WS=17032549;set=Platypus	GT:AD:AF:DP	1/1:2,16:0.89:18
chr10	17032561	rs925523	A	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.99;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	17083294	rs79180438	A	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	17107708	rs73600202	T	C	1835.94	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:10,74:0.88:84
chr10	17109988	rs12251381	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=0.464;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	17110474	rs4747297	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	17110590	rs111781659	G	A	1930.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.22;ReadPosRankSum=-2.347;SOR=0.657;set=HC	GT:AD:AF:DP	1/1:7,84:0.92:91
chr10	17110595	rs10795440	G	A	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	17146652	rs7068549	C	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	17146667	rs4748353	C	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	17147610	rs201983518	TCTC	T	2174.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr10	17152994	rs1801223	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.281;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr10	17156151	rs1801222	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	17164760	rs11409967	A	AC	761.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	17171656	rs76788243	T	G	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:36,175:0.83:211
chr10	17199419	rs2295810	C	G	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	17204246	rs111781208	TA	T	1564.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.036;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.328;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:16,103:0.87:119
chr10	17204248	rs200006483	A	T	1364.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.688;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=1.667;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:33,87:0.72:120
chr10	17210805	rs112782831	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.164;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr10	17210822	rs17464824	A	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	17211383	rs7084476	T	C	501.78	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr10	17216052	rs148879566	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:20,74:0.79:94
chr10	17216419	rs2273735	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr10	17243396	rs79935551	G	A	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-0.315;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:7,46:0.87:53
chr10	17243406	rs1885395	C	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.72;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	17243455	rs73606379	T	C	4674.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=1.668;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:2,177:0.99:179
chr10	17243480	rs1885394	T	A	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.12;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	17272106	rs116511811	C	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr10	17364962	rs10466289	A	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr10	17365012	rs7085734	TT	AA	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr10	17365044	rs7085750	T	G	1191.28	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:8,55:0.87:63
chr10	17365169	rs12354751	A	G	601.28	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr10	17365228	.	G	GCGCACGCACA,GCGCACGCACACA	196.82	.	AC=2,0;AF=1.00,0.00;AN=2;DP=6;set=Intersection	GT:AF:DP	1/1:1.00:6
chr10	17373617	rs2120716	G	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:26,102:0.80:128
chr10	17495709	rs45551937	G	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	17495854	rs79275008	C	A	328.94	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr10	17496164	rs140398395	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr10	17646048	.	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.014;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr10	17658996	rs11254691	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.016;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr10	17659131	rs11254692	C	A	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	17659149	rs7895850	C	G,T	3731.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=89;set=Intersection	GT:AF:DP	1/2:0.21,0.79:87
chr10	17747121	rs77935610	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr10	17756596	rs12221	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=3.116;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:192,43:0.18:235
chr10	17875857	rs56278466	T	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	17891705	rs1926736	A	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.23;QD=25.87;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	17905664	rs150608378	G	C	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr10	18112147	.	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.75;QD=25.30;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	18138386	.	G	A	420.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	18198213	rs369502118	A	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=0.566;QD=4.34;ReadPosRankSum=-0.774;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr10	18242304	rs691112	T	C	6925.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	18254599	rs7899328	C	T	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:28,156:0.85:184
chr10	18266989	rs2478568	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.198;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:146,29:0.17:175
chr10	18270422	rs1926739	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.775;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr10	18280214	rs59434947	T	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	18550450	rs951046	G	A	294.56	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr10	18550887	rs12261375	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.066;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:168,26:0.13:194
chr10	18551154	rs10764369	G	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	18787448	rs12257065	C	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	18789724	rs4485000	T	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	18795525	rs12098707	C	T	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:33,120:0.78:153
chr10	18795596	rs10741088	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr10	18828188	rs34813638	C	T	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:32,170:0.84:202
chr10	18828455	rs61733967	C	T	11843.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:112,534:0.83:646
chr10	18828663	rs4747352	G	T	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.815;QD=17.71;ReadPosRankSum=1.638;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:18,58:0.76:76
chr10	18828669	.	G	GT	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.392;QD=5.61;ReadPosRankSum=2.343;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr10	18834797	.	T	TAAAAAAAA	176	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=13;HapScore=2;MGOF=9;MMLQ=27;MQ=58.18;NF=3;NR=1;PP=176;QD=45.25;SC=ACACTTTGGTTAAAAAAAAAA;SbPval=0.86;Source=Platypus;TC=5;TCF=3;TCR=2;TR=4;WE=18834805;WS=18834787;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr10	18834948	.	CCTCT	C	5137.73	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:20,125:0.86:145
chr10	18836957	rs4747353	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	18840919	rs12767546	T	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr10	18875109	rs12772522	G	A	289.56	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	18898701	rs4748493	T	A	89.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	18898729	rs34349692	G	GT	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	18898960	rs4748494	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr10	18903281	rs11405681	C	CA	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;QD=17.26;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr10	18903605	rs4636555	A	C	94.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	18905068	rs11813862	T	C	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:14,89:0.86:103
chr10	18905336	rs11813408	A	G	164.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	18931512	rs7907153	T	C	1036.84	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,47:0.87:54
chr10	18937579	rs45468894	A	AAAG	963.90	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:2,24:0.92:26
chr10	18957647	rs10741127	T	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:7,65:0.90:72
chr10	18957699	.	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.424;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	18957766	.	T	G	52	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5103;HP=1;HapScore=2;MGOF=14;MMLQ=24;MQ=60.0;NF=2;NR=3;PP=52;QD=17.3542425094;SC=TGGAGTGATCTTGGCTCGCTG;SbPval=0.54;Source=Platypus;TC=6;TCF=2;TCR=4;TR=5;WE=18957774;WS=18957756;set=Platypus	GT:AD:AF:DP	1/0:1,5:0.83:6
chr10	18961685	rs79203254	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.87;ReadPosRankSum=0.677;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	19376734	.	GT	G	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-1.671;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr10	19413368	rs10450317	T	C	894.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=0.242;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:6,42:0.88:48
chr10	19417095	rs73591925	G	C	590.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=-0.524;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr10	19417208	rs78076387	G	A	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:26,135:0.84:161
chr10	19492566	rs7902704	A	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	19492832	rs7476259	A	C	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	19493144	rs10827051	T	C	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	19493415	rs2358348	C	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	19494316	rs144770813	TTA	T	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	19498278	rs2358355	G	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	19498722	rs2245136	A	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	19546796	rs10763903	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.277;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr10	19616735	rs1577289	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr10	19620407	rs7100382	A	C	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:39,186:0.83:225
chr10	19620439	rs7100403	A	G	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:35,163:0.82:198
chr10	19620559	rs7082205	G	A	296.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	19636869	rs1609746	G	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr10	19637088	rs1577307	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	19641035	rs10827306	T	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:31,149:0.83:180
chr10	19641231	rs7092566	A	G	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:25,163:0.87:188
chr10	19641239	rs10616221	CTG	C	6825.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	19676553	rs12773592	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.810;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:144,20:0.12:164
chr10	19676561	rs12771333	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.092;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:149,21:0.12:170
chr10	19678286	rs10763974	C	T	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	19678497	rs10763975	G	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	19678602	rs7896087	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	19739459	rs6415957	T	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	19778056	rs2151234	G	A	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.95;SOR=1.261;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	19778072	rs2184035	A	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	19884264	rs10827628	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.246;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:180,50:0.22:230
chr10	19896691	.	C	CT	1304.73	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr10	19896830	rs7909976	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.266;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:154,27:0.15:181
chr10	19904870	rs10580913	ATT	A	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=1.959;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr10	19904879	rs62881061	T	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=1.918;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr10	19981203	rs78991042	C	A	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr10	20105936	rs989767	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	20357050	rs7911756	G	T	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=0.776;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:23,60:0.72:83
chr10	20357233	rs7912036	G	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.22;ReadPosRankSum=1.898;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:14,52:0.79:66
chr10	20357241	rs185771978	A	G	1908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.01;ReadPosRankSum=-1.871;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:7,46:0.87:53
chr10	20453518	rs115281213	G	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.684;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:89,35:0.28:124
chr10	20500743	rs10827997	T	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr10	20506418	rs3817405	G	A	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	20534333	rs2778979	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	20568524	rs2681949	T	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	21104694	rs4748727	A	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	21108247	rs1006362	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	21112137	rs4748728	A	T	216.18	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr10	21120021	rs79358035	T	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:14,84:0.86:98
chr10	21120095	rs71535729	C	T	5761.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:53,261:0.83:314
chr10	21120116	rs10491056	A	G	6567.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:57,302:0.84:359
chr10	21141411	rs71524343	G	A	354.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=0.339;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr10	21141469	rs703089	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	21157492	rs2296609	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	21176945	rs703100	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	21177143	rs57918610	G	GA	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=2.042;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:20,37:0.65:57
chr10	21177156	rs67288319	GA	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.474;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr10	21185821	rs788971	A	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	21250467	rs148506474	GGCATAGTCTATGCGT	G	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=6.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.158;SOR=1.953;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr10	21359026	rs11012502	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:92,24:0.21:116
chr10	21414892	rs625223	C	G	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	21415088	rs138218835	C	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:17,124:0.88:141
chr10	21461410	rs11413698	G	GA	1217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.569;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:35,83:0.70:118
chr10	21805466	rs112207161	C	CCCTCCT	1935.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:8,81:0.91:89
chr10	21806056	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.710;QD=1.90;ReadPosRankSum=-0.525;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:96,23:0.19:119
chr10	21806321	rs7072980	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	21806832	rs946711	A	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-2.534;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:132,37:0.22:169
chr10	21845873	rs140739039	G	T	919.90	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:3,37:0.93:40
chr10	21901255	rs369797804	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.052;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr10	21903621	rs144190394	G	A	60.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	22193422	rs792455	T	C	287.22	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	22208630	rs2807978	T	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	22497710	rs2479114	C	T	167.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr10	22498209	rs2243897	A	G	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	22498259	rs16922091	C	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.390;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:132,30:0.19:162
chr10	22498468	rs838759	C	T	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:46,209:0.82:255
chr10	22498484	rs3059425	C	CAGA	10803.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	22498749	rs2478476	A	T	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr10	22605398	rs11552445	C	G	5893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=-0.201;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:54,271:0.83:325
chr10	22635359	.	G	GTTCTTCTTC	550.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.49;QD=36.72;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	22675857	rs7074847	A	G	1471.80	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:6,64:0.91:70
chr10	22701544	rs11813246	G	A	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	22826093	rs1053454	A	C	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr10	22828838	.	GA	G	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=4.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.321;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr10	22828840	.	GGGA	G	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.366;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chr10	22828841	rs150482394	GGA	G	823.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=15.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=1.629;SOR=2.805;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr10	22830719	rs943192	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.614;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:283,45:0.14:328
chr10	22830842	rs61731109	C	T	7412.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:60,319:0.84:379
chr10	22839463	rs10047326	C	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	22856946	rs2296624	C	T	493.85	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr10	22858084	.	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,54:0.82:66
chr10	22862487	rs11013052	C	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr10	22897059	rs73598582	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr10	23003226	rs1132816	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.638;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:308,53:0.15:361
chr10	23220902	rs7918553	C	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.030;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr10	23287051	rs11013230	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr10	23297252	rs10828395	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	23303092	rs72297783	A	AG	10453.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	23408139	rs2296468	A	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	23482635	rs7918487	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	23528557	rs7075896	C	A	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.944;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.78;ReadPosRankSum=1.759;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:11,73:0.87:84
chr10	23556110	rs4382803	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=2.306;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr10	23609897	rs11013386	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	23611188	rs5783834	TATTA	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	23632970	rs11013408	T	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	23633566	rs2036917	C	A	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	23682580	rs12049727	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	23717462	rs73602552	T	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.730;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr10	23729194	rs115994850	G	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:20,93:0.82:113
chr10	23729523	rs1511822	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.201;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:214,38:0.15:252
chr10	24564831	rs10764458	C	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	24721946	rs2274831	A	C	1304.79	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:6,57:0.90:63
chr10	24783384	rs3818673	T	C	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	24783393	rs3818672	C	A	9502.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	24784014	rs71506836	TAA	T	1632.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.01;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:5,63:0.93:68
chr10	24790393	rs1112284	A	G	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	24790491	rs2366916	GC	TT	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr10	24810663	rs2297330	C	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:13,69:0.84:82
chr10	24813454	rs10828663	G	A	9959.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:65,441:0.87:506
chr10	24833137	rs2250411	C	T	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:28,139:0.83:167
chr10	24834716	rs112988768	G	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr10	24878129	rs7478260	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	24879281	rs10734053	A	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	25140411	rs1326192	G	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=30.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	25140413	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.070;QD=0.39;ReadPosRankSum=-0.470;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr10	25160907	rs112511699	G	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:19,92:0.83:111
chr10	25241590	rs375693190	TGGGGAC	T	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.56;ReadPosRankSum=-1.296;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	25273311	rs5783912	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.260;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr10	25313818	rs7086282	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.582;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr10	25464527	rs78985567	C	A	5027.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:54,226:0.81:280
chr10	25755732	rs67115852	CACAT	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.932;QD=17.38;ReadPosRankSum=-1.187;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	25877849	rs76780430	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	25888180	rs10828833	A	G	1341.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.158;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=-0.400;SOR=0.384;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr10	26310410	rs3737275	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.069;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:145,28:0.16:173
chr10	26310679	rs17666079	A	C	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr10	26355862	rs3824702	G	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.352;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr10	26355872	rs3824701	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.620;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr10	26355906	rs3824700	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.745;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:116,24:0.17:140
chr10	26355992	rs3824699	A	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	26356014	rs3824698	CA	TG	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.973;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=2.535;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr10	26356037	rs3824696	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr10	26356066	rs3824695	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	26357748	rs3817420	G	A	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	26359200	rs3834403	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.738;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr10	26443646	rs3818956	G	A	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr10	26446312	rs3758449	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.682;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.533;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:166,28:0.14:194
chr10	26457585	rs75423842	A	G	234.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	26462790	rs3740232	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.634;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:96,23:0.19:119
chr10	26463043	rs3740231	A	T	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	26463130	rs1999240	C	A	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	26463587	rs3758447	C	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	26465671	rs34615182	A	G	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:31,158:0.84:189
chr10	26500992	.	G	A	495.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr10	26507030	rs8190597	A	G	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:22,92:0.81:114
chr10	26512615	rs112861572	GGT	G	495.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr10	26512638	rs368592418	ATG	A	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr10	26534809	rs1805398	G	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	26569755	rs8190748	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	26582011	rs8190786	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.671;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:70,13:0.16:83
chr10	26781157	rs74869251	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.667;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr10	26781388	rs1775246	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	26789688	rs113414620	C	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr10	26790109	rs787039	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-1.600;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr10	26790136	rs812007	T	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:41,10:0.20:51
chr10	26986729	rs17855857	G	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	27009334	rs1780196	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	27031214	rs10764638	A	G	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	27044766	rs116007967	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr10	27052872	rs149749581	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr10	27054375	rs7915128	C	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	27059608	rs1324637	C	T	339.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=1.335;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr10	27065976	rs7096584	G	A	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:27,154:0.85:181
chr10	27128595	rs35759617	A	AAT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=0.589;QD=17.86;ReadPosRankSum=-0.725;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr10	27128635	rs10829091	G	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr10	27128828	rs10829092	G	A	195.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr10	27128861	rs10829093	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	27128878	rs10829094	G	C	153.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	27326999	rs7096505	T	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	27337900	.	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.648;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr10	27368126	rs3737055	A	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	27375368	rs10443967	C	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	27375377	rs10443987	A	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	27381349	rs2297145	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	27382519	rs2297148	C	T	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	27389197	rs7897309	T	C	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	27400861	rs9833	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	27401056	rs11015538	C	T	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	27403680	rs10829187	G	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	27404927	rs2297151	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	27405096	rs2297152	A	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	27405310	rs2480718	C	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	27405360	rs35804170	G	GC	2166.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	27409555	rs10829190	G	A	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	27409632	rs11015544	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	27412669	rs2274743	A	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr10	27415906	rs10829192	C	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	27423744	rs2275752	T	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	27434483	rs2274634	G	A	1850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.186;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=-0.554;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr10	27437994	rs10764675	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	27443072	rs11816716	G	A	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	27444329	rs7907981	T	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	27444344	rs7907988	T	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	27456003	rs788238	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	27470327	rs59126044	C	CA	208.50	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	27499709	rs76818131	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	27499771	rs34613194	G	A	5903.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	27499804	rs34856168	T	C	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr10	27506773	rs59638069	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	27506854	rs1775355	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	27506961	rs34037342	G	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	27507119	rs74126939	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	27507142	rs7068463	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	27508600	rs12251316	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	27508621	rs12243607	C	T	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	27508837	rs788213	T	C	1164.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=0.750;SOR=0.547;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr10	27512014	rs16927646	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	27512440	rs12259499	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	27512448	rs59068315	TA	T	1056.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	27529549	rs2797078	C	A	14039.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr10	27529565	rs2489372	T	C	17620.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr10	27539507	rs7896532	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	27570130	rs1252880	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	27577568	rs2780686	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	27687225	rs2505323	A	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	27687775	rs1638630	T	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	27687965	rs2505327	A	G	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	27687994	rs2484173	A	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	27688109	rs2429485	T	C	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	27688188	rs368432311	AG	A	776.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=0.973;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr10	27692062	rs2429491	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	27692099	rs2484179	A	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	27692279	rs2484180	A	C	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	27692371	rs2484181	T	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	27700887	rs2429499	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	27702136	rs61737897	A	G	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,399:1.00:401
chr10	27702460	rs12098561	G	A	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	27702509	rs12098562	G	C	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	27702804	rs12098477	T	C	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	27703001	rs114320796	A	G	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	27703017	rs114966308	C	T	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	27703023	rs116622695	A	G	9734.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.27;ReadPosRankSum=2.906;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:2,223:0.99:225
chr10	27703118	rs115676272	G	C	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	27793871	rs186927886	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	28032136	rs2252651	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr10	28225897	rs2297646	G	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr10	28345336	rs61845094	C	T	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:16,89:0.85:105
chr10	28345370	rs118187581	G	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:21,124:0.86:145
chr10	28346516	rs7921181	A	C	40.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	28346584	rs12217744	G	A	397.18	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	28346629	rs76671899	A	AGT	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	28347615	rs12570424	G	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	28348815	rs1361922	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	28358548	rs2763318	CA	AC	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.94;ReadPosRankSum=-1.223;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr10	28378613	rs11006853	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.292;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:343,50:0.13:393
chr10	28378758	rs2997211	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	28409614	rs7903192	C	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.498;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:180,35:0.16:215
chr10	28436534	rs11006897	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=1.354;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:155,23:0.13:178
chr10	28822373	rs12767429	A	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	28899841	rs11371837	A	AT	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=12.41;ReadPosRankSum=0.992;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:18,61:0.77:79
chr10	28900770	rs2232792	T	G	8254.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:67,378:0.85:445
chr10	28903400	rs71391055	G	GTCTTCTTTAAAACA	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.42;ReadPosRankSum=-0.568;SOR=1.727;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	28908452	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	29136129	rs813935	A	G	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	29162295	.	G	GTA	255.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	29162334	rs111944542	C	T	192.31	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr10	29169046	rs199740171	AT	A	1016.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:8,65:0.89:73
chr10	29578084	rs17851935	A	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr10	29578180	.	A	ATGAAGCCAACTGTCTC	758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.162;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=9.840;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-2.492;QD=18.07;ReadPosRankSum=-2.916;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr10	29580735	rs2148901	C	T	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=1.756;QD=36.91;ReadPosRankSum=3.203;SOR=1.666;set=HC	GT:AD:AF:DP	0/1:4,41:0.91:45
chr10	29580743	rs2148902	G	A	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=1.558;QD=36.91;ReadPosRankSum=3.094;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:4,41:0.91:45
chr10	29581527	rs11007514	C	T	9403.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:57,423:0.88:480
chr10	29581658	rs10826593	C	T	1004.22	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,39:0.89:44
chr10	29598896	rs2796293	A	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	29747316	rs184728167	G	A	13214.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr10	29747417	rs1887465	C	T	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	29747618	rs7098527	T	A	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	29754609	rs1057952	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	29754644	rs7921306	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	29759174	rs3215848	TG	T	2714.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	29759225	rs11007607	A	G	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr10	29760209	rs2274494	C	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	29762997	rs932794	C	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.96;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	29776325	rs34472178	TAA	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	29779977	rs61848920	A	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr10	29782066	rs4749439	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	29783813	rs6481600	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	29783908	rs78773460	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-3.714;QD=0.43;ReadPosRankSum=-6.798;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:131,21:0.14:152
chr10	29783984	rs3031505	GAAACT	G	1249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.500;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=27.210;MLEAC=1;MLEAF=0.500;MQ=52.52;MQRankSum=-1.606;QD=9.54;ReadPosRankSum=-5.533;SOR=2.551;set=HC	GT:AD:AF:DP	0/1:93,38:0.29:131
chr10	29784004	rs28427082	G	A	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.21;QD=29.22;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	29784072	rs2368406	G	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	29784114	rs6481601	T	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.20;QD=20.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	29785191	rs11007625	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	29787986	rs7897960	A	G	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.40;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	29787991	rs7898306	G	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=42.67;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	29788029	rs11271548	A	ACACACACACACATGTG	13273.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=50.86;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	29797405	rs16930338	A	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-2.135;QD=18.79;ReadPosRankSum=-0.061;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:14,76:0.84:90
chr10	29801555	rs60356120	T	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	29801659	rs56817459	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	29812422	rs7070135	C	A	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr10	29812602	rs7070678	G	T	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	29813348	rs61846562	T	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	29813382	rs61846563	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	29818604	rs913035	A	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr10	29818827	rs3780843	C	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr10	29820070	rs11819202	G	A	245.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=1.274;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	29821089	rs17756919	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	29821523	rs1328323	T	C	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	29822032	rs1247696	C	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	29822159	rs7076239	T	C	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	29833998	rs2368393	A	G	7684.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.54;ReadPosRankSum=0.515;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:2,183:0.99:185
chr10	29834003	rs2368392	G	A	7167.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.71;ReadPosRankSum=1.044;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,162:0.99:164
chr10	29834095	rs4463752	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	29834105	rs1410472	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.66;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	29834114	rs1410473	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.43;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	29839864	rs1270874	A	C	8520.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:95,391:0.80:486
chr10	29844051	rs73596050	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	29932918	rs2488689	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	30306879	rs12762440	T	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr10	30317826	rs7920682	A	G	14079.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	30317838	rs7920686	A	G	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr10	30336664	rs76425998	G	C	7472.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:77,335:0.81:412
chr10	30611614	rs2484284	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	30615638	rs1029172	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=-0.000;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	30629082	rs2689215	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=0.731;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	30653561	rs7094285	C	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.262;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr10	30653738	rs115821166	G	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.792;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:79,14:0.15:93
chr10	30654190	.	A	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DP=606;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-2.256;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:490,93:0.16:583
chr10	30728250	rs2907	A	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.464;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:284,64:0.18:348
chr10	30749705	rs8177034	C	T	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.677;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:171,59:0.26:230
chr10	30749895	rs3034	G	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	30901722	rs3832672	GC	G	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr10	30915306	rs145120759	C	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.515;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:94,16:0.15:110
chr10	30915618	rs3852488	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr10	30915637	rs3864847	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr10	30915906	rs41288999	A	G	884.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-0.102;QD=19.67;ReadPosRankSum=1.928;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:6,39:0.87:45
chr10	30918486	rs75095145	G	A	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-5.284;QD=8.69;ReadPosRankSum=-0.727;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:141,51:0.27:192
chr10	30918492	rs76101300	G	T	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-4.701;QD=8.16;ReadPosRankSum=1.157;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:151,51:0.25:202
chr10	30918549	rs201069868	G	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:119,38:0.24:157
chr10	30918597	rs74551644	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.308;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-1.120;QD=1.24;ReadPosRankSum=-3.818;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr10	30974174	rs4749580	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=53.61;MQRankSum=-1.426;QD=1.09;ReadPosRankSum=-0.647;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:119,22:0.16:141
chr10	30978164	rs28363791	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr10	30978265	rs112982956	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.26;MQRankSum=1.064;QD=0.86;ReadPosRankSum=-0.843;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:150,28:0.16:178
chr10	30978288	rs71023602	C	CAGTTT	2254.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:115,61:0.35:176
chr10	30982453	rs7068641	T	C	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.25;QD=29.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	30982475	rs7084628	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;QD=25.82;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	30982648	.	C	T	1520.98	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:8,65:0.89:73
chr10	30986242	rs11008188	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	30986244	rs11007616	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=46.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	30986253	rs4747726	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.88;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	30986342	rs61737921	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	30987397	rs149196658	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.821;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.111;QD=0.43;ReadPosRankSum=1.314;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:215,32:0.13:247
chr10	30989188	rs10740829	G	C	9683.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	30993393	rs112090325	G	A	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr10	30993436	rs79612491	T	C	18041.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr10	30993448	rs10826848	G	A	17254.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr10	30998371	rs12258064	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.721;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr10	31134557	rs17229657	T	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	31138577	rs34186436	C	T	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.839;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:34,94:0.73:128
chr10	31138817	rs10160116	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.118;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:174,39:0.18:213
chr10	31146643	rs4237394	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.809;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:148,31:0.17:179
chr10	31146667	rs77630866	G	A	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:35,145:0.81:180
chr10	31803516	rs220060	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr10	32096803	rs1412493	G	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.40;ReadPosRankSum=0.524;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr10	32103077	rs2799012	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	32115133	rs2255544	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	32120678	rs2808100	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.062;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr10	32307534	rs11428920	T	TA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.71;QD=42.52;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	32307536	rs55938482	T	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.73;QD=43.12;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	32307536	.	TA	AA	399	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=1.0000,1.0000;HP=2;HapScore=3;MGOF=15;MMLQ=27;MQ=69.18;NF=2,0;NR=9,9;PP=231,399;QD=24.1610193225;SC=TTATTCTGTATATTGTACTTA;SbPval=0.61;Source=Platypus;TC=11;TCF=2;TCR=9;TR=11,9;WE=32307544;WS=32307526;set=Platypus	GT:AD:AF:DP	0/1:0,11:1.00:11
chr10	32307536	.	TA	TAA	399	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=1.0000,1.0000;HP=2;HapScore=3;MGOF=15;MMLQ=27;MQ=69.18;NF=2,0;NR=9,9;PP=231,399;QD=24.1610193225;SC=TTATTCTGTATATTGTACTTA;SbPval=0.61;Source=Platypus;TC=11;TCF=2;TCR=9;TR=11,9;WE=32307544;WS=32307526;set=Platypus	GT:AD:AF:DP	0/1:0,9:1.00:9
chr10	32309005	rs1775715	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	32311969	rs176924	A	G	3999.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.826;SOR=1.231;set=HC	GT:AD:AF:DP	1/1:2,154:0.99:156
chr10	32327037	rs373407112	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.566;QD=3.48;ReadPosRankSum=0.015;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr10	32344726	rs114225035	C	A	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:27,125:0.82:152
chr10	32573591	rs11816392	T	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-3.023;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:119,22:0.16:141
chr10	32573963	rs73245648	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-1.105;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr10	32575793	rs2986931	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.971;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:105,20:0.16:125
chr10	32580069	rs74918223	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr10	32582661	rs60610378	A	G	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:28,85:0.75:113
chr10	32594653	rs73245687	A	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr10	32740905	rs7094838	G	A	1587.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.89;ReadPosRankSum=1.555;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:7,69:0.91:76
chr10	32742256	rs2490505	T	G	198.98	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	32745262	rs7897978	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:6,60:0.91:66
chr10	32745396	rs2244153	A	G	188.88	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	32751901	rs2505380	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:9,51:0.85:60
chr10	32759918	rs2460710	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	32806972	rs2990984	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr10	32832214	rs2990986	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-1.562;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr10	32833081	rs113244447	AT	A	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	32833354	rs45553939	C	G	396.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	32854667	rs1980248	G	A	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	32912897	rs7914733	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,14:0.21:68
chr10	32974969	rs1762526	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,62:0.83:75
chr10	33015782	rs928701	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	33015855	rs4145863	G	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	33018351	rs1414548	G	C	418.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=-1.030;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr10	33123824	rs4448627	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	33143318	rs5784306	AT	A	514.74	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr10	33143396	rs1418538	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	33165226	rs2488305	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	33209266	rs2230396	G	T	3223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=0.912;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:51,155:0.75:206
chr10	33215061	rs58265388	A	T	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:18,87:0.83:105
chr10	33217064	rs148743888	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.233;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:140,23:0.14:163
chr10	33217110	rs2230394	G	A	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.198;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:206,40:0.16:246
chr10	33469181	rs1048804	A	G	10799.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr10	33471761	.	GCACA	G,GCGCACACACACACACA	1611	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=24;MQ=58.33;NF=0,1;NR=5,5;PP=58,1611;QD=12.2;SC=TTAGGTACATGCACACACACA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5,6;WE=33471772;WS=33471751;set=Platypus	GT:AF:DP	0/1:0.83:6
chr10	33481478	rs2243920	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	33483561	rs2474726	T	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.357;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr10	33483837	rs149169549	CAT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.160;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr10	33484577	rs2474724	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	33495306	rs2474715	A	G	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	33496676	rs368815672	GA	G	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr10	33496681	rs74656391	A	AAG	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.625;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr10	33502240	rs2070303	C	T	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:31,156:0.83:187
chr10	33510614	rs4934837	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.875;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chr10	33510663	rs2229935	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-1.008;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:185,30:0.14:215
chr10	33510768	rs2229934	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.531;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:198,29:0.13:227
chr10	33542835	rs7074620	T	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	33552407	rs2070299	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	33552518	rs2070298	A	C	3638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.13;ReadPosRankSum=0.441;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:11,87:0.89:98
chr10	33552522	rs2070297	G	A	3762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.21;ReadPosRankSum=-0.672;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,97:0.88:110
chr10	33552696	rs7079053	A	G	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	33619562	rs1411924	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	34408745	rs3004928	A	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr10	34619946	rs10740885	A	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	34620220	rs3781128	C	T	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	34626113	rs10508802	A	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	34663981	.	AACACACACAC	AAC,A	565.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=32;set=Intersection	GT:AF:DP	1/1:0.88:17
chr10	34666864	rs10740890	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	34667104	rs77109087	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.194;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr10	34688287	rs2796011	G	A	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	34985197	rs5784425	C	CA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-1.348;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:126,29:0.19:155
chr10	35103684	rs113044591	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	35302547	rs12242284	C	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.07;ReadPosRankSum=-0.883;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr10	35302556	rs12250115	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.67;ReadPosRankSum=-1.281;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:8,41:0.84:49
chr10	35320383	rs3740083	C	T	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	35322024	rs12261654	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	35324076	rs2244174	A	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	35328088	rs11010077	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	35338673	rs7897024	C	T	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:40,220:0.85:260
chr10	35338699	rs7900480	G	A	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	35343525	rs2384289	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	35360310	rs4934711	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	35362977	rs12248333	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	35426755	rs17499247	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	35464373	rs200497568	C	CA	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr10	35464778	rs1531550	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.220;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:179,27:0.13:206
chr10	35467671	rs12260130	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	35468107	rs11010115	G	A	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:24,105:0.81:129
chr10	35484949	rs1057108	T	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	35625845	rs59114674	C	G	588.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	35625846	.	G	GC	579.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	35626196	rs200238658	CG	C	1148.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	35772402	rs3802509	G	A	2229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.274;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=1.395;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,88:0.99:89
chr10	35805569	.	T	TTTCC	275.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	35894666	rs627267	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	35928224	rs625858	C	G	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	35929350	rs73270587	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	35930412	rs142623421	C	CG	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.31;ReadPosRankSum=2.731;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	36813198	rs2503082	A	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	37508450	rs1148259	A	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr10	38245843	rs9299755	C	CA	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-1.123;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr10	38246545	rs2799499	A	G	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	38260558	rs200231946	AACACACACAC	A,AAC	2942.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.320;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=0.000;QD=38.22;SOR=1.188;set=HC	GT:AD:AF:DP	1/2:2,20,55:0.26,0.71:77
chr10	38260622	rs140920386	AG	A	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:153,21:0.12:174
chr10	38299843	rs2293962	G	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr10	38306128	rs2738208	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	38344700	rs2505232	C	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-5.118;QD=0.64;ReadPosRankSum=-1.793;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:321,54:0.14:375
chr10	38660062	.	C	T	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=51.60;MQRankSum=1.153;QD=17.57;ReadPosRankSum=0.038;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:19,75:0.80:94
chr10	38740253	.	G	A	199.98	.	AC=1;AF=0.500;AN=2;DP=12;MQ=59.12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	42379778	rs200478260	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.78;QD=43.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	42379782	rs62642391	C	T	383.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.78;MQRankSum=-1.989;QD=22.58;ReadPosRankSum=-0.680;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr10	42379801	rs111137627	C	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.76;QD=45.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	42379820	rs369870496	CTTCAA	C	256.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-0.792;QD=36.69;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	42379848	rs201088015	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=2.200;QD=28.86;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	42379855	.	A	T	309.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.60;MQRankSum=-1.147;QD=28.09;ReadPosRankSum=-0.477;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr10	42379874	.	CATTCT	C	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.48;MQRankSum=-1.548;QD=31.75;ReadPosRankSum=1.487;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr10	42379889	.	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.19;MQRankSum=0.745;QD=10.35;ReadPosRankSum=4.173;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr10	42379900	.	ATTCCC	A	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=48.10;MQRankSum=1.249;QD=8.86;ReadPosRankSum=2.959;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	42379938	.	C	CCATTA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=48.32;MQRankSum=-1.256;QD=2.37;ReadPosRankSum=0.714;SOR=2.821;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr10	42379941	.	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=48.07;MQRankSum=-0.046;QD=1.64;ReadPosRankSum=2.078;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr10	42379944	.	CGCTCCATTCGGTTTG	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.69;MQRankSum=0.158;QD=2.27;ReadPosRankSum=1.419;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr10	42379983	rs150223476	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	42379988	rs371285681	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	42380038	rs9731223	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.83;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	42905431	rs3004228	A	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	42905510	rs2419684	A	C	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	42920885	.	G	A	589.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr10	42920958	rs112561849	T	C	131.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr10	42922595	rs2489725	A	G	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	42928759	rs75794730	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-8.907;QD=0.27;ReadPosRankSum=-3.495;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:125,15:0.11:140
chr10	42928764	rs113163067	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.092;QD=0.27;ReadPosRankSum=-2.325;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:125,15:0.11:140
chr10	42928842	rs4570532	A	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-5.251;QD=5.19;ReadPosRankSum=0.908;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr10	42928845	.	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-5.083;QD=5.69;ReadPosRankSum=0.617;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr10	42928851	.	CA	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-4.726;QD=6.27;ReadPosRankSum=-0.204;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	42928858	rs371544593	T	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-4.919;QD=6.30;ReadPosRankSum=-0.091;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr10	42928869	.	ATTTT	A	76.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-4.493;QD=3.49;ReadPosRankSum=0.724;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr10	42928874	.	T	TGA	79.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-4.139;QD=4.20;ReadPosRankSum=0.551;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr10	42928879	.	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-3.750;QD=6.11;ReadPosRankSum=0.945;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr10	42928885	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-3.466;QD=4.63;ReadPosRankSum=0.626;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr10	42947152	.	A	G	277	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=6;HapScore=4;MGOF=27;MMLQ=16;MQ=56.92;NF=3;NR=4;PP=277;QD=44.5387446496;SC=AGAGAAGAAAAAAAGATGTGA;SbPval=0.54;Source=Platypus;TC=26;TCF=10;TCR=16;TR=7;WE=42947160;WS=42947075;set=Platypus	GT:AD:AF:DP	1/0:19,7:0.27:26
chr10	42965636	rs1255411	C	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	42965816	rs112452825	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	43089156	rs7904627	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-12.097;QD=0.24;ReadPosRankSum=0.787;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:268,39:0.13:307
chr10	43089965	rs210280	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.330;QD=2.98;ReadPosRankSum=-0.567;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr10	43089988	rs74137906	T	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.485;QD=2.30;ReadPosRankSum=0.922;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr10	43090038	rs74137907	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.539;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr10	43127264	.	G	A	549.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr10	43128395	rs209391	C	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	43132232	rs209387	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	43232450	rs702370	G	A	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	43280057	rs55869085	CTT	C	6956.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=34.27;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	43326444	rs369377766	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:23,101:0.81:124
chr10	43572883	rs111514357	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr10	43572950	rs12246855	A	G	691.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	43572950	.	AA	GC	106	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=2;MGOF=31;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=106;QD=39.8669687156;SC=GCGGCGGGCGAAGGGCAGGAC;SbPval=0.86;Source=Platypus;TC=5;TCF=2;TCR=3;TR=4;WE=43572959;WS=43572940;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr10	43572951	rs12246856	A	C	691.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	43595781	rs2565206	G	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	43595968	rs1800858	A	G	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	43604390	rs1864404	A	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	43604534	rs113931414	G	A	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:43,215:0.83:258
chr10	43606687	rs1800860	A	G	10773.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:5,429:0.99:434
chr10	43607756	rs3026750	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	43607759	rs34827976	GC	G	1604.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	43613843	rs1800861	G	T	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr10	43615412	rs150916310	G	T	346.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.41;ReadPosRankSum=0.740;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr10	43620551	rs2742236	G	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	43622217	rs2075912	T	C	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	43650749	rs375066016	A	T	5864.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:63,259:0.80:322
chr10	43657811	rs2257767	T	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	43659536	rs2503865	C	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	43671378	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.529;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr10	43695049	rs1254964	T	C	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	43698758	.	G	A	2203.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:23,99:0.81:122
chr10	43698980	rs1254961	C	G	493.79	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr10	43869097	rs10899795	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-1.642;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr10	43883342	rs1126487	T	A	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	43932479	rs2244396	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	43976983	rs12359980	T	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:16,94:0.85:110
chr10	43977975	rs59265213	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.352;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:171,29:0.14:200
chr10	43991255	rs9422519	C	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	44052903	rs2230661	A	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:32,131:0.80:163
chr10	44053013	rs2230660	G	C	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:41,208:0.84:249
chr10	44053585	rs2999278	C	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:20,62:0.76:82
chr10	44102290	rs17154006	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	44103923	rs3128239	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	44104513	rs7342073	C	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	44111806	rs10899839	G	A	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	44112214	rs7478426	C	T	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:29,110:0.79:139
chr10	44285159	rs1998748	T	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.594;QD=0.83;ReadPosRankSum=0.526;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:539,94:0.15:633
chr10	44285190	rs1998749	G	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.593;QD=0.74;ReadPosRankSum=0.636;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:536,93:0.15:629
chr10	44868856	rs266091	A	C	12710.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.23;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr10	44868864	rs266090	C	T	5032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=0.602;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:59,229:0.80:288
chr10	44870015	rs266088	C	T	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:32,143:0.82:175
chr10	44870240	rs197452	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr10	44874042	rs17881685	C	T	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:40,150:0.79:190
chr10	44874253	rs266085	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr10	44880358	rs201325587	A	AGCCTCGCCAGGGCC	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.815;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:74,10:0.12:84
chr10	45423282	rs10900131	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	45430462	rs17417442	C	T	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:38,167:0.81:205
chr10	45467146	rs146605955	G	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.397;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:164,34:0.17:198
chr10	45484990	rs58731194	T	G	421.28	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr10	45496120	rs12269028	A	T	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:38,158:0.81:196
chr10	45799592	rs11239431	A	G	3036.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:25,138:0.85:163
chr10	45869669	rs78137087	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.373;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:60,8:0.12:68
chr10	45869700	rs72561472	G	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=1.217;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:109,9:0.08:118
chr10	45869713	rs4987106	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.466;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:127,14:0.10:141
chr10	45869748	rs4987105	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.212;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:201,29:0.13:230
chr10	45869895	rs111916157	A	G	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-2.097;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:95,22:0.19:117
chr10	45869903	rs111528152	A	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.197;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr10	45877899	rs28395865	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.722;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:223,51:0.19:274
chr10	45878050	rs2228064	G	A	9154.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:79,411:0.84:490
chr10	45891189	rs11239509	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	45919722	rs28395866	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	45924023	rs1565096	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	45924256	rs1565097	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	45935744	rs3780914	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	45938746	rs1051713	C	T	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:15,88:0.85:103
chr10	45939136	rs7900977	T	C	7307.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	45953767	rs7908745	A	G	3147.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:20,140:0.88:160
chr10	45958856	rs2291428	G	C	6823.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:59,297:0.83:356
chr10	45958881	rs2291429	A	C	6048.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:41,257:0.86:298
chr10	46112031	rs75205426	A	G	4551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-1.887;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:50,208:0.81:258
chr10	46120241	rs112110885	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	46147377	rs112089881	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr10	46148266	rs17157944	A	G	297.03	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr10	46148301	rs17157945	T	A	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr10	46963738	rs3127783	A	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:5,88:0.95:93
chr10	46964884	rs28468379	G	A	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr10	46965018	rs3127785	C	G	5575.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:290,289:0.50:579
chr10	46965151	rs28647404	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:101,72:0.42:173
chr10	46965727	rs1889849	G	A	7960.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:37,345:0.90:382
chr10	46967418	rs28728055	G	A	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:272,162:0.37:434
chr10	46967672	rs2152530	C	T	13539.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:49,562:0.92:611
chr10	46968762	rs3127790	C	G	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:20,203:0.91:223
chr10	46968879	rs10588658	AAC	A	879.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.598;QD=25.85;ReadPosRankSum=0.298;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr10	46968884	.	ACACACACACACACG	A	169	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=3;MGOF=37;MMLQ=22;MQ=57.79;NF=1;NR=14;PP=169;QD=11.8;SC=CAGGCAACACACACACACACA;SbPval=0.51;Source=Platypus;TC=21;TCF=1;TCR=20;TR=15;WE=46968905;WS=46968869;set=Platypus	GT:AD:AF:DP	1/0:6,15:0.71:21
chr10	46969496	rs3127792	A	G	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:46,385:0.89:431
chr10	46970654	rs915449	C	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	46970792	rs915450	G	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	46998719	rs201733825	GTCAC	G	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr10	46998795	rs3127677	A	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr10	46998894	rs3127817	G	A	5192.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:277,265:0.49:542
chr10	46998995	rs4926045	C	G	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:317,225:0.42:542
chr10	46998999	rs3127818	G	A	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:275,273:0.50:548
chr10	46999019	rs3127819	G	A	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:289,265:0.48:554
chr10	46999030	rs4925989	C	T	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:333,228:0.41:561
chr10	46999151	rs3127820	T	C	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:131,154:0.54:285
chr10	46999178	rs7090312	A	C	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:171,112:0.40:283
chr10	46999189	rs3127678	C	T	5673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.94;ReadPosRankSum=1.520;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:124,147:0.54:271
chr10	46999190	rs3127679	A	G	9290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.201;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.91;ReadPosRankSum=-1.723;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:15,259:0.95:274
chr10	46999198	rs3127680	G	T	5709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=0.099;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:128,151:0.54:279
chr10	46999465	rs3127682	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:146,141:0.49:287
chr10	46999484	rs11204658	G	T	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:180,128:0.42:308
chr10	46999577	rs11204659	G	T	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:303,195:0.39:498
chr10	46999591	rs112620425	C	CATGAGGGAG	8021.73	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:241,210:0.47:451
chr10	46999596	rs7895979	G	A	7115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=-6.062;QD=14.67;ReadPosRankSum=-0.014;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:288,197:0.41:485
chr10	46999604	rs3127683	A	G	14170.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:51,401:0.89:452
chr10	46999642	rs74131324	G	A	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:292,185:0.39:477
chr10	46999732	rs4579877	G	A	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:261,210:0.45:471
chr10	46999747	rs3127821	T	C	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:249,204:0.45:453
chr10	46999922	rs4926046	G	T	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:121,87:0.42:208
chr10	47000004	rs3127822	T	C	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:33,269:0.89:302
chr10	47000071	rs4244614	G	A	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:282,177:0.39:459
chr10	47000079	rs3127823	T	C	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:217,236:0.52:453
chr10	47000146	rs3127684	C	T	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:21,265:0.93:286
chr10	47000188	rs3127824	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:12,116:0.91:128
chr10	47000239	rs7912299	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr10	47086915	rs59974223	C	T	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:395,253:0.39:648
chr10	47087474	rs1129838	C	T	13450.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:53,557:0.91:610
chr10	47087501	rs3824733	C	T	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:359,217:0.38:576
chr10	47087608	rs1936339	T	C	11424.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:61,504:0.89:565
chr10	47087680	rs1048157	C	T	14035.74	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:82,605:0.88:687
chr10	47087731	rs1048158	C	T	16061.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:87,692:0.89:779
chr10	47087830	rs1129839	G	A	14045.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:46,581:0.93:627
chr10	47673858	rs7092598	T	C	2225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.35;ReadPosRankSum=0.132;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:14,101:0.88:115
chr10	47679810	rs115891944	A	G	4281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=0.253;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:40,197:0.83:237
chr10	47680513	rs10572939	GCC	G	1234.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	47682811	rs2999446	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.062;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:250,60:0.19:310
chr10	47682909	rs77974251	G	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:29,96:0.77:125
chr10	47701302	rs7091749	G	C	11976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.114;QD=16.73;ReadPosRankSum=0.318;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:142,574:0.80:716
chr10	47915862	rs201971206	C	T	2801.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.897;MLEAC=2;MLEAF=1.000;MQ=37.11;MQRankSum=-5.005;QD=19.32;ReadPosRankSum=1.672;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:13,132:0.91:145
chr10	47915891	rs192916706	C	A	2294.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.192;MLEAC=2;MLEAF=1.000;MQ=34.86;MQRankSum=-7.360;QD=18.66;ReadPosRankSum=-0.955;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:13,110:0.89:123
chr10	48371564	rs76541972	C	T	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:33,162:0.83:195
chr10	48428841	rs35390845	T	C	9218.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:99,418:0.81:517
chr10	48438338	rs114552709	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:17,81:0.83:98
chr10	49392575	rs931743	C	G	1431.22	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:7,61:0.90:68
chr10	49393002	rs2062704	C	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=0.611;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr10	49414953	rs74133708	G	A	2735.31	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:16,125:0.89:141
chr10	49450443	rs280612	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	49609578	rs3730154	C	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	49633873	.	T	TAC,TACAAGAATACATTCTTGTAA	232.80	.	AC=2,0;AF=1.00,0.00;AN=2;DP=6;set=Intersection	GT:AF:DP	1/1:1.00:5
chr10	49633875	.	T	A	286.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	49633876	.	GACT	G	109	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=1;HapScore=4;MGOF=71;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=109;QD=67.5;SC=ATATGAATATGACTAATGTAT;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=2;WE=49633886;WS=49633863;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr10	49633877	.	A	AATACATT	322.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	49633879	.	T	TTGTAAATG	385.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	49634603	rs374873177	CAGTT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.366;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr10	49654342	rs1051508	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	49654403	rs1051507	C	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	49658248	rs1867585	G	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	49659559	rs10776601	C	T	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	49659637	rs3827681	T	C	7271.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	49661341	rs7092959	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	49662884	rs11101327	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	49667713	rs1867575	G	A	11913.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr10	49667795	rs3853761	T	C	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr10	49687594	rs4838601	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.346;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr10	49687964	rs4240513	A	C	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.133;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:234,45:0.16:279
chr10	49687971	rs4240514	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.285;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:231,42:0.15:273
chr10	49688014	rs4838602	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=4.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.951;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:215,33:0.13:248
chr10	49690351	rs1445157	T	C	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	49701652	rs10735226	G	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr10	49790972	rs2289808	C	T	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	49812917	rs17010948	T	C	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	49860447	rs145959357	G	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr10	49918021	rs78218203	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:31,115:0.79:146
chr10	49929331	rs11818741	G	A	2937.80	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:17,132:0.89:149
chr10	49939139	rs1993986	T	A	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	49944249	rs4838645	C	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	49983890	rs1871604	G	T	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	49994655	rs7897559	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr10	49998059	rs114896581	A	C	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	50004492	rs61747060	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,53:0.78:68
chr10	50004540	rs116666378	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	50013402	rs2170132	T	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr10	50022040	rs41283275	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.458;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:127,26:0.17:153
chr10	50025446	rs12268007	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=-0.268;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:357,51:0.12:408
chr10	50031145	rs11101515	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-1.296;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:131,23:0.15:154
chr10	50031212	rs113439641	CT	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.024;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:109,49:0.31:158
chr10	50034833	rs6537579	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.028;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:238,43:0.15:281
chr10	50034986	rs78512600	TGGTGGTCCATG	T	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.662;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:87,11:0.11:98
chr10	50040562	rs3747873	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.397;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:210,37:0.15:247
chr10	50040610	rs3747872	T	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.665;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:368,56:0.13:424
chr10	50075216	.	A	AAAAATAAAATAAAATAAAATAAAATAAAAT	184.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.57;QD=92.45;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	50075461	rs2663019	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	50083111	rs2620881	T	C	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=0.957;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:27,115:0.81:142
chr10	50085267	rs1904595	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	50108145	rs2671693	G	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	50109902	rs2663046	G	A	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	50110015	rs7068839	A	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	50121784	rs10776653	T	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:24,197:0.89:221
chr10	50122181	rs7094610	C	A	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:21,74:0.78:95
chr10	50122227	rs60495132	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-1.757;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr10	50149674	rs2671717	A	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	50154768	rs2663066	A	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	50165411	rs3750867	T	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr10	50182822	rs73298969	A	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr10	50183042	rs61733240	G	A	15226.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr10	50183177	rs114759759	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.938;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:109,25:0.19:134
chr10	50186317	rs2292585	G	A	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	50190799	rs1054553	C	T	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:27,145:0.84:172
chr10	50190882	.	C	T	173.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:66,17:0.20:83
chr10	50190923	rs61366126	G	GA	318	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=2.277;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr10	50227785	rs1913525	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	50227870	rs1913524	C	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	50227927	rs1913523	C	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	50315893	rs13088	A	G	8836.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:72,399:0.85:471
chr10	50369860	rs59598256	C	T	256.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr10	50373102	rs76725731	C	T	412.84	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr10	50373953	rs74322768	G	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:23,74:0.76:97
chr10	50374819	rs9418839	T	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.451;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:144,29:0.17:173
chr10	50376106	rs2466756	A	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=1.054;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:102,16:0.14:118
chr10	50531604	rs7093235	T	C	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	50531955	rs138877908	C	T	15225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=-0.171;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:152,683:0.82:835
chr10	50532204	rs143544986	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:37,155:0.81:192
chr10	50532683	rs7921186	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	50533617	rs2377940	T	C	11726.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr10	50534969	.	A	AACACACACAC	2099.73	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;QD=44.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	50535024	rs200006285	T	G	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr10	50667057	.	A	T	1817.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:20,75:0.79:95
chr10	50668442	rs115633798	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:9,91:0.91:100
chr10	50684228	rs3750749	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=2.184;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:170,25:0.13:195
chr10	50691360	rs4253162	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.736;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr10	50701156	rs4253132	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.583;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr10	50723684	rs4253073	G	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.909;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:242,60:0.20:302
chr10	50724016	rs4253072	C	T	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	50732280	rs2228528	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.651;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:330,62:0.16:392
chr10	50736328	rs4253040	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.214;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr10	50740600	rs4253013	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.362;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:182,37:0.17:219
chr10	50818762	rs1880675	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	50820345	rs8187730	C	A	11193.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr10	50822226	rs7923716	T	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	50827999	rs138137810	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.398;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:101,21:0.17:122
chr10	50828506	rs1880677	G	A	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	50833662	rs868749	C	T	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:48,177:0.79:225
chr10	50835876	rs58788269	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr10	50856652	rs4838544	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:118,29:0.20:147
chr10	50856772	.	T	TAC	123.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.47;ReadPosRankSum=0.619;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	50863147	rs8178992	T	C	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-1.248;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:308,81:0.21:389
chr10	50863565	rs7076926	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.310;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr10	50887651	rs1153781	G	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=8.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.590;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr10	50901809	rs1153797	T	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.804;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr10	50902469	rs2278561	T	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,14:0.21:67
chr10	50902684	rs1055421	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=2.095;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr10	50916484	rs1258236	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.211;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:127,23:0.15:150
chr10	50916542	rs4838554	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.127;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:171,36:0.17:207
chr10	50947918	rs1258259	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.143;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr10	50948987	rs3750757	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.073;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr10	50954727	rs114355276	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.435;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:124,30:0.19:154
chr10	50954850	rs75974530	G	A	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.467;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:439,89:0.17:528
chr10	50960354	rs2304636	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr10	50960581	rs2304637	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:57,14:0.20:71
chr10	51027585	rs74418277	T	C	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:25,123:0.83:148
chr10	51370866	.	C	T	201.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-0.567;QD=18.30;ReadPosRankSum=0.519;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr10	51540291	rs11006274	T	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:17,73:0.81:90
chr10	51549496	rs10993994	T	C	3736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.05;ReadPosRankSum=1.401;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:33,174:0.84:207
chr10	51549545	rs4935176	G	T	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	51556921	rs10994385	G	C	548.56	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr10	51568378	rs10761581	T	G	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:34,167:0.83:201
chr10	51573285	rs79932828	A	G	222.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.00;QD=22.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	51620317	rs200147310	A	G	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.66;QD=25.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	51620499	rs78584401	G	A	442.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=2;MLEAF=1.000;MQ=46.46;MQRankSum=-1.700;QD=22.10;ReadPosRankSum=-0.595;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	51623004	rs201547968	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr10	51623024	rs146205287	A	C	1068.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr10	51623052	rs143647852	C	CT	4248.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:91,106:0.54:197
chr10	51623061	rs115719811	G	A	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:110,131:0.54:241
chr10	51623147	rs373071373	C	T	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-3.979;QD=9.62;ReadPosRankSum=-0.951;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:77,76:0.50:153
chr10	51623174	rs141118546	C	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-3.480;QD=8.60;ReadPosRankSum=1.009;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:43,37:0.46:80
chr10	51623188	rs149000982	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-0.094;QD=9.20;ReadPosRankSum=0.146;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	51623190	rs137912947	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-0.907;QD=9.02;ReadPosRankSum=0.272;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	51623866	rs374725846	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.50;QD=24.60;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	51631812	rs200391397	A	G	3154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-6.639;QD=9.77;ReadPosRankSum=-1.554;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:164,159:0.49:323
chr10	51632906	rs146420399	G	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.11;MQRankSum=-8.060;QD=7.72;ReadPosRankSum=-1.196;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:69,45:0.39:114
chr10	51632971	rs200644678	A	G	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:246,202:0.45:448
chr10	51633027	rs115081809	T	C	4494.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:304,250:0.45:554
chr10	51827726	rs114923840	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	51859758	rs200416566	A	G	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.21;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	51970687	rs370757287	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.97;MQRankSum=-1.154;QD=1.31;ReadPosRankSum=-0.859;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr10	51978490	rs201395210	A	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr10	52002852	rs1436217	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	52002980	rs3739979	T	G	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr10	52004877	rs7096899	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	52005153	rs7097319	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	52005191	rs7067625	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr10	52005271	rs7067773	T	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	52005293	rs7077415	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	52005303	rs7097483	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	52005350	rs7090968	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	52005353	rs7077551	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	52086939	rs2246994	C	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	52384727	rs116350716	T	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.211;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:134,25:0.16:159
chr10	52576068	rs4245008	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.722;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr10	52588120	.	T	C	1244.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr10	52603659	rs10821877	C	T	55.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.95;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	52610352	rs71457593	T	TTG	2229.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr10	52751070	rs79957958	A	AGCC	1266.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr10	53059201	rs10762013	G	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-1.302;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr10	53059209	rs10762014	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.989;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr10	53059406	rs2043556	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=1.098;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chr10	53458998	rs2292828	A	G	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	53667136	rs78869987	AT	A	115.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	53667443	rs10823860	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	53667476	rs7081919	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	53841337	rs1904024	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.364;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr10	53841639	rs5784902	AG	A	30.71	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	54040717	rs7912782	G	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=1.086;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:152,22:0.13:174
chr10	54049835	rs41281544	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	54076271	rs1569198	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.382;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:178,27:0.13:205
chr10	54528266	rs930507	G	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr10	54528298	rs930508	G	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr10	54528353	rs930509	C	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	54530694	rs1982267	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	54531226	rs1800451	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	54531461	rs7095891	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	54531534	rs11003123	G	A	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	55568330	.	A	ATAAG	619.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr10	55581882	rs113363047	CGTT	C	5219.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:58,235:0.80:293
chr10	55581936	rs112097891	G	T	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:56,253:0.82:309
chr10	55582205	.	CAGGAGGAGGAGA	C	1499.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:3,38:0.93:41
chr10	55584774	.	CAGTA	C	1627.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	55588137	rs4570494	G	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	55590942	rs66893390	TAGAC	T	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.115;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:180,27:0.13:207
chr10	55590950	rs77597438	C	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.239;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:179,27:0.13:206
chr10	55599978	.	T	C	277.56	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr10	55626630	rs5785023	G	GA	1132.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.728;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.385;QD=18.27;ReadPosRankSum=-2.171;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:6,56:0.90:62
chr10	55663198	rs10740559	A	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	55663202	rs2593124	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	55719652	rs2593107	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	55755491	rs2135720	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=2.147;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:171,46:0.21:217
chr10	55838950	rs1911433	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	55892600	rs201069783	T	TAC	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=2.240;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr10	55943184	rs7093302	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	55949264	rs5785045	AT	A	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	55955485	rs7921598	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	55955610	rs10825269	C	T	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	55973889	rs10763086	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	55996761	rs721825	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	56076975	rs10763098	A	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr10	56077209	rs10740579	G	A	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	56089166	rs11004239	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	56089223	rs11004240	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	56089263	rs857395	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	56129066	rs11594958	A	G	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,52:0.84:62
chr10	56287689	rs10825347	A	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	56335031	rs7070334	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56335067	.	A	G	25	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=0.9998;HP=10;HapScore=2;MGOF=28;MMLQ=28;MQ=60.0;NF=2;NR=1;PP=25;QD=19.9237375157;SC=TAATAAAAAAAAAAACTGAAA;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=56335075;WS=56335057;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56335099	rs10825362	C	T	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	56345303	rs4570492	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;QD=24.96;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	56345335	rs2026413	T	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=25.03;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	56345378	rs11396767	T	TG	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:5,65:0.93:70
chr10	56345425	rs2026412	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	56345491	rs2026411	C	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	56345511	rs2026410	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=43.72;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	58119976	rs3861049	G	A	9932.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	59064371	rs1275284	C	G	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	59956556	rs2790149	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	59958956	rs1769044	C	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	59975743	rs2790146	A	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	59987071	rs11398218	G	GT	140.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	59997644	rs2790217	A	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	60027122	rs1339580	C	T	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	60029163	rs1416763	C	T	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	60036815	rs2254775	A	G	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	60047177	rs3758567	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr10	60095105	rs112660736	G	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr10	60095143	rs1905456	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	60123486	rs73288305	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr10	60145202	rs45486593	C	T	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:29,81:0.74:110
chr10	60148692	rs2306604	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	60154285	rs45510995	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr10	60160134	.	TAA	T	233.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.48;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	60160305	rs66599038	G	GT	398.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.281;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.701;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:5,27:0.84:32
chr10	60160312	rs7077225	G	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.32;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	60273121	rs7100474	T	C	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr10	60273155	rs7079648	C	A	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	60273189	rs10571555	ACGGC	A	3609.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	60559047	rs2893789	G	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	60566137	rs3740451	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	60566473	rs7083601	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	60573753	rs9416746	G	T	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	60577393	rs4344442	T	C	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	60588560	rs7895817	A	G	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:78,127:0.62:205
chr10	60996453	rs10763600	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61005244	rs2452505	G	C	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	61007534	rs1459996	A	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	61007592	rs2446724	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	61014056	rs1903252	C	A	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	61062485	rs74556596	T	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr10	61083666	rs113475042	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=1.447;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr10	61083690	rs34090373	A	AGTTG	2309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.50;ReadPosRankSum=1.808;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:29,55:0.65:84
chr10	61111975	rs284606	G	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	61122268	rs3078330	T	TTA	2689.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	61564020	rs3841635	CTT	C	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	61574357	.	AAC	A	741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.919;QD=4.08;ReadPosRankSum=1.678;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:138,44:0.24:182
chr10	61574480	rs143441008	A	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:197,127:0.39:324
chr10	61592447	rs6479653	G	C	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	61592547	rs6479654	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61612466	rs3215226	TA	T	354.06	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr10	61802342	rs2393603	C	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr10	61802353	rs2393604	A	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:132,57:0.30:189
chr10	61802374	rs2393605	AA	TT	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;JOINED;set=Intersection	GT:AD:AF:DP	0/1:190,81:0.30:271
chr10	61802550	rs9888033	A	T	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.960;QD=7.51;ReadPosRankSum=-0.779;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:127,84:0.40:211
chr10	61802561	rs2393607	G	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.983;QD=7.90;ReadPosRankSum=-1.083;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:105,68:0.39:173
chr10	61802577	rs5785427	T	TC	4155.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	61815367	rs4948384	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.34;ReadPosRankSum=2.195;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	61815367	.	CCG	TCA	218	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=5;NR=0;PP=218;QD=54.2935749724;SC=AAGTAAAGCACCGATACTTTC;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=5;WE=61815377;WS=61815357;set=Platypus	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	61815369	rs12254031	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.06;ReadPosRankSum=1.805;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	61815712	rs12261793	T	C	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:80,152:0.66:232
chr10	61819049	rs10733757	T	G	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	61823109	rs4568956	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr10	61832626	rs41274674	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:173,92:0.35:265
chr10	61841105	rs10218890	C	T	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr10	61871430	rs10821675	C	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	61871598	rs4369346	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	61893898	rs3213829	T	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	61897132	rs377731644	G	GAAAAAA	303.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.94;ReadPosRankSum=-1.126;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	61900356	rs6479694	A	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	61926728	rs11814723	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	61956386	.	G	GAAA	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-2.399;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr10	61959881	rs76733192	G	A	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:92,166:0.64:258
chr10	61962651	rs6479699	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	61965409	rs75461667	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr10	61965625	rs2297979	A	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.616;QD=4.14;ReadPosRankSum=-0.572;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:177,67:0.27:244
chr10	62021593	rs16914671	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.734;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr10	62039185	rs7910450	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	62039654	rs1380451	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr10	62539788	rs2260179	C	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.889;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	62540063	rs2448344	T	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	62548098	rs2456772	G	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	62551815	rs3212319	GC	G	1995.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr10	62551889	rs2456777	AA	GT	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	62553763	rs1871446	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	62634621	rs2279942	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	62634839	rs12251212	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:177,92:0.34:269
chr10	62671305	rs2271126	G	A	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:368,178:0.33:546
chr10	63175794	rs16916122	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.851;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr10	63422754	rs151189963	G	GGGGCCGACCCCGGCA	5173.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.000;QD=30.98;ReadPosRankSum=-1.258;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr10	63519724	rs16916605	C	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.767;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:121,26:0.18:147
chr10	63519764	rs77805435	T	C	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.144;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:223,68:0.23:291
chr10	63520006	rs61850526	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr10	63520698	rs1992625	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,43:0.39:111
chr10	63760087	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=8.081;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=3.721;QD=1.27;ReadPosRankSum=-0.535;SOR=2.132;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr10	63819250	rs115052976	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	63944176	rs3125730	A	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	63944188	rs7903510	A	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.336;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr10	63958112	rs3125734	T	C	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:79,138:0.64:217
chr10	63964653	rs41274060	C	T	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chr10	63974950	rs4559572	C	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	63976912	rs149331212	TAGCTTC	T	5154.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:112,132:0.54:244
chr10	63977011	rs148142088	GAAAAA	G,GAAAAAA	3459.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.19;ReadPosRankSum=0.145;SOR=0.657;set=HC	GT:AD:AF:DP	1/2:15,98,30:0.69,0.21:143
chr10	63977069	rs1432414	A	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr10	63977842	rs113180872	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr10	63978077	rs11355398	GA	G	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.610;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr10	63982984	rs10740069	A	G	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-1.211;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr10	63995983	rs3852448	C	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	64000878	rs1368158	T	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.694;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr10	64005586	rs28515713	G	A	60.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.20;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	64005711	rs3815999	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr10	64019037	rs10675790	A	ATAAAT	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr10	64136710	rs149800343	CAG	C	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	64136751	rs1873686	G	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	64148125	rs3852424	C	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:122,43:0.26:165
chr10	64148369	rs2893897	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	64239663	rs77188710	C	T	3792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=0.269;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:73,180:0.71:253
chr10	64239709	rs11819488	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:90,29:0.24:119
chr10	64382990	rs113542007	C	T	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:125,260:0.68:385
chr10	64415184	rs7076156	A	G	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	64415413	rs7094595	T	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr10	64426056	rs4746516	G	T	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	64573771	rs224083	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	64911911	rs7910455	A	C,G	5702.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=266;set=Intersection	GT:AF:DP	1/2:0.56,0.43:257
chr10	64937415	rs2306263	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.068;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr10	64944317	rs10740107	T	A	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.494;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:141,72:0.34:213
chr10	64953311	rs4747098	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	64953351	rs73288497	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	64967445	rs1904294	A	T	12271.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr10	64969000	rs201215278	T	TAACAA	526.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr10	64975001	rs113325920	T	TA	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-2.322;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:90,50:0.36:140
chr10	64975376	rs34037273	A	G	5721.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:117,267:0.70:384
chr10	64976886	rs68053125	T	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr10	65139945	rs7477425	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;MQ=59.52;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	65225245	rs10761770	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.320;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:157,52:0.25:209
chr10	65281137	rs377532429	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	65322464	rs36027145	A	ATCAG	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:114,76:0.40:190
chr10	65383515	rs71463535	A	ATG	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	65928826	rs10740151	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	68040240	rs10997034	G	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.776;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:78,37:0.32:115
chr10	68040325	rs4548513	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	68535082	rs5785786	C	CT	1549.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,79:0.59:133
chr10	68685929	rs7902006	G	C	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	69281495	rs10509289	C	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.034;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr10	69366602	rs3750863	T	C	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	69556802	rs79297589	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr10	69571264	rs77068920	A	C	5835.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:154,275:0.64:429
chr10	69583206	rs962608	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	69647332	rs932657	G	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	69668909	rs35737493	T	A	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.395;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr10	69672911	rs140377585	CTG	C	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr10	69699478	rs142773200	GAT	G	36.70	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	69716602	.	TA	T	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.449;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr10	69719074	rs7907843	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	69750788	rs5785841	GA	G	3332.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=6.461;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.379;QD=18.41;ReadPosRankSum=0.920;SOR=0.214;set=HC	GT:AD:AF:DP	1/1:11,170:0.94:181
chr10	69755112	rs2308195	C	CCTAT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	69799236	rs79148261	C	T	2854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.493;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:87,141:0.62:228
chr10	69902549	rs3814180	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr10	69902919	rs28429181	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.78;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	69905300	rs2817760	G	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	69905415	rs2635993	C	T	109.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	69908063	rs11598744	A	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr10	69908157	rs11596653	T	C	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:81,131:0.62:212
chr10	69909756	rs2817759	T	C	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr10	69934258	rs3814182	C	G	5324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DB;DP=978;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-1.809;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:644,328:0.34:972
chr10	69934467	rs3814183	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	69934535	rs7917519	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	69935059	rs7097776	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:58,98:0.63:156
chr10	69935235	rs6480306	T	C	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	69948844	rs10733838	T	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	69948901	rs372714890	C	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr10	69954290	rs7081213	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr10	69955140	rs7069569	T	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr10	69957340	rs7095603	G	A	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.931;QD=18.43;ReadPosRankSum=0.241;SOR=1.416;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr10	69957350	rs7095607	G	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.861;QD=22.77;ReadPosRankSum=-0.955;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr10	69957375	rs7095492	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr10	69959097	rs7079549	G	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	69959345	rs11279655	GCTGGGA	G	4582.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chr10	69959397	rs7079974	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr10	69961470	rs7913133	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	69961501	rs7913146	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	69961537	rs370818222	CA	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.719;QD=1.36;ReadPosRankSum=1.733;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr10	69966392	rs3814185	T	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	69969986	rs10998022	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	70045201	rs7909365	C	A	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	70045264	rs3816299	A	C	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	70048389	.	G	A	680.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,44:0.32:136
chr10	70051810	rs3835100	A	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	70051928	rs10823171	A	G	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	70055967	.	TA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=2.635;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr10	70056600	rs2394470	C	T	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	70101588	.	C	T	609.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr10	70105560	rs1162753	G	A	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:163,238:0.59:401
chr10	70123243	rs10823183	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr10	70143774	rs7899885	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr10	70153014	rs11432212	C	CA	54.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	70161577	rs75147977	T	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.29;ReadPosRankSum=-1.282;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	70166586	rs74507746	C	T	4515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=855;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-1.450;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:559,278:0.33:837
chr10	70166913	rs59831114	T	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	70178725	rs150738138	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	70179713	rs7912227	C	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:172,95:0.36:267
chr10	70182680	rs10998153	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	70197115	rs12775711	G	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr10	70206033	rs34922453	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.662;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:60,24:0.29:84
chr10	70253368	rs201340142	G	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr10	70276728	rs2664412	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	70332066	rs3814177	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr10	70392319	rs10733844	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	70392375	rs1747	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-4.505;QD=7.31;ReadPosRankSum=-2.326;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:54,36:0.40:90
chr10	70392470	rs114946478	G	A	2345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-2.487;QD=6.61;ReadPosRankSum=3.500;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:216,139:0.39:355
chr10	70404981	rs74925160	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:193,94:0.33:287
chr10	70405237	rs12241767	G	A	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=2.085;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:175,78:0.31:253
chr10	70405439	rs74412312	G	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:133,73:0.35:206
chr10	70405855	rs3998860	A	G	5322.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:146,247:0.63:393
chr10	70406864	rs36081642	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr10	70411536	rs12243354	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.947;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr10	70442868	rs11284778	GA	G	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr10	70481547	rs1616158	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr10	70482337	rs113619196	C	T	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:63,143:0.69:206
chr10	70497482	rs1162961	A	G	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	70497799	rs1149679	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr10	70502288	rs1300253	G	A	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.563;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:62,127:0.67:189
chr10	70502426	rs1300252	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	70520636	rs58477996	CAAA	C	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.85;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	70525591	rs1149688	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr10	70531217	rs10823258	C	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr10	70534744	rs1782323	A	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr10	70645258	rs16925882	C	A	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=4.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.547;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:207,71:0.26:278
chr10	70652272	rs4472827	G	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	70661258	rs112700296	G	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:126,89:0.41:215
chr10	70666271	rs72371573	AGGAAGGG	A	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr10	70670876	rs113058356	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.600;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr10	70695972	rs12260649	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr10	70696009	rs7084726	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	70696039	rs7084742	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	70696713	rs5030895	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	70696908	rs1539166	G	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	70716106	rs5030896	A	G	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	70722989	rs10998504	A	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr10	70723857	.	G	GAA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.759;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr10	70734589	rs3740595	T	A	1306.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.877;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.265;SOR=0.372;set=HC	GT:AD:AF:DP	1/1:5,73:0.94:78
chr10	70734599	rs5030902	A	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.66;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	70760366	rs2245679	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=-0.289;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	70775695	rs114205227	A	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:268,123:0.31:391
chr10	70856852	rs2229498	G	A	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:50,119:0.70:169
chr10	70863699	rs4892	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,36:0.27:132
chr10	70883949	rs10998587	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.948;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr10	70892743	rs61741958	T	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.284;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr10	70892791	rs5030932	C	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	70893393	rs73274608	G	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:175,88:0.33:263
chr10	70922159	rs61871361	T	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr10	70922300	rs7903329	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.030;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	70928446	rs61533192	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr10	70928468	rs58814700	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr10	70940052	rs33998366	C	T	5213.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:393,155:0.28:548
chr10	70940066	rs12251842	C	T	5700.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:401,178:0.31:579
chr10	70940314	rs35392688	C	T	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:95,160:0.63:255
chr10	70945840	rs5030910	C	T	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:62,127:0.67:189
chr10	70945850	rs954026	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:116,65:0.36:181
chr10	70946097	rs72812152	A	G	206.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-1.564;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr10	70955056	rs5018859	A	G	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:117,183:0.61:300
chr10	70958327	rs5030911	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr10	70962149	rs7902214	GA	TT	967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.722;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr10	70962900	rs7905984	A	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr10	70967398	rs73278660	A	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr10	70967707	rs73278661	T	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr10	70968193	rs7897299	C	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	70968804	.	GT	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.854;QD=1.53;ReadPosRankSum=-1.987;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr10	70992413	rs874557	G	A	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	70992664	rs874556	C	T	9581.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr10	70992912	rs5030970	A	T	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	70992949	rs5030971	T	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	70992970	rs5030972	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	70998738	rs4145930	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-1.465;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:91,53:0.37:144
chr10	71000540	rs3740598	GG	AT	3852.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	0/1:57,98:0.63:155
chr10	71010026	rs4745978	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	71010269	rs78582637	C	G	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:305,130:0.30:435
chr10	71018660	rs1111335	T	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	71021855	rs75627590	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr10	71027231	rs2611	G	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	71048351	rs115006385	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	71055459	rs4746837	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.785;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr10	71060530	rs142614253	T	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.749;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr10	71060610	rs906220	A	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	71060634	rs906221	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	71060696	rs906222	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr10	71060707	rs906223	T	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	71075678	rs77682879	G	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr10	71098195	rs906216	G	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	71098295	rs7912524	T	A	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	71098436	.	AGT	A	85	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=3;MGOF=12;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=85;QD=29.3333333333;SC=TGGAGATGTGAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=3;WE=71098451;WS=71098426;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr10	71103597	rs1133189	C	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	71142183	rs4746846	G	A	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:101,233:0.70:334
chr10	71142420	rs748235	G	A	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	71144702	rs749105	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	71151885	rs2229387	C	T	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	71152091	rs2278745	T	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	71160828	rs14006	C	T	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:79,165:0.68:244
chr10	71160897	rs13139	C	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr10	71161281	rs12216	T	C	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:106,191:0.64:297
chr10	71164595	rs58692969	T	C	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:75,185:0.71:260
chr10	71164692	rs57900755	T	C	7052.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:181,341:0.65:522
chr10	71167027	rs142415572	T	C	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:203,134:0.40:337
chr10	71167047	rs7097827	A	G	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:134,189:0.59:323
chr10	71167094	rs7098065	C	T	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:101,132:0.57:233
chr10	71167145	rs7097971	A	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chr10	71168620	.	GCCAGCCCCCCGCCCCCTCCAGGCCCCGCCCCCT	G	3118.73	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	71168670	rs186418484	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr10	71168685	rs55953810	A	T	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	71168766	rs79030584	C	G	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:113,232:0.67:345
chr10	71168945	rs1549797	C	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	71174636	rs150956058	TAC	T	1221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=941;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.615;QD=1.36;ReadPosRankSum=2.571;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:785,113:0.13:898
chr10	71175609	rs10998765	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr10	71176066	rs61732394	T	C	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:96,158:0.62:254
chr10	71211368	rs144180646	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:229,108:0.32:337
chr10	71243393	rs12256348	G	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.777;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr10	71244832	rs2305201	C	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr10	71258233	rs146335457	T	C	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-2.125;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:100,34:0.25:134
chr10	71258309	rs111445515	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr10	71263991	rs5785921	G	GT	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr10	71264325	rs1652804	G	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:57,85:0.60:142
chr10	71265881	rs115160228	G	A	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:181,113:0.38:294
chr10	71267407	.	GTT	G	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.177;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	71267411	rs201904794	T	TG	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.528;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr10	71267414	.	T	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.066;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr10	71267416	.	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.445;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr10	71267419	rs1652803	T	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.330;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr10	71391538	rs1381932	T	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:199,116:0.37:315
chr10	71391707	rs2262274	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.211;QD=3.49;ReadPosRankSum=0.116;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr10	71391719	rs144716370	C	CTGGGTAAGACT	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.183;QD=3.65;ReadPosRankSum=-0.571;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr10	71392495	rs2616089	T	A	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.257;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:84,43:0.34:127
chr10	71392501	rs2616088	G	C	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.085;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr10	71392557	rs12020	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:156,87:0.36:243
chr10	71392692	rs1052152	T	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:208,101:0.33:309
chr10	71582312	rs116329038	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr10	71620388	rs10762320	G	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.199;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr10	71620436	rs67173564	A	AC	5568.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.02;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	71620532	rs12573749	G	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:120,62:0.34:182
chr10	71620671	rs4341432	C	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr10	71634969	rs59942449	G	A	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:48,131:0.73:179
chr10	71634986	rs59126631	A	T	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	71647169	rs11813062	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,34:0.34:101
chr10	71647196	rs35268667	GT	G	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.219;QD=4.12;ReadPosRankSum=-1.278;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:62,37:0.37:99
chr10	71647223	rs11816811	A	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr10	71647298	rs10999011	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr10	71649046	rs10999015	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr10	71649309	rs2683572	A	G	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	71655443	rs1227744	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	71657272	rs1227746	A	G	16686.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr10	71658512	rs1227747	G	A	16273.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,633:1.00:633
chr10	71658719	rs113135526	A	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	71664845	rs371102775	AC	A	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	71665421	rs10999022	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr10	71665676	rs2683575	G	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr10	71681530	rs2274180	C	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr10	71684521	rs3858161	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr10	71685532	.	G	A	2033.77	.	AC=1;AF=0.500;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,94:0.67:141
chr10	71686905	rs3215785	CG	C	1743.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,67:0.73:92
chr10	71689645	rs2763339	T	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr10	71689966	rs59283631	TG	T	460.90	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr10	71697229	rs3750782	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.067;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr10	71697516	rs3750781	G	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr10	71703995	rs3750780	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	71874526	rs72807044	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	71874569	rs16927320	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	71874683	rs2271696	G	A	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	71874734	rs2271695	G	A	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	71874866	rs61736904	T	C	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	71874951	rs72807047	G	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	71880190	rs2280201	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.210;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr10	71880757	rs4746962	A	C	9077.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	71905695	rs10999158	A	G	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:173,277:0.62:450
chr10	71970259	rs3969945	G	A	231.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr10	71974468	rs7911572	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	71989884	rs9415958	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-2.073;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr10	71990196	rs7904074	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr10	71990221	rs145685271	AT	A	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	72015409	rs10999212	C	A	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.717;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:246,92:0.27:338
chr10	72043389	rs1889394	T	G	16009.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:1,624:1.00:625
chr10	72043481	rs372700299	G	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:48,145:0.75:193
chr10	72061079	rs10740336	C	T	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	72061361	rs35359681	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:89,36:0.29:125
chr10	72061420	rs4746997	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	72179746	rs1043098	C	T	9613.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	72179868	rs113403016	C	T	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:48,96:0.67:144
chr10	72181272	rs201964934	TCTC	T	664.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr10	72181460	rs3793809	G	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	72195439	rs1904589	T	C	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr10	72207517	rs34717077	AC	A	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr10	72207672	rs143643460	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:191,82:0.30:273
chr10	72288969	.	C	CA	110.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.958;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr10	72288970	.	C	A	52.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.43;ReadPosRankSum=1.231;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	72291078	rs78567837	T	C	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:352,161:0.31:513
chr10	72298631	rs1122918	T	C	13543.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr10	72301301	rs114791485	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr10	72306967	rs3824764	C	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:32,84:0.72:116
chr10	72306978	rs3824763	C	A	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:33,103:0.76:136
chr10	72324143	rs7093516	A	G	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	72358577	rs885822	G	A	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:250,176:0.41:426
chr10	72359090	.	C	T	65.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	72360098	rs12263464	C	G	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.249;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:300,129:0.30:429
chr10	72432596	.	C	T	3727.77	.	AC=1;AF=0.500;AN=2;DP=257;set=Intersection	GT:AD:AF:DP	0/1:78,175:0.69:253
chr10	72434194	rs614201	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr10	72434745	rs144956824	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr10	72462282	.	C	T	1286.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr10	72468569	rs113420756	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.589;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:50,33:0.40:83
chr10	72489067	rs35906753	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-1.906;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:40,58:0.59:98
chr10	72492212	rs2587478	T	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	72492244	rs10740357	A	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	72493876	rs10740358	T	C	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	72494778	rs12765664	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr10	72496375	rs1861517	A	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.208;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr10	72505226	rs12253119	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr10	72505315	rs2791183	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	72509809	rs2541229	C	T	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr10	72511778	rs10999511	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	72513515	rs73278044	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,17:0.25:68
chr10	72517837	rs6480463	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:46,91:0.66:137
chr10	72520330	rs10823615	A	G	14276.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:286,665:0.70:951
chr10	72520567	rs10823616	A	G	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:215,264:0.55:479
chr10	72531080	.	CT	C	1079.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=3.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.110;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:115,40:0.26:155
chr10	72532238	rs2253801	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr10	72533910	rs7077672	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	72535007	rs2254174	C	T	5034.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:140,244:0.64:384
chr10	72536002	.	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	0/1:55,115:0.68:170
chr10	72536288	rs7897034	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.15;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	72536288	.	TGTGGT	CGTGGC,CGTGGT	335	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=2,4;NR=14,24;PP=335,81;QD=24.2792421789;SC=TTTGCTGCATTGTGGTAAGGT;SbPval=0.68;Source=Platypus;TC=28;TCF=4;TCR=24;TR=16,28;WE=72536301;WS=72536278;set=Platypus	GT:AF:DP	0/1:0.57:28
chr10	72536293	rs2254308	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.396;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr10	72536779	rs2254422	A	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	72536936	rs2254433	A	G	3798.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:141,187:0.57:328
chr10	72537450	rs2254445	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	72538595	rs13376790	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr10	72541646	rs144879427	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:159,98:0.38:257
chr10	72576714	rs141388805	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr10	72610767	rs11594636	A	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=1.327;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr10	72614694	rs151019151	A	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr10	72617234	rs147526258	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	72619205	rs827255	C	T	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	72636450	rs923177	T	G	3763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-1.707;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:106,185:0.64:291
chr10	72643671	rs9712	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr10	72648083	rs2854614	TC	GT	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.322;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.129;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=2.079;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr10	72648086	rs827239	A	G	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	72648134	rs827238	A	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	72813306	rs10762420	G	A	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr10	72813361	rs10740361	A	G	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr10	73044382	rs10823716	T	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr10	73044924	rs7350453	A	G	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=1.284;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr10	73044930	rs7350455	C	T	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.662;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.73;ReadPosRankSum=-0.062;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr10	73044954	rs6480503	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr10	73046546	rs112144078	C	T	11379.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:222,531:0.71:753
chr10	73046625	rs7069294	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:67,132:0.66:199
chr10	73047555	rs7074042	C	T	6753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-0.211;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:216,322:0.60:538
chr10	73047593	rs7074280	G	A	7509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=3.747;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=0.913;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:1,281:1.00:282
chr10	73050983	rs3740462	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr10	73053556	rs35766388	G	A	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.393;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:220,94:0.30:314
chr10	73078862	rs7924115	C	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	73079147	rs17525188	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=-1.294;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	73082563	rs2277257	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-2.242;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:216,90:0.29:306
chr10	73104056	rs2243540	A	G	15255.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr10	73115845	rs141413620	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr10	73115941	rs2252997	T	C	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	73121645	rs2487067	C	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	73121913	rs2487068	A	G	24398.77	.	AC=2;AF=1.00;AN=2;DB;DP=949;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,940:1.00:940
chr10	73121945	rs1084004	T	C	23839.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,893:1.00:893
chr10	73199595	rs7902757	C	T	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	73199667	rs74144963	C	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	73269692	rs7901859	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	73269714	rs2297953	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	73270906	rs3802720	T	C	11965.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr10	73270982	rs3802719	G	A	12433.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	73270995	rs3802718	A	G	11050.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	73326757	rs7087735	C	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	73337850	rs6480531	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:139,56:0.29:195
chr10	73375322	rs111033474	G	A	7902.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:184,366:0.67:550
chr10	73377314	rs7903772	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr10	73377330	rs6480536	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr10	73403490	rs10823810	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.841;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr10	73403605	.	C	A	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.104;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:272,107:0.28:379
chr10	73434906	rs10999947	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:58,126:0.68:184
chr10	73439066	rs3802717	A	T	5305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-2.254;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:115,236:0.67:351
chr10	73439101	rs1227042	T	C	17591.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,673:1.00:673
chr10	73442100	rs116678912	G	A	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr10	73461708	rs116173714	T	C	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr10	73464651	rs79742451	C	T	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:108,222:0.67:330
chr10	73466709	rs10823829	T	C	4785.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:142,226:0.61:368
chr10	73466986	.	G	A	1607.77	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr10	73472450	rs79805606	G	A	8577.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:201,391:0.66:592
chr10	73472868	rs2394838	C	G	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:133,159:0.54:292
chr10	73472882	rs2166631	C	T	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:137,167:0.55:304
chr10	73483756	rs3802712	T	C	4359.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:119,211:0.64:330
chr10	73492079	rs1227065	A	G	16191.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr10	73494159	rs1227062	T	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	73494229	rs1227061	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	73494288	rs55724553	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:110,50:0.31:160
chr10	73499561	rs10762474	C	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	73500770	rs16929288	C	T	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:101,180:0.64:281
chr10	73501374	rs1227052	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	73501556	rs1227051	G	A	15442.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr10	73514911	rs9415993	G	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr10	73515103	rs3747858	G	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:111,38:0.26:149
chr10	73520632	rs3747869	A	C	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	73521578	rs3747866	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:235,100:0.30:335
chr10	73521830	rs41281326	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:153,74:0.33:227
chr10	73537358	rs41281328	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr10	73537388	rs7917781	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr10	73537821	rs10999996	G	T	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=22.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.479;SOR=3.601;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chr10	73538109	rs10740390	C	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	73538896	rs6480555	T	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr10	73539148	rs111033480	G	A	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:135,176:0.57:311
chr10	73544604	rs7068810	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:71,30:0.30:101
chr10	73550969	rs10466026	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:315,155:0.33:470
chr10	73558030	rs7068357	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:113,47:0.29:160
chr10	73558852	rs4747193	A	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	73558886	rs4747194	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:139,66:0.32:205
chr10	73558952	rs4747195	C	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:285,163:0.36:448
chr10	73559445	rs74145675	G	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr10	73560576	rs74145677	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	73562538	rs12773941	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr10	73562744	rs10823849	G	A	3105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-3.152;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:491,194:0.28:685
chr10	73566203	rs4747197	T	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.738;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr10	73569475	rs57717338	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr10	73570334	rs11818398	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:151,89:0.37:240
chr10	73570371	rs144466193	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr10	73571581	rs140848302	C	CCT	4451.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	73571619	rs41281340	C	G	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:80,140:0.64:220
chr10	73571883	rs11000015	C	T	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr10	73576307	rs7869	C	T	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	73577267	rs4747202	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr10	73578503	rs885828	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	73578672	rs749823	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr10	73578882	rs4747203	T	C	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr10	73579217	rs11000016	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr10	73579405	rs3747860	C	T	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:363,187:0.34:550
chr10	73579979	rs55829339	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr10	73581560	rs2070968	A	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:155,69:0.31:224
chr10	73583520	rs2249814	G	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	73585526	rs2593163	A	G	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:64,111:0.63:175
chr10	73591779	rs75284730	G	T	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:58,110:0.65:168
chr10	73591817	rs78642494	T	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr10	73594040	rs138354580	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr10	73594120	rs141133813	G	A	2472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.274;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:53,112:0.68:165
chr10	73594275	rs138010978	C	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,105:0.64:164
chr10	73610982	rs2070188	G	A	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:168,119:0.41:287
chr10	73823019	rs1668172	A	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	73824181	rs2242251	C	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	73824203	rs2242252	T	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	73827292	rs1530804	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	73832770	.	C	T	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-0.277;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:58,89:0.61:147
chr10	73832859	rs896074	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	73846826	rs1245546	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	73848075	rs2306324	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr10	73848105	rs10713496	TG	T	519.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	73856984	rs3312	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:91,39:0.30:130
chr10	73921162	rs7086647	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr10	73956553	rs56902153	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=2.060;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:46,22:0.32:68
chr10	73958528	rs74148212	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr10	73958595	rs73274987	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	73964004	rs4237336	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	73964243	rs11000217	G	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:152,85:0.36:237
chr10	73970451	rs7069703	G	T	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:108,191:0.64:299
chr10	73972957	rs11558719	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=23.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.957;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:103,69:0.40:172
chr10	73976471	rs73276919	G	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr10	73990224	rs12252038	G	A	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.628;QD=4.23;ReadPosRankSum=1.456;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:208,84:0.29:292
chr10	74033855	rs139786794	CGGTCT	C	1613.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:117,48:0.29:165
chr10	74034202	rs111829278	C	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr10	74034357	rs76526968	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:19,77:0.80:96
chr10	74128153	rs56957879	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,63:0.32:196
chr10	74182917	rs10823922	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.579;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:101,38:0.27:139
chr10	74183251	rs7069357	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=-2.057;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	74234817	rs915432	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	74235192	rs5786077	A	AT	64.37	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr10	74235771	rs11000322	G	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	74293584	rs10509343	A	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	74293601	rs11818304	T	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	74326596	.	TATG	T	57	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=57;QD=34.5;SC=TAGTGGTAGTTATGATGATGA;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=2;WE=74326606;WS=74326586;set=Platypus	GT:AD:AF:DP	1/0:10,2:0.17:12
chr10	74452931	rs112298026	AGT	A	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	74452953	.	T	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.887;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	74452955	.	T	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.887;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	74452957	rs7905448	T	A	347.86	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	74619083	rs34072881	C	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:176,85:0.33:261
chr10	74644012	rs16930154	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	74683925	rs7921735	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	74684417	rs16930172	A	G	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	74695287	rs2461917	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	74773975	rs73272315	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	74874097	.	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.520;QD=2.12;ReadPosRankSum=1.460;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr10	74882182	rs191258599	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	74885409	.	TTA	T	64	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	74896700	rs200091640	G	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr10	75000815	rs58421991	G	GA	5607.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	75135833	.	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.658;QD=1.22;ReadPosRankSum=0.960;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr10	75155544	rs10718150	CA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.588;QD=1.30;ReadPosRankSum=0.709;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr10	75186612	rs2297452	G	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	75214137	rs61458056	TA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.557;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr10	75283637	rs377326169	AT	A	189.84	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	75283642	.	TTATTA	T	174.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.95;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	75289359	rs12255505	C	A	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	75406912	rs34163229	G	T	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	75407290	rs3812629	G	A	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	75407649	rs4746139	A	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr10	75415677	rs60632610	C	T	10388.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr10	75506674	rs2306325	T	C	12461.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr10	75519322	rs10740418	T	C	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr10	75525999	rs3849969	A	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	75527494	rs16930870	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr10	75527708	rs4746147	A	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	75529505	rs143955819	A	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,43:0.38:112
chr10	75530013	rs3088070	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	75530296	rs112709806	TA	T	1316.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr10	75532651	rs113017272	C	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:199,132:0.40:331
chr10	75542308	rs116658901	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr10	75545251	rs12256103	A	G	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	75549916	rs2292307	C	A	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:112,181:0.62:293
chr10	75558867	rs2271271	G	A	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	75559077	rs11000780	G	A	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:177,252:0.59:429
chr10	75560383	rs145031720	T	TTATC	7652.73	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:152,191:0.56:343
chr10	75561582	rs16930909	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	75564660	rs112868774	A	AT	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.538;QD=9.10;ReadPosRankSum=1.728;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr10	75566829	rs4114992	A	G	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	75575127	.	GC	G,GCC	411.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-0.412;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:3,7,16:0.27,0.62:26
chr10	75575138	rs113799665	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.07;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	75576483	rs12217245	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	75578720	rs4746151	G	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	75597289	rs2242255	T	A	8826.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	75599482	rs114593384	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr10	75607168	rs2242258	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr10	75607696	rs67135801	CA	C	1860.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	75608997	rs113189683	C	A	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:101,54:0.35:155
chr10	75672607	rs61567551	C	CA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-1.826;QD=0.53;ReadPosRankSum=-0.573;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr10	75672961	rs2227562	G	A	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr10	75673101	rs2227564	T	C	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	75673879	rs2227568	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr10	75843100	rs1908339	T	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr10	75854010	rs145537824	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr10	75863750	rs2270552	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr10	75867193	rs2279648	G	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,69:0.82:84
chr10	75871735	rs2131956	C	G	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr10	75874166	rs142879319	CGTGTGTGTGT	CGT,C	1907.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/1:0.96:52
chr10	75885817	rs1908331	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	75889760	rs35456205	GA	G	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:3,86:0.97:89
chr10	75896601	rs10762576	A	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr10	75936611	rs10824095	C	T	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	75960446	rs12252558	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=1.969;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	76285163	rs16931480	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr10	76349020	rs112610475	CT	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.368;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr10	76429870	rs10740443	T	C	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:69,154:0.69:223
chr10	76468101	rs116653664	T	C	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:109,190:0.64:299
chr10	76719679	rs4746249	C	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr10	76729632	rs3213967	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr10	76781905	rs71929101	GGAA	G	8752.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.204;QD=42.91;ReadPosRankSum=0.478;SOR=0.349;set=HC	GT:AD:AF:DP	1/1:1,203:1.00:204
chr10	76790935	rs3832681	TA	T	672.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr10	76803567	rs16931938	T	G	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr10	76818105	rs138302188	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr10	76854564	rs3088142	C	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:397,164:0.29:561
chr10	76855326	rs3740318	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr10	76855412	rs3740317	G	A	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.505;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:211,86:0.29:297
chr10	76857364	rs3824742	C	G	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:89,183:0.67:272
chr10	76861680	rs6480771	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	76861844	rs7093541	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.372;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr10	76867899	rs7912300	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	76928186	rs57250768	A	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.662;SOR=1.553;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr10	76928380	.	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DP=312;set=Intersection	GT:AD:AF:DP	0/1:205,98:0.32:303
chr10	76970831	rs77230810	G	T	6334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=1125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=2.349;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:734,381:0.34:1115
chr10	76971844	rs2804535	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	77312171	rs374745156	GT	G	3527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.662;QD=7.21;ReadPosRankSum=1.000;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:210,279:0.57:489
chr10	77542558	rs2133705	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr10	77795995	rs4745806	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	77807027	rs1898071	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr10	77807092	rs1898070	A	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr10	77818594	rs7924288	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr10	78637552	rs146393762	T	G	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:178,175:0.50:353
chr10	78649399	rs2288840	C	T	8728.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	78729669	rs2288837	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	78734129	rs74140236	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=1.659;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr10	78782876	rs7078109	T	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr10	78839127	.	AGT	AGTGT,A	183.76	.	AC=1,0;AF=0.500,0.00;AN=2;DP=22;set=Intersection	GT:AF:DP	0/1:0.43:21
chr10	78844579	rs34592624	G	GA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.141;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr10	78868165	rs138226779	CAAA	C	7419.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;QD=30.92;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:7,233:0.97:240
chr10	78871968	rs1347543	G	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr10	78944590	rs1131824	G	A	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	78977190	rs16934368	A	C	10370.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr10	79163867	rs596832	G	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr10	79163884	rs11002158	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr10	79552092	rs2165046	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	79552151	rs1058202	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	79553673	rs2812425	T	C	8118.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr10	79553803	rs41274578	C	T	20489.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:2,797:1.00:799
chr10	79565655	rs2289311	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	79566632	rs1058198	G	A	17245.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:1,692:1.00:693
chr10	79567742	rs148770167	CA	C	3460.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	79572304	rs114825724	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	79575879	rs1248638	A	G	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	79577001	rs7902053	A	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	79579047	rs1248635	A	G	11909.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr10	79584178	rs1248629	G	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	79589355	rs10559705	TCTCA	T	4608.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	79590726	rs1248663	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	79595417	rs1248661	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	79595472	rs7079783	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	79601560	rs7907788	G	A	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	79601822	rs16935401	C	T	19781.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr10	79603375	rs34891538	G	A	20100.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr10	79603423	rs12257229	C	T	16922.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr10	79614189	rs1248692	A	G	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	79616520	rs12243930	G	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	79616605	rs1248696	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	79628875	rs1248655	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	79740056	rs77363179	G	A	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	79744894	rs7912213	A	C	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	79745735	rs12241228	C	A	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:3,307:0.99:310
chr10	79745789	rs3815891	A	G	9392.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr10	79760001	rs2241551	T	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	79760686	rs7474957	T	G	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	79764621	rs79793998	G	A	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	79769567	rs5786314	A	AC	1001.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr10	79777299	rs7074690	C	A	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr10	79781195	rs113600478	G	GT	814.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	79784253	rs116289012	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	79785458	rs12248310	T	G	9088.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr10	79785825	rs3758464	T	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	79795580	rs16935560	T	G	10491.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	79799959	rs7899453	C	A	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	80288406	rs1865706	T	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	80310465	rs2670191	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	80310636	rs7090749	G	A	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	80762022	rs200386474	GGAAAGAAAGAAA	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.502;QD=6.67;ReadPosRankSum=-1.159;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	80763382	rs10762828	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:154,82:0.35:236
chr10	80763534	rs10762829	A	G	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	80968367	rs35380943	TC	T	1295.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr10	81037229	rs1250539	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr10	81045207	rs1250569	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr10	81045280	rs1250568	T	C	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.043;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:104,49:0.32:153
chr10	81053475	rs1250560	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:104,60:0.37:164
chr10	81053560	rs1250559	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr10	81058027	rs1250552	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:107,42:0.28:149
chr10	81060474	rs1250549	T	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr10	81060721	rs11002913	C	A	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:189,87:0.32:276
chr10	81060773	rs7908361	T	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr10	81060829	rs1782648	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	81064719	rs2296425	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	81064755	rs2296424	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.231;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr10	81065774	rs1250557	G	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	81073763	rs2997468	G	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr10	81074125	rs1782652	T	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.415;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr10	81107295	rs2233714	C	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr10	81108628	rs73307954	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,41:0.41:100
chr10	81111199	rs56065461	G	A	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:82,161:0.66:243
chr10	81112024	rs875427	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:88,48:0.35:136
chr10	81192577	rs7898643	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=7.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.081;SOR=1.664;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr10	81204896	.	A	ACGGTGGGG	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.555;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr10	81205053	.	G	A	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.415;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:111,48:0.30:159
chr10	81205059	rs77237755	G	A	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.736;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:129,60:0.32:189
chr10	81270164	.	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=0.823;QD=5.20;ReadPosRankSum=-0.666;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr10	81270173	.	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=46.76;MQRankSum=-2.023;QD=8.57;ReadPosRankSum=-0.289;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr10	81270253	rs373503554	A	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:111,60:0.35:171
chr10	81270319	rs369628215	T	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:139,85:0.38:224
chr10	81270425	.	A	AG	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-3.675;QD=12.43;ReadPosRankSum=0.793;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr10	81272881	rs199829110	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr10	81317045	rs1965708	G	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-1.958;QD=4.76;ReadPosRankSum=0.401;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:316,136:0.30:452
chr10	81318545	rs2217231	A	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	81318593	rs199733516	A	AG	4108.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:62,133:0.68:195
chr10	81318621	rs17884396	C	T	7697.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	81374651	rs1250991	C	T	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	81680976	rs2819107	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	81681454	rs2257414	A	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=58.52;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	81682527	rs7919775	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:124,62:0.33:186
chr10	81682645	rs1054053	A	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	81697811	rs4469829	C	T	5205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=3.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.142;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:248,143:0.37:391
chr10	81697818	rs1051246	A	G	5327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=4.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-1.081;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:246,153:0.38:399
chr10	81698097	rs2819098	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	81701722	rs2243639	T	C	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	81702422	rs1998375	C	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:220,105:0.32:325
chr10	81702722	rs1998374	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr10	81706324	rs721917	A	G	9315.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	81841692	rs1932574	G	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr10	81901722	rs745182	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr10	81904638	rs2819874	G	A	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,65:0.75:87
chr10	81904743	rs115345620	G	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=1.550;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:215,79:0.27:294
chr10	81915790	rs2789687	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	81917708	rs1079242	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr10	81921918	rs2245168	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr10	81923205	rs2236558	T	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:126,47:0.27:173
chr10	81923961	rs2236557	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr10	81925785	rs2573348	C	T	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.579;QD=26.65;ReadPosRankSum=4.300;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:38,73:0.66:111
chr10	81925792	.	ACG	A	212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.012;QD=1.93;ReadPosRankSum=-2.475;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr10	81925795	rs9421228	C	T	2996.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.571;QD=26.52;ReadPosRankSum=4.514;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:38,75:0.66:113
chr10	81925796	rs138741116	GCGCACACACACA	G	2367.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.912;QD=19.41;ReadPosRankSum=3.156;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:47,75:0.61:122
chr10	81925982	.	C	CA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=6.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.173;SOR=2.076;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr10	81926702	rs1049550	G	A	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:69,139:0.67:208
chr10	81932790	rs2236556	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr10	81993489	rs11202256	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:72,118:0.62:190
chr10	81995059	rs200784765	A	G	5227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.16;MQRankSum=-4.415;QD=25.63;ReadPosRankSum=1.131;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:73,131:0.64:204
chr10	81995062	rs201999517	A	G	5227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.11;MQRankSum=-4.598;QD=26.01;ReadPosRankSum=0.708;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:71,130:0.65:201
chr10	82012599	rs12219032	T	C	10808.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:258,503:0.66:761
chr10	82012748	rs12217395	G	A	10017.77	.	AC=1;AF=0.500;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	0/1:446,480:0.52:926
chr10	82012954	rs12773664	A	G	13347.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:293,372:0.56:665
chr10	82012967	rs12411782	G	T	12248.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:248,306:0.55:554
chr10	82013119	rs12411806	G	A	5995.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:158,266:0.63:424
chr10	82013134	rs1298908	C	T	6480.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:312,177:0.36:489
chr10	82013146	rs2573326	T	C	6762.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:340,194:0.36:534
chr10	82033594	rs2993763	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr10	82033683	rs4933327	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr10	82034262	rs2994388	G	A	3766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.976;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:388,219:0.36:607
chr10	82034842	rs10887711	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	82034854	rs10788546	T	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.15;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	82040052	rs1143694	A	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	82040346	rs2282367	A	G	11808.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr10	82049251	rs145126070	T	TTTCTTC,TTTC	2306.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=121;set=Intersection	GT:AF:DP	1/1:0.97:59
chr10	82095968	rs1340383	T	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	82111460	rs11202652	T	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	82112488	rs1572819	A	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	82122269	rs115489921	G	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.627;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr10	82126808	rs1047952	C	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.40;ReadPosRankSum=1.068;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	82173664	rs113578157	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.127;QD=7.61;ReadPosRankSum=2.436;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:59,48:0.45:107
chr10	82173755	rs150942287	GT	G	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.887;QD=10.02;ReadPosRankSum=-1.174;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr10	82182296	rs1870142	G	A	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	82182328	rs1870143	G	A	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.397;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.147;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:38,69:0.64:107
chr10	82182405	rs5786455	C	CT	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	82185828	rs77000305	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr10	82191643	rs6585994	A	G	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	82269238	rs10785897	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	82275885	rs41286898	C	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr10	82276043	rs35179410	T	C	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.888;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:137,50:0.27:187
chr10	82280188	rs7099280	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	82280551	rs76479920	T	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:257,115:0.31:372
chr10	82363340	rs7069048	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr10	82363404	rs7075840	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:119,61:0.34:180
chr10	82393954	rs56968814	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr10	82394146	rs71483314	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr10	84498502	rs138339336	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.224;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	84625107	rs478010	C	T	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.898;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:231,109:0.32:340
chr10	84718677	rs17101139	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr10	84733421	rs186381891	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.942;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	84738992	rs999799	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	84744926	rs17101193	C	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:154,56:0.27:210
chr10	84745040	rs17101196	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:115,76:0.40:191
chr10	85903678	rs17103143	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:59,14:0.19:73
chr10	85903726	rs2306320	C	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr10	85903888	rs10887241	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr10	85908688	rs7069909	G	A	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	85936342	rs73315862	C	T	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:98,150:0.60:248
chr10	85944313	rs12250279	A	T	3438.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=-1.274;SOR=0.579;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr10	85944313	.	ATTTTTTTTT	TTTTTTTTTA,TTTTTTTTTT	909	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=9;HapScore=1;MGOF=10;MMLQ=27;MQ=60.0;NF=37,58;NR=14,23;PP=909,342;QD=18.8719191149;SC=TTGCTTTGAAATTTTTTTTTA;SbPval=0.58;Source=Platypus;TC=84;TCF=60;TCR=24;TR=51,81;WE=85944330;WS=85944303;set=Platypus	GT:AF:DP	0/1:0.61:84
chr10	85944322	rs35568118	T	A	1735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=3.641;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:65,90:0.58:155
chr10	85957681	rs11200915	A	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	85965819	rs10788335	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.515;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	85974381	rs3814212	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:171,71:0.29:242
chr10	85991631	rs41314473	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.928;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr10	85992478	rs3814210	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:236,105:0.31:341
chr10	85992511	rs3814209	T	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:230,113:0.33:343
chr10	85993836	rs4933986	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	85993910	rs3814206	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr10	85994142	rs3829858	A	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:144,59:0.29:203
chr10	85996968	rs4933988	A	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.258;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr10	85997250	rs10887259	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr10	85997508	rs74145777	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr10	86001255	rs3841414	G	GGCCCAGCAA	700.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	86004736	rs2279228	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	86004865	rs11200938	C	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.504;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:37,48:0.56:85
chr10	86004873	rs2279227	T	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.23;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	86012713	rs1042454	C	T	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	86012831	rs11200942	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr10	86018460	rs3526	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	86185654	rs1336202	T	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	87362579	rs60453921	T	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr10	87379811	rs2292310	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,32:0.30:107
chr10	87487603	rs74148737	G	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr10	87487930	rs12221324	C	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	87489238	rs4130360	A	G	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:58,145:0.71:203
chr10	87489242	rs3812647	C	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:148,61:0.29:209
chr10	87489288	rs3812646	A	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.579;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:139,59:0.30:198
chr10	87489317	rs3812645	TG	CC	1619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.645;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.470;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:116,46:0.28:162
chr10	87966028	rs56757884	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	88024443	rs2607863	T	C	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	88024553	rs10887569	C	T	7528.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:156,349:0.69:505
chr10	88024618	rs144378787	C	A	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.494;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:357,167:0.32:524
chr10	88123671	rs116536584	T	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr10	88123951	rs7089364	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr10	88125921	rs10887587	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr10	88126056	rs11202000	T	G	9725.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.68;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	88126072	rs61856638	G	A	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.666;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:235,102:0.30:337
chr10	88203068	rs7094132	T	C	8184.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr10	88203208	rs7094269	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	88213604	rs6586011	A	G	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:29,88:0.75:117
chr10	88220097	rs147571778	TACAC	T	2913.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr10	88220866	rs7922658	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	88230874	rs2288362	G	A	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	88232081	rs33917114	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr10	88256943	rs4934215	C	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	88277479	rs34053295	A	G	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:237,150:0.39:387
chr10	88281346	rs4934218	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr10	88419012	rs3740334	T	C	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:42,85:0.67:127
chr10	88419641	rs3740335	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr10	88422116	rs1079610	C	T	5224.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:144,250:0.63:394
chr10	88426594	.	G	T	1782.77	.	AC=1;AF=0.500;AN=2;DP=318;set=Intersection	GT:AD:AF:DP	0/1:205,108:0.35:313
chr10	88426614	rs34106786	TC	T	3919.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:86,144:0.63:230
chr10	88428335	rs2803558	T	C	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:110,159:0.59:269
chr10	88445385	rs3740345	G	C	9068.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	88458996	rs139252694	TTCTCTC	T,TTC	4041.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=147;set=Intersection	GT:AF:DP	1/2:0.58,0.41:113
chr10	88486102	rs34647099	CT	C	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:45,76:0.63:121
chr10	88492235	rs7916248	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	88492253	rs71487280	CTGTTTGTT	C	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr10	88492349	rs59412880	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr10	88492362	rs7899324	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr10	88492409	rs7899337	G	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	88635751	rs116346662	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	88635779	rs11528010	C	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	88679356	rs56183521	TG	T	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	88683122	rs7074064	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.618;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr10	88702350	rs4934281	G	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	88717140	rs4244973	T	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	88717154	rs3750823	C	T	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,5:0.15:34
chr10	88718436	rs1800373	A	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	88722209	rs73353640	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr10	88722226	rs73334929	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr10	88722666	rs73334931	G	A	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:68,137:0.67:205
chr10	88728167	rs7922458	C	A	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:62,132:0.68:194
chr10	88730177	rs2279601	A	G	10950.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.263;QD=13.99;ReadPosRankSum=1.868;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:282,501:0.64:783
chr10	88730177	.	AG	GT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=60.06;NF=139;NR=122;PP=2944;QD=20;SC=CTAAGCCTACAGGCACTGTGG;SbPval=0.55;Source=Platypus;TC=420;TCF=224;TCR=196;TR=261;WE=88730200;WS=88730167;set=Platypus	GT:AD:AF:DP	0/1:159,261:0.62:420
chr10	88730178	rs114826427	G	T	20087.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.253;QD=25.79;ReadPosRankSum=2.014;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:279,500:0.64:779
chr10	88730192	rs149097397	C	CG	14053.73	.	AC=1;AF=0.500;AN=2;DB;DP=794;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:266,493:0.65:759
chr10	88730312	rs4869	T	C	9842.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:233,466:0.67:699
chr10	88730409	rs74503710	C	T	10330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.56;ReadPosRankSum=0.486;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:125,264:0.68:389
chr10	88730419	rs111880726	C	G	10669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-1.669;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:128,276:0.68:404
chr10	88730564	rs73334941	A	T	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:82,153:0.65:235
chr10	88768253	rs2641563	A	G	18646.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:1,737:1.00:738
chr10	88768657	rs1745901	C	T	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr10	88817578	rs35186250	GA	G	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.733;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	88819133	rs2296062	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr10	88834244	.	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.503;QD=1.70;ReadPosRankSum=-0.123;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	88930249	rs11202365	A	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:149,57:0.28:206
chr10	88935590	rs11202370	C	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	88939962	rs7081609	T	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	88973817	rs28668119	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr10	88975783	rs28533204	C	T	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:159,239:0.60:398
chr10	89267957	rs3843597	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.449;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr10	89269267	rs3843598	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	89419638	.	C	CGCT,CGCTGCTGCT	1934.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=197;set=Intersection	GT:AF:DP	1/2:0.27,0.53:171
chr10	89419662	.	T	TGCTGCTGCC	2989	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=28;MQ=59.77;NF=18;NR=35;PP=2989;QD=20;SC=CTGCTGCTGCTGCCGCCGCCG;SbPval=0.41;Source=Platypus;TC=100;TCF=31;TCR=69;TR=53;WE=89419670;WS=89419652;set=Platypus	GT:AD:AF:DP	0/1:47,53:0.53:100
chr10	89419873	rs2255682	C	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,24:0.28:87
chr10	89420789	rs2762528	A	G	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	89420898	rs112752254	TA	T	254.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr10	89463460	rs7923151	G	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	89463480	rs7923162	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chr10	89469083	rs72025574	CATAT	C	501.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr10	89475640	rs3214322	GA	G	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.356;QD=3.08;ReadPosRankSum=-0.682;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr10	89475692	rs2302406	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=0.732;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr10	89475717	rs2302407	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=-0.598;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	89527300	rs1819163	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.13;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	89552283	rs11202557	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr10	89653686	rs1903858	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	89690952	rs1799734	T	TTTATC	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	89720907	rs555895	T	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	90034883	rs72818071	C	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.201;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:188,66:0.26:254
chr10	90034899	rs45585838	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.675;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:146,56:0.28:202
chr10	90034982	rs112956101	AT	A	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr10	90074140	rs11202710	G	A	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.042;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr10	90074145	rs11202711	A	G	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.997;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr10	90305177	rs11202769	C	T	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	90342837	rs2296545	C	G	15749.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr10	90356598	rs1409136	A	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	90365290	rs2274312	A	G	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	90425494	.	ATTTTTTT	A	102.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.54;ReadPosRankSum=-2.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	90484243	rs376036	C	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	90484420	rs56390975	C	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	90484422	rs11358016	GA	G	2989.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	90486793	rs407433	T	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	90490728	rs392430	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	90490921	rs412227	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:95,28:0.23:123
chr10	90492356	rs11202833	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	90497588	rs444764	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr10	90497655	rs405147	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr10	90499608	rs403572	A	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	90499894	rs443886	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr10	90499928	rs419014	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr10	90503075	rs390152	T	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.300;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr10	90522182	rs843782	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.338;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=9.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.808;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	90524237	rs430517	T	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:147,91:0.38:238
chr10	90524412	rs398126	A	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr10	90524456	rs7912222	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr10	90528499	rs450011	C	T	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	90534085	rs303470	A	T	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	90534698	rs303471	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	90534787	rs303472	T	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	90535040	rs303473	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	90537732	rs303484	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,86:0.72:120
chr10	90538020	rs303485	A	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	90565671	rs303534	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.644;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	90565864	rs303533	T	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr10	90583092	rs2304804	T	G	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:44,124:0.74:168
chr10	90588154	rs1977537	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.26;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	90588160	rs114807603	GC	AT	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.348;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	90674434	rs143062007	A	AAT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.109;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr10	90676671	rs74930864	T	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr10	90683124	rs1530281	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	90695243	rs3781212	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr10	90703465	rs41284112	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.15;ReadPosRankSum=-0.460;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	90703524	rs12242191	C	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	90750600	rs5030766	A	G	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:53,140:0.73:193
chr10	90767395	rs2031611	G	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	90770439	rs2296600	C	G	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	90771829	rs2234978	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr10	90773303	rs1571019	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	90822940	rs61852650	G	A	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr10	90975649	rs3802656	G	A	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.046;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:118,82:0.41:200
chr10	90985067	rs72163486	CGCCCTCTCGCGGA	C	501.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,17:0.25:69
chr10	90988250	rs2071509	C	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	91005713	rs3740044	G	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	91007339	rs1051339	C	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:76,114:0.60:190
chr10	91007470	rs2250781	C	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	91066075	rs2070845	A	G	7453.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	91066460	rs954439	T	A	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	91066769	rs1727	C	A	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	91092189	rs12255504	C	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	91098850	rs150635335	A	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:159,64:0.29:223
chr10	91099630	rs3780878	T	C	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	91099943	rs10749607	C	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	91137826	rs304504	T	C	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr10	91143529	rs304494	T	A	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	91143633	rs7072728	T	C	5263.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:139,255:0.65:394
chr10	91162497	rs303211	A	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	91172663	rs304439	C	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=25.18;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	91178000	rs304448	C	T	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr10	91178468	rs41284948	T	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr10	91196202	rs2297312	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr10	91203709	rs75084000	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr10	91203730	rs77348497	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	91344169	rs1063943	G	A	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:234,120:0.34:354
chr10	91352750	rs111642895	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	91352850	rs10160034	C	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.076;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:72,34:0.32:106
chr10	91352966	rs2296616	G	A	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	91358943	rs62620049	C	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-1.666;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr10	91404729	rs114133850	C	T	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:323,146:0.31:469
chr10	91404832	rs12769113	T	C	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:136,236:0.63:372
chr10	91464980	.	CT	C	277.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr10	91464986	.	A	G	301.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	91469576	rs10881631	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=-0.253;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	91469864	rs143233819	A	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	91470660	rs7089473	T	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	91470834	rs1048057	A	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr10	91473887	rs11185853	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr10	91473975	rs11185854	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=2.223;QD=13.88;ReadPosRankSum=-1.409;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr10	91474686	rs373004927	GT	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-1.117;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	91479180	rs141485845	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.386;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr10	91483908	rs7079174	G	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr10	91484780	rs8181361	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr10	91485950	rs10881639	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=1.000;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	91497631	rs1062465	T	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr10	91497902	rs144593231	C	CTAAAAG	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr10	91498127	rs1886996	T	C	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.176;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr10	91498254	rs1886997	A	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr10	91498318	rs1886998	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=2.104;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr10	91503660	rs1126480	A	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr10	91503750	rs10881648	G	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr10	91510982	rs1326201	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	91511042	rs139549652	TTAAGAAAAATTGGA	T	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr10	91518388	rs2026549	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	91522605	rs3740038	G	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:40,81:0.67:121
chr10	91528441	rs3824609	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr10	91532432	rs3758389	A	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	92508658	rs10159742	T	C	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,124:0.64:195
chr10	92631683	rs76932382	C	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:184,79:0.30:263
chr10	92631729	rs112371911	T	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:267,120:0.31:387
chr10	92631908	rs111801196	G	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:265,119:0.31:384
chr10	92635211	rs149175620	T	TA	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	92635436	rs113124007	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr10	92638707	rs75192201	C	CAGT	454.37	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:0,11:1.00:11
chr10	92638904	rs113145555	T	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=0.367;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr10	92645515	rs138882299	TCTTA	T	1090.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:123,36:0.23:159
chr10	92645687	rs4144422	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr10	92655338	rs59891149	A	AT	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	92655559	rs10881848	T	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	92662860	rs4568910	A	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	92663108	rs7089472	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	92675857	rs150275749	G	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-1.618;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr10	92676187	rs112074175	ATG	A	944.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;QD=30.48;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	92678748	rs369346626	AAT	A	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.854;QD=4.00;ReadPosRankSum=1.089;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr10	92680929	rs10881855	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr10	93000211	rs10881907	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	93170250	rs7081569	C	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	93170365	rs71025355	CG	C	1547.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	93220104	rs11186575	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr10	93221077	rs7920604	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	93222023	rs9664423	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	93240704	rs7898845	A	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	93256193	rs138762222	GTCTC	G	1407.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr10	93271982	rs12245101	T	A	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:66,112:0.63:178
chr10	93577141	rs1539041	T	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	93579003	rs34501124	C	CT	508.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-0.871;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr10	93579117	.	C	CT	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-0.872;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr10	93588201	rs1572933	G	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.68;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	93588208	rs1572934	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.62;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	93610896	rs3758501	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr10	93611176	rs112177544	A	ATATG	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	93615311	rs11186714	C	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	93617306	rs1340420	A	G	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:3,313:0.99:316
chr10	93716899	rs7894570	G	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	93719497	rs10581040	GTATATATA	G	226.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	93719531	rs116422242	T	C	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.26;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	93749103	rs74490737	T	C	2799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-1.443;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:54,130:0.71:184
chr10	93768094	rs113804327	T	TG	587.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=25.55;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	93770768	rs7916942	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	93770957	rs7900567	C	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	93773817	rs11819183	G	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	93776257	rs77363627	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	93784489	rs71886015	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.806;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	93812295	rs74149359	A	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr10	93812334	rs1711841	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	93841227	rs2676811	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	93851714	rs1229578	T	C	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	93870699	rs1557178	C	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	93904826	rs57843901	A	G	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=1.990;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:98,50:0.34:148
chr10	93999850	rs3824734	A	G	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	94221122	rs7098739	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=0.180;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	94234737	rs56035419	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.899;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr10	94238929	rs35864975	T	TA	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr10	94266330	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.086;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr10	94268347	rs147883643	AACAACC	A	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	94274877	rs149220434	T	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr10	94366347	rs11393423	A	AT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.788;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr10	94366835	rs12244809	G	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr10	94366898	rs12259474	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr10	94367033	rs17107758	A	G	170.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.53;ReadPosRankSum=-0.230;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	94369023	.	CAGAGAGAGAGAG	C	707	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=26;MQ=56.24;NF=3;NR=3;PP=707;QD=118.333333333;SC=TTTGAGAAGTCAGAGAGAGAG;SbPval=0.43;Source=Platypus;TC=13;TCF=5;TCR=8;TR=6;WE=94369042;WS=94369013;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	94369056	.	AGAGAGTGTGTGTGTGT	A	74	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=27;MQ=55.11;NF=3;NR=4;PP=74;QD=11.0;SC=AGAGAGAGAGAGAGAGTGTGT;SbPval=0.72;Source=Platypus;TC=15;TCF=7;TCR=8;TR=7;WE=94369079;WS=94369046;set=Platypus	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	94369060	.	AGTGTGTGTGT	A	902	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=33;MMLQ=25;MQ=55.72;NF=2;NR=4;PP=902;QD=150.833333333;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.73;Source=Platypus;TC=13;TCF=5;TCR=8;TR=6;WE=94369077;WS=94369058;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	94376621	rs144328956	CTTG	C	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	94392459	rs17107764	A	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr10	94392513	rs113828479	A	ATAATT	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	94407865	rs34357393	CA	C	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:4,36:0.90:40
chr10	94409800	rs6583833	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	94490174	rs2488075	T	C	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:84,131:0.61:215
chr10	94490284	.	T	TTCCTCC	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=31.41;ReadPosRankSum=-0.449;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	94507590	rs11816075	G	T	6323.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:155,297:0.66:452
chr10	94507612	rs2488066	A	G	20717.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:2,595:1.00:597
chr10	94511683	rs2096177	G	T	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:289,179:0.38:468
chr10	94594416	rs11408607	A	AT	1278.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.207;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=-1.532;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:9,71:0.89:80
chr10	94594565	rs2490741	G	A	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	94695555	rs1326330	G	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	94695617	rs1326331	C	T	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	94708181	rs201011974	C	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	94757106	rs73317384	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	94822756	rs58993699	C	T	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	94833890	rs35630863	G	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr10	94835071	rs80188100	AG	GA	9702.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr10	95070037	rs2761286	A	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	95070080	rs2797581	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	95070526	rs787661	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	95072906	rs787666	T	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	95073046	rs787667	A	G	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	95083204	rs148815470	ATTTC	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	95097537	rs1614065	T	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:189,108:0.36:297
chr10	95123618	rs10882221	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr10	95129364	rs74432867	G	C	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.542;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=2.716;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:102,73:0.42:175
chr10	95129593	rs60304154	A	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr10	95132905	rs787647	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr10	95139526	rs10882229	A	G	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	95152804	rs73319677	T	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	95152853	rs74845219	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr10	95159025	rs701862	T	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	95159115	rs78464761	A	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr10	95162113	rs2272177	G	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr10	95163883	rs56041929	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:60,93:0.61:153
chr10	95164040	rs788088	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	95259979	rs3740370	C	G	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.720;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:164,62:0.27:226
chr10	95259983	rs62618732	C	T	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.814;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:158,63:0.29:221
chr10	95260023	rs74150247	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:119,38:0.24:157
chr10	95262981	rs7080916	A	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,241:0.99:243
chr10	95276673	rs4919224	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	95276718	rs7072484	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-1.508;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr10	95278829	rs2280605	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr10	95278841	rs2280606	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr10	95279599	rs74150252	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.123;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr10	95279653	rs7068719	A	G	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	95326676	rs61866610	C	T	8842.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:179,396:0.69:575
chr10	95381674	rs141403797	G	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:26,82:0.76:108
chr10	95381773	rs701865	T	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:289,123:0.30:412
chr10	95388891	rs57732332	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr10	95388914	rs2857300	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:123,45:0.27:168
chr10	95389041	rs714550	G	A	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.629;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:201,85:0.30:286
chr10	95389083	rs714549	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr10	95389124	rs714551	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr10	95394455	rs1856563	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	95395247	rs616522	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	95400054	rs2275227	C	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	95400510	rs12780304	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	95405665	rs3831275	CTA	C	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	95405814	rs1409332	C	A	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:202,91:0.31:293
chr10	95431668	.	A	G	141	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=4;MGOF=2;MMLQ=21;MQ=60.0;NF=3;NR=0;PP=141;QD=58.5904041824;SC=TTACCTTCAAAATCAGTAAAA;SbPval=1.0;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=95431676;WS=95431657;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	95549836	rs368174638	C	CTT	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.833;QD=7.78;ReadPosRankSum=-1.418;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr10	95549970	rs12262635	A	T	721.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=1.377;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr10	95549971	rs12248097	G	C	721.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.181;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=1.049;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr10	95550026	rs12255855	T	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.82;ReadPosRankSum=-0.712;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	95552653	rs1111820	T	C	5109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.386;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:121,247:0.67:368
chr10	95552925	rs1108877	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr10	95718421	rs369509654	C	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.975;QD=5.43;ReadPosRankSum=-0.556;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr10	95718474	rs829225	A	G	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.69;QD=26.79;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr10	95718600	rs11815169	T	C	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:254,131:0.34:385
chr10	95718949	rs11813252	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr10	95791613	rs17109671	T	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	95791763	rs17109674	G	A	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:77,154:0.67:231
chr10	95931087	rs17417407	G	T	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:100,158:0.61:258
chr10	95987313	rs11187825	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.328;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	96066230	rs58539480	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:241,99:0.29:340
chr10	96066341	rs2274223	A	G	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:189,112:0.37:301
chr10	96075291	rs140442339	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.663;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr10	96084122	rs111929795	A	G	3859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=1.242;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:81,180:0.69:261
chr10	96094425	rs74708758	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:68,18:0.21:86
chr10	96100119	rs3740359	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr10	96100370	rs201917172	G	GC	51.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr10	96104086	rs17439123	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.919;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	96104304	rs140671214	G	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr10	96104665	rs3758526	T	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,115:0.60:192
chr10	96109325	rs7085378	C	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	96114835	rs12572897	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr10	96116958	rs76633367	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,34:0.29:118
chr10	96122543	rs7100430	A	G	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:159,89:0.36:248
chr10	96163039	rs2477534	C	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr10	96201839	rs10584329	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.551;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr10	96271298	rs2860761	A	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	96343623	rs962234	T	C	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	96708974	rs2256871	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	96796796	rs28399518	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.566;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	96802598	rs2275620	A	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	96827119	rs11572078	T	TA	1507.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr10	96827178	rs2275622	T	C	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	96954298	rs591157	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr10	96954473	rs592041	A	T	2373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=0.906;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:26,63:0.71:89
chr10	96954479	rs592055	G	A	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.87;ReadPosRankSum=1.256;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:24,56:0.70:80
chr10	96954511	rs681838	T	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	96961184	rs602941	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr10	96966954	rs58102963	GT	G	2054.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:75,111:0.60:186
chr10	96970361	rs16872	A	C	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:138,203:0.60:341
chr10	96974518	rs595478	A	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr10	96974552	rs595420	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr10	96974803	rs594448	A	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr10	96985198	rs489807	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr10	96997589	rs1049961	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr10	96997670	rs1049921	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:157,84:0.35:241
chr10	96997820	rs1049814	A	G	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.222;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:112,52:0.32:164
chr10	96998519	rs2860998	T	C	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-2.820;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:117,73:0.38:190
chr10	96998591	rs2901833	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr10	96998625	rs12778613	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	96998648	rs2860999	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr10	97023541	rs4918908	C	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-1.650;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr10	97023552	rs4917682	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	97023630	rs2296961	T	C	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.663;QD=15.47;ReadPosRankSum=-0.582;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:38,91:0.71:129
chr10	97023895	rs2296962	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	97110879	rs6583995	C	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	97116085	rs74546941	T	C	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:154,81:0.34:235
chr10	97116219	rs7076888	C	T	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:115,213:0.65:328
chr10	97116584	rs116136934	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr10	97127264	rs6583997	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	97127462	rs6583998	C	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	97127577	rs7074224	C	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	97137105	rs1536556	A	G	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	97141523	rs2274490	G	A	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	97144032	rs73319274	T	C	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:232,133:0.36:365
chr10	97144149	rs73319275	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:211,105:0.33:316
chr10	97154682	rs55688714	A	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr10	97154698	rs11188311	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr10	97156908	rs17110707	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:267,109:0.29:376
chr10	97165811	rs3818540	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	97166103	rs2274488	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	97192324	rs943542	A	G	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	97192452	rs732101	A	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	97369939	rs10882640	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.095;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:212,66:0.24:278
chr10	97371146	rs1804934	G	A	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,102:0.65:156
chr10	97371317	rs11188399	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr10	97371344	rs112143949	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr10	97373966	rs2296692	A	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr10	97385014	rs57670810	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr10	97388162	rs2275272	G	A	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.949;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:222,86:0.28:308
chr10	97412921	rs9787589	T	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=2.281;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr10	97440159	rs11595248	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.277;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr10	97440394	rs12784530	T	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=1.712;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr10	97602091	rs3181131	T	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr10	97604406	rs3176886	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.129;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr10	97604503	rs3176885	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr10	97605057	rs7074403	C	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr10	97681714	rs11594853	T	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-1.786;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr10	97698338	rs35298116	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.389;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr10	97698370	rs4918979	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:17,63:0.79:80
chr10	97748040	rs7900838	G	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	97769856	rs4145209	G	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr10	97772358	rs17383738	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.840;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr10	97779219	rs1414921	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	97784555	rs139337041	C	CT	3851.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:68,122:0.64:190
chr10	97786973	rs111687262	G	A	2792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.476;QD=12.69;ReadPosRankSum=-0.347;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:84,136:0.62:220
chr10	97816420	rs7099399	G	A	6808.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:205,325:0.61:530
chr10	97817547	rs112770290	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr10	97817920	rs113035713	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:44,85:0.66:129
chr10	97920099	rs67530050	T	TC	13142.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr10	97964154	rs10748665	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.73;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	97964154	.	CGTA	TGTA,TGTG	155	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=103;MMLQ=26;MQ=60.0;NF=13,7;NR=4,2;PP=57,155;QD=5.39830662042;SC=CCTTTTAACACGTAACTGCAA;SbPval=0.59;Source=Platypus;TC=17;TCF=13;TCR=4;TR=17,9;WE=97964165;WS=97964144;set=Platypus	GT:AF:DP	0/1:1.00:17
chr10	97964157	rs2242137	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-1.047;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr10	97975167	rs3835127	GTA	G	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr10	97987378	rs34233512	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:147,96:0.40:243
chr10	97990583	rs727852	A	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:144,83:0.37:227
chr10	98006857	rs2168732	A	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.87;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	98007727	rs10882762	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	98007933	rs9663433	G	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	98007943	rs9664029	T	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	98078127	rs7081385	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	98078239	rs6584066	A	G	7625.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	98082517	rs7097016	T	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	98084231	rs2181320	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr10	98092034	rs59794161	A	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr10	98095794	rs10736102	T	C	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr10	98095838	rs17111707	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr10	98105673	rs3841416	TCTG	T	3881.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,98:0.66:149
chr10	98113272	rs12572329	A	G	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:110,213:0.66:323
chr10	98116315	rs138999979	A	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr10	98127809	rs41291624	A	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr10	98144312	rs7085022	G	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	98146804	rs17111767	G	A	8497.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:208,403:0.66:611
chr10	98165176	rs7077161	G	A	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr10	98170462	rs114793372	A	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.335;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr10	98180613	rs3789951	A	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	98180958	rs3789954	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	98240035	rs2281801	A	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.96;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	98240035	.	ACCACATCTCC	TCCACATCTCC,TCCACATCTCT	291	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.45;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=18,10;NR=5,2;PP=148,291;QD=7.94657445857;SC=TGACTCGTGGACCACATCTCC;SbPval=0.56;Source=Platypus;TC=23;TCF=18;TCR=5;TR=23,12;WE=98240053;WS=98240025;set=Platypus	GT:AF:DP	0/1:1.00:23
chr10	98240045	rs2281800	C	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-1.315;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr10	98240382	rs243	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	98273202	rs201949422	TG	T	4617.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:76,117:0.61:193
chr10	98273208	rs115652631	C	A	4685.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:88,120:0.58:208
chr10	98273390	.	GGCA	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.553;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:41,5:0.11:46
chr10	98282160	rs17391197	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.627;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr10	98287094	rs10786298	T	A	533.96	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,23:0.92:25
chr10	98287150	rs3789958	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr10	98287792	rs12779720	G	T	4547.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:100,208:0.68:308
chr10	98311190	rs10882816	G	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,58:0.43:136
chr10	98312891	rs10736113	C	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr10	98321928	rs7094142	A	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	98336341	rs61858555	C	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr10	98346411	rs11188836	A	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	98346636	rs199747093	TC	T	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	98346649	rs1062176	T	G	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr10	98369536	rs3748236	A	G	3202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.998;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:78,156:0.67:234
chr10	98383329	rs4917745	G	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	98386433	rs1469847	C	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	98386558	rs4344416	G	A	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	98408714	rs912483	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr10	98410901	rs3748232	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr10	98412329	.	C	CA	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.080;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.008;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:37,33:0.47:70
chr10	98469507	rs3748229	C	A	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:95,152:0.62:247
chr10	98740874	rs114538392	G	A	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:287,123:0.30:410
chr10	98742334	rs35128733	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.705;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:107,40:0.27:147
chr10	98742348	rs34104025	C	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.491;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr10	98742605	rs3814163	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.625;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:164,72:0.31:236
chr10	98742813	rs7894200	A	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:143,56:0.28:199
chr10	98743376	rs36096056	T	C	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:91,168:0.65:259
chr10	98764694	rs7922903	G	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr10	98773918	rs116028202	G	T	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:158,263:0.62:421
chr10	98778568	rs74153745	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr10	98778574	.	CTTCATTCA	C	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.492;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr10	98778941	rs57812299	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr10	98780968	rs74153747	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:34,77:0.69:111
chr10	98790674	rs41284248	G	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr10	98797250	rs73320630	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr10	98797351	rs2805586	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	98797360	rs75066754	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.177;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr10	98816786	rs2817675	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	98825705	rs11591341	C	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr10	98825940	rs1106375	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr10	98923361	rs2636772	T	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	98978992	rs150890483	TTTATTA	T	772.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr10	98979111	.	AT	A	53	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=5;HapScore=2;MGOF=19;MMLQ=24;MQ=60.0;NF=2;NR=4;PP=53;QD=14.0;SC=TTATATGTGGATTTTTCGACT;SbPval=0.4;Source=Platypus;TC=9;TCF=2;TCR=7;TR=6;WE=98979119;WS=98979101;set=Platypus	GT:AD:AF:DP	1/0:3,6:0.67:9
chr10	98988759	rs1468069	A	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr10	98989454	rs2297987	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.416;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr10	99019144	rs3740522	C	T	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.671;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:228,91:0.29:319
chr10	99019177	rs2253301	A	G	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.818;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:239,109:0.31:348
chr10	99025611	rs10882884	T	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr10	99079023	rs11189127	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	99094436	rs1890966	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr10	99116903	rs1048445	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:162,80:0.33:242
chr10	99117097	rs7923385	T	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr10	99118382	rs2297988	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:132,95:0.42:227
chr10	99123457	rs11189165	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr10	99125722	rs11189167	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr10	99125769	rs11189168	T	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr10	99125788	rs10882907	G	C	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:116,68:0.37:184
chr10	99126249	rs2275581	G	A	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.522;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:296,124:0.30:420
chr10	99130127	rs3737194	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:120,48:0.29:168
chr10	99139600	rs11189174	C	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.65;ReadPosRankSum=0.305;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	99140511	rs7078004	A	G	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:263,118:0.31:381
chr10	99140969	rs7096801	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr10	99141205	rs2275089	A	G	2323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-2.155;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:253,137:0.35:390
chr10	99141484	rs12218483	C	T	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.908;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:309,152:0.33:461
chr10	99141663	rs11189177	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.919;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr10	99144832	.	CCCCCCACCTCGGCAGCCTGGACACAGGCCCTGAGCA	C	209.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr10	99145179	rs3818787	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.242;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	99147975	rs869967	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr10	99148151	rs2275090	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:259,91:0.26:350
chr10	99153540	rs7898743	T	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr10	99155984	rs3814553	G	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:267,108:0.29:375
chr10	99156273	rs11189200	C	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	99160046	rs2297668	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:112,76:0.40:188
chr10	99160152	rs1048442	A	G	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:385,182:0.32:567
chr10	99160965	rs2275091	A	G	2597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-2.171;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:414,165:0.28:579
chr10	99215953	rs3818909	G	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr10	99216432	rs10882939	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr10	99219404	rs29001331	TG	T	2562.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:156,84:0.35:240
chr10	99219885	rs2152092	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:200,92:0.32:292
chr10	99229394	rs2275583	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr10	99240048	rs7897727	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr10	99240758	rs2275586	G	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.344;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr10	99258223	rs3750558	T	G	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	99332488	rs12221474	A	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-2.877;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	99337459	rs73332750	C	T	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr10	99337473	rs10786357	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	99341185	rs2275588	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr10	99342211	rs73332757	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr10	99350017	rs7093840	G	C	5913.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:147,278:0.65:425
chr10	99350128	rs7093643	A	G	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:63,129:0.67:192
chr10	99361563	rs79084430	T	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.243;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	99361599	rs143018385	T	TCTTA	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	99371147	rs1124116	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr10	99371159	rs192829433	G	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr10	99376092	rs3814555	T	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	99376152	rs3814556	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	99376843	rs4919121	A	C	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	99393234	rs11189303	G	A	4749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.369;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:482,272:0.36:754
chr10	99400646	rs7909659	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr10	99410790	rs7915721	T	C	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	99416303	rs1889475	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	99422648	rs7905087	A	G	12551.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.56;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr10	99424595	rs78776357	T	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr10	99426415	rs3750562	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	99426975	rs4254004	C	T	300.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=2.090;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr10	99437822	rs3750564	A	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	99439541	rs2275047	G	C	11822.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr10	99439688	rs2151930	A	G	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	99439703	rs11595249	A	T	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	99439724	rs2151931	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	99473666	rs11189342	C	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	99498313	rs34979921	C	G	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:72,95:0.57:167
chr10	99504630	rs10882993	G	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr10	99504725	rs10882994	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr10	99504780	rs12243235	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.13;ReadPosRankSum=-0.674;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	99504780	.	AC	GT	61	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=0.9999;HP=2;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=61;QD=57.2339374311;SC=CACAGCTGTTACTTCATTTAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=99504789;WS=99504770;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr10	99507869	rs11189352	T	C	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	99508014	rs12264401	C	T	3157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.193;ClippingRankSum=0.000;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.144;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:558,209:0.27:767
chr10	99509457	rs946778	T	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.374;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr10	99509969	rs3750615	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	99512491	rs12263460	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.011;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr10	99512569	rs140471423	T	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr10	99517355	rs3750612	A	G	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:114,204:0.64:318
chr10	99518831	rs149519321	A	AT	1351.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr10	99519097	rs1981237	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.606;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr10	99527573	rs35379499	G	A	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:65,187:0.74:252
chr10	99527653	rs12254497	G	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:88,59:0.40:147
chr10	99531570	.	C	CG	214.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.376;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	99531571	rs11815012	C	G,CCG	671.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.99;SOR=1.828;set=HC	GT:AD:AF:DP	1/2:0,14,7:0.67,0.33:21
chr10	99623882	rs76788477	G	T	5831.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:143,270:0.65:413
chr10	99642731	rs588061	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr10	99682981	rs894375	T	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr10	99683270	rs2289554	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:33,79:0.71:112
chr10	99789989	rs150253337	C	T	106.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.76;ReadPosRankSum=-0.431;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr10	99991408	rs1952061	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	100003785	rs1359508	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	100011970	rs3750598	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	100012011	rs10748722	C	T	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	100013244	rs3750599	A	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	100020880	rs33995374	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:170,96:0.36:266
chr10	100021983	rs746257	G	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:185,106:0.36:291
chr10	100022446	rs10736125	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	100022917	rs112780536	A	ATG	544.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;MQRankSum=0.817;QD=27.24;ReadPosRankSum=1.705;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	100146895	rs2296438	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr10	100147060	rs4345897	A	G	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:62,95:0.61:157
chr10	100147097	rs4400721	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:61,98:0.62:159
chr10	100147247	rs7908390	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	100148004	rs2182169	T	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr10	100148058	rs4539242	T	C	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	100148176	rs2147896	A	G	11427.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	100148308	rs2147895	T	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr10	100148353	rs2182168	C	G	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr10	100152373	rs6584192	T	G	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:82,168:0.67:250
chr10	100155296	rs11189591	T	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr10	100157329	rs61159293	AC	A	2146.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:49,85:0.63:134
chr10	100157368	rs10786418	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr10	100167236	rs10883090	G	C	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.643;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr10	100167239	rs10883091	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.503;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.084;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr10	100167276	rs10883092	A	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.464;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:106,42:0.28:148
chr10	100167396	rs12763326	G	A	6232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=0.727;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:604,224:0.27:828
chr10	100167436	rs45523432	T	C	4995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.587;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:527,156:0.23:683
chr10	100167451	rs12763044	C	G	4297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-3.680;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:431,126:0.23:557
chr10	100167466	rs12763379	G	A	2886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-5.436;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:331,93:0.22:424
chr10	100167493	.	CCGT	C	1899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=6.698;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.742;QD=6.03;ReadPosRankSum=-5.201;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:248,67:0.21:315
chr10	100167498	.	ACCAGGGGTCAGCAGGGATGGAGACCGTCACCCGGGGTCAGCAGGGATGGAGACCG	A	1625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.806;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.691;QD=4.75;ReadPosRankSum=-5.183;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:277,65:0.19:342
chr10	100167605	.	G	A	873	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=47;MMLQ=27;MQ=59.62;NF=35;NR=27;PP=873;QD=14.6414711701;SC=AGCAGGGATGGAGACTGTCAC;SbPval=0.52;Source=Platypus;TC=216;TCF=124;TCR=92;TR=62;WE=100167613;WS=100167595;set=Platypus	GT:AD:AF:DP	1/0:154,62:0.29:216
chr10	100167860	rs942810	G	C	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	100167906	rs11289323	TG	T	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr10	100167909	.	G	C	1146.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr10	100167951	rs17109675	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr10	100170507	rs7896828	A	T	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	100170762	rs3814140	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr10	100174721	rs2147900	T	C	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:302,169:0.36:471
chr10	100179851	rs2296436	T	C	7593.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:160,364:0.69:524
chr10	100183570	rs2296434	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:66,96:0.59:162
chr10	100183774	rs10883093	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	100185250	rs41317034	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	100189242	rs34533614	G	A	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=1.747;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:61,112:0.65:173
chr10	100189252	rs1061134	G	A	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.00;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	100189636	rs56378825	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,63:0.32:198
chr10	100190264	rs2296431	T	C	8515.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	100193679	rs1886728	G	C	3406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.747;QD=5.58;ReadPosRankSum=0.855;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:407,203:0.33:610
chr10	100195383	rs78927693	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr10	100195583	rs2296430	T	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=3.094;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr10	100202987	rs58548334	A	G	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:211,297:0.58:508
chr10	100219314	rs10883099	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,60:0.39:154
chr10	100219374	rs10883100	T	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:156,77:0.33:233
chr10	100219519	rs11189618	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr10	100242345	rs1932800	C	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr10	100250019	rs59184373	GACACACACAC	G,GACAC	1322.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/1:0.91:33
chr10	100250052	rs75853200	G	T	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.57;ReadPosRankSum=0.604;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr10	100401745	rs693656	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=9.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=3.514;SOR=2.891;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr10	100481315	rs147098746	A	AAAAT	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	100481427	rs17110744	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr10	100991971	.	TACACAC	T	660.50	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.02;ReadPosRankSum=0.801;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	100991978	.	A	G	660.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=1.088;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr10	100991981	.	C	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=0.951;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr10	101090428	rs2862600	T	G	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	101120787	rs3763792	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr10	101124157	.	C	CT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.052;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr10	101293035	rs41290504	C	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:257,107:0.29:364
chr10	101372411	rs880568	T	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	101373779	rs376744767	CTG	C	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	101379795	rs12252561	G	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr10	101420283	.	G	GCA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.253;QD=24.68;ReadPosRankSum=1.282;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	101420318	rs28529459	C	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	101421367	rs61729539	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr10	101439252	rs3740079	G	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	101445591	rs3740078	A	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.927;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:157,56:0.26:213
chr10	101451353	rs76728867	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr10	101462193	rs10748790	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	101473147	rs149696723	A	G	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.560;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:109,66:0.38:175
chr10	101473218	rs2231687	A	G	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	101480549	rs56288771	T	TG	142.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr10	101480550	rs3740077	T	G	151.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr10	101480604	rs3832650	C	CAG	2133.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	101483617	rs144884981	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	101486759	rs35483721	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr10	101492241	rs2231675	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr10	101544447	rs927344	A	T	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	101551902	rs2756108	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	101554331	.	TG	T	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.306;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr10	101556824	rs17222751	G	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr10	101559158	rs111312853	A	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.033;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:95,45:0.32:140
chr10	101560106	rs79174032	C	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:145,63:0.30:208
chr10	101563815	rs2273697	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:49,112:0.70:161
chr10	101571528	rs3740074	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr10	101576960	rs3740073	T	C	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	101579082	rs77153111	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr10	101591944	rs4148396	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	101606683	rs3740064	G	A	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:51,78:0.60:129
chr10	101637161	rs2256276	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	101639796	rs2255901	G	A	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	101643675	rs144327645	G	GT	1415.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	101643676	rs78615379	C	T	1491.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	101645498	rs2490763	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	101654696	rs3758394	T	C	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:93,186:0.67:279
chr10	101658585	rs3740057	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:39,92:0.70:131
chr10	101689378	rs7077718	G	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	101689390	rs191573123	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr10	101690050	rs10786578	C	T	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr10	101690415	rs11190326	G	A	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:110,189:0.63:299
chr10	101690637	rs7085955	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.15;ReadPosRankSum=0.605;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	101715899	rs2862923	G	A	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	101731631	rs11593499	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr10	101808694	.	G	C	28	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=20;MQ=60.0;NF=0;NR=4;PP=28;QD=15.6928031368;SC=AATAAGCTAGGGTTTTTATCT;SbPval=1.0;Source=Platypus;TC=11;TCF=1;TCR=10;TR=4;WE=101808702;WS=101808684;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr10	101825160	rs3829161	C	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:75,48:0.39:123
chr10	101829431	rs78496874	T	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr10	101835764	rs61754515	C	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:114,48:0.30:162
chr10	101841153	rs10883439	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	101926991	rs11367256	TA	T	5868.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	101927047	rs7086710	A	G	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr10	101934079	rs3835272	A	AT	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	101938021	rs3750708	G	A	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	101949431	rs17880060	T	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr10	101953281	rs2274174	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	101967212	rs7909855	C	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	101977883	rs2230804	C	T	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	101978686	rs3763710	A	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	101979196	rs17886121	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	101980459	rs986266	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	101992923	.	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.814;QD=3.62;ReadPosRankSum=-1.003;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr10	101996787	rs10437479	C	T	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	102005620	rs12269345	C	T	3265.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.37;ReadPosRankSum=-0.467;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:3,131:0.98:134
chr10	102006429	rs4919438	T	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	102013168	rs200629539	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:190,113:0.37:303
chr10	102016044	rs2270962	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	102016268	rs2270961	G	A	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	102020626	rs66728174	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	102021888	rs149885165	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr10	102027365	rs3750710	T	C	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr10	102048700	rs74154621	T	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	102048722	rs74154622	T	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	102048859	rs896414	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.74;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	102048859	.	GTACCA	ATACCA,ATACCG	184	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=7,1;NR=21,7;PP=184,96;QD=7.81325759097;SC=AATAGTTTGTGTACCACTTTT;SbPval=0.55;Source=Platypus;TC=28;TCF=7;TCR=21;TR=28,8;WE=102048872;WS=102048849;set=Platypus	GT:AF:DP	0/1:1.00:28
chr10	102048864	rs114240853	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-3.232;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr10	102050347	rs2242053	T	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	102050971	rs5787377	A	AG	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	102051291	rs4917897	T	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr10	102055791	.	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=5.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-2.383;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr10	102056970	rs2278841	A	G	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.75;ReadPosRankSum=-0.862;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:26,64:0.71:90
chr10	102056970	.	AGG	GGT	1238	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=5;HapScore=2;MGOF=7;MMLQ=26;MQ=60.0;NF=11;NR=21;PP=1238;QD=40.3583710894;SC=ACCAGCCTATAGGGGGAGGGG;SbPval=0.53;Source=Platypus;TC=54;TCF=18;TCR=36;TR=32;WE=102056980;WS=102056960;set=Platypus	GT:AD:AF:DP	0/1:22,32:0.59:54
chr10	102056972	rs2278840	G	T	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.08;ReadPosRankSum=-1.119;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:25,64:0.72:89
chr10	102057005	rs2278839	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr10	102088906	rs3829159	C	T	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr10	102089174	rs574122	C	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr10	102104521	rs735877	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	102104593	rs199596951	AAT	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.162;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr10	102104600	rs373775876	AT	A	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.000;QD=11.51;ReadPosRankSum=0.212;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr10	102107162	rs11812482	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr10	102114432	rs12245399	CT	GG	5681.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;JOINED;set=Intersection	GT:AD:AF:DP	0/1:77,142:0.65:219
chr10	102116208	rs111712956	ATCCCC	A	5703.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:80,146:0.65:226
chr10	102116311	rs2234970	A	C	5395.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:127,256:0.67:383
chr10	102222825	rs3793772	T	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr10	102222957	rs3793771	G	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr10	102239829	rs2295770	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr10	102241998	rs17113137	G	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.542;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:223,88:0.28:311
chr10	102247408	rs2298075	C	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.623;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:161,81:0.33:242
chr10	102247863	rs114597830	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr10	102258439	rs9420792	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.101;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr10	102265056	.	A	AAC,AACAC	248.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=55;set=Intersection	GT:AF:DP	0/1:0.29:48
chr10	102265183	rs2295772	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr10	102265815	rs2295773	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr10	102265847	rs2295774	A	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr10	102269085	rs3793706	C	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr10	102269206	rs3763695	A	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:160,76:0.32:236
chr10	102275780	rs3750630	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr10	102289078	rs1800662	C	A	2793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-3.445;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:369,173:0.32:542
chr10	102289743	rs10883506	C	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:70,21:0.23:91
chr10	102295629	rs2295776	G	T	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=1.559;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:209,88:0.30:297
chr10	102295645	.	G	GT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=6.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-2.100;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:204,58:0.22:262
chr10	102295658	rs11190600	T	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.817;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=10.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.720;SOR=1.359;set=HC	GT:AD:AF:DP	0/1:206,62:0.23:268
chr10	102296061	rs2295779	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	102296461	rs10883509	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr10	102506070	rs4472867	G	C	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:352,230:0.40:582
chr10	102506103	rs4405241	C	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:205,147:0.42:352
chr10	102539429	rs7901210	C	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	102568872	rs1800897	C	T	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	102568983	rs1800898	A	C	9961.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr10	102586723	rs2270185	T	C	10971.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr10	102749069	rs17113613	G	A	10256.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr10	102770327	rs807022	A	G	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	102775221	.	ATG	A	202.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	102777151	rs61058141	CT	C	118	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.73;ReadPosRankSum=-0.447;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	102777461	rs10786615	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=23.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	102777768	rs11190793	C	G	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	102780312	rs7075685	G	T	1383.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.86;ReadPosRankSum=1.675;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr10	102780354	rs77484072	TG	T	5811.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=34.39;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	102780638	rs1998249	A	C	97.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	102783145	rs3740496	G	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	102783678	rs6584410	T	C	10718.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr10	102792200	rs61397346	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	102792295	rs807014	G	A	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	102827228	rs2295715	G	A	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	102827757	rs60001046	G	GT	5912.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	102987025	rs150918757	G	A	4180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-0.321;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:97,193:0.67:290
chr10	102997581	rs678741	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=-1.591;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	103221870	rs5787432	CAGG	C	4037.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	103281634	rs6584429	C	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	103281676	rs6584430	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	103290938	rs11816753	T	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	103340144	rs3730476	A	G	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:88,153:0.63:241
chr10	103340179	rs3730475	A	G	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:50,78:0.61:128
chr10	103340235	rs3730474	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr10	103343533	rs3730465	A	G	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr10	103344589	rs3730463	T	G	3741.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr10	103345940	rs3730462	CTGTTG	C	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr10	103354554	rs7911520	A	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:40,90:0.69:130
chr10	103364919	.	T	C	486.77	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,34:0.28:122
chr10	103558701	rs17697840	G	A	5382.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:153,253:0.62:406
chr10	103563470	rs17697930	A	G	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:62,126:0.67:188
chr10	103567665	rs372242564	GA	G	1384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.280;QD=8.88;ReadPosRankSum=-0.730;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:51,105:0.67:156
chr10	103588734	rs1562364	A	G	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:80,178:0.69:258
chr10	103591101	rs72546682	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr10	103599325	rs874885	A	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr10	103609704	rs7918620	G	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr10	103717493	rs376923161	T	TA	226.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=11.856;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.639;QD=8.72;ReadPosRankSum=0.914;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr10	103751836	rs17778015	C	T	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:110,183:0.62:293
chr10	103766490	.	A	AT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.788;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr10	103793181	.	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.982;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr10	103799700	rs80061062	A	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr10	103799758	rs11191190	C	T	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:70,122:0.64:192
chr10	103799984	.	ACAC	A	46.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,3:0.18:17
chr10	103900729	rs61731871	G	A	15561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=1150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-0.665;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:405,738:0.65:1143
chr10	103904763	rs11357964	TC	T	2326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.223;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:87,119:0.58:206
chr10	103906479	rs80014803	G	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:75,166:0.69:241
chr10	103918856	.	G	C	91	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5137;HP=1;HapScore=2;MGOF=42;MMLQ=23;MQ=57.08;NF=5;NR=2;PP=91;QD=17.9673160782;SC=AAAAAATGGTGGACTCCTAAG;SbPval=0.48;Source=Platypus;TC=9;TCF=7;TCR=2;TR=7;WE=103918864;WS=103918846;set=Platypus	GT:AD:AF:DP	1/0:2,7:0.78:9
chr10	103920255	rs145855726	T	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:204,96:0.32:300
chr10	103920475	rs1049455	T	C	5505.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:141,258:0.65:399
chr10	103990990	rs112979695	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	103991381	rs2281983	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr10	104019756	rs116242655	T	C	3804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-1.124;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:100,185:0.65:285
chr10	104110843	.	C	CAA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.473;QD=3.52;ReadPosRankSum=1.501;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	104112208	rs116123526	T	C	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.059;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:82,111:0.58:193
chr10	104118885	rs111999911	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr10	104120686	rs138841850	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr10	104121828	.	TTTTG	T	521	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=23;HapScore=2;MGOF=35;MMLQ=27;MQ=46.65;NF=0;NR=11;PP=521;QD=47.6363636364;SC=TTTTTTTTTTTTTTGAGATGG;SbPval=1.0;Source=Platypus;TC=19;TCF=2;TCR=17;TR=11;WE=104121839;WS=104121818;set=Platypus	GT:AD:AF:DP	1/0:8,11:0.58:19
chr10	104127171	rs2273555	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.321;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:106,59:0.36:165
chr10	104128954	rs7902882	T	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	104136469	rs2180707	T	C	7399.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	104136729	rs79933482	A	G	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:75,107:0.59:182
chr10	104136873	rs75319510	G	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,110:0.61:181
chr10	104156383	rs11574845	T	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:113,49:0.30:162
chr10	104156392	rs200498380	T	TG	4271.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,121:0.68:179
chr10	104157204	rs116240298	G	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,88:0.58:151
chr10	104157711	rs7897947	T	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.216;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr10	104157727	rs4919632	C	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=-2.536;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:68,38:0.36:106
chr10	104158089	rs11574846	G	A	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:190,284:0.60:474
chr10	104158972	.	CAA	C	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.878;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr10	104158993	rs137919911	TG	T	387.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:76,19:0.20:95
chr10	104159196	rs4919633	A	G	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	104160434	rs4919634	A	G	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	104160875	rs11574850	G	C	9950.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:243,463:0.66:706
chr10	104161967	rs7077329	T	C	14308.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr10	104163489	rs7068416	G	A	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	104170962	rs116531486	C	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr10	104174738	rs150603372	C	T	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:107,150:0.58:257
chr10	104179984	rs77594830	C	G	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:114,199:0.64:313
chr10	104196269	rs76149940	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr10	104196465	rs2224374	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	104210735	rs2281878	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr10	104211794	rs913026	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.44;ReadPosRankSum=-0.207;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	104211800	rs149710592	ATT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.70;ReadPosRankSum=1.108;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	104214080	rs148334455	CT	C	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.746;QD=4.62;ReadPosRankSum=-1.617;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:79,49:0.38:128
chr10	104215075	rs151146512	CTCTT	C	2178.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:122,62:0.34:184
chr10	104229785	rs41306870	C	T	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:333,144:0.30:477
chr10	104230897	.	TCAG	T	623	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MGOF=49;MMLQ=27;MQ=60.0;NF=4;NR=9;PP=623;QD=51.2307692308;SC=CCCCGGCTCTTCAGGTCCTCA;SbPval=0.3;Source=Platypus;TC=52;TCF=11;TCR=41;TR=13;WE=104230907;WS=104230887;set=Platypus	GT:AD:AF:DP	0/1:39,13:0.25:52
chr10	104230930	rs68007409	TTCGGTGCTGGG	T	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr10	104231054	rs11191295	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,36:0.32:111
chr10	104231234	rs913028	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	104231651	rs7081110	A	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr10	104231662	rs7081467	G	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr10	104232716	rs3740415	G	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.837;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:365,156:0.30:521
chr10	104232809	rs3740414	T	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr10	104235832	.	G	GT	43.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.87;ReadPosRankSum=-0.732;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	104263921	rs189234140	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:119,57:0.32:176
chr10	104268953	rs35166585	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.769;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:110,37:0.25:147
chr10	104269223	.	A	C	135.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	104356777	rs142512844	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr10	104356822	rs10786690	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	104375234	rs137942998	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr10	104377180	rs141950577	T	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:371,190:0.34:561
chr10	104377362	rs186697227	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr10	104387019	rs12414407	T	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	104389932	rs4917980	T	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	104414221	rs3850699	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	104415093	rs34032774	CT	C	1603.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr10	104415720	rs4274160	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	104415807	.	C	G	9329.77	.	AC=1;AF=0.500;AN=2;DP=329;set=Intersection	GT:AD:AF:DP	0/1:96,228:0.70:324
chr10	104415810	rs3217079	GCTCTCCCTGGA	G	4916.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:120,229:0.66:349
chr10	104459079	rs59504153	TAA	T	2032.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	104465374	rs12761195	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,7:0.19:37
chr10	104473813	rs2248684	C	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	104474107	rs2248679	G	A	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	104486304	rs2244647	G	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr10	104487072	rs2244518	G	T	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	104489011	rs2244254	G	C	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr10	104491702	rs3802676	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr10	104492707	rs2778037	G	C	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:96,119:0.55:215
chr10	104504003	rs73344501	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-0.173;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	104572276	rs284861	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr10	104572963	rs284860	T	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:233,107:0.31:340
chr10	104633032	.	T	TTTA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.598;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	104809458	rs74464353	C	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,111:0.66:167
chr10	104828551	rs114902589	C	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr10	104860395	rs2863727	T	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	105128134	rs10883859	T	G	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=33.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=2.657;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:26,60:0.70:86
chr10	105139888	.	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.527;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr10	105144986	rs7069667	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	105164784	rs7914506	A	G	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:54,118:0.69:172
chr10	105165615	rs7919031	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	105176179	rs7894407	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr10	105201565	rs2281861	G	A	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:27,80:0.75:107
chr10	105201577	rs2281860	C	T	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,95:0.67:141
chr10	105204454	rs942900	T	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr10	105205302	rs7831	A	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,54:0.76:71
chr10	105214932	rs729211	T	C	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	105215016	rs2986016	A	G	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	105218252	rs2986017	A	G	15390.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=0.438;SOR=0.246;set=HC	GT:AD:AF:DP	1/1:2,487:1.00:489
chr10	105218252	.	AGC	GGC,GGT	2742	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=13;MMLQ=23;MQ=60.0;NF=135,43;NR=133,36;PP=2742,995;QD=20;SC=CCGGCGGCCCAGCGGCCGCTT;SbPval=0.53;Source=Platypus;TC=272;TCF=138;TCR=134;TR=268,79;WE=105218262;WS=105218242;set=Platypus	GT:AF:DP	0/1:0.99:272
chr10	105218254	rs4918016	C	T	3144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=0.522;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:306,175:0.36:481
chr10	105218359	rs2986018	T	C	12023.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,465:1.00:467
chr10	105233110	rs2986035	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:201,124:0.38:325
chr10	105233174	rs143800079	T	TGGGGGCTCAGGCACTGCG	4140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.726;QD=19.44;ReadPosRankSum=0.086;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:108,105:0.49:213
chr10	105238809	rs12267688	G	A	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:71,129:0.65:200
chr10	105254090	rs2986041	G	T	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	105315316	rs185210137	T	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.453;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	105315323	rs139412972	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.079;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr10	105344451	rs11191737	G	A	6699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.435;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:178,310:0.64:488
chr10	105344756	rs2236209	T	C	4337.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:110,203:0.65:313
chr10	105345001	rs116767878	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:107,83:0.44:190
chr10	105361816	rs4918031	T	G	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	105362104	rs11191741	G	A	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:175,242:0.58:417
chr10	105362209	rs4917396	T	C	13994.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr10	105362790	rs74788555	G	A	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:245,170:0.41:415
chr10	105365386	rs7088714	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	105365500	rs75236904	G	T	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:130,70:0.35:200
chr10	105428453	rs10533306	CAG	C	21660.73	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr10	105483964	rs12220667	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	105495612	rs6584568	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:109,54:0.33:163
chr10	105561032	rs78623614	A	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr10	105614884	rs4918064	A	G	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	105615105	rs10883929	G	C	11877.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr10	105657316	rs10786775	G	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	105657363	rs11191853	C	G	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr10	105658588	rs2902639	G	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr10	105659826	rs2487999	T	C	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	105670123	rs78436817	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr10	105752331	.	CTT	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-3.054;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr10	105778745	rs73328281	C	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	105793173	rs1747675	T	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	105793750	rs17116350	T	C	14188.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr10	105796399	rs2274098	G	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	105796449	rs2476957	A	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	105796738	rs805714	A	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	105796819	rs2476958	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	105797045	rs34553613	A	ATT	261.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.319;QD=14.55;ReadPosRankSum=-1.960;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	105797378	rs2282437	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	105797693	rs61382109	TA	T	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	105797989	.	TACACACACACACACACACACACAC	T,TAC	1643.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=55;set=Intersection	GT:AF:DP	1/2:0.19,0.79:47
chr10	105798872	rs2274100	T	C	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	105799216	rs2296219	G	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	105799550	rs376820281	ACACG	A	133.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr10	105799552	rs67083195	ACG	A	422.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	105799599	rs11191905	C	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	105800321	rs12763538	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	105800348	rs139480552	ATGGATGGATAGG	A	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	105801253	rs4918079	G	A	4685.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-0.746;SOR=0.530;set=HC	GT:AD:AF:DP	1/1:1,193:0.99:194
chr10	105805310	rs805719	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	105805436	rs805720	G	A	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	105806310	rs805721	C	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	105810400	rs805722	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	105811218	rs12260615	T	A	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	105815201	rs201385541	G	GTC	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.207;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	105815204	rs1747676	A	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=1.349;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	105815241	rs1747677	A	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	105816685	rs805696	T	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	105816916	rs805698	C	T	10110.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	105817043	rs805699	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	105821136	rs805704	A	T	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	105821294	rs805705	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	105821836	rs805706	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	105831714	.	G	GCA	35	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.4999;HP=1;HapScore=3;MGOF=7;MMLQ=21;MQ=60.0;NF=1;NR=3;PP=35;QD=10.25;SC=ACACACGCATGCACACACACA;SbPval=0.83;Source=Platypus;TC=19;TCF=7;TCR=12;TR=4;WE=105831723;WS=105831704;set=Platypus	GT:AD:AF:DP	1/0:15,4:0.21:19
chr10	105837000	rs2274106	A	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	105882055	rs7901021	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	105882765	rs10786783	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	105883395	rs1338777	A	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	105885525	rs201504294	CT	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.063;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr10	105901936	rs637022	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	105905380	rs141870801	TGAC	T	2617.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	105920990	rs36092125	G	GT	2781.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	105921085	rs605712	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	105922056	rs35188172	GT	G	12547.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	105932157	rs35761606	CT	C	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	105938913	rs60561340	CAG	C	1370.74	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:4,48:0.92:52
chr10	105939451	rs624159	C	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	105942304	rs569856	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	105942337	rs569967	G	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	105945985	rs479879	A	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	105956776	rs584309	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	105957561	rs678292	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	105957613	rs677904	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	105967413	rs17824653	A	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr10	105991884	rs789577	T	G	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	106028157	rs641071	G	T	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	106037894	rs157077	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	106039185	rs156697	A	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	106039303	rs276203	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	106159305	rs10509772	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr10	106160731	rs41317250	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	106163753	rs7087640	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	106207451	rs12766595	A	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:138,75:0.35:213
chr10	106582029	rs1490182	C	T	148.41	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	106602362	rs10884052	G	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	106602496	rs5787553	C	CT	4247.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=25.13;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	106675585	rs6584635	C	T	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	106737026	rs61867171	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.43;ReadPosRankSum=-0.449;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	106802664	rs75302711	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr10	106849410	rs12251377	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr10	106907440	rs791125	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr10	106907586	rs791126	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr10	106916819	rs2297500	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr10	106974123	.	AAC	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.08;ReadPosRankSum=0.287;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:607,67:0.10:674
chr10	108367020	rs7082289	C	T	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:93,178:0.66:271
chr10	108371571	rs137930414	A	AGTTT	2748.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	108389249	rs1322004	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	108427682	rs66783381	CA	C	46	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=11.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	108439103	rs821929	A	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:29,98:0.77:127
chr10	108447836	rs821935	C	T	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr10	108466412	rs2756231	C	T	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	108469116	rs148857122	A	G	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.159;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:81,108:0.57:189
chr10	108469161	rs2756232	C	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr10	111625108	rs483072	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	111630731	rs612155	G	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	111633025	rs642938	A	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	111646147	rs623980	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr10	111647738	rs472049	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.222;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	111652610	rs3737153	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr10	111667664	rs944969	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	111667702	rs686155	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	111683280	rs145751207	CGGCG	C	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	111706856	rs12569906	A	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr10	111711719	rs139637394	T	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr10	111860673	rs7090030	T	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	111878510	rs12268910	T	G	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	111878880	rs73352915	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	111881839	rs9783198	G	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	111886089	rs3731566	G	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	111886332	rs76005997	A	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.38;ReadPosRankSum=-1.531;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	111985946	rs35741140	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr10	112044553	rs5787843	G	GTTC	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr10	112054908	rs7074311	C	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	112266822	rs1889566	GC	AT	26174.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr10	112327663	.	C	T	2054.77	.	AC=1;AF=0.500;AN=2;DP=140;set=Intersection	GT:AD:AF:DP	0/1:38,96:0.72:134
chr10	112327678	rs55750861	C	CA	940.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:81,35:0.30:116
chr10	112328617	rs147510961	AAAAC	A	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.51;ReadPosRankSum=-0.538;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr10	112328650	rs149144103	A	AT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.932;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr10	112328838	rs4917577	C	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	112337702	rs7914351	T	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.249;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:30,45:0.60:75
chr10	112340871	rs7911129	A	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.619;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr10	112349204	rs2419572	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr10	112349879	rs3737294	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr10	112356331	rs7075340	G	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	112360118	rs7094067	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	112360315	.	G	GT	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=3.089;QD=1.93;ReadPosRankSum=0.927;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:88,31:0.26:119
chr10	112360368	rs7094685	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:37,76:0.67:113
chr10	112361870	rs2419565	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=24.55;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	112362019	rs2039874	G	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	112404302	rs35141404	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr10	112404362	.	A	T	2982.77	.	AC=1;AF=0.500;AN=2;DP=217;set=Intersection	GT:AD:AF:DP	0/1:76,137:0.64:213
chr10	112543217	rs6585012	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr10	112544063	rs7898438	A	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr10	112570243	rs11195338	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr10	112572458	rs1417635	G	C	14150.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr10	112579663	rs11195343	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	112583189	rs202034773	CTTTTTTTTTTTTT	C	1235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.575;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.453;QD=30.89;ReadPosRankSum=0.680;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:3,37:0.93:40
chr10	112590778	rs74407586	G	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.746;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:154,62:0.29:216
chr10	112590810	rs7070640	G	C	9422.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	112641053	rs7081726	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	112650209	rs2295992	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	112697017	.	CT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.508;QD=1.80;ReadPosRankSum=-0.400;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:115,40:0.26:155
chr10	112764594	rs1980869	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	113913222	rs2297991	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	113915574	rs5787948	C	CA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=1.087;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr10	113917085	rs2254537	T	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr10	113917982	rs6585140	C	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	113920465	rs2277207	G	A	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	113920652	rs3824626	T	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	113921354	rs2250802	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	113923595	rs10736219	C	G	10633.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr10	113926012	rs10749108	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	113928487	rs2251579	A	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	113935379	rs10787428	T	C	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	113937941	rs2487294	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	113940329	rs2792751	T	C	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	114053546	rs726009	C	G	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:43,89:0.67:132
chr10	114059064	rs41306846	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr10	114059330	rs11279253	TCTCTGTTTTC	T	1364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.844;QD=6.96;ReadPosRankSum=-1.466;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:151,45:0.23:196
chr10	114061979	rs10749114	G	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	114136349	rs2277208	G	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	114168056	.	CAA	C	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=6.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=2.535;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr10	114169552	rs7919710	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	114176693	rs11812261	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:183,102:0.36:285
chr10	114181683	rs2255740	A	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	114185856	rs34341101	T	TG	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	114186624	rs2256368	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	114496717	rs41292624	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr10	114724473	rs11196171	A	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=5.685;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.925;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:152,43:0.22:195
chr10	114903859	.	CTG	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.003;QD=1.51;ReadPosRankSum=1.059;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	114919603	.	C	CTCTCT	378.74	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=47.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	114920512	rs17130196	C	G	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=2.627;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:275,107:0.28:382
chr10	114925750	rs201172396	C	A	6766.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:181,310:0.63:491
chr10	114925758	rs1056877	T	C	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:282,144:0.34:426
chr10	115327193	rs2286745	A	G	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr10	115334124	rs3740530	C	T	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=0.340;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:79,157:0.67:236
chr10	115335843	rs911709	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	115336758	rs2302374	A	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr10	115338615	rs11575684	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr10	115340492	rs2286742	G	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr10	115341545	rs2181082	G	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr10	115343803	rs911703	C	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr10	115343831	rs911701	A	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr10	115343852	rs911700	C	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:34,70:0.67:104
chr10	115345850	rs3781378	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr10	115349397	rs11196388	AG	A	3220.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	115355195	.	A	G	35	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5051;HP=7;HapScore=2;MGOF=19;MMLQ=21;MQ=60.0;NF=2;NR=1;PP=35;QD=23.2570708491;SC=TGCAGATAAAAAAAACAAAAA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=115355203;WS=115355193;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	115357078	rs12241995	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr10	115357131	rs113389465	CA	C	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	115370254	rs12243176	A	G	10183.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:151,266:0.64:417
chr10	115370274	rs10749138	T	C	10196.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:145,265:0.65:410
chr10	115373851	rs2419850	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	115385976	rs3814578	A	C	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:11,393:0.97:404
chr10	115392919	rs2270182	T	A	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	115393948	rs11196400	C	T	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr10	115401031	rs5788038	AT	A	2830.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	115409840	rs2275799	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	115411598	rs4918861	C	A	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	115411614	rs2154028	A	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr10	115412686	rs3121488	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	115412793	rs3737322	A	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	115413901	rs41310308	T	C	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr10	115417289	rs1891762	G	A	9146.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr10	115422277	rs10430683	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr10	115422448	rs115585400	G	A	7136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-1.054;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:202,346:0.63:548
chr10	115422474	rs3127122	A	G	5580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.277;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:160,270:0.63:430
chr10	115423042	rs74608426	G	A	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.289;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:83,147:0.64:230
chr10	115423747	rs1109927	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-2.243;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr10	115439569	rs7921977	C	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.78;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	115439640	rs10553596	CTT	C	7863.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=44.43;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	115439718	.	G	T	2293.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:69,112:0.62:181
chr10	115457264	rs11555408	T	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr10	115515120	rs3981351	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	115606887	rs17235150	T	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	115803905	.	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=2.284;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr10	115804036	rs1801252	A	G	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.431;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:38,65:0.63:103
chr10	115805056	rs1801253	G	C	9814.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:191,464:0.71:655
chr10	115889872	rs606682	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr10	115910928	rs7095762	G	T	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr10	115922774	rs1061159	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr10	115961824	rs112947234	G	A	224.98	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	115963126	rs11313522	CT	C	1517.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:38,87:0.70:125
chr10	115973468	rs58093408	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr10	115986015	rs138611231	A	AT	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr10	115986065	rs12265237	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	116008464	rs9665610	T	A	3785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.379;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:126,184:0.59:310
chr10	116008497	rs9664945	G	A	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:129,196:0.60:325
chr10	116014827	rs12262953	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr10	116032519	rs597371	A	G	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	116044587	rs10787521	C	T	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,90:0.70:128
chr10	116048876	rs143337523	G	C	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:121,204:0.63:325
chr10	116050008	rs11196686	A	G	3713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-1.527;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:148,185:0.56:333
chr10	116056779	rs62641713	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:287,130:0.31:417
chr10	116058933	rs1889450	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	116060194	rs3214266	A	AG	7387.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr10	116060387	rs2286396	T	C	6639.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:177,318:0.64:495
chr10	116062073	rs74157583	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:106,45:0.30:151
chr10	116064528	rs73365341	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:66,20:0.23:86
chr10	116068176	rs581327	A	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	116073801	rs621375	T	C	9141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.228;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=8.798;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.25;ReadPosRankSum=-1.457;SOR=0.058;set=HC	GT:AD:AF:DP	1/1:4,373:0.99:377
chr10	116075228	rs694883	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	116075271	rs377755078	T	TCC	1041.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr10	116079505	rs10885547	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr10	116085782	rs111594798	G	GCCC	10652.73	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:121,264:0.69:385
chr10	116091555	rs10787524	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:55,86:0.61:141
chr10	116100320	rs4752395	T	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr10	116199721	rs57307018	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr10	116199754	rs181975867	A	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,39:0.34:115
chr10	116203911	.	GAA	G,GA	659.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=8.361;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=1.425;SOR=1.569;set=HC	GT:AD:AF:DP	1/2:10,23,23:0.41,0.41:56
chr10	116203974	rs10160093	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr10	116205267	rs6585279	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr10	116207642	rs34118174	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:106,45:0.30:151
chr10	116207687	rs34542287	T	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr10	116209970	.	T	TAA	156.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.25;ReadPosRankSum=0.068;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	116211246	rs2145895	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	116222749	rs7920878	G	A	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=1.155;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:27,51:0.65:78
chr10	116225365	rs7899255	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	116228056	rs138132630	TG	CA	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr10	116304971	rs2483595	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	116307504	rs2247528	A	G	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:1,356:1.00:357
chr10	116335246	rs985273	G	A	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,461:1.00:462
chr10	116417694	rs112229931	C	G	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-1.455;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:183,86:0.32:269
chr10	116417800	rs35474148	G	A	5170.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:157,245:0.61:402
chr10	116605738	.	T	TA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.254;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	116608298	rs7069726	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr10	116659253	rs10885629	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	116659253	.	ACG	GCA,GCG	561	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=17;MQ=60.0;NF=22,33;NR=21,35;PP=561,265;QD=14.2899505782;SC=CCTCAGGCAGACGTTGCCTTC;SbPval=0.45;Source=Platypus;TC=69;TCF=33;TCR=36;TR=43,68;WE=116659263;WS=116659243;set=Platypus	GT:AF:DP	0/1:0.62:69
chr10	116659255	rs62641708	G	A	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=1.231;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:38,101:0.73:139
chr10	116697960	rs17092618	G	C	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	116711041	rs114107946	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.13;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	116719543	rs7099565	G	A	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	116730337	rs6585309	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	116734069	rs6585312	G	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	116853177	rs2484265	C	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	116853865	.	G	GC	111.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr10	116856543	rs1264777	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr10	116920034	.	C	CT	27	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=11;HapScore=2;MGOF=1;MMLQ=26;MQ=60.51;NF=0;NR=3;PP=27;QD=13.0;SC=TCCAAAATGTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=3;WE=116920042;WS=116920024;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	116931101	rs3086141	C	CTT	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr10	117075175	rs1953758	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	117278988	rs6421370	G	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	117357169	rs11197326	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.844;QD=5.14;ReadPosRankSum=-2.054;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	117357264	rs11197327	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.172;SOR=1.579;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr10	117486910	rs2286631	T	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr10	117856379	rs66851912	TGCACAC	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.745;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr10	117856388	rs72411923	ACACG	A	508.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr10	117856392	rs7910122	G	A	54.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,8:0.20:40
chr10	117884950	rs2245020	G	A	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:120,66:0.35:186
chr10	117971016	rs7090693	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr10	117986207	rs7094346	G	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	118015007	rs56869104	GA	G	1512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=0.298;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr10	118015029	rs57732230	A	C	1723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=2.348;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:78,60:0.43:138
chr10	118031349	rs1362216	G	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:87,55:0.39:142
chr10	118031376	rs2532691	C	A	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	118031619	rs2577360	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr10	118084696	rs112951022	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr10	118215150	rs34077637	C	CT	218.87	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:2,14:0.88:16
chr10	118231360	rs10736251	G	A	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	118231363	rs1897519	A	G	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	118231406	rs10749217	A	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	118306855	rs76246039	A	C	11014.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=0.880;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,436:1.00:437
chr10	118313116	rs2915749	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	118313265	rs2915748	T	C	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	118327271	rs74568396	C	T	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	118351905	rs1867991	A	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr10	118355695	rs2915765	A	T	8877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-2.120;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:192,413:0.68:605
chr10	118357490	rs2915764	C	T	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	118359548	rs3816355	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr10	118363642	rs3010501	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr10	118364818	rs2915754	G	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	118364842	rs2915753	A	G	456.78	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr10	118380511	rs3010502	A	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	118383463	rs56189579	A	AG	6844.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=37.00;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	118387137	rs7092580	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	118394551	rs2286779	G	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr10	118397884	rs4751995	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.998;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr10	118397894	rs4751996	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=2.012;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr10	118398046	rs7910135	C	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	118401565	rs56012523	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr10	118404620	rs2301179	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:159,91:0.36:250
chr10	118404700	rs2301178	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr10	118423572	rs3830026	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr10	118451699	rs740595	T	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	118451810	rs733216	A	G	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr10	118452044	rs2240711	G	T	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	118452099	rs2240710	C	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	118464867	rs114188352	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr10	118466660	.	GCGCGCACA	G	102.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr10	118466664	rs79355850	G	A	145.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.629;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.57;ReadPosRankSum=-1.383;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	118501765	rs3095121	A	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	118616110	rs7083543	C	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.095;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:186,45:0.19:231
chr10	118633548	rs1637574	A	G	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	118643670	rs2257791	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:64,125:0.66:189
chr10	118643962	rs17095392	T	C	59.82	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	118667454	rs74161333	T	A	6053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.686;QD=15.21;ReadPosRankSum=1.272;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:126,272:0.68:398
chr10	118671040	rs74159005	T	C	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:101,233:0.70:334
chr10	118671343	rs62641722	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr10	118671455	rs74159007	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	118699956	rs74159015	T	C	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-1.675;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:31,98:0.76:129
chr10	118708315	rs10595325	GAGA	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.279;QD=12.93;ReadPosRankSum=-0.660;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	118897607	rs34250461	CA	C	369.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.014;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr10	118897628	.	GGGGC	G	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.710;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=1.559;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	118897629	rs372806696	GGGC	G	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.148;ClippingRankSum=-0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=-0.967;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	118927418	rs12249480	T	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr10	118969248	rs363359	C	G	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:105,205:0.66:310
chr10	119001151	rs2619094	A	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	119013071	rs199881047	C	CG	180.87	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=36.17;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	119013080	rs2256299	T	G	221.84	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=36.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	119014023	rs2072362	C	T	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	119014931	rs363420	C	T	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:79,151:0.66:230
chr10	119014948	rs363343	C	A	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:74,141:0.66:215
chr10	119026221	rs363265	G	T	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:100,116:0.54:216
chr10	119026401	rs363266	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	119026566	rs363227	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:29,118:0.80:147
chr10	119027123	rs363228	C	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr10	119027411	rs363271	G	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	119029744	rs363272	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:77,150:0.66:227
chr10	119042761	rs363293	C	T	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	119043835	rs363295	G	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr10	119133968	rs3814230	G	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:271,114:0.30:385
chr10	119134058	rs3814229	T	C	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:266,132:0.33:398
chr10	119134433	rs73393113	G	A	6808.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:163,319:0.66:482
chr10	119307524	rs2240776	T	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	119793629	rs2928118	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	119799761	rs62641701	C	T	9941.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr10	120070843	rs34120011	G	GA	563.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr10	120081948	rs853911	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	120353910	rs1613448	T	C	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	120354472	rs938700	C	T	7385.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:191,345:0.64:536
chr10	120460715	rs2274314	G	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr10	120789548	rs79170274	T	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:106,53:0.33:159
chr10	120796572	rs11336519	TC	T	979.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=0.579;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:4,43:0.91:47
chr10	120803746	rs3740553	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr10	120809261	.	A	G	1208.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr10	120817450	rs10886375	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:87,49:0.36:136
chr10	120818609	rs6585524	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	120819453	rs10787901	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	120819458	rs10787902	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=1.068;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr10	120819679	rs74324331	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr10	120820224	rs3740555	C	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.964;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:58,33:0.36:91
chr10	120828969	rs7908387	A	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.952;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr10	120864868	rs1511033	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	120883117	rs372448900	CT	C	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.532;QD=2.60;ReadPosRankSum=-0.494;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:186,105:0.36:291
chr10	120896027	rs11198799	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-2.311;QD=8.41;ReadPosRankSum=-0.843;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:72,61:0.46:133
chr10	120900625	rs2275110	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr10	120905940	rs138059828	CGTGT	C,CGTGTGT	1351.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=153;MQ=59.83;set=Intersection	GT:AF:DP	1/2:0.68,0.25:81
chr10	120905976	rs33947324	C	CGT	1986.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr10	120907173	rs150807690	T	TG	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr10	120907203	rs61874342	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr10	120917269	rs2420494	A	T	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	120917445	rs2275111	G	A	6139.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:151,285:0.65:436
chr10	120919179	rs3740558	G	A	3213.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:60,147:0.71:207
chr10	120919246	rs2181118	T	C	9282.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	120920588	rs10749291	T	C	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr10	120923780	rs35023478	C	CTT	463.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=0.116;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr10	120924874	rs933092	G	C	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	120928938	rs2271362	C	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr10	120933324	rs3758609	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	121093160	rs10886461	A	C	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	121140321	rs2275036	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr10	121140511	rs4751714	A	G	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	121140534	rs2275037	C	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	121156151	rs41284420	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=1.829;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr10	121190113	rs915120	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	121199189	rs2245364	T	C	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr10	121199437	rs915116	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	121201626	rs2275044	T	C	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	121212378	rs369945589	A	C	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:117,195:0.62:312
chr10	121212405	rs2297641	C	T	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr10	121212586	.	A	T	885.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr10	121212597	rs12721553	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr10	121286692	rs2301181	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	121287019	rs3009921	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	121338401	rs4752334	T	A	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	121429256	rs2240777	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr10	121429413	rs143752613	G	A	5357.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:132,253:0.66:385
chr10	121431865	rs74157690	G	T	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:465,284:0.38:749
chr10	121435955	rs196294	A	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	121436068	rs3858339	T	G	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.060;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:213,102:0.32:315
chr10	121436286	rs3858340	C	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:220,88:0.29:308
chr10	121436362	rs196295	A	G	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr10	121551581	rs2289306	A	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:291,118:0.29:409
chr10	121571507	rs3781503	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr10	121580481	rs28655395	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr10	121582556	rs2289307	T	C	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.227;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:135,61:0.31:196
chr10	121586882	rs3188055	A	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:315,129:0.29:444
chr10	121586951	rs150666811	G	C	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:156,294:0.65:450
chr10	121657801	rs144326454	CTG	C	588.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr10	121663483	rs2475304	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr10	121675413	rs55748524	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:93,40:0.30:133
chr10	121678896	rs2475300	C	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr10	121679013	rs2475298	A	G	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=1.580;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:65,109:0.63:174
chr10	121685448	rs6585564	A	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	121717932	rs11199132	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=2.045;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr10	121717956	rs34665773	GT	G	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr10	121718112	rs11199134	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.313;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:123,32:0.21:155
chr10	122216790	rs10886691	A	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	122263555	rs2478418	A	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	122273276	rs5788426	CT	C	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr10	122334561	rs4751791	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr10	122610927	rs17100985	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:122,38:0.24:160
chr10	122610983	rs35692153	G	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:226,66:0.23:292
chr10	122611046	rs78163411	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:219,76:0.26:295
chr10	122619466	rs10563638	TACAC	T,TAC	1058.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;QD=31.14;SOR=1.819;set=HC	GT:AD:AF:DP	1/2:0,17,17:0.50,0.50:34
chr10	122622121	rs3816173	A	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	122630587	rs4281410	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr10	122630877	.	C	CT	839.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr10	122643447	rs7068836	A	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr10	122643597	rs4752469	C	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=1.336;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr10	122643699	rs4752470	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr10	122645376	rs7899928	A	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr10	122646113	rs7079527	C	T	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr10	122646160	rs11395714	G	GA	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr10	122646379	rs7079830	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr10	122648750	rs141904743	T	TTTTTGTTTTG	682.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr10	122649482	rs2289337	A	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:51,104:0.67:155
chr10	122659490	rs2289336	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr10	122660701	rs11199635	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	122663529	rs74158348	G	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr10	122663585	rs1652727	G	A	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	122664388	rs10886798	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:97,59:0.38:156
chr10	122664694	rs10788127	G	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	122664967	rs1866516	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	122665285	rs1652726	A	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr10	122665489	rs12268298	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr10	123241616	rs3135816	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:67,100:0.60:167
chr10	123241794	rs2556537	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	123247044	rs2981460	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	123247550	rs35337478	G	A	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:75,118:0.61:193
chr10	123247669	rs111564057	AC	A	624.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr10	123247751	rs4647914	T	TA	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.313;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	123277666	rs60468962	G	GTA	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	123277742	rs2420942	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	123279745	rs2981448	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	123310733	rs11450939	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.942;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr10	123323962	rs2303568	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr10	123353268	rs377570596	G	A	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:140,240:0.63:380
chr10	123673206	rs11200251	C	T	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:74,112:0.60:186
chr10	123673339	rs10749435	T	C	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	123719835	rs10887033	T	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.647;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr10	123721624	.	TAAA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.11;ReadPosRankSum=1.863;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr10	123722613	.	C	A	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.876;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr10	123724701	rs34074742	AC	A	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	123724767	rs4752626	T	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	123730685	rs371483590	T	TAA	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-0.742;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr10	123792487	.	A	AAACAAC	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.37;ReadPosRankSum=1.693;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	123792527	rs11361502	AC	A	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.148;QD=17.14;ReadPosRankSum=-0.434;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr10	123810060	rs11200367	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr10	123810115	rs11200368	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	123842065	rs2459103	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	123842523	rs11200385	G	A	7492.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:162,345:0.68:507
chr10	123843946	rs60531929	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:141,91:0.39:232
chr10	123844503	rs10887063	C	T	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:113,154:0.58:267
chr10	123845322	rs7073433	T	C	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	123845897	rs1106992	G	C	6444.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:122,289:0.70:411
chr10	123846192	rs73370132	G	A	6006.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:139,277:0.67:416
chr10	123846288	rs4752642	G	A	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:95,216:0.69:311
chr10	123846485	rs4751871	A	G	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:63,156:0.71:219
chr10	123846860	rs11599291	C	T	6229.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:186,289:0.61:475
chr10	123847355	rs10788237	G	A	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:96,199:0.67:295
chr10	123903133	rs12765679	G	A	6133.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:154,291:0.65:445
chr10	123923637	rs138851999	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr10	123972867	.	G	T	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=2.765;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:78,58:0.43:136
chr10	123976391	rs10444046	C	A	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.593;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:240,105:0.30:345
chr10	123986119	rs61312157	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.042;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr10	124034528	rs7096744	G	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:117,59:0.34:176
chr10	124034703	rs7080859	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:114,61:0.35:175
chr10	124034779	rs7097124	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr10	124036141	rs6585808	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.454;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr10	124036190	rs7086389	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr10	124036226	rs7086403	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr10	124036327	rs115514164	C	T	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:79,114:0.59:193
chr10	124036494	rs7090214	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr10	124057365	rs78709189	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr10	124058411	rs150599130	C	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr10	124089036	rs2421013	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,55:0.34:160
chr10	124091921	rs4627016	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr10	124096306	rs3817285	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.172;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr10	124097755	rs2271597	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr10	124152936	rs3838776	G	GA	641.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	124175273	rs4751892	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	124176452	rs4612730	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=2.019;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr10	124183687	.	GTTTT	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-2.450;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	124183695	.	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.65;ReadPosRankSum=0.327;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	124183732	rs4405249	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr10	124184567	rs9783213	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-1.691;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	124186714	rs2292626	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.212;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	124189010	rs10591719	TTGTGTG	T,TTGTGTGTGTGTGTG	466.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/2:0.38,0.62:13
chr10	124189113	rs72832716	G	A	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:63,122:0.66:185
chr10	124189197	rs1045216	A	G	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr10	124214242	rs376890266	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr10	124266991	rs147948338	GTTGT	G	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	124271589	rs2672586	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	124271595	rs2272599	G	A	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	124320194	rs2981745	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr10	124325409	rs3019515	T	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:161,100:0.38:261
chr10	124325569	rs3019516	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,22:0.30:73
chr10	124325631	rs2981768	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	124329580	rs11524819	C	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.334;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr10	124329583	rs11524820	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.816;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr10	124329672	rs3740220	TC	CT	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	0/1:162,76:0.32:238
chr10	124329710	rs11523871	C	A	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:161,72:0.31:233
chr10	124329746	rs3740222	A	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr10	124329801	rs3740223	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,14:0.25:57
chr10	124330240	rs2981790	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.351;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr10	124330252	rs2981791	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.990;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr10	124330421	rs75209396	C	G	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:116,200:0.63:316
chr10	124330427	rs3013236	C	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:191,103:0.35:294
chr10	124331867	rs7084792	C	T	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	124331944	rs2277229	C	T	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:163,69:0.30:232
chr10	124331957	rs2277230	T	C	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.357;QD=8.90;ReadPosRankSum=0.641;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:153,55:0.26:208
chr10	124331963	rs2277231	A	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.286;QD=9.21;ReadPosRankSum=0.143;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:144,55:0.28:199
chr10	124332035	rs2277232	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr10	124333308	rs2277235	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:151,62:0.29:213
chr10	124335866	rs1985025	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.502;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:97,24:0.20:121
chr10	124338476	rs1985796	G	A	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	124344995	rs11528754	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr10	124385429	rs147865628	A	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=-0.624;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:120,61:0.34:181
chr10	124385588	rs144488065	C	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:267,113:0.30:380
chr10	124389296	rs3013177	C	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	124392228	rs41308689	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr10	124392283	rs41317030	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr10	124399467	rs2261655	C	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	124399985	rs2261660	G	T	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	124402677	rs1052715	A	G	12334.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	124436530	rs3019500	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr10	124438677	rs2901342	A	T	60.84	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	124457452	rs2947594	C	T	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	124457906	rs2901343	C	T	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	124459139	rs11813597	T	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	124459248	rs41448048	G	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr10	124594153	rs11248321	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=0.389;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr10	124595874	.	GAAA	GAA,G	56	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5097,0.4903;HP=16;HapScore=3;MGOF=12;MMLQ=27;MQ=60.63;NF=0,0;NR=5,5;PP=56,12;QD=11.8;SC=ATGCTGTCAGGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=5,5;WE=124595884;WS=124595864;set=Platypus	GT:AF:DP	0/1:0.71:7
chr10	124600665	rs112767873	C	A	4417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.282;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:85,208:0.71:293
chr10	124600798	rs35299879	C	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:62,104:0.63:166
chr10	124600834	rs34246902	G	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr10	124605303	rs76691412	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:76,146:0.66:222
chr10	124609099	rs111560722	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr10	124610027	rs1891110	G	A	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr10	124647973	rs9423288	C	T	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:66,129:0.66:195
chr10	124648150	rs10902838	A	G	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.879;QD=4.68;ReadPosRankSum=0.728;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:227,98:0.30:325
chr10	124648206	rs11248323	C	T	4288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.088;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:85,197:0.70:282
chr10	124648285	rs10902839	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.257;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr10	124654345	rs35248586	CT	C	665.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr10	124697198	rs10794580	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:223,98:0.31:321
chr10	124739942	rs77793072	C	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr10	124742586	rs3736585	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	124742683	rs3736584	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	124742792	rs3736583	G	A	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	124742895	rs3736582	G	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	124745744	.	C	CAA	97.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.732;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	124746801	rs7096614	T	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	124749740	rs11190	A	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr10	124768437	rs201117089	A	AG	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.833;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	124786984	rs150706333	C	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr10	124787047	rs10794584	T	C	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	124787118	rs10902863	G	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	124806858	rs59024568	G	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=2.907;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:72,33:0.31:105
chr10	124810746	.	C	CT	291	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.7140;HP=10;HapScore=3;MGOF=21;MMLQ=27;MQ=60.0;NF=1;NR=11;PP=291;QD=25.25;SC=GTAATTCAGCCTTTTTTTTTT;SbPval=0.56;Source=Platypus;TC=15;TCF=1;TCR=14;TR=12;WE=124810754;WS=124810736;set=Platypus	GT:AD:AF:DP	0/1:3,12:0.80:15
chr10	124812487	rs2421166	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	124812685	rs11307362	AT	A	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:10,110:0.92:120
chr10	124914414	rs113756220	T	TCTGA	3740.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	124917238	rs2304550	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	124924402	rs7095154	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	124924484	.	CTT	C	1364.73	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	125425822	rs10902974	T	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	125425856	rs36209337	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.257;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr10	125426412	rs12263344	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:178,106:0.37:284
chr10	125426565	rs4980313	G	C	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	125447705	rs1878166	A	G	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:93,263:0.74:356
chr10	125473208	rs12256385	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.42;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	125506302	rs7088479	T	C	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	125521533	rs10794566	G	A	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:146,235:0.62:381
chr10	125521590	rs10794567	G	A	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:131,249:0.66:380
chr10	125521721	rs10751743	G	A	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	125521751	rs10794568	C	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	125526689	rs1896392	G	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	125528309	rs116463741	T	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr10	125557769	.	G	GA	34.06	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	125602696	rs144542851	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr10	125602948	rs5788632	A	AT,ATT	952.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.439;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.544;QD=9.34;ReadPosRankSum=-0.314;SOR=1.197;set=HC	GT:AD:AF:DP	1/2:28,37,37:0.36,0.36:102
chr10	125622250	rs11299200	CA	C	8540.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	125650793	rs28513406	A	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	125673492	rs7893288	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:131,59:0.31:190
chr10	125673547	rs4329614	T	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr10	125780647	rs78068995	A	G	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:78,156:0.67:234
chr10	125780752	.	CGG	C,CG	2730.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.15;ReadPosRankSum=-0.125;SOR=2.687;set=HC	GT:AD:AF:DP	1/2:1,76,20:0.78,0.21:97
chr10	125798111	rs28375663	T	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:127,79:0.38:206
chr10	125801761	rs28698985	A	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr10	125801809	rs28716482	C	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr10	126086730	rs2459217	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	126089434	rs11461	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	126089656	rs2459215	T	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	126089703	rs2491158	G	A	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	126090562	rs2491159	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr10	126091765	rs11244715	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr10	126091802	rs11818278	G	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr10	126093991	rs9422807	T	C	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	126150324	.	T	C	56	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=56;QD=22.6928031368;SC=CCCGGTCTTCTTGCCCTGCCC;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=4;WE=126150332;WS=126150314;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chr10	126150411	rs141786334	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	126150523	rs75426652	C	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-1.607;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr10	126172644	rs3824811	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	126172863	rs6597801	A	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	126185451	rs10794134	T	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	126185618	rs3824810	A	G	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	126185707	rs3824809	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	126186771	rs17620824	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	126187385	.	G	GC	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=11.234;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=7.09;ReadPosRankSum=2.406;SOR=2.726;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr10	126205829	rs61738754	C	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:68,153:0.69:221
chr10	126395123	rs7897256	T	C	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	126471382	rs35267378	C	CA	350.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.436;QD=15.94;ReadPosRankSum=1.499;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr10	126480233	rs2277264	C	T	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:77,177:0.70:254
chr10	126480556	rs10901821	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	126505062	rs11451694	T	TA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.328;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr10	126629167	rs143159305	A	AT	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr10	126629204	rs7074163	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	126655377	.	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.583;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr10	126660781	rs3802700	A	T	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	126662451	rs3740534	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	126670356	rs17152433	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:107,55:0.34:162
chr10	126671673	rs2241541	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr10	126678122	rs140913543	GT	G	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=13.932;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-2.491;QD=4.71;ReadPosRankSum=-0.721;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr10	126678128	.	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=14.273;MLEAC=1;MLEAF=0.500;MQ=54.04;MQRankSum=-2.605;QD=4.67;ReadPosRankSum=-1.411;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr10	126686827	rs1982225	T	A	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	126692073	rs142637977	GA	G	2027.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr10	126692193	rs750599	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	126715075	rs3781413	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.937;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr10	126715136	rs7067816	C	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr10	126715154	rs3781412	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.534;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr10	126715159	.	A	AGCCGCAGGCTGGGGCTGCAGG	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-0.156;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr10	126715436	rs3781411	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:204,79:0.28:283
chr10	126727353	rs2289431	C	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.296;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	126727493	rs35631492	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr10	127349529	rs146024939	GAA	G	1677.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:127,50:0.28:177
chr10	127371357	rs12414666	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr10	127408527	rs74162846	G	C	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.069;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:112,47:0.30:159
chr10	127411788	rs76903239	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr10	127414473	.	T	TA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.206;QD=3.16;ReadPosRankSum=-1.524;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr10	127426357	rs3740182	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	127426588	rs3740180	C	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	127426835	rs3943225	G	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	127428901	rs2277211	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=-1.150;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	127430675	rs141738088	GT	G	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr10	127430968	rs77920264	C	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,72:0.67:108
chr10	127431018	rs75300277	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr10	127436411	rs2296832	T	C	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:86,153:0.64:239
chr10	127441573	rs10751530	G	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr10	127445122	rs80354925	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr10	127455993	rs28381320	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr10	127462525	rs10901425	A	G	13963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.616;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,542:1.00:543
chr10	127483396	rs150862450	T	TA	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.206;QD=7.45;ReadPosRankSum=0.623;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:22,37:0.63:59
chr10	127483573	rs3740179	G	A	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:40,110:0.73:150
chr10	127484617	rs2281955	C	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr10	127484653	rs2281954	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr10	127491732	rs74366862	CT	C	1241.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr10	127500718	rs10901444	C	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.468;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr10	127504660	rs2366044	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	127515069	rs10159992	C	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	127519381	rs115979128	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.712;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr10	127519387	rs116342748	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr10	127520029	rs144879420	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:108,58:0.35:166
chr10	127522572	rs3740206	T	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	127524612	rs4075326	C	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	127524905	rs78102986	A	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr10	127529438	rs34617890	T	G	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.375;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:55,80:0.59:135
chr10	127530325	rs3208565	T	C	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr10	127542732	rs143289913	T	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr10	127548587	rs1539315	C	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	127569075	rs7070216	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	127584978	rs5006357	A	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr10	127585015	rs79042596	G	T	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-9.230;QD=9.16;ReadPosRankSum=0.682;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:116,46:0.28:162
chr10	127585035	rs113524015	C	G	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=6.193;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-10.990;QD=6.65;ReadPosRankSum=2.727;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:167,46:0.22:213
chr10	127585040	rs5006358	G	A	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=10.427;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-11.545;QD=7.52;ReadPosRankSum=2.591;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:175,57:0.25:232
chr10	127585090	rs74635147	C	A	5011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.206;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-22.259;QD=9.15;ReadPosRankSum=-3.423;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:398,150:0.27:548
chr10	127585097	rs78188902	T	C	5257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.931;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-22.362;QD=9.22;ReadPosRankSum=-2.432;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:414,156:0.27:570
chr10	127585099	rs79920605	A	G	5244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.052;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-22.365;QD=9.28;ReadPosRankSum=-1.557;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:414,151:0.27:565
chr10	127585112	rs72832617	T	C	5402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-21.378;QD=9.53;ReadPosRankSum=0.900;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:408,159:0.28:567
chr10	127585120	rs80288044	G	C	5542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-20.848;QD=9.76;ReadPosRankSum=3.144;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:403,165:0.29:568
chr10	127585150	rs74162870	C	A	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:333,181:0.35:514
chr10	127585179	rs74162871	G	C	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:221,179:0.45:400
chr10	127585237	rs5013589	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-0.907;QD=3.10;ReadPosRankSum=-0.635;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:142,23:0.14:165
chr10	127585240	rs5013161	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.733;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=6.650;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-5.600;QD=3.15;ReadPosRankSum=1.508;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:135,25:0.16:160
chr10	127585263	rs5013162	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-3.253;QD=6.38;ReadPosRankSum=0.906;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr10	127585273	rs5013163	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.643;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-1.478;QD=3.72;ReadPosRankSum=1.389;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr10	127585288	rs5013590	C	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=9.718;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-0.939;QD=5.10;ReadPosRankSum=0.401;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:63,27:0.30:90
chr10	127585304	rs5013164	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=7.575;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-0.737;QD=1.85;ReadPosRankSum=0.162;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr10	127585307	rs74579856	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-1.063;QD=5.43;ReadPosRankSum=0.379;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr10	127585360	rs78190003	C	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.048;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-2.846;QD=14.49;ReadPosRankSum=-1.099;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	127585363	rs74162872	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-3.214;QD=15.70;ReadPosRankSum=-1.148;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	127668317	rs11244744	G	A	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,84:0.60:141
chr10	127668431	rs11244745	A	G	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:98,178:0.64:276
chr10	127668487	rs2176097	G	A	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:73,127:0.64:200
chr10	127668610	rs2138275	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr10	127668893	rs147745029	T	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.939;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:166,68:0.29:234
chr10	127677005	rs73370557	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.380;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr10	127677274	rs73370558	C	G	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.295;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:276,99:0.26:375
chr10	127677326	rs73370560	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:128,44:0.26:172
chr10	127677383	rs112595815	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr10	127684124	rs116737503	T	C	2141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.821;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:57,102:0.64:159
chr10	127685091	rs3736477	T	C	8874.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr10	127693432	rs2138283	C	T	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	127697165	rs2292690	T	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	127708091	rs2176099	AG	GT	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	127708428	rs2138280	A	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	127708468	rs35835884	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.228;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr10	127708503	rs2292694	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	127724778	rs1044122	A	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.465;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr10	127727768	rs1278255	A	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr10	127730728	rs34265990	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr10	127731850	rs1542460	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr10	127734486	rs1710312	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr10	127734513	rs1710313	A	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	127734644	rs115100580	T	C	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:97,206:0.68:303
chr10	127734776	rs1613306	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,46:0.34:135
chr10	127738280	rs199857907	AT	A	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr10	127753361	rs2279090	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr10	127753388	rs2279091	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.089;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:58,32:0.36:90
chr10	127753478	rs1278279	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,121:0.67:180
chr10	127755522	rs7084322	T	C	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.26;ReadPosRankSum=0.639;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr10	127755522	.	TTA	CTG	1164	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=27;MQ=60.0;NF=15;NR=21;PP=1164;QD=33.8185520795;SC=TTTCCGTCTGTTAGGAAAGCA;SbPval=0.48;Source=Platypus;TC=58;TCF=23;TCR=35;TR=36;WE=127755532;WS=127755512;set=Platypus	GT:AD:AF:DP	1/0:22,36:0.62:58
chr10	127755524	rs7080721	A	G	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.89;ReadPosRankSum=0.205;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr10	127755544	rs1278280	T	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	127786969	rs2290842	A	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	127787142	rs2290844	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	127789598	rs2290845	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	127797114	rs11244814	C	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr10	127824167	rs12098586	C	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	128147884	rs7077404	C	A	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	128148056	rs7098669	T	C	11247.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	128149910	rs148068454	A	ACTCCCTAGGAAATCT	2661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.25;ReadPosRankSum=0.987;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr10	128150096	rs12412320	G	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,40:0.32:126
chr10	128150206	rs17154818	G	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	128153428	rs74814928	G	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.736;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:143,52:0.27:195
chr10	128153623	rs7079392	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.476;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr10	128191222	rs61863954	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.563;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:86,17:0.17:103
chr10	128191368	rs10510159	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:82,34:0.29:116
chr10	128192593	rs114071782	A	T	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.885;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:52,96:0.65:148
chr10	128192985	rs11245007	C	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	128193368	rs11245008	C	T	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=10.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.197;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:134,153:0.53:287
chr10	128202435	rs1436803	T	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	128209769	rs2099552	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	128209797	rs2099553	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	128209959	rs4962342	G	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	128335225	rs2842149	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr10	128797717	rs2275540	T	C	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.121;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:251,122:0.33:373
chr10	128806787	rs79744236	C	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=-0.566;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	128810669	rs9418691	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:78,109:0.58:187
chr10	128821486	rs7087206	T	C	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:118,188:0.61:306
chr10	128821616	rs9418791	T	G	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:91,160:0.64:251
chr10	128821636	rs9418698	C	T	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:66,125:0.65:191
chr10	128822873	rs3818879	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr10	128830336	rs2275534	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr10	128836112	rs56038046	CT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=13.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=1.043;SOR=4.332;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr10	128836214	rs7085407	G	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	128840842	rs880272	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	128841570	rs882052	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=1.465;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	128850841	rs9418817	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	128859743	rs4751523	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	128908472	rs3740012	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:130,44:0.25:174
chr10	128923954	rs1186355	A	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:78,130:0.62:208
chr10	128925761	rs1153016	A	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr10	128926013	rs1060561	A	G	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.035;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:85,105:0.55:190
chr10	128944203	rs142252018	AG	A	3626.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	128952265	rs7068954	A	G	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	128974220	rs11594560	G	A	6167.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:152,296:0.66:448
chr10	128974716	rs2489384	A	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:141,64:0.31:205
chr10	129046407	rs3740013	T	C	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr10	129160313	rs2296636	C	T	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.724;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:32,71:0.69:103
chr10	129160458	rs2296635	G	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:95,67:0.41:162
chr10	129178348	rs61733301	T	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr10	129183002	rs878563	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	129183015	rs878562	T	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	129200964	rs11017876	G	A	14408.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,561:1.00:561
chr10	129202729	rs2296630	G	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	129207494	rs150283685	T	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:205,109:0.35:314
chr10	129207761	rs73388624	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	129208894	rs6482874	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr10	129213376	rs76870943	T	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:176,103:0.37:279
chr10	129213586	rs3736940	C	T	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr10	129213631	rs3736939	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	129249662	rs2229603	G	A	11049.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr10	129249676	rs2229604	C	T	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:306,174:0.36:480
chr10	129249701	rs2229606	C	G	13892.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr10	129249776	.	C	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.284;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=545.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=2.833;SOR=9.087;set=HC	GT:AD:AF:DP	0/1:289,93:0.24:382
chr10	129249777	.	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.211;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=543.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=2.833;SOR=9.065;set=HC	GT:AD:AF:DP	0/1:283,92:0.25:375
chr10	129347785	rs990310	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:201,81:0.29:282
chr10	129350641	rs4080381	C	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	129534478	rs147236104	A	AGCGCGGC	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	129534679	rs4751501	T	C	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	129534739	rs4751502	C	G	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:64,143:0.69:207
chr10	129534743	rs148992862	TTGGGAAAAGCGATGAC	T	2067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=1.732;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:165,62:0.27:227
chr10	129534864	rs4751503	A	C	7975.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:215,383:0.64:598
chr10	129534866	rs115312037	C	T	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:398,217:0.35:615
chr10	129535104	rs76070677	C	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr10	129536642	rs7085541	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=-0.283;SOR=2.891;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	129536648	rs7085544	G	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=0.146;SOR=3.209;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr10	129682249	rs10765177	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr10	129682311	rs7082389	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	129834422	rs10764738	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	129845547	rs4262642	A	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr10	129845826	rs61758317	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr10	129846010	rs7911904	G	A	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:123,206:0.63:329
chr10	129846916	rs115762819	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr10	129854369	rs4424589	T	C	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	129859061	rs28411949	T	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.25;SOR=2.368;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	129859065	rs11016046	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	129859992	rs4462251	T	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr10	129861497	rs56204987	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	129864515	rs10764743	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:124,61:0.33:185
chr10	129864619	rs116305750	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr10	129870510	rs41282874	A	G	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:309,150:0.33:459
chr10	129883370	rs1129205	A	G	16759.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.15;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr10	129883370	.	AGACTCTC	GGACTCTA,GGACTCTC	2343	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=22;MQ=59.98;NF=48,129;NR=43,140;PP=965,2343;QD=11.1919546688;SC=CCAGGACGCAAGACTCTCCCC;SbPval=0.36;Source=Platypus;TC=269;TCF=129;TCR=140;TR=91,269;WE=129883385;WS=129883360;set=Platypus	GT:AF:DP	0/1:0.34:269
chr10	129883377	rs7898794	C	A	2586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=3.299;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:341,160:0.32:501
chr10	129899578	rs8473	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:111,33:0.23:144
chr10	129899778	rs11106	G	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:194,102:0.34:296
chr10	129899922	rs34750407	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr10	129901393	rs11016071	T	C	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:114,85:0.43:199
chr10	129901570	rs11016072	C	T	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:179,118:0.40:297
chr10	129901722	rs10082432	G	A	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.486;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr10	129901726	rs10082533	C	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-1.493;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:81,35:0.30:116
chr10	129901825	rs10082391	T	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.275;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:199,109:0.35:308
chr10	129901946	rs1050767	T	G	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:201,118:0.37:319
chr10	129902158	rs12777740	C	T	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.187;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:233,101:0.30:334
chr10	129902281	rs1063535	G	A	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.037;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:181,73:0.29:254
chr10	129903016	rs7071768	T	C	2329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.649;QD=4.50;ReadPosRankSum=1.140;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:366,152:0.29:518
chr10	129903094	rs7083622	G	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.470;QD=3.71;ReadPosRankSum=-1.196;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:226,74:0.25:300
chr10	129904477	rs11591817	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:146,55:0.27:201
chr10	129904917	rs1894410	G	A	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:75,160:0.68:235
chr10	129906468	rs4750936	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:153,93:0.38:246
chr10	129907544	rs2240	G	C	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:273,120:0.31:393
chr10	129907741	rs2065718	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr10	129910344	rs114382167	T	C	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:51,119:0.70:170
chr10	129911856	rs11016076	C	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:80,49:0.38:129
chr10	129913960	rs7095325	A	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:94,44:0.32:138
chr10	131265665	rs16906255	T	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	131334789	rs10734087	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	131639306	rs10674137	T	TCCC	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr10	131641361	rs35210769	T	TG	1803.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr10	131755652	rs36101167	A	AT	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.684;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:120,47:0.28:167
chr10	131760352	rs573370	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	131905961	rs116704172	G	T	3969.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:86,184:0.68:270
chr10	131906326	rs61739077	A	G	7210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-1.958;QD=21.21;ReadPosRankSum=-0.533;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:157,183:0.54:340
chr10	131906326	.	ATC	GTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=15;MMLQ=24;MQ=58.66;NF=58;NR=40;PP=2944;QD=20;SC=TAATTTAAATATCCCTGATTC;SbPval=0.56;Source=Platypus;TC=178;TCF=104;TCR=74;TR=98;WE=131906336;WS=131906316;set=Platypus	GT:AD:AF:DP	0/1:80,98:0.55:178
chr10	131906328	rs61730402	C	G	7210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-2.052;QD=20.49;ReadPosRankSum=1.110;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:166,186:0.53:352
chr10	131934552	rs2274221	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	131934628	rs2274220	T	C	99.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	131943423	rs7073590	G	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	131943719	rs7922450	T	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	131958985	rs12245251	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr10	131967508	rs7082126	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.533;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	131967640	rs16910163	G	A	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:73,129:0.64:202
chr10	131973052	rs28548207	T	C	61.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	132915202	rs2298193	A	G	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:96,176:0.65:272
chr10	132961555	rs11416735	C	CA	1216.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	133109961	rs4993310	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	133607892	rs4897739	T	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	133607904	rs4897781	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr10	133607937	rs4897782	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.21;ReadPosRankSum=-1.839;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr10	133607947	rs4897740	T	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=0.262;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr10	133608210	rs4897741	A	G	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:58,134:0.70:192
chr10	133608237	rs4897783	G	A	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:66,149:0.69:215
chr10	133608291	rs4897742	TT	GG	5860.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	0/1:86,147:0.63:233
chr10	133608495	rs4897744	A	T	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,50:0.62:81
chr10	133754334	rs10870270	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr10	133769482	rs7894	G	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,73:0.57:128
chr10	133769568	rs11146336	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr10	133786586	rs1050704	T	C	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.234;QD=3.58;ReadPosRankSum=-0.531;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:202,68:0.25:270
chr10	133918372	rs10870252	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:128,104:0.45:232
chr10	133918466	rs10870253	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:159,72:0.31:231
chr10	133918567	rs12098286	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr10	133948456	rs2637643	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.474;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr10	133948634	rs2814182	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	133948689	rs2637644	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	133951501	rs57086821	CA	C	1902.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	133951704	.	CGTGCGGAGAGTACGCCGGGTGT	C	1220.73	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr10	133954011	rs2818387	C	T	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=2.243;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:57,112:0.66:169
chr10	133955569	rs5789117	C	CCG	5541.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	133955627	rs150681485	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr10	133958541	rs2637627	C	T	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	133967593	rs7906747	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr10	133981414	rs2637651	C	T	11659.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=45.55;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	133981422	rs2637650	C	T	12088.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=42.87;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	133981983	rs2814172	T	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	134000501	.	CCCCGCCCG	C	10214.73	.	AC=2;AF=1.00;AN=2;DP=263;set=Intersection	GT:AD:AF:DP	1/1:4,236:0.98:240
chr10	134008377	rs73399772	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:223,92:0.29:315
chr10	134008571	rs112825992	C	T	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr10	134010224	rs1552681	C	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	134010435	rs78726081	AG	A	8392.73	.	AC=1;AF=0.500;AN=2;DB;DP=421;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:147,261:0.64:408
chr10	134013990	rs2247705	G	A	23076.77	.	AC=2;AF=1.00;AN=2;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr10	134016115	rs2637629	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	134017206	rs111250186	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr10	134017295	rs12313	A	G	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	134017388	rs1052556	C	G	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:194,276:0.59:470
chr10	134021520	rs55869295	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr10	134021740	rs923659	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	134021810	rs923660	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	134036053	rs2814197	G	A	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.95;ReadPosRankSum=-0.891;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr10	134036057	rs2637635	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=0.912;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr10	134036073	rs2814196	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr10	134036193	rs2818401	A	G	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:137,229:0.63:366
chr10	134038715	rs902629	A	G	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	134039163	rs7916962	A	G	2624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.169;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:371,160:0.30:531
chr10	134059366	rs3829920	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:149,74:0.33:223
chr10	134137627	rs7914257	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr10	134143942	rs1052281	C	T	7356.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:155,355:0.70:510
chr10	134145314	rs11146335	A	G	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.40;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	134145314	.	ACCACCA	GCCACCA,GCCACCG	806	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=38,22;NR=62,33;PP=501,806;QD=5.35771212547;SC=TTGCCCGTCGACCACCACCCC;SbPval=0.54;Source=Platypus;TC=100;TCF=38;TCR=62;TR=100,55;WE=134145328;WS=134145304;set=Platypus	GT:AF:DP	0/1:1.00:100
chr10	134145320	rs147823719	A	G	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=2.007;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:74,112:0.60:186
chr10	134147341	rs12416634	T	A	110.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	134157875	rs2698779	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	134161633	rs2474328	A	G	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	134165291	rs2261222	C	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	134166273	rs72479351	A	G	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,86:0.71:121
chr10	134169142	rs74161795	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr10	134174781	rs76200325	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	134180248	rs10870299	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr10	134210667	.	CCGGCGG	C	951.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=41.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	134218269	rs11146363	C	T	5621.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:101,253:0.71:354
chr10	134218296	rs10747057	C	G	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-1.010;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:236,103:0.30:339
chr10	134219291	rs139452616	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:63,138:0.69:201
chr10	134237193	.	GTGTGTGTGTGGCTGTGTGTGTGGCTGTGTGTGTGTGGCTGTGTGTGTGTGTGTGGC	G	554.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=12.990;MLEAC=1;MLEAF=0.500;MQ=62.33;MQRankSum=-0.964;QD=9.09;ReadPosRankSum=-2.018;SOR=2.335;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr10	134237249	.	C	CTGTGTGTGTGGCTGTG	815.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=12.426;MLEAC=1;MLEAF=0.500;MQ=62.57;MQRankSum=2.376;QD=15.99;ReadPosRankSum=2.589;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	134237425	rs1574448	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr10	134239228	rs12775406	T	C	7843.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=33.38;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	134239228	.	TGTGCGCG	CGTGCGCA,CGTGCGCG	1216	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=59.22;NF=24,46;NR=52,78;PP=1216,430;QD=16.7035246692;SC=TGTACCCACGTGTGCGCGTGC;SbPval=0.76;Source=Platypus;TC=125;TCF=46;TCR=79;TR=76,124;WE=134239243;WS=134239218;set=Platypus	GT:AF:DP	0/1:0.61:125
chr10	134239235	.	G	A	2622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=1.843;QD=12.79;ReadPosRankSum=1.484;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:77,128:0.62:205
chr10	134351642	rs183215914	G	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.973;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr10	134459388	rs1133400	A	G	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:54,100:0.65:154
chr10	134540331	rs33999092	T	C	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.514;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:110,33:0.23:143
chr10	134540388	rs34902202	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.634;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr10	134540511	rs111584265	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	134598628	rs2804003	A	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	134622408	rs2767434	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	134622507	rs2767431	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	134623959	rs2254419	T	C	8805.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	134624626	rs11146527	C	T	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	134627593	rs11146529	G	A	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	134627882	rs7070307	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	134647453	rs3750583	C	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	134648034	rs11146535	C	T	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	134648336	rs7095544	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	134650251	rs7915312	G	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	134660951	rs2892211	A	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	134664875	rs7913626	A	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr10	134671094	rs73391289	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr10	134674442	rs12249250	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.197;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr10	134674600	rs73391300	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr10	134680921	rs141926275	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=1.309;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr10	134681120	rs12258405	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.538;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr10	134682701	rs12785166	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	134682795	rs116808143	G	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr10	134682934	rs73393227	C	T	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,107:0.52:207
chr10	134705996	rs137890417	C	G	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.975;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:214,79:0.27:293
chr10	134713159	rs138173942	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:216,107:0.33:323
chr10	134713265	rs138315034	TG	T	2137.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr10	134722022	rs7075277	A	G	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr10	134722149	rs142382704	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr10	134723390	rs10870353	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	134723394	rs11146582	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	134726046	rs139520899	T	TCTCTCTCTCTCTTCAC	1085.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	134726108	.	CCTCTCTCT	C,CCT	3392.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.96;QD=33.59;SOR=0.757;set=HC	GT:AD:AF:DP	1/2:2,16,83:0.16,0.82:101
chr10	134726864	rs11146591	A	G	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	134726878	rs147252000	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,33:0.30:110
chr10	134732095	rs11146033	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:83,53:0.39:136
chr10	134733109	rs34347971	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	134733482	rs112096435	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr10	134733644	rs149558193	G	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:319,139:0.30:458
chr10	134733813	rs143839579	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr10	134735523	rs114438112	T	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	134735672	rs7915371	A	G	3015.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=1.234;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:2,121:0.98:123
chr10	134736076	rs4880288	T	G	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	134738232	rs4075501	A	G	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	134738439	rs146896789	C	CG	2283.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,82:0.68:120
chr10	134740264	rs148161500	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr10	134740365	rs10781544	T	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr10	134740670	rs115634014	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr10	134741099	rs11146048	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	134750604	rs10870211	C	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	134752007	rs60993054	TC	T	607.74	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr10	134752287	rs12247654	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr10	134755298	rs4880292	C	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	134755852	rs56100128	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	134755860	.	T	TCCGGGGCCTCCCCGGGGCGGGGATCGTGGCGGGTC	948.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.81;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	134756013	rs7898115	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	134884516	rs4271312	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:157,81:0.34:238
chr10	134884535	rs74161994	G	T	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:73,160:0.69:233
chr10	134884546	rs4576736	A	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:156,74:0.32:230
chr10	134884595	rs4271313	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,70:0.34:205
chr10	134884610	rs4486541	C	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:140,76:0.35:216
chr10	134884755	rs11101751	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,53:0.35:153
chr10	134885677	rs7069085	A	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	134886618	rs4838684	G	C	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.502;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:87,80:0.48:167
chr10	134893769	rs56411752	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr10	134895521	rs111933943	T	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.64;ReadPosRankSum=-2.173;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr10	134895526	rs202084926	TC	T	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=-1.756;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr10	134895530	rs34883766	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=-1.383;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr10	134898594	rs4838694	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	134902314	rs10745302	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	134902396	rs10776692	C	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.809;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr10	134902396	.	CGC	GGT	112	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=11;NR=4;PP=112;QD=11.0311916575;SC=CTCACGCTTCCGCAACTTTGC;SbPval=0.74;Source=Platypus;TC=53;TCF=36;TCR=17;TR=15;WE=134902406;WS=134902386;set=Platypus	GT:AD:AF:DP	0/1:38,15:0.28:53
chr10	134902398	rs10776693	C	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	134906343	.	G	GGGAAGGAAGGAA	383.74	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=76.75;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	134906668	rs113910052	G	A	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:146,205:0.58:351
chr10	134910629	rs11101914	G	A	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:137,69:0.33:206
chr10	134912198	rs9419100	C	T	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:135,174:0.56:309
chr10	134915832	rs9419103	C	T	4424.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:135,212:0.61:347
chr10	134915993	rs7905581	G	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	134916121	rs7918862	T	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	134916366	rs12219529	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:95,45:0.32:140
chr10	134940724	rs115735367	T	G	2771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=0.203;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:67,129:0.66:196
chr10	134940862	rs11101942	A	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.303;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:190,70:0.27:260
chr10	134942166	rs2806452	A	G	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	134942340	rs10776696	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:284,103:0.27:387
chr10	134942832	rs45586231	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:125,62:0.33:187
chr10	134943085	rs73399158	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr10	134974187	rs56406605	A	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	134981690	rs2998152	T	C	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	134981837	rs2998151	T	C	10528.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr10	134981942	rs3008303	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	134999397	.	TGGGAGGAGAGGGGAGGGGC	T	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.389;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr10	134999602	rs3008393	G	C	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:68,120:0.64:188
chr10	135002218	rs187764020	C	T	2265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=12.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.68;ReadPosRankSum=-1.278;SOR=0.040;set=HC	GT:AD:AF:DP	0/1:18,61:0.77:79
chr10	135002223	rs191378374	G	A	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=12.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.91;ReadPosRankSum=-0.985;SOR=0.044;set=HC	GT:AD:AF:DP	0/1:17,56:0.77:73
chr10	135002233	.	ACCCCCGCCGTCC	A	1812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=5.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-0.844;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:17,47:0.73:64
chr10	135002250	.	CCCCACA	C	1489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.64;ReadPosRankSum=0.391;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr10	135002259	.	GTCCCACGCCCCCCCA	G	1418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.47;ReadPosRankSum=-1.936;SOR=3.070;set=HC	GT:AD:AF:DP	0/1:5,35:0.88:40
chr10	135012162	rs2998139	T	C	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:43,92:0.68:135
chr10	135012430	rs3008389	T	C	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=0.528;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:108,207:0.66:315
chr10	135012489	rs113502632	G	A	6264.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:126,288:0.70:414
chr10	135013871	rs62623421	G	A	5892.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:134,289:0.68:423
chr10	135015127	rs35604376	A	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:117,56:0.32:173
chr10	135015427	rs9418941	C	A	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:98,153:0.61:251
chr10	135015756	rs11817328	G	A	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:128,231:0.64:359
chr10	135016089	rs3008386	T	C	7777.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:195,365:0.65:560
chr10	135016175	rs3008385	T	G	6771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.922;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:175,330:0.65:505
chr10	135020315	rs3008375	T	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:46,97:0.68:143
chr10	135024097	rs12247954	G	A	6282.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:125,275:0.69:400
chr10	135026334	.	G	A	6911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=0.813;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:140,336:0.71:476
chr10	135038128	rs11101648	G	A	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:71,128:0.64:199
chr10	135043802	rs7092433	C	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.567;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr10	135044453	rs7081620	C	T	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=1.033;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:46,96:0.68:142
chr10	135044630	rs188687239	G	A	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:46,169:0.79:215
chr10	135051543	rs2240892	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=0.463;QD=2.90;ReadPosRankSum=-0.007;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr10	135051562	rs2998143	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=24.02;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	135051653	rs2240891	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr10	135051678	rs76544574	G	A	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr10	135053877	rs112263035	AGTT	A	775.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr10	135060926	rs3008372	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	135076523	rs2995300	C	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	135076758	rs3008318	T	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	135076903	rs3121298	A	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	135077121	rs3216041	C	CGTCAGCCCCGTGGGGAGGCCGTGCCACT,CGTGCCACT	736.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:7
chr10	135077265	rs3008319	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	135077311	rs2995301	C	G	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	135080826	rs2860375	A	C	9510.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	135081684	rs2995309	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	135082810	rs2995310	C	T	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	135082874	rs2995311	G	A	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	135083164	rs2275719	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	135083812	rs885023	C	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	135084232	rs5789159	C	CAGA	4669.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	135084322	rs3008321	A	G	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr10	135084601	rs2995314	T	C	10805.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr10	135085321	rs1131720	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.33;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	135085426	rs1131719	A	G	11101.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr10	135085754	rs1131718	G	A	17801.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr10	135086380	rs3008324	C	T	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	135087521	rs3008326	G	A	11373.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	135089035	rs2275725	A	G	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	135090183	rs2995317	A	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	135090264	rs200740783	G	GC	5283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.24;ReadPosRankSum=2.309;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:111,150:0.57:261
chr10	135096784	rs2995325	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	135097224	rs56403249	T	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=45.64;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	135097227	.	CGCA	C	1222.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=43.67;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	135097232	.	T	TCG	1225.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=43.78;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	135097434	rs2995326	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	135098672	rs3008334	G	A	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	135098830	rs3008335	T	C	12061.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	135098845	rs2995327	C	T	11849.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr10	135103315	.	C	CGCTGCGCCAAGGACCCCAGGTCCCTGCCT	3132.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.23;QD=82.44;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	135105879	.	C	CT	299	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=4;HapScore=4;MGOF=146;MMLQ=24;MQ=45.09;NF=12;NR=1;PP=299;QD=24.6153846154;SC=CTCCGTGTCCCCCGTGTCCCC;SbPval=0.58;Source=Platypus;TC=15;TCF=14;TCR=1;TR=13;WE=135105889;WS=135105874;set=Platypus	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	135105881	.	C	T	285	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=4;HapScore=4;MGOF=146;MMLQ=27;MQ=45.99;NF=7;NR=0;PP=285;QD=45.6816017925;SC=CCGTGTCCCCCGTGTCCCCGT;SbPval=1.0;Source=Platypus;TC=20;TCF=17;TCR=3;TR=7;WE=135105889;WS=135105874;set=Platypus	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	135105932	.	ACA	GCC	850	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=4;MGOF=237;MMLQ=24;MQ=57.46;NF=18;NR=6;PP=850;QD=37.6444947859;SC=GGCAGCATGCACACTCCGTGT;SbPval=0.85;Source=Platypus;TC=72;TCF=47;TCR=25;TR=24;WE=135105943;WS=135105919;set=Platypus	GT:AD:AF:DP	0/1:48,24:0.33:72
chr10	135105962	.	CCCCGTGTCCCTCCGTGT	C	1816	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=1;MGOF=41;MMLQ=24;MQ=58.86;NF=22;NR=41;PP=1816;QD=29.1746031746;SC=CCCTCCGTGTCCCCGTGTCCC;SbPval=0.76;Source=Platypus;TC=77;TCF=31;TCR=46;TR=63;WE=135105987;WS=135105951;set=Platypus	GT:AD:AF:DP	0/1:14,63:0.82:77
chr10	135105964	.	CCGTGTCCCT	C	2976	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=1;MGOF=50;MMLQ=24;MQ=58.7;NF=25;NR=42;PP=2976;QD=20;SC=CTCCGTGTCCCCGTGTCCCTC;SbPval=0.54;Source=Platypus;TC=69;TCF=26;TCR=43;TR=67;WE=135105987;WS=135105951;set=Platypus	GT:AD:AF:DP	0/1:2,67:0.97:69
chr10	135107301	rs2860672	T	C	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	135137997	.	GC	G	2199.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr10	135137999	.	T	G	2208.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr10	135139834	rs144848884	C	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:36,98:0.73:134
chr10	135141572	rs2298122	G	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.123;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:102,33:0.24:135
chr10	135160950	rs4838721	C	T	2955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.431;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:351,178:0.34:529
chr10	135163534	rs145120134	T	TGCTGCCTGGAGTTCAGGGC	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.614;QD=4.04;ReadPosRankSum=0.290;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:80,12:0.13:92
chr10	135163799	rs55708721	C	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,79:0.42:190
chr10	135164799	rs79130099	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:137,80:0.37:217
chr10	135165623	rs34780987	G	A	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.726;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:275,135:0.33:410
chr10	135165790	rs4369319	A	G	10478.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr10	135168986	rs77880897	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr10	135169204	rs74164154	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr10	135170788	rs41317286	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:242,113:0.32:355
chr10	135170886	rs79972650	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:139,86:0.38:225
chr10	135171364	rs1891372	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr10	135171516	rs146000004	C	A	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.071;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:71,48:0.40:119
chr10	135179458	rs6537598	G	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:109,67:0.38:176
chr10	135179696	.	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.310;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr10	135180283	.	G	GT	244	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=4;HapScore=1;MGOF=22;MMLQ=28;MQ=58.39;NF=1;NR=2;PP=244;QD=102.61525349;SC=ATGCTGCCCCGGGTTTCTGTG;SbPval=0.82;Source=Platypus;TC=18;TCF=8;TCR=10;TR=3;WE=135180291;WS=135180267;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr10	135180562	rs60958182	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:61,17:0.22:78
chr10	135183608	rs73390179	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr10	135184122	rs2230260	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:127,69:0.35:196
chr10	135186664	rs150493267	AG	A	664.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr10	135202594	rs10776679	T	C	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.614;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:138,73:0.35:211
chr10	135202927	rs79789883	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr10	135204799	rs6537600	C	T	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr10	135204950	rs1046175	C	G	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	135205009	rs1046178	C	G	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	135207936	rs10160083	T	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	135209105	rs4838742	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	135211892	rs2252852	A	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	135212160	rs77791987	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr10	135215756	rs145673810	CGGGGCT	C	5191.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr10	135216331	rs61001086	TA	T	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.950;QD=6.02;ReadPosRankSum=0.712;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:53,49:0.48:102
chr10	135233541	rs2255246	A	G	16083.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr10	135236717	rs114544949	A	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr10	135237060	rs2480253	A	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	135267445	rs2253522	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr10	135267738	rs2253529	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.357;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr10	135269694	rs12247319	G	A	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:107,224:0.68:331
chr10	135270837	rs144029024	TC	T	1106.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr10	135271130	rs10466128	C	T	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:66,145:0.69:211
chr10	135271789	rs2480245	C	T	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr10	135273463	rs731947	C	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr10	135278193	rs2492654	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	135278244	rs111769579	CTGGGGTG	C	3699.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;MQ=60.74;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr10	135279283	rs2243812	T	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr10	135279810	rs2243909	T	G	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	135279977	rs114776797	G	A	2886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=1.680;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:30,74:0.71:104
chr10	135279983	rs78567575	C	T	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.06;ReadPosRankSum=0.854;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:26,69:0.73:95
chr10	135280765	rs2246634	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	135281302	rs114023272	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr10	135281637	rs10776682	A	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr10	135281651	rs116419726	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.248;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	135340866	rs11445593	T	TC	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr10	135345393	rs9919378	G	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr10	135345603	rs9919386	G	A	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:225,105:0.32:330
chr10	135345675	rs6413419	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:205,93:0.31:298
chr10	135347397	rs915909	T	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:121,79:0.40:200
chr10	135347533	rs943976	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	135350480	rs115499725	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-2.555;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	135369392	rs7918730	G	A	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:118,205:0.63:323
chr10	135381215	rs3020499	A	G	103.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	135381276	rs3020500	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr10	135381449	.	A	G	419.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr10	135381623	rs3020502	T	C	14912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.588;QD=30.07;ReadPosRankSum=-0.017;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:129,367:0.74:496
chr10	135381630	rs142856797	G	A	15195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.580;QD=29.56;ReadPosRankSum=-1.069;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:131,383:0.75:514
chr10	135381766	rs3020503	C	T	9728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=19.753;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.780;QD=30.88;ReadPosRankSum=-0.071;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:74,241:0.77:315
chr10	135381769	rs188096997	G	C	9736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=16.613;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.776;QD=31.11;ReadPosRankSum=-0.515;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:73,240:0.77:313
chr10	135381927	rs2987800	T	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr10	135438810	.	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=10.750;MLEAC=1;MLEAF=0.500;MQ=44.28;MQRankSum=-5.283;QD=3.99;ReadPosRankSum=-1.033;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr10	135438834	rs374581917	A	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.315;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=20.415;MLEAC=1;MLEAF=0.500;MQ=45.80;MQRankSum=-6.761;QD=3.44;ReadPosRankSum=-0.029;SOR=3.403;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr10	135438888	rs150376644	C	T	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=-7.751;QD=12.22;ReadPosRankSum=-4.825;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:150,206:0.58:356
chr10	135438929	rs201901202	T	G	5892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=51.08;MQRankSum=-15.147;QD=11.79;ReadPosRankSum=3.613;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:215,285:0.57:500
chr10	135438951	rs200483318	G	A	11808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.766;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=51.78;MQRankSum=-17.015;QD=22.20;ReadPosRankSum=2.239;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:227,305:0.57:532
chr10	135438955	rs201563622	C	T	11687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.539;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-16.952;QD=22.92;ReadPosRankSum=1.848;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:219,291:0.57:510
chr10	135438967	rs145018822	C	T	9680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-17.319;QD=20.17;ReadPosRankSum=1.655;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:220,260:0.54:480
chr10	135438977	rs79631365	G	A	9187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-18.574;QD=20.46;ReadPosRankSum=0.840;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:215,234:0.52:449
chr10	135439049	rs200347477	G	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:189,50:0.21:239
chr10	135439079	rs201410894	A	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.095;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=21.679;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-5.736;QD=0.80;ReadPosRankSum=-5.810;SOR=4.336;set=HC	GT:AD:AF:DP	0/1:129,11:0.08:140
chr10	135439196	rs141975116	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=9.979;MLEAC=1;MLEAF=0.500;MQ=43.55;MQRankSum=-0.567;QD=1.67;ReadPosRankSum=1.151;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr10	135439220	rs138977113	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=44.50;MQRankSum=-2.319;QD=3.65;ReadPosRankSum=-0.072;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	135439300	rs200952781	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=44.78;MQRankSum=-2.369;QD=5.22;ReadPosRankSum=-0.592;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	135439925	rs140362508	G	A	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.81;MQRankSum=-0.967;QD=10.26;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr11	193146	rs61736219	G	A	2861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.898;QD=8.25;ReadPosRankSum=0.744;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:191,156:0.45:347
chr11	193194	rs2686896	T	C	1818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-1.290;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:117,110:0.48:227
chr11	193863	rs2294081	T	C	4295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.204;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:140,116:0.45:256
chr11	193863	.	TAT	CAG	1760	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=22;MQ=59.91;NF=32;NR=29;PP=1760;QD=29.7289815551;SC=TCAAGTCCTGTATAGATGGCC;SbPval=0.44;Source=Platypus;TC=130;TCF=64;TCR=66;TR=61;WE=193873;WS=193853;set=Platypus	GT:AD:AF:DP	1/0:69,61:0.47:130
chr11	193865	rs2686894	T	G	4246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=0.530;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:142,114:0.45:256
chr11	193979	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	194332	.	C	CA	1569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.103;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:53,54:0.50:107
chr11	194640	rs2979429	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr11	218640	rs535716	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	218906	rs3020901	C	T	10425.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr11	223868	.	A	G	894	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=27;MQ=58.07;NF=9;NR=38;PP=894;QD=19.7610896287;SC=AGCCCATGAGATGACTCCTGT;SbPval=0.54;Source=Platypus;TC=52;TCF=10;TCR=42;TR=47;WE=223876;WS=223858;set=Platypus	GT:AD:AF:DP	1/1:5,47:0.90:52
chr11	233301	rs542641	G	A	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	235894	rs9795476	T	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	236306	rs2974901	G	A	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	236343	rs7118852	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	236370	.	C	CCGGCGCCCCGCCCG	649.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.58;QD=40.61;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	236871	rs2272563	T	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	237087	rs1045288	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	243987	rs6598060	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	244106	rs10902112	A	G	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	244108	rs7107362	A	G	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	244115	rs7128044	G	A	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	244129	rs7116130	C	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	244141	rs7128029	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr11	244167	rs1128320	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	244171	rs1128321	T	C	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	244197	rs1128322	T	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	244414	rs2272565	C	T	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	244490	rs3830667	ATACCTTTTAG	A	6424.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr11	244552	rs2272566	A	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	247200	rs3830001	G	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	252649	rs6540	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	279278	.	G	A	56	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=4;HapScore=2;MGOF=98;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=56;QD=45.3856062736;SC=GGGCGGGCGGGGGTCACCCGA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=279286;WS=279268;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	280221	rs6421985	A	C	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	280294	rs76744706	G	A	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	280816	rs7482965	AT	TC	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	284299	rs7108261	A	G	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr11	284538	rs6598047	T	C	10360.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr11	284716	rs760059	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	290158	rs3809107	C	T	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	290199	rs3809108	G	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	290816	rs10902120	A	G	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	290891	rs72636977	T	C	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	290918	rs72636978	G	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	292805	rs11246056	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	293188	rs12801980	T	C	7958.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.26;ReadPosRankSum=1.401;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:2,326:0.99:328
chr11	294512	rs149098966	A	ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC	3760.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.82;QD=76.75;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	299411	rs57285449	C	G	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	308065	rs9704108	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	308290	rs1058900	T	C	9549.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	308314	rs14408	T	C	8111.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	308363	rs1058935	G	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	308426	rs1058964	G	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	314207	rs9667990	C	G	11845.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:1,451:1.00:452
chr11	320166	rs28655829	T	C	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.41;QD=24.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	320237	rs28688930	C	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.87;QD=26.80;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	373137	rs116005810	C	T	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:2,407:1.00:409
chr11	373408	.	ACC	A,AC	3661.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.399;QD=23.78;ReadPosRankSum=-0.599;SOR=0.847;set=HC	GT:AD:AF:DP	1/2:7,21,126:0.14,0.82:154
chr11	396701	rs11246147	C	T	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	396915	rs12419281	C	T	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	397706	rs9795298	T	C	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	397732	rs9795299	T	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	400109	rs8858	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	403030	.	CCCGACCCG	C	1516.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.96;QD=37.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	403040	.	TCACCCC	T	1517.73	.	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=32.99;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	403046	.	C	T	820	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=3;HapScore=1;MGOF=92;MMLQ=24;MQ=60.05;NF=24;NR=7;PP=820;QD=27.5732649209;SC=CCGCTCACCCCGACCCCGCCG;SbPval=0.49;Source=Platypus;TC=33;TCF=26;TCR=7;TR=31;WE=403054;WS=403036;set=Platypus	GT:AD:AF:DP	1/1:2,31:0.94:33
chr11	403939	rs7479832	A	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	403980	rs11748	G	A	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	404317	rs1134578	C	T	8392.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr11	406043	rs7947	G	A	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	406473	rs3087588	A	C	9845.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	406483	rs3210908	T	C	9451.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	407236	rs7395890	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	407366	.	T	TGGGATGGGGC	1220.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=46.95;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	407708	rs6421977	A	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	409385	rs6421976	C	G	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	409720	rs6598024	T	G	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	428385	rs10794323	A	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	428489	rs10794324	T	C	6826.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	429659	rs7111432	C	T	13792.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	430456	rs11603743	A	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	431577	.	T	A	110	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=4;HapScore=2;MGOF=85;MMLQ=24;MQ=54.27;NF=7;NR=1;PP=110;QD=18.0964015684;SC=GTGTGGGGGCTCCCGCGGGTA;SbPval=0.95;Source=Platypus;TC=12;TCF=8;TCR=4;TR=8;WE=431585;WS=431573;set=Platypus	GT:AD:AF:DP	1/1:4,8:0.67:12
chr11	431622	.	C	T	486	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=4;HapScore=1;MGOF=70;MMLQ=19;MQ=59.6;NF=19;NR=11;PP=486;QD=17.3590404182;SC=GGGGCGTCCGCGGGTATCTGG;SbPval=0.56;Source=Platypus;TC=30;TCF=19;TCR=11;TR=30;WE=431630;WS=431612;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	431834	rs55914928	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	433387	rs7395065	A	G	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	433554	rs12576389	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	433568	rs7396813	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	433867	rs12575508	G	A	7501.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	433965	rs7396778	G	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	433995	rs7396776	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	460303	rs11821341	T	C	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	474033	rs72851118	C	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	486826	rs55653405	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=44.03;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	486835	rs55976759	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=50.18;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	486843	rs56352613	A	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=46.37;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	486855	rs55961417	T	A	905.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=1.975;QD=18.49;ReadPosRankSum=-0.794;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:5,44:0.90:49
chr11	486874	rs55830538	T	C	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	488070	.	C	T	255	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=2;MGOF=114;MMLQ=22;MQ=59.53;NF=12;NR=2;PP=255;QD=20.6979437534;SC=TGCACGCACCCGTGGGCAGGG;SbPval=0.61;Source=Platypus;TC=14;TCF=12;TCR=2;TR=14;WE=488078;WS=488060;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	488135	rs11820122	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.61;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	488140	rs11821959	C	T	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=43.23;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	488389	rs11822000	C	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	489386	rs67492572	T	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	489829	rs56005321	C	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	494942	rs7983	G	C	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	495103	rs11246165	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	498383	rs11825121	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	499059	rs17584	C	T	12391.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,480:1.00:481
chr11	499547	rs61876345	A	C	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	499583	rs61876346	G	A	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	500056	rs12417451	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	502013	rs7930593	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	502217	rs7944548	C	T	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	534242	rs12628	A	G	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr11	534403	rs146677294	GCCCAGGCCCAGC	G	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	552875	rs28575794	A	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	554354	rs115366880	T	A	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	555157	.	G	GGGAGGGGAGGGGAGCGGCGA	963.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr11	555223	rs55731724	AC	A	809.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.56;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	556976	rs148396909	C	T	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	606656	rs936470	G	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	610277	rs11246212	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	614864	rs1061501	C	T	15712.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,615:1.00:615
chr11	616970	rs1610161	A	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	617537	rs2740380	C	T	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	617967	rs2740379	C	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	618172	rs6598008	A	G	8633.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	618998	rs2740375	G	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	619789	rs2246614	T	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	636496	rs936461	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	636689	rs747302	G	C	3244.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=44.45;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	636689	.	GG	CA	1627	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=62;MMLQ=27;MQ=59.52;NF=17;NR=24;PP=1627;QD=40.9870213381;SC=GGGGGCTGAGGGCCAGAGGCT;SbPval=0.51;Source=Platypus;TC=42;TCF=17;TCR=25;TR=41;WE=636711;WS=636679;set=Platypus	GT:AD:AF:DP	1/1:1,41:0.98:42
chr11	636690	rs936462	G	A	3244.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=43.85;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	636701	rs3842250	CG	C	2812.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	636703	rs2396543	G	T	2821.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	636784	rs1800955	T	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	639374	rs28540443	C	G	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:3,106:0.97:109
chr11	639830	rs1800443	T	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	640119	rs762502	C	T	1364.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=0.000;QD=23.13;ReadPosRankSum=1.698;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,58:0.98:59
chr11	640305	rs201878429	C	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr11	640742	rs372134586	TG	T	703.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	651414	.	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=0.412;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr11	651491	rs11246240	C	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	653968	rs10615	T	C	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	654109	rs7109899	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	654147	rs7106020	T	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.17;QD=36.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	654162	.	CCCCT	C	366.74	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.83;QD=52.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	654511	rs7951023	G	A	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	674454	rs11246258	G	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	700843	rs114203107	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	704753	rs7941896	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	709680	rs11605783	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	710558	rs7395822	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	710567	rs7396652	A	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	720197	rs3087546	C	T	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	723429	rs4078520	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	726031	rs189899012	G	A	2253.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=11.703;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=1.933;SOR=5.279;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr11	726178	rs28498399	G	C	9862.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.30;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	763297	rs61876727	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	764854	rs7939103	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	771226	rs114632705	A	C	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	771248	rs116697492	G	A	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	771471	rs113697813	C	T	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	772319	.	G	C	65.77	.	AC=1;AF=0.500;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	0/1:23,104:0.82:127
chr11	772403	rs143506964	G	C	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:190,118:0.38:308
chr11	772419	rs12799925	A	G	4674.85	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:192,118:0.38:310
chr11	775275	rs7942564	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	799670	rs28649421	G	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	800414	rs115173419	G	A	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	800485	rs7121646	TC	AT	17793.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	801644	rs113521642	A	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	802115	rs7479101	A	G	17919.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	802125	rs28498421	T	C	17899.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr11	802902	rs28360884	T	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	822622	rs7942159	A	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	824789	rs1138693	T	C	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	824805	rs1138694	C	T	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	824987	rs66460720	CTGCA	C	9927.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr11	828784	rs28507876	A	G	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	836023	rs28475448	C	T	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	836227	rs28434354	A	G	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	836539	rs56063221	TG	T	3287.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chr11	842653	rs35249369	C	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	849090	rs28402197	C	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	850170	rs28704105	T	G	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	862652	rs28505621	T	C	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	864626	rs28377158	A	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	865447	rs28423070	G	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	865503	rs28581489	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	866044	rs28457111	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	866183	rs28439203	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	866498	rs28663055	T	C	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	870446	rs6682	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	900894	rs28454252	T	G	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	900929	rs10794339	C	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	902116	.	TCA	T	35	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=35;QD=24.0;SC=ACATACCTACTCACACACACA;SbPval=0.26;Source=Platypus;TC=16;TCF=8;TCR=8;TR=2;WE=902125;WS=902106;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr11	903070	rs28380110	G	C	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	985658	rs113145587	G	A	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	993462	rs111630060	C	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	993745	rs7104956	C	G	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	993907	rs11538725	C	G	15337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.91;ReadPosRankSum=2.055;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:2,590:1.00:592
chr11	1009596	.	A	C	38.74	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	1010421	rs78408613	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	1016704	rs75826443	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=5.054;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-6.320;QD=0.50;ReadPosRankSum=0.718;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:283,26:0.08:309
chr11	1016713	rs76406481	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=4.970;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.513;QD=0.68;ReadPosRankSum=-0.829;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:267,28:0.09:295
chr11	1016724	rs3208810	A	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=6.613;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-8.219;QD=0.61;ReadPosRankSum=-1.631;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:260,26:0.09:286
chr11	1016776	rs33988517	C	T	5640.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:329,242:0.42:571
chr11	1016800	rs199626069	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-2.997;QD=0.68;ReadPosRankSum=2.230;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:913,83:0.08:996
chr11	1016833	.	G	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DP=1312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-12.898;QD=1.00;ReadPosRankSum=-0.174;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:1176,123:0.09:1299
chr11	1016834	rs34740154	G	A	10286.77	.	AC=1;AF=0.500;AN=2;DB;DP=1317;set=Intersection	GT:AD:AF:DP	0/1:829,475:0.36:1304
chr11	1016869	rs35469308	A	T	18260.77	.	AC=1;AF=0.500;AN=2;DB;DP=1373;set=Intersection	GT:AD:AF:DP	0/1:623,582:0.48:1205
chr11	1016890	rs113508205	G	A	16490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=1152;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-3.969;QD=14.95;ReadPosRankSum=6.885;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:634,469:0.43:1103
chr11	1016892	rs78784632	G	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=1135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-0.791;QD=0.79;ReadPosRankSum=-1.739;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:1002,93:0.08:1095
chr11	1016894	rs34281988	G	A	13119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=1125;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=2.298;QD=12.24;ReadPosRankSum=-4.949;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:714,358:0.33:1072
chr11	1016908	rs79018624	G	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-3.606;QD=0.90;ReadPosRankSum=-0.225;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:919,83:0.08:1002
chr11	1016910	rs113559934	G	A	4700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=1.773;QD=4.80;ReadPosRankSum=-2.420;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:795,185:0.19:980
chr11	1016914	rs74632841	G	T	14084.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:570,376:0.40:946
chr11	1016918	rs34375705	C	T	2571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=1.751;QD=2.78;ReadPosRankSum=-1.664;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:801,124:0.13:925
chr11	1016928	rs34053383	C	G	29564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-5.048;QD=34.22;ReadPosRankSum=-0.333;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:161,703:0.81:864
chr11	1016928	.	CTGGCC	GTGGCC,GTGGCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=121;MMLQ=27;MQ=54.06;NF=334,137;NR=415,190;PP=2962,2944;QD=20;SC=CCTGCTGCTGCTGGCCGAGGT;SbPval=0.54;Source=Platypus;TC=831;TCF=373;TCR=458;TR=749,327;WE=1016942;WS=1016900;set=Platypus	GT:AF:DP	0/1:0.90:831
chr11	1016933	rs199579978	C	T	12517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=0.413;QD=14.81;ReadPosRankSum=0.473;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:517,328:0.39:845
chr11	1016934	.	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=860;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-7.789;QD=0.55;ReadPosRankSum=2.627;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:777,68:0.08:845
chr11	1016957	rs200695483	T	G	10937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=7.319;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-6.461;QD=15.85;ReadPosRankSum=1.215;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:437,253:0.37:690
chr11	1016959	rs201219964	T	C	5289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=6.172;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=0.501;QD=7.76;ReadPosRankSum=-1.565;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:519,163:0.24:682
chr11	1016963	rs76273000	G	T	7638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=7.812;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-5.300;QD=11.37;ReadPosRankSum=-0.391;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:464,208:0.31:672
chr11	1016968	rs34243203	T	G	4300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.651;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-1.661;QD=7.28;ReadPosRankSum=-2.701;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:456,135:0.23:591
chr11	1016972	.	G	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.700;ClippingRankSum=0.000;DP=644;ExcessHet=3.0103;FS=5.724;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-10.064;QD=0.41;ReadPosRankSum=2.593;SOR=1.576;set=HC	GT:AD:AF:DP	0/1:591,50:0.08:641
chr11	1016976	rs78728217	T	G	7662.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.076;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=5.344;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-8.777;QD=12.24;ReadPosRankSum=-1.867;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:420,206:0.33:626
chr11	1016977	.	G	A	1294.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=621;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-11.602;QD=2.10;ReadPosRankSum=3.280;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:550,68:0.11:618
chr11	1016978	.	T	A	3607.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.914;ClippingRankSum=0.000;DP=611;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-3.120;QD=6.91;ReadPosRankSum=-5.321;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:412,110:0.21:522
chr11	1016984	rs78839362	G	A	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.317;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-12.990;QD=1.72;ReadPosRankSum=2.065;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:538,65:0.11:603
chr11	1016987	.	G	A	214.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DP=592;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-13.345;QD=0.38;ReadPosRankSum=0.522;SOR=1.788;set=HC	GT:AD:AF:DP	0/1:526,43:0.08:569
chr11	1016988	rs72311383	ATGT	A	2341.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.073;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=5.143;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=0.100;QD=3.92;ReadPosRankSum=-7.822;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:514,84:0.14:598
chr11	1017029	rs35621365	T	G	10544.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:170,357:0.68:527
chr11	1017069	rs80333708	G	A	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=1.089;QD=3.89;ReadPosRankSum=5.039;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:448,166:0.27:614
chr11	1017084	rs34649796	G	A	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=3.712;QD=2.95;ReadPosRankSum=-1.098;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:489,147:0.23:636
chr11	1017110	rs36130410	C	T	5037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=0.695;QD=7.75;ReadPosRankSum=-0.407;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:493,157:0.24:650
chr11	1017112	rs77753732	G	C	5452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-0.123;QD=10.59;ReadPosRankSum=1.030;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:356,159:0.31:515
chr11	1017113	rs74202058	T	C	13384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.398;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-8.208;QD=20.69;ReadPosRankSum=3.711;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:303,344:0.53:647
chr11	1017135	.	G	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DP=811;ExcessHet=3.0103;FS=4.503;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-4.718;QD=1.37;ReadPosRankSum=1.230;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:634,137:0.18:771
chr11	1017154	rs112965257	T	G	4912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-12.113;QD=6.67;ReadPosRankSum=1.995;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:577,159:0.22:736
chr11	1017158	rs36143620	G	T	4706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-12.456;QD=6.56;ReadPosRankSum=2.234;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:571,147:0.20:718
chr11	1017161	rs374837441	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-2.860;QD=1.02;ReadPosRankSum=-1.534;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:619,66:0.10:685
chr11	1017169	rs200932890	G	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-3.391;QD=0.88;ReadPosRankSum=-2.511;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:602,60:0.09:662
chr11	1017173	rs61869004	G	A	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:373,264:0.41:637
chr11	1017183	rs34844844	G	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=4.524;QD=2.49;ReadPosRankSum=-0.063;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:464,127:0.21:591
chr11	1017186	rs74579726	A	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=7.413;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-8.475;QD=1.71;ReadPosRankSum=-3.885;SOR=1.517;set=HC	GT:AD:AF:DP	0/1:480,67:0.12:547
chr11	1017220	rs56238842	T	C	10732.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:84,279:0.77:363
chr11	1017231	rs35840539	A	G	10572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-8.437;QD=32.73;ReadPosRankSum=-0.860;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,242:0.75:323
chr11	1017239	rs56386804	C	T	9763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-8.233;QD=31.60;ReadPosRankSum=-1.242;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:76,233:0.75:309
chr11	1017240	rs62891761	G	A	5699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=5.752;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-3.616;QD=18.51;ReadPosRankSum=1.557;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:97,211:0.69:308
chr11	1017277	rs111373859	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=9.804;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-5.483;QD=0.65;ReadPosRankSum=-1.198;SOR=1.323;set=HC	GT:AD:AF:DP	0/1:346,33:0.09:379
chr11	1017280	rs199539548	G	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-3.156;QD=0.52;ReadPosRankSum=-0.095;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:350,31:0.08:381
chr11	1017294	rs200241162	A	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-3.424;QD=0.79;ReadPosRankSum=-1.299;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:406,47:0.10:453
chr11	1017302	rs35330958	G	C	5923.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:349,159:0.31:508
chr11	1017307	rs372717767	G	A	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-5.788;QD=1.95;ReadPosRankSum=-2.615;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:453,92:0.17:545
chr11	1017317	rs33943903	G	T	6670.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:424,186:0.30:610
chr11	1017325	rs55903826	A	C	3513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=9.107;QD=5.25;ReadPosRankSum=2.358;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:451,218:0.33:669
chr11	1017337	rs76686156	TC	CA	8516.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;JOINED;set=Intersection	GT:AD:AF:DP	0/1:519,238:0.31:757
chr11	1017381	rs34912894	G	C	6431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-22.955;QD=7.75;ReadPosRankSum=1.772;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:593,237:0.29:830
chr11	1017384	rs34095361	G	C	10026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-20.700;QD=12.20;ReadPosRankSum=2.993;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:512,310:0.38:822
chr11	1017392	.	A	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=746;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-8.133;QD=0.59;ReadPosRankSum=0.314;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:676,67:0.09:743
chr11	1017421	rs35549382	G	T	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:493,197:0.29:690
chr11	1017440	rs78729877	C	T	7307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-7.149;QD=10.89;ReadPosRankSum=-3.000;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:472,199:0.30:671
chr11	1017443	rs80266715	C	G	7208.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:372,201:0.35:573
chr11	1017458	.	A	G	991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;ClippingRankSum=0.000;DP=670;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-0.130;QD=1.56;ReadPosRankSum=-1.773;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:565,69:0.11:634
chr11	1017461	rs77216712	G	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.035;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-0.660;QD=1.20;ReadPosRankSum=-1.115;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:590,65:0.10:655
chr11	1017464	rs112874139	T	C	5927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=4.459;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-7.058;QD=10.31;ReadPosRankSum=1.048;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:395,180:0.31:575
chr11	1017466	rs201054567	T	C	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-10.827;QD=2.21;ReadPosRankSum=-0.023;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:515,67:0.12:582
chr11	1017470	rs75533660	G	T	3716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-8.955;QD=5.94;ReadPosRankSum=2.116;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:527,99:0.16:626
chr11	1017471	.	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-9.904;QD=0.88;ReadPosRankSum=2.998;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:571,52:0.08:623
chr11	1017483	rs79986665	T	G	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-10.094;QD=3.11;ReadPosRankSum=1.886;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:554,88:0.14:642
chr11	1017495	rs67507057	ATGC	A	258.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-9.536;QD=0.41;ReadPosRankSum=2.429;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:583,47:0.07:630
chr11	1017498	rs76707565	C	G	4060.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.735;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.451;QD=6.87;ReadPosRankSum=1.927;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:451,140:0.24:591
chr11	1017514	rs79037833	A	G	5911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.704;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-16.185;QD=9.32;ReadPosRankSum=4.234;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:456,178:0.28:634
chr11	1017522	rs199592093	T	G	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-8.774;QD=4.43;ReadPosRankSum=4.087;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:540,114:0.17:654
chr11	1017566	.	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DP=614;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-12.310;QD=1.64;ReadPosRankSum=-1.141;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:534,68:0.11:602
chr11	1017575	rs76222533	C	T	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-16.039;QD=1.79;ReadPosRankSum=-2.697;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:527,67:0.11:594
chr11	1017581	rs76886285	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-17.885;QD=1.32;ReadPosRankSum=-3.119;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:538,59:0.10:597
chr11	1017746	rs78848170	T	G	11359.77	.	AC=1;AF=0.500;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	0/1:707,325:0.31:1032
chr11	1017767	rs75637734	G	C	10192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=1025;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-1.663;QD=10.10;ReadPosRankSum=2.286;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:715,294:0.29:1009
chr11	1017773	rs57384288	G	A	6462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-7.658;QD=6.66;ReadPosRankSum=-3.269;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:751,220:0.23:971
chr11	1017783	rs36101709	A	G	18441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-8.108;QD=19.74;ReadPosRankSum=0.371;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:468,466:0.50:934
chr11	1017833	rs373775476	C	T	3435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.111;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-3.092;QD=4.28;ReadPosRankSum=-1.971;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:659,143:0.18:802
chr11	1017844	rs200752571	T	C	2830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.947;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-4.275;QD=3.76;ReadPosRankSum=-3.451;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:642,111:0.15:753
chr11	1017845	rs74610224	C	G	5827.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:535,192:0.26:727
chr11	1017858	rs79583615	A	G	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:502,157:0.24:659
chr11	1017883	.	C	T	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=0.940;QD=3.64;ReadPosRankSum=0.822;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:327,106:0.24:433
chr11	1017900	rs77920671	G	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-0.163;QD=1.02;ReadPosRankSum=1.293;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:335,34:0.09:369
chr11	1017921	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=0.051;QD=0.97;ReadPosRankSum=-1.881;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:265,27:0.09:292
chr11	1017935	rs138784536	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:228,25:0.10:253
chr11	1017941	rs61869007	G	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=7.562;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=1.694;QD=1.50;ReadPosRankSum=-3.683;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:221,22:0.09:243
chr11	1017945	.	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=0.807;QD=0.16;ReadPosRankSum=-3.689;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:221,18:0.08:239
chr11	1017963	rs61869008	G	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.594;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=3.713;QD=6.63;ReadPosRankSum=-2.377;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:145,41:0.22:186
chr11	1017968	rs61869009	T	A	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=8.841;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=3.723;QD=8.40;ReadPosRankSum=-2.105;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:137,48:0.26:185
chr11	1017981	rs61869010	T	A	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=11.469;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=4.803;QD=10.62;ReadPosRankSum=0.650;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:115,55:0.32:170
chr11	1017988	rs112579249	G	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-2.189;QD=1.25;ReadPosRankSum=-2.049;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:147,26:0.15:173
chr11	1018012	rs10751676	T	G	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.271;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=12.400;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-6.669;QD=5.01;ReadPosRankSum=-4.726;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:157,43:0.21:200
chr11	1018024	.	C	G	2843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-0.868;QD=14.01;ReadPosRankSum=0.036;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:131,72:0.35:203
chr11	1018025	rs10751677	C	A	4306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=7.889;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-7.220;QD=21.32;ReadPosRankSum=-3.174;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:99,103:0.51:202
chr11	1018031	rs10751678	G	A	4221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=11.413;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-6.187;QD=20.49;ReadPosRankSum=-2.555;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:101,105:0.51:206
chr11	1018042	rs200364398	A	G	3218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-1.959;QD=15.86;ReadPosRankSum=1.062;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:117,86:0.42:203
chr11	1018048	rs12787400	A	G	3290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-3.304;QD=16.21;ReadPosRankSum=1.801;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:116,87:0.43:203
chr11	1018059	rs78336072	C	T	3271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-3.693;QD=15.29;ReadPosRankSum=3.038;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:124,90:0.42:214
chr11	1018116	rs10902269	T	G	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:163,118:0.42:281
chr11	1018138	rs71454075	T	C	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.792;QD=14.83;ReadPosRankSum=0.018;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:163,105:0.39:268
chr11	1018144	rs12807084	G	C	3749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.847;QD=14.59;ReadPosRankSum=-0.944;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:158,99:0.39:257
chr11	1018169	rs77647814	C	G	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.566;QD=11.25;ReadPosRankSum=-2.186;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:166,74:0.31:240
chr11	1018175	rs12418172	A	G	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.059;QD=9.75;ReadPosRankSum=-1.220;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:162,59:0.27:221
chr11	1018182	.	G	T	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=4.989;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-4.618;QD=6.89;ReadPosRankSum=0.846;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:168,45:0.21:213
chr11	1018186	.	G	T	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=6.646;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-4.851;QD=6.31;ReadPosRankSum=0.965;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:162,40:0.20:202
chr11	1018192	.	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=7.875;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-4.851;QD=5.72;ReadPosRankSum=-0.493;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:162,40:0.20:202
chr11	1018196	.	A	T	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=6.851;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.001;QD=5.53;ReadPosRankSum=-0.801;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:162,38:0.19:200
chr11	1018215	.	G	GCA	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=5.022;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-5.460;QD=4.07;ReadPosRankSum=-2.849;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:155,29:0.16:184
chr11	1018218	.	T	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=35.732;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-4.717;QD=1.52;ReadPosRankSum=-0.244;SOR=4.330;set=HC	GT:AD:AF:DP	0/1:153,18:0.11:171
chr11	1018220	.	T	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.463;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=33.188;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-4.904;QD=1.52;ReadPosRankSum=0.036;SOR=4.243;set=HC	GT:AD:AF:DP	0/1:154,17:0.10:171
chr11	1018222	.	AAT	A	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.655;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=33.042;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-4.845;QD=1.16;ReadPosRankSum=-0.645;SOR=4.217;set=HC	GT:AD:AF:DP	0/1:151,17:0.10:168
chr11	1018226	.	T	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.531;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=27.034;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-5.569;QD=1.69;ReadPosRankSum=-1.079;SOR=3.473;set=HC	GT:AD:AF:DP	0/1:143,18:0.11:161
chr11	1018229	rs77630889	C	G	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=17.749;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-7.894;QD=3.67;ReadPosRankSum=-0.612;SOR=2.212;set=HC	GT:AD:AF:DP	0/1:133,25:0.16:158
chr11	1018232	rs113063572	G	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=12.721;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-8.772;QD=3.73;ReadPosRankSum=-0.261;SOR=2.067;set=HC	GT:AD:AF:DP	0/1:131,20:0.13:151
chr11	1018237	rs79892432	GT	AG	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.431;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=6.395;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-8.859;QD=3.93;ReadPosRankSum=-0.984;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:121,20:0.14:141
chr11	1018245	rs76423553	TT	GC	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.825;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-9.975;QD=5.54;ReadPosRankSum=-2.225;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:123,25:0.17:148
chr11	1018262	rs78003962	GT	CG	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.996;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-7.856;QD=3.06;ReadPosRankSum=-1.684;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:132,23:0.15:155
chr11	1018295	rs73403297	T	C	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-7.849;QD=3.72;ReadPosRankSum=1.956;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:141,29:0.17:170
chr11	1018308	rs61745490	G	A	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=10.643;QD=15.74;ReadPosRankSum=0.857;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:45,120:0.73:165
chr11	1018313	rs75499910	G	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-8.385;QD=2.42;ReadPosRankSum=-2.567;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:146,21:0.13:167
chr11	1018329	rs75968137	T	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-8.391;QD=1.61;ReadPosRankSum=0.842;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:135,16:0.11:151
chr11	1018340	rs77556339	T	C	623.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-10.458;QD=4.02;ReadPosRankSum=1.091;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:132,23:0.15:155
chr11	1018341	rs79748612	G	A	533.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-9.732;QD=3.44;ReadPosRankSum=0.913;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:134,21:0.14:155
chr11	1018385	rs7396380	T	A	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-10.134;QD=6.89;ReadPosRankSum=2.447;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:82,24:0.23:106
chr11	1018390	rs111785507	C	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-9.137;QD=6.85;ReadPosRankSum=2.878;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:77,23:0.23:100
chr11	1018399	.	C	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-7.964;QD=5.85;ReadPosRankSum=3.114;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr11	1018406	.	A	T	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.351;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-7.434;QD=6.10;ReadPosRankSum=1.065;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr11	1018440	.	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-6.529;QD=1.92;ReadPosRankSum=-3.738;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr11	1018442	.	G	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-5.286;QD=2.10;ReadPosRankSum=-1.872;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:65,6:0.08:71
chr11	1018456	rs79920422	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.297;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-3.797;QD=1.11;ReadPosRankSum=5.084;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr11	1018483	rs78265558	C	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.442;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-5.886;QD=3.56;ReadPosRankSum=3.694;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr11	1018496	rs67341709	G	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.280;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-6.378;QD=2.74;ReadPosRankSum=1.473;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:84,13:0.13:97
chr11	1019375	rs9704308	C	T	6149.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	1019853	rs111376699	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1075747	rs2856111	T	C	14586.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:2,569:1.00:571
chr11	1077493	rs34367348	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr11	1078393	rs7104590	T	C	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	1078752	rs41500945	C	T	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	1078783	.	C	CTGAG	102	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	1078784	.	C	G	111.03	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.52;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	1079570	rs112345363	G	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	1079695	rs114865045	C	T	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr11	1084278	rs61732128	G	A	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr11	1090493	rs113925635	TC	T	473.74	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	1093430	rs199573018	C	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=3014;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=8.024;QD=0.58;ReadPosRankSum=3.940;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:1957,338:0.15:2295
chr11	1093512	rs34493663	C	A	12175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=1858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=2.886;QD=6.72;ReadPosRankSum=6.682;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1213,599:0.33:1812
chr11	1093685	rs41469747	C	G	47864.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=1158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.044;QD=41.80;ReadPosRankSum=1.072;SOR=0.131;set=HC	GT:AD:AF:DP	1/1:2,1143:1.00:1145
chr11	1093710	rs7944723	C	G	48835.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=1193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=41.67;ReadPosRankSum=-0.976;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,1171:1.00:1172
chr11	1093945	rs7934606	T	C	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	1094629	rs11245950	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1094690	rs10794291	C	T	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	1094753	rs10794292	A	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	1095082	rs6597999	A	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	1096494	rs6421972	T	C	11288.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	1098637	rs12418069	A	G	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	1099308	rs7952343	C	T	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr11	1100905	rs7396585	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr11	1101078	rs11245954	A	G	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	1101536	rs7122456	C	T	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	1101649	rs7480563	T	C	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	1103100	rs7106709	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1103296	rs7126405	T	C	13576.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr11	1103650	rs7106039	C	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	1103786	rs9988872	A	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	1103873	rs11245957	C	T	6612.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr11	1103991	rs41437546	G	C	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr11	1104123	rs12270802	C	T	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	1104296	rs7928098	G	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	1104503	rs7924911	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.58;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1104508	rs7927882	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.99;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1151695	rs28737416	C	T	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr11	1154073	rs33962059	A	AC	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1155115	rs28485871	G	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr11	1155289	rs28468624	A	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	1156678	rs55794879	G	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	1157476	rs28707071	C	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr11	1158073	rs28691231	T	C	10722.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	1159150	rs28542750	A	T	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	1161201	rs28653550	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	1161315	rs28403537	T	C	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	1161335	rs28663568	T	G	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	1161713	rs28404876	G	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1162402	rs28398205	C	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	1213245	rs67624660	T	A	69293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.936;ClippingRankSum=0.000;DB;DP=2772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.719;QD=25.85;ReadPosRankSum=-1.422;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:884,1797:0.67:2681
chr11	1213256	rs370028072	C	T	8234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.255;ClippingRankSum=0.000;DB;DP=2609;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.121;QD=3.26;ReadPosRankSum=3.443;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:1938,588:0.23:2526
chr11	1213257	rs76779582	T	C	70208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=2577;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.875;QD=28.14;ReadPosRankSum=0.265;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:833,1662:0.67:2495
chr11	1213259	rs75991767	T	G	69401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=2553;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.872;QD=28.09;ReadPosRankSum=0.034;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:823,1648:0.67:2471
chr11	1213264	rs72846341	G	A	69323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=2521;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.709;QD=28.38;ReadPosRankSum=-0.698;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:799,1644:0.67:2443
chr11	1213272	rs78252457	A	C	63995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=2516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.979;QD=26.10;ReadPosRankSum=1.696;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:879,1573:0.64:2452
chr11	1213275	rs71251383	G	A	4886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=2505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.378;QD=2.00;ReadPosRankSum=1.919;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:1975,467:0.19:2442
chr11	1213281	rs75618268	C	T	63943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=2453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.423;QD=26.73;ReadPosRankSum=0.550;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:843,1549:0.65:2392
chr11	1213287	rs112774721	G	A	16987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=2400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.293;QD=7.26;ReadPosRankSum=-0.299;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:1783,558:0.24:2341
chr11	1213293	rs77207494	C	T	35798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=2417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.588;QD=15.18;ReadPosRankSum=2.969;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1429,930:0.39:2359
chr11	1213296	rs78466479	A	G	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;ClippingRankSum=0.000;DB;DP=2425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.412;QD=0.37;ReadPosRankSum=-3.400;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:2188,181:0.08:2369
chr11	1213302	rs371630624	T	C	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=2423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.275;QD=0.68;ReadPosRankSum=-1.290;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:2183,191:0.08:2374
chr11	1213311	rs80058880	C	T	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=2461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.981;QD=1.01;ReadPosRankSum=0.352;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:2197,218:0.09:2415
chr11	1213314	rs73395695	C	T	43662.77	.	AC=1;AF=0.500;AN=2;DB;DP=2459;set=Intersection	GT:AD:AF:DP	0/1:1232,1182:0.49:2414
chr11	1213317	rs76191775	G	A	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=2477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.783;QD=1.19;ReadPosRankSum=0.851;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:2194,238:0.10:2432
chr11	1213405	rs67262263	G	A	12283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=1912;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.872;QD=6.58;ReadPosRankSum=-0.036;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:1188,678:0.36:1866
chr11	1213416	rs78511643	G	A	11737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=1774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.842;QD=6.79;ReadPosRankSum=1.363;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:1088,641:0.37:1729
chr11	1213424	rs61867531	A	G	42854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756;ClippingRankSum=0.000;DB;DP=1653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.832;QD=26.52;ReadPosRankSum=2.917;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:416,1200:0.74:1616
chr11	1213428	rs61867532	T	C	48317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.779;ClippingRankSum=0.000;DB;DP=1592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.846;QD=31.03;ReadPosRankSum=3.921;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:411,1146:0.74:1557
chr11	1213440	rs61867533	T	C	44011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100;ClippingRankSum=0.000;DB;DP=1467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.862;QD=30.63;ReadPosRankSum=3.085;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:390,1047:0.73:1437
chr11	1213461	rs61867534	T	G	8672.77	.	AC=1;AF=0.500;AN=2;DB;DP=1302;set=Intersection	GT:AD:AF:DP	0/1:625,448:0.42:1073
chr11	1213533	rs73395699	C	T	6553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=13.904;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-7.509;SOR=1.422;set=HC	GT:AD:AF:DP	0/1:586,367:0.39:953
chr11	1213794	rs28385332	G	C	9146.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.60;ReadPosRankSum=0.443;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:2,229:0.99:231
chr11	1213806	rs28653192	T	C	7916.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.98;ReadPosRankSum=1.528;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,178:0.99:180
chr11	1214751	rs56255885	C	G	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	1215271	rs71025716	GA	G	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	1215580	rs1132433	A	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	1215698	rs28452143	A	G	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	1216316	rs58550179	G	GC	14601.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	1216333	rs60138698	TA	T	14775.73	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	1217084	rs28652890	T	C	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	1217228	rs28592983	T	C	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr11	1218128	rs28503875	G	A	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr11	1218607	rs56057650	T	C	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	1218613	rs28668687	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	1218690	rs56312433	G	C	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	1219094	rs35700114	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr11	1219118	rs28742281	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr11	1219151	rs35915689	C	G	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr11	1220105	rs55920842	C	T	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	1220171	rs34831688	C	T	10724.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=0.679;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:2,420:1.00:422
chr11	1220519	rs35525357	GA	G	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	1220599	rs28633254	T	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	1220760	rs28514396	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr11	1220796	rs28502687	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr11	1221305	rs2075844	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1221592	rs28728088	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	1221985	rs3087562	C	T	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	1247075	.	A	G	889.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	1248197	rs908224	G	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	1248491	rs908223	T	G	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	1248731	rs2075854	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	1250068	rs144854459	T	TG	782.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	1250384	rs2471912	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	1250488	rs2075859	C	T	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	1250583	rs55684014	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	1250603	rs2075860	G	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	1250696	rs10832955	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	1252047	rs2672807	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.67;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	1252708	rs2735709	G	C	13344.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-0.790;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:2,536:1.00:538
chr11	1253401	rs12421917	C	G	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	1253856	rs1318321	T	C	8393.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	1253942	rs908229	T	C	9072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-0.243;SOR=0.350;set=HC	GT:AD:AF:DP	1/1:1,349:1.00:350
chr11	1253969	rs72846370	A	G	2719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-3.226;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:185,81:0.30:266
chr11	1253976	rs76956995	A	G	2618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-4.408;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:174,75:0.30:249
chr11	1253980	rs202127660	A	G	2486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-5.164;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:165,70:0.30:235
chr11	1254599	rs2672806	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	1254940	rs2735719	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	1255089	rs147340559	CCCCTG	C	4059.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	1257867	rs2672803	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1258175	rs80092233	C	T	4530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=23.070;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.710;QD=7.18;ReadPosRankSum=-5.699;SOR=2.106;set=HC	GT:AD:AF:DP	0/1:496,135:0.21:631
chr11	1258192	rs76589014	A	T	5295.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.560;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=12.075;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.570;QD=7.50;ReadPosRankSum=-0.662;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:542,164:0.23:706
chr11	1258193	rs74904842	T	C	5337.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.154;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=12.045;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.555;QD=7.54;ReadPosRankSum=-0.470;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:542,166:0.23:708
chr11	1258197	rs78674028	A	G	5697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;ClippingRankSum=0.000;DB;DP=709;ExcessHet=3.0103;FS=10.037;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.494;QD=8.10;ReadPosRankSum=-0.031;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:532,171:0.24:703
chr11	1258199	rs80200632	C	T	6498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=10.062;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.456;QD=9.24;ReadPosRankSum=0.115;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:528,175:0.25:703
chr11	1258217	rs74648489	T	G	7473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=9.236;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.122;QD=10.78;ReadPosRankSum=0.625;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:480,213:0.31:693
chr11	1258226	rs55700357	C	T	7590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=9.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=2.995;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:462,212:0.31:674
chr11	1258240	rs77287508	CA	TG	7785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=4.348;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=4.193;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:411,215:0.34:626
chr11	1258283	rs78669250	G	A	7209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.68;ReadPosRankSum=2.113;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:296,195:0.40:491
chr11	1258286	rs77996005	C	T	7341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.95;ReadPosRankSum=1.985;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:297,194:0.40:491
chr11	1258295	rs79118814	A	G	7189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.98;ReadPosRankSum=0.516;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:287,193:0.40:480
chr11	1258365	rs376966273	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=45.203;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-4.988;SOR=2.251;set=HC	GT:AD:AF:DP	0/1:143,50:0.26:193
chr11	1260145	rs75799984	T	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=17.475;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-4.882;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:282,55:0.16:337
chr11	1260157	rs78678736	G	C	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=26.632;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.411;SOR=1.783;set=HC	GT:AD:AF:DP	0/1:291,63:0.18:354
chr11	1260160	rs78177850	T	G	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.003;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=24.708;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.776;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:292,63:0.18:355
chr11	1260163	rs79220674	C	T	1736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=24.708;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.177;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:292,63:0.18:355
chr11	1260175	rs75760167	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.587;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=15.198;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.399;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:286,58:0.17:344
chr11	1260193	rs74763753	T	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=8.875;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-2.260;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:249,53:0.18:302
chr11	1260214	rs79585387	C	T	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.674;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=10.881;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-2.009;SOR=1.538;set=HC	GT:AD:AF:DP	0/1:227,39:0.15:266
chr11	1260217	rs79638064	C	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.616;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=9.475;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-2.108;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:222,37:0.14:259
chr11	1260219	rs75935363	C	T	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.021;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=8.209;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-2.410;SOR=1.357;set=HC	GT:AD:AF:DP	0/1:217,36:0.14:253
chr11	1260220	.	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.311;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=8.220;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-2.775;SOR=1.357;set=HC	GT:AD:AF:DP	0/1:213,36:0.14:249
chr11	1261640	rs2735733	C	T	8130.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	1262796	rs146030838	G	A	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	1262907	rs2037089	T	C	12116.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:4,468:0.99:472
chr11	1263776	rs2943510	C	T	8997.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr11	1267325	rs55813014	T	C	17862.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.14;QD=26.70;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr11	1271077	rs201326462	G	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.12;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	1271143	rs200405882	G	A	172.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.43;MQRankSum=-1.534;QD=21.62;ReadPosRankSum=1.534;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr11	1271246	rs373415789	C	T	934.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.973;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=13.237;MLEAC=2;MLEAF=1.000;MQ=42.04;MQRankSum=-3.643;QD=24.60;ReadPosRankSum=-0.440;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr11	1272226	rs2943512	A	C	15325.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr11	1275652	rs9919637	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	1277930	rs182663240	C	T	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr11	1279486	rs2249550	A	G	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	1281134	rs2857476	T	C	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	1284226	rs55766124	C	T	1112.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.19;ReadPosRankSum=-0.803;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr11	1284226	.	CA	TG	1126	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=1;MGOF=64;MMLQ=27;MQ=59.07;NF=16;NR=13;PP=1126;QD=40.6713060297;SC=CTAGGCATAGCAGGATGCAGG;SbPval=0.64;Source=Platypus;TC=30;TCF=16;TCR=14;TR=29;WE=1284235;WS=1284216;set=Platypus	GT:AD:AF:DP	1/1:1,29:0.97:30
chr11	1284227	rs12417955	A	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	1304674	rs5743992	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1304706	rs3838783	TG	T	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	1309783	rs5743970	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	1459699	rs2272426	G	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.65;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	1464382	rs114665606	C	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.60;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	1464387	.	C	T	2548.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.51;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	1464903	rs56896587	CG	C	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	1471154	rs11028332	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	1472475	rs3838784	TG	T	2884.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	1481610	rs28555282	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.36;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	1481690	rs150300634	CCTT	C	1794.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=0.000;QD=36.63;ReadPosRankSum=-0.847;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr11	1481930	rs4963048	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	1481962	rs34875491	GC	G	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	1491096	rs9440	G	A	10569.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr11	1492445	rs4881724	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	1501670	rs10742185	G	C	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	1502097	rs10767696	A	G	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	1502401	rs4881735	A	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	1507512	rs1881502	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	1507731	rs1881503	A	G	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	1509238	rs2334554	T	C	12409.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr11	1509421	rs2334553	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	1576005	rs59483236	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	1576137	rs11604635	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	1576235	rs6578504	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	1576283	rs11603496	G	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	1576863	rs12576976	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1578090	rs7129499	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	1585277	rs3740620	C	T	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	1606120	.	ACCACAGCCACCCTTGGATCCCCCACAAGAG	A	5239.73	.	AC=2;AF=1.00;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	1619172	.	ACCCCCACAGGAGCCACAGCCCCCCTTGGAG	A	2844.73	.	AC=2;AF=1.00;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr11	1628844	rs1989592	A	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	1629149	rs79595201	G	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-19.409;QD=1.25;ReadPosRankSum=4.763;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:392,42:0.10:434
chr11	1629156	rs75371407	T	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-18.662;QD=1.30;ReadPosRankSum=4.456;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:382,42:0.10:424
chr11	1629163	rs76071829	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.275;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-14.987;QD=1.65;ReadPosRankSum=-4.507;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:356,80:0.18:436
chr11	1630342	rs10837527	T	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	1756681	rs7943617	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	1770192	.	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr11	1770224	rs111693235	C	G	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr11	1771797	rs3740621	T	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr11	1774666	rs12214	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	1774934	rs112379600	A	G	11106.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.965;SOR=0.298;set=HC	GT:AD:AF:DP	1/1:1,428:1.00:429
chr11	1775350	rs112021026	C	T	8245.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.93;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	1776024	rs55725229	TC	T	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1780205	rs11555039	A	G	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	1780328	rs372689713	C	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	1780951	.	G	GAGCCA	285	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=2;HapScore=2;MGOF=43;MMLQ=28;MQ=60.85;NF=1;NR=13;PP=285;QD=22.8571428571;SC=GCTGTCCCCAGAGCCAAGGCC;SbPval=0.51;Source=Platypus;TC=20;TCF=1;TCR=19;TR=14;WE=1780959;WS=1780941;set=Platypus	GT:AD:AF:DP	1/1:6,14:0.70:20
chr11	1782692	rs140563067	C	T	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	1782761	rs72850961	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	1785281	.	G	C	303.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=33.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	1785401	rs144932926	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	1785677	rs183814758	C	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	1853107	rs616594	C	T	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	1853121	rs867839	C	T	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	1855839	.	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	1856216	rs7108419	T	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1856808	rs140658419	G	A	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	1857173	rs564271	T	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr11	1857270	rs907609	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	1857565	.	GGCTGGGTGGGCCTGGGCA	G	4391.73	.	AC=2;AF=1.00;AN=2;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr11	1857930	rs3741229	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr11	1858124	rs373120265	G	A	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr11	1858194	rs149017446	C	T	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:5,297:0.98:302
chr11	1858352	rs148305306	A	G	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	1861760	rs907610	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	1874221	rs907612	C	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	1880608	rs80118038	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	1880811	rs571122	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	1890990	rs592373	G	A	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=25.46;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	1891035	rs61278563	G	GA	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	1891599	rs7929436	A	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	1901467	rs2271439	A	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1902635	rs536462	G	T	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	1910707	rs613638	T	C	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr11	1911115	rs11041692	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	1944050	rs370860604	CCT	C	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.569;QD=1.52;ReadPosRankSum=0.934;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:310,48:0.13:358
chr11	1944202	rs965912	A	G	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	1944636	rs2734500	A	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	1948186	rs7125631	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	1950922	.	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	1961703	.	TCACACA	TCA,T	578.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=17;set=Intersection	GT:AF:DP	1/1:1.00:15
chr11	1968455	rs907601	C	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	1968478	.	CG	C	714.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1971997	rs115027699	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1973205	rs217205	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	1976988	rs177720	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	1983444	rs217240	G	A	7269.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=25.87;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	2017439	rs3024270	C	G	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	2167618	rs1003484	A	G	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	2169110	rs3741211	A	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	2182004	rs5506	A	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	2185717	rs3842723	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	2186845	rs11825601	C	T	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	2187071	rs6578990	T	C	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr11	2187398	rs4072823	T	G	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	2187439	rs4072824	C	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	2188566	rs7925924	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	2189185	rs4074905	G	A	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	2189500	rs147611260	C	CG	2494.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr11	2194175	rs10743149	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	2194420	rs10770142	G	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	2321650	rs2651823	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	2323029	rs756924	T	C	17908.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr11	2323220	rs734094	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	2323528	rs2074021	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	2324041	rs2074022	A	G	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr11	2324852	rs2651824	A	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	2325581	rs2074023	C	T	218.79	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr11	2329880	rs12796957	G	C	178.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=35.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	2329894	rs34400624	GC	G	318.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=31.87;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	2329995	rs11554947	C	T	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	2330077	rs2234297	C	G	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	2330400	rs2521273	G	A	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	2330479	rs2521274	G	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	2330563	rs2521275	C	T	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	2337012	rs11022252	G	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	2337693	rs2234308	G	A	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr11	2356603	rs2651795	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	2356701	rs113441481	C	T	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	2356769	rs2651794	T	C	8574.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=27.22;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	2357108	rs2173888	C	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	2400338	rs2651796	C	G	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	2405766	rs145228369	GGGTGGGGCATCTCGGGA	G	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	2406893	.	G	T	85	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=3;HapScore=2;MGOF=48;MMLQ=24;MQ=56.18;NF=3;NR=0;PP=85;QD=39.9237375157;SC=TGGTGTGCCCGTCGTCTGTGC;SbPval=1.0;Source=Platypus;TC=15;TCF=15;TCR=0;TR=3;WE=2406901;WS=2406883;set=Platypus	GT:AD:AF:DP	1/1:12,3:0.20:15
chr11	2407084	rs71029143	G	GT	11209.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	2424541	rs2234279	C	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	2424684	rs2234283	A	C	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	2426259	rs79526258	C	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	2427211	rs7938864	G	A	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr11	2427291	rs800342	A	C	13147.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	2432517	rs74050548	C	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	2432820	rs2651822	A	G	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	2433568	rs148615642	A	AGGATCAGGGTTCAGCGTGCCATGG	922.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	2436567	rs7102871	G	A	9780.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	2439106	rs113943181	G	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	2439215	rs77792884	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	2439542	rs3986599	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	2439621	rs2074236	A	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	2439651	rs886276	G	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2439672	rs147746598	T	TC	2143.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	2439767	rs886277	T	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	2439876	rs886278	G	A	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	2440041	rs4244810	T	C	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	2441589	rs61741881	C	T	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	2441646	rs11607968	G	T	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr11	2441741	rs113538698	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	2442512	rs112492621	T	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	2443468	rs79388781	C	A	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	2443631	rs142626799	A	AG	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	2444094	rs2301699	C	G	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	2542605	rs10400376	TA	GG	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	2549329	rs145292450	TGG	T	1958.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	2683361	rs199948521	C	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	2789856	rs163161	A	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	2797320	rs163150	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	2798448	rs163148	A	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	2799367	rs200511255	TC	T	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	2868868	rs79788804	G	A	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	2868878	rs3852520	T	C	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.43;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	2909393	rs72850017	G	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	2920953	rs75027200	CA	C	2368.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr11	2924610	rs1048047	G	A	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	2924850	rs34816459	T	TC	2081.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	2929552	rs429886	A	G	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	2929659	rs424663	G	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	2930594	rs67769451	CG	C	1524.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	2930656	rs2286660	T	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	2939392	rs445679	G	A	8094.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:1,315:1.00:316
chr11	2940492	rs450244	T	C	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	2979798	rs7940694	G	T	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	2985177	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=51.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.090;SOR=6.354;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr11	2990852	rs61871240	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	2990985	rs61871241	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	3026692	rs4758458	T	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	3026712	rs7931504	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	3028270	rs7950766	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	3036933	rs2071104	G	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	3048140	rs494427	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	3061949	rs2285390	C	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	3076018	rs7934892	T	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	3076257	rs7945933	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	3109297	rs935431	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	3109426	rs10160757	T	C	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	3111637	rs113975961	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	3111782	rs2412134	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	3115354	rs9795009	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	3121248	.	C	CAA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.204;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	3121521	rs17263699	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	3124435	rs1542188	G	A	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	3128915	rs3741351	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	3129027	rs3741350	G	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	3129200	rs113370820	GCCCCAC	G	1315.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	3141530	rs34752531	C	G	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=1.680;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	3141537	rs55862536	T	C	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.40;SOR=1.482;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	3143030	rs6578322	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	3150482	rs11025526	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	3187772	rs72848215	A	G	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr11	3249081	rs11026035	G	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	3361087	rs2073805	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	3381843	rs2157763	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	3382069	rs6578335	C	G	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	3382215	rs6578336	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	3383962	rs10734319	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	3390006	rs7943767	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	3390173	rs1989786	A	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	3390547	rs7925972	G	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	3392351	rs2269735	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	3392357	rs2269734	T	G	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.458;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	3392972	rs2269732	G	A	7422.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	3394894	rs10833820	G	A	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	3394960	rs10833821	A	G	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr11	3398760	rs7932709	G	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	3398795	rs7932797	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	3400334	rs7931660	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	3400422	rs6578342	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	3659993	rs2271586	G	T	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	3660103	rs2271587	G	T	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	3660914	rs2271589	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	3661140	rs4910876	T	C	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	3661585	rs3062849	A	ATGG	14229.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.75;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	3663131	rs7933740	G	A	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	3681519	rs2280134	T	C	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr11	3829419	rs2278845	G	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	3838899	rs61899363	A	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr11	3838953	rs10835147	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	3844254	.	CTTTTTTTTTTTTT	C	804.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.761;QD=32.19;ReadPosRankSum=1.306;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr11	3988991	rs58151848	C	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	4045229	rs114583092	C	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	4045360	rs10835508	A	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	4104060	rs2898950	A	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	4104103	rs58461583	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	4104272	rs59178256	A	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	4104340	rs61225070	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	4104355	rs894455	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	4104745	rs2289570	C	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	4116335	rs12801088	A	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	4123345	rs1348310	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	4128739	rs2228121	T	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	4133317	rs56336381	C	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	4153767	rs10835662	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	4159466	rs1042858	G	A	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	4159764	rs1042919	A	T	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	4159770	rs866902	AT	A	62.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	4185463	rs979941	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	4185595	rs979942	T	G	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	4406479	rs4144331	G	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	4470522	rs73432766	G	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	4471083	.	C	G	11168.77	.	AC=2;AF=1.00;AN=2;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr11	4471276	rs331537	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	4471473	rs7934336	C	T	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr11	4592706	rs141600462	T	TAC	5074.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr11	4592923	rs199864317	CAAA	C	241.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	4594739	rs919519	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	4608542	rs1847632	C	T	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr11	4615390	rs2010722	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.75;QD=27.50;SOR=1.637;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	4615508	rs2010719	C	G	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	4621485	rs2231978	C	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	4622159	rs2231972	T	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	4623788	rs931811	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	4703165	rs1123991	C	A	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	4729650	rs7122597	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	4730985	rs4619142	C	T	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr11	4731180	rs4432013	G	A	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	4731468	rs4436535	G	A	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	4731583	rs4471413	C	T	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	4790268	rs1030726	C	A	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	4790308	rs1030725	A	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	4790378	rs147618500	A	T	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	4790410	rs1030724	A	G	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	4790471	rs1030723	G	A	8658.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.29;ReadPosRankSum=1.855;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,198:0.99:200
chr11	4790474	rs11033793	T	C	8723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.51;ReadPosRankSum=1.663;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,194:0.99:196
chr11	4790671	rs11033795	C	T	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	4790758	rs11033796	G	A	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	4790857	rs11033797	A	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	4790873	rs34672924	CG	C	7820.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	4790881	rs111736749	A	G	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:7,169:0.96:176
chr11	4790948	rs11033800	C	A	7199.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.57;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	4790951	rs11033801	A	G	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=43.78;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	4791178	rs10836609	C	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	4791181	rs10836610	T	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	4824637	rs2053117	G	A	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	4824878	rs2053116	A	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	4825010	rs6578533	T	A	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	4825225	rs7941731	A	G	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	4827092	rs1865284	A	T	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	4827283	rs919899	A	T	2828.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:3,109:0.97:112
chr11	4827322	rs934485	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.73;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	4869906	rs7117260	A	C	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	4870269	rs12417164	A	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	4880992	rs7947547	C	G	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr11	4928866	rs7941509	C	T	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	4936613	rs16907312	G	T	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	4965239	rs2570581	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	4965301	rs2605303	G	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	4967532	rs2595988	G	C	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	4967831	rs2595987	T	C	431.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=43.99;MQRankSum=-2.265;QD=22.71;ReadPosRankSum=-1.756;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr11	4976241	rs2570571	C	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.65;QD=29.30;SOR=2.084;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	4976788	rs35318834	C	A	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	4977026	rs10837027	C	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	5012592	rs61880629	C	T	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	5013421	rs5789346	G	GT	820.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr11	5020416	rs2445290	A	G	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	5067984	rs2500016	A	G	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	5068137	rs2500017	G	A	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr11	5068177	rs2500018	A	T	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr11	5068661	rs2500019	A	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	5079946	rs2445332	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	5080068	rs2500052	G	A	2091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.40;MQRankSum=-0.572;QD=41.84;ReadPosRankSum=-0.686;SOR=0.361;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr11	5080077	rs74458775	T	C	2171.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.65;MQRankSum=-0.550;QD=40.98;ReadPosRankSum=-0.604;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr11	5080234	rs2445333	T	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr11	5080771	rs116709433	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	5141876	rs10837373	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	5141902	rs10837374	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	5141980	rs4426129	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	5142134	rs11035760	C	T	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	5142270	rs10837375	T	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	5142549	rs7947334	T	C	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr11	5172786	rs10768611	A	G	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	5199222	rs7924390	A	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5199340	rs113029548	A	AATGCCC	2240.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr11	5199645	rs6578560	T	C	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	5199660	rs6578561	T	C	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	5199675	rs6578562	C	T	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	5199708	rs6578563	T	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	5199817	rs5789371	GC	G	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	5221645	rs11512276	C	G	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr11	5221825	rs11036212	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	5222021	rs74882018	T	TA	181.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.19;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	5247081	rs63751175	T	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	5247141	rs1609812	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5247791	rs10768683	C	G	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	5248243	rs713040	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	5255327	.	C	T	5508.77	.	AC=2;AF=1.00;AN=2;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	5263577	rs10128555	C	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5269582	rs371855998	AG	A	9989.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.131;MLEAC=2;MLEAF=1.000;MQ=57.45;MQRankSum=6.890;QD=41.28;ReadPosRankSum=2.004;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:12,230:0.95:242
chr11	5269584	rs1065686	T	A	10110.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.120;MLEAC=2;MLEAF=1.000;MQ=57.29;MQRankSum=6.829;QD=41.10;ReadPosRankSum=2.278;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:12,234:0.95:246
chr11	5269586	rs371890964	A	AG	10150.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.126;MLEAC=2;MLEAF=1.000;MQ=57.16;MQRankSum=6.774;QD=40.60;ReadPosRankSum=2.527;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:12,238:0.95:250
chr11	5269799	rs28440105	A	C	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.60;QD=28.20;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	5274452	rs34879481	G	GT	4212.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	5289896	rs3061750	A	AAAAC	2994.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr11	5322520	rs12283334	G	A	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	5323071	rs7118113	C	T	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	5344552	rs7934105	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	5344561	rs7933257	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	5344772	rs10742622	T	C	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	5344847	rs10768793	A	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	5344902	rs7937237	C	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	5345128	rs10837814	G	A	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	5345170	rs7952293	A	G	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	5345486	rs4910750	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	5364276	rs4910551	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	5364450	rs11036912	A	G	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	5364471	rs61738484	C	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	5443442	rs2736590	G	C	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr11	5443700	rs2736588	C	T	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	5443739	rs2736587	T	C	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	5443867	rs10838092	C	T	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	5443887	rs10838093	T	C	12316.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	5443893	rs10838094	G	A	12499.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	5443963	rs10838095	G	A	11063.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	5443969	rs58283839	A	C	10902.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	5444061	rs2736586	G	A	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	5444136	rs2647574	C	T	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	5444353	rs2647573	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	5451982	rs74675654	C	G	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	5451989	rs74818886	C	T	8787.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	5452418	rs1566278	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	5474838	rs2030094	G	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr11	5475506	rs11037502	G	A	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:5,221:0.98:226
chr11	5475746	rs116554032	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	5529865	rs186434	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	5536537	rs393044	A	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	5536848	rs2017433	G	A	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	5566030	rs1995158	A	G	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	5566365	rs1566275	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	5572816	rs401426	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5572836	rs11360659	CT	C	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	5572966	rs423501	A	G	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.91;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	5573024	rs60009475	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	5573044	rs9666981	A	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=42.90;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	5573054	rs9666982	A	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=44.88;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	5573073	rs1694674	A	G	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	5573160	rs401835	G	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	5602438	rs2341432	T	A	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	5602615	rs2341434	A	G	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	5602679	rs892336	T	C	11181.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	5602790	rs2163946	A	G	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	5602928	rs10838375	G	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr11	5602968	rs10769086	G	A	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	5603163	rs10838377	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5617987	rs12272467	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	5618298	rs146384026	A	ATTTTAT	172.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=34.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	5625603	rs7108470	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	5625784	rs3751005	A	G	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	5625847	rs3751006	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	5653417	rs4287358	AT	GA	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	5655150	rs7941976	T	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	5655233	rs3824951	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	5655722	.	TACACACAC	T,TAC	814.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.416;QD=24.69;ReadPosRankSum=0.625;SOR=1.697;set=HC	GT:AD:AF:DP	1/2:3,11,19:0.33,0.58:33
chr11	5655758	.	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=5.370;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.761;QD=18.76;ReadPosRankSum=2.669;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr11	5655760	rs148996416	C	T	2220.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.375;QD=38.29;ReadPosRankSum=1.540;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr11	5662319	rs7108834	C	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	5662611	rs7128128	T	G	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	5663920	rs66637086	CT	C	1585.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	5664355	.	A	ATATTTT	416.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;QD=34.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5664974	rs7109861	T	C	8374.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	5687320	rs35734937	T	TA	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=2.240;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,41:0.67:61
chr11	5687562	rs10769167	G	C	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5688940	rs11038628	C	T	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5691191	rs4309185	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	5691214	rs2015090	A	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	5700340	rs3740995	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	5717780	rs61735271	C	T	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	5719667	rs2291842	T	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	5719750	rs1063303	G	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	5719848	rs7950912	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5755605	rs1498552	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	5758062	rs7397032	T	C	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	5758118	rs7396766	A	C	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	5776287	rs7936512	C	T	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	5776470	rs7394584	T	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr11	5776484	rs4910844	A	T	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5776623	rs7396938	A	T	5458.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	5777023	rs10742782	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	5777053	rs10742783	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	5809308	rs7934670	A	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	5809477	rs10838637	A	G	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	5809673	rs10769224	C	T	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	5809746	rs10742787	C	T	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	5810080	rs10742788	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	5810103	rs68146349	AAT	A	522.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5817841	rs1453423	C	T	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	5817896	rs1453422	G	A	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	5841856	rs4758435	C	T	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	5862075	rs7946139	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	5862532	rs10742809	A	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	5862653	rs4357719	T	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	5862731	rs10838719	A	G	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	5862780	rs4362172	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	5862845	rs4592451	A	G	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5862937	rs4495918	C	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	5862984	rs10769272	G	C	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	5863013	rs4362173	T	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	5863113	rs10742810	G	A	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr11	5863240	rs4417311	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr11	5863306	rs4363637	G	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	5906048	rs4758168	G	A	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	5906073	rs4757986	G	T	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	5906192	rs1453435	A	C	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	5906205	rs4757987	G	A	10934.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr11	5922707	rs7106300	C	T	6816.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	5923297	rs4601752	A	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	5923419	rs4559671	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5989293	rs7113548	G	A	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	5989415	rs7114672	C	T	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	6007272	rs4237768	A	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	6007613	rs4354673	T	G	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr11	6007680	rs4436524	A	G	8747.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	6007743	rs4436525	A	G	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	6023581	rs11040248	A	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	6023640	rs11040249	T	C	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	6023818	rs10839221	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	6079001	rs4448669	G	A	8052.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	6173346	rs11826453	G	T	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	6173364	rs325695	T	A	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	6220376	rs325610	G	C	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	6221169	rs10839531	A	G	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	6221214	rs11040799	T	A	7464.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	6227083	rs10742968	C	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	6231731	rs10769671	C	T	10346.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-1.807;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:2,399:1.00:401
chr11	6238960	rs3750943	C	A	16620.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:4,624:0.99:628
chr11	6240358	rs73392995	A	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	6243804	rs3750945	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr11	6243843	rs3750946	C	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr11	6243963	rs3750947	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	6243982	rs325606	T	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	6245515	rs325607	T	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	6245555	rs325608	C	T	2284.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.221;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=10.008;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.31;ReadPosRankSum=-1.532;SOR=0.414;set=HC	GT:AD:AF:DP	1/1:3,95:0.97:98
chr11	6281108	rs2929180	T	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr11	6281400	rs11040819	T	C	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	6291466	rs77873910	A	G	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	6292837	rs10839535	CG	GA	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	6340525	rs12570	A	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	6340706	rs1051992	A	G	7284.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr11	6341684	rs2682123	C	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	6411930	.	CCTGGTGCTGGCG	C	9009.73	.	AC=2;AF=1.00;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	6416959	rs1800606	C	T	11765.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	6461277	rs2682099	T	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	6471590	rs78667117	C	T	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr11	6477176	rs139873545	TTAAGGAACGGTACTATCTG	T	233.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	6477455	rs13343175	C	T	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	6477831	rs10606	C	T	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	6478384	rs11605141	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	6478619	rs16913748	G	A	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	6486945	rs74053396	C	T	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	6500264	rs59266898	C	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	6500309	rs2253104	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	6501525	rs74055807	A	C	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	6502636	rs11600431	G	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr11	6502712	rs74055808	A	G	10332.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr11	6502727	rs11604726	C	G	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr11	6549634	.	G	GGT,GGTGT	137.19	.	AC=1,0;AF=0.500,0.00;AN=2;DP=10;set=Intersection	GT:AF:DP	0/1:0.89:9
chr11	6549779	rs4633449	A	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	6549995	rs7480644	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.74;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	6550004	rs2344828	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	6550309	rs2344829	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	6555365	rs7103810	A	G	11096.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	6560141	rs11040914	A	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	6567895	rs11270441	C	CTGCCCTACTGCA	2647.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr11	6578004	rs11600179	G	A	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:4,260:0.98:264
chr11	6579354	rs16915382	G	C	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	6585670	rs16915423	C	T	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	6585838	rs11825255	G	A	6878.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	6587228	rs7947368	G	A	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	6588553	rs56313830	C	T	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	6591380	rs7942310	G	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	6621608	.	G	A	1733.77	.	AC=2;AF=1.00;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	6630028	rs11314683	TC	T	20079.73	.	AC=2;AF=1.00;AN=2;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=32.13;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,625:1.00:625
chr11	6637518	rs7943955	A	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	6637739	.	ATT	A	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.459;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	6651810	rs2659872	A	G	4385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.036;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=0.476;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:1,168:0.99:169
chr11	6654613	rs11040938	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	6703334	rs8109	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	6703764	rs7107519	T	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	6703866	rs12285818	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	6704051	rs16917042	G	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	6704692	rs72894755	G	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	6738872	rs78881688	A	G	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=27.07;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	6739109	rs7112561	G	A	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:3,229:0.99:232
chr11	6739407	rs12284429	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	6739814	rs7114441	C	T	10568.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	6739822	rs7102825	T	C	10911.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	6740308	rs12223353	C	T	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	6741328	rs116475540	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	6789294	rs7924459	G	C	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	6790028	rs10839616	C	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	6790106	rs7102536	T	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	6806393	rs11826041	A	G	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	6806609	rs74328035	T	C	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	6807052	rs79249350	C	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	6807163	rs2659879	C	T	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	6807243	rs497681	G	A	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	6807290	rs11824229	C	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	6866815	rs2741801	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	6898540	rs7938371	G	A	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:3,194:0.98:197
chr11	6898614	rs16919049	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	6898861	rs16919054	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	6913243	rs1965207	TA	CG	8909.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	6942628	rs11605995	A	C	6268.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	6942723	rs77720614	C	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	6942952	rs2035844	T	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	6943179	rs115093724	C	T	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	6943254	rs1388535	C	T	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	6953615	rs35111903	G	A	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	6953859	rs61729853	T	C	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	6964196	rs80109328	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	6965012	rs2515947	C	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	6976988	rs2239731	A	T	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	7022160	rs2857919	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	7059960	rs12801277	A	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	7064447	rs76670455	C	T	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	7070866	rs1552727	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	7071031	rs1552726	G	A	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	7110188	rs7120146	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	7110243	rs7119420	G	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	7110751	rs11041171	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	7260054	rs10839747	A	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr11	7324475	rs4412741	T	C	12038.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	7335424	rs2035639	C	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	7439093	rs4757993	G	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	7570607	rs7122137	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	7570840	.	C	CTT	985.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.597;QD=12.02;ReadPosRankSum=-1.261;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:19,63:0.77:82
chr11	7570898	rs7125594	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	7586738	rs6578874	G	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	7598952	rs6578880	C	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	7618953	rs4758203	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	7619518	rs4758206	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	7619549	rs34347748	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	7642031	rs10769813	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	7642407	rs10839822	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	7649640	rs6578886	C	G	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	7650607	rs6578887	A	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	7662732	rs4643071	C	T	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	7663726	rs4402283	T	C	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	7663779	rs3861066	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	7670249	rs4237757	A	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	7670440	rs4758209	A	G	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	7672272	rs3923491	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	7673015	rs5864	G	A	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	7686596	rs13172	G	A	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	7686674	rs13854	T	C	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	7687715	rs12801394	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	7689029	rs61733057	A	C	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	7689633	rs10743030	A	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	7690685	rs4631871	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	7690737	rs142607450	T	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	7693853	rs144823333	G	GCACA,GCACACA	3407.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=98;set=Intersection	GT:AF:DP	1/2:0.22,0.78:82
chr11	7694169	rs116522734	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	7695401	rs7482385	G	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	7710729	rs4505055	C	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	7710742	rs4365041	A	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.640;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	7710750	rs4277100	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	7712471	rs4509745	C	T	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	7716549	rs4287332	C	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	7716846	rs3925027	C	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.58;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	7716855	rs4528317	T	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.22;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	7717219	rs111491832	A	T	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	7717257	rs3925028	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	7721870	rs10839849	G	A	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	7723171	rs5789540	GA	G	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	7723683	rs4373911	G	A	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	7749971	rs61890084	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	7750373	rs76732002	T	A	8293.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	7750623	rs79683059	G	A	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr11	7794545	rs1482784	C	A	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	7794976	rs980145	T	A	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	7847466	rs1482792	A	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	7847523	rs1482794	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	7949134	rs12273639	T	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	7949192	rs11041669	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	7949350	rs4758258	A	G	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	7950024	rs12272735	A	G	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	7960045	rs6578915	G	A	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	7985027	rs113573836	C	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	8009420	rs12278319	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	8014479	rs4758267	C	T	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	8115699	rs4758289	T	C	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	8115762	rs7396690	C	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	8117228	rs11041739	A	G	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	8118185	rs10160258	C	G	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	8118200	rs7931842	C	A	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	8119063	rs7950355	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	8132735	rs375828244	A	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.49;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	8246181	rs1042359	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	8251803	rs67820061	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	8284838	rs204931	A	G	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr11	8284981	rs176083	A	C	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	8434972	rs3833784	CA	C	1932.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	8483335	rs1900273	G	A	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	8494640	rs11041942	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	8494843	.	T	TA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.901;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr11	8496516	rs2289923	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	8639325	rs4929924	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	8641501	rs7946508	C	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	8641882	rs7943945	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	8642218	rs7950166	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	8644530	rs4929948	T	G	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	8644562	rs10533257	TCATA	T	4317.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	8646237	rs12803166	G	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	8662090	rs11042022	T	C	1274.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=12.268;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.25;ReadPosRankSum=0.148;SOR=2.389;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr11	8662516	rs11042023	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	8669437	rs10840100	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	8670172	rs7950801	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	8732300	.	G	GCA	495.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr11	8736046	rs931757	C	T	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	8788168	rs10743089	A	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	8788225	rs10734637	A	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	8797681	rs72141186	ACG	A	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	8797687	.	GTGCGCGCA	G	431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=1.758;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr11	8797688	rs11042062	T	C	76.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.822;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	8797695	rs11042063	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.153;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	8797701	rs368673080	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.417;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr11	8797703	rs370311923	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.877;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	8797705	rs151193662	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.877;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	8797707	rs145618051	G	A,GCACACACACA	1541.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=49.73;SOR=1.942;set=HC	GT:AD:AF:DP	1/2:0,9,22:0.29,0.71:31
chr11	9004376	.	C	CT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.075;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	9052423	rs7395988	A	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	9072103	rs3751053	C	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	9072140	rs3751052	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	9095967	rs56149362	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	9096086	rs2003885	G	A	9415.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,367:0.99:369
chr11	9112020	rs7484187	T	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	9113002	rs60494098	A	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=25.36;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	9113008	rs142900716	GGCA	G	1932.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	9167399	rs10732517	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	9171536	rs73416057	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	9171775	rs7123970	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	9192336	.	TACAC	T,TAC	1037.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.372;QD=28.83;ReadPosRankSum=0.434;SOR=0.297;set=HC	GT:AD:AF:DP	1/2:1,8,27:0.22,0.75:36
chr11	9198276	rs7394878	T	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	9198409	rs149740044	T	G	10054.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	9199650	rs60693427	C	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	9228785	rs7396439	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	9309405	rs5014247	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	9316937	rs4601780	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	9321399	rs10743101	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.17;QD=24.64;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	9321415	rs11042272	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.14;QD=23.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	9406349	rs4606477	T	C	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	9494461	.	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.212;QD=3.21;ReadPosRankSum=1.534;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr11	9537904	rs10743108	G	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	9597419	.	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	9607032	rs10770042	A	G	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	9724851	rs115356105	C	T	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	9751051	rs34125178	C	CT	293.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=17.28;ReadPosRankSum=-0.996;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr11	9769483	rs34696762	C	T	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr11	9771296	rs16906967	C	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	9771325	rs79863114	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	9771687	rs6483656	G	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	9801925	rs3751000	T	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	9802228	rs360124	G	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	9806914	rs71453928	T	TACTG	2031.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=44.17;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	9812236	rs2645029	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	9830732	rs10770066	A	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	9861009	rs7483882	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	9875353	rs375686	G	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	9878332	rs11322743	AT	A	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.982;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr11	9917620	rs4910073	G	C	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	10518251	rs16907878	G	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	10518289	rs1466426	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	10521572	rs16907919	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	10521850	rs3741039	G	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	10523224	rs12421214	G	A	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	10525919	rs11826750	A	G	165.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr11	10526060	rs7943804	C	T	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	10553324	rs10500727	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	10553672	rs4910154	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	10553675	rs4910155	C	T	223.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	10647702	rs2241489	G	A	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	10655609	rs2162044	C	T	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	10673739	rs4909945	T	C	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	10711918	.	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-3.006;QD=0.44;ReadPosRankSum=0.162;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:86,26:0.23:112
chr11	10773158	rs114369336	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	10776376	rs78660033	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	10778510	rs6484483	T	G	77.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	10791983	rs2132517	G	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	10795493	rs76106715	C	T	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	10796667	rs79355153	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	10820663	.	TA	T	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.720;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.381;QD=2.01;ReadPosRankSum=2.098;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr11	10821055	rs3736327	C	T	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	10821185	rs11542384	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	10822350	rs7951708	C	T	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	10823576	.	C	CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCAGAATTTAACATTTGTTGCCTAA	1895.73	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=947.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	10823815	rs7105210	C	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	10824540	rs10743150	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	10826341	rs2242360	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	10828490	rs11373962	T	TA	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	10829834	rs112385397	G	A	507.85	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr11	10830106	rs7127279	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	10875200	rs2232925	C	T	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	10875701	rs2232922	A	G	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	10876100	rs2232921	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	11314654	rs35037993	G	A	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	11354346	rs901553	T	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	11354393	rs901554	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	11398698	rs10444245	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	11905993	rs10765894	C	T	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	11913585	rs11022079	G	T	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	11954786	rs10741562	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	11958113	.	G	GTT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=-0.484;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr11	11976628	rs7933089	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	11986061	rs3206824	T	C	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	11988442	rs7480026	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	11989899	rs2291599	T	C	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	12225946	rs3763823	T	G	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	12229437	rs16910765	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	12229655	rs2279390	T	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	12231179	rs2046488	G	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	12262476	rs2641936	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	12264140	rs880963	A	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	12313887	rs1874043	C	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	12315186	rs10741578	G	A	9976.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr11	12315407	rs10741579	G	C	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	12315716	rs1493951	C	T	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	12315848	rs1493952	C	T	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	12315891	rs1493953	G	A	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	12315915	rs1493954	A	G	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	12316344	.	G	GCTC	1256.70	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:3,37:0.93:40
chr11	12345459	rs903213	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	12379792	rs10741583	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	12495623	rs7109678	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	12525925	rs11547363	C	T	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	12534808	rs2403631	A	G	9561.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr11	12535415	rs11022380	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	12904464	rs78197764	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	12923434	rs2289436	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	12951926	rs2727360	A	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	13032679	rs10603579	AGG	A	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	13032686	rs11399899	T	TC	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	13398129	rs10741617	T	A	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	13399791	rs10832030	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	13514263	rs6254	C	T	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	13514417	rs694	C	T	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	13716530	rs7130943	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	13984720	rs10741631	A	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	13984749	rs11023039	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	14101493	rs5789820	G	GC	6531.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	14246336	rs2163463	G	A	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	14329984	rs2915408	C	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	14501267	.	GA	G	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.335;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr11	14540671	rs1823466	A	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	14991539	rs5239	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	15096419	rs1540139	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	15198802	.	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=-1.025;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr11	15198806	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.35;ReadPosRankSum=0.619;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr11	15263019	.	A	C	927.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	15263130	.	G	T	5687.77	.	AC=2;AF=1.00;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	15267727	rs1945624	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	16117460	rs3059081	TA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.157;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.152;QD=3.08;ReadPosRankSum=1.119;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr11	16205323	rs7926424	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	16205595	rs1455111	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	16760244	rs1846936	T	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	16847558	rs400458	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	16848077	rs390974	G	A	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr11	16863049	rs369457	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	16863087	rs452745	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	16863223	rs16933529	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	16863362	rs454869	T	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	16863424	rs431208	C	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	16872642	rs6486315	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr11	16874067	rs418113	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	17035493	rs71047521	C	CA	1679.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	17035718	rs61881311	A	G	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	17036012	rs113662255	A	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	17113483	rs7113396	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	17126670	rs2052188	C	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	17172133	rs2302511	T	C	8595.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	17190127	rs144948079	TAAAAAC	T	1010.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	17191019	rs214936	A	G	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	17317600	.	C	G	738.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	17323441	.	A	AT	341.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.10;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	17333377	rs12225041	T	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	17333663	rs2521998	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	17339127	rs2634462	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	17351873	rs34471145	T	TA	1403.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	17352477	rs3842269	TACA	T	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	17373419	rs182060801	C	T	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr11	17394073	rs10832778	C	G	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	17408390	rs193076739	C	T	854.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.167;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.49;ReadPosRankSum=-0.686;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr11	17408404	rs5213	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	17408630	rs5215	C	T	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr11	17409572	rs5219	T	C	9017.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	17410283	rs5222	C	T	14291.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.090;QD=25.66;ReadPosRankSum=-0.944;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:2,555:1.00:557
chr11	17415190	rs4148646	C	G	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	17416878	rs739690	C	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr11	17418445	rs75967811	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	17418477	rs757110	C	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	17429922	rs2106865	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	17434134	rs77655678	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	17435936	rs4148631	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	17435966	rs4148630	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	17436936	rs4148626	A	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	17448704	rs1799854	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	17449269	rs78813404	C	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17449517	rs116419577	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr11	17516029	rs2072226	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	17517381	rs10530940	CAT	C	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	17517407	rs1859824	G	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	17519697	rs2072232	C	G	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	17519864	rs2072233	C	T	7803.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:6,304:0.98:310
chr11	17522810	rs2072234	T	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	17531449	rs2237965	G	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	17532102	rs2237964	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	17533635	rs2190454	G	A	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	17539212	rs10766408	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	17542583	rs2108332	C	T	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	17542586	rs2041031	T	C	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	17542649	rs2041032	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	17545091	rs4757539	A	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	17548239	rs72870320	C	T	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	17548507	rs41282940	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	17548737	rs12795083	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	17554914	rs2240489	G	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	17554914	.	GCC	CCA	1663	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=8;HapScore=1;MGOF=6;MMLQ=27;MQ=60.0;NF=19;NR=27;PP=1663;QD=37.3145190187;SC=CTCAGCACCCGCCCCCATAGC;SbPval=0.65;Source=Platypus;TC=48;TCF=21;TCR=27;TR=46;WE=17554924;WS=17554904;set=Platypus	GT:AD:AF:DP	1/1:2,46:0.96:48
chr11	17554916	rs2355022	C	A	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	17569885	rs58569858	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	17574570	rs183046885	A	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	17574588	rs4757543	T	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	17578693	rs61910753	G	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	17582470	rs1990180	T	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	17591961	rs10832802	C	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	17593709	rs7106548	T	C	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	17594513	rs1076312	A	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	17596313	rs4757548	G	A	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr11	17598187	rs4756901	G	A	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	17598191	rs4756902	G	A	13330.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	17600033	rs2355466	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	17612972	rs720460	T	G	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	17627613	rs7934079	G	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	17631751	rs2041028	C	T	14252.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	17632306	rs1003490	C	T	19057.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,734:1.00:734
chr11	17632651	rs7111528	C	T	12109.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:3,473:0.99:476
chr11	17633012	rs731783	T	C	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	17653572	rs2058003	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	17655839	rs12277962	A	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr11	17661123	rs7928233	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	17663444	rs10832824	C	T	14728.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=1.666;SOR=0.378;set=HC	GT:AD:AF:DP	1/1:1,589:1.00:590
chr11	17663742	rs2023483	G	C	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	17742681	rs10832853	G	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	17899795	rs35473390	TA	T	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.651;QD=13.06;ReadPosRankSum=-1.492;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr11	17981047	rs211146	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	18034592	rs3741202	G	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	18034605	rs3741201	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	18044304	rs211101	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	18063977	rs623580	A	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	18111692	.	A	ATT	2257.73	.	AC=2;AF=1.00;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	18127679	rs871699	T	C	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	18158993	rs12291017	T	C	8727.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr11	18159169	rs2468839	A	G	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	18159254	rs4274188	A	G	12608.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	18159342	rs28482781	T	G	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	18159406	rs28628238	C	G	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	18159801	rs28624183	C	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	18195051	rs2445179	T	C	9104.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	18195227	rs78287429	G	A	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	18210480	rs2445150	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	18231196	rs200895791	A	AG	2452.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=35.04;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	18231433	rs7128173	GG	AC	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	18231459	rs7129094	C	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	18231734	rs111282134	A	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	18231749	rs2468789	T	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	18253176	rs2460827	C	T	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	18261478	rs77194104	G	T	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	18261500	rs111333947	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	18261687	rs77576342	A	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	18261736	rs79121278	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	18261931	rs74821234	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	18264248	rs73424352	G	C	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	18264428	rs76181420	A	T	1322.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=0.877;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr11	18267027	rs2468844	C	T	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	18267112	rs2445173	A	G	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr11	18267353	rs2445172	A	G	372.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.22;QD=41.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	18267356	rs2445171	A	G	452.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.66;MQRankSum=1.286;QD=41.16;ReadPosRankSum=1.436;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr11	18267373	rs1671927	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	18267471	rs1136766	A	G	2770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=47.76;MQRankSum=-3.825;QD=10.70;ReadPosRankSum=0.076;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:118,141:0.54:259
chr11	18267651	rs80208174	A	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	18290880	rs28720026	C	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.25;QD=27.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	18314579	rs10665418	C	CTT	1387.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	18318287	rs11024607	G	A	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	18318550	.	C	CA	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.63;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	18319180	rs7128017	G	T	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	18319279	rs7128146	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	18327648	rs7122032	T	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	18327684	rs1140047	G	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	18330385	rs35952141	G	GA	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	18333061	rs11024618	T	A	102.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-0.253;QD=10.24;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	18354877	rs4150561	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	18357180	rs4150579	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	18359983	rs111946613	ATGTT	A	99.25	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	18379629	rs4150661	C	A	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	18422113	rs5790035	C	CA	88.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	18424451	rs5030621	C	T	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	18424487	rs4820	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr11	18424590	rs3758680	T	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	18426354	rs10684351	C	CAAAAAAAAAA	693.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;QD=49.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	18426656	rs6486424	A	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	18426796	rs6486425	T	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	18428552	rs56345574	C	CA	424.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	18428637	rs113340412	A	ATTT,ATTTT	5290.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.93;QD=35.27;SOR=0.802;set=HC	GT:AD:AF:DP	1/2:0,49,101:0.33,0.67:150
chr11	18434536	rs10766477	T	C	148.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=12.41;ReadPosRankSum=1.269;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr11	18456235	rs4757664	A	T	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	18467821	rs2658565	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	18487425	rs2658563	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	18503306	rs8018	G	A	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	18548574	rs1857908	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	18557825	rs56811637	T	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	18568542	rs34242612	A	T	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	18591715	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.275;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr11	18610365	rs7106180	C	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	18720304	rs7946446	C	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	18723477	rs7945285	T	C	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	18730895	rs11024768	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	18732426	rs4237728	T	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	18733521	rs7128042	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	18733579	rs10832972	T	C	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	18735321	rs10766493	A	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	18735396	rs10741752	G	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	18735753	rs7106673	G	A	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr11	18735947	rs7125943	T	C	9279.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	18736247	rs4265581	G	A	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr11	18736942	rs3887900	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	18737095	rs4424652	C	T	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	18738281	rs10766494	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	18738603	rs10766495	G	A	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	18751041	rs1550870	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	18763698	rs4757706	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	18764048	rs373288525	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr11	18764087	rs2278733	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	18770822	rs921082	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	18771041	rs2028897	G	C	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	18885067	rs36002518	C	T	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	18955744	rs11599929	C	T	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:245,262:0.52:507
chr11	18956194	rs2014931	T	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:176,134:0.43:310
chr11	18956226	rs11024885	T	C	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:259,193:0.43:452
chr11	18978456	rs7106147	G	A	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr11	18994005	rs7114481	T	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	19077755	rs11024969	A	C	3797.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.65;ReadPosRankSum=0.758;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,86:0.99:87
chr11	19077765	rs10833049	T	C	3901.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.51;ReadPosRankSum=-0.168;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr11	19077904	rs11024970	T	G	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr11	19078022	rs10833050	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	19138953	.	G	A	217.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	19169319	.	TC	T	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=37.570;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.569;QD=4.27;ReadPosRankSum=-2.580;SOR=0.005;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr11	19194141	rs7111850	T	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	19204403	rs45549043	A	G	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	19207865	rs45582433	G	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	19247033	rs368385670	G	A	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr11	19251289	rs12273001	C	G	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	19251704	rs12273302	G	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	19256250	rs793269	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	19372616	rs10655705	G	GGA	2971.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	19735987	rs2278132	A	G	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	19798951	.	CTT	CT,C	435.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=42;set=Intersection	GT:AF:DP	0/1:0.82:39
chr11	19798982	.	T	A	3503.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.22;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	19798983	.	C	A	3503.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	19854018	rs11413238	C	CT	2934.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr11	19854088	rs6483617	G	A	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr11	19914159	rs57575249	G	A	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	19955500	rs1372989	A	G	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	19961457	rs11423145	C	CT	332.76	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	19970558	rs2585773	T	C	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	19970579	rs2707084	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	20005845	rs35295670	GC	G	1316.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	20057371	rs6483634	T	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	20066457	rs117512417	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	20067064	rs7125647	C	T	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	20072779	rs6483635	C	T	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	20089978	rs1442709	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	20099041	rs150099920	T	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	20099121	rs79792934	A	G	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	20101744	rs1867115	C	A	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	20112492	rs1837971	G	A	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	20124914	rs2243411	A	C	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	20139632	rs2245836	G	C	7558.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	20404502	.	CTT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.069;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	20411199	rs10542415	TA	T	206.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-2.048;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr11	20429454	rs10741836	T	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	20448531	rs12797994	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	20485947	.	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=2.769;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	20515555	rs6483697	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	20529886	rs6483700	G	A	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	20622975	rs1443547	G	A	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	20623042	rs1443548	T	C	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	20623156	rs1443549	C	G	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	20628479	rs2278649	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	20639400	rs7925597	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	20639479	rs11827415	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	20648162	.	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.948;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr11	20648418	rs4923548	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	20660271	rs12284342	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	20676417	rs1401793	C	T	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	20699394	rs1793003	C	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	20939755	rs35809043	T	G	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	20949952	rs8176795	C	T	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	21305927	rs4151053	T	C	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	21306113	rs4151054	A	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	21555780	rs61194030	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	21581665	rs7119475	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	21592507	rs8176793	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	21594598	rs75226974	C	T	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	21596604	rs8176797	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	21596638	rs80344018	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	22214822	rs73479393	G	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	22214877	rs139514865	A	AAGGAGGAGGGGAATGAGGAGGAGG	4207.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	22214903	rs12792259	G	C	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	22215142	rs112145196	G	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr11	22233026	rs77546698	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	22239661	.	T	TCACACACACACACA,TCACACACACACACACA	1058.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;set=Intersection	GT:AF:DP	1/2:0.39,0.61:23
chr11	22242729	rs4312063	T	C	913.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.43;ReadPosRankSum=2.302;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr11	22248832	rs146983312	CT	C	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	22257909	rs11026471	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	22271968	rs80083989	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	22272059	rs148611587	AC	A	320.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	22364321	rs1447512	C	T	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	22364744	rs2246710	G	A	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr11	22391534	rs2665677	G	A	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	22397739	rs2248436	A	C	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	22398830	rs1374718	A	G	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	22399187	rs1971865	C	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr11	22696451	rs922571	A	G	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	22849361	.	T	TTTTTTTTTTTTTTTTTTTGAGACGG	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=-0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.000;QD=8.84;ReadPosRankSum=0.595;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	22849363	.	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.000;QD=13.28;ReadPosRankSum=-1.645;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,1:0.10:10
chr11	22851409	rs2286810	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	22880923	rs150139651	G	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	22882066	.	A	G	3038.77	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	24750842	rs7128434	G	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	24753629	rs12286199	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	24935954	rs73444432	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	24998252	rs376072954	CAA	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=20.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.650;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr11	26353991	.	TA	T	443.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.504;QD=13.45;ReadPosRankSum=0.743;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr11	26547348	rs430563	G	A	206.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	26547353	rs410617	T	G	206.84	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.71;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	26552702	rs293937	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	26559079	.	A	G	5403.77	.	AC=2;AF=1.00;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	26574776	rs371643222	TG	T	2583.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	26574783	rs56325113	G	T	747.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.805;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:7,56:0.89:63
chr11	26584625	rs444178	C	A	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	26587133	rs293980	T	C	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	26588804	rs293976	C	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	26645894	rs1012552	A	T	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	26656748	rs116688288	A	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	26677867	rs10835050	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:4,129:0.97:133
chr11	26677947	rs10835051	C	T	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	26694812	rs4278475	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	26694842	rs4551716	C	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	26694979	rs4369354	A	G	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr11	26702664	rs10734383	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	26714193	rs369357804	C	T	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	26742866	rs73438443	G	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	27077118	rs10767598	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	27078611	rs60041119	T	TAAAAAA	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	27114659	rs72878446	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	27147365	.	C	A	1134.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr11	27362917	rs12282639	C	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	27384448	rs138931796	TTCATCCACGTCTTCCTCA	T	19941.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.359;QD=43.64;ReadPosRankSum=0.490;SOR=0.192;set=HC	GT:AD:AF:DP	1/1:5,452:0.99:457
chr11	27390089	rs2447997	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	27390476	rs12291757	A	G	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	27393813	rs2448001	G	A	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr11	27393886	rs12284579	G	A	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	27398015	rs76387311	T	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	27401743	rs2472623	A	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	27401940	rs2472622	T	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	27402380	rs11029987	G	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	27412782	rs61648905	CTT	C	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.95;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr11	27413855	rs1871251	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	27414071	rs3085383	GA	G	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=2.146;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr11	27679662	rs2353512	T	C	10718.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr11	27910923	rs6484341	T	A	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	27912152	rs144693558	C	G	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	28057957	rs10458896	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	28083890	rs11030202	G	T	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	28110151	rs12272419	T	C	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	28134974	rs60970073	C	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	28143882	rs9988877	G	A	62.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	30253318	rs611246	A	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	30253641	rs609896	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	30255185	rs6169	C	T	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	30352473	rs35824273	C	CAG	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	30353024	rs3858431	A	G	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	30358032	rs149772521	CCT	C	269.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.560;QD=12.24;ReadPosRankSum=-1.166;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr11	30438948	rs492604	C	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	30438958	rs11354702	CT	C	774.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.99;ReadPosRankSum=2.759;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr11	30602038	rs75683911	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=26.45;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	30925005	rs12284338	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	31159427	rs75027848	G	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	31327316	rs2616815	C	T	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	31327836	rs16922066	A	C	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	31329168	rs74994629	G	A	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	31329448	.	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,61:0.47:130
chr11	31395727	rs628174	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	31447933	rs11304706	TA	T	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.77;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	31458730	rs7479413	T	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	31478058	rs1223067	T	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	31561110	rs144137362	GA	G	78.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	31561446	rs7108250	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	31616504	rs7117463	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	31648529	rs2273943	G	A	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	31653956	rs4922872	C	A	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	31669239	rs7102844	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	31669512	rs7117653	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	31811460	.	C	CT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.779;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr11	31815082	rs115833025	G	A	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	31821686	.	G	T	650.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	31838252	rs5790869	C	CG	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	32113057	rs223045	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	32118925	rs223073	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	32122003	rs2281411	C	A	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	32122020	rs2073223	T	G	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	32122268	rs223065	C	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	32124685	rs223059	G	A	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	32125855	rs223058	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	32410774	rs1799937	A	G	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	32414333	rs2234593	G	T	2425.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.666;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=24.75;ReadPosRankSum=-0.731;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr11	32437902	rs2234588	G	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	32437914	rs2234587	T	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	32439038	rs2295081	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	32449486	rs1799933	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	32449799	rs5030166	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	32450244	rs113549930	C	CG	759.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr11	32451920	rs66798575	T	G	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	32451920	.	TG	GC	62	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=0.9998;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=62;QD=38.4892916207;SC=TTGCCCGGAGTGAAGGCCGAA;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=32451929;WS=32451915;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	32451921	rs72893517	G	C	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	32456298	rs2234583	G	A	2188.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=9.358;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.54;ReadPosRankSum=2.246;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr11	32456694	rs2234582	C	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	32460464	rs6508	G	A	7577.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr11	32460624	rs3087923	G	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	32608473	rs201881	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	32610177	rs114184976	C	G	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	32610388	rs201877	A	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	32610726	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.808;QD=2.13;ReadPosRankSum=0.810;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	32610968	rs201876	T	C	137.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.26;QD=19.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	32615352	rs66536432	A	AT	983.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=26.59;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	32623419	rs77379922	C	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	32624405	rs201893	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	32657266	rs201854	T	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	32674627	rs172101	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	32874926	rs11032025	G	A	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	32949463	rs146740108	A	AT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.786;QD=9.51;ReadPosRankSum=1.160;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr11	32954344	rs1022586	G	A	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	32956244	rs7940077	A	G	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr11	32975807	rs115993935	G	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	32979375	rs114802154	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	33360886	rs5790925	AT	A	1968.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	33569226	rs58255061	G	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	33581153	rs2076627	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	33581306	rs2281380	G	A	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	33596316	rs61735318	C	T	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	33628117	rs2076625	A	C	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	33631423	rs2076622	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	33640104	rs768474	A	C	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr11	33667333	rs1033543	A	G	10282.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	33667596	rs1033542	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	33689652	rs61736869	G	A	8557.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	33689797	rs73479273	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	33719821	rs831611	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	33763682	rs3794200	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	33768086	rs7120610	T	G	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	33771969	rs57966527	T	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	33773161	rs7479064	G	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	33790268	rs1915894	G	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	33886294	rs2038602	A	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	33886416	rs2038603	C	T	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	33891357	rs11032432	G	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	34093349	rs10718447	AT	A	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	34101452	.	GTTTTTTTTTTTTTTTTT	G	258	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=0.9996;HP=20;HapScore=2;MGOF=1;MMLQ=19;MQ=40.55;NF=0;NR=1;PP=258;QD=261.0;SC=GCATGACAAAGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=1;WE=34101476;WS=34101442;set=Platypus	GT:AD:AF:DP	1/1:2,1:0.33:3
chr11	34107785	rs4755360	G	A	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	34113717	rs2982592	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	34135183	.	CAA	C	244.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=7.20;ReadPosRankSum=0.974;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr11	34149199	rs2957512	T	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	34152939	rs2957516	T	C	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	34154641	rs2957518	C	T	10808.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	34158411	rs2982615	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	34158431	rs2957521	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	34162834	rs58807285	CAT	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	34163705	rs2982612	T	C	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr11	34173967	rs116440254	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	34176214	rs2957525	A	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	34188982	rs7120749	A	G	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	34189564	rs4756111	A	G	8487.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.641;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=12.159;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.71;ReadPosRankSum=-0.445;SOR=0.038;set=HC	GT:AD:AF:DP	1/1:5,353:0.99:358
chr11	34226041	rs2955944	A	G	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	34460704	rs10836235	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	34470679	rs769218	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	34482908	rs769217	C	T	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	34492443	rs17881488	C	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr11	34492747	rs12803540	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	34643780	rs286920	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr11	34673051	rs4987414	AG	A	3047.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,132:0.53:250
chr11	34673053	rs201988979	A	T	5322.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,136:0.54:253
chr11	34678356	rs75156053	T	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr11	34678433	rs447228	C	T	3981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.784;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:190,109:0.36:299
chr11	34678433	.	CGC	TGG	1726	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=28;MMLQ=24;MQ=60.0;NF=34;NR=25;PP=1726;QD=30.1604724553;SC=GTCAATTAAACGCCTCTCATT;SbPval=0.54;Source=Platypus;TC=151;TCF=87;TCR=64;TR=59;WE=34678443;WS=34678423;set=Platypus	GT:AD:AF:DP	0/1:92,59:0.39:151
chr11	34678435	rs435537	C	G	3981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=1.029;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:192,110:0.36:302
chr11	34680400	rs286891	T	A	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:179,201:0.53:380
chr11	34904399	rs2288667	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.184;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:116,29:0.20:145
chr11	34904509	rs2288668	T	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	34905145	rs2303957	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	34909827	rs35393135	GA	G	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	34909833	rs61752923	A	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr11	34909926	rs1571133	T	G	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.316;QD=5.96;ReadPosRankSum=-0.183;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:155,90:0.37:245
chr11	34911967	rs2303958	T	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=-0.566;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	34912013	rs2303959	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr11	34916484	rs1326940	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,11:0.22:50
chr11	34916710	rs1326941	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	34918273	rs34774694	G	GCAA	1441.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:91,42:0.32:133
chr11	34918375	rs2986429	A	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	34918569	rs12290759	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr11	34937813	rs2956114	G	A	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.069;QD=5.18;ReadPosRankSum=0.202;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:319,151:0.32:470
chr11	34937884	rs2956113	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:280,153:0.35:433
chr11	34937901	rs2956112	A	G	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr11	34937931	rs2956111	G	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:163,79:0.33:242
chr11	34938001	rs113073242	A	G	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,76:0.71:107
chr11	34938071	rs139999735	GGGC	G	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr11	34938079	rs375130125	G	C	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr11	34938115	rs2956110	C	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr11	34938199	rs3818401	C	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr11	34938265	rs2956109	C	T	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	34938265	.	CGGCC	TGGCC,TGGCT	493	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=24;MQ=60.0;NF=44,22;NR=28,14;PP=493,476;QD=7.33015572982;SC=TGGGCTTCCCCGGCCGCCGAA;SbPval=0.57;Source=Platypus;TC=73;TCF=44;TCR=29;TR=72,36;WE=34938277;WS=34938255;set=Platypus	GT:AF:DP	0/1:0.99:73
chr11	34938269	rs1049306	C	T	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-1.087;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:64,115:0.64:179
chr11	34938310	rs1049307	T	C	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:110,162:0.60:272
chr11	34938456	rs3818397	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	34953055	rs12289218	C	A	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=0.687;QD=10.67;ReadPosRankSum=-1.136;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:47,55:0.54:102
chr11	34953088	rs11032932	G	T,GT	502.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.77;MQRankSum=1.285;QD=13.96;ReadPosRankSum=-0.074;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:3,10,23:0.28,0.64:36
chr11	34963224	rs2915190	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	34963416	rs2986407	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	34963459	rs11032942	T	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr11	34978873	rs147205484	CTACT	C	521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.713;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	34978892	rs2243948	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.897;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	34982141	rs7924969	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr11	34982146	rs2732554	T	G	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.225;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr11	34982146	.	TTC	GTA	764	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=10;PP=764;QD=81.7467874862;SC=AAAGAGCTTATTCAGTCTTAA;SbPval=1.0;Source=Platypus;TC=33;TCF=2;TCR=31;TR=10;WE=34982156;WS=34982131;set=Platypus	GT:AD:AF:DP	0/1:23,10:0.30:33
chr11	34982148	rs2767036	C	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.061;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr11	34988343	rs61760973	T	C	7375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=1.154;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:152,346:0.69:498
chr11	34988405	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.266;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr11	34991727	rs497582	T	C	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.184;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:221,132:0.37:353
chr11	34999484	rs733567	G	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	34999747	rs11032962	A	G	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	34999861	rs11032963	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	35198032	rs4756195	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	35198108	rs4756196	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	35223158	rs11033025	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	35226155	rs9666607	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	35229673	rs1467558	T	C	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	35229856	rs12280375	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	35231627	rs7130549	T	C	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	35336488	rs7103913	C	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	35344345	rs7115450	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	35441682	.	A	AT	153.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.970;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	35453796	rs11344760	GC	G	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	35641428	rs12286850	G	A	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	36031593	rs262404	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	36103228	rs1138807	A	G	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,262:0.99:264
chr11	36293048	rs7107433	G	A	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	36298555	rs2289986	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	36298878	rs2289985	G	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	36300230	rs2305168	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	36311060	rs8181552	G	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr11	36397634	rs146274537	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	36422679	rs9630171	G	A	8705.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-1.926;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,339:0.99:341
chr11	36422792	rs330261	G	A	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	36425013	.	GT	G	59.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.66;ReadPosRankSum=-2.200;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	36453506	rs746761	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	36459136	rs116106181	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	36484208	rs514352	T	C	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr11	36595600	rs3740955	A	G	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	36612090	rs1818545	C	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	36631711	rs61745970	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	36655049	rs144097691	C	CA	229.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=20.88;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	36657537	rs372229008	CTT	C	725.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	36669778	rs1566245	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	40137543	rs2953310	T	C	7795.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	42209105	rs11416548	G	GA	1861.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:8,97:0.92:105
chr11	42209292	rs901894	T	G	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:89,213:0.71:302
chr11	42259582	rs148773222	CCTCGATTCA	C	1875.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,82:0.62:132
chr11	42259733	rs74433896	G	A	6052.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:155,283:0.65:438
chr11	42261218	rs74906444	G	A	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr11	42261474	rs12272956	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	43333857	rs5743213	G	A	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	43340076	rs5743215	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	43358060	rs73547391	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	43400989	.	C	T	556.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr11	43401008	.	A	ATG	192	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=2;MGOF=16;MMLQ=21;MQ=55.63;NF=0;NR=5;PP=192;QD=39.4;SC=ACTACCTGCAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=5;WE=43401016;WS=43400998;set=Platypus	GT:AD:AF:DP	1/1:4,5:0.56:9
chr11	43401031	rs201589301	T	TG	468.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	43401032	.	T	TG	468.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	43413028	rs12099204	A	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	43413157	rs202071795	TTTGCG	T	31.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.386;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.477;QD=0.47;ReadPosRankSum=1.042;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr11	43413158	rs67884453	TTGCG	T	561.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.506;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr11	43419087	rs59435306	C	CT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.507;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-2.476;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr11	43419451	.	CGTGTGTGTGTGTGTGTGT	C,CGT	1273.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=7.782;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=2.666;QD=35.38;ReadPosRankSum=0.842;SOR=0.948;set=HC	GT:AD:AF:DP	1/2:2,12,22:0.33,0.61:36
chr11	43472895	rs6485426	G	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	43511620	rs61071323	T	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	43511629	rs76482381	G	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.40;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	43515304	rs12276980	C	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	43702581	rs4573669	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	43702615	rs4573668	G	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	43876435	rs3736505	A	G	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	43876698	rs11555762	C	T	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	43905484	rs2271817	T	G	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr11	43908104	rs3740983	T	G	3273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.935;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:76,151:0.67:227
chr11	43911365	rs2434478	T	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	43940566	rs7926534	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	43940644	rs1048928	G	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr11	43941423	rs191649154	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr11	43946967	rs1973717	A	G	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:53,113:0.68:166
chr11	43947990	rs12797684	T	C	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,71:0.68:104
chr11	43954812	rs2434476	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	43964842	rs7077	G	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-2.241;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr11	44069883	rs77451436	G	A	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:265,142:0.35:407
chr11	44072850	rs115037013	C	T	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:85,269:0.76:354
chr11	44074509	rs76056213	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:126,53:0.30:179
chr11	44074905	rs7106872	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr11	44076870	rs79306560	C	T	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr11	44079831	rs12275640	A	G	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=7.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.530;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:33,71:0.68:104
chr11	44080210	rs2074051	T	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	44089161	rs178514	G	A	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr11	44089352	rs33952257	G	A	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	44096238	rs178521	G	A	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.525;QD=14.67;ReadPosRankSum=-0.248;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:43,98:0.70:141
chr11	44096322	.	CTT	C	211.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=1.465;QD=30.25;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr11	44096330	rs61491891	C	T	220.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=1.465;QD=31.54;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr11	44096334	.	C	T	220.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=1.282;QD=44.16;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	44096997	rs57239017	G	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr11	44098985	rs2074043	G	A	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:72,125:0.63:197
chr11	44101060	rs373085784	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:157,65:0.29:222
chr11	44104701	rs79395013	C	CCT	3695.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:68,101:0.60:169
chr11	44104941	rs77687574	C	T	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:92,198:0.68:290
chr11	44104981	rs3107275	C	T	5509.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:128,247:0.66:375
chr11	44130646	rs141802432	T	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	44146256	rs200495080	C	CG	903.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr11	44146257	.	A	T	912.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr11	44151457	rs7125352	T	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	44257708	rs151110171	GGT	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.904;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:92,15:0.14:107
chr11	44297054	rs10769028	T	C	20187.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,783:1.00:783
chr11	44297253	rs11037929	A	G	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	44297343	rs11037930	C	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	44585933	rs934178	T	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:20,73:0.78:93
chr11	44608866	rs7930303	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	44609129	rs7118753	T	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,79:0.75:105
chr11	44609198	rs7102843	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	44616325	rs369693288	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:134,62:0.32:196
chr11	44640268	rs1139971	A	G	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-0.678;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:224,111:0.33:335
chr11	44919327	rs835865	C	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:94,157:0.63:251
chr11	44925359	rs11456363	C	CT	2683.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:206,99:0.32:305
chr11	44940873	rs11038214	G	A	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:171,280:0.62:451
chr11	44948052	rs835988	G	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr11	44950664	rs11820442	C	T	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	44950784	rs835990	G	A	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	44952495	rs7124137	G	A	5565.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:178,267:0.60:445
chr11	44956582	rs116118673	T	G	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:59,188:0.76:247
chr11	44956604	rs77647154	A	C	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:32,113:0.78:145
chr11	44956670	rs79100662	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr11	44956978	rs76532463	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr11	44957216	rs75542152	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:96,154:0.62:250
chr11	44959061	rs2279361	C	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=1.838;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:98,42:0.30:140
chr11	44959206	rs2279362	C	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	44959924	rs2306666	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:183,73:0.29:256
chr11	45203848	rs1078931	G	A	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.480;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:293,156:0.35:449
chr11	45204071	rs1078930	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr11	45234877	rs11038356	T	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:268,128:0.32:396
chr11	45235434	rs58590291	G	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr11	45672090	rs143571003	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr11	45793154	rs3740704	A	C	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.836;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:274,108:0.28:382
chr11	45793218	rs2666891	G	C	11465.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	45827350	rs3808976	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr11	45832262	rs111402424	CCTT	C	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr11	45832295	rs7127456	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr11	45834044	rs4756027	C	T	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	45834198	rs7943306	T	C	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:185,96:0.34:281
chr11	45877529	rs2292913	A	G	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	45877712	rs75521198	A	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr11	45883914	rs4755343	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	45891508	rs4755345	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	45892275	rs115313535	G	A	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:64,123:0.66:187
chr11	45923660	rs111580701	C	G	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:657,284:0.30:941
chr11	45924551	rs61731887	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	45925775	rs112012761	A	G	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=5.126;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.619;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:244,88:0.27:332
chr11	45925811	rs112993823	G	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=11.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=1.086;SOR=1.783;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr11	45925825	rs111694968	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr11	45926445	rs2271847	T	C	25995.77	.	AC=2;AF=1.00;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	1/1:2,1023:1.00:1025
chr11	45926671	rs111382432	C	T	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.029;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:138,62:0.31:200
chr11	45931740	rs16938413	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr11	45935384	rs1132349	A	G	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr11	45935527	rs2271846	T	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:12,67:0.85:79
chr11	45936035	rs3802758	G	A	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	45936935	rs77810404	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr11	45937267	rs10742772	C	T	33058.77	.	AC=2;AF=1.00;AN=2;DB;DP=1297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,1280:1.00:1280
chr11	45938561	rs58409282	T	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.782;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:98,44:0.31:142
chr11	45944761	rs116284578	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	45944994	rs33927614	G	GC	3854.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	45945169	rs113124760	T	A	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,111:0.42:265
chr11	45949201	rs884668	C	T	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	45949534	rs939105	C	T	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.058;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:341,120:0.26:461
chr11	45959669	rs10742773	C	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	46105688	rs2932515	G	A	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	46331806	rs10629837	T	TTTTG	2267.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=42.79;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	46332893	rs4625425	T	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr11	46338977	rs60813863	C	T	7785.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:171,361:0.68:532
chr11	46342081	rs67946579	TG	T	5043.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	46342210	rs73464033	G	A	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:72,147:0.67:219
chr11	46342259	rs79068197	A	AG	21269.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	46342283	rs73464035	T	G	9224.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:254,434:0.63:688
chr11	46355072	rs111324926	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	46387868	rs1317826	A	G	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	46387883	rs11820791	T	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:74,136:0.65:210
chr11	46388024	rs11827702	G	A	5065.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:76,230:0.75:306
chr11	46389448	rs11038876	G	C	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:116,174:0.60:290
chr11	46391602	rs12575519	T	G	6440.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:168,288:0.63:456
chr11	46392825	rs10838601	C	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr11	46393958	rs7936413	T	C	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,123:0.65:189
chr11	46395843	rs75597153	G	T	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:429,163:0.28:592
chr11	46396479	rs2046768	T	C	5758.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:158,271:0.63:429
chr11	46397323	rs3740974	A	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	46398916	rs34406563	T	C	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:72,128:0.64:200
chr11	46399538	rs2279465	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr11	46399901	rs11038880	A	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr11	46400258	rs11827909	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr11	46404352	.	C	CG,CCG	1471.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;MQRankSum=0.000;QD=22.64;ReadPosRankSum=-0.842;SOR=2.342;set=HC	GT:AD:AF:DP	1/2:16,25,24:0.38,0.37:65
chr11	46406767	rs2067482	G	A	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.609;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:528,235:0.31:763
chr11	46406857	rs2229163	G	A	11927.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:259,561:0.68:820
chr11	46515902	rs3802888	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.674;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr11	46534546	rs3802890	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	46567475	rs61882746	C	T	365.78	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	46569434	.	C	CA	900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.345;QD=7.04;ReadPosRankSum=-0.728;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:53,75:0.59:128
chr11	46625035	rs11038934	T	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr11	46678462	rs150786219	C	CACACAT	718.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr11	46678478	rs367595606	TAC	T	761.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr11	46689930	.	C	T	205.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	46694178	rs12276664	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr11	46694313	rs67065551	GTC	G	7022.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	46699494	rs34845803	GA	G	75.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.240;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr11	46699495	rs11038968	A	G	379.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.684;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.837;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr11	46701765	rs61752936	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:325,139:0.30:464
chr11	46702608	rs113273807	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:78,142:0.65:220
chr11	46702920	rs4268467	T	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr11	46722476	rs60105423	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr11	46722731	rs4752928	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	46724289	rs4297419	C	G	2085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.146;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:326,139:0.30:465
chr11	46742426	rs3136435	G	A	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.372;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:250,84:0.25:334
chr11	46744989	rs3136452	C	T	7760.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:229,383:0.63:612
chr11	46750819	rs3136474	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr11	46760466	rs3136515	G	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	46776697	rs4237546	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	46781718	rs10466476	A	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.611;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	46784697	rs7928445	A	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr11	46789346	.	G	GTT	62.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	46799174	rs11300195	GC	G	903.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr11	46802094	rs6485691	C	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	46812227	rs7940578	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	46822686	rs10734549	C	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr11	46837625	rs59649961	AC	A	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=44.99;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	46837633	rs58152993	AT	A	1288.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=42.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	46842841	rs7106323	C	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:151,82:0.35:233
chr11	46889713	rs2306026	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr11	46889719	rs12273360	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr11	46890165	rs3816614	C	T	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:109,184:0.63:293
chr11	46897995	rs964551	G	T	4399.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:89,201:0.69:290
chr11	46911457	rs2306035	T	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr11	46911704	rs2306036	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr11	46914526	rs61741501	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr11	46914583	rs10838631	T	C	7338.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	46914598	rs10769215	A	G	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr11	46916995	rs116739830	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr11	46917868	rs7926667	A	G	6115.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:126,288:0.70:414
chr11	46917983	rs898604	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.069;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr11	46918529	rs879721	C	T	4171.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:128,196:0.60:324
chr11	46918577	rs879720	G	A	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:66,87:0.57:153
chr11	46924404	rs61742974	G	C	6676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.573;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.907;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:157,325:0.67:482
chr11	46939747	rs10437654	C	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr11	46969616	rs2867207	T	C	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	47009041	.	G	GT	249.74	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	47074090	.	T	TTTCC	2192.73	.	AC=1;AF=0.500;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr11	47187067	rs7117346	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.478;QD=2.11;ReadPosRankSum=1.964;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr11	47187071	rs377653037	GA	G	826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.262;QD=11.98;ReadPosRankSum=-0.854;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:30,39:0.57:69
chr11	47188314	rs4752820	T	C	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	47188411	rs3740691	C	T	10031.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	47203983	rs7106654	G	A	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:273,151:0.36:424
chr11	47204175	rs2279438	A	T	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	47204260	rs146360819	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:144,64:0.31:208
chr11	47236568	rs4647707	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:106,49:0.32:155
chr11	47238522	rs326212	T	C	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	47238665	rs326211	A	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	47254602	rs4647744	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	47256708	rs2306353	C	T	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	47260272	rs2013867	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	47260319	rs901746	A	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	47266808	rs2242261	T	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	47267408	rs142614591	C	CGTGTGTGT	860.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=61.48;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	47269159	rs4752973	T	C	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	47269936	rs7118396	C	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	47270255	rs2167079	C	T	10492.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr11	47282024	rs2279238	C	T	9949.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	47300429	rs4752977	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	47303401	rs67549682	C	CTTTTTTTTTTTT	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;QD=39.25;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	47305669	rs3816725	T	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	47306585	rs1051006	G	A	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	47307332	rs148495681	G	GTCATTA	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	47308192	rs3889096	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr11	47311367	rs10838686	G	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47331116	rs1017594	T	C	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	47346145	rs2290148	G	A	20591.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,778:1.00:778
chr11	47350287	rs2305280	G	A	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:41,103:0.72:144
chr11	47350553	rs10838693	G	C	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	47353498	rs2290146	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	47354068	rs3729802	G	A	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr11	47354787	rs1052373	C	T	7666.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	47359046	rs3729952	G	A	11453.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:253,525:0.67:778
chr11	47359503	.	CTT	C	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.086;QD=11.36;ReadPosRankSum=0.000;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr11	47361084	rs2856653	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	47362431	rs2697926	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	47362465	rs10769254	G	C	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	47364762	rs896818	A	G	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	47365223	rs11570073	T	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr11	47380061	rs10734557	A	C	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	47380276	rs35282035	G	GCA	6598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.261;QD=20.30;ReadPosRankSum=2.169;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:37,288:0.89:325
chr11	47380340	rs3740688	G	T	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	47380688	rs35284836	GGAA	G	73.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr11	47380689	.	GA	G	351.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.939;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr11	47380692	.	GAA	G	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=0.450;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr11	47380694	.	A	G	209	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5010;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=4;NR=10;PP=209;QD=17.4122294677;SC=TGGAGGAAGAAGACCAGGGAA;SbPval=0.61;Source=Platypus;TC=17;TCF=5;TCR=12;TR=14;WE=47380702;WS=47380678;set=Platypus	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	47431728	rs2010519	A	G	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr11	47431961	rs61000762	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:169,71:0.30:240
chr11	47432034	rs755554	G	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	47436531	rs11039228	G	T	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	47440758	rs2293579	G	A	6689.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:168,298:0.64:466
chr11	47447346	rs10838709	C	T	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr11	47447955	rs7948705	C	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	47460098	rs10769267	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr11	47460306	rs7126210	A	G	5513.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:167,257:0.61:424
chr11	47462837	rs10716680	AG	A	2966.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	47469439	rs7111873	A	G	7247.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:241,355:0.60:596
chr11	47498660	rs12289442	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr11	47587577	rs58926533	TC	T	3711.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	47594542	rs61978569	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:66,125:0.65:191
chr11	47609867	rs4486587	G	A	13102.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr11	47611316	rs10769279	C	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	47644270	.	A	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.393;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-3.971;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:167,13:0.07:180
chr11	47644271	.	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.944;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-3.726;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:170,13:0.07:183
chr11	47644274	.	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.841;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-4.105;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:172,16:0.09:188
chr11	47644277	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-3.961;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:175,18:0.09:193
chr11	47648562	rs78695990	C	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr11	47684450	rs6485766	C	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47688459	rs7939069	G	A	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-0.744;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:174,84:0.33:258
chr11	47701528	rs12286721	C	A	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	47727193	rs71228117	C	CAA	205.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.947;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	47727590	rs17791016	A	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	47732461	.	CAA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr11	47736023	rs4752791	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,13:0.22:58
chr11	47736314	rs4752863	C	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	47758152	rs59205786	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	47772401	rs11039366	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47774366	rs151189779	A	AAAAC	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr11	47776047	rs7928954	G	A	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	47786926	.	AAAAAGAAAAGAAAAG	A,AAAAAGAAAAGAAAAGAAAAG	2473.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.90;SOR=1.536;set=HC	GT:AD:AF:DP	1/2:0,52,10:0.84,0.16:62
chr11	47788808	rs146921625	A	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=-0.821;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr11	47801958	rs149674516	G	A	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.722;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:71,114:0.62:185
chr11	47810226	rs13377558	G	A	259.89	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr11	47813436	rs10742821	C	T	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	47825972	rs7124949	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	47834592	rs7110289	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	47837638	rs7130715	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr11	47843133	rs7122182	A	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr11	47857168	rs2305982	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,37:0.35:107
chr11	47861660	rs11039424	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr11	48118347	rs11382316	T	TA	2367.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,90:0.67:134
chr11	48142528	.	A	AT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.286;QD=5.84;ReadPosRankSum=0.532;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:32,32:0.50:64
chr11	48145166	rs2270993	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr11	48149352	rs2229703	G	A	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:86,180:0.68:266
chr11	48153019	rs12281563	A	G	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.000;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:48,73:0.60:121
chr11	48158494	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr11	48158849	rs113757845	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr11	48166642	rs34300475	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr11	48170870	rs4752908	T	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	48171793	rs10734565	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	48184983	rs2270990	G	T	6062.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:131,278:0.68:409
chr11	48186110	rs60806872	AT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.190;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.764;QD=4.54;ReadPosRankSum=-0.289;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr11	48188748	rs11039556	T	C	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:35,84:0.71:119
chr11	48238421	rs10769329	T	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	48238880	rs10838833	C	T	1009.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:179,68:0.28:247
chr11	48239071	rs12292056	C	A	3648.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:102,163:0.62:265
chr11	48266582	rs7120549	A	C	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	48266736	rs7120775	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:162,66:0.29:228
chr11	48267589	rs1503180	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.04;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	48285301	rs713325	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	48285424	rs713323	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr11	48285842	rs1503193	A	G	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr11	48285856	rs10838850	C	T	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:376,191:0.34:567
chr11	48285906	rs16905753	C	T	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:354,166:0.32:520
chr11	48285981	rs76884411	CCTT	C	7559.73	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:402,211:0.34:613
chr11	48286231	rs10838851	T	A	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-3.942;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:247,117:0.32:364
chr11	48328644	rs753095	C	T	6818.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:196,328:0.63:524
chr11	48328818	rs11039669	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr11	48346450	rs79776366	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=0.489;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	48346458	rs77295176	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=2.218;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr11	48346487	rs33950768	TC	T	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr11	48346513	rs78206553	T	C	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=10.275;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=2.905;QD=11.36;ReadPosRankSum=-0.172;SOR=1.637;set=HC	GT:AD:AF:DP	0/1:76,33:0.30:109
chr11	48346523	rs72911451	C	T	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.823;QD=11.32;ReadPosRankSum=-0.694;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:93,42:0.31:135
chr11	48346535	rs76964780	G	C	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.748;QD=11.20;ReadPosRankSum=-1.019;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:113,53:0.32:166
chr11	48346541	rs75498992	A	T	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.847;QD=10.82;ReadPosRankSum=-0.235;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:134,59:0.31:193
chr11	48346547	rs79042268	C	T	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.774;QD=11.00;ReadPosRankSum=-0.353;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:146,67:0.31:213
chr11	48346551	rs77470587	C	A	2373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.820;QD=10.46;ReadPosRankSum=0.289;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:157,70:0.31:227
chr11	48346579	rs72911452	C	A	4455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.428;QD=13.30;ReadPosRankSum=-0.119;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:214,121:0.36:335
chr11	48346588	rs75900655	A	C	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.290;QD=12.75;ReadPosRankSum=-0.408;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:239,148:0.38:387
chr11	48346604	rs75647397	T	G	4008.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:262,180:0.41:442
chr11	48346615	rs73463988	G	A	5440.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:278,198:0.42:476
chr11	48346660	rs138704181	TTTGCTGATC	T	6336.73	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:331,176:0.35:507
chr11	48346681	rs78490540	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:309,176:0.36:485
chr11	48346729	rs73463990	G	C	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:309,169:0.35:478
chr11	48346791	rs73463994	C	T	4487.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:375,238:0.39:613
chr11	48346822	rs73463997	A	C	10261.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:393,290:0.42:683
chr11	48346843	rs73463998	C	T	10346.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:380,288:0.43:668
chr11	48346916	rs77069283	G	C	10122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.527;QD=16.96;ReadPosRankSum=2.446;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:321,276:0.46:597
chr11	48346924	rs72911454	T	C	10406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.532;QD=17.85;ReadPosRankSum=1.702;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:315,268:0.46:583
chr11	48346932	rs80285195	G	A	9494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.592;QD=16.29;ReadPosRankSum=2.087;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:326,257:0.44:583
chr11	48346961	rs75493089	AA	TG	9438.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;JOINED;set=Intersection	GT:AD:AF:DP	0/1:367,252:0.41:619
chr11	48346999	rs72473367	T	G	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:408,260:0.39:668
chr11	48347014	rs72473368	G	A	9422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-1.777;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:396,259:0.40:655
chr11	48347023	rs67077733	C	T	9509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-2.102;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:377,262:0.41:639
chr11	48347067	rs73464001	C	T	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:323,254:0.44:577
chr11	48347100	rs73465905	C	T	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:303,233:0.43:536
chr11	48347124	rs79019124	A	G	7186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=1.750;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:293,196:0.40:489
chr11	48347130	rs77395846	C	G	7289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=0.682;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:280,199:0.42:479
chr11	48347140	rs10838874	T	C	12398.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:113,375:0.77:488
chr11	48347142	rs79891698	C	T	7162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.571;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:287,193:0.40:480
chr11	48347144	rs79124801	T	C	7177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.564;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:283,195:0.41:478
chr11	48347267	rs73465910	T	C	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:317,251:0.44:568
chr11	48347306	rs73465911	G	T	4325.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:282,222:0.44:504
chr11	48347342	rs76958755	G	A	5771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-2.334;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:245,161:0.40:406
chr11	48347346	rs74590631	A	T	5771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-2.311;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:242,151:0.38:393
chr11	48347358	rs76274696	C	T	4888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-3.583;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:221,136:0.38:357
chr11	48347363	rs77814753	C	T	4840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-3.782;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:220,136:0.38:356
chr11	48347392	rs79127479	T	C	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:179,114:0.39:293
chr11	48347419	rs73465913	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:157,106:0.40:263
chr11	48347492	rs79775762	G	A	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=1.691;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:70,78:0.53:148
chr11	48347498	rs78309417	A	T	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=0.439;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:61,74:0.55:135
chr11	48347539	rs79172951	G	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr11	48347563	.	CT	C	94	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=7;HapScore=2;MGOF=37;MMLQ=27;MQ=54.1;NF=0;NR=4;PP=94;QD=28.75;SC=CCAAGCCTTACTTTTTTTGTA;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=4;WE=48347571;WS=48347553;set=Platypus	GT:AD:AF:DP	1/0:8,4:0.33:12
chr11	48347583	.	G	A	98	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=56;MMLQ=27;MQ=53.45;NF=2;NR=4;PP=98;QD=22.1285354245;SC=ATCATGTATAGTTGTATTCCA;SbPval=0.65;Source=Platypus;TC=12;TCF=4;TCR=8;TR=6;WE=48347591;WS=48347573;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr11	48349128	rs76530627	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.90;ReadPosRankSum=0.271;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr11	48349130	rs75661263	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.73;ReadPosRankSum=0.271;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr11	48349152	rs73465924	A	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.247;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	48349171	rs73465926	T	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.182;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr11	48349209	rs73465927	A	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.334;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:62,35:0.36:97
chr11	48349230	rs74884553	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.466;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:77,56:0.42:133
chr11	48349252	rs76041098	G	A	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.585;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:97,77:0.44:174
chr11	48349312	rs79572913	A	G	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.902;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:79,64:0.45:143
chr11	48349316	rs76607933	T	A	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=16.87;ReadPosRankSum=0.542;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:79,64:0.45:143
chr11	48349320	rs77184441	A	T	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=18.39;ReadPosRankSum=0.084;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:70,56:0.44:126
chr11	48349329	rs76765071	C	A	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.435;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:64,48:0.43:112
chr11	48349377	rs72911466	A	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr11	48349389	rs79223613	A	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.726;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr11	48349391	rs76599777	TG	CA	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.560;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.613;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr11	48349394	rs78755709	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.988;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr11	48349407	rs72911467	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr11	48349425	rs79941850	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr11	48366895	rs72473369	A	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr11	48366958	rs76319939	T	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:172,91:0.35:263
chr11	48366971	rs75689989	GG	CA	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;JOINED;set=Intersection	GT:AD:AF:DP	0/1:196,122:0.38:318
chr11	48367050	rs113897236	T	TAG	5906.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.367;QD=12.31;ReadPosRankSum=0.434;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:312,168:0.35:480
chr11	48367073	rs7941588	A	C	14078.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:138,462:0.77:600
chr11	48367097	rs73453179	A	G	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:445,214:0.32:659
chr11	48367133	rs79453749	C	A	7056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.002;QD=10.41;ReadPosRankSum=-1.923;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:475,203:0.30:678
chr11	48367136	rs78927905	C	T	7137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.002;QD=10.50;ReadPosRankSum=-1.806;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:479,201:0.30:680
chr11	48367155	rs75315666	T	A	6267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.003;QD=10.00;ReadPosRankSum=-0.755;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:453,174:0.28:627
chr11	48367159	rs75667244	C	T	5905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.003;QD=9.70;ReadPosRankSum=-0.138;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:443,166:0.27:609
chr11	48367163	rs74650698	A	G	5689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.003;QD=9.47;ReadPosRankSum=-0.069;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:436,165:0.27:601
chr11	48367170	rs77876442	G	A	5632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.003;QD=9.63;ReadPosRankSum=-0.228;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:421,164:0.28:585
chr11	48367190	rs78661795	A	T	5521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.539;QD=10.42;ReadPosRankSum=0.151;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:372,158:0.30:530
chr11	48367195	rs79063955	C	T	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.545;QD=10.27;ReadPosRankSum=1.124;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:368,155:0.30:523
chr11	48367249	rs74815769	C	T	5925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.353;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:267,163:0.38:430
chr11	48367252	rs76287086	G	A	5915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.391;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:269,165:0.38:434
chr11	48367311	rs73453180	T	C	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.374;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:300,172:0.36:472
chr11	48367363	rs73453183	C	T	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:296,116:0.28:412
chr11	48367387	rs78788561	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:280,80:0.22:360
chr11	48367419	rs77576379	G	A	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-3.173;QD=5.65;ReadPosRankSum=-2.312;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:224,67:0.23:291
chr11	48367424	rs77976451	C	G	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.278;QD=5.60;ReadPosRankSum=-2.085;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:214,60:0.22:274
chr11	48367469	rs79686513	TG	CA	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.711;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.259;QD=3.04;ReadPosRankSum=-2.556;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:138,23:0.14:161
chr11	48367474	rs75116918	A	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-4.327;QD=3.45;ReadPosRankSum=-2.375;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:130,21:0.14:151
chr11	48373632	rs4882248	T	A	286.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-0.764;QD=19.08;ReadPosRankSum=-1.199;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr11	48373748	rs73453188	C	G	3117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=17.857;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=16.76;ReadPosRankSum=0.596;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:102,84:0.45:186
chr11	48373770	rs73453191	T	A	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:152,106:0.41:258
chr11	48373797	rs72896825	C	T	4509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=13.26;ReadPosRankSum=1.841;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:215,125:0.37:340
chr11	48373805	rs75618010	G	A	4650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=13.36;ReadPosRankSum=2.369;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:224,124:0.36:348
chr11	48373815	rs74350365	A	G	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.815;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:241,135:0.36:376
chr11	48373817	rs75951679	C	T	5091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=1.766;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:242,135:0.36:377
chr11	48373827	rs80081241	G	A	5286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.750;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:251,144:0.36:395
chr11	48373833	rs75965588	GA	AG	5392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=1.034;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:262,145:0.36:407
chr11	48373885	rs76292854	A	G	4506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.803;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.428;QD=9.93;ReadPosRankSum=1.837;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:304,150:0.33:454
chr11	48373900	rs77877396	A	G	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:272,155:0.36:427
chr11	48373936	rs76304554	A	G	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:199,116:0.37:315
chr11	48373976	rs80225178	T	G	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.414;QD=11.07;ReadPosRankSum=0.726;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:122,62:0.34:184
chr11	48373986	rs12420054	A	G	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.407;QD=12.31;ReadPosRankSum=0.563;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:101,52:0.34:153
chr11	48374000	rs112772888	C	CT	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr11	48374031	rs72896827	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.337;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr11	48374041	rs72896828	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-1.146;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr11	48386956	.	C	CA	246.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr11	48386988	rs10838880	T	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.713;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr11	48387098	rs77594589	A	C	5428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.294;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:194,148:0.43:342
chr11	48387107	rs77606603	T	C	5399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=2.360;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:203,143:0.41:346
chr11	48387115	rs75003399	G	A	5466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=1.923;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:206,146:0.41:352
chr11	48387118	rs79339252	G	A	5382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=2.559;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:209,141:0.40:350
chr11	48387154	rs72473370	A	G	3815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=0.471;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:207,112:0.35:319
chr11	48387164	rs72473371	G	A	3567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.038;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:201,101:0.33:302
chr11	48387201	rs77053100	G	A	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=11.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-1.563;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:191,47:0.20:238
chr11	48387206	rs76817095	T	C	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.300;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=9.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-2.438;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:187,47:0.20:234
chr11	48387210	rs78428763	CC	TG	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=9.865;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-2.570;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:193,46:0.19:239
chr11	48387237	rs72898877	C	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=5.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.123;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:211,21:0.09:232
chr11	48387254	rs75441735	A	G	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-2.074;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:213,28:0.12:241
chr11	48387258	rs78030134	C	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.703;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-2.566;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:209,29:0.12:238
chr11	48387262	rs75430864	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.759;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-2.807;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:218,32:0.13:250
chr11	48387275	rs10838881	T	C	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.434;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:184,71:0.28:255
chr11	48387278	rs139139147	C	CACTGTCCTTCTGT	965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.823;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-1.636;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:219,31:0.12:250
chr11	48387284	.	G	GAGTCTTTAGTA	1225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.026;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.583;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:226,36:0.14:262
chr11	48387301	rs76220342	G	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-4.212;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:230,88:0.28:318
chr11	48387335	rs73460769	C	A	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:266,153:0.37:419
chr11	48387370	rs73460772	A	G	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:290,187:0.39:477
chr11	48387424	rs61917478	G	T	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:329,203:0.38:532
chr11	48387490	rs77144540	G	A	6076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.555;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:473,193:0.29:666
chr11	48387506	rs72898882	A	G	5389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=1.185;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:493,177:0.26:670
chr11	48387526	rs78378263	G	T	5499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.408;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:475,160:0.25:635
chr11	48387535	rs72898883	T	C	5362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.026;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:481,161:0.25:642
chr11	48387540	rs72898885	G	T	5436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-1.275;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:462,162:0.26:624
chr11	48387580	rs78299098	G	T	5097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.353;QD=8.94;ReadPosRankSum=-1.176;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:420,150:0.26:570
chr11	48387582	rs75027745	C	T	5063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.335;QD=8.84;ReadPosRankSum=-1.179;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:421,152:0.27:573
chr11	48387584	rs75821991	A	T	5410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.846;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.343;QD=9.41;ReadPosRankSum=-0.911;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:423,152:0.26:575
chr11	48387591	rs75297075	A	G	5528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.305;QD=9.23;ReadPosRankSum=-0.486;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:438,161:0.27:599
chr11	48387604	rs72898886	C	T	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:463,170:0.27:633
chr11	48387630	rs73460777	C	T	5577.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:422,171:0.29:593
chr11	48387647	rs75615667	A	G	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:377,169:0.31:546
chr11	48387668	rs10769651	C	G	6331.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:326,174:0.35:500
chr11	48387679	rs76209049	A	G	6285.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:310,168:0.35:478
chr11	48387683	rs67755516	GT	G	6486.73	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:311,170:0.35:481
chr11	48387689	rs75371569	T	C	6203.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:298,170:0.36:468
chr11	48387705	rs34926479	C	T	5507.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:270,173:0.39:443
chr11	48387737	rs73460780	G	C	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:242,189:0.44:431
chr11	48387757	rs74557904	A	C	4424.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:234,215:0.48:449
chr11	48387780	rs76329018	C	T	8487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=1.471;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:260,227:0.47:487
chr11	48387789	rs80222485	C	G	8605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=-0.190;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:261,233:0.47:494
chr11	48387825	rs75650204	T	G	9337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-1.509;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:318,252:0.44:570
chr11	48387833	rs79515387	T	C	9582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-1.181;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:327,246:0.43:573
chr11	48387850	rs73460781	G	T	7018.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:357,238:0.40:595
chr11	48387890	rs74623688	T	C	7451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.21;ReadPosRankSum=1.253;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:361,203:0.36:564
chr11	48387894	rs75065468	C	T	7579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.151;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:348,204:0.37:552
chr11	48387900	rs74338058	G	A	7328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.056;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:341,197:0.37:538
chr11	48387917	rs66829866	AT	A	6233.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:316,168:0.35:484
chr11	48387919	rs114441034	G	A	6284.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:313,164:0.34:477
chr11	48387930	rs75939575	T	C	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:294,149:0.34:443
chr11	48387945	rs139770813	C	CCA	4942.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:232,126:0.35:358
chr11	48387946	rs114053360	G	T	4909.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:236,125:0.35:361
chr11	48387960	rs79688019	T	C	4017.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:199,111:0.36:310
chr11	48387978	rs78160589	T	A	3479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.659;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:159,94:0.37:253
chr11	48387983	rs75819836	T	C	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=5.836;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.232;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:149,85:0.36:234
chr11	48388047	rs75982328	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.119;QD=15.76;ReadPosRankSum=-0.956;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr11	48388047	.	TTA	CTG	397	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=1;MGOF=73;MMLQ=27;MQ=59.94;NF=1;NR=10;PP=397;QD=40.9516249875;SC=TTGGTCAGGATTATTTTCTGT;SbPval=0.71;Source=Platypus;TC=37;TCF=4;TCR=33;TR=11;WE=48388057;WS=48388037;set=Platypus	GT:AD:AF:DP	1/0:26,11:0.30:37
chr11	48388049	rs77697332	A	G	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.100;QD=16.05;ReadPosRankSum=-2.071;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr11	48388067	rs73460782	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr11	48388487	rs78414756	C	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	48388524	rs76789954	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-0.615;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	48388524	.	CAA	TAG	366	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=78;MMLQ=27;MQ=60.0;NF=12;NR=1;PP=366;QD=32.2667596048;SC=ATTTCAGAATCAACTGAACTG;SbPval=0.97;Source=Platypus;TC=31;TCF=23;TCR=8;TR=13;WE=48388534;WS=48388514;set=Platypus	GT:AD:AF:DP	0/1:18,13:0.42:31
chr11	48388526	rs77473022	A	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.604;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr11	48388542	rs77282201	G	A	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=-0.172;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr11	48388544	rs74346885	T	C	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.28;ReadPosRankSum=-0.860;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr11	48388553	rs80082776	C	G	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=-0.154;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr11	48388563	rs77148147	CT	AG	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.729;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=1.739;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:71,46:0.39:117
chr11	48388567	rs79767657	A	C	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=1.734;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:79,50:0.39:129
chr11	48388571	rs79079495	C	T	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.923;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:84,57:0.40:141
chr11	48388583	rs77992774	A	T	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:112,74:0.40:186
chr11	48388610	rs79108820	T	G	3415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=11.86;ReadPosRankSum=3.773;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:194,94:0.33:288
chr11	48388612	rs76366705	T	C	3610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=12.45;ReadPosRankSum=3.351;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:194,96:0.33:290
chr11	48388614	rs146852809	T	C	3598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=12.00;ReadPosRankSum=2.725;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:199,101:0.34:300
chr11	48388621	rs75849499	ACA	GTC	3988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.849;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.987;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=12.27;ReadPosRankSum=2.802;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:220,105:0.32:325
chr11	48388641	rs80267937	G	A	5609.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:279,152:0.35:431
chr11	48388657	rs80000751	G	A	6884.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:305,180:0.37:485
chr11	48388681	rs76712816	G	A	7730.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:313,206:0.40:519
chr11	48388698	rs77483743	C	T	7512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.004;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:307,200:0.39:507
chr11	48388717	rs78132200	T	C	6745.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:251,179:0.42:430
chr11	48388782	rs76039310	A	G	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr11	48388833	rs73460789	A	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr11	48997592	rs1813231	C	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	48998688	rs7113308	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:189,115:0.38:304
chr11	49000423	rs1965370	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	49000522	rs1963629	C	T	8779.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr11	49000673	rs11040199	A	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr11	49002343	rs9783302	T	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	49056627	rs60632912	C	CT	1189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.082;QD=7.48;ReadPosRankSum=-0.683;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:65,94:0.59:159
chr11	49059362	rs2696914	C	A	9325.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	49075605	rs2851535	G	A	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	49076898	rs7932199	T	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=26.30;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	49076963	rs34650085	C	CAA	4834.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:4,180:0.98:184
chr11	49077889	rs36015501	AT	A	3132.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=22.38;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	49079350	rs1819409	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	49080565	rs7932738	A	C	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	49080610	.	C	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-2.374;QD=3.35;ReadPosRankSum=0.501;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:177,58:0.25:235
chr11	49145048	rs6485962	T	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	49145838	rs7933115	C	T	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	49168300	rs595139	G	A	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	49168612	rs598841	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	49170334	rs202694	T	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	49176945	rs202689	A	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	49192690	rs202719	T	C	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	49192905	rs34828796	GA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-1.684;QD=1.66;ReadPosRankSum=-2.079;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	49194894	rs175849	G	A	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	49195090	rs202718	T	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.13;QD=24.49;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	49195127	.	CAG	C	76.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=6.472;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=0.968;QD=1.45;ReadPosRankSum=-0.606;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr11	49195128	rs67031327	AG	A	231.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-1.603;QD=4.37;ReadPosRankSum=0.679;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr11	49195129	rs67031328	G	A	96.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.587;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=0.886;QD=1.83;ReadPosRankSum=-0.396;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr11	49196490	rs202716	T	C	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	49196652	rs202715	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	49207315	rs182169	A	G	1617.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;MQRankSum=-1.469;QD=25.68;ReadPosRankSum=-1.218;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr11	49214499	rs4315497	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	49221885	rs202680	T	A	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	49227488	rs202677	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	49227620	rs202676	A	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	49229500	rs111891603	C	CAAACAAAACA	3096.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.88;QD=43.01;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	49312058	rs10769571	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	49329552	rs1164670	G	A	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	49356400	rs34397343	GT	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=-0.712;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	49437005	rs11040359	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	49454956	rs59892235	CT	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=0.114;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr11	49597799	rs7131345	C	T	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	49598209	rs7939515	T	C	10345.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr11	49637416	rs7125677	A	G	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	49729155	rs7934809	G	A	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	49813442	rs7943083	A	G	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	49813497	.	CTTTT	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=7.549;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=0.791;QD=6.20;ReadPosRankSum=1.602;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	49813542	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	49813637	rs11530434	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	49974371	rs28662375	G	A	14646.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr11	55432646	rs149371777	G	A	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr11	55541098	rs297118	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	55563776	rs297054	T	G	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	55563900	rs297055	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	55587117	rs297082	T	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	55587511	rs297081	A	G	9079.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	55595081	rs7102394	C	T	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,324:0.99:326
chr11	55595324	rs7102663	C	T	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	55606302	rs6591699	G	T	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	55606693	rs6591700	G	A	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	55656437	.	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.44;ReadPosRankSum=1.867;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr11	55656483	rs7483200	T	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	55681336	rs11231529	G	A	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	55681494	rs2457239	G	A	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	55682111	rs2940752	T	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	55703981	rs35841857	T	TA	249.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.70;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	55734972	rs11231705	A	T	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	55746891	rs7481466	G	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	55761221	rs2449134	C	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	55761738	rs2128152	T	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	55762167	rs34270187	CA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.524;QD=6.10;ReadPosRankSum=0.226;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr11	55798152	rs1482011	G	A	7986.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr11	55860780	rs1842700	G	A	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=24.99;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	55872876	rs2512961	C	T	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=25.37;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	55873024	rs2449148	A	G	16040.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=26.34;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr11	55873368	rs1842696	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	55889790	rs2035408	G	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	55890257	rs1842691	C	T	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	56000656	rs187416130	C	T	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr11	56127746	rs7942390	A	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	56128081	rs10896290	A	G	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	56128524	rs7928704	C	T	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	56143125	rs74467122	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-4.063;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:197,34:0.15:231
chr11	56143156	rs11228165	C	T	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.972;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:220,62:0.22:282
chr11	56143158	rs11228166	A	G	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-1.140;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:223,66:0.23:289
chr11	56143198	rs80034856	C	T	3722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-1.158;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:210,104:0.33:314
chr11	56143204	rs79445223	C	T	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-1.026;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:210,110:0.34:320
chr11	56143207	rs75547926	C	T	4366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-1.263;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:205,113:0.36:318
chr11	56143216	rs76044076	G	A	4665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-0.415;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:221,128:0.37:349
chr11	56143225	rs77854836	CT	TC	4810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.396;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=1.329;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:227,130:0.36:357
chr11	56143250	rs76390346	G	A	4773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=4.948;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:232,131:0.36:363
chr11	56143252	rs75101573	G	A	4839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=4.850;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:229,131:0.36:360
chr11	56143255	.	T	TGA	5122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=3.938;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:226,139:0.38:365
chr11	56143257	rs77515824	C	A	5146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=3.611;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:227,137:0.38:364
chr11	56143259	.	AGT	A	5092.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=4.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=3.120;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:227,139:0.38:366
chr11	56143357	rs76949582	G	A	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.726;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:129,83:0.39:212
chr11	56143360	rs79469149	C	T	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.444;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:129,77:0.37:206
chr11	56143370	rs77605888	G	A	2690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.964;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.312;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:135,59:0.30:194
chr11	56143371	rs74603381	T	G	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.141;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.238;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:135,59:0.30:194
chr11	56143375	rs75240955	A	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.899;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.684;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:137,56:0.29:193
chr11	56143378	rs80298942	C	G	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.450;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.778;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:139,56:0.29:195
chr11	56143381	rs78405432	T	C	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.055;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.149;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:142,59:0.29:201
chr11	56143382	rs77605314	G	A	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.826;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.641;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:150,59:0.28:209
chr11	56143394	rs74667177	A	G	1943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.335;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=1.650;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:168,59:0.26:227
chr11	56143399	rs75482598	A	G	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.467;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=5.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.958;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:172,59:0.26:231
chr11	56143400	rs80237042	C	T	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.828;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=7.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.327;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:176,59:0.25:235
chr11	56143402	rs77968220	G	A	2072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.101;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=6.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.061;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:177,59:0.25:236
chr11	56143408	rs79327545	C	T	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.974;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=11.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.235;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:180,63:0.26:243
chr11	56143411	rs77484944	T	C	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.942;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=14.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.065;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:183,63:0.26:246
chr11	56143414	rs74329097	C	G	2056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.536;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=14.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-0.713;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:182,62:0.25:244
chr11	56143415	rs77097210	A	G	2047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.025;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=14.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-1.118;SOR=1.512;set=HC	GT:AD:AF:DP	0/1:181,62:0.26:243
chr11	56143424	.	A	ACGGC	2371.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.435;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=15.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-1.910;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:199,67:0.25:266
chr11	56143425	.	TATCA	T	2320.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.476;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=19.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.473;SOR=1.664;set=HC	GT:AD:AF:DP	0/1:217,71:0.25:288
chr11	56143432	rs78396581	A	G	2340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.366;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=20.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-2.265;SOR=1.701;set=HC	GT:AD:AF:DP	0/1:221,73:0.25:294
chr11	56143434	rs10791961	C	G	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	56143489	rs74711788	AT	GA	4714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.331;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=2.005;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-1.239;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:344,133:0.28:477
chr11	56143501	rs12272237	T	G	5256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.957;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.283;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:383,151:0.28:534
chr11	56143508	rs10791962	A	T	5245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.390;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.185;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:402,148:0.27:550
chr11	56143510	rs10791963	T	C	5176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.133;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.384;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:417,152:0.27:569
chr11	56143528	rs10791964	A	G	5754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.545;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.76;ReadPosRankSum=1.506;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:484,173:0.26:657
chr11	56143534	rs78854227	A	G	6267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.130;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=4.783;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.234;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:501,182:0.27:683
chr11	56143537	rs74691432	A	T	6410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.581;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=4.840;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.90;ReadPosRankSum=2.075;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:534,186:0.26:720
chr11	56143539	rs75226392	T	C	6602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.315;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=6.010;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.04;ReadPosRankSum=2.165;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:542,188:0.26:730
chr11	56143543	rs76579014	TT	CC	6662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.920;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=8.490;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.09;ReadPosRankSum=1.771;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:540,193:0.26:733
chr11	56143556	rs80334520	T	A	7640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.513;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=15.851;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.401;SOR=1.693;set=HC	GT:AD:AF:DP	0/1:564,223:0.28:787
chr11	56143559	rs74603674	C	T	7886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.123;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=15.929;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.333;SOR=1.736;set=HC	GT:AD:AF:DP	0/1:565,221:0.28:786
chr11	56143561	rs75242425	AA	GG	7970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.200;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=17.973;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.560;SOR=1.778;set=HC	GT:AD:AF:DP	0/1:575,226:0.28:801
chr11	56143564	rs77640279	G	T	9587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.057;ClippingRankSum=0.000;DB;DP=815;ExcessHet=3.0103;FS=17.599;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.983;SOR=1.816;set=HC	GT:AD:AF:DP	0/1:575,233:0.29:808
chr11	56143570	rs11228169	A	G	9768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.837;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-6.766;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:589,317:0.35:906
chr11	56143690	rs4990123	C	A	7069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.179;QD=15.34;ReadPosRankSum=-1.773;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:269,192:0.42:461
chr11	56143696	rs4990122	C	T	7009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=5.195;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.191;QD=15.68;ReadPosRankSum=-2.340;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:263,184:0.41:447
chr11	56143699	rs4990121	T	G	6713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=5.168;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.204;QD=15.51;ReadPosRankSum=-2.484;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:257,176:0.41:433
chr11	56143716	rs10896309	TG	CA	4617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.498;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=18.131;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.411;QD=13.01;ReadPosRankSum=0.831;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:237,118:0.33:355
chr11	56143723	rs12272349	T	C	3856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.621;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=22.559;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.457;QD=11.58;ReadPosRankSum=1.167;SOR=1.605;set=HC	GT:AD:AF:DP	0/1:227,106:0.32:333
chr11	56143725	rs77042014	C	G	3739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=24.342;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.451;QD=11.40;ReadPosRankSum=0.840;SOR=1.652;set=HC	GT:AD:AF:DP	0/1:223,105:0.32:328
chr11	56143729	rs55888197	CC	TG	3622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.946;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=23.473;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.459;QD=11.39;ReadPosRankSum=0.503;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:217,101:0.32:318
chr11	56143762	rs79307272	C	T	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=13.263;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.781;QD=9.06;ReadPosRankSum=-0.486;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:159,62:0.28:221
chr11	56143767	rs79705206	C	T	2052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=13.991;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.873;QD=9.64;ReadPosRankSum=-0.701;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:156,57:0.27:213
chr11	56143782	.	T	TGA	1502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=8.652;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-4.168;QD=7.09;ReadPosRankSum=-0.736;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:164,48:0.23:212
chr11	56143784	.	CAT	C	1463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.163;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=20.656;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-4.591;QD=6.94;ReadPosRankSum=0.686;SOR=2.042;set=HC	GT:AD:AF:DP	0/1:170,41:0.19:211
chr11	56143795	.	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.215;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=15.058;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.583;QD=5.47;ReadPosRankSum=-0.475;SOR=1.778;set=HC	GT:AD:AF:DP	0/1:161,39:0.20:200
chr11	56143803	rs202193035	AG	GC	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.944;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=16.232;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.910;QD=4.60;ReadPosRankSum=-0.443;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:161,34:0.17:195
chr11	56143807	rs201727202	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.139;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=19.198;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.000;QD=4.86;ReadPosRankSum=-0.667;SOR=2.148;set=HC	GT:AD:AF:DP	0/1:162,33:0.17:195
chr11	56143810	rs201982103	T	C	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.252;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=16.866;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.923;QD=4.77;ReadPosRankSum=-1.395;SOR=1.978;set=HC	GT:AD:AF:DP	0/1:157,33:0.17:190
chr11	56143816	rs111512467	G	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.249;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=11.721;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.236;QD=4.49;ReadPosRankSum=-0.871;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:156,29:0.16:185
chr11	56143819	rs113312059	G	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.910;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=11.205;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.048;QD=4.27;ReadPosRankSum=-1.906;SOR=1.595;set=HC	GT:AD:AF:DP	0/1:155,31:0.17:186
chr11	56143823	rs77614949	G	A	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=6.357;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.164;QD=4.24;ReadPosRankSum=-2.038;SOR=1.323;set=HC	GT:AD:AF:DP	0/1:157,30:0.16:187
chr11	56143858	rs78068762	G	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-5.817;QD=1.53;ReadPosRankSum=-0.024;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:167,20:0.11:187
chr11	56143864	rs111260371	C	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-5.835;QD=1.58;ReadPosRankSum=-0.448;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:168,20:0.11:188
chr11	56143867	rs111341120	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.296;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-4.306;QD=1.17;ReadPosRankSum=0.023;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:167,18:0.10:185
chr11	56143882	rs113061820	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.334;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:157,15:0.09:172
chr11	56143885	rs111871244	T	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.180;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.806;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:155,15:0.09:170
chr11	56143891	rs112265664	T	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-1.702;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:151,15:0.09:166
chr11	56143898	rs373392784	G	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=4.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-1.621;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:144,13:0.08:157
chr11	56143900	rs202086525	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-1.902;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:143,13:0.08:156
chr11	56143903	.	G	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.971;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:143,13:0.08:156
chr11	56143966	rs12291978	C	T	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	56143977	rs12272403	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	56185159	rs7930678	A	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	56185327	rs7933772	T	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	56185345	rs6591324	A	G	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	56185689	rs7931261	A	G	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	56380008	rs12292069	C	T	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=3.600;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:99,102:0.51:201
chr11	56380929	rs115296663	A	T	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:214,152:0.42:366
chr11	56409603	rs11606499	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr11	56431245	rs146998954	C	T	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:105,113:0.52:218
chr11	56467757	.	CACG	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.86;ReadPosRankSum=-2.200;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	56467763	.	A	AGAT	250.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.86;ReadPosRankSum=-2.200;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	56467764	rs78916686	C	T	259.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.025;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.86;ReadPosRankSum=-2.200;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	56467787	rs74218731	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	56467810	rs76085479	A	T	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=1.095;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr11	56467813	rs77180330	A	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.42;ReadPosRankSum=1.535;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	56467816	rs78119960	G	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.38;ReadPosRankSum=1.914;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr11	56467819	rs78036340	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=2.689;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr11	56467833	rs73474897	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr11	56467881	rs73474900	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr11	56467926	rs1704284	A	G	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:146,112:0.43:258
chr11	56468020	rs532637	T	C	5256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.342;QD=22.27;ReadPosRankSum=0.406;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:65,171:0.72:236
chr11	56468021	rs532635	G	A	2517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-6.373;QD=10.71;ReadPosRankSum=1.240;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:152,83:0.35:235
chr11	56468044	rs3975155	T	G	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-6.887;QD=12.34;ReadPosRankSum=-0.221;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:115,59:0.34:174
chr11	56468047	rs2865519	A	G	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-6.948;QD=12.68;ReadPosRankSum=-0.446;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:108,55:0.34:163
chr11	56468048	rs2865520	C	T	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	56468111	rs602224	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr11	56468155	rs11228732	T	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.365;QD=4.15;ReadPosRankSum=-0.019;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:165,60:0.27:225
chr11	56468198	rs4990194	A	G	5707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.136;QD=17.95;ReadPosRankSum=1.730;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:171,147:0.46:318
chr11	56468200	rs4990195	C	T	5863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.129;QD=18.27;ReadPosRankSum=1.536;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:172,149:0.46:321
chr11	56468202	rs4990196	G	A	6018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.147;QD=18.69;ReadPosRankSum=1.891;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:174,148:0.46:322
chr11	56468212	rs591369	G	A	6267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.070;QD=17.46;ReadPosRankSum=0.776;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:187,172:0.48:359
chr11	56468259	rs503776	C	T	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:202,192:0.49:394
chr11	56468368	rs11228733	C	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:201,145:0.42:346
chr11	56468403	rs11228734	G	A	4511.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:174,130:0.43:304
chr11	56468416	rs11228735	G	A	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:148,122:0.45:270
chr11	56468448	rs80194264	AA	GT	4835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.950;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=2.393;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:136,126:0.48:262
chr11	56468452	rs79970235	A	C	4933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.333;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=1.738;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:134,130:0.49:264
chr11	56468493	rs10792053	A	G	5488.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:87,248:0.74:335
chr11	56468554	rs12420076	A	C	11318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.11;ReadPosRankSum=0.669;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:232,280:0.55:512
chr11	56468560	rs10896516	TA	CG	11988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=1.092;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:250,302:0.55:552
chr11	56468637	rs76884192	C	T	12426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=-0.057;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:335,336:0.50:671
chr11	56468638	rs7121276	G	T	3282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.893;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:464,205:0.31:669
chr11	56468646	rs78493274	C	T	12085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=-0.421;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:332,311:0.48:643
chr11	56468694	rs79060400	C	T	8179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.102;QD=16.49;ReadPosRankSum=0.814;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:273,223:0.45:496
chr11	56468699	rs79251113	T	A	8042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.119;QD=17.26;ReadPosRankSum=1.978;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:260,206:0.44:466
chr11	56468704	rs79288825	T	C	7603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.118;QD=16.82;ReadPosRankSum=2.334;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:252,200:0.44:452
chr11	56468720	rs66943455	T	C	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:219,182:0.45:401
chr11	56468817	rs74605930	G	T	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=7.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.556;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr11	56468819	rs78460796	C	T	1478.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.311;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=8.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.070;SOR=1.511;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chr11	56468820	rs77083631	C	T	1401.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=8.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.076;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:81,39:0.33:120
chr11	56468828	rs530142	G	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.008;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:64,29:0.31:93
chr11	56468832	rs79579174	G	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.556;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:57,27:0.32:84
chr11	56468835	rs588308	G	T	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.103;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr11	56468870	.	G	A	223.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.019;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr11	56468871	.	T	C	223.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.000;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr11	56468872	.	G	A	223.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.076;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr11	56468877	.	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-0.915;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr11	56468881	.	C	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.249;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	56468883	.	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-2.063;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	56468893	rs79757227	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.864;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr11	56468897	.	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.388;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,2:0.14:14
chr11	56508525	rs556056	A	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	56508619	rs545772	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	56508727	rs59062115	GA	G	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	56510243	rs11228762	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-1.242;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	56510623	rs513873	A	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:122,102:0.46:224
chr11	56510672	rs577576	T	C	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	56510694	rs1397053	T	C	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:171,128:0.43:299
chr11	56570035	rs58456747	G	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:140,129:0.48:269
chr11	56570067	rs7121576	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:113,121:0.52:234
chr11	56756664	rs2853083	G	A	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	56949529	rs80306837	C	T	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:158,178:0.53:336
chr11	56950175	rs57148791	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr11	56955023	rs3018191	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr11	57004344	rs948847	G	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:93,103:0.53:196
chr11	57077464	rs10896602	T	C	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:259,250:0.49:509
chr11	57081197	rs4939134	G	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr11	57087739	rs142187077	C	T	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:194,190:0.49:384
chr11	57094842	.	TA	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.906;QD=0.90;ReadPosRankSum=0.729;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr11	57115743	rs1815768	G	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.941;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:59,50:0.46:109
chr11	57117385	rs2276042	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr11	57118467	rs3741090	A	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr11	57135663	rs55655702	A	AG	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	57137296	rs2276040	G	A	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:80,95:0.54:175
chr11	57137371	rs2276039	G	A	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:240,210:0.47:450
chr11	57137424	rs2276038	C	T	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:289,221:0.43:510
chr11	57137538	rs67821929	A	AG	2271.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	57144152	rs1867126	G	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	57147016	rs540687	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	57147353	rs544079	G	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	57148053	rs571651	G	T	112.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	57148175	rs669661	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	57155001	rs536455	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr11	57155288	rs630396	T	C	4654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-0.952;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,182:0.99:183
chr11	57157405	rs490358	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:94,75:0.44:169
chr11	57184218	rs4938865	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	57185404	rs6591424	T	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr11	57191676	rs58064405	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	57193150	rs181831403	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr11	57235413	rs11229040	G	A	11508.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr11	57243577	rs114279729	G	C	6210.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:357,314:0.47:671
chr11	57243588	rs2258835	A	G	25544.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	1/1:0,759:1.00:759
chr11	57254807	rs77104814	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	57256732	rs34746107	G	A	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:95,129:0.58:224
chr11	57258617	rs2729384	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	57259178	rs80180256	C	T	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:162,162:0.50:324
chr11	57265241	rs114467256	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=0.049;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr11	57265400	rs2581922	C	T	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	57268170	rs2250673	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	57281387	rs149945170	T	A	2141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.381;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:115,111:0.49:226
chr11	57310327	rs75192176	A	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,90:0.42:213
chr11	57334428	.	C	CG	716.75	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr11	57334508	rs4939152	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.877;QD=8.38;ReadPosRankSum=1.856;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:78,62:0.44:140
chr11	57346723	rs112429940	GCACCCTA	G	720.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr11	57365895	rs28362945	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.313;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr11	57367222	rs1005510	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr11	57379170	rs2511988	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr11	57413720	rs890036	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr11	57424389	rs55969690	GA	G	106.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.140;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.80;ReadPosRankSum=0.282;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr11	57460224	rs12801694	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr11	57461225	rs141993890	GTC	G	95.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr11	57466978	rs2969940	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr11	57467527	.	A	G	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.313;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr11	57505520	.	CT	C	883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.375;QD=6.18;ReadPosRankSum=-1.809;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:69,74:0.52:143
chr11	57509233	rs145767870	C	CG	1462.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr11	57509429	rs635663	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	57518392	rs56392705	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	57563831	.	C	G	212.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr11	57563991	rs10896644	C	T	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:192,137:0.42:329
chr11	57571232	rs11229137	C	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr11	57571336	.	T	TA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.597;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr11	57582908	rs11570222	G	A	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.706;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:94,68:0.42:162
chr11	57798723	rs921135	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:72,82:0.53:154
chr11	57798942	rs2513726	A	G	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:175,185:0.51:360
chr11	57799108	rs34846253	AC	A	4182.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:108,129:0.54:237
chr11	57799371	rs1374570	G	C	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr11	57947909	rs17152468	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr11	57958497	rs34337292	T	C	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:201,157:0.44:358
chr11	57958796	rs73470064	C	T	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:189,197:0.51:386
chr11	57996312	rs4245219	C	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	58034543	rs10792156	C	T	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr11	58125620	rs4127353	T	C	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr11	58126305	rs4939208	A	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr11	58169996	rs12279895	T	C	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:114,89:0.44:203
chr11	58170025	rs12271646	C	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:103,81:0.44:184
chr11	58170106	rs12279957	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr11	58170143	rs11229409	C	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr11	58170291	rs11229410	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr11	58170342	rs11229411	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr11	58170374	rs12280114	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr11	58170469	rs11229412	C	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr11	58170738	rs11229413	A	G	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.096;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:71,70:0.50:141
chr11	58170927	rs12278966	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	58190112	rs10466659	A	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr11	58190136	rs4298923	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr11	58190747	rs1893902	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr11	58207203	rs11229457	C	T	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=1.482;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:79,74:0.48:153
chr11	58207203	.	CA	TG	649	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=19;MQ=60.0;NF=23;NR=27;PP=649;QD=14.0493574972;SC=TATGGCCAGGCAAGCACATAC;SbPval=0.55;Source=Platypus;TC=99;TCF=46;TCR=53;TR=50;WE=58207212;WS=58207193;set=Platypus	GT:AD:AF:DP	0/1:49,50:0.51:99
chr11	58207204	rs4938895	A	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.49;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	58295748	rs35632700	TCA	T	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr11	58318619	rs1047979	C	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:154,120:0.44:274
chr11	58331722	rs76589764	A	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr11	58377817	rs35722378	AC	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.943;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr11	58378382	rs2245938	G	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	58379663	.	C	CGT	1823.73	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr11	58380192	rs35224542	C	CT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.037;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	58381686	rs1938596	A	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr11	58391538	rs17152779	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr11	58478026	rs675423	G	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	58478039	rs675757	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	58478084	rs675815	T	C	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	58492073	rs58778620	GTT	G	324.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	58605922	rs10896850	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	58674952	rs35731745	G	GT	585.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr11	58715513	rs11229707	T	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	58919432	rs79022489	A	G	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:131,160:0.55:291
chr11	58949852	rs75403375	C	T	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:283,192:0.40:475
chr11	58967100	rs116348220	G	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:73,82:0.53:155
chr11	59056153	rs1894123	C	T	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.32;QD=25.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	59132798	rs7941190	G	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	59132882	rs10896964	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	59189405	rs9988824	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr11	59210550	rs7947825	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	59211188	rs6591536	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:168,137:0.45:305
chr11	59211265	rs7941591	T	C	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr11	59224720	rs1453543	A	G	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:167,131:0.44:298
chr11	59271637	rs7120079	T	C	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:134,134:0.50:268
chr11	59368218	.	C	CA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.249;QD=1.83;ReadPosRankSum=-1.300;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:95,37:0.28:132
chr11	59369401	rs7106463	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	59378198	rs73486920	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	59420570	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.518;QD=2.11;ReadPosRankSum=0.317;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr11	59436207	rs150370443	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr11	59480951	rs499033	T	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	59623433	rs1042613	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	59626431	.	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.000;QD=8.62;ReadPosRankSum=-0.180;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	59629225	.	C	G	846.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr11	59629305	rs557564	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	59808034	rs492674	G	C	1802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.600;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:98,93:0.49:191
chr11	59814173	rs2276043	G	A	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:110,111:0.50:221
chr11	59814287	rs2276044	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr11	59829804	rs506053	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	59830103	rs481950	A	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr11	59830198	rs533855	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	59831716	rs1151065	C	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=3.297;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr11	59837097	rs528823	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr11	59837721	rs144234019	T	TTATGAAAA	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.533;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr11	59860178	rs502581	G	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	59863104	rs569108	A	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr11	59939511	rs116142510	T	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr11	59940396	rs595718	A	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	59940400	rs2044979	C	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=2.412;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	59940403	rs2044978	A	G	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=2.412;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	59940407	rs592346	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	59940623	rs115850805	G	C	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,96:0.49:195
chr11	59942815	rs7935829	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	59945745	rs12453	T	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr11	59946302	rs598862	C	T	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=41.19;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	59946310	rs5792172	CA	C	3760.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.682;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.357;QD=17.99;ReadPosRankSum=-0.779;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:11,198:0.95:209
chr11	59946466	.	T	A	24	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=0.9998;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=24;QD=29.3856062736;SC=TGTAGTGTAATGTAGTAGCTT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=59946474;WS=59946456;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	59949264	rs114663238	G	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr11	59997296	rs11230203	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr11	59997335	rs608659	T	C	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	60050125	rs10792260	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	60073597	rs4644658	C	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	60073702	rs3018806	A	T	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	60102790	rs1443250	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	60152563	rs950803	T	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr11	60152584	rs950802	G	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr11	60154242	rs2233249	C	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,94:0.48:197
chr11	60156843	rs112876842	A	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.017;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:74,52:0.41:126
chr11	60157107	rs2233252	T	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:4,243:0.98:247
chr11	60157166	rs2233253	C	T	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr11	60161438	.	T	TA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.476;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr11	60163958	rs6591579	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	60164204	rs2241920	G	A	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	60164302	rs2241921	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	60165352	rs3217518	ATT	A	6386.73	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:184,168:0.48:352
chr11	60172087	rs10750937	C	T	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:183,138:0.43:321
chr11	60172273	rs10897057	A	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	60173360	rs4938941	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr11	60173554	rs4939353	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr11	60182970	rs7131283	A	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr11	60184191	rs3825020	G	A	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:167,140:0.46:307
chr11	60198328	rs708229	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.568;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr11	60202747	rs894590	C	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	60202798	rs11377519	C	CA	399.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.962;SOR=0.491;set=HC	GT:AD:AF:DP	1/1:5,25:0.83:30
chr11	60230722	rs10792278	G	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.70;ReadPosRankSum=-1.308;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	60264755	rs2298551	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr11	60264947	rs2298552	C	T	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:120,127:0.51:247
chr11	60265002	rs2298553	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr11	60265164	rs2298554	G	A	69.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	60268679	rs2186918	G	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	60268736	rs2298555	C	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr11	60271325	rs2298556	A	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr11	60285575	rs10736706	A	G	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.200;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr11	60291413	rs6591595	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr11	60309947	rs4939400	A	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	60470914	rs35956659	G	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr11	60476410	.	T	C	226.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr11	60479483	rs149773189	T	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr11	60504424	rs11363998	CT	C	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.225;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:61,50:0.45:111
chr11	60511059	rs11821421	A	T	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr11	60531264	rs12363342	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr11	60538991	rs74350083	T	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:86,83:0.49:169
chr11	60539088	rs115197709	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr11	60558602	rs192008268	G	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:128,88:0.41:216
chr11	60559805	rs931861	A	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:139,134:0.49:273
chr11	60561378	rs60628152	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr11	60563312	rs74538275	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr11	60567230	rs11230483	C	T	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.685;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:83,94:0.53:177
chr11	60567275	rs579967	G	A	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	60615577	rs75840673	C	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr11	60617646	rs495949	T	C	16913.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,665:1.00:665
chr11	60620585	rs2467642	A	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	60620590	rs2428461	C	G	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	60621283	rs11230507	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr11	60635091	rs550479	T	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	60637164	rs489172	C	T	25928.77	.	AC=2;AF=1.00;AN=2;DB;DP=1026;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,995:1.00:995
chr11	60638470	rs566411	A	G	14822.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr11	60658566	.	ACC	A,AC	100	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.4984,0.5016;HP=17;HapScore=3;MGOF=137;MMLQ=26;MQ=59.23;NF=1,1;NR=4,4;PP=11,100;QD=4.0;SC=GATTCCCCCCACCCCCCCCCC;SbPval=0.91;Source=Platypus;TC=10;TCF=4;TCR=6;TR=5,5;WE=60658575;WS=60658556;set=Platypus	GT:AF:DP	0/1:0.50:10
chr11	60668921	rs140263447	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr11	60673682	rs35711830	C	CG	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	60689445	rs555835	T	C	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:105,100:0.49:205
chr11	60703431	rs146436980	C	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr11	60705454	rs2905692	A	G	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	60714009	rs150522108	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr11	60750048	rs2905506	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	60750240	rs3019541	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	60750298	rs72195127	GTCTGCAGGGAC	G	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	60776103	rs61899223	T	C	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:163,178:0.52:341
chr11	60776209	rs11230563	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:128,88:0.41:216
chr11	60776306	rs2074225	CG	TC	4578.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;JOINED;set=Intersection	GT:AD:AF:DP	0/1:115,119:0.51:234
chr11	60776334	rs2905518	A	G	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	60778630	rs117785308	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:122,77:0.39:199
chr11	60778650	rs150035626	C	CGTGT,CGTGTGT	3588.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=160;set=Intersection	GT:AF:DP	1/2:0.23,0.70:102
chr11	60778704	rs112209800	G	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr11	60783126	rs3019556	C	T	34313.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=44.74;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,767:1.00:767
chr11	60783135	rs3019557	A	G	35423.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=43.52;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,814:1.00:814
chr11	60784934	rs2074231	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	60785038	rs2074232	A	G	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	60785352	rs1050922	A	G	7265.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	60785723	rs59258857	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.13;ReadPosRankSum=-0.132;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	60785952	rs144632420	C	CAAGGGGAAAAGGAGAAAGG	965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=6.778;MLEAC=1;MLEAF=0.500;MQ=62.90;MQRankSum=2.950;QD=28.40;ReadPosRankSum=-0.832;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr11	60889159	rs35979264	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr11	60889398	rs7108787	G	A	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-2.775;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:72,56:0.44:128
chr11	60890563	rs4245224	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr11	60890608	rs11230602	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr11	60891283	rs7103357	A	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:121,132:0.52:253
chr11	60891310	rs7106643	T	C	10406.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr11	60892606	rs637186	A	G	10890.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr11	60893235	rs2229177	C	T	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:221,209:0.49:430
chr11	60893406	rs112377946	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr11	60899701	rs2232143	T	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr11	60899719	rs112585118	G	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr11	60899767	rs754382	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	60906450	rs508970	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	61018328	rs603061	A	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr11	61031942	rs185107906	C	T	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-1.470;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:174,99:0.36:273
chr11	61039059	rs12277294	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	61040523	rs141336947	A	AAAC	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr11	61043911	rs12280596	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr11	61058867	rs6591651	T	C	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:94,85:0.47:179
chr11	61076372	rs11230664	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	61077636	rs11822158	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	61089037	rs12290116	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr11	61093076	rs56207912	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr11	61093245	rs7108142	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr11	61094148	rs28720273	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	61100308	rs2512810	G	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.94;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	61106525	rs2512809	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	61106892	rs2513329	G	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.126;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:47,64:0.58:111
chr11	61108974	rs2260655	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr11	61110169	rs4939514	A	C	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:230,238:0.51:468
chr11	61112802	rs2305465	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,101:0.49:206
chr11	61123965	rs76030461	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	61165280	rs3741265	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	61165731	rs11382548	C	CA	7338.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	61165741	rs10897158	G	C	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	61179285	rs3019198	G	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	61183554	rs80264062	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	61197460	rs34378918	GC	G	1039.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr11	61204361	rs896831	A	C	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	61205434	rs879647	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	61205676	rs5792226	C	CT	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.588;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr11	61249383	rs3019200	C	A	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	61253200	rs3019187	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	61253973	rs2957858	A	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	61254376	rs3019188	G	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	61286328	rs201838981	T	TACCCCACAG	1691.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr11	61295316	rs2943812	A	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.707;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr11	61305818	rs10687819	G	GGAGA	225.75	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=32.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	61404161	rs67140840	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr11	61487690	rs198430	G	A	1999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.228;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:85,103:0.55:188
chr11	61490880	rs9735635	C	A	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:156,155:0.50:311
chr11	61491097	rs566009	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	61496657	rs198417	C	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr11	61505168	rs198444	G	A	10427.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-1.667;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:2,411:1.00:413
chr11	61505583	rs2240287	G	A	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:115,137:0.54:252
chr11	61505696	rs198443	G	T	17128.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr11	61508522	rs198440	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	61511498	rs3741252	C	T	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,119:0.49:245
chr11	61523300	rs10709102	GA	G	582.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	61524507	rs2238001	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,52:0.44:118
chr11	61524974	rs198460	G	A	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:119,129:0.52:248
chr11	61534872	rs547589	A	C	8278.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	61536583	rs579383	G	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	61548559	rs509360	A	G	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:96,106:0.52:202
chr11	61548874	rs174532	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr11	61557803	rs102275	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.47;ReadPosRankSum=-0.514;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	61624705	rs498793	T	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr11	61624885	rs526126	G	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	61625115	rs2277284	G	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr11	61641211	rs6591665	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	61647427	rs174635	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	61658629	rs693672	T	C	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	61658800	rs174465	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr11	61670037	rs174471	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr11	61674118	rs174476	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,82:0.54:153
chr11	61719387	rs1800007	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-1.054;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:73,81:0.53:154
chr11	61724292	rs760306	C	T	5018.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:266,256:0.49:522
chr11	61724514	rs195162	C	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	61725599	rs113492158	A	ATCCTCCTCC,ATCCTCC	3847.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/1:1.00:79
chr11	61726871	rs195158	G	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	61730036	rs149698	G	A	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:114,119:0.51:233
chr11	61730234	rs1800009	T	C	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:86,100:0.54:186
chr11	61731534	rs195155	G	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	61735553	rs11271453	T	TGCTGCAGATTGGGAA	3244.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	61895541	rs1675130	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	61895741	rs1675131	A	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	61896215	rs1792946	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	61897197	rs1792944	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	61897359	rs1675133	C	T	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	61906299	rs1614060	A	G	9124.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	61906374	rs1675126	T	C	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,406:1.00:408
chr11	61907909	rs1675124	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	61908440	rs2277283	T	C	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:234,263:0.53:497
chr11	61908672	rs1675123	G	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	61913196	rs7129085	G	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	61914056	rs11230931	G	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	61915823	rs3890102	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr11	61960763	rs11441356	T	TC	2584.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	61960809	rs7951859	C	A	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.88;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	61960827	rs2232941	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.17;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	61976201	rs116252301	G	A	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:160,188:0.54:348
chr11	61977858	rs201416395	CTTTTTTT	C	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.825;QD=23.76;ReadPosRankSum=2.582;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr11	62009883	rs2232948	C	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr11	62010667	rs2232949	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr11	62040694	rs59964144	T	TACAC,TAC	227.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	0/1:0.80:10
chr11	62064846	rs57957568	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr11	62105391	rs2513749	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.289;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	62105441	rs3741245	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr11	62123699	rs112624583	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr11	62123726	rs368001431	AC	A	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr11	62123753	rs111315597	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr11	62123989	rs67821209	T	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr11	62124696	.	CTTTTGTTTTGTTTTG	C,CTTTTGTTTTGTTTTGTTTTG	435.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=20;set=Intersection	GT:AF:DP	1/2:0.58,0.42:12
chr11	62158886	rs2958531	G	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	62158924	rs2958532	C	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr11	62159187	rs3832779	G	GA	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	62159582	.	G	C	1838.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:105,99:0.49:204
chr11	62190448	rs11231085	C	G	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:125,125:0.50:250
chr11	62201333	rs373369784	G	A	2894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.678;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:130,155:0.54:285
chr11	62201458	rs4084164	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.259;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr11	62284888	rs11555628	G	A	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,68:0.52:130
chr11	62292882	rs566144	G	T	10226.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	62300968	rs115603331	G	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:145,127:0.47:272
chr11	62328038	rs11231144	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr11	62334096	rs7124057	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	62334908	rs1061093	G	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr11	62365619	rs11231155	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	62365665	rs2849031	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr11	62369018	rs12226821	C	G	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr11	62369881	rs35156678	G	A	2996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=0.085;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:87,80:0.48:167
chr11	62369884	rs35880596	C	G	2910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=0.260;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:87,77:0.47:164
chr11	62370155	rs71490394	G	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,108:0.48:227
chr11	62370490	rs71458425	C	CGAGGGCCG	5746.73	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:192,142:0.43:334
chr11	62371773	rs2516633	A	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr11	62378660	rs12808829	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr11	62378801	rs11553576	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr11	62380027	rs113222038	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	62380732	rs4387351	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	62381106	rs1799959	G	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	62381483	rs72927237	T	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	62381703	rs35904570	C	CT	4113.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:172,139:0.45:311
chr11	62381808	rs1801144	G	C	6752.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:290,331:0.53:621
chr11	62383715	rs12794886	G	C	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=8.797;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.735;SOR=1.744;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr11	62384869	rs4963224	T	C	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	62394445	rs11231166	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:84,91:0.52:175
chr11	62394881	rs7949030	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr11	62397114	rs76572368	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.111;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr11	62397177	rs948683	C	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	62400016	rs10897289	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr11	62401716	rs2957121	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	62417595	.	A	AT	224.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr11	62430659	rs597259	T	A	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=2.184;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:50,62:0.55:112
chr11	62432815	rs4489748	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr11	62434173	rs11231181	G	A	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:101,119:0.54:220
chr11	62438750	rs17637597	T	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.101;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:44,45:0.51:89
chr11	62438819	rs693698	G	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr11	62438846	rs3809079	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr11	62439569	rs13941	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr11	62458275	rs6856	T	C	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:144,80:0.36:224
chr11	62459994	rs2850597	A	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr11	62460066	rs2850596	T	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr11	62469929	rs72929434	C	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr11	62487378	rs12291015	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	62488916	rs34425182	T	TG	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.269;QD=15.22;ReadPosRankSum=-0.260;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr11	62489267	rs496032	C	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:133,118:0.47:251
chr11	62490219	rs576251	G	A	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:185,179:0.49:364
chr11	62496519	rs584845	T	C	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:127,130:0.51:257
chr11	62500444	rs143308039	CT	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.261;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr11	62505764	rs6675	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:94,65:0.41:159
chr11	62519422	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.47;ReadPosRankSum=0.887;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr11	62521408	rs72929469	A	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr11	62521475	rs72929471	T	C	5174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.118;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:308,264:0.46:572
chr11	62521663	rs3829248	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,45:0.48:94
chr11	62533261	.	C	CT	44.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.524;QD=4.47;ReadPosRankSum=0.385;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	62546491	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=19.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-2.020;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr11	62555059	rs3087924	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr11	62563353	rs539465	G	A	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	62564009	rs4693	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr11	62603339	rs202145747	C	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:172,173:0.50:345
chr11	62638321	.	AATAATAATTATT	A	1590.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=0.684;QD=33.14;ReadPosRankSum=-0.722;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:7,41:0.85:48
chr11	62638330	rs11231260	T	A	45.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=-0.747;QD=0.92;ReadPosRankSum=1.182;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr11	62638333	rs55725256	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=-0.747;QD=0.92;ReadPosRankSum=1.020;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr11	62638336	rs199540960	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=-0.747;QD=0.92;ReadPosRankSum=0.906;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr11	62652063	rs489381	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr11	62744899	rs3017670	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	62747145	rs3017671	A	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	62847453	rs7945121	T	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr11	62847562	rs7926818	G	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	62848367	rs10897341	A	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	62848487	rs11231341	A	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.349;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr11	62848995	rs6591733	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	62886319	rs948060	G	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.291;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr11	62902172	rs1939782	A	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	62910849	rs1939749	T	C	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr11	62911079	rs1939748	G	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr11	62931484	rs6591771	T	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	62931644	rs113276570	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	62933784	rs111442070	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr11	62951064	rs1525072	C	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	62951221	rs11231397	C	G	3625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=2.178;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:156,183:0.54:339
chr11	62951312	rs35175904	G	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr11	62984697	rs7949840	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr11	62984868	rs11231409	T	C	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr11	62985544	rs12417255	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	62987638	rs11336277	CA	C	54	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	62995875	rs7106186	G	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	62996162	rs7126435	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr11	62996682	rs74759635	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr11	63064823	rs576641	T	C	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:183,145:0.44:328
chr11	63064970	rs575009	T	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr11	63065056	rs117204398	T	A	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:105,131:0.56:236
chr11	63066903	rs515213	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr11	63067138	rs513338	T	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr11	63067181	.	A	AGTGTGTGTGTGT	322.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr11	63069715	rs557658	A	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	63071740	rs111482186	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr11	63129782	rs517655	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr11	63129876	rs516763	T	G	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	63137948	rs113253118	C	T	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=0.246;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:72,57:0.44:129
chr11	63137952	rs113747568	T	C	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.531;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:65,55:0.46:120
chr11	63138482	rs566456	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr11	63174050	rs61997169	C	T	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.821;QD=10.03;ReadPosRankSum=1.744;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:111,121:0.52:232
chr11	63175800	rs7109920	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	63176367	rs4088469	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	63177242	rs78795943	A	AT	4117.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr11	63177439	rs78640827	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr11	63233710	rs2275999	A	G	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:130,98:0.43:228
chr11	63233996	rs11231499	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	63258416	rs10897424	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	63283220	rs3740633	C	G	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	63284035	rs3781604	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	63313644	rs584905	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	63357919	rs593759	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	63381458	rs61929725	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr11	63398495	rs148102000	TCAG	T	526.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr11	63400493	rs17656941	C	T	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:90,107:0.54:197
chr11	63410985	rs12274980	G	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr11	63413962	rs147319344	AAAAT	A	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.941;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	63419880	rs61928195	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr11	63438836	rs2959880	C	T	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr11	63438972	rs74383103	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-1.941;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	63449125	rs11551944	C	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:84,65:0.44:149
chr11	63487386	rs542998	T	C	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.614;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:101,66:0.40:167
chr11	63523428	.	C	CA	36	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=0.9999;HP=14;HapScore=2;MGOF=5;MMLQ=16;MQ=58.99;NF=3;NR=0;PP=36;QD=13.3333333333;SC=GGCTCCGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=3;WE=63523436;WS=63523418;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr11	63531175	rs2959886	C	G	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-1.819;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:111,69:0.38:180
chr11	63532464	rs80244664	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:50,65:0.57:115
chr11	63533905	rs11272963	A	ACAGCAATAAAAGGGATGG	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.588;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr11	63657494	rs4980528	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	63663130	.	CTTTTTTTTTTTT	C	1359.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=12.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.62;ReadPosRankSum=1.351;SOR=5.782;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr11	63668557	rs224174	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	63670387	rs1486936	C	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	63673603	.	CTGTG	C,CTG	1193.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.686;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.96;MQRankSum=0.669;QD=26.53;ReadPosRankSum=0.868;SOR=1.814;set=HC	GT:AD:AF:DP	1/2:3,8,34:0.18,0.76:45
chr11	63676313	rs56263226	G	GC	1173.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr11	63679369	rs320108	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	63680297	rs320110	A	G	13202.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	63681513	rs10897461	T	C	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	63681648	rs4980533	G	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	63682312	rs4375445	G	C	21763.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	63682315	rs34212439	C	G	21886.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr11	63682318	rs11231638	G	C	21653.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	63682869	rs3802941	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	63683758	rs12291042	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-1.158;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr11	63706441	rs28683669	G	A	93.85	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.90;QD=15.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	63706441	.	G	GGA	239	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=0.9998;HP=13;HapScore=2;MGOF=26;MMLQ=16;MQ=61.48;NF=5;NR=2;PP=239;QD=34.7142857143;SC=GGGGGGGGGGGGAAGCTGCGA;SbPval=0.42;Source=Platypus;TC=10;TCF=8;TCR=2;TR=7;WE=63706449;WS=63706431;set=Platypus	GT:AD:AF:DP	1/1:3,7:0.70:10
chr11	63713239	rs3740636	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	63720086	rs4980513	T	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	63764755	rs80057132	G	A	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:128,151:0.54:279
chr11	63883985	rs614397	T	C	6437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.938;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:411,343:0.45:754
chr11	63884027	rs614035	C	T	4625.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:345,242:0.41:587
chr11	63884453	rs3751120	C	T	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:225,185:0.45:410
chr11	63885305	rs3824854	C	T	4897.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:289,256:0.47:545
chr11	63885632	rs4379854	A	G	12509.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	63885704	rs677447	C	T	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:270,256:0.49:526
chr11	63918589	rs2282492	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-0.290;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	63962152	rs2282490	T	C	2404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=0.696;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr11	63962162	rs67546972	G	A	2329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=-0.931;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr11	63964657	rs2236648	C	T	83.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	63965534	rs35235491	C	CT	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	63967770	rs11231722	C	G	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.790;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:114,101:0.47:215
chr11	63971256	rs148030896	C	CTTTG	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr11	63986713	rs11603538	C	A	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=4.245;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:147,102:0.41:249
chr11	63988102	rs3802933	C	T	3782.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:223,194:0.47:417
chr11	63990996	rs5792315	AC	A	2305.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	63991801	rs1059440	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:93,75:0.45:168
chr11	63992866	rs10897477	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr11	63994230	rs2286612	G	T	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:149,145:0.49:294
chr11	63994692	rs1860368	T	C	3267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=2.624;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:138,154:0.53:292
chr11	63994696	rs2429456	T	C	10640.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.07;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	63995302	rs2429455	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.030;QD=11.51;ReadPosRankSum=0.667;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	63997329	rs633561	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	63997338	rs633557	T	C	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	63997882	rs11311686	AT	A	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.109;QD=4.31;ReadPosRankSum=-0.793;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:60,50:0.45:110
chr11	63999240	rs3741404	G	C	164.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	64000410	rs1058735	C	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr11	64002238	rs7482791	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	64003843	rs11603042	G	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr11	64004557	rs67110559	AAGAGAGAGAGAGAGAG	A	188.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	64004643	rs12294913	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.616;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr11	64010085	rs2070765	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr11	64011441	rs654573	T	C	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	64012225	rs605187	G	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	64012784	rs12798333	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.108;QD=6.56;ReadPosRankSum=0.593;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:74,44:0.37:118
chr11	64012949	rs57467371	TG	T	81	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	64019006	rs371707004	TGGCG	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr11	64022459	rs632439	A	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	64022814	rs2302262	C	G	4446.73	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:204,223:0.52:427
chr11	64024048	rs28395875	G	C	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:139,149:0.52:288
chr11	64030944	rs2510067	T	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	64034773	rs7939107	C	T	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.520;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:110,84:0.43:194
chr11	64034866	rs7938380	G	A	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr11	64037407	rs10556	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr11	64044629	rs1468558	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr11	64052306	rs652611	T	G	11047.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	64064857	.	G	A	3488.77	.	AC=1;AF=0.500;AN=2;DP=353;set=Intersection	GT:AD:AF:DP	0/1:172,169:0.50:341
chr11	64066859	rs2232417	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr11	64068310	rs2286614	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,81:0.53:152
chr11	64070930	rs66968227	T	C	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.091;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:70,54:0.44:124
chr11	64081445	rs2276014	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.229;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr11	64082437	rs650008	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr11	64082807	rs11600990	C	T	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=-0.077;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:34,54:0.61:88
chr11	64083269	rs201336331	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-8.909;QD=2.17;ReadPosRankSum=0.424;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:87,12:0.12:99
chr11	64083276	rs200055490	A	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-7.963;QD=3.17;ReadPosRankSum=-1.402;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr11	64083290	rs150848359	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-7.387;QD=2.10;ReadPosRankSum=-0.649;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr11	64083293	rs201971362	G	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-7.145;QD=2.37;ReadPosRankSum=-0.994;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:53,8:0.13:61
chr11	64083295	.	CGGG	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-7.445;QD=2.38;ReadPosRankSum=-0.669;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:50,7:0.12:57
chr11	64083300	rs199950340	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-7.239;QD=2.29;ReadPosRankSum=-0.773;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr11	64085056	rs10128595	C	A	4995.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:224,251:0.53:475
chr11	64085074	rs550819	T	A	10020.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	64085785	rs7938623	A	G	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	64085938	rs7941847	T	C	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	64085967	rs2079786	T	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr11	64088435	rs566049	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	64088592	rs138194541	CTGTGGGAGAGAGTCCTCTG	C	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.849;QD=21.48;ReadPosRankSum=0.453;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	64108262	rs71456309	T	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr11	64109118	rs647152	T	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr11	64109315	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=2.225;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr11	64110348	rs11602301	T	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	64110614	rs78042412	G	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	64110683	rs479552	G	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr11	64110805	rs35692796	A	G	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:186,154:0.45:340
chr11	64110932	rs12808002	C	T	5105.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:219,248:0.53:467
chr11	64111928	rs685870	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr11	64116510	rs75328618	C	T	3534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.393;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:213,186:0.47:399
chr11	64116843	rs1318165	A	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	64117284	rs4930155	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr11	64118422	rs614047	G	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	64118849	rs7950922	G	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr11	64120435	rs489419	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr11	64121657	rs12798408	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	64127881	rs564687	T	G	7470.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	64127902	rs2289573	G	A	3338.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:157,167:0.52:324
chr11	64128494	rs71456310	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr11	64135907	rs117514762	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr11	64217446	rs80064167	G	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr11	64326795	rs2277312	A	G	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:101,105:0.51:206
chr11	64336315	rs79107937	G	GT	671.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr11	64338586	rs12294207	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-3.164;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr11	64367050	rs1705361	A	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	64367325	rs1630320	A	G	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	64367651	rs2022050	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr11	64367736	rs7929627	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	64367862	rs7932775	T	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	64368428	rs11231837	C	T	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.242;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:63,58:0.48:121
chr11	64402695	rs61884406	T	C	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr11	64415767	rs3825074	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:130,103:0.44:233
chr11	64415903	rs59739006	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.103;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr11	64419217	rs502571	TT	GC	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	64421052	rs534073	C	T	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.976;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:76,73:0.49:149
chr11	64436097	rs181354145	G	A	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:111,125:0.53:236
chr11	64465403	rs471618	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	64480930	rs12273892	A	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.230;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr11	64496587	rs559977	T	C	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr11	64497161	rs534221	C	T	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=25.681;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.792;QD=9.87;ReadPosRankSum=0.422;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:61,94:0.61:155
chr11	64497189	rs533515	A	C	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.474;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=22.065;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.755;QD=8.90;ReadPosRankSum=0.639;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:55,93:0.63:148
chr11	64503179	rs553618	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr11	64503496	rs556356	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr11	64503543	rs33956572	CT	C	646.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr11	64507315	rs550930	T	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr11	64507680	rs547280	A	C	6675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=1.583;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:325,330:0.50:655
chr11	64507799	rs546323	G	C	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:155,127:0.45:282
chr11	64510898	rs2904961	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr11	64511050	rs2073797	G	C	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.036;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:55,59:0.52:114
chr11	64520942	rs2959652	G	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr11	64522066	rs625172	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	64525216	rs589691	C	T	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:154,135:0.47:289
chr11	64525464	rs490980	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr11	64525644	rs489192	G	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	64535357	rs575375	T	C	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:109,134:0.55:243
chr11	64535849	rs561158	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	64536866	rs484886	T	C	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:94,79:0.46:173
chr11	64559898	rs10897526	T	C	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:209,200:0.49:409
chr11	64563934	rs483544	A	G	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	64564869	rs150967809	G	A	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:222,211:0.49:433
chr11	64567047	rs3832792	GCA	G	9950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.533;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:381,317:0.45:698
chr11	64572018	rs2959656	T	C	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	64572557	rs540012	A	G	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	64572602	rs2071313	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:90,75:0.45:165
chr11	64591972	rs10792447	T	C	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	64594490	rs646709	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	64596916	rs10897529	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	64597506	rs3741395	T	C	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	64597595	rs74447078	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:261,198:0.43:459
chr11	64598944	rs684071	A	G	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	64602782	rs11605623	C	T	13581.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr11	64603844	rs138577794	A	ACTCACCCAC	9062.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=2.073;MLEAC=2;MLEAF=1.000;MQ=62.16;MQRankSum=1.017;QD=27.71;ReadPosRankSum=0.049;SOR=0.402;set=HC	GT:AD:AF:DP	1/1:3,324:0.99:327
chr11	64605689	rs541525	A	G	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	64606765	rs676977	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	64606910	rs142726755	C	CCTGCTCCCA	3179.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	64621856	rs3897618	A	G	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	64622869	rs10897533	G	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	64641773	rs35867760	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.842;QD=2.12;ReadPosRankSum=-0.980;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	64645871	rs1211284	A	G	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	64665502	rs11827610	T	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr11	64669417	rs682673	T	C	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	64674676	rs34944753	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	64677273	rs61746813	C	T	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,67:0.60:112
chr11	64677293	rs656195	G	C	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	64678920	rs638583	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	64679331	rs60711419	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.200;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:44,34:0.44:78
chr11	64679362	rs35115827	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr11	64680407	rs594820	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	64680637	rs73474781	A	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr11	64695185	.	G	GA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.375;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr11	64700767	rs675090	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr11	64702200	rs673995	C	T	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:225,178:0.44:403
chr11	64702765	rs2307669	C	CTCTG	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr11	64707978	rs586616	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr11	64713485	rs596321	T	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr11	64715330	.	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=-0.000;QD=7.90;ReadPosRankSum=0.180;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	64718050	rs138174447	TTTTC	T	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=-0.031;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr11	64721908	rs495330	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr11	64726701	rs602404	A	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr11	64756526	rs11231918	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr11	64757504	rs574381	G	C	6006.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:265,287:0.52:552
chr11	64761779	rs626670	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	64789194	rs664226	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr11	64799486	rs76553073	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	64808647	rs10160811	A	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	64808681	rs34998502	AC	A	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64809044	rs3741390	C	T	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.41;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	64809061	rs112893496	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.639;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:52,73:0.58:125
chr11	64809090	rs12271134	T	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	64809133	rs10792455	T	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	64809167	rs10792456	A	G	451.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.78;ReadPosRankSum=-0.713;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	64834432	rs573957	T	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	64835415	rs3850946	C	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	64835463	rs149675910	ACT	A	484.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:104,33:0.24:137
chr11	64836207	rs12362669	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	64851453	rs35819335	CT	C	9724.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:6,371:0.98:377
chr11	64856500	rs525781	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr11	64878661	rs625004	T	C	13089.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr11	64880090	rs4930284	G	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	64883569	rs371857068	A	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr11	64883864	rs1706937	A	G	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	64884052	rs1546532	G	A	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	64889416	rs769440	G	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	64897453	rs1206196	C	T	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	64898357	rs11369296	G	GC	7660.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	64949119	rs17880457	G	A	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.143;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:47,87:0.65:134
chr11	64949152	rs17881181	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.448;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr11	64977783	rs2271446	C	T	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:184,202:0.52:386
chr11	64981853	rs239259	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr11	64990041	rs514076	G	C	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.807;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:79,71:0.47:150
chr11	64990162	.	C	T	160.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr11	64993195	rs10633296	C	CAGTA	2091.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	65000478	rs2904978	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.882;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	65000719	rs2904979	C	T	7750.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr11	65003812	rs625427	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	65004301	rs2904982	G	T	11547.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr11	65118971	rs620888	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	65124167	.	G	T	2979.77	.	AC=1;AF=0.500;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:81,139:0.63:220
chr11	65143701	rs80042162	CT	C	729.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr11	65144075	rs624307	T	C	13066.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	65147294	rs547221	G	A	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.908;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:110,123:0.53:233
chr11	65147862	rs573864	C	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	65157094	rs739389	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr11	65161129	rs2073800	C	T	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:238,186:0.44:424
chr11	65161328	rs4930154	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr11	65164114	rs7940559	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr11	65178620	rs2957274	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	65222952	rs1784858	T	C	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:136,222:0.62:358
chr11	65266298	rs77535011	A	C	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:61,164:0.73:225
chr11	65267406	rs60236485	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr11	65268198	rs7927113	G	A	7446.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:113,336:0.75:449
chr11	65268479	.	G	GT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.187;QD=0.79;ReadPosRankSum=1.214;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr11	65268565	rs368013106	G	C	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:63,137:0.69:200
chr11	65268695	rs143530985	A	AT	920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=11.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-3.255;SOR=0.131;set=HC	GT:AD:AF:DP	0/1:29,51:0.64:80
chr11	65270090	.	C	CT	1295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.419;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:62,90:0.59:152
chr11	65270976	rs73497102	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:50,119:0.70:169
chr11	65271779	rs36002528	CT	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.881;QD=1.94;ReadPosRankSum=1.553;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:136,51:0.27:187
chr11	65273568	rs11367099	TA	T	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.682;QD=1.46;ReadPosRankSum=2.062;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr11	65294223	rs1622368	G	A	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:16,109:0.87:125
chr11	65308174	rs147365999	C	CGGGCGGGGCCTACAGGAG	3634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=10.354;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=2.717;QD=19.23;ReadPosRankSum=0.756;SOR=1.736;set=HC	GT:AD:AF:DP	0/1:47,142:0.75:189
chr11	65310794	rs115231286	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr11	65314778	rs186511849	G	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.833;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr11	65314778	.	GCA	TCG	124	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=1;MGOF=25;MMLQ=24;MQ=58.24;NF=5;NR=1;PP=124;QD=29.5779791437;SC=TCTCACCACCGCACTCCAGCC;SbPval=0.73;Source=Platypus;TC=30;TCF=24;TCR=6;TR=6;WE=65314788;WS=65314769;set=Platypus	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	65314780	rs190969559	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.845;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr11	65314814	rs66973976	CG	C	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.494;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chr11	65314818	rs199773504	GGA	G	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.969;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr11	65320780	rs4244811	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-2.696;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:216,52:0.19:268
chr11	65338117	rs35971725	C	T	9603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.618;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:163,445:0.73:608
chr11	65347297	rs5792362	C	CA	150.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.738;QD=5.80;ReadPosRankSum=-0.125;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr11	65347636	rs1194100	G	C	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	65348583	rs75062275	G	A	8222.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:140,371:0.73:511
chr11	65349063	rs3741380	G	A	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.063;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:474,156:0.25:630
chr11	65349756	rs6591182	T	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-2.811;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr11	65349849	rs1194099	A	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.366;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:121,31:0.20:152
chr11	65357697	rs1151503	A	G	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	65359253	.	C	T	3148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.811;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:41,140:0.77:181
chr11	65359435	rs3829939	T	G	10664.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:169,503:0.75:672
chr11	65359625	rs4261292	C	G	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	65373621	rs1151527	A	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	65383896	rs7947140	G	C	22681.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,861:1.00:861
chr11	65384727	rs12790427	C	T	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:42,126:0.75:168
chr11	65385606	rs1151489	A	G	7745.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,300:1.00:301
chr11	65387012	rs57318451	C	T	5981.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:69,269:0.80:338
chr11	65387378	rs61744384	T	A	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.201;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:599,181:0.23:780
chr11	65388080	rs114170285	C	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr11	65389631	rs1144789	A	G	2810.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=8.027;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.67;ReadPosRankSum=-0.797;SOR=0.085;set=HC	GT:AD:AF:DP	1/1:4,120:0.97:124
chr11	65391317	rs12801636	G	A	11125.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr11	65408937	rs3741378	C	T	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:71,168:0.70:239
chr11	65412467	rs2306364	G	A	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-2.060;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:351,103:0.23:454
chr11	65415028	rs4930157	T	G	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	65417436	rs72556578	G	T	14002.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:243,623:0.72:866
chr11	65422591	rs7119750	C	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,80:0.71:112
chr11	65423082	rs1144792	G	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	65423305	rs12721573	C	T	10875.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:179,504:0.74:683
chr11	65427346	rs2306365	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr11	65427568	rs732072	G	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.006;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:265,69:0.21:334
chr11	65480090	rs2236682	G	T	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:47,149:0.76:196
chr11	65480768	rs4244812	A	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:54,120:0.69:174
chr11	65480791	rs551115	A	G	7147.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	65481166	rs1151500	T	C	10956.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr11	65481465	rs487264	T	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	65484569	rs563427	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	65546857	rs610037	A	C	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:113,159:0.58:272
chr11	65547775	rs114368095	C	T	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,112:0.68:165
chr11	65554680	rs10896044	C	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr11	65561468	rs644740	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr11	65562246	rs12294549	C	T	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:48,125:0.72:173
chr11	65562257	rs2276133	G	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:101,33:0.25:134
chr11	65562852	rs72922786	G	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr11	65601560	rs17854357	G	C	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:296,138:0.32:434
chr11	65617113	rs11327250	AG	A	7999.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	65623739	rs11227332	A	G	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:423,182:0.30:605
chr11	65630098	rs3216088	T	TG	1312.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:170,72:0.30:242
chr11	65634107	.	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DP=446;set=Intersection	GT:AD:AF:DP	0/1:271,165:0.38:436
chr11	65636053	rs601314	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:178,67:0.27:245
chr11	65637984	rs630394	C	G	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr11	65647796	.	C	CT	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=4.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.685;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:244,55:0.18:299
chr11	65649774	rs604630	A	G	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:232,114:0.33:346
chr11	65653242	rs568617	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	65655052	rs200077741	G	C	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:64,94:0.59:158
chr11	65655393	rs641018	G	C	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	65660873	rs34883725	G	GC	1323.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr11	65661656	rs507062	T	C	8166.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr11	65664346	rs637571	T	C	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	65667796	rs1058068	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr11	65684929	rs9667389	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr11	65685225	rs7947504	T	C	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.513;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:251,152:0.38:403
chr11	65688513	rs145219990	CTGGCCCCT	C	1899.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr11	65688996	.	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.166;QD=0.40;ReadPosRankSum=0.359;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr11	65713207	rs9795469	T	C	11028.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr11	65727301	rs491973	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	65732651	rs550435	G	A	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	65732800	rs552130	T	C	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr11	65733289	rs556643	G	A	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	65734539	rs1151505	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr11	65735174	rs660118	G	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr11	65744275	rs543952	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	65744421	rs542332	C	T	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	65745403	rs78664826	C	G	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,129:0.65:197
chr11	65746023	rs74949878	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr11	65746653	rs679581	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr11	65767153	rs507672	A	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	65767215	rs506873	G	T	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	65767893	.	G	GA	2561.73	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr11	65771050	rs147010511	TCACTGAG	T	1448.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	65780143	rs79437338	C	A	84.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=21.14;ReadPosRankSum=0.319;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr11	65780153	.	C	CA	99.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=19.83;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr11	65780702	rs9667817	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	65787666	rs3829937	G	A	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:124,211:0.63:335
chr11	65788072	rs3814747	C	T	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	65789137	rs34114713	C	G	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:348,178:0.34:526
chr11	65793454	rs1203998	C	T	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-0.065;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:84,42:0.33:126
chr11	65793797	rs1893316	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:180,94:0.34:274
chr11	65793874	rs3841469	CA	C	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr11	65803383	rs10791840	T	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,81:0.66:122
chr11	65810045	rs4565902	T	G	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.802;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:39,48:0.55:87
chr11	65810209	rs61895584	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.126;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:106,35:0.25:141
chr11	65810239	rs78578425	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr11	65810749	rs7937692	T	C	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	65824472	rs547404	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr11	65824994	rs2302883	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	65825455	rs376356384	AAAG	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.153;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr11	65826704	rs1049872	G	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=2.331;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr11	65829637	rs11227395	A	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	65868310	rs475817	T	A	18486.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr11	65868455	rs56269595	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr11	65983522	rs548858	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	65985000	rs557082	A	C	7258.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	65985168	rs512421	G	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr11	65997898	rs561948	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	66001418	rs2236651	C	T	6062.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:167,287:0.63:454
chr11	66002681	rs2236652	G	A	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr11	66003583	rs141812648	G	GGGGTACCCAGT	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	66006323	rs476551	G	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr11	66010633	rs524268	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	66031450	rs525698	T	C	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	66031660	rs1151539	C	T	1806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.201;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:313,118:0.27:431
chr11	66033301	rs474005	C	T	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:306,150:0.33:456
chr11	66033430	rs2276036	C	T	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:108,189:0.64:297
chr11	66036293	rs150627444	A	ACC,ACCC	9824.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=2.196;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.000;QD=36.94;ReadPosRankSum=0.799;SOR=1.785;set=HC	GT:AD:AF:DP	1/2:6,118,142:0.44,0.53:266
chr11	66040049	rs555853	G	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.120;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr11	66040053	rs555826	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	66043742	rs3831389	CCTT	C	4727.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:53,118:0.69:171
chr11	66050197	rs371370187	C	A	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.539;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:389,118:0.23:507
chr11	66050948	rs3016315	C	T	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	66052832	rs2282568	C	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:81,106:0.57:187
chr11	66054823	rs510398	C	T	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	66056457	rs7945723	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:56,106:0.65:162
chr11	66059782	rs6591210	T	C	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	66083129	rs3741367	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:105,42:0.29:147
chr11	66083782	rs3741368	G	A	3329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-0.310;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:405,200:0.33:605
chr11	66099987	rs1784029	C	T	4136.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:464,238:0.34:702
chr11	66100152	rs1784030	T	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	66101974	rs3016317	C	T	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.32;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	66101974	.	CGGAG	TGGAA,TGGAG	1003	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=27;MQ=59.9;NF=36,64;NR=33,60;PP=1003,705;QD=15.3111286212;SC=TATGGAGAGACGGAGCCTCAC;SbPval=0.57;Source=Platypus;TC=124;TCF=64;TCR=60;TR=69,124;WE=66101986;WS=66101964;set=Platypus	GT:AF:DP	0/1:0.56:124
chr11	66101978	rs10896110	G	A	3076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.996;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:92,148:0.62:240
chr11	66102807	rs10444359	G	A	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=3.283;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,134:0.71:190
chr11	66103046	rs3016763	C	T	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	66104057	rs3016316	T	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	66104993	rs3116068	C	T	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:88,167:0.65:255
chr11	66107527	rs1785633	C	A	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.842;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:375,139:0.27:514
chr11	66107674	rs1784035	A	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	66108660	rs947978	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,55:0.35:157
chr11	66108894	rs2236679	G	C	11916.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:258,577:0.69:835
chr11	66109033	rs11537993	T	C	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:365,211:0.37:576
chr11	66109527	rs112182142	C	CTGTGTG	1562.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:119,50:0.30:169
chr11	66109779	rs1784037	AT	GA	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	66130736	rs1039593	A	G	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	66131149	rs1039594	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr11	66131906	rs7125100	A	G	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	66133311	rs4930358	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	66133336	rs2279861	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=1.508;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr11	66134085	rs8187658	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	66135179	rs2279862	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:142,69:0.33:211
chr11	66135898	rs2292123	T	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	66138894	rs7946434	G	C	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	66188904	rs111442339	T	C	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:42,98:0.70:140
chr11	66193600	rs3215144	TG	T	113.52	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr11	66203341	rs115344092	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr11	66206169	rs11110	C	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.648;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr11	66240882	rs2277302	T	C	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:74,168:0.69:242
chr11	66247986	rs116082153	G	T	5794.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:143,281:0.66:424
chr11	66255515	rs4930378	T	C	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:105,120:0.53:225
chr11	66261044	rs76777675	C	T	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=1.486;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:62,126:0.67:188
chr11	66262806	rs10791878	T	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	66272142	rs1671063	A	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	66278059	rs1791688	C	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	66278426	rs113981353	A	G	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:58,156:0.73:214
chr11	66284057	rs140293798	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr11	66285268	rs10736656	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	66285925	.	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.251;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr11	66288733	rs10896125	G	C	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr11	66299515	rs8432	A	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	66302724	rs12272545	A	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.67;ReadPosRankSum=0.485;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:8,47:0.85:55
chr11	66302788	rs147729764	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr11	66303972	.	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.298;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr11	66313203	rs2305534	T	C	5670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.623;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:184,282:0.61:466
chr11	66314530	rs200315462	C	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.844;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr11	66318529	rs75830916	C	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,100:0.63:159
chr11	66318972	rs490998	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr11	66321927	rs56394515	C	CA	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.325;QD=3.14;ReadPosRankSum=2.789;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:104,55:0.35:159
chr11	66324583	rs678397	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	66324762	rs677488	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.273;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr11	66326581	rs2275998	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr11	66326713	.	A	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.360;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:100,17:0.15:117
chr11	66327002	.	C	T	483.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr11	66327673	rs1671064	G	A	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	66327959	rs79654508	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr11	66328095	rs1815739	T	C	10124.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	66328719	rs618838	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	66328877	rs607736	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:77,50:0.39:127
chr11	66329243	rs74345685	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=-1.709;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr11	66329732	rs540874	A	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr11	66331458	rs572846	A	G	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	66331571	rs148155987	G	A	6550.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:124,306:0.71:430
chr11	66333327	rs114727660	C	T	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:61,131:0.68:192
chr11	66333598	rs545009	C	T	12224.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr11	66335273	rs77395890	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr11	66335308	rs2242663	T	C	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=1.608;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:120,61:0.34:181
chr11	66335415	rs74919483	C	G	9360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=0.506;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:225,446:0.66:671
chr11	66335548	rs1127894	A	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	66335832	rs1044522	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.125;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr11	66336060	rs74759728	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	66406070	rs670900	A	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	66438278	.	C	CA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.640;QD=1.68;ReadPosRankSum=1.182;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr11	66472274	rs4930388	T	C	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	66481264	rs615536	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	66583759	rs7930203	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	66583779	rs543191	T	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	66610645	rs7570	G	C	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	66626234	rs3741194	T	C	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.149;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:189,104:0.35:293
chr11	66636388	rs142309583	G	A	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:146,214:0.59:360
chr11	66812338	rs11227668	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr11	66833265	rs12803688	G	A	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:76,186:0.71:262
chr11	66833392	rs376463937	G	A	4940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=1073;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.432;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:749,316:0.30:1065
chr11	66837965	rs4930409	T	C	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	66982717	rs189683982	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr11	66995603	rs3741189	T	C	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.693;QD=5.02;ReadPosRankSum=-3.290;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:231,109:0.32:340
chr11	67012606	rs117322901	T	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:95,70:0.42:165
chr11	67017445	rs34463980	C	CA	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr11	67034266	rs2228418	C	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr11	67050292	rs2071007	G	A	2823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.860;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:302,160:0.35:462
chr11	67052466	rs10896164	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:203,122:0.38:325
chr11	67057092	rs368498130	GC	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.25;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr11	67057104	rs11227758	C	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.31;ReadPosRankSum=0.170;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	67059217	.	G	A	1371.77	.	AC=1;AF=0.500;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	0/1:140,74:0.35:214
chr11	67068859	rs2298815	T	C	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.427;QD=6.20;ReadPosRankSum=1.631;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:296,164:0.36:460
chr11	67071584	rs4244822	C	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:108,62:0.36:170
chr11	67076810	rs3737460	T	G	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:153,71:0.32:224
chr11	67135006	rs867193	A	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:59,147:0.71:206
chr11	67141184	rs35544864	C	CT	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.777;QD=8.07;ReadPosRankSum=-2.032;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr11	67160321	rs1624816	T	C	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:70,132:0.65:202
chr11	67160890	.	TGGGTGTGGGCCTGCATGGGACAG	T	1300.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:95,39:0.29:134
chr11	67164791	rs872110	T	C	6229.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:133,272:0.67:405
chr11	67169378	.	T	C	789.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr11	67171736	rs2514256	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:46,136:0.75:182
chr11	67176898	rs11227788	A	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,55:0.53:103
chr11	67177278	rs7122299	G	A	9484.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	67183492	rs34596169	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr11	67186000	rs1790733	A	G	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:125,165:0.57:290
chr11	67186271	rs868167	C	A	3405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-1.404;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:109,167:0.61:276
chr11	67191449	rs1790747	T	C	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:146,235:0.62:381
chr11	67192107	rs1790748	T	A	202.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr11	67192555	rs1626067	G	A	2823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.030;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:114,143:0.56:257
chr11	67196049	rs35363135	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.706;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr11	67196237	rs1476792	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr11	67199706	rs1638588	C	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr11	67201008	rs1790753	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr11	67202044	rs1790752	G	A	5102.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:109,232:0.68:341
chr11	67202156	rs13859	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr11	67208426	rs58999825	C	T	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:65,105:0.62:170
chr11	67218909	rs949252	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:41,114:0.74:155
chr11	67219002	rs949251	T	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:71,132:0.65:203
chr11	67219119	rs1638558	C	T	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:103,186:0.64:289
chr11	67219247	rs1638559	G	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr11	67220004	rs1790756	C	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:58,145:0.71:203
chr11	67220175	rs1638560	A	G	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.670;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:69,85:0.55:154
chr11	67223086	rs1790765	C	T	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:142,260:0.65:402
chr11	67223920	rs1638564	CA	GC	6363.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;JOINED;set=Intersection	GT:AD:AF:DP	0/1:117,164:0.58:281
chr11	67226249	rs1790736	T	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr11	67235106	rs56405884	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,49:0.80:61
chr11	67235699	rs1638576	C	A	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr11	67257273	rs611697	G	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr11	67257823	rs641081	C	A	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:405,206:0.34:611
chr11	67258391	rs4930199	A	G	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	67262282	rs202207490	C	CGA	1667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.843;QD=8.30;ReadPosRankSum=0.031;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:146,55:0.27:201
chr11	67262289	.	G	GCGAGTGGA	1860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.762;QD=8.70;ReadPosRankSum=0.004;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:153,61:0.29:214
chr11	67263767	rs618633	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr11	67286668	rs73506069	T	C	6829.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:160,317:0.66:477
chr11	67288594	rs2276118	C	T	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.650;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-1.598;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:273,162:0.37:435
chr11	67351531	rs1079719	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	67351540	rs1871041	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	67351774	rs2370143	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr11	67351827	rs8191446	G	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr11	67352256	rs762803	C	A	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	67352689	rs1695	A	G	2882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.577;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:452,191:0.30:643
chr11	67353844	rs1871042	C	T	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.383;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:492,189:0.28:681
chr11	67353970	rs4891	T	C	2800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.045;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:383,180:0.32:563
chr11	67372477	rs12421329	G	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:154,66:0.30:220
chr11	67372593	rs12793832	A	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-2.030;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr11	67374581	rs1871043	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr11	67375162	rs1382089	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.582;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr11	67375184	rs7948073	T	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr11	67395714	rs7124513	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:257,103:0.29:360
chr11	67399173	rs146672518	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.249;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr11	67399735	rs2514021	T	C	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:277,128:0.32:405
chr11	67401635	rs12787511	G	C	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:161,86:0.35:247
chr11	67402362	rs3758938	T	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:232,83:0.26:315
chr11	67407146	rs2447591	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr11	67412203	rs143278298	C	CCA	1896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.288;QD=19.55;ReadPosRankSum=2.144;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:26,71:0.73:97
chr11	67414492	rs948445	C	T	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	67430589	rs78402723	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	67430762	rs1551886	T	C	9400.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	67431038	rs1979375	G	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	67431110	rs1979376	G	A	7448.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=3.424;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=1.313;SOR=0.536;set=HC	GT:AD:AF:DP	1/1:1,285:1.00:286
chr11	67432804	rs2447571	T	C	12538.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr11	67432854	rs6591270	T	C	9317.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr11	67433708	rs5792424	C	CG	7290.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	67433758	rs1551887	G	A	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	67433869	rs1551888	C	T	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	67434010	rs1871032	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr11	67434416	rs4646823	C	A	7641.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	67564034	rs79787139	A	G	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.24;QD=25.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	67564056	rs74682508	T	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	67564068	rs77439896	C	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr11	67564104	rs10896235	C	T	1060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=0.371;QD=13.78;ReadPosRankSum=-0.037;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:29,48:0.62:77
chr11	67564135	rs77521350	G	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.26;QD=26.05;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	67564181	rs79260939	G	A	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:143,90:0.39:233
chr11	67564197	rs72657419	T	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	67564238	rs77785393	C	T	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.69;QD=43.86;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	67564241	rs80309804	C	T	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=45.44;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	67765163	rs5792426	A	AG	6842.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	67786064	rs11433668	A	AC	7644.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	67786398	rs4244839	T	C	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,110:0.67:163
chr11	67786764	rs1636207	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr11	67789138	rs2286168	C	T	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:32,90:0.74:122
chr11	67789293	rs58160034	G	GC	19596.73	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr11	67790278	rs3764817	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:47,79:0.63:126
chr11	67790340	rs3764816	A	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr11	67793448	rs2286164	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,92:0.62:149
chr11	67793509	rs2286163	C	T	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:108,192:0.64:300
chr11	67795378	rs11436139	G	GC	20079.73	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr11	67798361	rs57503021	G	GCC	990.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.615;QD=17.69;ReadPosRankSum=0.627;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr11	67798363	rs200951888	T	TCAGGGCGCCGGCC	1284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.647;QD=20.72;ReadPosRankSum=1.130;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr11	67798567	rs1122731	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr11	67799731	rs3133266	C	G	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	67799926	rs2075626	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr11	67800494	rs3115545	T	G	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	67801282	rs3133267	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	67801517	rs3115546	G	T	11633.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:1,447:1.00:448
chr11	67803215	rs2075627	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr11	67804074	rs1051806	C	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr11	67804156	rs3133269	C	T	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	67808938	rs7116924	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr11	67810341	rs3808974	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr11	67811262	rs10896289	C	A	7233.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:233,352:0.60:585
chr11	67814473	rs5792432	C	CT	156.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.850;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chr11	67814979	rs2471829	G	C	14132.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr11	67821585	rs374879529	A	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:96,142:0.60:238
chr11	67837771	rs3819255	A	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr11	67842369	rs2512611	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	67888793	.	G	GCTGCGGCGA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=3.726;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	67941390	rs3832715	G	GA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.232;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:58,23:0.28:81
chr11	67957518	rs2512606	A	T	11039.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	68029887	rs78911714	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.121;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:173,52:0.23:225
chr11	68031011	rs113378449	T	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr11	68080214	.	CGCT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.196;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr11	68131167	rs10791978	A	T	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	68170825	rs687482	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.28;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	68170825	.	AAAGTTGCG	GAAGTTGCG,GAAGTTGCT	263	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=37;MMLQ=27;MQ=60.0;NF=18,3;NR=3,1;PP=263,82;QD=14.1795815499;SC=AGGTGCAGGTAAAGTTGCGGC;SbPval=0.58;Source=Platypus;TC=21;TCF=18;TCR=3;TR=21,4;WE=68170841;WS=68170823;set=Platypus	GT:AF:DP	0/1:1.00:21
chr11	68170833	rs686921	G	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=-1.526;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr11	68171013	rs545382	T	C	3928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.095;QD=7.76;ReadPosRankSum=-0.621;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:291,215:0.42:506
chr11	68173861	rs471966	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr11	68179166	rs689179	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr11	68192518	rs554734	T	G	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:107,185:0.63:292
chr11	68192630	rs17149104	C	T	5753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.337;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:155,275:0.64:430
chr11	68201224	rs11574425	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:102,192:0.65:294
chr11	68201295	rs3736228	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:103,49:0.32:152
chr11	68305494	rs60212556	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr11	68305521	rs11403965	G	GT	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr11	68315798	rs10736668	C	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	68326236	rs12271290	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	68331715	rs10501398	C	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr11	68341722	rs3740631	T	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:59,92:0.61:151
chr11	68343593	rs3740629	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	68358106	rs5792446	CTTTTA	C	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr11	68377602	rs7104877	A	C	4490.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:113,213:0.65:326
chr11	68382193	rs12941	C	T	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:78,151:0.66:229
chr11	68452985	rs694066	G	A	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:375,178:0.32:553
chr11	68458389	rs147122838	C	T	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:101,205:0.67:306
chr11	68483310	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.093;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr11	68530318	rs7112615	C	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	68548260	rs3019576	C	A	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	68549340	rs2228502	A	G	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	68562174	rs3019600	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr11	68566647	.	GAAA	G	386.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.586;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=13.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.372;SOR=3.015;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr11	68566648	.	A	AC	695	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=4;HapScore=1;MGOF=23;MMLQ=24;MQ=59.66;NF=7;NR=1;PP=695;QD=90.75;SC=CTTCATACGGAAAAATTTCAT;SbPval=0.98;Source=Platypus;TC=28;TCF=16;TCR=12;TR=8;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:20,8:0.29:28
chr11	68566649	.	AAA	GCT	662	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=4;HapScore=1;MGOF=23;MMLQ=24;MQ=59.72;NF=11;NR=1;PP=662;QD=60.4556562385;SC=TTCATACGGAAAAATTTCATC;SbPval=0.99;Source=Platypus;TC=47;TCF=32;TCR=15;TR=12;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	0/1:35,12:0.26:47
chr11	68566651	.	A	ACGCT	386.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.985;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=13.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.638;SOR=3.015;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr11	68566839	rs3019603	G	A	3717.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:9,167:0.95:176
chr11	68571309	rs146360664	GGA	G	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-0.778;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr11	68571384	rs147395530	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr11	68660080	.	G	C	159	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5024;HP=2;HapScore=2;MGOF=33;MMLQ=22;MQ=49.68;NF=9;NR=3;PP=159;QD=16.1476010456;SC=ACGCGCGGAGGGTGGAGGAGA;SbPval=0.6;Source=Platypus;TC=16;TCF=12;TCR=4;TR=12;WE=68660088;WS=68660070;set=Platypus	GT:AD:AF:DP	1/0:4,12:0.75:16
chr11	68660113	.	T	C	450	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=23;MQ=55.35;NF=18;NR=8;PP=450;QD=18.6450466364;SC=TGGGGTCACGTGCGGAGCGTG;SbPval=0.42;Source=Platypus;TC=33;TCF=24;TCR=9;TR=26;WE=68660121;WS=68660103;set=Platypus	GT:AD:AF:DP	1/0:7,26:0.79:33
chr11	68660160	.	C	T	784	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=27;MQ=57.99;NF=33;NR=14;PP=784;QD=17.4206640967;SC=ACGCGTGGAGCGTGGAGGAGA;SbPval=0.31;Source=Platypus;TC=68;TCF=51;TCR=17;TR=47;WE=68660168;WS=68660150;set=Platypus	GT:AD:AF:DP	0/1:21,47:0.69:68
chr11	68671277	rs186971044	A	G	6497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.806;QD=17.37;ReadPosRankSum=1.808;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:194,180:0.48:374
chr11	68671280	rs111612765	G	GCCGCCGCCATCTTC	6539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.521;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=17.72;ReadPosRankSum=4.704;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:196,173:0.47:369
chr11	68671419	rs4930624	C	T	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr11	68671477	rs1249463	T	C	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	68675930	rs10896378	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr11	68678962	rs560096	T	C	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	68682402	rs10896380	A	G	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr11	68701948	rs11228413	C	T	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	68703009	rs598255	C	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	68704028	rs2236654	C	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	68705527	rs3794031	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	68748003	rs34847539	T	C	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:131,267:0.67:398
chr11	68773403	rs11544722	G	A	2936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=2.151;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:346,177:0.34:523
chr11	68773740	rs60308539	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr11	68773810	rs57545280	AG	A	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr11	68777183	rs11228437	G	T	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:54,143:0.73:197
chr11	68777323	rs11544721	T	C	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr11	68816370	rs4930642	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:116,36:0.24:152
chr11	68822739	rs1470892	T	C	22479.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,876:1.00:876
chr11	68825037	rs3750973	A	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.389;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:79,31:0.28:110
chr11	68830226	rs10792015	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr11	68831293	rs11228472	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.029;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr11	68834968	rs6591368	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:118,55:0.32:173
chr11	68835182	rs10750840	T	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr11	68840014	rs3750963	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,50:0.31:160
chr11	68840397	rs1466221	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.228;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:109,46:0.30:155
chr11	68840397	.	TGG	CGA	1536	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=59.71;NF=18;NR=7;PP=1536;QD=63.5787149945;SC=TGCGTTCCTATGGCAGTGTTC;SbPval=0.66;Source=Platypus;TC=95;TCF=66;TCR=29;TR=25;WE=68840420;WS=68840387;set=Platypus	GT:AD:AF:DP	1/0:70,25:0.26:95
chr11	68840399	rs61746574	G	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.180;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:120,49:0.29:169
chr11	68840412	rs1466220	C	G	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:133,60:0.31:193
chr11	68840617	rs3750966	T	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr11	68845867	rs7945151	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.895;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.375;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr11	68846098	rs4930649	A	G	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:491,251:0.34:742
chr11	68846519	rs7124310	A	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:107,53:0.33:160
chr11	68847138	rs12804893	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	68849073	rs3829240	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr11	68851414	rs2376558	T	C	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.023;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:194,87:0.31:281
chr11	68851466	rs896973	G	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:151,72:0.32:223
chr11	68852660	rs2290420	C	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:117,228:0.66:345
chr11	68852674	rs140673036	C	A	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:253,138:0.35:391
chr11	68855233	rs1551305	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr11	69063136	rs7117236	C	T	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:85,212:0.71:297
chr11	69063393	rs7103126	T	C	6703.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:126,309:0.71:435
chr11	69063572	rs17856376	A	G	5927.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:167,282:0.63:449
chr11	69063984	rs73512137	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr11	69468020	.	G	C	3893.77	.	AC=1;AF=0.500;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	0/1:85,183:0.68:268
chr11	69468187	.	GT	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.293;QD=3.12;ReadPosRankSum=0.127;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr11	69469335	rs3212910	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	69472462	rs113873420	C	G	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:81,174:0.68:255
chr11	69488201	rs78436484	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr11	69489417	rs111794691	TCGGC	T	745.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr11	69489422	rs113966981	C	A	754.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr11	69489665	rs12279395	A	G	4898.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:120,228:0.66:348
chr11	69588645	rs191650713	G	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr11	69588729	rs2073464	G	A	15158.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr11	69589959	rs9666584	A	G	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	69625511	rs7932320	T	C	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,109:0.69:158
chr11	69630973	rs3926882	G	A	4253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.99;ReadPosRankSum=0.883;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:49,103:0.68:152
chr11	69630978	rs7483837	G	A	4375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=1.590;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:59,116:0.66:175
chr11	69633721	.	CGCG	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.000;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:39,5:0.11:44
chr11	69924352	rs11233117	C	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.885;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr11	69949135	rs55698329	GCC	G	1817.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr11	69949327	rs2509147	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr11	69949370	rs113704420	T	TAA	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.904;QD=11.42;ReadPosRankSum=0.491;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr11	69954412	rs2509182	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:155,73:0.32:228
chr11	69957917	rs9666157	A	G	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	69957940	rs2515251	C	A	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr11	69962432	rs9666084	A	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	69962642	rs2515245	A	G	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	69970412	rs2509160	G	A	9674.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:2,368:0.99:370
chr11	69970637	rs2515258	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	69978265	rs2509174	C	T	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:73,125:0.63:198
chr11	69978358	rs2515264	G	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr11	69995755	rs34756275	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.879;QD=0.74;ReadPosRankSum=1.546;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:74,26:0.26:100
chr11	69998440	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.17;ReadPosRankSum=0.512;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	70007537	rs12800044	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr11	70007865	rs2155461	A	C	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.30;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	70007865	.	AACCTC	CACCTC,CACCTT	728	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=37,26;NR=44,26;PP=135,728;QD=2.09594089564;SC=GCCTTTCCCCAACCTCGCTTC;SbPval=0.56;Source=Platypus;TC=81;TCF=37;TCR=44;TR=81,52;WE=70007878;WS=70007855;set=Platypus	GT:AF:DP	0/1:1.00:81
chr11	70007870	rs78838088	C	T	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.948;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:52,106:0.67:158
chr11	70049523	rs1131677	A	G	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	70118251	rs670012	T	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	70118489	rs546502	G	A	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=2.364;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:64,50:0.44:114
chr11	70118693	rs114219216	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	70171567	rs113854811	TAC	T	869.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr11	70171837	rs12280045	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	70172975	rs6592537	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr11	70179099	rs12294494	A	G	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:121,195:0.62:316
chr11	70179672	rs2282481	C	T	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	70181840	rs76351416	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr11	70185325	rs1061328	C	T	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:121,197:0.62:318
chr11	70189706	rs12274637	C	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr11	70191973	rs79753279	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr11	70191988	rs11235969	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr11	70192247	rs35455860	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr11	70194259	rs61887408	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:93,43:0.32:136
chr11	70194304	.	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	0/1:207,104:0.33:311
chr11	70200594	rs7943389	C	T	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	70208311	rs7130178	G	A	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	70208332	rs149404380	T	TA	5061.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:106,162:0.60:268
chr11	70208350	rs10751231	G	A	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	70211574	rs670310	A	G	10206.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	70213585	rs34887852	G	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr11	70218548	rs10466703	C	T	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=0.147;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:43,92:0.68:135
chr11	70218706	rs10466704	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr11	70222604	rs664130	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.641;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr11	70228053	rs199953025	CCACT	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr11	70229171	rs552282	G	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	70253389	rs2298396	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.514;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr11	70253475	rs2298397	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr11	70253586	rs569732	T	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr11	70260598	rs34053053	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:123,51:0.29:174
chr11	70260609	rs7932550	T	C	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:136,58:0.30:194
chr11	70266442	rs73518273	A	G	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:80,131:0.62:211
chr11	70268910	rs12802851	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	70275309	rs114597496	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr11	70279088	rs11825563	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr11	70279627	rs56009370	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr11	70279759	rs56162978	G	A	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:109,163:0.60:272
chr11	70281007	rs7131282	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	70282629	rs6894	A	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-0.854;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr11	70331687	.	C	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-2.392;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:241,103:0.30:344
chr11	70348846	.	AC	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=8.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.055;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	70348852	.	C	CG	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.80;ReadPosRankSum=0.050;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	70349061	rs7110158	A	G	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	70507605	rs72465113	TACAC	T,TAC	970.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=1.209;SOR=1.923;set=HC	GT:AD:AF:DP	1/2:2,23,14:0.59,0.36:39
chr11	70544921	rs11237214	G	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	70672399	rs3019835	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	70757620	rs4409861	T	C	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:92,198:0.68:290
chr11	70757705	rs4246962	C	T	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	70761002	.	TA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.745;QD=1.11;ReadPosRankSum=1.234;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr11	70766554	rs4077321	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.346;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr11	70766664	rs4495913	A	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	70777553	rs10899691	A	C	6069.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:192,295:0.61:487
chr11	70777566	rs12287441	A	G	5577.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:172,264:0.61:436
chr11	70777723	rs10793403	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:34,101:0.75:135
chr11	70789000	rs11238042	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:131,61:0.32:192
chr11	70794485	rs67223333	C	G	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:95,145:0.60:240
chr11	70798895	rs35132270	CG	C	2552.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:123,71:0.37:194
chr11	70798902	rs34650500	G	T	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:131,74:0.36:205
chr11	70798924	rs139112112	AACTCGCC	A	5585.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:110,143:0.57:253
chr11	70829858	rs3924047	T	C	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	70829890	rs148065633	G	T	5225.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:132,238:0.64:370
chr11	71146063	rs78575838	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr11	71146229	rs115338563	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:73,108:0.60:181
chr11	71146577	rs909217	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:148,63:0.30:211
chr11	71146691	rs760241	A	G	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	71146952	rs1792268	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:85,51:0.38:136
chr11	71149069	rs949176	A	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	71150158	rs74742701	A	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=0.543;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:18,50:0.74:68
chr11	71150190	rs28364773	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr11	71152461	rs949177	A	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	71153459	rs11603330	C	A	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.072;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:303,128:0.30:431
chr11	71155005	rs76865413	G	T	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr11	71155153	rs1790334	A	G	15291.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:1,603:1.00:604
chr11	71155171	rs1044482	C	T	15591.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr11	71155778	rs112621523	CA	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.717;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr11	71155974	rs115595829	T	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:92,153:0.62:245
chr11	71164471	rs12789751	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr11	71164544	rs12791871	A	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	71166060	rs2276359	T	TG	3074.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	71166337	rs1790373	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	71169547	rs2276360	G	C	8786.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	71169648	rs2276361	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr11	71174452	rs2276362	A	G	13305.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr11	71174589	rs1629304	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	71183474	rs2282621	C	T	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.807;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:131,56:0.30:187
chr11	71183477	rs2282620	C	T	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=1.838;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:130,57:0.30:187
chr11	71183645	rs2282619	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	71184190	rs7935125	C	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:97,63:0.39:160
chr11	71184678	rs7950441	A	C	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	71185479	rs2276354	T	C	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr11	71185518	rs2186778	T	C	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:408,173:0.30:581
chr11	71188502	rs3794065	G	A	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr11	71189436	rs2276353	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	71192602	rs3814731	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	71192851	rs3814734	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	71203044	rs35072948	AC	A	1501.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr11	71203046	rs201446713	A	ACTGT	1501.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr11	71208537	rs35007971	G	A	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:66,180:0.73:246
chr11	71209688	rs114717844	G	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr11	71232231	rs115345840	C	T	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:120,222:0.65:342
chr11	71238890	rs12271894	C	T	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:117,232:0.66:349
chr11	71259822	rs10792769	A	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:139,52:0.27:191
chr11	71260243	rs2664	T	C	14988.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:2,593:1.00:595
chr11	71260296	rs2663	G	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:59,121:0.67:180
chr11	71260348	rs2665	T	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr11	71276909	.	G	A	440	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=5;HapScore=2;MGOF=53;MMLQ=21;MQ=55.99;NF=23;NR=10;PP=440;QD=14.3870064408;SC=GCTCCAAGGGGGGCTGTGGCT;SbPval=0.97;Source=Platypus;TC=93;TCF=47;TCR=46;TR=33;WE=71276917;WS=71276899;set=Platypus	GT:AD:AF:DP	1/0:60,33:0.35:93
chr11	71276909	.	G	GGGCTGTGGCTCCTGTGGGGGCTCCAAGGGA	2788.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.104;MLEAC=2;MLEAF=1.000;MQ=58.47;MQRankSum=2.925;QD=59.33;ReadPosRankSum=1.050;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr11	71279877	.	GGTCCAGCTGCTGCAAGCCCTGCTGCTCCCA	G	5006.73	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:176,239:0.58:415
chr11	71280031	rs111626347	C	A	2329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=2.150;QD=15.43;ReadPosRankSum=-1.449;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:44,107:0.71:151
chr11	71498591	rs12270466	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.504;QD=1.45;ReadPosRankSum=1.404;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:21,3:0.12:24
chr11	71498601	rs12283300	G	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.586;QD=3.38;ReadPosRankSum=0.457;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	71498648	rs12277291	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.921;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	71498671	rs12283346	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	71498694	rs11234942	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	71507205	rs57679800	C	T	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:93,202:0.68:295
chr11	71576817	rs57369261	G	GT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.053;QD=0.46;ReadPosRankSum=0.263;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:166,36:0.18:202
chr11	71634606	.	G	GTT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=17.32;ReadPosRankSum=0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr11	71668362	rs3216157	CT	C	2808.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	71701523	rs2276384	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	71707465	rs1055452	T	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	71712175	rs1892919	G	A	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr11	71714526	rs949324	G	C	12539.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.27;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	71714526	.	GGT	CGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=20;MMLQ=23;MQ=59.93;NF=90;NR=65;PP=2947;QD=20;SC=GACCAGGTGAGGTCAGCATCG;SbPval=0.54;Source=Platypus;TC=160;TCF=93;TCR=67;TR=155;WE=71714536;WS=71714516;set=Platypus	GT:AD:AF:DP	1/1:5,155:0.97:160
chr11	71714528	rs949323	T	G	12539.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	71715215	rs2845857	C	G	20353.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr11	71715218	rs2852365	T	C	20371.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr11	71719619	rs2155145	G	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	71726212	rs3750912	C	T	4987.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:138,221:0.62:359
chr11	71727422	rs1057992	A	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	71728543	rs34393610	G	GA	1376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.919;QD=14.80;ReadPosRankSum=0.600;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:18,75:0.81:93
chr11	71728908	rs11278712	AGTCAAC	A	2555.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	71729656	rs949325	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	71730715	rs2298456	T	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	71733519	rs10128658	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	71734211	rs2298457	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	71740378	rs35948003	A	AAC	7669.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	71740521	rs1939247	A	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	71797422	rs597513	T	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:303,125:0.29:428
chr11	71804513	rs2250866	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	71805732	rs34329029	T	TGA	1856.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr11	71809500	rs510925	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr11	71816092	rs12293885	T	A	5150.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:116,242:0.68:358
chr11	71816219	rs12272213	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr11	71819007	rs76657474	G	C	9277.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:192,436:0.69:628
chr11	71819979	.	G	C	2770.77	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:75,127:0.63:202
chr11	71821236	rs17161980	A	G	3987.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:96,196:0.67:292
chr11	71822165	rs144948522	G	GTGCTGGGGTCTCTGTCTA	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	71822401	rs3750908	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr11	71847115	rs377615092	C	T	5854.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:171,277:0.62:448
chr11	71849741	rs652197	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr11	71883540	rs633738	G	A	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	71928056	.	C	CTGTATTGTATTGTATTGTAT	962.73	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr11	71929526	rs651646	T	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	71932120	rs2508202	G	C	16706.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:8,663:0.99:671
chr11	71932414	rs2298444	T	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,83:0.61:136
chr11	71941212	rs2276048	A	G	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:74,159:0.68:233
chr11	71941381	rs2276047	A	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr11	71941812	rs12361913	C	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr11	71943147	rs146597807	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr11	71945332	rs61736312	A	G	5402.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:110,265:0.71:375
chr11	71946087	rs3216093	AG	A	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr11	71946333	rs2276046	T	C	6759.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:181,315:0.64:496
chr11	71948536	rs11548491	C	G	10258.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:265,481:0.64:746
chr11	71951159	rs200556921	GGCGCCCGCC	G	3835.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:67,97:0.59:164
chr11	72018146	.	T	C	886.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr11	72281818	rs380126	A	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:185,80:0.30:265
chr11	72281884	rs433640	C	T	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:340,172:0.34:512
chr11	72282039	rs409512	T	C	32540.77	.	AC=2;AF=1.00;AN=2;DB;DP=1275;set=Intersection	GT:AD:AF:DP	1/1:2,1258:1.00:1260
chr11	72287615	rs1056864	G	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:36,76:0.68:112
chr11	72289176	rs379276	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr11	72289291	rs1135029	T	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:182,87:0.32:269
chr11	72290199	rs11605051	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-1.272;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr11	72291477	rs56350365	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr11	72291883	rs644698	C	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	72291927	rs577536	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr11	72292167	rs3781939	G	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.554;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	72292176	rs7108477	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.163;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	72292185	rs3781938	C	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.12;ReadPosRankSum=-0.491;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	72292353	rs57803658	G	GA	1384.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr11	72292860	rs376724	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.857;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr11	72293039	rs379638	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr11	72293079	rs414178	A	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.554;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr11	72293602	rs4944557	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr11	72294714	rs408269	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.812;QD=4.98;ReadPosRankSum=-0.552;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	72294734	rs56267207	A	AC	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr11	72295502	rs366711	T	C	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:351,166:0.32:517
chr11	72295906	rs452228	A	G	3718.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:408,217:0.35:625
chr11	72296039	rs907850	G	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:137,76:0.36:213
chr11	72296700	rs424234	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr11	72302191	rs429075	C	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr11	72307520	.	T	TCACACACA	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.000;QD=8.87;ReadPosRankSum=3.346;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:50,32:0.39:82
chr11	72307522	rs149480349	T	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.972;QD=17.43;ReadPosRankSum=5.472;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr11	72307524	rs186092662	T	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.986;QD=17.19;ReadPosRankSum=5.582;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr11	72307526	.	T	A	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.972;QD=17.98;ReadPosRankSum=5.484;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr11	72307528	rs57087192	T	A	3241.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.549;QD=31.17;ReadPosRankSum=5.049;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:19,85:0.82:104
chr11	72308511	rs142826924	TCCCTGC	T	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr11	72316148	rs78279319	C	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,32:0.32:101
chr11	72326210	rs572421	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	72353228	rs145571186	G	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr11	72353879	rs191815140	G	C	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=1.209;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:36,63:0.64:99
chr11	72354028	rs907853	C	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:130,72:0.36:202
chr11	72361883	rs341038	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr11	72361893	rs72349218	TCCCTGAC	T	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	72361920	.	TACACACACAC	T	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=1.248;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr11	72363759	rs12146545	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:168,86:0.34:254
chr11	72366929	rs907858	C	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:65,44:0.40:109
chr11	72367096	rs113173328	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr11	72367102	rs907857	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr11	72368986	rs3781916	T	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:89,51:0.36:140
chr11	72396800	rs12802369	A	G	7642.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	72396990	rs12805218	G	A	6848.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	72399607	rs2306609	G	A	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	72404003	rs11235567	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	72404958	rs12276972	A	C	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	72405868	rs2306608	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr11	72407770	rs2306612	G	C	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.013;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:86,29:0.25:115
chr11	72407977	rs11602233	C	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr11	72408657	rs2291289	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:358,124:0.26:482
chr11	72411082	rs7110501	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:140,64:0.31:204
chr11	72411099	rs10898866	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:143,68:0.32:211
chr11	72412675	rs11235574	A	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr11	72413839	rs115640987	A	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr11	72414189	rs3765105	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr11	72421059	rs113423461	G	A	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,95:0.65:146
chr11	72528973	rs891655	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	72532569	rs1864651	G	T	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	72532621	rs1864652	T	G	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	72532708	rs11235603	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	72533711	rs4944806	A	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	72536272	rs2303969	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	72537072	rs3765638	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.388;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr11	72538141	rs3862793	T	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	72540225	rs891657	G	T	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	72598704	rs7129851	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	72788823	rs6592510	C	T	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	72794602	rs200056109	G	GA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.003;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr11	72945341	rs2511241	C	T	12493.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr11	72946020	rs1783596	C	T	25749.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,989:1.00:989
chr11	72946140	rs3741156	G	C	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:405,209:0.34:614
chr11	72946279	rs74472890	T	C	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:344,156:0.31:500
chr11	73020375	rs139105330	G	GCTC	3413.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr11	73020633	rs78465712	G	C	5652.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:177,272:0.61:449
chr11	73021084	rs3741149	C	T	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:135,244:0.64:379
chr11	73022723	rs140374939	C	T	9853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-2.638;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:251,458:0.65:709
chr11	73071675	rs144411376	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,79:0.66:119
chr11	73072965	rs10553377	CCACA	C	1910.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr11	73100232	rs11826896	C	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	73100320	rs11826909	C	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	73100455	rs58062099	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.48;ReadPosRankSum=-1.611;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr11	73104842	rs142455990	T	TC	6155.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:158,234:0.60:392
chr11	73106088	rs28641751	C	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	73106186	rs34304845	G	A	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:107,184:0.63:291
chr11	73106294	rs17851510	A	C	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr11	73106408	rs7112924	C	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=1.107;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:29,65:0.69:94
chr11	73106690	rs7101831	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	73120653	rs10793060	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	73122340	rs1938777	A	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr11	73141627	rs11823913	C	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	73179426	rs1939383	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr11	73179673	rs79351814	C	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	73362398	rs35759196	C	CA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.919;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr11	73362766	rs670811	C	T	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,133:0.64:208
chr11	73364368	rs6592527	C	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr11	73364629	rs7942217	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	73364673	rs7952228	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	73366697	rs2008734	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:26,74:0.74:100
chr11	73371842	rs147173613	C	G	5587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=1037;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=1.462;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:685,339:0.33:1024
chr11	73390505	rs73538640	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	73441743	rs72976849	T	A	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.608;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr11	73441772	rs2037709	A	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	73441913	rs72976851	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.950;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	73471036	rs72976884	C	T	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.075;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:281,143:0.34:424
chr11	73498933	rs1792174	T	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	73499066	.	C	CGGGGAGATGGCGGACGGTGCAGAGA	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=4.996;QD=3.42;ReadPosRankSum=-1.530;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr11	73528717	rs1670564	G	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	73584581	rs59752835	GTT	GT,G	144.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:12
chr11	73587997	rs2010583	G	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr11	73588240	rs1122373	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr11	73600072	rs57462976	C	G	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:63,116:0.65:179
chr11	73610110	rs1670558	A	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr11	73669310	rs10793068	C	A	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	73669334	rs10793069	A	C	11577.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr11	73670645	rs653263	T	C	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	73670793	rs112136608	TTATTA	T	2193.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=61.50;MQRankSum=4.051;QD=13.71;ReadPosRankSum=1.916;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:59,101:0.63:160
chr11	73670795	rs148856834	ATTATT	A	492.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.500;MQ=61.52;MQRankSum=-3.205;QD=3.60;ReadPosRankSum=1.881;SOR=1.303;set=HC	GT:AD:AF:DP	0/1:101,36:0.26:137
chr11	73675810	rs370470804	CTGTGTGTG	C,CTG	71.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=9;set=Intersection	GT:AF:DP	0/1:0.43:7
chr11	73676157	rs147999002	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	73686859	rs10535527	ACTT	A	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.26;ReadPosRankSum=-0.739;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr11	73715134	rs1726743	C	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	73715542	rs2075577	G	A	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	73715666	rs2734828	G	A	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	73717024	rs1726747	AT	TC	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	73745147	rs826071	A	G	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:76,195:0.72:271
chr11	73745395	rs17132610	T	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr11	73745544	rs1055178	G	A	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-2.468;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:60,81:0.57:141
chr11	73748179	rs17132620	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	73759456	rs73557906	G	A	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr11	73760413	rs111594125	G	T	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:63,157:0.71:220
chr11	73765787	rs113342391	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr11	73765812	rs112206980	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr11	73785326	rs4453265	T	C	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-2.685;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:110,56:0.34:166
chr11	73789145	rs113192756	A	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr11	73789332	rs75137555	C	T	4226.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:125,200:0.62:325
chr11	73789777	rs1726735	T	G	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	73789877	rs1790393	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	73795786	rs77296997	A	T	515.81	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr11	73796608	rs1095424	T	C	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	73796827	rs115668737	C	T	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:93,178:0.66:271
chr11	73796917	rs826058	C	T	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr11	73803398	rs1790400	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.048;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr11	73820258	rs17132721	C	T	7241.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:183,345:0.65:528
chr11	73824704	rs12291090	G	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.141;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr11	73833957	rs145193996	C	CTGTCTGGCAAGTGA	354.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	73844434	rs61901246	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr11	73881580	rs3814724	T	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	73882260	rs1726746	T	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:9,221:0.96:230
chr11	73999993	rs58730111	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.674;QD=2.12;ReadPosRankSum=0.216;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr11	74000180	.	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.780;QD=1.03;ReadPosRankSum=-0.167;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr11	74022429	rs7944333	C	T	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:244,122:0.33:366
chr11	74053547	rs592644	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr11	74053623	rs144486313	T	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr11	74054175	rs75415490	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	74054548	rs78840593	T	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:46,98:0.68:144
chr11	74056722	rs201538815	A	G	4062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.236;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:122,201:0.62:323
chr11	74062352	rs76196117	T	C	72.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.56;ReadPosRankSum=-0.253;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	74082704	rs78882543	A	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,78:0.60:129
chr11	74085420	rs35170680	T	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr11	74085522	.	G	A	2066.77	.	AC=1;AF=0.500;AN=2;DP=316;set=Intersection	GT:AD:AF:DP	0/1:194,119:0.38:313
chr11	74109342	rs904155	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	74204198	rs10736797	G	A	9136.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.874;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=3.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=1.467;SOR=0.111;set=HC	GT:AD:AF:DP	1/1:2,365:0.99:367
chr11	74204269	rs10736798	T	G	3747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=8.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.391;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:151,183:0.55:334
chr11	74204727	rs4944895	A	G	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=1.165;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:77,69:0.47:146
chr11	74207856	rs643738	G	A	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.782;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:84,135:0.62:219
chr11	74208442	rs79311985	A	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-6.283;QD=0.76;ReadPosRankSum=2.477;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:47,5:0.10:52
chr11	74208449	rs76857078	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-6.089;QD=1.02;ReadPosRankSum=2.363;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr11	74208457	rs76230330	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-5.463;QD=1.54;ReadPosRankSum=2.005;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:35,5:0.12:40
chr11	74208458	rs77578021	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-5.536;QD=1.58;ReadPosRankSum=2.013;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr11	74208466	rs78372881	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-5.001;QD=2.43;ReadPosRankSum=1.338;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr11	74208475	.	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-4.837;QD=3.06;ReadPosRankSum=1.143;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr11	74208478	.	A	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-4.837;QD=3.15;ReadPosRankSum=1.091;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr11	74303841	rs2298572	T	C	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.47;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	74303841	.	TCTGTCTGCT	CCTGTCTGCC,CCTGTCTGCT	1073	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=9,36;NR=14,65;PP=204,1073;QD=11.1942554288;SC=GCCTTGACCCTCTGTCTGCTT;SbPval=0.45;Source=Platypus;TC=102;TCF=36;TCR=66;TR=23,101;WE=74303858;WS=74303831;set=Platypus	GT:AF:DP	0/1:0.23:102
chr11	74303850	rs2298573	T	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.980;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:80,39:0.33:119
chr11	74329615	rs4944052	T	C	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	74330888	rs11236172	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	74330980	rs10501417	A	G	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	74345823	rs11236181	T	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr11	74347434	rs4944920	G	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	74379809	rs56330626	G	GT	2046.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:41,107:0.72:148
chr11	74408384	rs10751240	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	74408619	rs3741124	C	G	21467.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	1/1:0,828:1.00:828
chr11	74408633	rs3741123	A	G	21948.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr11	74413872	rs34528207	A	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.509;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:93,48:0.34:141
chr11	74414099	rs115964754	A	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.711;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr11	74417664	rs12184431	T	C	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.082;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:143,64:0.31:207
chr11	74419357	rs1944937	C	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	74441796	rs11236234	T	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr11	74460517	rs111614451	T	TA	282.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	74546682	rs79540209	T	C	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:126,287:0.69:413
chr11	74546905	rs1125609	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:150,66:0.31:216
chr11	74555056	rs3814726	C	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr11	74555378	rs75226304	C	G	342.41	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr11	74559623	rs571437	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr11	74562088	rs77670244	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr11	74641436	.	GA	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.321;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr11	74645032	rs140602440	G	GTTCA	981.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr11	74645083	rs79991038	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr11	74660504	rs1282689	A	C	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:110,197:0.64:307
chr11	74674612	rs71848982	GTTTA	G	708.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr11	74676794	rs514534	G	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr11	74700896	rs681566	A	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr11	74705696	rs544115	T	C	14400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=1.038;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:347,676:0.66:1023
chr11	74862391	rs1944612	A	G	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	74876665	rs56235686	G	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	74877004	rs3740839	G	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	74880856	rs7125268	C	A	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	74904362	rs1621378	T	C	13979.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr11	74907582	rs2306168	C	T	7759.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:178,362:0.67:540
chr11	74980351	rs35615112	C	G	436.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	74982922	rs36004313	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr11	74982939	rs2276310	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr11	74992267	rs746168	A	C	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	74995350	rs647630	C	T	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:199,101:0.34:300
chr11	75017436	rs536852	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.098;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr11	75023093	rs546812	A	G	19146.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr11	75141630	rs11236430	T	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	75141762	rs3018101	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr11	75150280	rs61897371	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr11	75152243	rs571353	C	T	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	75154067	rs532454	C	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	75155743	rs479574	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	75160213	rs473462	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.791;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr11	75160575	rs518611	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:257,122:0.32:379
chr11	75167704	rs1793410	T	C	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.658;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:308,141:0.31:449
chr11	75188569	rs1790149	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-1.048;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:129,41:0.24:170
chr11	75277628	rs584961	A	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	75277992	rs651581	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:269,138:0.34:407
chr11	75278040	rs35462148	G	GTCC	1864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=9.373;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.654;QD=8.84;ReadPosRankSum=-0.979;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:154,57:0.27:211
chr11	75378674	rs12225010	A	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	75439126	rs34582952	C	A	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:72,137:0.66:209
chr11	75439438	rs2371370	T	C	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=1.182;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr11	75439441	rs3862806	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=1.144;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr11	75442159	rs75505946	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr11	75495520	rs114869066	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr11	75501852	rs2510635	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	75511572	rs3060	T	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:69,150:0.68:219
chr11	75526481	rs7118567	CC	AG	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chr11	75902539	rs11236648	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr11	75902571	rs2508779	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	75917189	rs1717626	G	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr11	75917334	rs1879633	T	C	14187.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.017;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=1.852;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:2,576:1.00:578
chr11	76183924	rs4245443	A	G	519.79	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr11	76207633	rs10899226	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	76207709	rs72930511	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr11	76227182	rs2508740	G	A	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:94,172:0.65:266
chr11	76237725	rs11363199	CA	C	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr11	76257215	rs3753051	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:195,96:0.33:291
chr11	76370792	rs4304809	A	G	9743.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	76372052	rs3740779	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:241,121:0.33:362
chr11	76372418	rs3740778	T	C	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	76372564	rs10751259	T	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr11	76393990	rs2155850	T	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:72,135:0.65:207
chr11	76406341	rs10751260	G	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	76418737	rs2120898	A	G	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:79,176:0.69:255
chr11	76427731	rs10751261	T	C	14912.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr11	76429160	rs10899266	T	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	76430529	rs7122287	C	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=26.16;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	76430884	rs199893617	CG	C	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-1.199;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr11	76506738	rs7945821	C	T	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:297,155:0.34:452
chr11	76506888	rs11546727	G	A	11102.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:230,498:0.68:728
chr11	76507692	rs1149621	T	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	76572165	rs6592674	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:80,40:0.33:120
chr11	76579429	.	CTCTCTCTG	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=11.181;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.524;QD=8.27;ReadPosRankSum=-0.601;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	76637651	rs4379869	G	A	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.091;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:190,74:0.28:264
chr11	76687399	rs1517909	A	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-2.712;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr11	76687448	rs1517908	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.000;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	76701365	rs3824889	G	T	35.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr11	76705180	rs56841188	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.842;QD=3.16;ReadPosRankSum=1.547;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr11	76727866	rs112678860	GT	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:19,115:0.86:134
chr11	76731525	rs6592695	A	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	76751166	rs73493606	G	A	18951.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,725:1.00:725
chr11	76751541	rs11292198	CT	C	25561.73	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr11	76751584	rs11292199	CT	C	28599.73	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr11	76751603	rs11292200	CT	C	27381.73	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr11	76796022	rs34236021	C	A	4539.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:134,211:0.61:345
chr11	76799004	rs7121748	T	C	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	76804663	rs76140604	T	C	6069.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:196,294:0.60:490
chr11	76814268	rs112948638	G	A	6261.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:135,289:0.68:424
chr11	76814471	rs2233551	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr11	76827223	rs11606456	G	C	2022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.442;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:183,109:0.37:292
chr11	76827360	rs11604536	A	G	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:188,92:0.33:280
chr11	76832011	rs2276031	C	T	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:134,83:0.38:217
chr11	76832812	rs3819077	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:90,43:0.32:133
chr11	76833200	rs2276030	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	76833763	rs59430193	G	C	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.464;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr11	76834616	rs875874	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,60:0.43:139
chr11	76834702	rs115503200	C	T	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:216,338:0.61:554
chr11	76834712	rs875875	A	G	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:372,231:0.38:603
chr11	76853783	rs1052030	T	C	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	76854001	rs3740760	C	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	76858756	rs12279716	C	T	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	76868114	.	C	A	650.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr11	76868372	rs762667	T	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	76870634	rs4944145	T	C	6031.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:123,275:0.69:398
chr11	76874114	rs147468060	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:172,70:0.29:242
chr11	76874149	rs111580784	C	CAT	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr11	76876976	rs11374303	G	GT	748.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	76886541	rs112571133	T	TG	5275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.111;QD=15.84;ReadPosRankSum=0.985;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:124,209:0.63:333
chr11	76888643	rs36090425	G	A	2562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.058;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:457,174:0.28:631
chr11	76890242	rs10793239	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr11	76890257	rs111816666	C	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr11	76891308	rs3831388	T	TCTGCCAAATTATTTGG	1921.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr11	76891661	rs1109162	A	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	76892943	rs7117606	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	76893280	rs57741157	A	AG	2043.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	76893401	rs2276287	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=26.23;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	76893434	rs149931272	C	CCGCTCTGGCCTCTGACATGTG	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	76894235	rs948972	G	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	76895770	rs143953991	GGGAGGCGGGGACACCAGGGCCT	G	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.818;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.940;QD=5.30;ReadPosRankSum=0.168;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:197,46:0.19:243
chr11	76901273	rs2276286	C	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	76901623	rs55637648	T	TGCTGGGGCCTGGAGC	2079.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr11	76901648	rs7947922	C	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr11	76902002	rs75781644	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr11	76904945	rs10899359	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	76905604	rs1109977	G	T	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	76905725	rs948958	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	76908650	rs372493678	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.272;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr11	76912406	rs12292189	A	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,45:0.35:127
chr11	76912636	rs2276288	A	T	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	76914357	rs116033778	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	76916424	rs11237121	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	76916704	rs114864629	C	T	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	76917220	rs2276293	A	G	17310.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr11	76917402	rs144403460	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr11	76918322	rs2276291	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	76918497	rs2276290	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	76919468	rs1320703	A	T	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	76919478	rs948962	C	A	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	76919619	rs948961	G	A	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	76919629	rs948960	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	76919865	rs1320702	T	A	10906.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	76919978	rs111416657	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	76920003	rs11237122	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	76922946	rs11237123	G	A	5061.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:99,232:0.70:331
chr11	76923017	rs3819170	G	A	5203.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:104,234:0.69:338
chr11	76923188	rs73497658	C	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:146,71:0.33:217
chr11	76923352	rs12418037	A	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr11	76924130	rs2276289	A	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr11	76924874	rs883223	G	A	10056.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:226,472:0.68:698
chr11	76925075	rs948959	G	T	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	76928149	rs2282576	A	G	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	76928438	rs73497674	C	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.81;ReadPosRankSum=-0.586;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr11	76944015	rs4945161	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,56:0.58:97
chr11	76944049	rs4945162	C	T	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:73,89:0.55:162
chr11	76954898	rs7104577	A	G	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:61,187:0.75:248
chr11	76979465	rs1618188	A	C	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:2,376:0.99:378
chr11	76979550	rs2729772	T	C	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:254,161:0.39:415
chr11	76979889	rs1621624	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	76979900	rs1613357	C	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	76980743	rs1620915	T	C	2490.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	76987186	rs73499559	T	C	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.968;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:179,78:0.30:257
chr11	77051820	rs51500	C	T	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:101,188:0.65:289
chr11	77060169	rs34167967	C	CA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.194;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr11	77064501	rs201854503	C	CA	2337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.724;QD=11.40;ReadPosRankSum=3.336;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:73,132:0.64:205
chr11	77090211	rs562939	T	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	77335982	rs2013296	C	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	77389020	rs12286317	T	C	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:50,108:0.68:158
chr11	77389238	.	CTTT	C,CT	626.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.689;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.88;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.581;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:4,13,16:0.39,0.48:33
chr11	77394600	rs7925289	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=0.079;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	77531733	rs377183033	C	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr11	77531810	rs10751277	T	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	77587973	rs616354	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	77605501	rs1793336	T	C	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	77614770	rs2276349	T	G	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	77629132	rs60400274	A	AT	4264.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	77671281	rs12796422	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	77672189	rs11370501	T	TA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.109;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr11	77690119	rs61736152	C	T	5744.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:136,273:0.67:409
chr11	77692785	.	TTTTA	T	222	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=36;MMLQ=27;MQ=58.4;NF=0;NR=6;PP=222;QD=38.0;SC=GACAGCTTTCTTTTATTTATT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6;WE=77692796;WS=77692775;set=Platypus	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	77698524	rs7938133	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	77698651	rs6592756	T	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr11	77702033	rs2276441	T	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	77705536	rs2016147	C	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:61,84:0.58:145
chr11	77728285	rs61742053	C	T	4135.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:100,194:0.66:294
chr11	77734209	rs11237362	T	C	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:365,188:0.34:553
chr11	77775466	rs545869	C	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	77790653	rs534418	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	77790863	rs499799	C	G	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	77811990	rs1263505	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	77813941	rs640016	T	C	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	77817727	rs3831385	C	CATCT	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	77820670	rs1783515	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.51;ReadPosRankSum=-1.209;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr11	77820673	rs1789032	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.06;ReadPosRankSum=-0.140;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr11	77824907	rs10676978	G	GAAAA	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-1.707;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr11	77825064	rs572693	A	G	5036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=2.432;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:125,246:0.66:371
chr11	77825508	rs678277	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr11	77825642	rs653721	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	77825697	rs653368	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	77825760	rs145685301	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr11	77832076	rs518624	T	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	77832333	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.362;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	77834994	rs498278	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	77838373	rs59662312	TA	T	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.843;QD=8.78;ReadPosRankSum=-0.347;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr11	77884782	rs230661	C	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	77911715	rs73507220	C	G	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	77911957	rs73507222	T	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	77920457	rs2256051	G	A	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	77920822	rs73507299	C	G	7894.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:180,364:0.67:544
chr11	77920930	rs2511188	A	G	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	77921451	rs112932065	G	T	3777.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:318,202:0.39:520
chr11	77921527	rs2512526	G	C	14696.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr11	77924544	rs2450139	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	77924567	rs115504608	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	77924578	rs142916169	TG	T	794.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr11	77924739	rs372488948	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.453;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:184,66:0.26:250
chr11	77930345	rs2450122	T	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:125,52:0.29:177
chr11	77932572	.	T	G	51.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr11	77936166	rs1385600	A	G	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:115,55:0.32:170
chr11	78154810	.	G	GA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.227;QD=0.99;ReadPosRankSum=-0.561;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr11	78204073	rs66546995	CACAGAT	C	2472.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	78204299	rs56279811	T	TA	1145.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	78204380	rs4474465	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	78277277	rs10751296	A	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	78279744	rs60510975	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.401;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr11	78279790	rs10501429	T	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	78380739	rs61747204	G	A	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:255,137:0.35:392
chr11	78387170	rs149745986	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,53:0.77:69
chr11	78387356	rs59660398	C	T	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	78399121	rs1792148	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,38:0.31:123
chr11	78434106	rs143624119	A	AC	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	78437352	rs597327	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr11	78440736	rs512004	G	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr11	78443235	rs1790557	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=-2.057;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	78498022	rs11237621	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:203,92:0.31:295
chr11	78516320	.	T	TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC	4408.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.89;QD=169.57;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	78567367	rs505093	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=7.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=0.576;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	78776192	rs7130258	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	79133220	rs11237828	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	79133292	rs36083983	TAC	T	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.48;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	82443417	rs3780	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr11	82443672	rs6592081	C	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,100:0.62:160
chr11	82444254	.	C	T	2390.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:35,110:0.76:145
chr11	82550387	rs4843	A	G	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr11	82560312	rs10792653	T	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	82560858	rs10736757	A	G	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	82561151	rs33954574	G	GAA	127.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.253;QD=25.57;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	82561158	rs373807833	T	A	136.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.253;QD=27.38;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	82561339	rs13306597	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr11	82561661	rs10792655	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	82564152	rs2298669	A	G	388.96	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	82564357	rs17144337	A	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:19,59:0.76:78
chr11	82570926	rs12290925	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr11	82595975	rs6592087	T	A	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	82611228	rs7939178	G	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,112:0.67:168
chr11	82611962	rs12282547	G	C	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr11	82641001	rs2127363	C	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	82641157	rs2170009	A	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr11	82641364	rs10431162	G	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr11	82644764	rs11826199	C	G	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr11	82644904	rs7130899	G	A	4886.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:133,235:0.64:368
chr11	82752734	rs34023989	TA	T	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=1.059;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr11	82874970	rs10898088	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr11	82875359	rs7130527	G	A	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.251;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:170,66:0.28:236
chr11	82878393	rs17144692	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr11	82880341	rs12284052	G	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:149,56:0.27:205
chr11	82892837	rs138976866	TAC	T	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	82895657	rs17144746	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	82905679	rs11233519	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:160,75:0.32:235
chr11	82952108	rs625102	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	82968164	rs628223	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	82968418	rs657824	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	82972770	.	TCA	T	39	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=39;QD=27.0;SC=ACACCTGCACTCACACACACA;SbPval=1.0;Source=Platypus;TC=16;TCF=12;TCR=4;TR=2;WE=82972779;WS=82972760;set=Platypus	GT:AD:AF:DP	1/0:14,2:0.12:16
chr11	82973045	rs645954	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	82984985	rs543562	T	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	82996986	rs494791	A	C	14578.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr11	83170837	rs73518754	G	A	2128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=0.053;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:56,103:0.65:159
chr11	83180169	rs11464149	C	CA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.265;QD=1.51;ReadPosRankSum=-2.205;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr11	83585289	rs144508115	G	GGGAAGGAAGGAAGGAGAGAGGGAA	575.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.57;MQRankSum=0.524;QD=57.59;ReadPosRankSum=1.645;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	83585584	rs75948804	TA	AT	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.971;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.171;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	83641608	rs66861805	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr11	83810113	rs3750917	T	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	83878075	rs1869472	G	A	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr11	83962251	rs7933566	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	84027768	rs1515083	C	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.241;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr11	84822798	rs601375	T	G	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-1.944;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr11	85342959	.	T	C	29	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=29;QD=31.8856062736;SC=TTATCTAAGATCCTATTCTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=85342967;WS=85342949;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr11	85366516	rs17148306	C	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr11	85366762	rs2196168	A	G	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:53,129:0.71:182
chr11	85374993	rs1192	C	T	6981.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:148,306:0.67:454
chr11	85432040	.	CA	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.825;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr11	85436699	rs598346	A	G	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:120,216:0.64:336
chr11	85448482	rs17744227	A	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr11	85627039	rs3213934	A	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.665;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr11	85630411	rs12805520	C	T	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.375;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:190,75:0.28:265
chr11	85671702	rs618679	A	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	85685285	rs17817648	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr11	85692181	rs76719109	A	C	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	85692342	rs2508688	A	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	85714288	rs7951988	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	85725937	rs592297	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	85737129	rs545213	T	C	86.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.49;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr11	85737502	rs541674	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr11	85966177	rs7950735	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.397;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr11	85968623	rs974144	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr11	85975481	rs35685239	A	ATATT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-1.465;QD=10.96;ReadPosRankSum=-0.444;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr11	85979636	rs72285136	CGT	C	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.018;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr11	86017658	rs291247	A	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr11	86037696	rs12295985	T	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	86037733	rs11419370	G	GC	124	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	86098680	rs292109	T	C	2903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.795;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.527;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:1,114:0.99:115
chr11	86119396	rs4412777	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	86123556	rs3741005	A	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:263,104:0.28:367
chr11	86133784	rs1056194	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=5.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.842;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:166,51:0.24:217
chr11	86157998	rs4944580	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr11	86161147	rs4944581	A	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr11	86173565	rs601646	C	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	86175300	rs605251	G	A	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	86198335	rs669325	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	86208897	rs609848	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	86267633	rs17211115	C	T	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.789;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:187,93:0.33:280
chr11	86267714	rs12287767	C	A	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.314;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:210,83:0.28:293
chr11	86519925	.	CGT	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.170;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr11	86650282	rs4631906	T	C	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	86782663	rs75455263	A	C	2865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=0.168;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:59,143:0.71:202
chr11	86782716	.	ATT	A	2203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.21;ReadPosRankSum=-1.333;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:20,61:0.75:81
chr11	86782728	rs2513239	T	G	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.75;ReadPosRankSum=-0.130;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:20,61:0.75:81
chr11	86868327	rs79204987	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr11	86868361	rs59532014	GT	G	718.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.342;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:30,56:0.65:86
chr11	86868556	rs77656057	T	G	131.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	86889448	rs4944672	C	T	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.939;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:144,115:0.44:259
chr11	86889612	rs4944673	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=-0.268;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr11	86889621	rs4944674	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.35;ReadPosRankSum=-0.099;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	87032215	rs7112344	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	87846757	rs9144	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	87846803	rs675578	G	A	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=0.990;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:56,91:0.62:147
chr11	87846885	rs16912884	C	T	3914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-1.331;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:114,191:0.63:305
chr11	87847018	rs3740925	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	87908346	rs302647	C	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr11	87908448	rs302646	A	G	7768.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:170,368:0.68:538
chr11	88027209	rs3888798	T	C	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr11	88027393	rs17594	A	C	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr11	88033661	rs217116	A	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	88045583	rs217086	A	G	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	88045815	rs5793312	C	CT	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	88059683	rs217060	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	88068052	rs217076	G	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	88068329	rs217077	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	88242024	rs2941563	T	G	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=6.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.844;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:266,126:0.32:392
chr11	88258689	rs4753486	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.383;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr11	88338165	rs3816649	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	88645129	rs626218	T	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.87;QD=24.33;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	88742342	rs115457689	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr11	88780852	rs79165784	C	T	7634.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:151,347:0.70:498
chr11	88781085	rs143856271	A	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:44,92:0.68:136
chr11	88911696	rs1042602	C	A	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:216,155:0.42:371
chr11	88925328	rs10765197	A	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr11	88961188	rs3793975	G	A	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.231;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:29,48:0.62:77
chr11	89060002	rs28517716	G	A	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-5.284;QD=13.15;ReadPosRankSum=0.403;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:66,119:0.64:185
chr11	89075444	rs55794332	T	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	89133449	rs317139	C	T	12533.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.25;MQRankSum=-0.768;QD=25.17;ReadPosRankSum=0.071;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,496:1.00:498
chr11	89223616	rs490934	C	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	89223931	rs2304500	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr11	89224101	rs3816123	G	T	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.582;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:249,98:0.28:347
chr11	89224131	rs34495256	T	TCTC	2555.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:207,77:0.27:284
chr11	89224229	rs35177439	G	GT	2183.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr11	89224326	rs10830279	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:329,116:0.26:445
chr11	89224453	rs2289125	A	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,28:0.27:105
chr11	89370552	rs72971036	G	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-2.070;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr11	89370598	rs12363392	T	C	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr11	89370719	rs12363079	A	G	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:95,165:0.63:260
chr11	89371726	rs10765221	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:88,24:0.21:112
chr11	89372210	rs7924505	C	T	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr11	89372292	rs7942274	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr11	89372341	rs7942295	T	G	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=0.845;QD=15.00;ReadPosRankSum=0.379;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:39,87:0.69:126
chr11	89372524	rs7945304	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr11	89378138	rs2072623	C	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr11	89378269	rs11018694	C	T	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:103,148:0.59:251
chr11	89403414	rs10734120	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	89413867	rs7128813	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.878;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	89420564	.	G	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-0.819;QD=6.50;ReadPosRankSum=1.094;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:88,53:0.38:141
chr11	89424633	rs372213135	TA	T	3639.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:68,180:0.73:248
chr11	89424740	.	GTATATATATATATATATATATATATATA	GTA,G	1140.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=89;set=Intersection	GT:AF:DP	0/1:0.78:60
chr11	89444754	rs7111680	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr11	89486832	rs116846755	T	C	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:105,236:0.69:341
chr11	89486872	rs74954807	T	C	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:86,199:0.70:285
chr11	89486948	rs140920385	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr11	89531764	rs201172121	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=43.57;MQRankSum=-10.212;QD=12.26;ReadPosRankSum=0.747;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:61,71:0.54:132
chr11	89774197	.	CTTT	C,CTT	1825.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=3.018;MLEAC=1,1;MLEAF=0.500,0.500;MQ=48.64;MQRankSum=-6.413;QD=12.09;ReadPosRankSum=1.517;SOR=0.421;set=HC	GT:AD:AF:DP	1/2:23,36,92:0.24,0.61:151
chr11	89774236	rs74584169	C	G	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.55;MQRankSum=2.844;QD=6.15;ReadPosRankSum=0.245;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:141,83:0.37:224
chr11	89774397	rs150273819	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr11	89774448	rs77759231	G	A	3006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=-13.692;QD=10.40;ReadPosRankSum=0.094;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:135,154:0.53:289
chr11	89896457	rs489009	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr11	89909096	.	A	ATG	1801.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,63:0.83:76
chr11	89935586	rs1045861	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=0.180;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr11	89936093	rs3758757	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr11	89938615	rs36109540	AAG	A	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:4,2:0.33:6
chr11	89939448	rs1943381	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr11	89939569	rs723715	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr11	89943548	rs3832739	T	TCAGA	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.925;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr11	89951367	rs34787918	GA	G	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.375;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr11	89955696	rs114258174	C	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	90602241	rs2105799	G	A	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:99,162:0.62:261
chr11	91545212	rs4753345	C	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	92257703	rs561408	T	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	92257855	.	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DP=331;set=Intersection	GT:AD:AF:DP	0/1:218,103:0.32:321
chr11	92292618	rs508848	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	92497990	rs3847524	C	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr11	92531356	rs7949157	A	G	5415.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:155,257:0.62:412
chr11	92532677	rs12362722	T	C	5251.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:98,237:0.71:335
chr11	92534442	rs3847531	A	G	6257.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:177,299:0.63:476
chr11	92539384	rs4753415	A	G	71.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.36;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	92564767	rs6483189	T	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,85:0.74:115
chr11	92570812	rs11020075	TC	AA	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;JOINED;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr11	92577031	rs4753068	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr11	92577070	rs4753419	T	C	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:69,142:0.67:211
chr11	92590448	rs4753069	A	G	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,89:0.62:144
chr11	92592353	rs116513992	T	A	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:81,165:0.67:246
chr11	92615715	rs12224637	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr11	92615751	rs58520864	T	TC	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr11	92616021	rs80074298	C	T	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:122,226:0.65:348
chr11	92620090	rs138951366	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr11	92622167	rs7125170	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr11	92623608	rs7118363	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr11	92718127	rs1447350	G	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	92718163	rs1447351	A	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	92882096	rs3758676	A	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	92916228	rs10831001	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	92917472	rs11020191	C	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr11	92931056	rs11020196	GC	TT	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr11	93118515	rs3020057	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	93122446	rs3020056	T	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	93122446	.	TC	AA	57	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=0.9998;HP=4;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=57;QD=55.2339374311;SC=CCGACATTTTTCTGTGTGAGA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=93122455;WS=93122436;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	93122447	rs3020055	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	93141580	rs2259633	C	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	93170909	rs375443728	T	TC,TCC	316.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/2:0.55,0.45:11
chr11	93170925	rs2605584	G	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	93212161	rs2605594	A	G	8233.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.407;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=21.06;ReadPosRankSum=0.610;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:35,356:0.91:391
chr11	93212254	rs2658797	C	T	11105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=4.563;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.499;QD=14.93;ReadPosRankSum=-0.823;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:230,514:0.69:744
chr11	93402096	rs1944101	C	A	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	93408831	rs10831088	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:150,58:0.28:208
chr11	93408958	rs35646565	C	CA	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr11	93412774	rs1944100	A	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr11	93425159	rs4753495	C	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.918;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:175,62:0.26:237
chr11	93454831	rs61159915	GGT	G	521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-1.830;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr11	93457532	rs78544176	C	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.632;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:129,37:0.22:166
chr11	93462607	rs7131178	A	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr11	93463145	rs200136546	A	AT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.043;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:104,31:0.23:135
chr11	93463332	rs7101779	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr11	93463666	rs7119918	C	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	93464175	rs1944108	A	C	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.041;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:150,70:0.32:220
chr11	93466866	rs2155248	G	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr11	93469210	rs185591721	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr11	93474570	rs11280945	T	TGCGTGA	11100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=1276;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.687;QD=8.84;ReadPosRankSum=3.580;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:929,327:0.26:1256
chr11	93474678	rs630648	G	C	2781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.466;QD=4.64;ReadPosRankSum=-0.879;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:426,173:0.29:599
chr11	93474791	rs623510	G	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr11	93487008	rs623993	G	A	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	93490682	rs604414	T	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=10.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.520;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr11	93521405	rs676586	C	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.049;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	93527219	rs657177	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:164,106:0.39:270
chr11	93527282	rs5793656	GA	G	1126.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	93534929	.	T	TGA	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.252;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr11	93534930	.	TTC	T	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.474;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr11	93540914	rs72978409	T	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr11	93583790	rs10831106	T	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr11	93754508	rs2511403	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	93754824	rs73568863	G	T	427.89	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr11	93797539	rs73551201	G	A	993.78	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:4,43:0.91:47
chr11	93797619	rs1945783	A	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:180,75:0.29:255
chr11	93801012	rs10765650	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr11	93801062	rs10765651	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr11	93803717	rs1878799	C	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr11	93806416	rs1914725	T	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	93806705	rs2949862	C	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	93834223	rs7927016	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	93844034	rs7925817	G	T	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr11	93862493	rs1138800	A	C	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:88,159:0.64:247
chr11	93886838	rs7928030	G	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr11	93913036	rs12793348	A	G	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:111,179:0.62:290
chr11	93913458	rs3020015	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	93914129	rs12800562	A	G	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-1.563;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:46,95:0.67:141
chr11	94113288	rs3740867	C	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:335,126:0.27:461
chr11	94179125	rs1014666	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr11	94197568	rs640627	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	94203868	rs610611	A	T	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	94209348	rs13447623	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=-0.108;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr11	94212048	rs535801	C	T	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.281;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:28,55:0.66:83
chr11	94212154	rs680695	A	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.493;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr11	94223855	rs608452	A	G	64.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	94225807	rs496797	C	T	424.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.831;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.20;ReadPosRankSum=-1.389;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr11	94225920	rs497763	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-1.963;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:27,60:0.69:87
chr11	94229665	rs540199	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	94231257	rs2509943	C	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.169;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr11	94245740	rs2509324	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.862;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr11	94250684	rs582049	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.368;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	94250709	rs582077	T	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-1.332;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr11	94261255	rs647484	C	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,37:0.34:110
chr11	94264882	rs12294732	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:78,31:0.28:109
chr11	94265043	rs60740931	CT	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.769;QD=1.72;ReadPosRankSum=0.477;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr11	94320237	rs7110167	T	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=1.810;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:79,39:0.33:118
chr11	94322352	rs11020845	AG	TA	6090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.562;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.309;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:390,176:0.31:566
chr11	94326627	rs11020851	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	94326765	rs57607909	G	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:138,67:0.33:205
chr11	94337220	rs593690	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr11	94462311	rs6483359	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr11	94474044	rs11300560	GT	G	3295.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	94474069	rs7946370	G	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:51,92:0.64:143
chr11	94474218	rs10400239	G	C	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:63,118:0.65:181
chr11	94501849	rs2915239	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr11	94583149	rs677994	A	G	93.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.65;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr11	94586973	rs116059442	G	A	71.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.39;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	94602414	rs11020968	C	T	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:420,216:0.34:636
chr11	94696466	rs116625272	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	94699391	.	TACACACAC	T,TACACACACACAC	1031.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.39;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,23,7:0.77,0.23:30
chr11	94699401	rs11020986	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.330;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr11	94699507	rs34805065	A	AT	2904.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	94704037	rs3737505	C	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	94704092	rs4753645	T	A	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	94704094	rs4753646	G	A	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	94704159	rs16921236	T	C	2998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.468;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:93,149:0.62:242
chr11	94704689	rs3831469	A	AAC,AACACAC	1560.14	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=138;set=Intersection	GT:AF:DP	0/1:0.66:112
chr11	94705163	rs72977727	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr11	94730403	.	C	CA	30	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=10;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=1;NR=1;PP=30;QD=21.0;SC=ATCTCATTTGCAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=94730411;WS=94730398;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	94759291	rs28377978	A	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:154,108:0.41:262
chr11	94760206	rs61737594	G	T	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:72,147:0.67:219
chr11	94760310	rs371681614	GCC	G	957.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr11	94782539	rs620838	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	94800902	rs5793709	G	GC	42094.73	.	AC=2;AF=1.00;AN=2;DB;DP=1146;set=Intersection	GT:AD:AF:DP	1/1:0,1124:1.00:1124
chr11	94823448	rs3016947	A	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	94861491	rs599281	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr11	94906285	rs58831783	A	AC	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=0.438;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	94917785	rs181145978	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr11	95509037	rs3789960	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.829;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr11	95512060	rs1150360	A	G	4498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.076;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:117,227:0.66:344
chr11	95519195	rs3748252	A	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	95519506	rs3748253	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr11	95520695	rs1313288	T	C	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr11	95521648	rs1727165	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr11	95521953	rs3748256	A	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,85:0.55:155
chr11	95524067	rs12272061	G	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr11	95528663	rs5793747	C	CT	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr11	95528714	rs522536	C	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr11	95551136	rs666398	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,47:0.87:54
chr11	95555841	rs56284050	G	GTGCCTTTACCAGTGTGTGGATCA	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr11	95561265	rs34100857	TA	T	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	95562327	rs534488	G	A	1846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-0.376;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:34,88:0.72:122
chr11	95562535	rs5793749	G	GA	85.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.81;QD=14.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	95564259	rs644799	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr11	95569183	rs499637	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr11	95569253	rs627568	A	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:54,102:0.65:156
chr11	95580926	rs566204	G	A	3513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.262;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:66,166:0.72:232
chr11	95598629	rs687559	A	G	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:70,109:0.61:179
chr11	95657111	rs3824874	T	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr11	95825374	rs10557243	TTGCTGCTGC	T,TTGC	7087.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=583;set=Intersection	GT:AF:DP	1/2:0.60,0.31:329
chr11	95825797	rs7931870	A	G	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	96092376	rs10765801	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	96106661	rs11021560	C	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.32;ReadPosRankSum=-0.736;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	96116444	rs10831519	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,76:0.76:100
chr11	96123734	rs3842515	T	TG	68.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr11	96125435	rs10545425	CTT	C	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr11	99426742	rs11220444	T	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	99427091	rs2047166	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	99428929	rs11375374	C	CT	1988.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.35;ReadPosRankSum=1.204;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:2,87:0.98:89
chr11	99690286	rs10790978	T	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr11	99715309	rs146952870	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	99932162	rs148837184	C	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	99941322	rs2059014	C	T	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	100061839	rs115119611	G	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr11	100064201	rs145603783	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr11	100168289	rs1944178	C	T	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	100168320	rs75986029	T	TC	13317.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	100169829	rs1944180	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr11	100226773	rs10894795	A	G	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	100641200	rs7944598	A	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	100730087	rs661237	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr11	100730213	rs646392	G	A	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	100804088	rs626529	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr11	100807130	rs581921	T	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:177,95:0.35:272
chr11	100811574	rs35159175	CAT	C	956.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr11	100814409	rs619066	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr11	100819305	rs633967	T	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.630;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr11	100820598	rs141352180	G	A	4843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-1.363;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:107,232:0.68:339
chr11	100820725	rs694556	A	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr11	100827326	rs151243237	AAATAT	A	2716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.189;QD=10.06;ReadPosRankSum=1.720;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:190,80:0.30:270
chr11	100830440	rs7950832	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr11	100830579	rs6590829	G	A	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:221,96:0.30:317
chr11	100830693	rs563460	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	100833059	rs540866	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr11	100847050	rs569270	A	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr11	100847069	rs569336	G	A	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr11	100847749	rs575734	A	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr11	100847829	rs3216738	CA	C	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr11	100909809	rs484389	A	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	100909991	rs500760	T	C	7811.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	100912625	rs2020879	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	100920849	rs11571240	C	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	100921665	rs645213	C	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	100922404	rs578029	A	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	100933598	rs11571221	G	GAATGA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100999838	rs11437764	A	AG	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	101323906	rs115990590	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,50:0.43:116
chr11	101362567	rs71056611	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-0.253;QD=8.59;ReadPosRankSum=-0.385;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	101771248	rs3858418	G	A	9476.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	101771381	rs3858419	G	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	101773284	rs143934689	T	C	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.522;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:35,78:0.69:113
chr11	101775663	rs1661409	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr11	101818728	rs11225080	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:70,48:0.41:118
chr11	101826949	rs930469	T	C	27661.77	.	AC=2;AF=1.00;AN=2;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,1058:1.00:1058
chr11	101832478	rs7926728	G	T	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	101833644	rs7109233	C	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	101848990	rs3740931	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	101857758	rs6590942	G	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	101863706	rs1274901	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	101868415	rs1783742	C	T	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	101918327	rs12804542	A	G	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr11	101918686	rs7934495	A	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	101929900	rs10750626	T	C	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	101982041	rs34558896	T	TGGA	3140.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	102080325	rs35731181	GA	G	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.868;QD=6.42;ReadPosRankSum=-0.664;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr11	102098354	rs3858420	G	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr11	102199608	rs60157696	TA	T	385.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.953;QD=9.89;ReadPosRankSum=0.091;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	102199610	rs59068554	TA	T	137.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.894;QD=3.20;ReadPosRankSum=-0.767;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr11	102199611	rs10895289	A	T	353.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.283;QD=8.23;ReadPosRankSum=1.129;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr11	102207024	rs7124969	C	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	102207851	rs1055088	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	102323160	rs2436036	C	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	102395923	rs181313874	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr11	102449650	rs7934921	T	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	102449951	rs1940054	A	C	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102477226	rs116445633	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr11	102495998	rs2245803	T	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.753;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr11	102562700	rs2509010	C	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-1.026;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr11	102563739	rs1276289	C	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:152,88:0.37:240
chr11	102564804	rs13377379	G	A	3381.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:57,155:0.73:212
chr11	102564832	rs74417532	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.867;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr11	102565732	rs1940042	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr11	102567207	rs1276286	T	A	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=0.649;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:185,113:0.38:298
chr11	102567626	rs1940480	C	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr11	102573396	rs2701994	C	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr11	102573451	rs3809017	T	C	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.644;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:36,67:0.65:103
chr11	102576358	rs2846707	T	C	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	102576375	rs1939015	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.25;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	102576375	.	GTCATCCG	ATCATCCA,ATCATCCG	843	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=27;MQ=59.53;NF=9,42;NR=6,25;PP=112,843;QD=11.0311916575;SC=TTCATTTTCCGTCATCCGGAC;SbPval=0.5;Source=Platypus;TC=68;TCF=43;TCR=25;TR=15,67;WE=102576390;WS=102576365;set=Platypus	GT:AF:DP	0/1:0.22:68
chr11	102576382	rs12099177	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.166;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:114,36:0.24:150
chr11	102584023	rs1939018	T	A	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	102584104	rs35866072	T	G	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:411,189:0.32:600
chr11	102584154	rs147573175	G	A	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:284,126:0.31:410
chr11	102584207	rs33927742	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:102,46:0.31:148
chr11	102584466	rs3832755	G	GT	4593.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.241;QD=21.57;ReadPosRankSum=1.975;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:3,210:0.99:213
chr11	102584607	rs2509013	T	C	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=25.60;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	102585493	.	TTATATATATATATA	T,TTA	386.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.67;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,5,5:0.50,0.50:10
chr11	102586214	rs112478920	T	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr11	102587154	rs58281905	G	GAA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=-0.000;DB;DP=48;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.000;QD=4.49;ReadPosRankSum=-0.753;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr11	102592049	rs113713628	T	TTGTG	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;QD=44.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	102593042	rs948218	T	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	102593053	rs1940474	G	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr11	102593201	rs142718669	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:212,88:0.29:300
chr11	102593248	rs1940475	T	C	7349.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:139,341:0.71:480
chr11	102594376	rs6590983	A	C	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	102594427	rs6590984	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	102595492	rs3765620	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	102595666	rs2155052	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	102623115	rs531335	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	102623120	.	GGT	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.4999;HP=1;HapScore=4;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=20;QD=30.0;SC=AAGCTACACAGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=1;WE=102623129;WS=102623105;set=Platypus	GT:AD:AF:DP	1/0:5,1:0.17:6
chr11	102642716	rs17860997	A	AT	3512.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	102642753	rs17860996	T	A	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:88,107:0.55:195
chr11	102647310	rs470154	T	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	102649235	rs7119084	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr11	102649337	rs17860956	G	A	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:61,123:0.67:184
chr11	102649543	rs470277	T	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	102649954	rs17860950	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	102661080	rs2239008	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.636;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr11	102661665	rs1938901	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	102663503	rs7125062	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:131,68:0.34:199
chr11	102666037	rs17884145	A	G	1907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.258;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:42,87:0.67:129
chr11	102666043	rs491152	A	G	4840.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.73;ReadPosRankSum=-0.813;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr11	102666316	rs470558	T	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	102668603	rs5794198	CA	C	324.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.546;QD=11.60;ReadPosRankSum=2.560;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr11	102668702	rs470358	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.619;QD=4.16;ReadPosRankSum=1.170;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:81,33:0.29:114
chr11	102707033	rs181557986	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	102710916	rs145663265	C	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr11	102713620	rs679620	T	C	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:74,169:0.70:243
chr11	102714054	rs111453231	T	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr11	102714220	rs116604710	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:109,48:0.31:157
chr11	102735103	rs476185	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	102735140	rs644552	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.026;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr11	102737937	rs147711068	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr11	102738598	rs142575326	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr11	102738793	rs5794199	G	GT	9277.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	102738795	rs5003690	G	T	9286.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	102743867	rs140752089	A	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	102745469	rs28360358	GCAAA	G	238.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	102815970	rs61571704	CA	C	229.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.091;QD=9.97;ReadPosRankSum=0.856;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr11	102818662	rs17860568	T	C	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-1.078;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:253,116:0.31:369
chr11	102820805	rs139253521	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr11	102822649	rs11225490	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	102822733	rs3819089	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=1.650;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr11	102824826	rs478927	T	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-1.793;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr11	102825091	rs640198	T	G	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.842;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:65,102:0.61:167
chr11	102980210	rs114993913	G	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr11	103004929	rs2450918	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	103013954	rs2514006	G	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	103019443	rs2514000	C	G	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	103022842	.	G	GTTT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.000;QD=11.21;ReadPosRankSum=-0.596;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	103026040	rs5794210	CT	C	364.92	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr11	103027440	rs74713170	C	T	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:68,116:0.63:184
chr11	103029373	rs688094	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103033914	rs657936	A	T	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	103047007	rs585692	C	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	103050028	rs632672	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	103052558	rs11225584	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-1.048;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr11	103057048	rs658804	A	G	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.644;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:277,95:0.26:372
chr11	103058126	rs586592	C	T	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-2.827;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:320,129:0.29:449
chr11	103060309	rs617059	A	G	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	103074349	rs631712	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	103074639	rs613978	C	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	103082590	rs589623	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	103086381	rs679691	G	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	103086399	rs78873690	G	GTA	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	103086725	rs635193	C	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr11	103091237	rs636510	A	G	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103091546	rs670464	G	A	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	103092945	rs654061	A	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	103092968	rs669940	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	103104930	rs1784259	C	A	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	103112358	rs58174873	CT	C	1508.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr11	103123999	rs648387	G	T	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr11	103158278	rs10895391	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.051;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:160,49:0.23:209
chr11	103229188	rs2512128	G	C	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:81,167:0.67:248
chr11	103229238	rs2512129	G	A	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr11	103270607	rs10895417	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:112,68:0.38:180
chr11	103306594	rs501413	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	103344753	rs11225821	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	103780455	rs10791649	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:108,46:0.30:154
chr11	103780610	rs4754997	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:81,32:0.28:113
chr11	103780695	rs4754998	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	103818344	rs11226083	G	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:212,116:0.35:328
chr11	104757836	rs5794352	T	TA	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	104758003	rs146027803	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr11	104758035	rs484438	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	104761013	rs635846	T	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	104761100	rs513131	T	C	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr11	104761206	rs647039	C	T	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	104761271	rs693506	A	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,23:0.29:78
chr11	104762228	rs544216	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	104763117	rs497116	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:157,67:0.30:224
chr11	104763639	rs150665459	T	C	4961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=1.437;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:145,243:0.63:388
chr11	104763716	rs617983	A	G	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	104768000	rs693001	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:298,122:0.29:420
chr11	104768098	rs555367	T	C	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	104768909	rs650940	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr11	104769174	rs73629701	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:43,123:0.74:166
chr11	104819327	rs9507	T	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	104819448	rs368269212	A	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.925;QD=4.77;ReadPosRankSum=0.439;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:134,58:0.30:192
chr11	104819542	rs5794358	G	GAAAC,GAAACAGAC	1915.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=49;set=Intersection	GT:AF:DP	1/1:1.00:43
chr11	104819544	.	GAG	CAC	967	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=3;MGOF=13;MMLQ=19;MQ=59.06;NF=8;NR=14;PP=967;QD=46.3849034028;SC=CACACAGAGAGAGACACACAC;SbPval=0.54;Source=Platypus;TC=28;TCF=10;TCR=18;TR=22;WE=104819554;WS=104819530;set=Platypus	GT:AD:AF:DP	1/1:6,22:0.79:28
chr11	104819544	rs33955446	G	GACAC	1728.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.16;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	104819546	rs5004914	G	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	104820163	rs649739	A	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	104839091	.	C	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.998;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr11	104839222	rs658560	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.40;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	104866461	rs540819	A	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr11	104869708	rs523104	G	C	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	104872981	rs544211	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr11	104877717	rs2282658	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	104877803	rs2282657	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:84,143:0.63:227
chr11	104877927	rs507879	T	C	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:127,260:0.67:387
chr11	104879628	rs3181320	G	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,89:0.66:135
chr11	104879700	rs7935132	A	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:82,112:0.58:194
chr11	104896375	rs2509648	G	T	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	104896893	rs476889	C	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr11	104896937	rs148707413	G	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr11	104912221	rs542571	T	A	3115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=0.947;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:75,146:0.66:221
chr11	104971210	rs1792771	C	T	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr11	104972190	rs1792773	C	T	6982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.169;QD=13.20;ReadPosRankSum=1.790;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:185,344:0.65:529
chr11	105009589	rs149496153	T	C	5897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-2.039;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:149,293:0.66:442
chr11	105010448	rs115390164	A	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:87,145:0.62:232
chr11	105010531	rs146488210	C	T	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:90,177:0.66:267
chr11	105010669	rs140822282	A	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr11	105732687	rs2277280	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr11	105782501	rs60005308	A	AATATAT	335.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	105789750	rs674307	A	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	105836923	rs632549	G	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	105842740	rs61736488	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr11	105842916	rs559190	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	105844923	rs509512	C	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr11	105965216	rs1893175	G	T	40.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	106407855	.	AATATATATAT	A	665.73	.	AC=1;AF=0.500;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.26;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	106408031	rs11279851	TCAAATG	T	2791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=7.14;ReadPosRankSum=2.459;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:302,89:0.23:391
chr11	106408071	rs1791468	C	T	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-2.624;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:252,81:0.24:333
chr11	106408212	rs2852371	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr11	106579204	rs12420232	C	A	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	106680653	rs141065153	CAATTT	C	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr11	106695514	.	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-5.558;QD=1.03;ReadPosRankSum=1.225;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr11	106695697	rs77535954	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr11	106807443	rs11331245	AT	A	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:31,174:0.85:205
chr11	106888457	rs116143305	C	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.025;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr11	107197536	rs630782	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	107197606	rs630693	G	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	107197869	rs12363600	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr11	107205505	rs75471394	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,21:0.26:82
chr11	107216388	rs474364	C	T	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107286832	.	GATAAAATAAAATAAAAA	G	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=1.241;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr11	107286893	rs11439588	T	TG	1468.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	107286943	rs17106909	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.000;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr11	107299623	rs35968518	A	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:232,122:0.34:354
chr11	107299631	rs659040	G	A	5336.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:135,251:0.65:386
chr11	107304237	rs549909	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr11	107304541	rs2432867	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr11	107304572	rs71470848	AT	A	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.849;QD=28.58;ReadPosRankSum=-0.926;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	107309819	rs147767886	T	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-3.021;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr11	107313608	rs144259680	G	GAGGAAGGA	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=2.989;QD=11.33;ReadPosRankSum=1.612;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr11	107325376	.	AT	A	262	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=7;HapScore=2;MGOF=34;MMLQ=27;MQ=59.62;NF=1;NR=6;PP=262;QD=39.8571428571;SC=GAGAAAAAAAATAAACCACAT;SbPval=0.52;Source=Platypus;TC=10;TCF=1;TCR=9;TR=7;WE=107325384;WS=107325366;set=Platypus	GT:AD:AF:DP	1/0:3,7:0.70:10
chr11	107326340	rs618078	C	A	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:53,123:0.70:176
chr11	107328705	rs17106974	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr11	107381650	rs145502774	C	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr11	107396158	rs12574614	T	C	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	107420530	rs645056	A	G	9365.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr11	107422434	rs1269387	T	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=40.08;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	107422437	rs60431822	T	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=40.08;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	107424033	rs41416346	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	107431637	rs662349	C	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	107462878	rs542650	A	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	107462977	rs5794560	G	GT	326.19	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:0,13:1.00:13
chr11	107535758	rs647756	G	A	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	107578721	rs583362	C	G	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	107643102	rs28695914	T	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	107643289	rs60511673	T	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=25.53;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	107646894	rs34492014	C	CA	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.397;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	107646918	rs484427	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	107650473	rs650686	G	A	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-2.111;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:38,91:0.71:129
chr11	107650505	rs519422	C	G	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:37,84:0.69:121
chr11	107663631	rs148577551	TTTTCTTTC	T	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr11	107673628	rs556153	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	107675566	rs495836	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr11	107677399	rs34066069	C	CA	4828.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:113,202:0.64:315
chr11	107686741	rs371223301	TAC	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.922;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	107904646	rs10890800	C	T	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	107917087	rs7117111	A	G	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	107948858	rs10890807	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.667;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr11	107965262	rs12792042	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.49;ReadPosRankSum=1.539;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	107969300	rs11302777	GT	G	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.750;QD=6.45;ReadPosRankSum=0.974;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	107992325	rs3741055	T	A	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.161;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:143,46:0.24:189
chr11	107992346	rs3741056	G	C	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.478;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:112,38:0.25:150
chr11	108004798	rs7931681	A	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	108004927	rs201199156	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.384;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:67,23:0.26:90
chr11	108006047	rs10890817	A	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	108006127	rs112984130	T	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr11	108012510	rs34420529	A	AAAGT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	108013093	rs10890818	A	G	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:98,51:0.34:149
chr11	108014662	rs5794587	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.06;ReadPosRankSum=1.413;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	108014684	rs374107553	AC	A	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=2.172;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr11	108014799	rs10890819	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.273;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:150,38:0.20:188
chr11	108043079	rs367951362	A	G	5543.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:132,253:0.66:385
chr11	108043988	rs2070661	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	108046884	.	TCTA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.674;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr11	108055829	rs116455961	C	A	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-0.897;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr11	108059000	rs3781869	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	108061039	.	CAAA	C	98	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;QD=24.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	108061379	rs659584	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	108064607	rs7926603	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=-1.402;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr11	108064935	rs11212546	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	108068954	rs683312	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	108079315	rs34033921	T	TA	236.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.051;MLEAC=2;MLEAF=1.000;MQ=61.34;MQRankSum=0.567;QD=14.80;ReadPosRankSum=0.000;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	108093208	rs228589	A	T	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	108098459	rs2066734	TAA	T	3109.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	108121410	rs34325032	C	CT	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.367;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr11	108129657	rs672655	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	108137775	rs642496	T	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	108141701	rs651030	G	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	108141955	rs373881770	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.194;SOR=1.689;set=HC	GT:AD:AF:DP	0/1:63,30:0.32:93
chr11	108143182	rs664677	C	T	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	108151707	rs3218681	T	TA	841.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.41;QD=23.38;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	108183167	rs659243	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	108188342	rs376739319	TTATATA	T	229.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;QD=32.82;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	108188373	.	T	C	54.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.319;QD=13.57;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	108188375	rs200773296	T	C	54.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.319;QD=13.57;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	108188377	rs199874977	T	C	54.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.319;QD=13.57;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	108188379	rs3017871	T	C	118.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	108196712	rs3212322	CATT	C	661.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	108218196	rs227075	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	108224697	rs179108	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	108225483	rs664982	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	108225661	rs664143	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	108256837	rs113995	A	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	108345515	rs11374964	G	GA	3153.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	108352160	rs3901850	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	108361578	rs11212676	G	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	108380335	rs1943382	T	C	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr11	108383676	rs10749920	A	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:161,75:0.32:236
chr11	108384207	rs2846412	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:165,71:0.30:236
chr11	108409784	rs2640785	T	A	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.206;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:243,90:0.27:333
chr11	108564239	rs376427484	G	A	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.532;QD=8.44;ReadPosRankSum=-1.379;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:72,61:0.46:133
chr11	109964079	rs7116552	C	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	109964089	rs11395531	T	TG	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	110007294	rs146516439	T	TTTGAGTAG	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr11	110007834	rs78240010	T	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:163,73:0.31:236
chr11	110023628	rs665013	C	T	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	110033860	rs11213287	T	C	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	110035988	rs369647657	C	G	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:405,200:0.33:605
chr11	110050502	rs11213291	C	T	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.000;QD=9.78;ReadPosRankSum=-0.599;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:62,64:0.51:126
chr11	110050628	.	C	CTT	463.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.920;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr11	110103924	rs10450619	A	C	60.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	110118364	rs17110988	A	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr11	110126197	rs2306085	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr11	110128994	rs10789756	C	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr11	110150486	rs61003001	TA	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.397;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	110306748	rs35520653	G	GT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.199;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr11	110452013	rs185080458	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	110452999	rs2008772	C	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=-0.709;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr11	110453009	rs4079590	G	A	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.17;ReadPosRankSum=-0.441;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr11	110453250	rs4142632	C	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	110479839	rs71960440	AT	A	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.621;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr11	110582310	rs2305289	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	110697305	rs120434	C	G	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:62,117:0.65:179
chr11	110697444	rs120436	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr11	111154714	rs55711867	G	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr11	111156836	rs3087967	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr11	111166771	rs74596761	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr11	111179054	rs3087587	A	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:291,124:0.30:415
chr11	111228098	rs2282637	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr11	111228602	rs76889866	C	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr11	111229470	rs12282082	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr11	111230529	rs4938496	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	111325007	rs61896868	C	T	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.998;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:121,62:0.34:183
chr11	111326284	rs7925584	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr11	111327213	rs11213913	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:252,108:0.30:360
chr11	111338478	rs651882	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-2.691;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr11	111368047	rs489078	G	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:146,62:0.30:208
chr11	111383789	rs11606481	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.039;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr11	111411722	.	C	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=1.752;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr11	111420364	rs634679	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.501;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr11	111487106	rs571462	C	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.132;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr11	111623088	rs4936675	T	A	13155.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr11	111636627	rs643506	T	G	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	111636864	rs582055	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr11	111637117	rs139691367	T	TCCCGCCCCGCGCCCAGGC	4608.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr11	111659476	rs2554996	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.31;ReadPosRankSum=-1.884;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	111724133	rs10502151	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.644;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:141,58:0.29:199
chr11	111739208	rs683889	T	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr11	111739539	rs685301	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr11	111742145	rs10708475	CG	C	8454.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	111747427	rs634983	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	111749265	rs3802845	C	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.137;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:221,76:0.26:297
chr11	111749349	rs611010	A	T	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	111754056	rs594098	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr11	111780104	rs68187136	TA	T	217.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;MQRankSum=0.722;QD=13.61;ReadPosRankSum=0.868;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	111795085	rs7124407	C	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-1.013;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr11	111795148	rs7124433	C	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	111796969	rs11214045	G	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	111800488	rs5794769	A	AT	2785.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:7,137:0.95:144
chr11	111848361	rs11364849	AG	A	2133.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	111848531	rs10891303	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:126,51:0.29:177
chr11	111853106	rs11455434	G	GC	5971.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	111889635	rs650461	C	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	111889654	rs476581	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	111896324	rs2303436	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:185,134:0.42:319
chr11	111896801	rs670838	T	C	74.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	111903995	rs478941	T	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	111908162	rs627441	T	C	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	111908200	rs539991	G	T	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:68,105:0.61:173
chr11	111915765	rs11455845	C	CA,CAA	839.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.622;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.90;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.514;SOR=1.254;set=HC	GT:AD:AF:DP	1/2:9,31,16:0.55,0.29:56
chr11	111916001	rs11335731	AG	A	4887.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	111916647	rs10891314	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.979;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr11	111930576	rs3882890	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr11	111933088	rs10891315	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.183;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr11	111933355	rs534753	C	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	111941154	rs677699	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.942;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	111956989	rs14396	C	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:149,78:0.34:227
chr11	111957143	rs487201	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr11	111957819	rs7121782	G	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.638;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr11	111963860	rs592626	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-0.087;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr11	112041128	rs149903853	TTTTGTCCTG	T	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr11	112064431	rs7105056	T	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.374;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:99,38:0.28:137
chr11	112065434	rs10891338	T	C	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:284,164:0.37:448
chr11	112065483	rs7123686	A	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:200,133:0.40:333
chr11	112071570	rs7948124	AA	TT	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr11	112072930	rs4935984	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr11	112072992	rs376091859	TTC	T	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr11	112087101	rs2676377	T	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,48:0.39:124
chr11	112088499	rs2217401	A	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:101,49:0.33:150
chr11	112099410	rs3819331	T	C	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.450;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr11	112123095	rs2564872	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:168,72:0.30:240
chr11	112130987	rs2518361	G	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr11	112832307	rs11381910	G	GA	13657.73	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	112832339	rs11284059	GC	G	11823.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	112832353	rs7105734	T	C	10607.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.36;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	112832358	rs6589347	T	C	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	112952272	rs5794840	C	CT	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.214;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:49,43:0.47:92
chr11	112984037	rs1245087	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	113067854	rs973461	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr11	113073054	rs112087457	G	GT	1234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.221;QD=12.47;ReadPosRankSum=1.396;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:30,69:0.70:99
chr11	113073066	.	T	TTTTTGTTTTG	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-1.951;QD=7.26;ReadPosRankSum=0.003;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr11	113076982	rs1975259	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.980;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	113085244	rs686050	C	G	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.416;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:135,40:0.23:175
chr11	113103996	rs584427	T	G	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	113105907	rs646558	C	A	5320.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:114,248:0.69:362
chr11	113107204	rs652285	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	113113515	rs635596	G	A	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	113142322	rs11214563	G	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr11	113186776	rs2236709	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr11	113200254	rs78981208	C	T	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr11	113200709	rs2303380	G	A	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:62,140:0.69:202
chr11	113200731	rs78183568	A	G	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:48,110:0.70:158
chr11	113205595	rs76717283	T	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-1.216;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr11	113209931	rs111663834	GA	G	253.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=2.744;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	113210096	rs35609733	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:84,178:0.68:262
chr11	113211329	rs2288159	G	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr11	113212764	rs117682492	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr11	113215124	rs17115380	C	T	5027.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:178,247:0.58:425
chr11	113222984	rs17115393	G	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr11	113223076	rs140835432	A	AT	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	113229922	rs141972276	C	CT	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	113230773	.	C	CTTGTTTTGTT	204.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	113233059	rs2298490	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr11	113234466	rs713233	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	113234679	rs719802	T	C	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=1.233;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:35,70:0.67:105
chr11	113235419	rs2298489	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr11	113235864	rs7949242	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	113239082	rs10891540	G	A	14682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-3.198;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:347,695:0.67:1042
chr11	113254054	rs74535735	C	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,106:0.66:160
chr11	113264272	rs17115439	T	C	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:103,189:0.65:292
chr11	113264470	rs4938013	A	C	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:80,149:0.65:229
chr11	113265292	rs10891546	T	C	518.78	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr11	113266679	rs34863235	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.566;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:91,37:0.29:128
chr11	113266702	rs11214598	T	C	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	113266821	rs7118900	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:337,151:0.31:488
chr11	113268059	rs11604671	G	A	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:53,106:0.67:159
chr11	113270015	rs4938016	G	C	14553.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr11	113270160	rs2734849	A	G	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:106,258:0.71:364
chr11	113270374	rs2734848	C	T	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	113270828	rs1800497	G	A	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	113271065	rs2734847	T	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	113281397	rs6276	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr11	113283477	rs6275	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:139,48:0.26:187
chr11	113283564	rs4986921	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr11	113285299	rs2511521	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr11	113560477	rs115825770	C	T	7746.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:161,355:0.69:516
chr11	113561054	rs7110736	A	G	10604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.601;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:163,260:0.61:423
chr11	113561057	rs7110738	A	G	10670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=-0.414;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:161,275:0.63:436
chr11	113561780	rs76824718	C	T	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:97,178:0.65:275
chr11	113566207	rs4936279	C	A	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:118,170:0.59:288
chr11	113569933	rs12797654	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	113570405	rs4936280	T	C	6215.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:101,284:0.74:385
chr11	113570490	rs3802856	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:19,66:0.78:85
chr11	113576932	rs7926267	A	G	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr11	113608164	rs3835162	GA	G	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.158;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr11	113609854	rs4351850	T	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr11	113618968	rs2513584	G	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:123,47:0.28:170
chr11	113631413	rs60170555	TA	T	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.530;QD=2.45;ReadPosRankSum=-0.450;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:60,28:0.32:88
chr11	113670052	rs2459971	T	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:224,136:0.38:360
chr11	113678924	rs2513582	G	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr11	113679119	rs2465647	C	T	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.877;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:246,91:0.27:337
chr11	113680018	rs2513581	G	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,12:0.23:52
chr11	113802601	rs1176746	A	G	15430.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr11	113802934	rs1176745	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr11	113803028	rs1176744	A	C	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:120,205:0.63:325
chr11	113803104	rs2276305	G	A	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:301,149:0.33:450
chr11	113813613	rs1176761	T	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr11	113846006	rs1062613	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:102,58:0.36:160
chr11	113846077	rs33940208	C	T	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:192,116:0.38:308
chr11	113848184	rs4020460	G	GCT	866.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,28:0.29:98
chr11	113852187	rs1176719	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	113852199	rs2276303	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	113853699	rs3737457	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr11	113857843	rs2276304	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:122,52:0.30:174
chr11	113860425	rs1176713	A	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:275,128:0.32:403
chr11	114027277	rs17116545	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr11	114057944	rs682155	A	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr11	114167476	rs3819100	T	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr11	114182670	rs11214940	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	114310469	rs476200	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	114315188	rs540712	A	G	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	114393832	rs77292976	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,52:0.85:61
chr11	114398627	rs35058533	CA	C,CAA	3542.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=272;set=Intersection	GT:AF:DP	1/2:0.61,0.32:243
chr11	114401247	rs7941796	A	G	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:125,185:0.60:310
chr11	114401283	rs7941923	C	T	5161.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:158,229:0.59:387
chr11	114401577	rs524911	T	C	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:359,206:0.36:565
chr11	114401611	rs7944960	A	G	6418.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:180,307:0.63:487
chr11	114421646	rs79339030	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr11	114421674	rs75026329	G	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-0.750;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr11	114421683	rs79413019	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.057;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:46,27:0.37:73
chr11	114421695	rs367947713	G	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.053;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:51,41:0.45:92
chr11	114421698	rs75909356	A	G	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.034;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:60,36:0.38:96
chr11	114421705	rs78231204	A	G	1389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.801;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr11	114421711	rs77069178	C	T	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.385;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:74,42:0.36:116
chr11	114421713	rs112529011	GT	G	1522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.934;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:79,42:0.35:121
chr11	114421721	rs78612878	G	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.750;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:86,46:0.35:132
chr11	114421747	rs78105386	G	A	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.247;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:116,54:0.32:170
chr11	114421754	rs73016111	G	A	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=5.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=1.255;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:127,57:0.31:184
chr11	114421768	rs75860289	A	T	1982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.344;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr11	114421769	rs76481835	C	G	1982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.254;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr11	114421773	rs74572030	A	G	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.588;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:145,56:0.28:201
chr11	114421789	rs113431368	A	AC	1730.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:152,51:0.25:203
chr11	114421799	rs79701489	C	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:153,49:0.24:202
chr11	114421817	rs73568242	G	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:186,41:0.18:227
chr11	114421857	rs78453693	T	C	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.659;QD=9.77;ReadPosRankSum=-3.431;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:175,78:0.31:253
chr11	114421861	rs76118887	G	A	2464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.688;QD=9.70;ReadPosRankSum=-2.965;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:171,83:0.33:254
chr11	114421895	rs78257939	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:155,117:0.43:272
chr11	114421909	rs79082937	T	C	4557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.125;QD=16.76;ReadPosRankSum=3.415;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:151,121:0.44:272
chr11	114421912	rs78658939	A	G	5394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.039;QD=18.80;ReadPosRankSum=2.479;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:148,139:0.48:287
chr11	114421927	rs78842965	G	A	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:133,138:0.51:271
chr11	114421962	rs75409523	G	A	3325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=18.17;ReadPosRankSum=-0.535;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:94,89:0.49:183
chr11	114421967	rs79109814	A	G	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=18.83;ReadPosRankSum=-0.712;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:87,84:0.49:171
chr11	114422003	rs73568250	A	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.397;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr11	114422016	rs76270589	T	A	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.320;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=17.62;ReadPosRankSum=0.577;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr11	114422025	rs75158214	C	A	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=-0.093;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:27,28:0.51:55
chr11	114422029	rs78778953	T	G	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.152;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.45;ReadPosRankSum=-0.237;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr11	114422036	rs77481744	C	T	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.35;ReadPosRankSum=-0.689;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr11	114422052	rs10790022	G	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr11	114422068	rs76698432	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.050;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr11	114422070	rs75429280	A	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.276;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	114441595	rs1850521	G	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	114442103	rs550897	A	G	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	114442217	rs7936112	C	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:32,88:0.73:120
chr11	114442265	rs481080	G	A	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	114550334	rs1612325	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	114569054	rs1712838	A	G	7931.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:189,366:0.66:555
chr11	115040432	rs17118021	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr11	115068975	rs45622340	T	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr11	116629734	rs35268246	TA	T,TAA	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.506;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.841;SOR=1.151;set=HC	GT:AD:AF:DP	1/2:10,48,17:0.64,0.23:75
chr11	116629949	rs4938310	C	T	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:89,171:0.66:260
chr11	116631391	rs3741301	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr11	116631690	rs3741300	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr11	116631707	rs3825041	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	116633825	rs918144	C	T	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:115,174:0.60:289
chr11	116640768	rs1269325	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.733;QD=3.40;ReadPosRankSum=1.629;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:54,27:0.33:81
chr11	116640772	.	CA	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.527;QD=1.52;ReadPosRankSum=0.779;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:62,33:0.35:95
chr11	116641028	rs1263151	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr11	116654159	rs618923	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr11	116654435	rs603446	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr11	116655199	.	C	T	522.77	.	AC=1;AF=0.500;AN=2;DP=194;set=Intersection	GT:AD:AF:DP	0/1:149,43:0.22:192
chr11	116660813	rs619054	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr11	116661826	rs2072560	T	C	11899.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr11	116662033	rs36077557	TG	T	6800.73	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:134,234:0.64:368
chr11	116662579	rs651821	C	T	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	116701535	rs4520	T	C	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	116703464	rs5129	C	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:52,98:0.65:150
chr11	116703640	rs5128	G	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr11	116703671	rs4225	G	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr11	116707684	rs2070665	A	G	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:50,95:0.66:145
chr11	116708020	rs5070	A	G	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:73,166:0.69:239
chr11	116729013	rs539858	T	C	4584.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:143,212:0.60:355
chr11	116729196	rs541586	T	C	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:75,125:0.62:200
chr11	116730340	rs75419894	A	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:45,88:0.66:133
chr11	116732512	rs2075292	G	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,99:0.71:139
chr11	116747282	rs17120119	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr11	116824620	rs2289890	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr11	116824884	rs511676	T	G	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:73,114:0.61:187
chr11	117006414	rs470898	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr11	117023303	rs74985866	T	A	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-0.978;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:22,43:0.66:65
chr11	117023308	rs76864222	T	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-0.195;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr11	117030581	rs1871757	T	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr11	117030624	rs35139041	AT	A	746.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr11	117034358	rs145667427	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr11	117034388	.	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=1.657;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr11	117034619	rs7122944	G	T	4127.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:102,188:0.65:290
chr11	117038447	rs7938902	C	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	117042377	rs4936367	G	A	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr11	117052069	rs35248926	GTCTCT	G	3075.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr11	117053433	rs2046150	C	A	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:131,222:0.63:353
chr11	117054370	rs34033077	C	CT	309.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr11	117054709	rs2046149	C	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:65,112:0.63:177
chr11	117058062	rs2306472	C	T	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:150,246:0.62:396
chr11	117058514	rs76382289	C	A	7770.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:151,351:0.70:502
chr11	117059347	rs90192	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr11	117059794	rs7933134	G	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr11	117062489	rs3213459	T	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:50,103:0.67:153
chr11	117062858	rs146690904	TG	T	2177.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr11	117063709	rs2301174	C	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,82:0.71:115
chr11	117064776	rs11605883	C	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr11	117074229	rs641620	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr11	117074299	rs2269397	T	C	469.56	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr11	117077034	rs28590104	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	117078656	rs199890178	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.49;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	117090545	rs3882895	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr11	117090558	rs74830	C	T	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	117095361	rs236919	C	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	117096857	rs11419279	C	CT	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.627;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr11	117097952	rs2306473	C	T	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:48,136:0.74:184
chr11	117100594	rs500389	A	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr11	117109270	rs678837	G	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	117110417	rs73010409	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr11	117110727	rs74783853	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	117110740	rs650585	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	117151014	rs3832781	A	AGTTT	1241.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,37:0.32:114
chr11	117152194	rs57876538	C	CT	4080.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:79,177:0.69:256
chr11	117152540	rs505045	G	T	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	117153645	.	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.133;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr11	117160347	rs539765	A	G	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	117163765	rs490460	C	A	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	117163824	rs638405	C	G	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:87,164:0.65:251
chr11	117186506	rs28917234	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr11	117222592	rs490262	G	A	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.824;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:131,75:0.36:206
chr11	117232492	rs2305825	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr11	117241760	rs2305826	T	A	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	117251143	rs2305828	A	G	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	117251521	rs2061293	G	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	117252489	rs897836	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	117253573	rs116343381	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr11	117258198	rs501776	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr11	117261488	rs897837	C	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr11	117266312	rs2305830	C	G	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:74,108:0.59:182
chr11	117266754	rs693147	A	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,79:0.59:133
chr11	117267884	rs573455	A	G	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:112,175:0.61:287
chr11	117282800	rs522885	G	T	20546.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=-0.688;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,781:1.00:782
chr11	117299015	rs2925768	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	117299039	rs3741283	G	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.525;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:90,57:0.39:147
chr11	117299617	rs7935468	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr11	117301818	rs4356265	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr11	117303242	rs60580523	C	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:24,94:0.80:118
chr11	117303393	rs880615	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	117304196	rs2242133	C	T	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:26,71:0.73:97
chr11	117306291	rs661789	G	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	117308927	rs10892101	C	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.07;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	117309494	rs74490241	C	A	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=1.276;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:49,99:0.67:148
chr11	117309494	.	CG	AA	955	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=27;MQ=60.0;NF=44;NR=19;PP=955;QD=16.0074265851;SC=GCCCCCAGATCGTTTCTGTCA;SbPval=0.53;Source=Platypus;TC=97;TCF=68;TCR=29;TR=63;WE=117309503;WS=117309484;set=Platypus	GT:AD:AF:DP	1/0:34,63:0.65:97
chr11	117309495	rs10892104	G	A	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.61;SOR=1.502;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	117309527	rs75808396	G	A	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:113,175:0.61:288
chr11	117309989	rs11216386	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:351,145:0.29:496
chr11	117310022	rs11216387	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:264,109:0.29:373
chr11	117321248	.	G	T	1345.77	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:167,81:0.33:248
chr11	117332343	rs2298766	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-1.270;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:20,47:0.70:67
chr11	117332352	rs588048	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.89;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	117335722	rs538847	T	C	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	117351147	rs75603981	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:243,124:0.34:367
chr11	117375596	rs2276343	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr11	117376413	rs34138305	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:245,116:0.32:361
chr11	117389517	rs3819210	A	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr11	117391966	rs2276340	G	A	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:155,287:0.65:442
chr11	117395481	rs2276339	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr11	117403235	rs3741280	G	T	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	117580254	rs2508559	T	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	117580356	rs605500	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	117580509	rs655086	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	117580585	rs604245	A	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	117647364	rs13377544	T	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	117647496	rs17311045	C	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:94,64:0.41:158
chr11	117667668	rs145539778	CG	C	2567.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr11	117704320	.	T	C	1115.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr11	117707191	rs10790214	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.868;QD=3.72;ReadPosRankSum=-0.510;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:91,33:0.27:124
chr11	117713653	rs149530999	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=3.562;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr11	117772787	rs71041806	GCA	G	45.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr11	117772848	rs491822	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr11	117773110	rs494457	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	117774146	rs2186627	C	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:89,166:0.65:255
chr11	117774291	rs2845712	A	C	12292.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr11	117776471	rs3802873	C	T	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:65,147:0.69:212
chr11	117776526	rs3802872	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr11	117781435	rs2155194	A	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	117781618	rs2155195	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr11	117782638	rs2277288	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr11	117784434	rs11605749	C	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr11	117785260	rs4936410	T	C	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:164,304:0.65:468
chr11	117789077	rs142048875	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr11	117789312	rs201746372	CGGGCTGGAGATGCCT	C	5856.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	117790658	rs10790220	C	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	117790674	rs12418028	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr11	117799923	rs7928668	T	C	6894.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:188,333:0.64:521
chr11	117800083	rs10892196	T	C	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:92,122:0.57:214
chr11	117800169	rs11600129	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr11	117857271	rs56175324	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:172,86:0.33:258
chr11	117857338	rs10892202	G	C	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:108,219:0.67:327
chr11	117857499	rs78574659	C	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:138,87:0.39:225
chr11	117859209	rs4252249	G	A	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:69,137:0.67:206
chr11	117863846	rs4252270	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr11	117864047	rs2256111	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:221,94:0.30:315
chr11	117869670	rs2229113	A	G	6995.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	117899803	rs617357	G	A	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	117899816	rs617345	T	G	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	117975576	rs74764393	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.260;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:117,66:0.36:183
chr11	117975627	rs11216756	T	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr11	117978578	rs1894176	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,29:0.29:99
chr11	117979744	rs10892216	C	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	117979814	rs10892217	C	T	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	117982379	rs12290182	T	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr11	117982392	rs12290184	T	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr11	117982464	rs12270001	A	G	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:150,81:0.35:231
chr11	117982495	rs1941635	T	G	10326.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr11	117982731	rs76497990	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr11	117984256	rs694850	T	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	117988082	rs642215	T	C	8020.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	117988223	rs643014	G	A	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	117988654	rs7123209	G	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	117996119	rs7944738	C	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	118007915	rs66549461	T	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr11	118011776	rs668468	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	118011860	rs12804550	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr11	118016039	rs955917	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr11	118016068	rs1793137	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr11	118037813	rs8192613	G	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:191,118:0.38:309
chr11	118039224	rs686295	C	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr11	118039273	rs645675	T	C	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr11	118067426	rs648947	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr11	118067621	rs951657	A	G	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.808;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:257,90:0.26:347
chr11	118068752	rs2298831	T	C	5296.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:124,248:0.67:372
chr11	118068949	rs1617182	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr11	118071097	rs1626649	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.753;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	118074117	rs1793173	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118074274	rs75667040	C	T	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:93,146:0.61:239
chr11	118074337	rs1793174	A	G	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	118083044	rs17121893	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr11	118083664	rs1715429	A	G	11080.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr11	118100504	rs939272	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr11	118100521	rs939271	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr11	118100634	rs7105729	T	A	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:105,149:0.59:254
chr11	118100699	rs3062199	CAT	C	4670.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:84,122:0.59:206
chr11	118104319	rs57738691	C	T	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:81,183:0.69:264
chr11	118104423	rs1793160	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr11	118107805	rs1793140	A	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	118108003	rs1793141	G	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	118108070	rs1573560	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.65;ReadPosRankSum=0.479;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr11	118110908	rs17121973	G	A	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:87,137:0.61:224
chr11	118110977	rs2853006	T	C	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	118133589	rs79368713	C	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	118134595	rs58453797	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	118134785	rs1624780	T	G	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	118184367	rs142332884	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:212,86:0.29:298
chr11	118209960	rs2276424	A	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr11	118210106	rs2276423	G	C	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=0.407;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:14,65:0.82:79
chr11	118210424	rs67065773	TAC	T	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.926;QD=3.47;ReadPosRankSum=-2.852;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:181,61:0.25:242
chr11	118215075	rs150376137	AGGCT	A	1551.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr11	118221474	rs1561966	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr11	118223256	rs143129377	CA	C	803.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr11	118240361	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=1.98;ReadPosRankSum=2.334;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	118245971	.	CTG	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.879;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr11	118255278	rs6589663	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr11	118257081	rs11216863	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	118263388	rs2276422	C	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr11	118279645	.	A	AAT	302.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr11	118301616	rs11288713	AT	A	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.644;QD=10.05;ReadPosRankSum=0.303;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr11	118309873	rs34166714	CA	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.307;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:72,30:0.29:102
chr11	118348963	rs9332786	G	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,35:0.31:112
chr11	118353037	rs59281381	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.645;QD=1.42;ReadPosRankSum=0.403;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr11	118362414	rs562780	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr11	118369265	.	TA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.291;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr11	118373018	.	AAT	A	53	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.54;NF=2;NR=0;PP=53;QD=31.5;SC=GTTACCTATAAATATATATAT;SbPval=1.0;Source=Platypus;TC=12;TCF=8;TCR=4;TR=2;WE=118373027;WS=118373008;set=Platypus	GT:AD:AF:DP	1/0:10,2:0.17:12
chr11	118374581	.	G	A	3528.77	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:67,159:0.70:226
chr11	118403205	rs7933243	T	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:171,92:0.35:263
chr11	118404196	rs7129371	A	C	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	118404910	rs114968068	T	C	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.279;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:231,77:0.25:308
chr11	118405068	rs12289253	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.101;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:129,49:0.28:178
chr11	118405305	rs45505501	G	A	2158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.241;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:340,137:0.29:477
chr11	118405343	rs512849	G	A	12076.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,471:1.00:472
chr11	118405377	rs45485302	C	A	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:251,105:0.29:356
chr11	118405437	rs45548238	CA	TG	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;JOINED;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr11	118405453	rs45474901	T	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr11	118406328	rs141837942	CAGTGTGGA	C	2385.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:232,75:0.24:307
chr11	118415847	rs3741320	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.776;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	118415847	.	GA	CC	112	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=112;QD=55.1559582874;SC=ATTCATGAGGGAACTTGGTTC;SbPval=0.65;Source=Platypus;TC=10;TCF=3;TCR=7;TR=3;WE=118415856;WS=118415837;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr11	118415848	rs3741319	A	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.81;ReadPosRankSum=1.408;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr11	118415931	rs368284513	CT	C	48.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr11	118415945	rs143782568	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.239;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	118416073	rs3825055	A	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:126,56:0.31:182
chr11	118416253	rs2277295	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.891;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr11	118416892	rs479208	G	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:46,97:0.68:143
chr11	118422868	rs2277293	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr11	118425051	rs56403966	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=1.051;QD=1.21;ReadPosRankSum=-0.200;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr11	118425063	rs55857590	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.219;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	118425419	rs2277292	G	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	118430519	rs11552421	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:190,101:0.35:291
chr11	118443063	rs375845726	GC	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=12.420;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.432;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr11	118444525	rs11216907	G	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.312;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:128,59:0.32:187
chr11	118451901	rs11216911	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-2.534;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr11	118454177	rs17842763	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	118471423	rs11216925	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.562;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:77,42:0.35:119
chr11	118471965	.	C	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=15.59;ReadPosRankSum=1.114;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr11	118471996	rs11216926	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.114;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr11	118472354	rs10892245	C	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.982;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:184,57:0.24:241
chr11	118499394	rs2236661	C	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=3.203;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr11	118502491	rs74426776	GC	G	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr11	118505676	rs58507527	GT	G	3418.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	118509668	rs483598	A	G	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.024;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:172,69:0.29:241
chr11	118514625	rs11216938	C	T	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-2.397;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:215,115:0.35:330
chr11	118518964	rs11314049	GC	G	679.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	118529017	rs6589669	T	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	118529044	rs11448549	C	CG	2393.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	118529069	rs6589670	G	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.61;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	118529078	rs6589671	G	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	118529127	rs7928371	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.720;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	118529937	rs80253351	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr11	118550380	rs116777245	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr11	118622744	rs6589689	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr11	118625609	rs580079	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr11	118626286	rs11217014	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr11	118627149	rs11217016	A	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.55;ReadPosRankSum=-0.388;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr11	118757191	rs1790192	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.119;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr11	118757201	rs3176908	C	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	118757219	rs1623316	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.063;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr11	118764298	rs11574669	C	G	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:109,173:0.61:282
chr11	118765267	rs598207	G	C	11037.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:229,509:0.69:738
chr11	118768466	rs35636302	C	CT	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=-1.372;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,47:0.48:97
chr11	118769442	rs7104819	A	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	118770321	rs11217083	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	118772160	rs61730467	G	A	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:309,176:0.36:485
chr11	118780476	rs75582144	C	T	5607.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:105,238:0.69:343
chr11	118781601	rs11376918	C	CA	16106.73	.	AC=2;AF=1.00;AN=2;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=31.34;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,514:1.00:514
chr11	118781638	rs11376919	C	CG	10609.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	118781655	rs11376920	C	CG	8896.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	118827777	rs143326552	C	T	11019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.300;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:283,523:0.65:806
chr11	118828942	rs623500	A	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr11	118842745	rs36158515	A	AG	11456.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	118842780	.	A	AG	6771.73	.	AC=2;AF=1.00;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	118850082	rs614245	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr11	118851138	rs4456264	C	T	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr11	118852081	rs4938606	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr11	118867803	rs4938618	G	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr11	118868842	rs58467585	A	AG	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	118869460	rs3737504	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.89;ReadPosRankSum=0.908;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	118872404	rs6589713	T	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.222;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:26,41:0.61:67
chr11	118882997	.	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr11	118885625	rs78716031	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	118888619	rs11602764	A	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr11	118888831	rs11820805	T	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:32,87:0.73:119
chr11	118889114	rs10892321	A	G	9029.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	118889396	rs72350455	G	GAGA	2116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.920;QD=26.46;ReadPosRankSum=1.521;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:26,54:0.68:80
chr11	118895635	rs35010541	G	A	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:103,195:0.65:298
chr11	118896130	rs74536648	GA	CG	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr11	118898435	rs56966114	AC	A	14419.73	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	118899218	rs4936459	C	T	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:32,80:0.71:112
chr11	118915757	rs11363127	TG	T	4070.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	118918537	rs7931970	G	A	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	118920453	rs673768	T	C	11794.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	118925374	rs35408224	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr11	118926720	rs470679	A	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	118927013	rs57740718	T	TC	5321.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	118938882	rs670526	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	118939939	rs5795166	T	TC	3250.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	118942638	rs1614264	A	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	118948167	rs370077572	A	G	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:30,79:0.72:109
chr11	118949277	rs36008744	C	G	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr11	118951724	rs7122226	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	118952173	rs15818	A	G	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr11	118952371	rs4614	A	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	118955882	.	CTTTTTTTTTTT	C,CT	1960.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;QD=38.45;SOR=4.133;set=HC	GT:AD:AF:DP	1/2:0,28,23:0.55,0.45:51
chr11	118959280	rs1144041	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr11	118959331	rs17075	G	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr11	118959732	rs549893	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr11	118962804	rs28990987	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr11	118962816	rs1784304	C	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr11	118963291	rs28990986	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr11	118963749	rs374148915	C	T	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:87,159:0.65:246
chr11	118967696	rs372629319	T	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:18,58:0.76:76
chr11	118967758	rs643788	T	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:29,97:0.77:126
chr11	118968959	rs10544271	TAG	T	1006.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr11	118970875	rs10892330	T	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.67;ReadPosRankSum=-0.361;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	118970878	rs603826	A	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.64;ReadPosRankSum=-0.574;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	118971251	rs649870	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr11	118973112	rs3825060	AA	GC	7973.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;JOINED;set=Intersection	GT:AD:AF:DP	0/1:126,204:0.62:330
chr11	118978411	rs7940073	G	C	354.80	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	118984287	rs4938630	A	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr11	118985151	rs595782	T	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr11	119003322	rs662069	C	A	17253.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr11	119004009	rs672189	G	T	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	119004026	rs537153	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	119004686	rs658922	T	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	119005088	rs512703	C	T	13994.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:2,535:1.00:537
chr11	119005132	rs100803	C	T	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	119024878	rs367951222	G	A	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:60,123:0.67:183
chr11	119028813	rs626776	C	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	119031841	rs11383101	G	GC	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	119043500	rs644252	T	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	119043656	rs643423	C	T	11089.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr11	119043745	rs561830	C	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr11	119052826	rs4245191	C	A	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	119054488	rs10790286	C	T	11346.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	119059404	rs1815811	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.106;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:191,79:0.29:270
chr11	119060009	.	C	T	550.77	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:87,35:0.29:122
chr11	119060963	rs45535039	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr11	119063908	rs2301574	C	T	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:87,154:0.64:241
chr11	119064529	rs201220955	C	T	11025.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:259,517:0.67:776
chr11	119065484	rs60630529	A	AC	10722.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.59;SOR=1.294;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	119065709	rs10750139	G	C	13318.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:2,516:1.00:518
chr11	119145463	.	G	GT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.089;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr11	119145705	rs3842642	G	GT	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:111,49:0.31:160
chr11	119146659	rs2511854	G	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	119148573	rs2510152	G	T	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	119155618	rs2298650	G	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr11	119158745	.	T	TA	87.73	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr11	119168916	rs2511858	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr11	119181170	rs2249466	T	C	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	119181432	.	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr11	119181674	rs2510146	G	C	25347.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,956:1.00:956
chr11	119184106	.	AT	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.351;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr11	119185133	rs6589731	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr11	119206375	rs2511841	G	A	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	119209979	rs9640	T	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr11	119212757	.	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:35,93:0.73:128
chr11	119213782	rs948411	A	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	119214771	rs948413	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr11	119215165	rs10790289	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:87,29:0.25:116
chr11	119215253	rs2509388	G	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.65;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	119215253	.	GCCC	CCCC,CCCT	227	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.48;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=34;MMLQ=24;MQ=60.0;NF=11,7;NR=13,3;PP=227,214;QD=10.9071338561;SC=CTGACGGAGGGCCCGGTTTGA;SbPval=0.52;Source=Platypus;TC=25;TCF=11;TCR=14;TR=24,10;WE=119215264;WS=119215243;set=Platypus	GT:AF:DP	0/1:0.96:25
chr11	119215256	rs10892350	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.522;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.983;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr11	119216231	rs2510143	A	G	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	119216867	rs139436396	G	C	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:89,207:0.70:296
chr11	119229374	rs7937208	T	C	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	119243612	rs4938649	T	C	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:104,191:0.65:295
chr11	119243912	rs79464246	C	T	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:94,177:0.65:271
chr11	119243957	rs138072155	G	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:135,86:0.39:221
chr11	119252151	rs565296	C	T	3124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.606;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:611,214:0.26:825
chr11	119252199	rs670906	T	G	17223.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr11	119252758	rs144051162	C	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	119290034	rs1054735	G	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:49,142:0.74:191
chr11	119291480	rs3138091	G	A	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:81,191:0.70:272
chr11	119291659	rs78928241	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:102,41:0.29:143
chr11	119291688	rs3751026	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	119508845	rs79178970	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:109,46:0.30:155
chr11	119509625	rs1022080	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr11	119510644	rs7940667	A	C	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:186,287:0.61:473
chr11	119545224	rs113705862	T	TG	472.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr11	119548698	rs2292293	T	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr11	119584506	rs4245205	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	119879255	rs609066	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr11	119879425	rs648374	T	C	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:25,78:0.76:103
chr11	119984202	rs506127	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	119984535	rs519672	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr11	119986167	rs503559	T	C	5343.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:114,252:0.69:366
chr11	119986175	rs61095798	G	C	3506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.633;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:256,103:0.29:359
chr11	119986179	rs2276160	G	T	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=1.185;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:255,102:0.29:357
chr11	119986181	rs56828071	GC	G	3465.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:246,101:0.29:347
chr11	119987576	rs488222	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	119987843	rs139060050	G	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr11	119987854	rs116216830	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr11	119989169	rs114030809	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr11	119992839	.	A	AGTGTGTGTGT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.606;QD=0.80;ReadPosRankSum=1.185;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr11	119992871	.	T	TGTGTGA,TGTGTGTGA	1240.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=84;set=Intersection	GT:AF:DP	0/1:0.64:70
chr11	119993576	rs60137137	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.339;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr11	119993897	rs66674912	CCT	C	22803.73	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:3,575:0.99:578
chr11	119996490	rs61753082	G	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.729;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:256,92:0.26:348
chr11	119999191	rs569044	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	120007889	rs470645	G	T	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	120040442	rs2444240	T	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr11	120040452	rs112907011	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr11	120099658	rs2508489	A	G	3080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-2.034;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:222,92:0.29:314
chr11	120099679	rs2508490	G	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:230,109:0.32:339
chr11	120099791	rs2465654	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:167,88:0.35:255
chr11	120107411	rs882856	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr11	120170259	rs142518390	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr11	120170477	rs12269875	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:40,81:0.67:121
chr11	120171807	rs148100266	A	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.785;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:89,39:0.30:128
chr11	120173087	rs150446508	C	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=2.058;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:206,61:0.23:267
chr11	120173243	rs7129256	G	A	375.81	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr11	120175749	rs7110845	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr11	120180291	rs77550935	G	A	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:94,148:0.61:242
chr11	120198093	rs1893261	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr11	120276903	rs61900795	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	120278359	rs6589812	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr11	120278688	rs7937612	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	120292366	rs113928738	C	T	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.014;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr11	120292570	rs532006	T	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	120300327	rs11217865	A	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr11	120310959	rs7108596	G	A	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:58,136:0.70:194
chr11	120310978	rs9666435	A	C	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr11	120312746	rs723937	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	120319064	rs2305008	A	C	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:57,126:0.69:183
chr11	120328858	rs766894	T	C	5054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.892;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:136,245:0.64:381
chr11	120330149	rs2305010	G	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	120331292	rs57250811	TA	T	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr11	120347886	rs111312404	T	TTGTTG	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr11	120348972	rs73584138	C	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:156,90:0.37:246
chr11	120349116	rs73584140	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr11	120349142	rs7120040	A	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr11	120355791	rs9625	G	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr11	120382409	rs7952113	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.264;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	120385829	rs114141957	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr11	120385841	rs2243746	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr11	120530973	rs6589829	C	T	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:106,201:0.65:307
chr11	120690372	rs56326825	T	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr11	120707383	rs10892628	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr11	120732508	rs3824978	C	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	120745874	rs2230297	C	T	6071.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.995;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.154;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-0.503;SOR=0.341;set=HC	GT:AD:AF:DP	1/1:1,245:1.00:246
chr11	120745967	rs3824977	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	120769382	rs57151589	AT	TC	15791.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	120769478	rs61409027	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr11	120776001	rs2156634	G	A	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	120823528	rs10750178	A	G	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	120837821	rs2276319	G	A	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr11	120852961	rs499804	C	A	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:114,176:0.61:290
chr11	120918134	rs151126871	TCA	T	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr11	120929037	rs77474753	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr11	120929197	rs3758891	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:149,72:0.33:221
chr11	120930947	rs12225989	C	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr11	120979841	rs114626100	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr11	120989335	rs612969	A	G	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:112,220:0.66:332
chr11	120996292	rs536069	A	G	12614.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:2,488:1.00:490
chr11	121000212	rs643744	T	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr11	121000784	rs586473	T	C	7528.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:163,344:0.68:507
chr11	121032978	rs526433	G	A	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr11	121033105	rs662496	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	121037268	rs7111480	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.134;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:62,24:0.28:86
chr11	121038600	rs114079991	T	C	390.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr11	121177477	.	G	A	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-2.193;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr11	121177486	rs7112214	G	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.306;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr11	121178302	rs1061332	A	C	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	121348741	.	CAA	C	172.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-0.489;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr11	121367626	rs12364988	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	121393212	rs630813	C	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	121403229	rs636588	T	C	9336.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	121403345	rs631232	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	121425851	rs77361418	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr11	121430103	rs11607597	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr11	121437819	rs1699107	C	G	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	121445084	rs1792126	T	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	121447807	rs1790212	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	121454149	rs73595277	C	G	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.372;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:88,49:0.36:137
chr11	121456962	rs1699102	C	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:82,57:0.41:139
chr11	121460846	rs2276412	C	T	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:62,115:0.65:177
chr11	121475798	rs1784929	T	A	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	121475922	rs3824968	T	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:66,117:0.64:183
chr11	121478958	rs2282649	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr11	121483401	rs1010159	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:161,63:0.28:224
chr11	121485499	rs12273171	T	A	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:86,49:0.36:135
chr11	121489416	rs1784933	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	121489563	rs17125548	G	A	4864.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:133,233:0.64:366
chr11	121491782	rs1792120	G	A	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	121493072	rs11454566	T	TA	490.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.572;QD=14.02;ReadPosRankSum=1.178;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr11	121495870	rs74811057	A	G	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:92,156:0.63:248
chr11	121498176	rs373420733	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr11	122022927	rs543412	C	T	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.702;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:163,70:0.30:233
chr11	122165766	rs532540	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:78,46:0.37:124
chr11	122172113	rs558962	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.495;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr11	122172318	rs615683	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.245;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr11	122172321	rs693194	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.504;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr11	122650172	rs4935813	C	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr11	122653689	rs12575062	C	A	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:68,148:0.69:216
chr11	122665437	rs872414	A	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.939;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr11	122667665	rs111571941	G	A	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:150,255:0.63:405
chr11	122680764	rs10604456	CTT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.22;ReadPosRankSum=-0.439;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	122709178	rs3134425	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:116,80:0.41:196
chr11	122724926	rs56074101	G	C	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	122738062	.	CAAA	C	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.41;ReadPosRankSum=0.163;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr11	122738896	.	ATGTGTGTG	A	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-0.282;QD=26.19;ReadPosRankSum=-1.085;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	122742154	rs56148911	C	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.198;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr11	122775227	rs3107630	T	C	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	122805910	rs4502006	C	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr11	122805948	rs113946401	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.258;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	122817187	.	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.637;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr11	122827152	rs75935183	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr11	122828264	.	CTTT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=1.006;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr11	122830214	rs7107502	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:24,79:0.77:103
chr11	122830274	rs1057704	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr11	122849816	rs7939002	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr11	122928622	rs4802	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=25.84;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	122928875	rs4936770	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=22.95;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	122928934	.	G	GAAA	1034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-0.531;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr11	122929201	rs77374206	G	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:324,123:0.28:447
chr11	122929407	rs1064585	T	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	122929624	rs1461496	A	G	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	122930108	rs76152311	T	TTG	12294.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	122930158	rs138432400	GTTAA	G	4936.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:51,125:0.71:176
chr11	122931075	rs149047184	A	AC	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr11	122931213	rs1461497	C	T	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	122931221	rs142689137	C	CGCCAGGT	1648.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:136,67:0.33:203
chr11	122931235	rs200633761	G	GC	4267.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:122,162:0.57:284
chr11	122931337	rs147610984	T	C	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:133,241:0.64:374
chr11	122931528	rs3057456	AAC	A	3092.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	122931625	rs41361350	G	A	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	122932123	rs10892958	C	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	122944081	rs149599709	C	CCT	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	122945373	rs147460789	CAG	C	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr11	122945602	rs200955566	ATATGT	A	3045.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:36,76:0.68:112
chr11	122945667	rs113357442	GT	G	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=1.408;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr11	122955143	rs143129921	A	ACCG	4907.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	123065584	rs115214371	C	A	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.256;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:242,82:0.25:324
chr11	123065730	rs11219061	C	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr11	123154816	rs12289554	A	T	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	123154894	rs149387350	TTC	T	1780.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.24;QD=34.92;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	123396618	.	C	T	249.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	123431391	rs71753637	CGTGTGTGT	C,CGTGT	2479.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=216;set=Intersection	GT:AF:DP	1/2:0.74,0.26:72
chr11	123464637	rs1148101	G	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	123474090	rs73029849	G	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:174,74:0.30:248
chr11	123475982	rs73029853	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr11	123477352	rs2279519	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr11	123479150	rs1148088	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr11	123485324	rs73029866	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr11	123485631	rs2306972	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,48:0.74:65
chr11	123489856	rs148264959	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr11	123504673	rs1148111	C	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	123504959	rs1148110	C	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	123508842	rs7112258	A	G	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	123596703	rs3183878	A	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr11	123597804	rs679597	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	123599020	rs11824818	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:68,121:0.64:189
chr11	123599044	rs675172	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr11	123600475	rs1144507	A	G	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	123624253	rs76499976	A	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,53:0.70:76
chr11	123624384	rs74789559	G	C	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:50,110:0.69:160
chr11	123624425	rs75836681	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr11	123624520	rs150562903	A	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr11	123753867	rs114749572	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.958;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:96,21:0.18:117
chr11	123753937	rs1939927	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	123754844	rs10893099	T	C	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	123755105	rs141474384	CAT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.482;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:111,13:0.10:124
chr11	123777049	rs10750249	G	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	123777280	rs149925482	A	G	2002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=2.091;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:258,121:0.32:379
chr11	123777497	rs10750250	G	A	8488.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	123777536	rs7926767	G	A	3837.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:118,172:0.59:290
chr11	123777986	rs7942047	T	C	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	123778031	rs7927385	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr11	123810745	rs116430791	G	T	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:100,187:0.65:287
chr11	123813835	rs114108710	C	T	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:55,115:0.68:170
chr11	123814584	rs113576980	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.445;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	123886307	rs79057843	C	T	8999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=3.485;QD=13.97;ReadPosRankSum=3.268;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:219,425:0.66:644
chr11	123886307	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=27;MQ=59.16;NF=115;NR=100;PP=2944;QD=20;SC=CTCGTGACAGCATTCATCCTC;SbPval=0.56;Source=Platypus;TC=306;TCF=161;TCR=145;TR=215;WE=123886316;WS=123886297;set=Platypus	GT:AD:AF:DP	0/1:91,215:0.70:306
chr11	123886308	rs11219407	A	G	24684.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=38.21;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,646:1.00:646
chr11	123886681	rs1893766	A	G	11611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=17.509;QD=15.61;ReadPosRankSum=9.258;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:205,539:0.72:744
chr11	123886717	rs503223	G	A	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=5.615;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-14.237;QD=2.00;ReadPosRankSum=-1.922;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:539,124:0.19:663
chr11	123886865	rs4084209	T	A	21545.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr11	123886984	rs4936880	A	G	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:124,240:0.66:364
chr11	123887164	rs4936881	A	C	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:140,197:0.58:337
chr11	123887184	rs4936882	T	G	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	123887314	rs517598	T	A	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.32;QD=23.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	123893745	rs79715120	C	T	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:364,173:0.32:537
chr11	123893969	rs140344214	G	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=-0.921;QD=7.34;ReadPosRankSum=0.055;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	123894136	rs28499345	A	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.29;QD=27.29;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	123894402	rs12221656	A	G	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-3.522;QD=4.72;ReadPosRankSum=-0.343;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:294,121:0.29:415
chr11	123894522	rs115910557	A	G	8801.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:236,421:0.64:657
chr11	123894698	rs111471584	A	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.641;QD=5.20;ReadPosRankSum=0.494;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr11	123900579	.	GTGTTCCCA	G	2665.73	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:207,80:0.28:287
chr11	123900841	rs142841328	A	G	10434.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:247,474:0.66:721
chr11	123900950	rs140855245	G	A	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:460,192:0.29:652
chr11	123901311	rs146648607	G	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:51,83:0.62:134
chr11	123908879	rs114086709	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr11	124006972	rs2276054	G	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:92,38:0.29:130
chr11	124006993	rs2276053	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr11	124007398	.	C	CCCTT	700.74	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:1,18:0.95:19
chr11	124015994	rs1056615	C	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:208,119:0.36:327
chr11	124016366	rs2282505	C	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr11	124016740	rs9326269	A	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr11	124029037	rs4936895	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr11	124029075	rs4935866	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr11	124029292	rs1893011	G	A	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:191,91:0.32:282
chr11	124029541	rs4936896	A	G	2931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.938;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:424,189:0.31:613
chr11	124056377	rs2512228	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.352;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:146,55:0.27:201
chr11	124056566	rs7937809	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:263,110:0.29:373
chr11	124056732	rs2512227	T	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:148,101:0.41:249
chr11	124056787	rs2512226	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:144,96:0.40:240
chr11	124086175	rs2508890	T	C	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	124095414	rs10893172	C	G	11004.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,427:1.00:429
chr11	124095525	rs11219508	T	C	10342.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	124095647	rs2466615	A	C	13997.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr11	124096122	rs7946182	G	A	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.01;QD=28.60;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	124096195	rs7946214	G	A	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	124096247	rs2466613	G	A	13965.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:1,540:1.00:541
chr11	124120302	rs2512239	A	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	124120821	rs12099154	T	C	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:124,249:0.67:373
chr11	124189028	rs141591138	C	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr11	124189306	rs2466620	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:216,113:0.34:329
chr11	124189729	rs2512219	C	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:127,54:0.30:181
chr11	124190137	rs2466621	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr11	124252422	rs503220	G	A	3710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=51.38;MQRankSum=-0.213;QD=14.96;ReadPosRankSum=-2.373;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:76,172:0.69:248
chr11	124252718	rs886201	G	A	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.500;MQ=50.25;MQRankSum=-0.036;QD=13.55;ReadPosRankSum=-0.158;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:44,72:0.62:116
chr11	124252750	rs886202	G	A	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=44.54;MQRankSum=-0.477;QD=14.57;ReadPosRankSum=-0.533;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:33,49:0.60:82
chr11	124252892	rs644147	A	G	4367.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:158,210:0.57:368
chr11	124253100	rs71491826	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-14.376;QD=1.60;ReadPosRankSum=1.392;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:331,75:0.18:406
chr11	124253147	rs530704	A	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:229,153:0.40:382
chr11	124253161	rs530740	G	A	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=4.727;QD=12.12;ReadPosRankSum=-1.929;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:234,128:0.35:362
chr11	124253170	rs530765	G	A	4072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=3.312;QD=11.87;ReadPosRankSum=-0.986;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:229,114:0.33:343
chr11	124253181	rs28373946	T	C	5161.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:70,241:0.77:311
chr11	124253333	rs645986	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	124266906	rs530992	C	T	4351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-0.168;QD=12.65;ReadPosRankSum=-1.084;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:136,208:0.60:344
chr11	124266912	rs28398895	A	G	12441.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;MQRankSum=7.078;QD=36.27;ReadPosRankSum=4.353;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:6,337:0.98:343
chr11	124267177	rs61910862	T	C	1373.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.91;MQRankSum=-2.273;QD=23.28;ReadPosRankSum=1.807;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr11	124267189	rs507335	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.85;QD=25.35;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	124294703	rs10750270	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr11	124310499	rs74383090	C	T	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:292,134:0.31:426
chr11	124412730	rs61745407	G	A	5463.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:180,263:0.59:443
chr11	124413248	rs61743599	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:111,56:0.34:167
chr11	124413261	rs61743861	A	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,59:0.36:164
chr11	124439883	rs1942660	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	124440617	rs12792184	C	T	8245.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	124441104	rs141387089	TTTCCTCTTCC	T	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=3.218;QD=9.57;ReadPosRankSum=-1.939;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	124494780	rs113773557	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.901;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr11	124494787	rs5795426	T	TA	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	124496623	rs58240213	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr11	124500761	rs2156162	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:204,84:0.29:288
chr11	124501921	rs2187152	A	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr11	124502260	rs1047661	A	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr11	124506967	rs7941327	C	T	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.120;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:214,70:0.25:284
chr11	124508345	rs2187155	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:78,27:0.26:105
chr11	124509499	rs149230460	C	CTCT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.474;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr11	124509689	rs78879979	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:169,80:0.32:249
chr11	124517121	rs3819084	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	124517222	rs142737112	G	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr11	124524533	rs7935148	G	A	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=2.305;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:187,70:0.27:257
chr11	124524627	rs1942663	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.626;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr11	124539446	rs79080743	G	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=9.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-2.039;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:92,53:0.37:145
chr11	124545110	rs55684404	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	124615382	rs189398190	C	T	3308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=2.815;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:413,200:0.33:613
chr11	124619780	.	A	AAAC	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=0.738;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr11	124621316	rs7125639	C	T	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:274,119:0.30:393
chr11	124622402	rs7102426	A	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr11	124623492	rs12541	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,61:0.36:168
chr11	124738653	.	C	T	5397.77	.	AC=1;AF=0.500;AN=2;DP=493;set=Intersection	GT:AD:AF:DP	0/1:222,260:0.54:482
chr11	124738944	.	C	T	3458.77	.	AC=1;AF=0.500;AN=2;DP=245;set=Intersection	GT:AD:AF:DP	0/1:78,157:0.67:235
chr11	124739325	rs34127060	G	GC	275.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=27.58;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr11	124739332	rs11219820	A	C	315.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=28.71;ReadPosRankSum=-0.230;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,9:0.82:11
chr11	124740410	rs3923890	A	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr11	124740691	rs7925879	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr11	124747333	rs10790713	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr11	124747837	rs7933204	G	A	14563.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr11	124749584	rs3802905	C	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.761;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:132,50:0.27:182
chr11	124750232	rs4366494	C	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	124750447	rs71859853	CCGGAGT	C	2082.73	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:214,67:0.24:281
chr11	124750553	rs12284882	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:76,27:0.26:103
chr11	124754859	rs369974490	T	A	6179.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:168,292:0.63:460
chr11	124756406	rs7104934	G	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:290,154:0.35:444
chr11	124757192	rs77854852	C	T	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:387,159:0.29:546
chr11	124757560	rs12418548	G	A	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.358;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:197,94:0.32:291
chr11	124757758	rs57713193	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr11	124757815	rs59771534	A	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr11	124763473	rs55852661	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr11	124763647	rs7927528	A	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.910;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:79,52:0.40:131
chr11	124763989	rs7928168	G	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr11	124764050	rs67478674	G	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr11	124765229	rs12421677	G	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	124765596	rs7935373	C	T	4175.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:98,191:0.66:289
chr11	124766128	rs4078313	A	G	13066.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	124766577	rs59694474	G	C	5479.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:121,254:0.68:375
chr11	124766591	rs4078483	C	G	13975.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	124767067	rs59648931	T	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:101,44:0.30:145
chr11	124767743	rs12287685	G	C	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.116;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:373,146:0.28:519
chr11	124789755	rs3802904	T	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	124791314	rs116102273	T	C	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	124792173	rs10893304	C	G	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	124792627	rs11826299	G	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:143,77:0.35:220
chr11	124793682	rs10790715	T	C	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	124856563	rs146292043	CTG	C	1040.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr11	124856951	rs4608089	C	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	124861269	rs4936967	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.72;ReadPosRankSum=-2.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	124946629	rs73625344	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:137,49:0.26:186
chr11	124946758	rs61912691	A	G	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:84,205:0.71:289
chr11	124947112	rs61912693	C	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr11	124949665	rs55889403	A	G	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.496;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:128,53:0.29:181
chr11	124951311	rs75801851	T	C	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-0.999;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:55,123:0.69:178
chr11	124951467	rs4396301	C	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr11	124954033	rs73625362	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr11	124954282	rs948270	A	G	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr11	124954369	rs948269	G	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr11	124954652	rs4936976	G	C	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	124954985	.	C	G	7553.77	.	AC=1;AF=0.500;AN=2;DP=555;set=Intersection	GT:AD:AF:DP	0/1:187,362:0.66:549
chr11	124955032	rs948268	T	C	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	124955977	rs3808995	C	T	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	124957803	rs7929462	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	124958122	rs3802808	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	124967487	rs1043821	T	A	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	124967678	rs3737350	A	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	124972114	rs7114520	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:228,89:0.28:317
chr11	124972208	rs14065	A	G	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	124972377	rs2155663	C	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	124972518	rs2155664	A	G	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	124972522	rs2155665	T	C	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	124972542	rs61450147	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:126,54:0.30:180
chr11	124972553	rs56295968	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:119,56:0.32:175
chr11	124972691	rs2155666	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	125003004	rs653552	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr11	125003115	.	G	C	505.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr11	125003127	rs60943855	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr11	125009529	rs11219919	G	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	125281576	rs78349043	C	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:231,124:0.35:355
chr11	125298871	rs595849	A	G	12869.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:1,496:1.00:497
chr11	125326058	rs679182	G	C	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:372,148:0.28:520
chr11	125326072	rs12290909	G	A	6600.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:131,304:0.70:435
chr11	125351472	rs597570	A	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.097;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr11	125365285	rs11220099	T	C	15944.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:2,605:1.00:607
chr11	125366454	rs11220101	A	G	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:124,194:0.61:318
chr11	125443325	rs145527014	CT	C	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr11	125443429	rs1284351	T	C	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.716;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,94:0.58:161
chr11	125443473	rs1284352	A	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:63,104:0.62:167
chr11	125443575	rs367941056	C	CTT	63	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	125445680	rs61493355	A	AT	894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.788;QD=8.44;ReadPosRankSum=1.583;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:37,69:0.65:106
chr11	125445899	rs144388380	C	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	125451304	rs78553920	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr11	125452094	.	C	CA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.727;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	125452221	rs71045107	C	CT	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=2.045;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:33,50:0.60:83
chr11	125452300	rs55912941	A	AC	7912.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	125452313	rs4627097	A	G	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,127:0.66:193
chr11	125462162	rs573173	A	G	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	125467144	rs513209	C	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=1.497;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr11	125472349	.	A	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.528;QD=2.23;ReadPosRankSum=-1.060;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr11	125481261	rs79410451	T	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.300;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:227,68:0.23:295
chr11	125488247	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.626;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr11	125490765	.	AT	A	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.766;QD=4.60;ReadPosRankSum=0.134;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:62,79:0.56:141
chr11	125525195	rs506504	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	125616379	rs76179820	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr11	125616483	rs498803	G	T	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	125616502	rs2553829	T	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	125616624	rs79529540	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr11	125617376	rs5795459	CT	C	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	125617610	rs2114084	A	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr11	125617691	rs12286611	C	G	2518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=1.046;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:51,123:0.71:174
chr11	125617866	rs12286795	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr11	125617908	rs2282539	G	A	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	125618709	.	TCA	T	354	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.9988;HP=8;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=0;NR=8;PP=354;QD=45.0;SC=CTAAAAAAAATCACACACACA;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=8;WE=125618718;WS=125618699;set=Platypus	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	125618728	rs35822751	CA	C	1438.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.96;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	125618730	rs374899259	CT	C	1438.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.96;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	125618731	.	T	C	291	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=2;MGOF=16;MMLQ=16;MQ=60.0;NF=10;NR=12;PP=291;QD=14.8077823885;SC=ACACACACACTACAGAAGAGG;SbPval=0.6;Source=Platypus;TC=22;TCF=10;TCR=12;TR=22;WE=125618739;WS=125618721;set=Platypus	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	125647712	rs522690	T	C	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	125647930	rs142659566	G	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr11	125648216	rs517463	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	125648503	rs494361	G	A	9568.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	125659278	rs12289651	C	T	3810.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:117,177:0.60:294
chr11	125659423	rs495869	A	C	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.739;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:129,58:0.31:187
chr11	125707761	rs11220236	A	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr11	125708198	rs10160391	C	T	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	125763566	rs141738016	TC	T	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.099;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr11	125763746	rs3088241	C	G	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-1.023;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:310,138:0.31:448
chr11	125766044	rs549990	C	A	10787.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	125766153	rs12274443	G	A	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:72,173:0.71:245
chr11	125766173	rs622756	A	C	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	125766204	rs600761	G	C	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.202;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr11	125766207	rs471980	C	T	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.572;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:119,43:0.27:162
chr11	125769354	rs667782	T	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.493;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:196,70:0.26:266
chr11	125769536	rs78786765	G	T	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:115,218:0.65:333
chr11	125776216	rs34692223	A	ATT,AT	449.74	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=35;set=Intersection	GT:AF:DP	0/1:0.86:22
chr11	125776259	rs681416	G	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	125778074	rs5795465	AT	A	1803.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:4,95:0.96:99
chr11	125780194	rs2272104	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	125788678	rs683155	T	C	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	125791017	rs635819	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	125812901	rs11825593	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:176,75:0.30:251
chr11	125830970	rs684535	A	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	125831407	rs78986535	T	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.755;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr11	125848261	rs3740904	C	T	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.979;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:293,107:0.27:400
chr11	125848419	rs636641	A	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr11	125850881	rs611548	C	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr11	125851055	rs564214	A	G	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:65,142:0.69:207
chr11	125851181	rs684805	G	A	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,111:0.57:194
chr11	125851300	rs624070	T	C	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	125859790	rs74854694	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	125867053	rs11220309	G	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	125871554	rs12274729	C	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr11	125871715	rs12274923	G	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.489;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:51,57:0.53:108
chr11	125871735	rs516664	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.694;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr11	125873639	rs512761	G	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr11	125891103	rs3832751	C	CA	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr11	125891269	rs3740912	C	T	8894.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	126045822	rs560813	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:110,57:0.34:167
chr11	126073449	rs35662702	C	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:216,98:0.31:314
chr11	126074192	rs2276312	A	G	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr11	126079647	rs79194001	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.695;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	126080757	rs608367	T	C	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	126081336	rs587891	T	C	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	126081403	rs2282580	T	C	9750.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	126134698	rs638766	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	126136549	rs79296801	G	A	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:306,146:0.32:452
chr11	126139100	rs1786702	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	126139313	rs1786703	T	A	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	126145477	rs188022599	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-2.551;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	126145931	rs2276025	T	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,43:0.32:133
chr11	126146244	rs56321210	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	126147713	rs594318	C	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr11	126160687	rs1893352	A	G	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.500;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:231,95:0.29:326
chr11	126161464	rs8177372	T	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:104,68:0.40:172
chr11	126161490	rs614700	T	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	126163124	rs609634	C	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	126163691	rs611953	A	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	126164349	rs625413	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	126174164	rs695029	C	T	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:76,203:0.73:279
chr11	126176578	rs637462	G	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	126201451	rs142577432	T	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.171;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:30,49:0.62:79
chr11	126208378	rs7115672	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr11	126213395	rs240536	T	C	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	126275960	rs10893506	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.485;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:212,102:0.32:314
chr11	126277216	rs2230278	C	T	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.012;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:284,139:0.33:423
chr11	126278075	rs2230279	C	T	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:337,146:0.30:483
chr11	126279365	rs1316361	A	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr11	126283785	rs2236653	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	126294464	rs3212318	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr11	126294817	rs948052	G	A	10660.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	126301481	rs3802817	T	A	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:24,66:0.73:90
chr11	126305279	rs4937132	C	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:60,103:0.63:163
chr11	126310082	rs878830	A	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	126315024	rs3802819	T	C	5649.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:162,277:0.63:439
chr11	126316772	rs114378922	C	T	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:356,137:0.28:493
chr11	126343135	rs12786235	A	C	6072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=-1.226;SOR=0.436;set=HC	GT:AD:AF:DP	1/1:1,231:1.00:232
chr11	126391297	rs12269776	T	G	4100.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:125,199:0.61:324
chr11	126391409	rs4606486	A	G	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:43,118:0.73:161
chr11	126391450	rs3839943	GC	G	2528.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:20,77:0.79:97
chr11	126396674	rs674537	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr11	126526181	rs523249	A	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	126551575	rs76313656	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr11	126858392	rs670637	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.08;ReadPosRankSum=-1.593;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	126858406	rs634171	A	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.16;ReadPosRankSum=1.097;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	126858484	rs558276	T	C	104.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	126873226	rs7115473	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr11	126873592	rs494442	C	T	7702.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:201,365:0.64:566
chr11	126873721	rs11377295	G	GC	8356.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	128333503	rs2230004	T	C	10732.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr11	128333593	rs114053667	G	A	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:139,251:0.64:390
chr11	128638216	rs35044982	TG	T	7429.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	128642979	rs12418597	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	128651893	rs35195224	A	G	19147.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=0.055;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:2,781:1.00:783
chr11	128652012	rs639336	G	T	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	128652053	rs3216814	A	AG	3521.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	128675292	rs7113191	T	A	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:96,182:0.65:278
chr11	128675401	rs7127621	C	T	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:81,129:0.61:210
chr11	128677227	rs372859921	CAT	C	3594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.688;QD=26.63;ReadPosRankSum=3.911;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:42,93:0.69:135
chr11	128679005	rs75686963	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,70:0.64:110
chr11	128679211	rs630797	G	C	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:69,130:0.65:199
chr11	128773413	rs4937387	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:133,51:0.28:184
chr11	128781339	rs6590357	T	C	16216.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr11	128781978	rs7118824	T	G	17906.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	128782002	rs7118833	T	C	8893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=0.102;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:2,348:0.99:350
chr11	128782012	rs7102584	C	G	13783.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	128786139	rs61176061	A	AGATGGATGGATG,AGATGGATGGATGGATG	1301.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.47;QD=50.07;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:0,19,7:0.73,0.27:26
chr11	128786294	rs4937391	G	A	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	128804789	rs2155548	C	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	128805069	rs116397612	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	128805548	rs11601431	G	A	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-1.917;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr11	128805557	rs56235610	T	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=-1.105;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr11	128839522	rs61746237	C	T	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:110,200:0.65:310
chr11	128842873	rs581258	T	C	9150.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	128993224	rs145776868	T	TA	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	129312660	rs3827487	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr11	129722512	rs115605173	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:28,88:0.76:116
chr11	129722553	rs558813	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	129740255	rs57667407	A	AT	123.70	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	129743012	rs1650826	A	G	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	129744252	rs1030467	T	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.498;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:122,51:0.29:173
chr11	129744872	rs1016364	A	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	129753940	rs75298673	C	T	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:241,146:0.38:387
chr11	129754103	rs3214551	T	TG	6524.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	129754644	rs1131972	A	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	129755669	rs1783914	G	A	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	129758242	.	AGATGCTGGTTACAAGCT	A	283.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr11	129758327	rs1650823	G	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	129772309	rs12275633	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:157,78:0.33:235
chr11	129775542	rs79404802	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.953;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:120,47:0.28:167
chr11	129784456	rs2241575	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:95,45:0.32:140
chr11	129785816	rs10561615	AAACT	A	641.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr11	129793305	rs2241573	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr11	129794950	rs2241571	T	C	11768.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:2,464:1.00:466
chr11	129801043	rs2277033	C	T	5664.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	129801124	rs2277032	T	C	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=1.004;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:159,69:0.30:228
chr11	129814543	rs73016891	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr11	129816991	rs34161604	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	129939826	rs80070284	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=2.196;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr11	129940456	rs113079288	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.58;ReadPosRankSum=-1.073;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	129940728	rs73023487	CG	TC	8250.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	129940743	rs79537552	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:105,60:0.36:165
chr11	129980685	rs59834300	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	129991646	.	GGAAGAT	G	1629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=6.470;MLEAC=1;MLEAF=0.500;MQ=62.30;MQRankSum=4.748;QD=16.80;ReadPosRankSum=1.408;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:46,51:0.53:97
chr11	129998900	rs651935	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	130011597	rs7934366	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	130011795	rs12281492	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.554;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr11	130013187	rs76525368	C	G	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.584;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:124,71:0.36:195
chr11	130057992	rs55833552	C	T	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:60,120:0.67:180
chr11	130058047	rs62642510	A	G	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:93,205:0.69:298
chr11	130058190	rs7103244	T	C	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr11	130058935	rs76803199	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr11	130059816	rs55716834	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr11	130060512	rs79231580	G	A	8493.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:211,399:0.65:610
chr11	130060554	rs144170468	C	T	6367.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:163,301:0.65:464
chr11	130060612	rs858704	A	G	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	130064223	rs610005	A	G	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	130064647	rs597661	G	A	12490.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=26.19;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr11	130064705	rs597576	A	G	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	130064746	.	C	CGT,CGTGT	1537.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=83;set=Intersection	GT:AF:DP	1/2:0.30,0.63:46
chr11	130064747	rs7113578	A	G	3001.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	130066372	rs858713	G	A	11206.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:1,416:1.00:417
chr11	130066452	rs11368852	G	GC	6263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.490;QD=6.69;ReadPosRankSum=2.009;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:637,299:0.32:936
chr11	130067892	rs858715	C	T	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr11	130067987	rs595073	A	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr11	130069790	rs613501	T	G	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	130078176	rs111397285	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr11	130105871	.	A	G	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.91;ReadPosRankSum=-0.788;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr11	130130742	rs114252073	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:43,81:0.65:124
chr11	130270855	rs59317921	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr11	130271647	rs747249	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	130271906	rs66785877	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr11	130275372	rs77872571	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	130276077	rs7930976	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:150,86:0.36:236
chr11	130281181	rs2291346	A	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr11	130281488	rs2131535	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:213,97:0.31:310
chr11	130284344	rs7106106	T	C	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr11	130289117	rs2291348	T	C	5144.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:102,233:0.70:335
chr11	130297957	rs7942034	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	130298202	rs184134198	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.293;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:78,31:0.28:109
chr11	130332338	rs11604959	A	G	7644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.306;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:213,361:0.63:574
chr11	130339108	rs76353149	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr11	130339312	rs731446	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	130731518	rs202084321	CCTT	C	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr11	130748227	rs11222372	C	G	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:75,155:0.67:230
chr11	130749715	rs2282528	A	G	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:71,154:0.68:225
chr11	130750642	rs2298566	A	C	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,136:0.64:211
chr11	130773076	rs3751039	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:123,45:0.27:168
chr11	130775688	rs3198419	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr11	130775782	rs1865298	C	T	12918.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr11	130776524	rs4414223	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr11	130776613	rs4373936	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.486;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:153,45:0.23:198
chr11	130776646	rs4586174	T	A	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	130776690	rs6590536	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.212;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:133,27:0.17:160
chr11	130776701	rs6590537	A	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.823;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:123,26:0.17:149
chr11	130780015	rs1781	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:106,55:0.34:161
chr11	130780225	rs681982	C	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	130780270	rs1237478	C	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	130784067	rs7128368	T	C	4225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.586;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:112,201:0.64:313
chr11	130784754	rs3751037	C	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:106,65:0.38:171
chr11	130784971	rs3751036	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	130785852	rs139042752	G	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.561;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:173,49:0.22:222
chr11	131530083	rs2472253	G	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	131531000	rs2739287	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	131531015	rs2658857	T	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	132177633	rs2305271	A	C	9187.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	132812623	rs147191949	C	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr11	132812786	rs145368132	A	AGGGGCTC	8583.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:160,208:0.57:368
chr11	133328989	rs77144140	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr11	133712348	rs2257010	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr11	133712473	rs2257004	C	T	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	133712594	rs2282601	C	G	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	133714522	rs2282602	G	A	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr11	133714672	rs2282604	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	133715153	rs2298738	G	C	5633.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.276;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:2,216:0.99:218
chr11	133788869	rs10791338	A	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:123,60:0.33:183
chr11	133789013	.	CG	C,CGGGG	204.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=77;set=Intersection	GT:AF:DP	0/1:0.36:33
chr11	133792021	rs596430	T	C	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.070;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:223,86:0.28:309
chr11	133794599	rs329670	TG	CT	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;JOINED;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr11	133800773	rs12796441	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-0.269;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	133800775	rs11223628	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.165;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr11	133801262	rs329671	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr11	133805440	rs139927942	AGCCT	A	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr11	133805585	rs329637	C	T	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr11	133807819	rs329635	G	A	9359.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr11	133814191	rs595986	A	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	133940173	rs646763	G	C	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.111;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:69,41:0.37:110
chr11	133940197	rs35590990	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr11	134009860	rs2276266	T	C	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-1.411;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:216,105:0.33:321
chr11	134010722	rs646998	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	134014673	rs3216140	C	CCT	3319.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	134016011	rs11223714	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr11	134018656	rs610382	T	C	7812.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:3,308:0.99:311
chr11	134018849	.	T	TC	1253.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=4.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.86;ReadPosRankSum=0.028;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr11	134018850	.	A	ACAC	1691.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.78;ReadPosRankSum=1.419;SOR=2.581;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr11	134018980	rs12795060	G	A	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.002;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:282,111:0.28:393
chr11	134030092	rs78438391	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr11	134031836	rs3214800	C	CAA	473.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	134038674	rs77904794	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	134047243	rs2276265	T	C	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	134050868	rs3737446	C	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.153;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr11	134054705	rs10591322	TACACAC	T,TAC	3615.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=112;set=Intersection	GT:AF:DP	1/2:0.19,0.81:78
chr11	134054711	rs80025556	C	T	1227.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr11	134054713	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.176;QD=1.43;ReadPosRankSum=0.183;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr11	134064674	rs80057266	A	C	6093.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:130,293:0.69:423
chr11	134064675	rs12573858	G	T	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.984;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:293,131:0.31:424
chr11	134074189	rs139571942	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	134093522	rs112549173	G	A	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,96:0.78:123
chr11	134093724	rs12803807	T	C	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:100,68:0.40:168
chr11	134093888	rs11607699	G	C	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:394,196:0.33:590
chr11	134105030	rs1259022	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr11	134112889	rs111751907	GGTGA	G	2206.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr11	134118382	rs369813830	C	CA	2549.27	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:29,150:0.84:179
chr11	134119820	rs12799304	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr11	134120325	rs60169309	A	G	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:67,137:0.67:204
chr11	134129186	rs7950471	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr11	134129439	.	T	C	209	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=10;NR=2;PP=209;QD=20.3142677123;SC=CCCAGTGGTGTTCCCAGACGC;SbPval=0.61;Source=Platypus;TC=18;TCF=15;TCR=3;TR=12;WE=134129447;WS=134129429;set=Platypus	GT:AD:AF:DP	1/0:6,12:0.67:18
chr11	134130808	rs74971988	C	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	134130870	rs74891173	C	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:36,87:0.71:123
chr11	134130887	rs77052364	G	A	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:48,109:0.69:157
chr11	134130917	rs75844584	G	A	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:77,170:0.69:247
chr11	134131080	rs77368661	T	C	6477.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:123,282:0.70:405
chr11	134131422	rs79032586	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr11	134131450	rs112142020	C	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:29,70:0.71:99
chr11	134132261	rs75688384	A	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr11	134132392	rs111405246	T	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr11	134132528	rs75333832	C	T	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:115,194:0.63:309
chr11	134132680	rs71486998	G	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr11	134132704	rs71486999	C	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr11	134151975	rs472287	G	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	134152030	rs10791352	G	A	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr11	134162922	.	A	G	346.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr11	134175182	.	T	C	295.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr11	134176941	rs190270336	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr11	134177275	rs2510356	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	134180695	rs526507	G	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	134181101	rs1144218	T	C	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:255,128:0.33:383
chr11	134182135	rs751719	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	134182375	rs2509062	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	134182441	.	G	A	727.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr11	134182856	rs1144216	A	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	134183450	rs1144215	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr11	134183850	rs11606923	T	C	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:191,69:0.27:260
chr11	134184141	rs1144214	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	134188542	rs481252	T	C	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.461;QD=5.01;ReadPosRankSum=-1.694;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:162,75:0.32:237
chr11	134188851	rs5795879	A	AT	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=1.254;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:23,65:0.74:88
chr11	134201864	rs3098651	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	134201992	rs114706954	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:67,86:0.56:153
chr11	134226053	rs76255106	C	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr11	134226291	rs3802929	A	G	3781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.976;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:70,178:0.72:248
chr11	134238518	rs78260611	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:181,74:0.29:255
chr11	134240142	rs10791358	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:150,74:0.33:224
chr11	134241094	rs4937880	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	134251777	rs729687	C	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,28:0.27:102
chr11	134856661	rs1971950	C	A	5132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.380;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.488;QD=13.06;ReadPosRankSum=-0.323;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:146,247:0.63:393
chr12	235022	rs12822449	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:84,99:0.54:183
chr12	235126	rs112633842	G	GC	1219.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr12	247923	rs75677829	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr12	248155	rs55923022	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr12	248202	rs56204927	C	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr12	250130	rs12321262	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	271022	rs12579600	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=1.282;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	271373	rs4980805	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	274572	rs11061700	G	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chr12	280569	rs16932134	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr12	284058	rs216230	T	C	18907.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.195;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=0.137;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,721:1.00:723
chr12	300287	rs629311	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:111,157:0.59:268
chr12	301843	rs646569	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	305254	rs533572	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	305468	rs143342777	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr12	310113	rs4980863	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	310901	rs216248	T	C	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	311816	rs216249	C	T	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	311898	rs74057611	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.830;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	311949	rs216250	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	312200	rs216251	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	313839	rs188610	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:154,179:0.54:333
chr12	319111	rs526690	T	C	10751.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	319125	rs557881	A	G	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	330193	rs61741313	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:104,68:0.40:172
chr12	330315	rs570680	T	G	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	333193	rs577294	C	T	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:173,217:0.56:390
chr12	351711	rs525797	T	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	416046	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=12.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.050;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr12	443372	rs79303687	G	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,66:0.43:154
chr12	461269	.	CAAAAAAA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=7.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.538;SOR=2.270;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr12	464254	rs3759371	T	C	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	495217	rs10774152	G	T	272.56	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr12	496439	rs7965303	A	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	498057	rs116581518	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.061;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr12	498267	.	CGGGG	C,CG	6218.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.179;QD=31.41;SOR=0.323;set=HC	GT:AD:AF:DP	1/2:5,69,124:0.35,0.63:198
chr12	498285	rs201074442	C	T	3168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.537;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:114,128:0.53:242
chr12	520947	rs4980895	A	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr12	537841	.	T	TA	33	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5032;HP=10;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=0;PP=33;QD=45.0;SC=ACAATTGTTTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=3;TCR=2;TR=1;WE=537849;WS=537831;set=Platypus	GT:AD:AF:DP	1/0:4,1:0.20:5
chr12	539984	rs55854088	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr12	540994	rs7310504	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr12	547683	rs735295	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr12	550911	rs34054482	CT	C	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.410;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:62,84:0.58:146
chr12	644337	rs2075033	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:132,152:0.54:284
chr12	653984	rs1008587	T	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr12	654427	rs57782477	A	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr12	655707	rs4980937	T	C	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.057;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:46,66:0.59:112
chr12	657404	rs11063529	G	A	10727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.719;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:315,505:0.62:820
chr12	658871	rs4980939	A	G	2799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.555;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:171,151:0.47:322
chr12	661458	.	TACACAC	T	132	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=4;MGOF=7;MMLQ=24;MQ=59.48;NF=8;NR=0;PP=132;QD=16.875;SC=TCCTGAGTACTACACACACAC;SbPval=1.0;Source=Platypus;TC=17;TCF=14;TCR=3;TR=8;WE=661471;WS=661448;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	661656	rs7298766	A	G	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:149,177:0.54:326
chr12	661772	rs7314430	G	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr12	662448	rs758790	T	C	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	662838	rs1056008	T	C	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:55,71:0.56:126
chr12	664494	rs71447498	G	A	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:200,223:0.53:423
chr12	665955	rs11063570	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:196,109:0.36:305
chr12	666943	rs7300933	A	G	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=1.365;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	668350	rs2072385	AC	CT	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	675441	rs4980836	T	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	719681	rs2535405	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	752327	rs6489690	C	A	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	752998	rs9669247	G	A,T	1721.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	1/2:0.43,0.57:65
chr12	772673	rs4980959	C	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	862641	rs3088353	T	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	862989	rs3168640	T	C	10154.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr12	863505	rs72647375	A	ACTT	2217.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr12	863517	rs3858703	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr12	923116	rs72648612	A	G	300.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr12	936468	rs2158502	C	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	939302	rs10774466	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr12	966459	rs72648671	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr12	968400	rs11064573	C	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr12	968489	rs2286006	T	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:59,98:0.62:157
chr12	970093	rs11286613	CT	C	362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.399;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr12	974137	rs11441896	C	CA	221.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.06;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	974326	rs11611231	G	C	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:318,177:0.36:495
chr12	974355	rs11441897	T	TC	11330.73	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:202,368:0.65:570
chr12	974404	rs7300829	T	C	15958.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,612:1.00:613
chr12	987482	rs1012729	G	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	987533	rs5795952	C	CT	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.550;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr12	988894	rs9804992	G	A	5191.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:231,257:0.53:488
chr12	990912	rs956868	A	C	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	993930	rs7300444	C	T	13812.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:3,537:0.99:540
chr12	994487	rs7955371	G	C	8604.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	995291	rs11450919	G	GT	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	998365	rs12828016	G	T	3938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.855;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:139,195:0.58:334
chr12	1003804	rs72650758	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:127,119:0.48:246
chr12	1005644	rs61736907	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr12	1006593	rs12305212	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	1009915	rs72650770	G	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr12	1017197	rs4766334	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	1022453	rs11571474	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=0.225;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	1022679	rs6413436	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr12	1035842	rs11571445	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	1035947	rs6489763	C	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	1040219	rs11571409	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	1041981	rs201398506	A	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	1041983	rs199628282	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	1041986	rs200633668	C	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.24;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	1041991	.	T	C	771.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1041992	.	A	G	771.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1041993	rs201451927	G	C	771.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1041996	rs113084521	A	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1221221	rs74679668	T	TAG	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	1313526	.	CTG	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.96;ReadPosRankSum=-0.328;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	1313732	rs7977526	T	C	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	1372114	rs2286031	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	1480914	rs141632116	T	C	39.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.96;ReadPosRankSum=1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	1553797	rs12319376	A	G	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:181,129:0.42:310
chr12	1589821	rs7315267	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.34;ReadPosRankSum=-0.686;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	1589868	rs111377772	T	TGAA	744.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr12	1589914	rs7315390	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr12	1703322	.	AGCCGCC	AGCC,A	527	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=36;MMLQ=23;MQ=59.59;NF=4,4;NR=13,13;PP=527,317;QD=31.4705882353;SC=GCTTCTCCCCAGCCGCCGCCG;SbPval=0.42;Source=Platypus;TC=26;TCF=5;TCR=21;TR=17,17;WE=1703335;WS=1703312;set=Platypus	GT:AF:DP	0/1:0.65:26
chr12	1748766	rs6489313	G	A	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	1748834	rs2270036	T	C	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	1863728	rs11061971	A	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	1889823	rs767870	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	1889920	rs10848575	T	A	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	1889921	rs2887630	T	A	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	1902766	rs2058111	T	G	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:149,128:0.46:277
chr12	1902929	rs80092457	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	1904726	rs3078853	G	GAC	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	1909664	rs142856742	C	CA	2242.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:75,105:0.58:180
chr12	1919543	rs2286377	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.83;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	1919553	rs2286376	C	T	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=1.206;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr12	1937511	rs10437823	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr12	1950011	rs58188909	A	AC	3989.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:97,118:0.55:215
chr12	1955664	rs7137553	G	T	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=-0.567;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:32,35:0.52:67
chr12	1955668	rs7138458	C	A	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=-0.291;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr12	1955890	rs7137876	T	C	5193.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:212,263:0.55:475
chr12	1955993	rs11062001	T	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr12	1965313	rs2286373	C	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:113,127:0.53:240
chr12	1969435	rs2370057	G	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr12	1969505	rs56110511	G	A	246.31	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr12	1983744	rs737102	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr12	1987442	rs34323075	TA	T	1071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.237;QD=12.76;ReadPosRankSum=0.639;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:50,34:0.40:84
chr12	1987605	rs79680317	C	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.065;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:37,48:0.56:85
chr12	1989018	rs60945277	T	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr12	1991971	rs55779143	A	G	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr12	1992265	rs79864920	G	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	1993337	rs2429184	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1995042	rs10774003	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr12	1995403	rs10735005	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	1996078	rs77739473	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	2016550	rs112521420	A	ATTGTC	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	2016811	rs146752695	CCTGGTGGGCGTGT	C	5470.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	2019322	rs8181786	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	2022411	rs1558142	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	2024274	rs73595519	C	A	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:350,176:0.33:526
chr12	2024316	rs758157	A	G	15085.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:1,579:1.00:580
chr12	2024433	rs112128847	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:82,59:0.42:141
chr12	2038978	rs79802812	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.771;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	2039022	rs66541354	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=1.911;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	2039690	rs2429172	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	2055266	rs7222	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	2058245	rs2240612	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	2062323	rs149912567	T	TTGC	6083.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:39,275:0.88:314
chr12	2077897	rs2470425	G	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	2102623	rs12813534	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	2107036	rs2302098	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.887;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	2113348	rs7298333	A	C	10474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-1.649;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:336,492:0.59:828
chr12	2602307	rs56412831	C	G	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:176,109:0.38:285
chr12	2613521	rs1008832	A	G	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr12	2659044	rs34277236	TG	T	8579.73	.	AC=1;AF=0.500;AN=2;DB;DP=533;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:276,255:0.48:531
chr12	2659082	rs11062272	G	T	7572.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:364,378:0.51:742
chr12	2659622	rs12304811	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr12	2659848	rs10848675	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	2659926	rs77367745	C	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	2676683	rs2370602	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	2706720	rs215983	G	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:96,94:0.49:190
chr12	2757756	rs2239127	T	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	2757769	rs2239128	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	2757782	rs2239129	C	T	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	2760708	rs216045	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=2.646;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:113,72:0.39:185
chr12	2760970	rs1990322	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr12	2773855	rs7315556	G	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	2774668	rs2302728	C	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	2774833	rs41276710	T	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:76,102:0.57:178
chr12	2778061	rs58893912	C	G	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr12	2783476	rs7136355	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	2788879	rs1051375	G	A	6589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.903;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:356,327:0.48:683
chr12	2791130	rs10848683	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	2791130	.	CGA	TGG	440	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=9;NR=1;PP=440;QD=49.3467874862;SC=AGGCACGTTCCGATGTGTGAG;SbPval=0.83;Source=Platypus;TC=12;TCF=10;TCR=2;TR=10;WE=2791140;WS=2791120;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr12	2791132	rs10774053	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	2791205	rs10774054	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	2794828	.	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-6.494;QD=5.73;ReadPosRankSum=0.174;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr12	2794842	rs201013634	T	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-6.397;QD=5.83;ReadPosRankSum=0.164;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr12	2794977	rs56270948	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:169,68:0.29:237
chr12	2795019	rs66611965	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-11.626;QD=2.04;ReadPosRankSum=-2.527;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:152,38:0.20:190
chr12	2795023	rs114036394	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,79:0.42:186
chr12	2795043	rs373603282	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.429;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=16.458;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-11.504;QD=0.78;ReadPosRankSum=-3.427;SOR=2.563;set=HC	GT:AD:AF:DP	0/1:125,19:0.13:144
chr12	2795255	rs2270373	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:127,63:0.33:190
chr12	2797713	rs199776761	G	A	5105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.553;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:353,273:0.44:626
chr12	2851185	rs12319038	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.35;QD=25.08;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	2851259	rs12319097	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	2851357	rs10774059	C	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.79;QD=44.18;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	2851365	rs4765989	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.94;QD=43.87;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	2876636	rs4313632	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr12	2904209	.	C	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-2.537;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	2905367	rs11062358	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:55,79:0.59:134
chr12	2909145	rs3021522	C	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:126,76:0.38:202
chr12	2910115	rs11275794	T	TTCCTTCCTAGA	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	2910237	rs11833878	C	G	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=0.319;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:82,79:0.49:161
chr12	2926543	rs2286604	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	2926556	rs2286603	C	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	2930269	rs2286602	C	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr12	2930645	rs61916645	C	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	2932177	rs2286601	G	A	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:54,92:0.63:146
chr12	2936276	rs3814249	A	G	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.565;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:41,53:0.56:94
chr12	2936526	rs36095731	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr12	2936630	rs12814675	T	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	2937013	rs4765998	G	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	2937298	rs11062370	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr12	2944024	rs35645225	G	C	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:180,142:0.44:322
chr12	2964124	rs115680621	A	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:146,102:0.41:248
chr12	2966098	rs7309114	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:128,83:0.39:211
chr12	2968169	rs3742076	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr12	2968458	rs2215292	T	C	10935.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr12	2973495	rs11548397	A	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:158,115:0.42:273
chr12	2973615	rs2072360	T	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,120:0.47:258
chr12	2977966	rs28990702	G	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	2983090	rs56249059	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	2983636	rs28990692	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:81,64:0.44:145
chr12	3018675	rs11305670	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.146;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr12	3127652	rs2159411	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:29,81:0.74:110
chr12	3129740	rs79909495	G	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.783;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr12	3130938	rs4759380	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	3149483	rs7294804	A	G	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:98,132:0.57:230
chr12	3310439	rs740776	C	T	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.729;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:92,110:0.54:202
chr12	3310482	rs740775	C	G	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr12	3315433	rs2058243	A	G	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	3387521	rs651196	C	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	3387555	rs651243	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr12	3387697	rs16930370	T	C	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:183,231:0.56:414
chr12	3387865	rs663134	C	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr12	3390804	rs605613	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	3391032	rs564247	T	G	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,110:0.60:183
chr12	3392351	rs632887	A	G	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:142,165:0.54:307
chr12	3409072	rs76244713	T	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:112,72:0.39:184
chr12	3409149	rs55979725	G	A	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:337,259:0.43:596
chr12	3409211	rs7305358	G	A	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:270,224:0.45:494
chr12	3409277	rs7306401	C	T	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	3490820	rs10848860	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	3600967	rs757609	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	3701464	rs34000611	G	A	4667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.758;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:165,231:0.58:396
chr12	3702219	rs4765741	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	3724444	rs11836052	T	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	3736734	rs10848893	C	T	10250.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr12	3736745	rs10848894	T	C	9605.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr12	3749874	rs7138453	T	C	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:104,132:0.56:236
chr12	3750070	rs4766151	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	3751046	rs7297853	T	C	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:113,120:0.52:233
chr12	3753975	rs7975304	T	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	3757548	rs887304	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	3757923	rs758530	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	3763688	rs12318855	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	3787956	rs242019	A	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	3788198	rs34088152	T	G	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:241,145:0.38:386
chr12	3948509	.	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=0.664;QD=8.09;ReadPosRankSum=-1.140;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr12	3948550	rs12319851	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	3948718	rs3809251	G	A	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	3950977	rs7295047	T	C	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	3982657	rs4766179	A	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	4430547	rs10774222	C	T	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	4537489	rs74851430	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.814;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	4553184	rs2241281	C	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:63,53:0.46:116
chr12	4553224	rs2970827	C	T	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:86,95:0.52:181
chr12	4553332	rs2241280	A	G	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:136,168:0.55:304
chr12	4553383	rs2241279	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:98,111:0.53:209
chr12	4554413	rs11611403	C	T	5007.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:187,234:0.56:421
chr12	4651026	rs201103510	G	GA	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr12	4671429	rs34206253	G	T	2850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-2.063;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:169,155:0.48:324
chr12	4671490	rs740059	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:143,144:0.50:287
chr12	4671611	rs7306848	CG	GA	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr12	4672096	rs7295624	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	4672394	rs7299185	T	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr12	4677255	rs2240766	T	C	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr12	4682418	rs3815360	T	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	4689963	.	A	AT	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.339;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:82,65:0.44:147
chr12	4697987	rs2041295	A	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.72;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	4697991	rs2041294	AT	GG	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	4700221	rs2302248	G	T	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr12	4700352	rs35827006	G	A	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr12	4702173	rs2240763	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.609;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr12	4708150	rs3741926	T	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	4708437	.	T	TTTTG	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-1.550;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr12	4713938	.	T	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=2;MGOF=163;MMLQ=24;MQ=58.09;NF=2;NR=0;PP=25;QD=29.8856062736;SC=GATGGTGTAATGGGAGTTCTA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=4713946;WS=4713928;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr12	4714008	rs2286576	T	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.88;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	4714008	.	TTGTCCTGGGG	GTGTCCTGGGA,GTGTCCTGGGG	328	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=10,23;NR=5,6;PP=214,328;QD=17.8311916575;SC=AACTGAGAAGTTGTCCTGGGG;SbPval=0.2;Source=Platypus;TC=29;TCF=23;TCR=6;TR=15,29;WE=4714026;WS=4713998;set=Platypus	GT:AF:DP	0/1:0.52:29
chr12	4714018	rs2286575	G	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.609;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr12	4716513	rs2255588	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr12	4716572	rs997373	C	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr12	4725134	rs7301885	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	4735734	rs2072359	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr12	4735894	rs2072357	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr12	4736086	rs1990313	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr12	4736495	rs1990312	C	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	4736631	rs11063265	A	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	4736677	rs11063266	G	C	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	4736690	rs10774251	A	G	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	4737318	rs7960207	A	G	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:105,146:0.58:251
chr12	4737459	rs2072356	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr12	4737715	rs2072355	C	T	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:112,104:0.48:216
chr12	4740324	rs12580890	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	4740515	rs11063270	A	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:133,80:0.38:213
chr12	4758188	rs714621	G	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr12	4762871	.	C	CT	69.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.000;QD=3.49;ReadPosRankSum=-1.311;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	4768354	rs7972657	A	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	4768437	rs7958182	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	4768504	rs4147683	C	T	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	4779087	rs1009633	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	4830000	rs10849133	T	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	4835813	rs35478697	A	G	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:118,175:0.60:293
chr12	4835882	rs2286578	T	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:124,82:0.40:206
chr12	4853915	rs12312983	T	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=1.335;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr12	4870363	rs2191157	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,37:0.33:112
chr12	4873163	rs1468556	G	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:99,81:0.45:180
chr12	4877689	rs73038876	C	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr12	4881766	rs2286581	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.71;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	4881775	rs2286582	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.74;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	4919267	rs758534	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr12	4959874	rs10774275	T	C	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	4959904	rs34855288	G	GA	5298.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	4959987	rs10774276	C	T	12091.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=43.65;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	4959993	rs3168377	C	A	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=44.33;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	4960023	rs14054	C	A	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	4960089	rs700480	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	4960117	rs12336	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	5021228	rs1048500	T	C	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:186,217:0.54:403
chr12	5021348	rs2227910	G	C	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	5021984	rs4766309	T	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	5022041	rs4766310	G	A	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.933;QD=10.57;ReadPosRankSum=-0.280;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:69,77:0.53:146
chr12	5153405	rs61737395	G	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr12	5154462	rs2359641	T	C	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr12	5603632	rs6332	G	A	8548.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:314,417:0.57:731
chr12	5687255	rs77487631	T	A	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	5721962	rs3741837	A	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	5722181	rs3741838	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr12	5744601	rs71581009	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr12	5756795	rs444834	T	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	5756824	rs367978	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	5756980	rs12825437	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-1.291;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr12	5757029	rs367206	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	5848963	rs57224730	ACT	A	1644.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr12	5848977	rs79853037	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:59,76:0.56:135
chr12	5849004	rs79278925	C	A	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.534;QD=10.75;ReadPosRankSum=0.537;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:94,111:0.54:205
chr12	5948898	rs76082116	T	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr12	5960986	rs74781946	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=2.985;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr12	5961048	rs7485945	G	A	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	5961174	rs116219908	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr12	6031755	rs113271594	T	TC	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	6032129	rs12817045	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=0.269;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	6032138	rs12817050	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.16;ReadPosRankSum=0.238;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	6054134	rs112956167	T	TA	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr12	6055132	rs6489682	T	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,46:0.52:88
chr12	6062853	rs3759320	C	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	6062878	rs3759321	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr12	6062894	rs57040304	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr12	6078616	rs2270239	T	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	6085353	.	G	A	3158.77	.	AC=1;AF=0.500;AN=2;DP=253;set=Intersection	GT:AD:AF:DP	0/1:99,152:0.61:251
chr12	6085513	rs216855	A	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	6091000	rs216867	A	G	7806.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	6092567	rs138350612	G	GGATAGATAGATA	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	6092629	.	TGATA	T	66	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=220;MMLQ=27;MQ=60.0;NF=0;NR=6;PP=66;QD=15.0;SC=GAGATAGATTTGATAGATAGA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=6092640;WS=6092619;set=Platypus	GT:AD:AF:DP	1/0:0,6:1.00:6
chr12	6094845	rs177702	G	A	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	6094989	rs116410139	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	6101310	rs111955751	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	6103072	rs2229446	C	T	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr12	6103281	rs11537642	A	T	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	6120958	rs56981471	G	A	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=51.80;MQRankSum=0.851;QD=7.98;ReadPosRankSum=-0.330;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	6121078	rs216305	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.45;QD=30.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	6121125	rs55804572	C	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=29.96;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	6121147	rs58238683	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.78;QD=28.94;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	6121220	rs55664929	C	T	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.35;QD=26.16;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	6122597	rs201000688	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	6122606	rs374274869	CT	C	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6125445	rs57349683	C	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	6127943	rs216310	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.63;QD=27.57;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	6128170	rs1800383	C	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr12	6128443	rs216311	T	C	5732.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	6128789	rs112026952	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr12	6128984	rs216312	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	6131161	rs16933969	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:82,110:0.57:192
chr12	6131234	rs148995386	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr12	6131250	rs116243373	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr12	6132790	rs113446850	T	G	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-7.996;QD=10.41;ReadPosRankSum=2.279;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:45,51:0.53:96
chr12	6132918	rs112634786	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=51.10;MQRankSum=-3.983;QD=1.10;ReadPosRankSum=-2.151;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr12	6132936	.	A	G	54	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=37;MMLQ=27;MQ=43.32;NF=3;NR=5;PP=54;QD=11.0964015684;SC=AGACATCCAGATATGGCTCGG;SbPval=0.64;Source=Platypus;TC=34;TCF=13;TCR=21;TR=8;WE=6132944;WS=6132926;set=Platypus	GT:AD:AF:DP	0/1:26,8:0.24:34
chr12	6134625	rs114018824	C	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	6134715	rs73051263	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.73;QD=24.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	6134949	rs56121649	C	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	6134987	rs56068059	C	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	6135265	rs34877178	C	T	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	6135337	rs3858686	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	6138410	rs11063999	T	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr12	6138595	rs1800380	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr12	6143984	rs216321	T	C	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	6144138	rs12810426	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr12	6144164	rs499648	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	6144169	rs669667	T	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	6145529	rs216325	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr12	6145649	rs57950734	A	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:96,113:0.54:209
chr12	6153514	rs1063857	A	G	5285.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:194,260:0.57:454
chr12	6153534	rs1063856	T	C	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:206,279:0.58:485
chr12	6153659	rs216293	G	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chr12	6153738	rs1558519	AC	GT	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	6153750	rs216294	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	6155950	rs2228317	C	T	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:124,157:0.56:281
chr12	6156146	rs76516907	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr12	6161963	rs10622633	G	GAGA	3863.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=44.41;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	6167196	rs1800379	A	G	2167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=2.318;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:71,104:0.59:175
chr12	6172348	rs2239159	C	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	6173433	rs1800377	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:151,115:0.43:266
chr12	6174414	rs1800376	T	G	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	6174423	rs1800375	T	A	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	6180582	rs2239156	A	T	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.986;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr12	6181635	rs55907031	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:111,83:0.43:194
chr12	6182828	rs1800387	A	T	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,124:0.54:229
chr12	6230288	rs6489694	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	6232426	rs2286608	G	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr12	6309598	rs11539945	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr12	6342241	rs11568262	G	A	2492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.980;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:346,161:0.32:507
chr12	6344600	rs2072372	C	A	13231.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:1,510:1.00:511
chr12	6352292	rs9668222	T	A	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	6421267	rs78697951	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr12	6421495	rs740842	G	A	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	6422272	rs10849440	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	6422329	rs76190992	G	A	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:118,254:0.68:372
chr12	6423030	rs71584804	GA	TT	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;JOINED;set=Intersection	GT:AD:AF:DP	0/1:41,101:0.71:142
chr12	6424577	rs1003563	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	6424695	rs73259246	T	C	9561.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:194,451:0.70:645
chr12	6426625	rs113672777	GC	G	12849.73	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:201,395:0.66:596
chr12	6426918	rs73259249	T	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr12	6428972	rs73259256	G	A	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:35,101:0.74:136
chr12	6435575	rs10849442	C	T	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:82,132:0.62:214
chr12	6437171	rs3067490	T	TGG	4304.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:50,114:0.70:164
chr12	6437389	rs4149651	T	C	12689.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:237,591:0.71:828
chr12	6439255	rs10849443	A	G	7411.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr12	6439470	rs12426675	A	G	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.774;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:236,79:0.25:315
chr12	6440009	rs1800693	T	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,72:0.61:119
chr12	6442346	rs1800692	A	G	10874.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	6450945	rs767455	T	C	6225.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:137,297:0.68:434
chr12	6457062	rs2228576	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	6457830	rs72657545	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	6457836	rs57233912	C	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	6458274	rs3764874	G	C	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:23,93:0.80:116
chr12	6459326	rs61918248	T	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	6463862	rs11614164	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	6464581	rs11542844	C	T	12908.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr12	6472511	rs114004764	G	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	6483463	rs3741914	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr12	6483839	.	C	T	7765.77	.	AC=1;AF=0.500;AN=2;DP=508;set=Intersection	GT:AD:AF:DP	0/1:158,343:0.68:501
chr12	6484073	rs114264117	G	A	5210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DB;DP=1186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.101;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:828,339:0.29:1167
chr12	6484709	rs10849447	T	C	12213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.38;ReadPosRankSum=-0.157;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:3,498:0.99:501
chr12	6486524	rs72645155	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.707;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr12	6486927	rs59148182	C	T	4473.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:107,212:0.66:319
chr12	6487025	rs148065366	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr12	6493901	rs2302256	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr12	6493911	rs2302255	C	T	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr12	6493942	rs41518946	TC	T	1152.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr12	6495070	rs4020662	C	CAA	380.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-0.535;QD=13.60;ReadPosRankSum=-0.182;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr12	6495275	rs2364480	C	A	14109.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:2,538:1.00:540
chr12	6495635	rs5796232	C	CA	2456.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:4,88:0.96:92
chr12	6499533	rs2286599	G	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=0.309;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr12	6499706	rs140135942	C	A	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr12	6500105	rs12354	T	G	11933.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr12	6551618	.	CAA	C	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=0.305;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr12	6560473	rs2532502	A	G	11209.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr12	6562753	rs2532501	A	G	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:131,253:0.66:384
chr12	6562810	rs2532500	A	G	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:64,109:0.63:173
chr12	6562823	rs2041387	C	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr12	6565750	rs10774432	A	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:36,115:0.76:151
chr12	6565876	rs60115620	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:19,67:0.78:86
chr12	6567541	.	T	TA	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.203;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr12	6567787	rs2243750	T	C	4593.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:109,213:0.66:322
chr12	6569983	rs2243977	C	T	9768.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:243,457:0.65:700
chr12	6570163	rs2534710	C	T	5117.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:72,212:0.75:284
chr12	6572048	rs1045452	A	G	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:131,199:0.60:330
chr12	6575191	rs2534718	A	T	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	6579565	rs2534720	A	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	6579757	rs2532489	T	C	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr12	6579812	rs2072376	T	C	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:54,139:0.72:193
chr12	6601743	rs1001127	A	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	6601980	rs4764600	C	G	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:100,210:0.68:310
chr12	6602217	rs11064230	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr12	6618871	rs7309414	C	T	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.704;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:301,121:0.29:422
chr12	6619054	rs7298053	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:121,41:0.25:162
chr12	6619081	rs144245376	TCTA	T	2498.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:20,63:0.76:83
chr12	6619284	rs714774	C	G	8453.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,333:0.99:335
chr12	6619402	rs714775	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:210,77:0.27:287
chr12	6620495	rs7358768	G	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=27.93;SOR=1.784;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	6620500	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.778;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr12	6623382	rs4764604	A	G	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=0.378;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:39,74:0.65:113
chr12	6623389	rs4764605	T	C	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.95;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	6624139	rs9788151	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,56:0.58:97
chr12	6626369	rs758739	G	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	6631169	rs917634	C	A	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	6631888	rs2072373	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr12	6632564	rs3076239	G	GTTTT	875.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;QD=35.03;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	6635567	rs7311174	A	T	24328.77	.	AC=2;AF=1.00;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	1/1:0,936:1.00:936
chr12	6637845	rs2072374	T	C	8928.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	6638116	rs740850	C	T	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:68,168:0.71:236
chr12	6638666	rs7316224	C	T	14205.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:269,664:0.71:933
chr12	6638893	rs74058622	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr12	6639088	rs1043262	A	G	12046.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr12	6639981	rs2240871	C	G	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.567;QD=3.24;ReadPosRankSum=0.878;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:349,110:0.24:459
chr12	6640267	rs10849485	G	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	6640677	rs1127198	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.000;QD=4.90;ReadPosRankSum=1.509;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	6643927	rs3741915	T	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:104,66:0.39:170
chr12	6644256	rs3741918	T	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	6646320	rs1065691	T	C	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.987;QD=5.59;ReadPosRankSum=-0.528;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:317,153:0.33:470
chr12	6647109	rs1803621	T	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.578;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:106,54:0.34:160
chr12	6657538	rs2286724	T	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr12	6659694	rs2286726	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr12	6660219	rs7312991	C	T	8470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.969;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:511,242:0.32:753
chr12	6660225	rs7301426	T	C	8476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.345;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:497,241:0.33:738
chr12	6669173	rs9804916	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr12	6671154	rs370604185	AT	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.496;QD=1.69;ReadPosRankSum=1.955;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr12	6696856	rs77543056	C	T	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,70:0.63:111
chr12	6697353	rs12310569	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr12	6707629	rs7310535	C	T	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr12	6710437	rs115269629	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr12	6711144	.	ATCC	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.173;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:239,20:0.08:259
chr12	6711147	rs1639122	C	A	5390.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:24,235:0.91:259
chr12	6747578	rs1882553	G	C	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,426:1.00:428
chr12	6749093	rs2365087	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	6756240	rs3803130	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	6762026	rs4764506	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	6764831	rs4764616	G	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	6777069	.	TTGCTGC	T,TTGC	3827.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=229;set=Intersection	GT:AF:DP	1/2:0.13,0.86:167
chr12	6804833	rs76737598	A	G	3315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=0.940;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:95,158:0.62:253
chr12	6804852	rs75669580	A	G	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.489;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:80,124:0.61:204
chr12	6804902	rs10849498	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	6835068	rs7487866	A	G	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	6835081	rs2365100	G	A	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	6836852	rs7138427	A	G	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	6836913	rs2178691	G	T	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	6839453	rs871365	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	6840126	.	TTC	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-1.333;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr12	6840209	rs3168600	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	6840371	rs11227	G	T	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	6861043	rs2302367	T	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr12	6879202	rs4764622	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr12	6879279	rs4764621	A	G	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=2.133;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:135,104:0.44:239
chr12	6883264	rs11064375	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	6883700	rs2365095	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr12	6884788	rs115113666	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:69,50:0.42:119
chr12	6887020	rs870849	T	C	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	6909380	rs3216776	TG	T	3422.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:70,100:0.59:170
chr12	6909388	rs2365568	A	G	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	6909442	rs2255301	T	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr12	6923286	rs10849523	C	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr12	6923462	rs11064416	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	6923831	rs11575098	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,65:0.63:103
chr12	6924122	rs28917504	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr12	6924993	rs116019487	T	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr12	6925294	rs11064419	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:209,137:0.40:346
chr12	6925313	rs10849525	G	T	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:183,129:0.41:312
chr12	6926363	rs1055141	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	6928075	rs12821756	T	C	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=25.59;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	6928124	.	GGGGA	G	1883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.500;MQ=63.20;MQRankSum=8.499;QD=16.24;ReadPosRankSum=0.418;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:62,54:0.47:116
chr12	6928135	rs55764611	T	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.09;QD=35.33;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	6928569	rs16932921	T	A	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	6928586	rs7136817	CA	AG	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	6933787	rs1051409	A	G	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:218,166:0.43:384
chr12	6934989	rs2071080	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	6935631	rs2071081	A	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr12	6938023	rs57050687	C	CG	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	6939850	rs10744716	A	G	9525.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	6939859	rs35359746	C	T	8952.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.33;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	6940254	rs7305463	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	6942672	rs4963513	A	C	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	6942823	rs4963512	A	G	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr12	6946247	rs1129646	G	T	12777.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,498:1.00:499
chr12	6946545	rs4963510	C	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	6950930	rs11288917	AT	A	1893.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr12	6954875	rs5443	C	T	11430.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:4,440:0.99:444
chr12	6955865	rs138991440	C	CCACA	1970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=4.206;QD=16.29;ReadPosRankSum=-0.551;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:68,53:0.44:121
chr12	6959095	rs367917525	AC	A	904.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr12	6965194	rs2226955	A	G	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr12	6965740	rs2238114	C	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	6965763	rs72181812	AAG	A	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr12	6965805	rs66621175	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	6968741	rs11064432	C	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:92,59:0.39:151
chr12	6969731	rs2071059	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr12	6976688	rs1800200	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr12	6979967	rs58194764	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-1.248;QD=11.98;ReadPosRankSum=1.069;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	6981442	rs146823015	G	A	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:342,232:0.40:574
chr12	7014962	rs2071071	A	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:4,85:0.96:89
chr12	7015465	rs377413397	TC	T	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr12	7015915	rs1007924	A	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	7016475	rs77386517	C	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr12	7022085	rs1057077	T	A	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:202,156:0.44:358
chr12	7023123	rs710415	A	G	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr12	7024871	rs116038031	C	T	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=1.063;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr12	7025763	rs2071074	G	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr12	7026066	rs189522110	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	7026307	rs2071417	G	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:48,69:0.59:117
chr12	7026893	rs376463507	A	AG	1550.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	7026932	rs2071419	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	7028609	rs11064465	T	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	7030660	rs115894573	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr12	7031659	rs3213435	G	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	7044647	rs367827860	A	AG	1256.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	7045879	.	CCAGCAA	C	2978	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=27;NF=76;NR=127;PP=2978;QD=20;SC=ACCATCACCACCAGCAACAGC;SbPval=0.45;Source=Platypus;TC=254;TCF=91;TCR=163;TR=203;WE=7045910;WS=7045869;set=Platypus	GT:AD:AF:DP	0/1:51,203:0.80:254
chr12	7045888	rs199920334	GCAA	G	6708.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.35;MQRankSum=1.644;QD=13.23;ReadPosRankSum=0.958;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:300,207:0.41:507
chr12	7045891	.	ACAGCAG	A	2449.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=658;set=Intersection	GT:AD:AF:DP	0/1:343,177:0.34:520
chr12	7045897	.	G	A	6776.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DP=652;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=1.551;QD=14.00;ReadPosRankSum=0.522;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:277,207:0.43:484
chr12	7045897	.	G	GCAA	2995	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=27;NF=75;NR=126;PP=2995;QD=20;SC=AGCAACAGCAGCAGCAGCAGC;SbPval=0.49;Source=Platypus;TC=249;TCF=92;TCR=157;TR=201;WE=7045910;WS=7045869;set=Platypus	GT:AD:AF:DP	0/1:48,201:0.81:249
chr12	7049999	rs2071076	C	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	7052560	rs188780454	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr12	7053085	rs3087835	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	7053121	rs112885868	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	7053149	rs1044189	A	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	7053362	rs915997	A	G	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	7053672	rs139938808	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr12	7053817	rs199730337	TGGGTCAGACGCGGGAAGGC	T	5046.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:114,133:0.54:247
chr12	7054859	rs2019743	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	7055860	rs2301262	T	C	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	7056065	rs145442518	G	GA	1573.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr12	7056071	rs74789997	C	A	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,42:0.40:106
chr12	7064297	rs147632060	A	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:163,102:0.38:265
chr12	7065281	rs10744724	C	T	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:156,148:0.49:304
chr12	7065406	rs7963446	G	A	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:94,134:0.59:228
chr12	7065576	rs2110071	G	A	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:152,190:0.56:342
chr12	7065635	rs2110072	T	C	9733.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr12	7069032	rs373449314	A	C	159.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.75;ReadPosRankSum=-0.319;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	7069422	.	T	TGGGC	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=10.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-2.648;SOR=1.995;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr12	7069425	rs28579154	G	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=1.537;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:47,58:0.55:105
chr12	7069620	rs759052	T	C	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:161,234:0.59:395
chr12	7069654	rs759053	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:97,126:0.57:223
chr12	7079215	rs7301709	T	G	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr12	7080210	rs60117710	A	AG	5531.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	7080212	rs17857448	T	C	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	7087711	rs56157656	T	C	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:135,82:0.38:217
chr12	7087930	.	T	TG	539.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr12	7090193	rs1984564	A	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr12	7090659	rs60570787	A	AG	2944.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	7091099	rs79256846	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr12	7091918	rs3764031	C	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.348;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:87,51:0.37:138
chr12	7169362	rs12311345	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	7171620	rs7965055	C	T	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:316,196:0.38:512
chr12	7172365	rs201513963	C	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	7173165	rs142481406	A	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:98,45:0.31:143
chr12	7175047	rs1143664	A	G	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.250;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr12	7187784	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.175;QD=0.41;ReadPosRankSum=1.277;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:130,26:0.17:156
chr12	7241599	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.884;QD=0.47;ReadPosRankSum=0.513;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr12	7242204	rs1126605	C	T	7129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=1.318;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:249,346:0.58:595
chr12	7242950	rs4332595	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	7242953	rs4505141	A	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	7244956	rs12422724	A	T	19476.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.47;ReadPosRankSum=2.104;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:2,436:1.00:438
chr12	7244962	rs12426834	T	G	19672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.14;ReadPosRankSum=1.672;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:2,454:1.00:456
chr12	7246581	rs56876910	T	TTG	632.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	7249598	rs3742089	T	C	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	7261607	rs375807151	TG	T	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	7274573	rs2290240	A	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	7277236	rs2290237	T	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:166,128:0.44:294
chr12	7281317	rs10963	C	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr12	7284301	rs2167285	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	7284340	rs113297706	C	CGCCTCCTA	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	7284484	rs10772466	A	C	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	7287886	rs6488452	A	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:132,63:0.32:195
chr12	7287914	rs2278822	C	T	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:206,116:0.36:322
chr12	7288734	rs2278823	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr12	7290352	.	A	ATGTG,ATGTGTG	77	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.4998,0.5002;HP=1;HapScore=3;MGOF=12;MMLQ=27;MQ=53.93;NF=6,6;NR=0,0;PP=28,77;QD=5.16666666667;SC=TTGGACTGGAATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=8;TCF=6;TCR=2;TR=6,6;WE=7290360;WS=7290351;set=Platypus	GT:AF:DP	0/1:0.75:8
chr12	7293796	rs2305341	C	G	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr12	7294657	.	GTT	G	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.566;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr12	7309471	rs1868799	C	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-1.037;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:78,53:0.40:131
chr12	7309471	.	CGG	AGC	1311	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=59.61;NF=4;NR=26;PP=1311;QD=45.4822624954;SC=CCAGACGTCCCGGAGCCCCAA;SbPval=0.94;Source=Platypus;TC=75;TCF=19;TCR=56;TR=30;WE=7309481;WS=7309461;set=Platypus	GT:AD:AF:DP	1/0:45,30:0.40:75
chr12	7309473	rs1868800	G	C	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-1.565;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:74,50:0.40:124
chr12	7351843	rs1839623	T	C	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	7362204	rs141721291	G	GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.09;QD=123.52;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	7463489	.	C	T	57	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=27;MQ=58.1;NF=0;NR=2;PP=57;QD=45.8856062736;SC=TAGCTGGGTGCGCTGGCTCAC;SbPval=1.0;Source=Platypus;TC=10;TCF=4;TCR=6;TR=2;WE=7463499;WS=7463479;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr12	7463491	rs7962994	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	7470534	rs7968312	A	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	7470566	rs7971931	T	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	7520771	rs7961164	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr12	7521563	.	TGAGA	T	66	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=1;NR=2;PP=66;QD=23.3333333333;SC=GCGACTGTCCTGAGAGAGAGA;SbPval=0.39;Source=Platypus;TC=13;TCF=2;TCR=11;TR=3;WE=7521574;WS=7521553;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr12	7522348	rs116546737	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	7525795	rs10845007	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	7527124	rs35480970	A	G	12101.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr12	7528471	rs7306824	G	A	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr12	7549009	rs4072797	C	T	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:196,122:0.38:318
chr12	7551022	rs6488268	A	T	15118.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr12	7551050	rs6488269	A	C	15749.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr12	7551222	rs7489145	G	C	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.097;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr12	7551307	rs7487128	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	7585247	rs58195891	T	C	14696.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr12	7586130	rs35193918	G	A	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:278,169:0.38:447
chr12	7591536	rs59581534	T	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:86,48:0.36:134
chr12	7592194	rs61748920	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr12	7596855	rs7954905	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr12	7633645	.	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.455;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr12	7639054	rs76573683	T	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr12	7640336	rs62622400	G	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:69,86:0.55:155
chr12	7648080	rs148210699	TG	T	539.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	7649484	rs4883263	T	C	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:116,192:0.62:308
chr12	7803562	rs10431308	C	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr12	7805236	rs2302515	C	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:49,72:0.60:121
chr12	7805467	rs2080127	C	T	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:115,101:0.47:216
chr12	7805508	rs112046539	CTTTT	C	1434.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.46;MQRankSum=5.960;QD=14.79;ReadPosRankSum=-0.784;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:50,47:0.48:97
chr12	7805511	.	TTTTTA	T	568.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr12	7818348	.	G	GACACAC	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.338;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	7818444	rs7294364	C	A	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	7843373	rs3815479	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	7864316	.	CTTTTTTTTTTTTT	C	990.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=45.032;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.224;QD=22.52;ReadPosRankSum=3.760;SOR=3.988;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr12	7867847	rs2024320	G	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:75,88:0.54:163
chr12	7868777	rs34619457	A	ATT	661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.63;ReadPosRankSum=-0.120;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr12	7868865	rs34547953	C	CTT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.56;ReadPosRankSum=-0.159;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	7894192	rs12823478	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.386;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	7898824	rs7134479	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	7899734	rs78447936	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=9.951;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.629;QD=4.89;ReadPosRankSum=1.123;SOR=3.334;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	7899802	rs144388075	A	T	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr12	7917936	rs12818448	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr12	7942472	rs12826131	AG	GA	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr12	7942514	rs12816791	C	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.530;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	7942556	rs12821889	G	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	7945829	rs4242903	G	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr12	7945871	rs11831829	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr12	7945906	rs11833344	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr12	7947017	rs1860931	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr12	7947304	rs4012939	T	C	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:258,146:0.36:404
chr12	7966908	rs3741856	T	C	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr12	7966958	rs10845981	C	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:233,127:0.35:360
chr12	7967071	rs11837392	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:85,117:0.58:202
chr12	7967135	rs11055945	T	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr12	7970331	rs3040823	C	CAA	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.376;QD=11.63;ReadPosRankSum=-0.912;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	7970335	.	A	AAAATATAGATAGATAGATAG	359	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=4;HapScore=2;MGOF=8;MMLQ=27;MQ=58.79;NF=2;NR=1;PP=359;QD=123.0;SC=CAGTCTCAAAAATATATATAT;SbPval=0.76;Source=Platypus;TC=13;TCF=8;TCR=5;TR=3;WE=7970344;WS=7970325;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr12	7970339	.	T	TAGATAGATAGATAGATAG	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=9.342;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.210;QD=21.67;ReadPosRankSum=-1.455;SOR=2.566;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr12	7970343	rs3040793	T	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.994;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=11.103;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.025;QD=17.71;ReadPosRankSum=-0.399;SOR=2.599;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr12	7970347	rs3040789	T	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.401;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.067;QD=16.16;ReadPosRankSum=-0.030;SOR=2.070;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr12	7970721	rs10845990	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	7980035	rs10846003	T	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.83;QD=25.65;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	7980178	rs59958086	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.235;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=9.309;MLEAC=1;MLEAF=0.500;MQ=49.60;MQRankSum=-6.441;QD=0.73;ReadPosRankSum=-2.815;SOR=1.847;set=HC	GT:AD:AF:DP	0/1:113,17:0.13:130
chr12	7980306	rs56049529	T	TA	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	7982753	rs71038781	CT	C	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.736;QD=9.62;ReadPosRankSum=-1.583;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr12	7984447	rs10772787	G	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=0.566;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr12	8043688	rs7297809	G	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	8074192	rs25684	G	A	2912.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.661;MLEAC=2;MLEAF=1.000;MQ=56.61;MQRankSum=4.919;QD=22.76;ReadPosRankSum=0.033;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:12,116:0.91:128
chr12	8082585	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=1.733;QD=2.12;ReadPosRankSum=2.209;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr12	8088766	rs2541281	T	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	8090271	rs11056574	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	8090317	rs56224202	CAA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.791;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	8090505	rs12321738	C	G	129.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	8090839	rs7309332	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	8195073	rs3759280	T	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	8196445	rs2277414	T	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	8205265	rs78896056	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr12	8234816	rs148161353	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr12	8234872	rs115269413	C	G	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:96,112:0.54:208
chr12	8235172	rs66928724	GT	G	1001.80	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:10,61:0.86:71
chr12	8244206	rs56693769	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	8286762	rs7315526	G	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr12	8287048	rs11043498	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr12	8288098	rs10840746	T	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	8289226	rs4322490	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	8289300	rs4573763	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	8374770	rs9668474	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	8509716	.	T	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.231;QD=7.67;ReadPosRankSum=0.591;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:89,66:0.43:155
chr12	8509721	.	G	A	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.205;QD=11.48;ReadPosRankSum=-0.703;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:63,86:0.58:149
chr12	8543143	rs4403873	T	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	8612336	rs10770736	G	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr12	8612481	rs12300621	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.18;ReadPosRankSum=-1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	8617976	rs7302011	A	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.68;ReadPosRankSum=0.578;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	8617982	rs7315873	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.68;ReadPosRankSum=0.150;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	8666378	rs11045985	C	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	8667897	rs4304840	A	G	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	8670978	rs74059866	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	8671909	rs12309351	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,98:0.62:158
chr12	8673699	rs12321431	T	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr12	8673984	rs7307664	G	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=-1.363;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	8673989	rs7138828	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=-1.291;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	8673995	rs11442181	C	CT	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.97;ReadPosRankSum=0.293;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	8693240	rs5014225	C	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.953;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	8693245	.	A	AC	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-1.131;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	8693333	rs4620776	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr12	8693418	rs11834597	T	C	189.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	8693419	rs145952293	T	TTCTC	229.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	8756791	rs11046349	T	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	8759445	rs2518144	C	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	8765447	rs1345004	T	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	8813345	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.976;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	8902470	rs61999314	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr12	8904484	rs16917746	C	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.374;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr12	8926011	rs2969089	T	C	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=35.09;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	8926011	.	TCTGC	CCTGC,CCTGT	962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=59.37;NF=68,32;NR=65,31;PP=962,926;QD=7.49452039509;SC=GTGGCATTGATCTGCTGATGA;SbPval=0.51;Source=Platypus;TC=134;TCF=69;TCR=65;TR=133,63;WE=8926023;WS=8926001;set=Platypus	GT:AF:DP	0/1:0.99:134
chr12	8926015	rs2302488	C	T	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.360;QD=9.65;ReadPosRankSum=-0.963;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:134,130:0.49:264
chr12	8982250	.	CA	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.429;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=8.228;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.851;QD=2.03;ReadPosRankSum=-0.231;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	8988403	rs4883188	A	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-2.155;QD=5.96;ReadPosRankSum=-1.150;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	8988777	rs1894814	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	8989077	.	CT	C	43.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.27;ReadPosRankSum=0.366;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr12	8997841	rs7300139	G	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	8997915	rs7301066	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:146,117:0.44:263
chr12	8998892	rs55906630	A	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	9002932	rs6487407	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9004512	rs1860927	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:127,73:0.36:200
chr12	9004892	rs1860926	C	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,86:0.41:211
chr12	9006594	rs140511652	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	9007225	rs6144605	GAGTTCTTCTGAGCTTC	G	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	9007492	.	AT	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.956;QD=5.10;ReadPosRankSum=2.212;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	9009731	rs78452682	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.204;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr12	9009999	rs3079157	T	TAA	1239.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr12	9010050	rs78428703	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr12	9010273	rs113352253	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:127,109:0.46:236
chr12	9016573	rs10219561	A	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr12	9020489	rs7308811	A	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:135,90:0.40:225
chr12	9020680	rs16917857	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr12	9020912	rs1476910	A	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:174,111:0.39:285
chr12	9021053	rs5796325	C	CGTGT	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr12	9021256	rs12816475	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.384;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr12	9021316	.	T	TAC	76	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=76;QD=43.0;SC=ATGGCGTGTATACACACACAC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=9021324;WS=9021306;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr12	9068472	rs10771204	G	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	9068813	rs7304121	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	9070366	rs4883198	T	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr12	9074259	rs1805741	C	T	3612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=0.444;QD=12.08;ReadPosRankSum=-0.136;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:135,164:0.55:299
chr12	9082855	rs1805778	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	9086683	rs1805735	A	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr12	9086898	rs1049925	A	G	4137.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:161,198:0.55:359
chr12	9087906	rs113120861	ATAG	A	949.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr12	9089406	rs376792409	GCAGCAGAAA	G	1599.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr12	9092425	.	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.79;MQRankSum=-7.653;QD=3.42;ReadPosRankSum=0.324;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:126,43:0.25:169
chr12	9094993	rs73238262	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr12	9095268	rs1805730	A	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	9097933	rs1805725	C	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	9161411	rs7302472	C	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9161765	rs7133355	A	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr12	9205540	rs2216143	T	A	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9220729	rs7955940	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	9227058	rs1805660	T	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	9227088	rs1805683	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	9230038	rs2377682	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	9230131	rs1805653	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	9230572	rs1805652	G	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	9232268	rs669	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr12	9242713	rs116658116	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr12	9242763	rs74061444	T	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	9243121	rs226411	C	G	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	9248233	rs226405	T	C	4947.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.166;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-0.869;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:1,198:0.99:199
chr12	9253712	rs74060552	G	A	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:103,124:0.55:227
chr12	9253894	rs226397	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	9256708	rs226390	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9259076	rs58537365	A	T	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=2.610;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:52,67:0.56:119
chr12	9260280	rs226388	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	9261860	rs79510570	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	9262727	rs226386	T	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9268473	rs226380	A	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	9268585	rs226379	T	C	128.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	9304028	rs73246354	A	G	75.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.16;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	9305473	rs10771357	T	C	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	9307373	rs2377741	T	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	9310565	rs4882981	C	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr12	9310576	rs10771364	T	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	9310959	rs7298673	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	9311265	rs3741850	A	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9313518	rs7972015	T	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.464;QD=14.28;ReadPosRankSum=2.164;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr12	9315209	rs10771381	A	G	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:89,165:0.65:254
chr12	9316773	rs3213831	T	C	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=2.501;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:65,96:0.60:161
chr12	9316907	rs1863839	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	9317784	rs2277413	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:175,74:0.30:249
chr12	9321475	rs34427370	T	C	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:78,120:0.61:198
chr12	9333749	rs919209	G	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr12	9334595	rs16918152	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr12	9334728	rs3832849	G	GAGTGAGACAAAATGGTCATA	1101.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr12	9344878	rs2075394	A	G	4601.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=7.567;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.12;ReadPosRankSum=-1.104;SOR=0.584;set=HC	GT:AD:AF:DP	1/1:5,203:0.98:208
chr12	9345273	rs10771407	A	G	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	9345408	rs2075395	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	9349370	rs11049396	C	CT	542.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr12	9352908	rs6487668	C	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	9446913	rs61916248	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.802;QD=4.06;ReadPosRankSum=-0.580;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr12	9446932	rs61916249	G	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:109,45:0.29:154
chr12	9446977	rs3874129	G	C	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	9447432	rs375245550	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.283;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=48.75;MQRankSum=-4.319;QD=0.94;ReadPosRankSum=1.062;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr12	9447492	rs75754601	T	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.53;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-1.609;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	9451370	rs200995345	T	C	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-5.810;QD=12.86;ReadPosRankSum=-0.198;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,64:0.65:98
chr12	9451397	rs74390404	G	A	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.29;MQRankSum=-4.494;QD=13.11;ReadPosRankSum=0.626;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,76:0.67:114
chr12	9452017	rs149620408	C	A	40.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.21;MQRankSum=1.282;QD=8.17;ReadPosRankSum=-0.253;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	9452062	rs75887043	A	C	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.75;QD=14.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9453656	rs61917368	C	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.01;QD=26.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9453743	rs28415351	C	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.26;QD=27.30;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	9453854	rs370590832	TC	T	4264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=0.969;QD=21.11;ReadPosRankSum=6.139;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:56,146:0.72:202
chr12	9453864	rs61917370	A	G	7131.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.93;MQRankSum=-1.425;QD=40.52;ReadPosRankSum=2.092;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,174:0.99:176
chr12	9455171	rs373750394	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.91;QD=30.30;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	9455428	rs11050141	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	9456729	rs11050148	T	C	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9458412	rs10743653	G	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.500;MQ=41.57;MQRankSum=2.229;QD=16.45;ReadPosRankSum=0.115;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	9459648	.	G	A	508	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=27;MQ=42.46;NF=24;NR=0;PP=508;QD=22.6154671895;SC=CTGTGGGCTGGTTGTCCTAGA;SbPval=1.0;Source=Platypus;TC=48;TCF=47;TCR=1;TR=24;WE=9459656;WS=9459641;set=Platypus	GT:AD:AF:DP	1/0:24,24:0.50:48
chr12	9459854	rs9971685	G	C	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.36;QD=26.33;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	9459898	rs2911825	G	T	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=30.21;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9462709	rs2889720	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr12	9462984	rs12317441	A	G	12703.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.21;QD=25.46;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,499:1.00:499
chr12	9463010	rs4883234	C	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr12	9463077	rs10771513	A	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=27.70;SOR=5.186;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	9463105	rs11050177	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.29;QD=31.52;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	9463806	rs10771515	T	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	9464109	rs12824979	A	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,64:0.43:148
chr12	9464133	rs10843383	C	G	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:149,168:0.53:317
chr12	9464241	rs61917427	C	A	7181.77	.	AC=1;AF=0.500;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	0/1:470,384:0.45:854
chr12	9464271	.	C	CGTT	8172.73	.	AC=1;AF=0.500;AN=2;DP=757;set=Intersection	GT:AD:AF:DP	0/1:458,233:0.34:691
chr12	9464748	rs10771516	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr12	9465465	rs11050199	A	G	5738.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.06;MQRankSum=13.095;QD=19.86;ReadPosRankSum=1.297;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:34,255:0.88:289
chr12	9465495	rs147788242	A	AT	4788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=11.296;QD=20.38;ReadPosRankSum=-2.622;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:34,201:0.86:235
chr12	9465872	rs4012572	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9549638	rs142226984	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=-1.266;QD=4.76;ReadPosRankSum=1.370;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	9555110	rs12821647	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.726;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-8.539;QD=0.88;ReadPosRankSum=-3.685;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:134,24:0.15:158
chr12	9555175	rs374009125	C	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=53.15;MQRankSum=-8.080;QD=6.64;ReadPosRankSum=5.893;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chr12	9555185	rs72475431	A	G	3140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-6.090;QD=24.35;ReadPosRankSum=1.282;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:30,99:0.77:129
chr12	9555201	rs199717489	C	A	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=53.51;MQRankSum=-9.329;QD=7.87;ReadPosRankSum=3.488;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:66,54:0.45:120
chr12	9571347	.	CAG	C	1134.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	9571547	rs61916776	C	G	7946.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	9571670	rs77617533	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	9572244	rs7305608	A	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	9572788	rs145731114	C	CGCACCTGGAT	3152.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.33;QD=45.69;SOR=5.166;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	9572944	rs7955974	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.64;MQRankSum=-0.230;QD=4.23;ReadPosRankSum=0.414;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	9573223	rs4763936	C	A	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=6.150;QD=16.45;ReadPosRankSum=-1.193;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:39,127:0.77:166
chr12	9573287	rs375873947	AAGGAAGGG	A	3404.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=42.56;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr12	9573338	rs4763950	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	9573997	rs187060396	T	C	5010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=12.679;QD=12.78;ReadPosRankSum=-3.919;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:156,236:0.60:392
chr12	9574002	rs10771709	C	T	15265.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.93;QD=36.87;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr12	9574020	rs200847155	T	C	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:314,176:0.36:490
chr12	9574119	rs4764050	A	G	10856.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	9574334	.	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=6.113;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=1.098;QD=7.63;ReadPosRankSum=-2.853;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	9574336	.	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=52.90;MQRankSum=1.276;QD=7.12;ReadPosRankSum=-2.094;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr12	9574344	rs4237949	T	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.04;QD=30.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	9574480	rs7132464	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.21;QD=26.75;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9577246	rs138017149	C	G	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:116,125:0.52:241
chr12	9577310	rs7296629	A	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	9578197	rs76671194	A	T	13134.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr12	9578320	.	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	0/1:114,83:0.42:197
chr12	9580122	rs61914680	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,38:0.39:97
chr12	9580203	rs58705479	G	C	4382.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:108,205:0.65:313
chr12	9580280	rs201256560	A	G	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.291;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=39.781;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-13.435;QD=6.11;ReadPosRankSum=-6.234;SOR=2.523;set=HC	GT:AD:AF:DP	0/1:161,67:0.29:228
chr12	9580395	rs61914681	C	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.07;MQRankSum=1.366;QD=34.75;ReadPosRankSum=-0.721;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr12	9581791	rs4763566	T	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=1.017;QD=6.31;ReadPosRankSum=-1.299;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr12	9581856	rs200761361	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.85;MQRankSum=0.717;QD=3.94;ReadPosRankSum=-1.460;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr12	9582277	rs138026526	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.96;MQRankSum=-3.067;QD=6.52;ReadPosRankSum=-1.606;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	9583108	rs141742771	C	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=0.644;QD=15.92;ReadPosRankSum=0.993;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	9583216	rs3864916	T	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.22;QD=42.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9583221	rs3864915	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.57;QD=40.25;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	9584916	rs3882934	C	T	129.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.43;QD=18.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9584962	rs368965918	C	T	144.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.43;QD=20.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9585487	rs56309949	G	T	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=49.18;MQRankSum=-3.630;QD=8.95;ReadPosRankSum=-0.687;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr12	9585598	rs200479049	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.72;QD=25.93;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	9586712	.	C	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=1.933;QD=2.55;ReadPosRankSum=-2.165;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:286,80:0.22:366
chr12	9586742	rs374827955	T	C	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=0.541;QD=4.10;ReadPosRankSum=-1.005;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:155,62:0.29:217
chr12	9589766	.	G	A	119.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.21;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9590052	rs149680272	G	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.00;QD=24.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	9590197	rs61914700	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	9590505	rs201948852	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.73;QD=25.16;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9590651	.	A	ACTGAGTAAC	3346.73	.	AC=2;AF=1.00;AN=2;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.94;QD=44.04;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	9707317	rs200514101	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9707329	rs201854834	G	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9713438	rs76076453	T	C	49.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.81;QD=24.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9751035	rs3072716	C	CAT	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	9751127	rs34919993	T	C	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.874;QD=7.74;ReadPosRankSum=1.191;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:161,125:0.44:286
chr12	9754011	rs150568392	G	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	9754044	rs2191965	A	G	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	9822387	rs16914640	C	G	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:63,113:0.64:176
chr12	9832822	rs2114872	C	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=24.63;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	9832882	rs2114873	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	9833628	rs3764021	C	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.783;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr12	9840773	rs7310460	T	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	9846521	rs7968401	C	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9869208	rs57357049	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.56;ReadPosRankSum=-0.095;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	9869208	.	TCC	CCG	109	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=3;NR=3;PP=109;QD=27.0779791437;SC=CTTGTCCCATTCCTCTTGCTC;SbPval=0.34;Source=Platypus;TC=12;TCF=8;TCR=4;TR=6;WE=9869218;WS=9869198;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr12	9869210	rs56751889	C	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.53;ReadPosRankSum=-0.298;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	9869271	rs2268146	A	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr12	9885526	rs12304510	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr12	9885707	rs71045297	A	ATAAGT	4151.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:99,104:0.51:203
chr12	9906067	rs1051065	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.310;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	9906350	rs57931161	GA	G	92.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9980243	rs2232543	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	9994445	rs33911869	GTGT	G	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10010006	rs33873	G	A	98.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	10015082	rs253147	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	10015177	rs253146	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	10034289	rs116321260	G	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr12	10051433	rs1407899	A	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	10051719	.	T	TA	28	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.9997;HP=15;HapScore=2;MGOF=31;MMLQ=24;MQ=63.51;NF=0;NR=3;PP=28;QD=10.3333333333;SC=GCCCTACTAGTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=10051727;WS=10051709;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10069302	rs526680	C	T	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	10074626	rs688577	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	10123931	rs74065430	A	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	10124336	rs2984956	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	10124373	rs2961542	C	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	10131684	rs607567	T	G	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	10131939	rs536947	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	10136672	rs2961544	G	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10137557	rs479499	A	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10137645	rs588272	T	G	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	10138830	rs576031	C	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	10146014	rs11447004	A	AC	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	10146236	rs617956	C	T	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	10146470	rs542700	G	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	10147850	rs521040	T	C	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	10148031	rs522837	T	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	10149406	rs581949	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	10149657	rs582968	T	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	10149851	rs583903	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	10151642	rs612593	T	C	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	10163583	rs590429	A	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	10165469	rs476474	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	10165593	rs620449	T	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	10167277	rs637790	G	C	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	10205420	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.642;QD=1.07;ReadPosRankSum=0.684;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr12	10206925	rs7315231	A	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:86,116:0.57:202
chr12	10215582	rs10772230	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	10217326	rs10622534	C	CTT	3401.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	10241553	rs5008763	C	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	10241593	rs1352477	A	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10241829	rs2277416	G	T	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	10245158	rs11347002	GA	G	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	10245237	.	G	GT	55	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=6;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=55;QD=41.0;SC=AGGAGTTGTTGTTTTCTGCCC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=10245245;WS=10245227;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	10251385	rs3816845	T	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr12	10251445	rs2306894	C	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	10270938	rs11053597	G	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	10271055	rs7959451	T	C	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	10279513	rs35532667	T	TA	119.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.91;ReadPosRankSum=0.967;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	10312648	rs13306593	C	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.640;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:71,43:0.38:114
chr12	10312675	rs12309394	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr12	10312691	rs17174597	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	10312878	rs2634156	C	T	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	10312914	rs3816844	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr12	10313075	rs3736235	T	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.208;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:48,29:0.38:77
chr12	10313134	rs3736234	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-1.460;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr12	10313356	rs34807991	C	T	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.758;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:87,50:0.36:137
chr12	10313356	.	CAC	TAG	529	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=26;MQ=60.0;NF=14;NR=8;PP=529;QD=26.4758124937;SC=ACCAATACTCCACCCCAACAA;SbPval=0.56;Source=Platypus;TC=81;TCF=52;TCR=29;TR=22;WE=10313366;WS=10313346;set=Platypus	GT:AD:AF:DP	0/1:59,22:0.27:81
chr12	10313358	rs3736232	C	G	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.384;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:90,50:0.36:140
chr12	10321514	rs6488266	C	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr12	10332291	rs2130007	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr12	10342816	rs114741616	C	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	10373324	rs7301041	T	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	10460543	rs2302489	A	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr12	10461883	rs10734825	A	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	10461908	rs77468054	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr12	10462052	rs10772256	T	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	10462431	rs7980604	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10467533	rs2537752	T	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	10467748	rs75318538	G	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-1.469;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr12	10511662	rs10743886	C	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	10525644	rs1351113	A	G	2134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.100;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:87,110:0.56:197
chr12	10525740	rs1049172	C	T	3856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=3.039;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:137,193:0.58:330
chr12	10531896	rs2255364	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10532111	rs2255353	T	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10532326	rs2255336	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	10532434	rs2617151	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	10560824	rs2617169	T	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10560957	rs2617170	T	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.753;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr12	10562025	rs1841957	C	T	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:117,85:0.42:202
chr12	10562089	rs1841958	A	C	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr12	10570965	rs2682495	C	G	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	10571042	rs2741882	A	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	10571091	rs2682494	T	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	10571106	rs2682493	G	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	10571158	rs10743890	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	10571177	rs4394921	A	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10571504	rs4579992	C	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=40.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10571514	rs4275705	C	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.59;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	10571536	rs33947579	A	AT	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.11;QD=21.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	10571622	rs4093355	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10572095	rs115221887	T	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=0.465;QD=12.03;ReadPosRankSum=0.063;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr12	10572839	rs2253365	A	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	10572982	rs2741881	A	G	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	10573094	rs2682491	C	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-2.110;QD=7.64;ReadPosRankSum=1.297;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr12	10573095	rs2682490	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=34.10;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10583611	rs3003	C	T	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	10583696	rs2981593	C	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr12	10586921	.	C	T	133.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:30,4:0.12:34
chr12	10586946	rs113946028	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=12.093;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-4.160;QD=14.44;ReadPosRankSum=-2.360;SOR=2.006;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr12	10586956	rs72475445	C	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.703;MLEAC=1;MLEAF=0.500;MQ=50.41;MQRankSum=-4.710;QD=12.95;ReadPosRankSum=-2.149;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:47,35:0.43:82
chr12	10586961	rs1356930	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr12	10586978	rs144149096	A	AT	1247.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,56:0.41:136
chr12	10587111	rs61917677	A	G	3000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.013;QD=14.86;ReadPosRankSum=2.294;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:61,141:0.70:202
chr12	10587158	rs35801775	A	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr12	10587631	rs144960284	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=3.313;QD=16.85;ReadPosRankSum=2.652;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr12	10588530	rs75545535	C	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-5.182;QD=1.80;ReadPosRankSum=0.408;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:245,60:0.20:305
chr12	10588647	rs28730284	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	10594748	rs72475448	A	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10600282	rs11053804	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.419;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	10602077	rs2734440	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	10603670	rs2253849	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	10603790	rs74062025	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr12	10658507	rs10845152	G	A	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:200,115:0.37:315
chr12	10659228	rs11053826	A	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:188,149:0.44:337
chr12	10659438	rs10772299	T	C	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	10659964	rs10772300	C	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	10675250	rs7980396	G	C	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	10675295	rs10845155	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:127,84:0.40:211
chr12	10746385	rs2244387	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	10748314	rs2168749	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.440;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	10748403	rs2682484	A	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-1.570;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr12	10759032	rs10772333	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	10760328	rs3947920	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=2.137;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	10760335	rs2125090	T	A	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=0.855;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	10760380	rs2125089	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr12	10762069	rs7311796	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=2.367;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	10763419	rs72054859	CTAGACATG	C	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10763440	rs12811247	G	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10766244	rs10772335	A	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:129,104:0.45:233
chr12	10775195	rs1078437	T	C	14984.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr12	10782115	rs3759259	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	10783657	rs143474286	G	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr12	10783729	rs2290717	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr12	10786757	rs5796407	T	TGAA	4839.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	10786797	rs2252664	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr12	10853824	rs75893726	A	G	136.98	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	10854625	rs10845205	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr12	10854763	rs73044645	G	A	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,101:0.54:186
chr12	10854878	rs3782670	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	10856219	rs2418102	C	T	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.417;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:71,99:0.58:170
chr12	10856512	rs147803692	T	C	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:60,116:0.66:176
chr12	10870900	rs11309033	AC	A	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	10871667	rs33016	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	10871805	.	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.323;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	10875488	rs1126501	T	C	4263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=3.260;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.240;QD=11.13;ReadPosRankSum=-0.635;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:170,213:0.56:383
chr12	10875525	rs1042085	G	A	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:124,130:0.51:254
chr12	10958658	rs2537817	T	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	10959031	rs1548803	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:98,77:0.44:175
chr12	10962115	rs3741845	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr12	10978402	rs597468	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	10999708	rs1047699	T	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	10999780	rs1063193	C	T	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr12	11000934	rs2227296	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.821;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	11034980	rs61914782	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.818;MLEAC=1;MLEAF=0.500;MQ=38.84;MQRankSum=-1.139;QD=15.23;ReadPosRankSum=0.023;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	11035368	rs11054060	T	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr12	11035482	rs10845228	T	C	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr12	11035533	rs10845229	G	A	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:176,120:0.41:296
chr12	11061122	rs1015443	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr12	11083356	rs116998526	A	G	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:107,127:0.54:234
chr12	11083515	rs200488155	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.73;MQRankSum=-1.117;QD=5.68;ReadPosRankSum=-0.339;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr12	11083677	rs10772391	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	11091432	rs3741843	C	T	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	11091693	rs7138535	T	A	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:128,153:0.54:281
chr12	11126111	rs4763232	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	11126428	rs7314608	T	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	11138683	rs10772397	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:187,118:0.39:305
chr12	11138852	rs1376251	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr12	11149532	rs1450839	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:88,65:0.42:153
chr12	11149623	rs138319813	C	T	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:162,202:0.55:364
chr12	11149711	rs10845279	C	A	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.335;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:92,61:0.40:153
chr12	11149720	rs10845280	A	G	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.205;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:85,53:0.38:138
chr12	11149769	rs10845281	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr12	11150033	rs12226919	G	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.073;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:240,79:0.25:319
chr12	11150046	rs12226920	G	T	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.692;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:271,90:0.25:361
chr12	11150319	rs11054143	T	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr12	11150540	rs34965724	CA	C	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	11150551	rs4388985	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	11150579	rs1463237	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	11174261	rs75441696	C	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-2.849;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:299,22:0.07:321
chr12	11174264	rs77074409	C	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-2.704;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:319,25:0.07:344
chr12	11174271	rs79475879	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-2.238;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:350,30:0.08:380
chr12	11174276	rs10772420	GT	AC	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.443;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.883;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:367,33:0.08:400
chr12	11174282	rs74386164	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.978;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:388,35:0.08:423
chr12	11174286	rs77837442	C	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-1.238;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:394,39:0.09:433
chr12	11174327	rs72475481	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.983;QD=0.66;ReadPosRankSum=-0.029;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:436,70:0.14:506
chr12	11174372	rs74772077	C	G	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.350;QD=3.14;ReadPosRankSum=0.978;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:357,60:0.14:417
chr12	11174380	rs76970958	C	T	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.007;QD=3.44;ReadPosRankSum=0.783;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:312,54:0.15:366
chr12	11174390	rs74992161	G	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.018;QD=3.59;ReadPosRankSum=0.810;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:273,47:0.15:320
chr12	11174397	rs76455106	T	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.997;QD=3.56;ReadPosRankSum=0.249;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:234,41:0.15:275
chr12	11174416	rs112900131	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.443;QD=1.33;ReadPosRankSum=0.368;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:172,29:0.14:201
chr12	11174753	rs1868769	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.799;QD=4.25;ReadPosRankSum=-2.406;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:114,46:0.29:160
chr12	11182998	rs200315131	CA	TC	3229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=1.471;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-12.610;QD=5.05;ReadPosRankSum=3.372;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:523,116:0.18:639
chr12	11183042	rs3759246	C	G	2352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-12.928;QD=3.89;ReadPosRankSum=0.855;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:508,97:0.16:605
chr12	11183046	rs201730548	C	T	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-12.044;QD=3.79;ReadPosRankSum=0.779;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:510,90:0.15:600
chr12	11183052	rs199894662	G	A	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-9.427;QD=2.93;ReadPosRankSum=1.214;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:504,75:0.13:579
chr12	11183066	rs138895028	A	T	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-4.164;QD=2.13;ReadPosRankSum=-1.979;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:514,68:0.12:582
chr12	11183451	rs10743938	A	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:193,140:0.42:333
chr12	11183496	rs199736450	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=22.101;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-15.344;QD=0.14;ReadPosRankSum=-1.915;SOR=2.830;set=HC	GT:AD:AF:DP	0/1:219,18:0.08:237
chr12	11183506	rs115707514	T	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=19.972;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-13.953;QD=0.55;ReadPosRankSum=-0.938;SOR=2.618;set=HC	GT:AD:AF:DP	0/1:197,21:0.10:218
chr12	11183524	rs75159539	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=14.748;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-11.291;QD=2.10;ReadPosRankSum=-0.745;SOR=2.094;set=HC	GT:AD:AF:DP	0/1:157,27:0.15:184
chr12	11183576	rs72475488	T	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-9.091;QD=2.46;ReadPosRankSum=3.184;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:158,42:0.21:200
chr12	11183642	rs73049067	A	G	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-6.423;QD=3.32;ReadPosRankSum=-3.024;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:233,73:0.24:306
chr12	11183676	rs73049072	C	T	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.810;QD=4.36;ReadPosRankSum=1.099;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:236,69:0.23:305
chr12	11183697	rs73049074	C	A	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-5.463;QD=5.88;ReadPosRankSum=1.826;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:205,61:0.23:266
chr12	11183708	rs80125932	T	C	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.338;QD=6.15;ReadPosRankSum=2.024;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:193,55:0.22:248
chr12	11183722	rs78562467	A	C	1508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-6.556;QD=7.32;ReadPosRankSum=0.439;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:156,50:0.24:206
chr12	11183752	rs72475489	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-6.636;QD=2.66;ReadPosRankSum=-1.208;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr12	11199734	rs2597984	T	C	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.864;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr12	11201689	rs2597986	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr12	11201846	rs199838132	A	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-8.412;QD=4.45;ReadPosRankSum=2.571;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:112,23:0.17:135
chr12	11201850	.	TATC	T	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-8.227;QD=4.62;ReadPosRankSum=2.252;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:107,23:0.18:130
chr12	11201865	.	AAT	A	618.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-6.576;QD=5.68;ReadPosRankSum=2.231;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr12	11201868	.	G	C	74.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-6.412;QD=0.72;ReadPosRankSum=2.536;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr12	11201872	.	AG	A	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-7.042;QD=5.98;ReadPosRankSum=2.174;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr12	11201889	rs72475501	C	G	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-6.887;QD=8.97;ReadPosRankSum=0.017;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr12	11201928	rs74318546	C	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.524;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-4.384;QD=5.22;ReadPosRankSum=-0.549;SOR=2.457;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr12	11201933	rs79649094	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-4.502;QD=3.90;ReadPosRankSum=0.556;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr12	11201934	rs75574044	G	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.252;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-4.388;QD=4.08;ReadPosRankSum=0.405;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr12	11201950	rs76847966	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-2.744;QD=6.71;ReadPosRankSum=-0.789;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	11201953	rs78927245	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-2.638;QD=7.38;ReadPosRankSum=-1.235;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr12	11201962	rs2597987	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	11214066	.	T	C	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.559;ClippingRankSum=0.000;DP=708;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-24.484;QD=4.03;ReadPosRankSum=-0.327;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:592,109:0.16:701
chr12	11214074	rs200528237	T	C	2865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.281;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-24.594;QD=4.02;ReadPosRankSum=1.357;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:600,113:0.16:713
chr12	11214080	.	G	A	2928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.662;ClippingRankSum=0.000;DP=731;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-24.784;QD=4.05;ReadPosRankSum=2.548;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:611,113:0.16:724
chr12	11214082	.	T	C	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;ClippingRankSum=0.000;DP=735;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-24.870;QD=4.00;ReadPosRankSum=2.723;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:614,114:0.16:728
chr12	11214091	.	G	C	2846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.159;ClippingRankSum=0.000;DP=735;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-24.883;QD=3.91;ReadPosRankSum=3.308;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:615,114:0.16:729
chr12	11214101	.	C	G	2895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.409;ClippingRankSum=0.000;DP=727;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-24.825;QD=4.02;ReadPosRankSum=3.003;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:608,113:0.16:721
chr12	11214133	rs76020872	C	T	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-22.656;QD=3.01;ReadPosRankSum=0.656;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:503,81:0.14:584
chr12	11214137	rs76147157	C	T	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.248;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-22.297;QD=3.05;ReadPosRankSum=0.201;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:492,77:0.14:569
chr12	11214153	.	C	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DP=486;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-20.540;QD=1.94;ReadPosRankSum=0.181;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:429,53:0.11:482
chr12	11214156	.	G	T	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-20.284;QD=2.01;ReadPosRankSum=-0.620;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:408,52:0.11:460
chr12	11214161	.	TG	CA	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=1.862;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-20.246;QD=2.15;ReadPosRankSum=-1.608;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:390,51:0.12:441
chr12	11214167	.	G	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-19.737;QD=2.43;ReadPosRankSum=-2.489;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:360,47:0.12:407
chr12	11214324	.	C	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;ClippingRankSum=0.000;DP=326;ExcessHet=3.0103;FS=7.773;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-14.254;QD=0.67;ReadPosRankSum=-3.007;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:297,28:0.09:325
chr12	11214326	.	G	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=8.144;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-14.941;QD=0.86;ReadPosRankSum=-1.281;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:302,26:0.08:328
chr12	11214330	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=7.710;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-15.547;QD=0.96;ReadPosRankSum=-1.051;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:298,28:0.09:326
chr12	11214336	rs371367179	A	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=7.413;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-15.638;QD=1.20;ReadPosRankSum=0.072;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:294,30:0.09:324
chr12	11214351	.	G	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-16.486;QD=2.56;ReadPosRankSum=0.693;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:263,38:0.13:301
chr12	11214360	rs73260771	C	A	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-16.288;QD=3.20;ReadPosRankSum=2.258;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:253,40:0.14:293
chr12	11214363	.	T	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-15.663;QD=3.36;ReadPosRankSum=2.199;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:245,42:0.15:287
chr12	11214368	.	T	C	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=2.962;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-15.142;QD=3.52;ReadPosRankSum=3.179;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:246,42:0.15:288
chr12	11214386	rs200171449	T	G	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-14.543;QD=4.13;ReadPosRankSum=4.216;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:223,43:0.16:266
chr12	11214392	rs200937291	G	A	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-14.096;QD=4.51;ReadPosRankSum=4.087;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:208,43:0.17:251
chr12	11214437	rs72477410	T	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=4.404;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-14.098;QD=2.43;ReadPosRankSum=1.405;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:205,35:0.15:240
chr12	11214455	rs72477411	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-12.292;QD=1.91;ReadPosRankSum=-1.364;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:194,27:0.12:221
chr12	11244166	rs35720106	G	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:104,76:0.42:180
chr12	11244194	rs71443637	T	C	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr12	11244725	rs68157013	C	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr12	11244846	.	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-7.643;QD=1.11;ReadPosRankSum=3.839;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:132,14:0.10:146
chr12	11244849	.	T	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-7.643;QD=1.11;ReadPosRankSum=3.735;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:132,14:0.10:146
chr12	11244855	.	T	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-7.327;QD=1.36;ReadPosRankSum=3.673;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:121,14:0.10:135
chr12	11244871	.	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.145;QD=3.13;ReadPosRankSum=2.648;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr12	11244878	rs369719862	A	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-5.821;QD=3.65;ReadPosRankSum=1.802;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:75,14:0.16:89
chr12	11338539	rs1650016	C	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	11338555	rs1669409	A	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	11338613	rs1650017	CA	GG	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr12	11338781	rs1669413	C	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr12	11338957	rs5020531	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr12	11338983	rs1650019	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	11339020	rs35969491	T	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	11418954	rs1896551	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	11421093	rs61463237	T	TGGG	4531.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	11422474	rs369878445	T	C	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:235,156:0.40:391
chr12	11461292	rs1052808	C	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	11461470	.	A	G	1330	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=11;MMLQ=21;MQ=55.32;NF=37;NR=40;PP=1330;QD=17.7243014617;SC=GGGACTGGTTACCTCCTTGTG;SbPval=0.51;Source=Platypus;TC=80;TCF=38;TCR=42;TR=77;WE=11461478;WS=11461460;set=Platypus	GT:AD:AF:DP	1/1:3,77:0.96:80
chr12	11461706	rs12308381	G	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.359;QD=1.79;ReadPosRankSum=-3.892;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:158,43:0.21:201
chr12	11461741	rs148550298	C	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,85:0.53:161
chr12	11461836	rs6488386	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	11462275	rs1834857	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr12	11463221	rs138479661	C	G	6414.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:316,335:0.51:651
chr12	11463335	rs111244440	C	T	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:151,222:0.60:373
chr12	11506749	.	T	C	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-9.300;QD=5.41;ReadPosRankSum=-0.041;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:138,43:0.24:181
chr12	11506774	rs202083397	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.535;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-8.557;QD=3.37;ReadPosRankSum=-3.894;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:146,25:0.15:171
chr12	11506785	rs201935302	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.819;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-6.519;QD=1.49;ReadPosRankSum=-4.119;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:141,13:0.08:154
chr12	11506893	rs10845341	C	T	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:63,86:0.58:149
chr12	11546781	rs71443675	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=0.884;QD=2.89;ReadPosRankSum=-0.442;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:126,42:0.25:168
chr12	11803220	rs2856305	A	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	11993516	rs60622848	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr12	12006544	rs17210957	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr12	12043863	rs72550781	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr12	12044534	.	G	GA	521.73	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr12	12230938	rs1641721	C	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	12232647	rs61729499	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr12	12243828	rs2287156	C	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:104,129:0.55:233
chr12	12247793	rs61739220	A	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:93,130:0.58:223
chr12	12265118	rs55833207	CA	C	234.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	12277315	rs78623061	A	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.553;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr12	12277603	rs139978705	GA	G	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.416;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	12278468	rs2302684	A	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	12301898	rs2302685	C	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	12332842	rs7975614	C	T	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:418,207:0.33:625
chr12	12334414	rs74061124	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr12	12336966	rs7978064	A	G	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:115,175:0.60:290
chr12	12397654	rs56087862	C	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	12397668	rs10219768	T	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	12397668	.	TTA	ATT	530	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=0;NR=10;PP=530;QD=58.3467874862;SC=TCAAATCGGTTTAAGTGAGCA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=10;WE=12397678;WS=12397644;set=Platypus	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	12397670	rs10219748	A	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	12419525	rs60730865	T	C	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.642;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:188,103:0.35:291
chr12	12482876	rs113872597	CCTG	C	283.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	12483275	rs1861676	G	A	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:82,129:0.61:211
chr12	12483713	rs4763282	A	G	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:95,135:0.59:230
chr12	12483927	rs4763818	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	12496086	rs3741798	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:135,100:0.43:235
chr12	12509993	rs369911273	T	G	3701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=3.141;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:105,175:0.62:280
chr12	12618715	rs967648	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	12765029	.	C	T	2425.77	.	AC=1;AF=0.500;AN=2;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,108:0.65:165
chr12	12814330	rs3825268	T	C	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:73,134:0.65:207
chr12	12814818	rs4763862	C	T	3085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.187;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:78,138:0.64:216
chr12	12871099	rs2066827	T	G	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr12	12879057	rs34323	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=27.07;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	12938793	rs7297140	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr12	12966967	rs7978823	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:122,75:0.38:197
chr12	12967053	rs74063824	C	G	5392.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:219,257:0.54:476
chr12	12977400	rs1010878	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr12	13028653	rs10845659	A	G	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	13101454	rs7294444	G	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr12	13102605	rs4630382	G	A	5076.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:370,273:0.42:643
chr12	13136623	rs735689	T	C	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:234,172:0.42:406
chr12	13142174	rs850918	C	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=1.752;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	13153126	.	C	CGGCGGCAGGGCGGCAG	2394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=499;ExcessHet=3.0103;FS=5.118;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=9.983;QD=13.68;ReadPosRankSum=2.563;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:99,76:0.43:175
chr12	13153388	.	G	GGCAGCAGTCCAGCAGTGCAGCAGT	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.21;MQRankSum=7.457;QD=9.91;ReadPosRankSum=-1.628;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr12	13153773	rs1291364	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr12	13154077	rs67498669	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.056;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	13154105	rs9919709	A	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.656;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	13154123	rs61912779	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=1.567;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	13154582	rs59113920	CG	C	934.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,40:0.38:104
chr12	13154790	rs1291363	G	C	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:237,179:0.43:416
chr12	13154911	rs1291362	A	G	5628.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:383,298:0.44:681
chr12	13155166	rs1291361	G	T	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:213,128:0.38:341
chr12	13208552	rs4763924	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:53,115:0.68:168
chr12	13211212	rs6488582	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	13211495	rs76117339	GT	G	1069.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr12	13214537	rs3741818	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr12	13214791	rs3741817	G	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr12	13215616	rs11055220	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.28;ReadPosRankSum=0.812;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr12	13215685	rs2200498	C	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	13219605	rs62636619	G	A	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:104,141:0.58:245
chr12	13219832	rs16908634	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	13221606	rs1386005	T	C	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr12	13224027	rs3825270	C	T	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	13242297	rs6488584	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr12	13256353	rs10772620	A	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:49,100:0.67:149
chr12	13294280	rs7978768	C	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	13294424	rs7978889	C	T	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:145,187:0.56:332
chr12	13369196	rs8885	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.43;ReadPosRankSum=0.967;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	13526305	rs7308685	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr12	13526328	rs17821405	G	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr12	13529068	rs4763975	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	13529401	rs7957232	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.10;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	13716638	rs1806191	G	A	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:124,153:0.55:277
chr12	13720043	rs3026160	G	A	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:118,118:0.50:236
chr12	13720078	.	C	T	1390.77	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:112,75:0.40:187
chr12	13720272	rs4764010	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	13768354	rs1468845	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	13769664	rs1805199	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	14018777	rs7301328	G	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr12	14019157	rs12818068	C	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr12	14577892	rs2231909	A	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr12	14579235	rs11055969	A	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	14590981	rs10734876	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	14591220	rs4479040	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	14599904	rs5796595	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=-1.049;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	14628705	rs7298275	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	14634392	rs140044044	C	CAGTT	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	14656768	rs1600	G	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	14664595	rs10846013	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr12	14688644	rs7957558	C	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr12	14689447	rs112136886	T	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr12	14689451	rs1345531	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr12	14689673	rs111725530	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	14694993	rs1862014	G	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	14720554	rs147342083	GGCA	G	3329.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:49,84:0.63:133
chr12	14720583	rs7954623	T	C	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr12	14720736	rs11829084	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	14769468	rs1558795	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	14774849	rs7302418	T	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	14775214	rs2287538	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	14781503	rs4764105	A	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	14781678	.	G	GAA	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.341;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr12	14794062	rs10772800	G	A	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=1.368;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,42:0.60:70
chr12	14796643	rs7966185	G	T	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:129,126:0.49:255
chr12	14804994	rs7313027	G	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	14822855	rs7314345	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	14827463	rs3217157	AATC	A	3846.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:117,101:0.46:218
chr12	14829893	rs1420635	A	C	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:91,76:0.46:167
chr12	14832830	rs11336448	CT	C	32.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.366;QD=4.68;ReadPosRankSum=-1.981;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	14834421	rs56944147	GA	G	5653.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:113,145:0.56:258
chr12	14834427	rs58911033	G	T	5659.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:114,146:0.56:260
chr12	14841126	rs76507201	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	14923522	rs12818627	T	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	14924028	rs16910259	A	G	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:258,180:0.41:438
chr12	14924118	.	A	C	664.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr12	14928493	rs17761740	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	14944326	rs138485732	TGA	T	456.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr12	15034996	rs2430735	T	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	15067509	.	TGTGCGTGTGTGTGTGCACGCGTGCGTGCGTGTGTGCAC	T	811.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.769;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=4.093;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr12	15067511	rs148149515	T	TGTGC	704.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-2.012;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	15073831	rs2445382	G	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-2.375;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr12	15081897	rs2445371	A	C	9740.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.24;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	15081897	.	AG	CA,CG	1172	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=18,59;NR=42,96;PP=853,1172;QD=15.1077979144;SC=CCAGCTGGCAAGTCTCCTTCA;SbPval=0.84;Source=Platypus;TC=155;TCF=59;TCR=96;TR=60,155;WE=15081906;WS=15081887;set=Platypus	GT:AF:DP	0/1:0.39:155
chr12	15081898	rs11056243	G	A	2473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=1.361;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:161,127:0.44:288
chr12	15082004	rs11056244	T	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	15090762	rs3748296	G	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	15090837	rs3748297	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	15091221	rs11432737	A	AT	4595.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	15095558	rs4703	C	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,42:0.32:130
chr12	15095707	rs10772822	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	15101034	rs111829212	GCACA	G	877.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.90;ReadPosRankSum=1.265;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr12	15101072	rs4764142	T	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	15103605	rs2430711	A	G	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	15131995	rs2233623	C	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	15652330	rs4764197	T	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	15656797	.	C	G	194.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	15656832	rs4764199	T	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	15677992	rs960666	A	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	15679120	rs6488782	C	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:98,78:0.44:176
chr12	15679208	rs7134888	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr12	15702007	rs7132826	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:87,150:0.63:237
chr12	15704425	rs1012674	G	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr12	15704698	.	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-1.169;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	15710270	rs10846209	C	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	15722555	rs10846212	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr12	15731724	rs5796639	T	TG	3793.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	15733116	rs10846214	T	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr12	15733856	rs111564580	TA	T	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	15734800	rs2300289	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr12	15742313	rs34222753	GA	G	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.057;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr12	15748020	rs1558787	C	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.668;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr12	15776223	.	TA	T	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.588;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:76,27:0.26:103
chr12	15777486	rs4623959	T	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	15803992	rs4237955	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	15818880	rs4363660	T	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr12	15822229	rs4237957	A	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	15822244	rs4237958	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	15834239	rs372474846	GTAA	G	125.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr12	16036261	rs10734889	C	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	16050808	rs10772879	T	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	16052942	.	A	G	161.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr12	16055926	rs71042275	G	GT	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	16189694	rs2290979	T	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr12	16342754	.	AAAAG	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.249;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr12	16342825	rs61915888	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	16347340	.	A	AGAG	3998.73	.	AC=1;AF=0.500;AN=2;DP=240;set=Intersection	GT:AD:AF:DP	0/1:122,107:0.47:229
chr12	16369828	rs1671511	A	T	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	16397677	rs1527014	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	16397746	rs1852451	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	16430284	rs1671487	G	A	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	16510395	rs2075239	T	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	16516710	rs3759207	T	C	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:62,116:0.65:178
chr12	16529036	rs71054810	AT	A	555.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=20.58;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	16529269	rs6488842	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	16713487	rs3214385	A	AT	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.680;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr12	16743165	rs2058798	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	16743217	rs2058799	A	G	71.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.36;ReadPosRankSum=0.253;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	16747034	rs10846380	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr12	16747277	.	T	G	189	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=12;HapScore=2;MGOF=18;MMLQ=18;MQ=59.54;NF=0;NR=21;PP=189;QD=10.6557720261;SC=AACTAAAAAATAAAAAAGAAA;SbPval=1.0;Source=Platypus;TC=45;TCF=10;TCR=35;TR=21;WE=16747285;WS=16747267;set=Platypus	GT:AD:AF:DP	1/0:24,21:0.47:45
chr12	17142520	rs35949588	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr12	17142546	rs7955087	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr12	18234461	rs11043840	T	A	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-1.312;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:14,46:0.77:60
chr12	18435398	rs35277916	GCCC	G	2523.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr12	18435452	rs11044004	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr12	18499636	rs17847788	C	T	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:87,115:0.57:202
chr12	18499777	rs10770357	C	G	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	18534866	rs11044057	C	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.965;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr12	18641326	rs7137852	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	18648812	rs11834118	G	A	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	18649057	rs12312266	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	18656174	rs11044141	G	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr12	18656225	rs11044142	G	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:158,110:0.41:268
chr12	18720057	rs11044189	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	18747387	rs12827507	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr12	18747528	rs11044211	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	18760121	rs77450190	G	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-1.892;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	18760151	rs80273034	A	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.215;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	18762414	rs76714154	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.798;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr12	18762450	rs2277328	A	C	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.709;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:65,79:0.55:144
chr12	18800989	rs67711384	CA	C	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	18801017	rs501379	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	18848131	rs1487070	T	C	105.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.66;ReadPosRankSum=-0.967;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr12	18849071	rs3825081	G	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=1.105;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	18854540	.	ATCCTCCTCCTCC	A,ATCC	5389.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=210;set=Intersection	GT:AF:DP	1/2:0.47,0.53:131
chr12	18872325	rs10841078	G	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	18889149	rs12300257	T	C	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.107;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr12	18889517	rs144525318	A	AAATTTGAG	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	18889547	rs10841080	C	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr12	18889565	rs12306752	A	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr12	18890472	rs5796766	GT	G	875.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	19282670	rs28512290	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr12	19283135	rs61913270	C	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	19406863	rs6486942	C	T	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	19410474	.	A	AT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-2.043;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr12	19418588	rs6486945	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	19418874	rs7316780	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	19428009	rs2279537	T	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	19512563	rs11044515	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=-0.811;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr12	19522484	rs113006194	A	AAAAG	129	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	19626311	.	AT	A	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.470;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr12	19626315	.	ATTTATTTATTT	A	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-0.430;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	19626330	rs12818887	T	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-1.170;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	19626334	rs71530937	T	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.945;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr12	19626338	rs182141135	T	A	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-1.328;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	19873411	rs4301848	G	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	19873497	rs4369485	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.74;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	20522124	rs144106925	CGTGT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.740;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.208;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	20522252	rs12305038	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr12	20709733	rs4762972	G	A	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	20724988	rs7966459	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr12	20766559	rs10743380	C	T	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	20766685	rs7308381	G	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	20769026	rs68125264	TTAGA	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	20774464	rs10743381	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr12	20774539	rs10734705	A	G	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	20783099	rs7304499	AC	CT	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	20786787	rs4265636	T	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	20786807	rs3858661	T	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	20786822	rs10841580	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr12	20786841	rs10743382	T	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	20786880	rs10841581	C	T	266.98	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr12	20801855	rs9284155	C	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.88;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	20803323	rs9804769	A	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	20852449	rs113489958	A	ATTTG	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr12	20864356	rs7963279	C	T	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.652;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:219,131:0.37:350
chr12	20868247	rs34288910	C	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr12	20870033	rs3983551	CTTTT	C	885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=2.281;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:71,27:0.28:98
chr12	20870265	rs2417862	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=1.006;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	20874599	rs34902740	TA	T	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	20875983	rs35653399	G	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	20876227	rs12820079	G	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:77,46:0.37:123
chr12	20885941	rs74471820	T	C	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:154,110:0.42:264
chr12	20893052	rs2037154	C	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr12	20893108	rs2271656	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr12	20893354	rs12368368	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	20903757	rs10841611	T	C	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:124,229:0.65:353
chr12	20903865	rs10841612	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr12	20905250	rs6487138	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	20968828	rs10734710	C	T	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	21011480	rs4149117	T	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	21011581	rs4149118	G	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	21013948	rs3764009	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21014139	rs3764008	C	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21014163	rs3764007	T	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21015610	rs1036261	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	21015760	rs7311358	G	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	21031020	rs2417938	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21032242	rs4149142	T	G	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	21032354	.	CTTCTT	C	283.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	21036411	rs2053098	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21051489	rs4149153	C	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	21054369	rs3764006	G	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21054918	rs2082518	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	21065235	rs142241896	TTTTATTTATTTATTTA	T	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=41.59;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	21065365	rs10841706	C	A	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=25.30;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	21065429	rs34721125	AT	A	98.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.754;QD=5.81;ReadPosRankSum=-1.240;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	21168677	.	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.553;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	21168758	rs34168692	T	TA,TAA	153.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=9;set=Intersection	GT:AF:DP	1/1:1.00:8
chr12	21172452	rs192002639	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	21176135	rs1546308	T	C	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	21176247	rs1546307	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	21201614	.	A	G	83	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5002;HP=2;HapScore=2;MGOF=52;MMLQ=25;MQ=58.64;NF=4;NR=5;PP=83;QD=13.085690283;SC=GTGTGTGTGTATATATTTACA;SbPval=0.38;Source=Platypus;TC=16;TCF=9;TCR=7;TR=9;WE=21201622;WS=21201604;set=Platypus	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	21201663	rs11045689	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	21220349	rs1910163	A	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21317791	rs4149032	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=1.341;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr12	21317810	rs4149033	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr12	21317922	rs4149034	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr12	21329738	rs2306283	A	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.724;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr12	21331599	rs4149057	T	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr12	21331987	rs2291076	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr12	21391976	rs34671512	A	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr12	21428371	rs3764044	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.273;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	21447083	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	21526472	rs12306121	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr12	21526651	rs12319824	G	A	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.009;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr12	21529150	rs17680787	G	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.331;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	21529212	rs12305367	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.297;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr12	21531437	rs5484	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	21590621	rs2058464	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	21590788	rs2110165	C	A	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	21593230	rs147237307	C	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr12	21593404	rs4762702	G	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21602792	rs71537701	CTTTTTTTTTTTT	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	21608891	rs2302500	T	C	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	21609127	rs4367993	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	21609222	rs4388943	G	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21609733	rs7964140	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	21609761	rs34335650	C	CAACT	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	21609773	rs7964152	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.866;QD=8.11;ReadPosRankSum=-1.917;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr12	21609907	rs7964568	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=25.38;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	21614141	rs151311552	CAATTT	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	21615664	rs3782660	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21615917	rs34595378	C	CAG	1181.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	21615935	rs10841819	A	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21620456	rs139684530	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=0.312;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	21621419	rs11046075	C	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr12	21623179	rs61754415	T	C	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.500;MQ=50.34;MQRankSum=-1.157;QD=7.71;ReadPosRankSum=1.121;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:85,62:0.42:147
chr12	21623284	.	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.500;MQ=48.82;MQRankSum=0.617;QD=1.02;ReadPosRankSum=-0.683;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr12	21623298	.	A	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=49.38;MQRankSum=-4.602;QD=1.67;ReadPosRankSum=1.184;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr12	21623969	rs6500	A	G	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.396;QD=7.30;ReadPosRankSum=-0.159;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:97,67:0.41:164
chr12	21624308	rs56736899	TA	T	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr12	21626324	rs917852	A	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=1.139;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	21626330	rs917853	C	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21627672	rs35159698	C	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	21628320	rs10841831	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	21628336	rs10841832	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	21628791	rs3752648	T	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr12	21628812	rs10160843	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	21629987	rs917854	T	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	21629993	rs5796903	A	AC	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	21639528	rs10712738	GA	G	653.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.408;QD=14.86;ReadPosRankSum=1.685;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:3,41:0.93:44
chr12	21639591	rs7964104	G	C	94.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	21652641	rs12423412	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=-0.114;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	21654831	rs1060126	G	T	11247.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	21657590	rs67392337	AT	A	11808.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr12	21657618	rs11046089	T	A	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:99,120:0.55:219
chr12	21680609	rs7966780	C	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	21681819	rs2306178	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	21684029	rs3765093	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21689882	rs10431213	T	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr12	21692166	rs36023861	CA	C	93.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21699491	rs3765089	C	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	21711009	rs7967170	C	A	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21711111	rs7977474	G	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	21711381	rs7977648	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=-0.191;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	21711385	rs7977846	G	C	315.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	21712545	rs1871136	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	21712574	rs1871137	C	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	21712728	rs111250042	GACATTCTTTGAAATT	G	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21713308	rs4639981	T	A	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	21713402	rs2306180	T	C	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	21715801	rs1473421	A	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	21716055	rs1473422	A	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	21716098	rs1473423	T	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21727315	rs7963756	C	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	21733121	rs2126887	T	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	21733299	rs34225615	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:247,140:0.36:387
chr12	21757272	rs153944	A	G	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21791272	rs1650289	T	C	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21791410	rs71053332	TA	T	486.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=0.779;QD=13.52;ReadPosRankSum=2.568;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chr12	21791455	rs1427830	A	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=26.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	21794865	rs1626023	A	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	21796814	rs4762862	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	21797029	rs1650294	A	G	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	21799999	rs1540405	G	C	8226.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	21807432	rs1677078	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	21807640	rs1650315	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	21807687	rs7953579	C	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	21965170	rs7966926	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	21967522	rs113882813	GT	G	830.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr12	21968902	.	T	TA	510.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr12	21970019	rs2638441	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	21971279	rs7133945	C	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	21981852	rs114551415	T	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:121,92:0.43:213
chr12	21995555	rs1643235	C	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.11;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	21998438	rs137914761	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	22005003	rs2307024	T	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr12	22005510	rs704183	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	22014157	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=-1.420;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	22014160	.	C	CA	202.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.53;ReadPosRankSum=2.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	22014161	rs2418018	C	A	95.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.64;ReadPosRankSum=-2.515;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	22014162	.	C	T	214.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.86;ReadPosRankSum=2.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	22014163	rs2418019	C	T	67.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.53;ReadPosRankSum=-2.515;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	22014164	.	C	A	214.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.86;ReadPosRankSum=2.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	22014165	rs2418020	C	A,T	349.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:0,3,6:0.33,0.67:9
chr12	22016004	rs4148670	GA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=12.053;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.714;QD=3.44;ReadPosRankSum=1.159;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	22017422	rs697250	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	22017486	rs697251	C	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	22025700	rs17846773	G	A	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr12	22035615	rs4148663	A	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.594;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	22035873	rs1356368	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr12	22035883	rs1283802	T	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	22047151	rs704216	G	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	22047174	rs704217	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	22063115	rs10770865	A	G	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr12	22063251	rs35857705	CA	C	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.992;QD=6.19;ReadPosRankSum=-0.708;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:72,88:0.55:160
chr12	22063337	rs4148656	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.262;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr12	22063737	rs4762719	G	T	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	22063749	rs4762720	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	22063971	rs4148654	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	22068849	rs3759236	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr12	22078245	rs2900493	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	22078571	rs2176394	T	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	22078838	rs2277405	T	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-1.169;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	22086976	rs6487252	A	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	22089348	rs4586220	G	A	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	22211358	rs143120303	CA	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.748;QD=3.61;ReadPosRankSum=0.191;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	22213786	rs10841930	C	T	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.029;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr12	22215194	rs33946820	CTTT	C	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.525;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr12	22215408	rs143225178	GAATT	G	1602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.598;QD=20.55;ReadPosRankSum=2.443;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:35,43:0.55:78
chr12	22354921	rs704219	A	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.090;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:53,37:0.41:90
chr12	22440313	rs7956389	C	A	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=1.619;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr12	22440313	.	CCA	ACG	1080	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=24;MQ=60.0;NF=9;NR=21;PP=1080;QD=37.7822624954;SC=CAGAGATGTGCCACCTTACCT;SbPval=0.69;Source=Platypus;TC=60;TCF=20;TCR=40;TR=30;WE=22440323;WS=22440303;set=Platypus	GT:AD:AF:DP	1/0:30,30:0.50:60
chr12	22440315	rs2072542	A	G	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=1.318;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr12	22440347	rs7956659	G	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr12	22478425	rs4762904	A	G	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,90:0.62:145
chr12	22478698	rs4762905	C	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	22486784	rs73089246	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr12	22489150	rs3809202	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr12	22489256	rs7970051	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	22602796	rs2063573	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:148,124:0.46:272
chr12	22612328	rs113520967	A	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	22625661	rs10842027	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr12	22643268	rs7132097	C	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	22665418	.	CAT	C	38	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=25;MQ=60.0;NF=2;NR=0;PP=38;QD=40.5;SC=GAAAAAAGAACATGAGTCTCA;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=22665427;WS=22665408;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr12	22676294	rs74068203	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	22677349	rs6487309	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr12	22680851	rs11046459	A	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.273;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr12	22688366	rs10505884	A	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	22696845	rs2271471	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	22796678	.	T	A	912.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,56:0.47:120
chr12	22796994	rs11429701	A	AT	2121.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=39.29;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	23685985	.	C	A	474.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr12	23686237	rs148266789	GTC	G	33.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	23757240	.	G	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.531;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	23757245	rs1479452	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.317;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	23793658	rs74071390	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr12	23915547	rs71059921	G	GA	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr12	23998888	rs7980561	T	C	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	24102700	.	G	GTC	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-1.718;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr12	24103911	rs72058866	GCACA	G,GCACACA	742.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/2:0.43,0.54:28
chr12	24982706	rs35406045	TA	T	6800.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:45,160:0.78:205
chr12	24982721	rs7398085	A	G	6872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=5.734;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.795;QD=30.01;ReadPosRankSum=3.661;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:54,175:0.76:229
chr12	24982726	rs28678340	G	A	10241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.433;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=6.467;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.850;QD=31.22;ReadPosRankSum=4.502;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:62,266:0.81:328
chr12	25031449	rs6487436	A	G	12800.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr12	25047517	rs60686976	A	G	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.094;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:44,30:0.41:74
chr12	25054891	rs2291894	G	A	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:84,113:0.57:197
chr12	25147300	rs699030	G	C	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	25148755	rs864161	C	G	31894.77	.	AC=2;AF=1.00;AN=2;DB;DP=1277;set=Intersection	GT:AD:AF:DP	1/1:0,1257:1.00:1257
chr12	25232451	rs12310579	C	G	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:182,222:0.55:404
chr12	25240964	rs866510	G	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	25241224	rs859154	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	25242595	rs7969931	C	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr12	25242776	rs10743538	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	25243115	rs1908946	G	C	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:107,198:0.65:305
chr12	25249743	rs10842464	T	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	25249785	rs10771166	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:48,86:0.64:134
chr12	25253978	rs111489594	CT	C	130.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	25254975	rs7303889	A	C	6462.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:249,299:0.55:548
chr12	25257166	rs12828225	T	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr12	25257182	rs34133737	GA	G	958.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr12	25260675	rs113123645	C	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr12	25261735	rs859146	G	T	13389.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.51;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr12	25261759	.	T	TAAAAAAAAAAAAAAA	758.73	.	AC=2;AF=1.00;AN=2;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=42.15;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	25267560	rs191506882	T	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr12	25272027	rs2291365	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,69:0.59:117
chr12	25274593	rs2220195	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr12	25297713	rs7971062	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	25299921	rs11047863	G	A	13029.77	.	AC=1;AF=0.500;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	0/1:422,636:0.60:1058
chr12	25302481	rs10842485	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	25343516	rs10842501	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	25343707	rs10842502	C	T	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:57,69:0.55:126
chr12	25362217	rs9266	A	G	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr12	25368462	rs4362222	C	T	20707.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,798:1.00:798
chr12	25368593	.	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.926;QD=0.40;ReadPosRankSum=0.422;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:207,46:0.18:253
chr12	25388290	rs7133635	G	T	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:66,131:0.66:197
chr12	25398284	rs121913529	C	T	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:234,282:0.55:516
chr12	25671759	rs1479500	T	A	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.539;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:273,137:0.33:410
chr12	25673073	.	GATATACATAT	G	775.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr12	25673079	.	C	CAT	86.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr12	25673104	rs4426208	A	G	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=2.148;QD=21.96;ReadPosRankSum=-0.124;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr12	25678995	rs199719770	T	TA	1026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.460;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:131,86:0.40:217
chr12	25679841	rs35628916	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:108,73:0.40:181
chr12	25679932	rs1705419	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	25699523	rs278990	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:108,68:0.39:176
chr12	26231843	rs7133685	G	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	26231898	rs4963952	G	A	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	26232013	rs7133634	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	26275166	rs76117681	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.488;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr12	26276630	rs149995893	C	T	4771.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:94,223:0.70:317
chr12	26276758	rs7972225	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	26377232	rs34624361	T	C	8920.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:227,423:0.65:650
chr12	26540338	rs371570385	T	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:29,97:0.77:126
chr12	26568132	rs75530413	A	G	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	26580814	rs1818135	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr12	26596618	rs2220406	C	T	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	26628357	.	C	CA	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-3.784;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:265,57:0.18:322
chr12	26636742	rs80161222	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:287,102:0.26:389
chr12	26639155	rs2230382	G	A	8972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.461;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:250,428:0.63:678
chr12	26639346	rs36049222	T	TA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.000;QD=8.58;ReadPosRankSum=-1.709;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	26639921	rs116152623	G	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:63,131:0.68:194
chr12	26752897	rs12832680	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	26755546	rs3736185	C	T	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	26774089	rs2230373	T	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:345,129:0.27:474
chr12	26777379	rs2880875	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	26784850	rs2230372	G	A	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.202;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:337,145:0.30:482
chr12	26809537	rs2306550	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,60:0.75:80
chr12	26811045	rs12313993	T	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.635;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:93,31:0.25:124
chr12	26816496	rs1375656	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	26819095	.	A	ATAGATAGATAGATAGATAGAT,ATAGATAGATAGATAGATAGATAGAT	70.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	0/1:0.67:6
chr12	26834792	rs11048647	A	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:23,80:0.78:103
chr12	26834804	rs111626763	T	TACTC	6622.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	26848410	rs1982385	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	26848663	rs3830260	A	AT	1671.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	26868289	rs2230383	C	T	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:142,236:0.62:378
chr12	26868575	rs35163907	AG	A	2740.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:21,76:0.78:97
chr12	26869233	rs7957289	C	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:59,145:0.71:204
chr12	26874138	rs11407207	G	GT	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr12	26875565	rs2291261	G	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	26878543	rs56056442	T	C	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:70,144:0.67:214
chr12	26943170	rs7314747	A	T	13244.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr12	27059149	rs1488053	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr12	27059224	rs1488052	G	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	27059422	rs1488051	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr12	27064022	rs150389445	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:105,47:0.31:152
chr12	27064076	rs113587359	T	C	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.080;QD=4.77;ReadPosRankSum=-0.018;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:215,98:0.31:313
chr12	27067258	rs112006488	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr12	27078791	rs201480298	GA	G	695.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.221;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr12	27081566	rs2029309	C	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	27087703	rs708158	T	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	27107268	rs2129092	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:161,53:0.25:214
chr12	27109412	rs67397655	CAT	C	58.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=19.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	27109655	rs2046937	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.287;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	27136626	rs56054487	G	T	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr12	27143303	rs143254245	T	C	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:63,157:0.71:220
chr12	27152666	rs7314394	T	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	27175494	rs3963548	T	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	27175640	rs1872191	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	27179551	rs145100138	CTTATT	C	631.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr12	27181513	rs8628	T	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr12	27234200	rs708165	T	C	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:116,254:0.69:370
chr12	27234878	rs74075111	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.657;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:103,35:0.25:138
chr12	27234914	rs61741737	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:137,49:0.26:186
chr12	27234999	rs708167	T	C	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:90,179:0.67:269
chr12	27235381	rs708168	G	A	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr12	27235547	rs138774709	C	CT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.784;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	27300420	rs841618	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	27461984	rs6487599	T	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.74;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	27470682	rs2242185	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	27470788	rs10771336	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr12	27470866	rs6487601	G	A	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	27485974	rs71524338	G	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-1.152;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	27486168	rs62758860	GA	G	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	27521056	rs67846194	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.838;QD=3.35;ReadPosRankSum=-3.129;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr12	27521065	rs71541521	A	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.855;QD=4.86;ReadPosRankSum=-1.323;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr12	27521071	rs71541522	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.968;QD=5.13;ReadPosRankSum=-0.872;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr12	27521075	rs66542729	CT	C	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr12	27529219	rs4964059	A	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=0.435;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr12	27553387	rs73077836	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	27553794	rs2927028	C	T	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	27554699	rs4409932	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	27569025	rs1256955	G	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	27623433	rs35052632	G	GT	880.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27623490	rs776199	A	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	27623558	rs395098	C	T	9974.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr12	27623728	rs396407	T	C	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	27623751	rs411432	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	27625823	rs386428	A	T	5221.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:135,246:0.65:381
chr12	27625879	rs381905	G	A	5482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.73;ReadPosRankSum=0.065;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:83,148:0.64:231
chr12	27625887	rs401739	T	C	5312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.11;ReadPosRankSum=-1.255;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:67,129:0.66:196
chr12	27627676	rs424880	C	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:170,73:0.30:243
chr12	27627805	rs411816	G	A	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:109,209:0.66:318
chr12	27641375	rs448088	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.037;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr12	27641473	rs412978	G	A	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	27647420	.	TTTA	T	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.790;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	27648710	rs3751223	C	T	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chr12	27648786	rs306646	A	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	27648824	rs3751225	A	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr12	27786088	rs142342304	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=1.921;QD=4.53;ReadPosRankSum=-0.076;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	27786115	rs3751231	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr12	27799341	rs59630572	CT	C	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.10;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	27800503	rs7959186	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.089;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	27800576	rs34792131	C	CT	1568.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr12	27800746	rs2194816	G	T	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	27803097	rs367885450	CCT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.238;QD=0.17;ReadPosRankSum=-1.240;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:353,39:0.10:392
chr12	27807906	rs7979973	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	27811649	rs10771354	G	T	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	27813754	rs7132997	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	27813903	rs7133222	C	T	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	27813961	rs7133231	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	27813973	rs7133328	C	T	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	27813981	rs7133545	G	C	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	27814085	rs6487629	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	27817408	rs34613698	CT	C	4276.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.219;QD=24.58;ReadPosRankSum=1.278;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:2,172:0.99:174
chr12	27820302	rs2033024	C	T	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	27826780	rs2052673	T	G	3650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=-0.795;SOR=0.619;set=HC	GT:AD:AF:DP	1/1:7,177:0.96:184
chr12	27832308	rs10743607	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	27845924	rs3764010	C	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr12	27849795	rs929948	CA	TG	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr12	27867706	rs11049106	C	T	4766.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=3.956;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.91;ReadPosRankSum=-0.620;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,183:0.99:184
chr12	27869454	rs143869600	CT	C	756.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr12	27915718	rs10842975	A	T	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	27944858	rs2288232	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	27950067	rs138908506	C	CA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.043;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr12	28336713	rs61920228	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	28410061	rs76960133	A	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr12	28410103	rs190601871	G	T	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.994;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:123,43:0.26:166
chr12	28412398	.	GT	G	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.200;QD=6.23;ReadPosRankSum=-1.773;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:69,98:0.59:167
chr12	28457618	rs6487674	A	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	28544464	rs3741760	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	28605426	rs10771427	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	28724216	rs6487691	T	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	28726042	rs6487692	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	28726292	rs75276977	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr12	28732872	.	T	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.426;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	29446477	rs10679359	T	TA	1757.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:65,100:0.61:165
chr12	29462224	rs6487807	C	G	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-2.284;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:43,96:0.69:139
chr12	29464942	.	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr12	29485449	rs10743656	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:22,64:0.74:86
chr12	29509450	rs1035606	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr12	29509513	rs1035607	A	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	29510549	rs10843392	A	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.565;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr12	29520017	rs12831751	A	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	29542495	rs116016018	C	T	5230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=1078;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.505;QD=4.91;ReadPosRankSum=1.720;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:734,331:0.31:1065
chr12	29586952	rs67142894	TTCTC	T	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	29593769	rs2304458	A	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	29598373	rs7133304	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr12	29604392	rs1347570	C	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:160,61:0.28:221
chr12	29607931	rs2060570	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr12	29625875	rs12316665	C	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr12	29625968	rs35183403	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:114,34:0.23:148
chr12	29628016	rs2043623	G	A	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	29630081	rs7975356	G	A	12675.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr12	29630386	rs16934306	A	G	2218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.698;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:382,145:0.28:527
chr12	29639186	rs3847680	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:281,121:0.30:402
chr12	29648275	rs10843438	G	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.767;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:191,81:0.30:272
chr12	29649427	rs7295558	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr12	29650361	rs10771544	A	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	29650702	rs822879	C	T	5664.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	29664877	rs7315323	G	A	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:61,132:0.68:193
chr12	29670262	rs3910443	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.214;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr12	29736480	rs2113879	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	29736523	rs2288230	G	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	29736553	rs2113880	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	29786005	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.240;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	29920745	rs35316467	G	GTA	1411.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr12	29920790	rs148049141	C	CACAT	4653.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:48,114:0.70:162
chr12	29921074	rs302316	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	29936613	rs184221	T	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.861;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr12	30783743	rs2278558	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-1.396;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr12	30809492	rs7974489	G	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	30814043	rs67741303	CTATTA	C	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:32,5:0.14:37
chr12	30814259	rs10771753	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=3.407;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:98,52:0.35:150
chr12	30815157	rs2118780	A	T	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	30816375	rs79690683	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,26:0.27:98
chr12	30818081	rs10843807	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.507;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr12	30818406	rs10843808	T	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	30823971	rs1054426	A	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:305,132:0.30:437
chr12	30827086	rs2289301	G	C	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	30837525	rs16906676	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	30841200	rs6487931	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-2.052;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr12	30863085	rs7137533	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:220,83:0.27:303
chr12	30864457	rs7962761	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr12	30864596	rs7962702	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:256,116:0.31:372
chr12	30864725	rs7962737	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:143,54:0.27:197
chr12	30866888	rs2099028	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	30868002	rs13656	C	T	10688.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr12	30878859	rs7304879	G	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	30881488	rs11406794	C	CA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.136;QD=7.09;ReadPosRankSum=1.989;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr12	30881809	rs2304630	T	C	8554.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr12	30948848	rs256653	G	C	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:344,177:0.34:521
chr12	30949206	rs256654	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:147,76:0.34:223
chr12	31131712	rs35097	T	C	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,64:0.75:85
chr12	31132479	rs35096	A	C	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:71,155:0.69:226
chr12	31135478	rs35089	T	C	5677.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:126,270:0.68:396
chr12	31136256	rs35088	C	T	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr12	31231230	rs7299908	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr12	31237026	rs28559720	A	G	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	31237372	rs3930906	A	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	31237700	rs3881296	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	31238075	rs4931428	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	31240862	rs7308754	A	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr12	31240925	rs7308773	A	G	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	31240960	rs7309189	G	A	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr12	31242271	rs2005896	G	A	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,122:0.97:126
chr12	31242314	rs2005897	T	C	7300.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;MQRankSum=7.411;QD=25.44;ReadPosRankSum=-1.921;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:4,283:0.99:287
chr12	31242399	rs3881298	T	C	16695.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr12	31242440	rs2075318	A	G	13682.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr12	31244703	rs374684190	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.375;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=50.77;MQRankSum=-12.559;QD=0.24;ReadPosRankSum=-0.987;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:598,92:0.13:690
chr12	31244846	rs1808348	C	G	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	31244924	rs1808349	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	31245741	rs2075321	A	G	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	31245916	rs61273537	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:155,57:0.27:212
chr12	31246371	rs10843882	C	T	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	31246387	rs181613753	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:97,41:0.30:138
chr12	31246438	rs7970074	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=39.64;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	31247682	rs61917225	T	C	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=5.733;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-1.352;QD=4.46;ReadPosRankSum=0.465;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:331,137:0.29:468
chr12	31249118	rs9788128	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	31249225	rs9788047	T	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.42;QD=28.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	31249244	rs9788048	T	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.67;QD=29.58;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	31249861	rs2075322	C	G	19200.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr12	31250669	rs7971579	G	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	31250768	rs2909388	C	T	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.97;QD=30.84;SOR=2.608;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	31253995	rs1046456	C	T	30590.77	.	AC=2;AF=1.00;AN=2;DB;DP=1170;set=Intersection	GT:AD:AF:DP	1/1:0,1167:1.00:1167
chr12	31254134	rs184165998	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.904;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.584;QD=3.82;ReadPosRankSum=0.663;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:88,28:0.24:116
chr12	31254642	rs7952861	T	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	31254701	rs7966366	G	T	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	31254752	rs7966272	C	T	7411.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=26.28;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	31255263	rs10771803	G	A	29573.77	.	AC=2;AF=1.00;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	1/1:1,943:1.00:944
chr12	31255280	rs61918673	G	A	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	0/1:783,266:0.25:1049
chr12	31255745	rs191687936	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr12	31255772	rs58740356	A	AG	2456.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	31256075	rs3825318	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	31256546	rs1046457	G	A	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr12	31256686	rs142842381	T	C	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,98:0.72:137
chr12	31256905	rs1046458	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	31264743	rs4930953	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.57;QD=25.05;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	31264770	rs1053552	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	31265823	rs2302848	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.88;QD=24.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	31265872	rs2302849	C	T	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	31265925	rs2302850	C	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	31265983	rs1053534	G	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	31266042	rs2302853	C	T	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.63;QD=25.08;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	31267744	rs7968684	A	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	31269189	rs25559	C	CATCAT	996.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.65;QD=52.46;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	31270076	rs58035829	A	C	1539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.586;MLEAC=2;MLEAF=1.000;MQ=48.91;MQRankSum=-1.134;QD=33.47;ReadPosRankSum=0.227;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr12	31270080	rs59046327	G	GAAA	1401.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.371;MLEAC=2;MLEAF=1.000;MQ=42.52;MQRankSum=-1.706;QD=45.22;ReadPosRankSum=0.280;SOR=1.914;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr12	31270149	rs7316147	G	C	801.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.559;MLEAC=2;MLEAF=1.000;MQ=50.26;MQRankSum=-1.067;QD=40.09;ReadPosRankSum=-1.563;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	31270150	rs7315923	C	A	801.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.559;MLEAC=2;MLEAF=1.000;MQ=50.26;MQRankSum=-1.067;QD=40.09;ReadPosRankSum=-1.563;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	31270171	rs7301557	T	C	785.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.337;MLEAC=2;MLEAF=1.000;MQ=53.31;MQRankSum=-0.792;QD=41.36;ReadPosRankSum=-0.643;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr12	31282765	rs2536839	A	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr12	31282784	rs35666624	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:36,62:0.63:98
chr12	31284251	rs28460499	A	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	31285101	rs2933405	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	31285169	rs2287449	A	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:146,91:0.38:237
chr12	31285214	rs2287450	A	G	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:114,191:0.63:305
chr12	31285991	rs3853618	A	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=0.841;QD=14.31;ReadPosRankSum=-0.535;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	31286189	rs3844571	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.65;QD=25.67;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	31288835	rs200865477	G	GA	30.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:43,7:0.14:50
chr12	31288884	rs4931444	G	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	31288955	rs11051266	G	A	1153.73	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:185,76:0.29:261
chr12	31291163	rs78835222	G	A	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:94,206:0.69:300
chr12	31297722	rs55758709	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	31297871	rs12309295	G	C	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-0.188;QD=4.15;ReadPosRankSum=-1.211;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:243,94:0.28:337
chr12	31300747	.	T	C	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-10.149;QD=11.37;ReadPosRankSum=0.589;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:136,64:0.32:200
chr12	31300754	rs116358569	T	C	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.417;MLEAC=1;MLEAF=0.500;MQ=47.64;MQRankSum=-10.357;QD=10.86;ReadPosRankSum=0.859;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:144,67:0.32:211
chr12	31300891	rs56144986	C	A	4141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-0.501;QD=8.32;ReadPosRankSum=0.042;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:371,127:0.26:498
chr12	31300900	rs189360161	C	T	4306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-0.249;QD=8.10;ReadPosRankSum=-0.152;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:394,138:0.26:532
chr12	31301888	rs11051274	T	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.417;QD=3.61;ReadPosRankSum=1.261;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:176,61:0.26:237
chr12	31307173	rs4931449	A	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.981;QD=8.36;ReadPosRankSum=-1.494;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	31310983	rs7971718	G	A	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:258,99:0.28:357
chr12	31311035	rs114231864	G	C	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:75,177:0.70:252
chr12	31311973	rs61733843	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=53.58;MQRankSum=-0.795;QD=4.26;ReadPosRankSum=0.877;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:196,78:0.28:274
chr12	31359083	rs61917095	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:215,107:0.33:322
chr12	31359210	rs2164498	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	31435608	rs59813982	AT	A,ATT	59.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	0/1:0.21:89
chr12	31476881	rs78044110	C	A	2861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.39;ReadPosRankSum=2.573;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:461,191:0.29:652
chr12	31478036	rs77154299	C	G	2672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-2.438;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:352,159:0.31:511
chr12	31545103	rs708218	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	31545381	rs792874	A	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:79,151:0.66:230
chr12	31545682	rs7975761	A	G	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:96,196:0.67:292
chr12	31551002	.	CT	C	45	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=7;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=45;QD=37.0;SC=CAACTTTCTTCTTTTTAAAAT;SbPval=1.0;Source=Platypus;TC=3;TCF=2;TCR=1;TR=2;WE=31551010;WS=31550999;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr12	31551350	rs1798769	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr12	31568221	rs793159	C	T	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:54,123:0.69:177
chr12	31585980	rs201642960	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.013;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr12	31600400	rs7976644	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr12	31604928	rs3205175	G	C	6733.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:159,316:0.67:475
chr12	31605044	rs1056320	G	T	6939.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:181,323:0.64:504
chr12	31633258	rs113784337	G	GT	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr12	31648723	rs4931506	G	A	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:112,220:0.66:332
chr12	31648948	rs4931507	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	31693814	rs1262391	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	31693975	rs34225458	T	TA	4317.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.382;QD=18.94;ReadPosRankSum=1.275;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:13,215:0.94:228
chr12	31814741	rs7959989	G	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr12	31820564	rs201646763	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.925;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr12	31826778	rs76930395	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr12	31850220	rs2388926	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr12	31862107	.	T	TA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.026;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr12	31908050	rs6488005	A	C	16330.77	.	AC=1;AF=0.500;AN=2;DB;DP=1099;set=Intersection	GT:AD:AF:DP	0/1:330,760:0.70:1090
chr12	31944985	rs3759295	T	G	4797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=1249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.212;QD=3.85;ReadPosRankSum=1.304;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:915,330:0.27:1245
chr12	31945064	rs61745042	C	T	7914.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:148,355:0.71:503
chr12	32134240	rs2388982	C	T	17501.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr12	32134328	rs61353224	C	T	4058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=1.407;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:589,248:0.30:837
chr12	32134638	rs2166807	T	C	14266.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr12	32134943	rs10771894	A	G	8127.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr12	32135441	rs3759301	T	C	12988.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr12	32136918	rs16919127	C	A	10243.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	32137104	rs149993652	G	A	5588.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:119,267:0.69:386
chr12	32138325	rs56682866	T	C	2624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.545;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:465,178:0.28:643
chr12	32138725	rs16919139	A	G	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:50,96:0.66:146
chr12	32138924	rs7302975	T	C	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	32138974	rs35804480	CT	C	2055.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	32140361	rs111427763	C	CT	167.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-0.000;QD=11.94;ReadPosRankSum=0.551;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr12	32520416	rs200392801	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=0.931;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	32530257	rs7298381	G	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr12	32552769	rs2651369	C	G	4793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-0.256;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:96,220:0.70:316
chr12	32639156	rs6488061	C	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr12	32687478	rs12304508	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.323;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	32735236	rs904582	C	T	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:264,115:0.30:379
chr12	32753502	.	T	TTTTC	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.000;QD=4.88;ReadPosRankSum=0.534;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	32763668	rs1004969	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	32764184	rs10844253	G	A	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.348;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:308,114:0.27:422
chr12	32772620	rs73083501	C	T	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:70,155:0.69:225
chr12	32777362	rs11052110	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr12	32777889	rs17539792	T	G	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr12	32778039	rs7970584	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.449;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr12	32778581	rs11052113	T	C	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:75,125:0.62:200
chr12	32778742	rs17539848	T	G	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:73,199:0.73:272
chr12	32786700	rs59572242	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=1.406;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	32791796	rs4575368	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr12	32793164	rs74073032	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,63:0.31:204
chr12	32854200	rs11052192	A	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	32854366	rs10844308	A	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.044;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:134,42:0.24:176
chr12	32854602	rs9737752	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	32859757	rs10844309	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:51,13:0.20:64
chr12	32860302	rs2272238	G	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.887;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr12	32866399	rs7971495	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.142;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	32866403	rs7958074	T	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.042;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	32871481	rs10844314	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr12	32875406	rs10844318	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.166;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr12	32884187	rs138148657	AAAAAGCATTTTTCATG	A	68.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr12	32884741	rs144761384	A	AAAAAAAC	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.176;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.905;QD=11.98;ReadPosRankSum=1.512;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr12	32890161	rs7302970	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.838;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr12	32890678	rs59000311	T	C	1714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.18;ReadPosRankSum=-1.557;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,42:0.76:55
chr12	32890685	rs2177704	C	T	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.90;ReadPosRankSum=-1.391;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,46:0.75:61
chr12	32890912	rs4506737	T	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	32896365	rs1059422	GA	CT	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	0/1:106,49:0.32:155
chr12	32897557	rs11052213	G	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr12	32897586	rs10844336	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.911;QD=5.90;ReadPosRankSum=-0.042;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr12	32900298	.	C	CT	3735.73	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:56,122:0.69:178
chr12	32908237	rs11539445	C	A	3545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=907;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.084;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:650,246:0.27:896
chr12	32908518	rs11539444	G	A	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:493,215:0.30:708
chr12	32949029	rs149968852	A	AG	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr12	32949252	.	AC	A	229	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=9;HapScore=1;MGOF=22;MMLQ=27;MQ=59.89;NF=1;NR=14;PP=229;QD=16.0666666667;SC=GAAAAAAAAAACAAAACACTT;SbPval=0.54;Source=Platypus;TC=59;TCF=3;TCR=56;TR=15;WE=32949261;WS=32949232;set=Platypus	GT:AD:AF:DP	1/0:44,15:0.25:59
chr12	32955642	rs12299276	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	32955647	rs7975824	C	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	32974218	rs7967264	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.841;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr12	32974245	rs10772008	C	T	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr12	33021934	rs1046116	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:125,82:0.40:207
chr12	33049755	.	C	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.46;ReadPosRankSum=0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	33529647	rs10844567	A	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-1.586;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr12	33532720	rs145334384	C	T	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.146;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:170,49:0.22:219
chr12	33533023	rs74944663	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr12	33535248	rs78089694	A	G	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.025;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:106,54:0.34:160
chr12	33559673	rs16920985	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=-0.054;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	33576706	rs16921004	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	33576990	rs7980799	A	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	33578997	.	TCACA	T,TCACACA	1139.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=93;set=Intersection	GT:AF:DP	1/2:0.35,0.47:75
chr12	34182439	.	T	C	139.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	34182671	.	ATTTTTTTTTTT	A,AT	4427.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=8.225;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.01;MQRankSum=-0.075;QD=36.90;ReadPosRankSum=2.103;SOR=1.016;set=HC	GT:AD:AF:DP	1/2:2,83,35:0.69,0.29:120
chr12	38711020	rs11183276	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=1.180;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	38712142	rs6582584	C	G	14677.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr12	38715000	rs35518352	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:61,82:0.57:143
chr12	38717678	rs6582607	T	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.822;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-0.211;QD=12.43;ReadPosRankSum=-0.661;SOR=1.586;set=HC	GT:AD:AF:DP	0/1:24,31:0.56:55
chr12	39047890	rs115353283	G	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr12	39079508	rs3759140	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	39087687	rs826877	A	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	39117384	rs844115	C	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	39124173	rs5797589	G	GA	827.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	39156128	rs114254112	T	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.09;ReadPosRankSum=-1.242;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	39161514	rs61740523	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.530;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr12	39161669	rs143209192	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	39266873	rs11833328	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-0.802;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	39698813	rs113883947	C	T	194.79	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	39705173	rs187664020	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-1.649;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	39705174	rs952542	T	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-1.454;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	39723969	rs77115887	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr12	39725705	rs76467693	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	39752200	rs113211120	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr12	39967667	rs200731200	T	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:118,69:0.37:187
chr12	39973264	rs74837481	T	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr12	40001547	.	G	GT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=-1.145;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	40037727	rs10735878	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.201;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	40077028	rs10047563	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.11;ReadPosRankSum=0.792;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	40085906	rs73270414	A	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.061;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	40265659	rs146020551	A	G	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:164,91:0.36:255
chr12	40345185	rs11446411	G	GA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.134;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr12	40442111	rs10878036	C	T	134.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	40499166	rs369644372	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,47:0.41:115
chr12	40619082	rs2256408	G	A	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	40619301	rs2723273	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	40619542	rs2256286	A	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	40626230	rs1352879	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	40626285	rs1352878	C	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	40681352	.	TA	T	682.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr12	40702846	rs7305344	A	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=2.071;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	40703087	rs10650388	C	CGT	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr12	40708922	rs1427266	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	40709185	rs721713	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:100,67:0.40:167
chr12	40713759	rs1896252	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=-0.619;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	40713834	rs1427263	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.483;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	40713873	rs11176013	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.715;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	40714009	rs11564205	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.80;ReadPosRankSum=1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	40714785	rs10878368	A	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:112,114:0.50:226
chr12	40715013	rs7307276	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.55;ReadPosRankSum=-1.919;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	40716015	rs7137665	C	T	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-0.348;QD=7.80;ReadPosRankSum=1.221;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:44,34:0.44:78
chr12	40716260	rs10878371	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr12	40722081	rs112543959	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	40757114	rs10626458	A	ACATG	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	40787385	rs7968721	C	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	40793993	rs1820544	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	40799969	rs10784595	C	T	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.77;ReadPosRankSum=0.739;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:69,73:0.51:142
chr12	40799975	rs10784596	G	C	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.96;ReadPosRankSum=0.356;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr12	40802150	rs1019709	G	A	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	40805875	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.871;QD=1.78;ReadPosRankSum=-0.293;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr12	40808832	rs994798	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	40815548	rs6581732	T	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	40820208	rs11176575	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr12	40821176	rs7955308	G	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	40822012	rs7960062	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	40827479	rs2162470	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr12	40830599	rs112760369	CGTGT	C,CGT	1418.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.59;MQRankSum=0.424;QD=28.95;ReadPosRankSum=-1.272;SOR=2.170;set=HC	GT:AD:AF:DP	1/2:1,13,35:0.27,0.71:49
chr12	40837898	rs11564109	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.085;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr12	40840467	rs17128172	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.615;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	40841781	rs1820547	A	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	40843429	rs75570855	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	40844102	rs17128213	T	C	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.716;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:170,140:0.45:310
chr12	40852398	rs1035811	T	C	75.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	40858997	rs148418437	T	G	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:88,111:0.56:199
chr12	40859082	rs17128255	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr12	40859899	rs114556941	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=11.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-1.603;SOR=0.108;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr12	40894867	.	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr12	40895492	.	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.501;QD=2.05;ReadPosRankSum=1.655;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr12	40910157	rs59005564	A	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	40910545	rs1122863	G	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40911713	rs9668092	T	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	40912034	rs56036709	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40912162	rs17128391	T	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	40912212	rs17128396	C	T	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:204,107:0.34:311
chr12	40912684	rs73116206	A	T	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	40912953	rs112863400	G	GA,GAA	1097.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;QD=24.39;SOR=1.038;set=HC	GT:AD:AF:DP	1/2:0,22,23:0.49,0.51:45
chr12	40914379	rs73116213	T	G	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	40915474	rs58079549	CA	C	12531.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	40915480	rs56952712	G	A	12509.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	40916164	rs73117999	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	40916218	.	CTTTTTTTTTTTTTTT	C	754.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.72;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	40916281	rs55642775	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	40917045	.	T	TA	466.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	40917312	rs2920820	C	T	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	40917571	rs73119906	T	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.181;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr12	40917664	rs73119908	T	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	40919119	rs56226314	T	C	8118.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-0.810;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:2,309:0.99:311
chr12	40920101	rs57721717	G	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=1.709;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:83,62:0.43:145
chr12	40920110	rs2933351	T	C	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.01;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	40920332	rs61382395	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	40920872	.	CTT	C,CT	436.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.018;SOR=0.706;set=HC	GT:AD:AF:DP	1/2:7,15,17:0.38,0.44:39
chr12	40921902	rs4768287	C	T	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	40922091	rs4768288	A	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	40922104	rs1444220	A	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	40924306	rs80042247	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr12	40924446	rs73106609	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	40924470	rs2588403	T	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	40925108	rs4768289	A	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	40925691	rs17128416	C	T	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	40925855	rs73106627	T	C	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	40925908	rs7139187	A	C	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	40926203	rs11835376	T	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	40926454	rs10506166	T	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	40926679	rs17128426	G	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	40926922	rs7956464	C	A	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:197,138:0.41:335
chr12	40927890	rs7977973	T	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	40928476	rs113966690	T	TTCC	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40928539	rs73106651	A	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40929425	rs113734402	TA	T	187.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.07;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	40929482	rs34442007	GT	G	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.983;QD=5.47;ReadPosRankSum=0.287;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr12	40930423	rs113013425	A	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr12	40930709	rs7971316	G	C	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,252:0.99:254
chr12	40931536	rs77440952	G	A	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:85,100:0.54:185
chr12	40932661	rs11177108	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	40935231	rs11177133	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40935632	rs11177134	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	40938751	rs7304329	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	40938944	rs7133943	C	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	40938975	rs7133098	G	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	40939066	rs139186904	CA	C	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr12	40939231	rs7134318	C	T	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:97,112:0.54:209
chr12	40940487	rs12231675	T	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr12	40942311	rs11177162	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr12	40942463	rs78586058	GTTT	G,GT	3593.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=4.451;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.000;QD=23.80;ReadPosRankSum=0.667;SOR=1.288;set=HC	GT:AD:AF:DP	1/2:19,70,62:0.46,0.41:151
chr12	40942491	rs145855541	A	ACT	4958.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=43.50;SOR=1.589;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	40943329	rs1463738	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	40943730	rs80014625	G	A	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:222,164:0.42:386
chr12	40943970	rs1492316	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	40944697	rs11177169	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40950883	rs7487017	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	40951596	rs3751167	A	G	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-1.267;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,54:0.55:99
chr12	40951605	rs3751168	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.61;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	40951756	rs3829294	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr12	40951845	rs3751169	G	A	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	40951950	rs3751172	G	A	9936.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	40952934	rs1352938	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	40954482	rs3751175	G	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	40954998	rs146275060	C	CT,CTT	570.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.688;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=-2.210;SOR=1.282;set=HC	GT:AD:AF:DP	1/2:3,10,16:0.34,0.55:29
chr12	40961265	rs11177260	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	40964206	rs7979493	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	41312365	rs10879356	A	T	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	41327426	rs55976072	TG	GT	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	41330531	rs2289522	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	41337435	rs1056019	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr12	41387110	rs278911	C	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	41408134	rs397967	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr12	41463680	rs12297122	C	T	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	41463689	rs11179698	T	C	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	41585546	.	TTTTA	T	97	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=97;QD=51.0;SC=CATACCCAGATTTTATTTATT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=41585557;WS=41585536;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	41946453	rs285585	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	41946539	rs285584	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.875;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr12	41949370	rs285580	T	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	41949688	rs35738715	CA	C	142.52	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr12	41957568	rs157971	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	42481732	rs7972986	G	A	95.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	42481803	rs824722	G	A	136.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	42499538	rs61942483	TT	AC	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.68;ReadPosRankSum=0.833;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	42503505	rs824695	T	A	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	42513100	rs824690	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	42538320	rs112525075	G	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-2.533;QD=7.27;ReadPosRankSum=-1.080;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr12	42538334	rs181558534	C	A	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-2.577;QD=7.01;ReadPosRankSum=0.048;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr12	42538340	.	C	A	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-2.555;QD=7.10;ReadPosRankSum=-0.838;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr12	42538349	.	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-2.467;QD=7.70;ReadPosRankSum=-1.960;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr12	42538352	.	C	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-2.467;QD=7.70;ReadPosRankSum=-2.107;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr12	42538356	.	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-2.448;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr12	42538366	.	A	T	405.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.183;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=8.282;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-1.799;SOR=2.074;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr12	42538367	.	C	T	408.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.508;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=8.134;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-2.010;SOR=2.084;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr12	42538371	.	G	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.945;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.735;SOR=1.840;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr12	42592810	rs712124	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=-1.915;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	42629550	rs7960176	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	42629585	rs140363055	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr12	42632354	rs75085410	C	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.841;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	42632585	rs150186170	T	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr12	42707836	rs74078017	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	42717811	rs17091074	A	T	3506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.867;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:172,179:0.51:351
chr12	42717961	rs3747557	G	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr12	42726620	rs12581958	T	C	45.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.45;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	42729891	rs7296357	T	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr12	42737635	rs61471584	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr12	42737665	rs59844371	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr12	42737739	rs58826545	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	42749072	rs17091102	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr12	42778922	rs1669906	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr12	42835328	rs60616542	TA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.201;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr12	42836270	rs1452104	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	42839836	rs1669885	A	C	3654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.975;QD=8.72;ReadPosRankSum=-0.230;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:206,213:0.51:419
chr12	42853084	rs12658	C	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr12	42853520	rs1043652	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.86;ReadPosRankSum=1.668;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	42862431	rs74081707	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	42862750	rs2708062	T	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.20;ReadPosRankSum=0.566;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	42866065	rs2305422	A	G	104.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.00;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	43769718	rs7972295	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	43817445	rs6582463	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	43819298	rs10785430	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:215,126:0.37:341
chr12	43823316	rs12308771	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	43824042	rs10880489	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	43824316	rs11182071	A	G	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr12	43826277	rs201811876	T	TA	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.661;QD=5.60;ReadPosRankSum=-2.125;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:76,59:0.44:135
chr12	43827506	rs71913711	AACACAC	A	388.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	43833942	.	CTTTT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=-1.068;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	43846272	rs7307955	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	43847941	rs6582464	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	43860526	rs11182088	A	G	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-1.847;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:44,33:0.43:77
chr12	43886199	rs71091159	G	GAAAAA	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-0.239;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	43945603	rs275602	A	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	44124589	rs79600741	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	44130123	rs113047505	GA	G	672.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	44132250	rs10880558	T	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	44139805	rs11182246	A	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	44142489	rs147329578	TATA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr12	44148259	rs1057190	T	C	7997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-1.073;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:1,316:1.00:317
chr12	44148801	rs28477166	C	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=1.864;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr12	44177402	rs4251530	G	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	44180295	rs4251545	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.872;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr12	44196407	rs10880568	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	44198389	rs79235900	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	44338153	rs6582491	T	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	44404074	rs7980005	A	G	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:96,139:0.59:235
chr12	44404121	rs80285345	C	T	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:205,166:0.45:371
chr12	44604999	rs7132031	A	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr12	44916026	rs56318423	A	G	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.841;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr12	45004824	rs2305448	G	A	257.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	45004829	rs61323848	G	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-0.303;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	45059237	rs2290353	T	G	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.781;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr12	45059558	rs78543781	A	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	45097643	rs139956751	G	GA	1004.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr12	45170006	rs4768572	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr12	45268964	rs2703059	A	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr12	45269439	rs11373833	G	GA	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	45270548	rs115558587	C	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	45410075	rs1224442	A	G	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-1.774;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:136,135:0.50:271
chr12	45417666	rs2731038	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr12	45429821	rs61739294	T	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr12	45429911	rs2160987	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr12	45444516	rs139910495	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr12	45444639	rs111512451	G	A	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:75,91:0.55:166
chr12	45566866	rs7301571	T	C	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.746;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:49,48:0.49:97
chr12	45567192	rs61742052	G	A	5674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.886;QD=11.49;ReadPosRankSum=-0.867;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:213,281:0.57:494
chr12	45610245	rs184274302	G	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr12	45622013	rs199752928	A	AG	1250.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.354;QD=12.51;ReadPosRankSum=3.209;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:64,36:0.36:100
chr12	45622014	.	A	T	1259.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=12.72;ReadPosRankSum=3.380;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr12	45664213	rs10748415	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	45695735	rs4140756	C	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	45695828	rs7299561	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:142,99:0.41:241
chr12	45771901	rs36059278	GT	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=0.424;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr12	45816671	rs12299652	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,84:0.48:174
chr12	46149543	rs59340060	C	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-2.531;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr12	46245077	rs7296694	G	A	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:131,153:0.54:284
chr12	46321417	rs11574971	G	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr12	46321514	rs7315731	A	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr12	46338992	rs11348395	CA	C	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr12	46367903	rs10880879	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	46367953	rs74081611	C	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr12	46602752	rs78363391	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	46633328	rs7959095	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	46662485	rs2242355	G	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	46755112	rs7961994	A	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	46758494	rs2307061	A	G	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	46759017	rs7968173	T	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	46759057	rs12307969	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr12	46761127	rs10880959	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	47159123	rs4768756	A	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	47162938	rs2216433	T	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	47168898	rs180414	G	A	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	47170621	rs12316767	C	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr12	47173830	rs2287471	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr12	47186708	rs74084202	T	C	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:144,114:0.44:258
chr12	47581629	rs832733	T	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	47758032	rs215383	A	G	2865.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=-1.286;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:2,110:0.98:112
chr12	47761212	rs58616	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:124,99:0.44:223
chr12	47761298	rs75695220	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:145,75:0.34:220
chr12	47761313	rs11419253	A	AT	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.135;QD=3.60;ReadPosRankSum=-0.660;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:104,51:0.33:155
chr12	48080730	rs10875680	T	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=1.124;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr12	48081539	rs7136422	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	48096730	rs2057730	A	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.68;ReadPosRankSum=-0.742;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	48104746	rs1235152	G	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	48110325	rs1235153	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	48114761	rs929269	C	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr12	48132451	rs2072116	T	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,62:0.46:134
chr12	48142026	rs73105859	C	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr12	48142418	rs757281	C	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	48143095	rs149061709	G	GCTCTGGT	4870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=3.020;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:193,120:0.38:313
chr12	48143360	rs757280	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr12	48144243	rs757279	A	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	48144925	rs2016123	T	C	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	48145104	rs1018939	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	48145153	rs757287	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr12	48145171	rs757286	C	T	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=0.454;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:45,68:0.60:113
chr12	48151575	.	T	A	140.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	48172778	rs73105899	C	G	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr12	48178127	rs3192737	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	48178465	rs3815138	T	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:144,99:0.41:243
chr12	48179402	rs3815131	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr12	48179463	rs3815130	C	T	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	48180508	rs2240108	C	T	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:184,134:0.42:318
chr12	48181671	rs76438414	C	T	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:128,174:0.58:302
chr12	48185167	rs11832133	G	C	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:158,118:0.43:276
chr12	48185356	rs2240105	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr12	48187210	rs76622311	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr12	48190044	rs11831883	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:102,90:0.47:192
chr12	48190166	rs11831940	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr12	48190985	rs12820931	C	T	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:297,159:0.35:456
chr12	48192062	rs34922454	A	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	48192843	rs79137820	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	48195939	rs2525051	G	C	24657.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=0.204;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:2,966:1.00:968
chr12	48196073	rs115673706	C	T	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.005;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:133,110:0.45:243
chr12	48238757	rs731236	A	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr12	48238837	rs7975232	C	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	48240365	rs11574106	G	GC	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	48251533	rs11168266	C	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	48259126	rs12717991	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	48272895	rs2228570	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr12	48358279	rs11609253	C	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	48360620	rs2286024	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	48360947	.	T	TA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.648;QD=3.00;ReadPosRankSum=1.530;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:143,69:0.33:212
chr12	48361910	rs12306869	C	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.095;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:83,54:0.39:137
chr12	48367427	rs61048429	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	48367829	rs1635560	G	A	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:100,140:0.58:240
chr12	48369684	rs73297147	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:88,52:0.37:140
chr12	48370423	rs41272761	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=1.843;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:61,37:0.38:98
chr12	48370722	rs73297150	C	A	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:259,164:0.39:423
chr12	48370791	rs41272757	A	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:145,104:0.42:249
chr12	48371011	rs41272751	T	C	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:144,122:0.46:266
chr12	48371340	rs41272745	T	C	8177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=1.574;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:283,217:0.43:500
chr12	48371344	rs41272043	C	G	8348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=0.474;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:288,224:0.44:512
chr12	48371679	rs57550917	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,39:0.35:110
chr12	48371720	rs56265470	T	G	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:119,73:0.38:192
chr12	48371767	rs58279970	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:154,110:0.42:264
chr12	48372077	rs1793947	C	T	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.179;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:136,80:0.37:216
chr12	48372333	rs73297157	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr12	48372583	rs72431580	TTCC	T	2421.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr12	48373085	rs116357910	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.230;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.207;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	48373097	rs74086449	T	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.624;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.578;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	48373101	rs115291873	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=1.276;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	48373176	rs114766194	G	A	2173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=1.804;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:54,57:0.51:111
chr12	48373181	rs12368284	A	G	2176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=2.128;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:58,57:0.50:115
chr12	48373452	rs73297165	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.38;ReadPosRankSum=0.903;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	48373718	rs11443755	A	AC	1065.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	48373939	rs58783688	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:158,141:0.47:299
chr12	48374011	rs57444859	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	48374028	rs56387272	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr12	48374328	rs41272027	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:165,141:0.46:306
chr12	48374513	rs1635554	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	48374616	rs12300271	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.109;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr12	48374731	rs1793940	C	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr12	48375437	rs41263865	C	CT	859.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr12	48375475	rs1793937	C	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr12	48375568	rs1635553	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	48375965	rs2276457	C	T	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.15;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	48375975	rs2276456	A	G	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	48376137	rs2276455	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr12	48376213	rs12811832	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr12	48376291	rs2276454	G	A	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr12	48376422	rs41263855	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	48376443	rs3842680	A	AC	998.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr12	48376447	rs3829737	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr12	48376503	rs3829736	C	T	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr12	48376530	rs11168337	C	A	9209.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr12	48377970	rs1635550	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	48379810	rs3829734	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr12	48379961	rs1635547	A	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=0.567;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr12	48379964	rs1635546	A	G	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.85;ReadPosRankSum=0.163;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr12	48380031	rs1635544	A	G	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	48380682	rs10875714	G	A	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:140,168:0.55:308
chr12	48383235	rs1635537	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	48386553	rs1635534	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr12	48386577	rs1793915	G	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr12	48387052	rs1793912	A	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.52;ReadPosRankSum=-0.628;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	48387057	rs1793911	G	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.70;ReadPosRankSum=0.676;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	48388102	rs55921916	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.614;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:35,41:0.54:76
chr12	48388150	rs116115813	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr12	48388995	rs3216168	TC	T	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr12	48389643	rs1034762	A	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:116,118:0.50:234
chr12	48390585	rs2213163	T	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	48391416	rs3737548	G	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,116:0.56:206
chr12	48398002	rs3803184	G	C	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.570;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:73,81:0.53:154
chr12	48398080	rs3803183	T	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	48413789	rs113940474	A	ATATTGT	2201.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:116,60:0.34:176
chr12	48413944	rs7299135	C	T	3465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.284;QD=16.20;ReadPosRankSum=1.005;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:117,97:0.45:214
chr12	48413950	rs28459711	A	C	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.239;QD=17.02;ReadPosRankSum=1.808;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:110,85:0.44:195
chr12	48413979	rs7299364	G	T	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.207;QD=7.89;ReadPosRankSum=-0.582;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:72,53:0.42:125
chr12	48414009	.	C	CTTTTTT	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=-0.000;DP=70;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.000;QD=17.88;ReadPosRankSum=0.192;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	48414058	rs7299271	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	48418809	rs75265168	A	G	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:79,90:0.53:169
chr12	48441748	rs12297820	G	A	3381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=0.359;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:261,185:0.41:446
chr12	48441920	rs113645512	G	GT	1236.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr12	48468588	rs59901073	C	CAA	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.053;QD=7.24;ReadPosRankSum=0.818;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr12	48468602	rs60536184	A	G	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=-1.248;QD=16.27;ReadPosRankSum=-0.134;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr12	48468652	rs4258439	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	48479002	rs61750873	G	A	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:124,125:0.50:249
chr12	48490243	rs63235460	AT	A	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.701;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr12	48495241	rs142781911	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:49,16:0.25:65
chr12	48502100	rs725454	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	48512285	rs4760682	C	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	48512521	rs11168415	A	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	48524092	rs75650121	G	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,71:0.52:137
chr12	48524308	rs74089112	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	48525861	rs10875747	A	G	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.564;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:111,80:0.42:191
chr12	48527059	rs2269933	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	48527974	rs56009798	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr12	48528567	rs138022863	A	T	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.475;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:95,79:0.45:174
chr12	48534814	rs34700912	A	AG	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	48536406	rs74089122	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	48537624	rs4075913	A	G	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	48544834	rs74089135	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.848;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	48545553	rs10783230	G	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	48547117	rs61558457	G	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	48578325	rs10783231	A	C	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	48578631	rs7486941	G	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr12	48596241	rs11168459	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	48737570	rs11168534	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	48738555	rs34591795	GA	G	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	48741219	rs901962	A	T	73.85	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	48880636	rs113786359	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.24;ReadPosRankSum=-0.628;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	48882966	rs73298787	T	C	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	48888743	rs74090301	GA	AT	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	48919556	rs2731073	A	G	5881.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	48919659	rs4075258	T	C	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr12	48919796	rs12425460	C	T	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr12	48920006	rs12425518	G	A	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	48921533	rs7299323	C	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	48954040	rs1807757	A	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	48962869	rs2232566	A	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr12	49048809	.	G	C	2017.77	.	AC=1;AF=0.500;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	0/1:135,108:0.44:243
chr12	49073358	rs3741630	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.723;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr12	49075811	rs2277365	T	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:150,106:0.41:256
chr12	49076036	rs10783277	T	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	49091972	rs11420004	G	GA	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=1.103;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	49095046	.	T	TCAC	98	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=3;MGOF=10;MMLQ=27;MQ=47.14;NF=1;NR=3;PP=98;QD=35.25;SC=TCTCCCTCTGTCACCCAGGCT;SbPval=0.58;Source=Platypus;TC=5;TCF=1;TCR=4;TR=4;WE=49095054;WS=49095036;set=Platypus	GT:AD:AF:DP	1/0:1,4:0.80:5
chr12	49108488	rs7138930	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	49153198	rs114007987	TT	GC	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr12	49218171	rs2070615	A	G	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	49218810	rs11379348	G	GT	1850.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr12	49219569	rs2453469	A	G	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	49259194	rs2453489	T	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	49298340	rs3825184	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	49334044	rs708242	G	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	49334762	rs12122	G	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	49362779	rs833834	T	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	49390677	rs10783299	T	C	7529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.264;SOR=0.553;set=HC	GT:AD:AF:DP	1/1:3,291:0.99:294
chr12	49396869	rs150641493	C	G	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:205,162:0.44:367
chr12	49397291	rs67579566	GC	G	4741.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:3,176:0.98:179
chr12	49398862	rs2293445	G	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,78:0.51:154
chr12	49407026	rs111248062	C	CT	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	49412370	rs77879432	G	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:151,117:0.44:268
chr12	49412462	rs114080667	G	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,74:0.48:155
chr12	49422826	rs74830946	A	G	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	49422857	rs75340924	C	T	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	49427652	rs3782357	C	T	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	49433496	rs145186737	T	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:118,122:0.51:240
chr12	49434074	rs10747559	C	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	49435814	rs78966570	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:135,89:0.40:224
chr12	49438347	rs12304391	T	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	49439659	rs833818	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	49442356	rs5798089	C	CA	2991.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	49442561	rs55776244	CAG	C	2563.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr12	49444545	rs2241726	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	49446040	rs1064210	C	T	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	49460882	.	CTT	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.266;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr12	49463352	rs71080168	CT	C	11829.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.131;QD=44.47;ReadPosRankSum=-1.296;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:1,265:1.00:266
chr12	49463353	.	TC	CT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=27;MQ=60.03;NF=87;NR=56;PP=2947;QD=20;SC=CACCACCAACTCTTCCAATCC;SbPval=0.51;Source=Platypus;TC=158;TCF=97;TCR=61;TR=143;WE=49463381;WS=49463343;set=Platypus	GT:AD:AF:DP	1/1:15,143:0.91:158
chr12	49463356	.	TCCAATCCTCCACTCTTCC	TTCCTCCACTCTTCC,T	12023.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=274;set=Intersection	GT:AF:DP	1/1:1.00:273
chr12	49463361	rs200055056	TCCTCCACTCTTCC	T	11994.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.140;QD=43.78;ReadPosRankSum=-1.619;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:1,273:1.00:274
chr12	49487927	rs11168855	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr12	49494862	rs35472356	C	CA	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	49495854	rs12320695	C	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:93,70:0.43:163
chr12	49496242	rs11168858	G	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:151,87:0.37:238
chr12	49498130	rs10783302	G	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	49498198	rs12314634	C	T	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.237;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:103,92:0.47:195
chr12	49498751	rs2279596	G	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	49500509	rs10747561	C	T	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	49500960	rs78798784	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	49521672	rs2753	G	A	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	49521849	rs141499311	G	A	4574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=52.07;MQRankSum=-2.140;QD=10.69;ReadPosRankSum=-0.587;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:204,224:0.52:428
chr12	49522578	rs1057725	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	49522605	rs1057548	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr12	49522785	rs201677952	TC	T	467.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.081;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr12	49522786	rs1865157	C	A	591.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.081;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr12	49522789	rs111246616	C	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.035;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr12	49523566	rs12301841	A	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.241;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	49524988	rs12318907	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,72:0.45:159
chr12	49525008	rs2241727	G	C	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:72,93:0.56:165
chr12	49579696	rs697624	C	G	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	49580180	rs1056875	T	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	49667103	rs9668136	A	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	49689597	rs7488343	G	C	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	49690337	rs2070760	T	C	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	49691250	rs73112143	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr12	49691567	rs2236746	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	49717533	rs8285	A	C	5871.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:210,283:0.57:493
chr12	49719149	rs111795391	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.883;QD=4.87;ReadPosRankSum=1.533;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	49721122	rs73309977	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	49722646	rs35700294	C	CA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.761;QD=0.99;ReadPosRankSum=2.354;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:127,31:0.20:158
chr12	49722793	rs2230550	C	T	4680.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:219,231:0.51:450
chr12	49723581	rs11835303	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr12	49723963	rs4243545	A	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr12	49724955	rs3088008	A	C	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:167,207:0.55:374
chr12	49725417	rs186093263	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:121,114:0.49:235
chr12	49726717	rs56911877	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	49742649	rs76011041	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	49878411	rs61733031	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,67:0.40:166
chr12	49883371	rs2272478	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	49893815	rs11447993	C	CT	642.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.476;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:12,43:0.78:55
chr12	49916459	rs12309053	A	T	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.515;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr12	49916672	rs17123724	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr12	49934565	rs7132792	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	49937392	rs74089562	T	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	49937813	rs1150057	A	G	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:279,152:0.35:431
chr12	49937912	rs1150058	G	A	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:143,216:0.60:359
chr12	49943381	.	C	G	6778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DP=856;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.146;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:484,356:0.42:840
chr12	49948105	rs3815832	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	49948205	rs12316175	C	T	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:169,197:0.54:366
chr12	49950584	rs12300376	T	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr12	49951232	rs2241418	T	C	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:127,146:0.53:273
chr12	49952394	rs13906	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	49956971	rs61331732	CCT	C	4075.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:126,113:0.47:239
chr12	49957103	rs57965817	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	49957176	rs17123787	T	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	49959154	rs79170966	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	49960551	rs13066	C	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:133,109:0.45:242
chr12	49993172	rs80350134	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	49994142	rs76092719	C	T	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:157,111:0.41:268
chr12	49997210	rs140851256	AG	A	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	50026049	rs114756911	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr12	50026779	rs376648517	GC	G	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=1.064;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr12	50036532	rs79992759	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr12	50038292	rs4073998	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	50039479	rs77151210	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	50040380	rs76862171	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.378;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	50040811	rs3841320	A	AG	7105.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	50043884	rs61512987	C	T	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	50044960	rs115297935	C	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,84:0.49:172
chr12	50047810	rs77006204	G	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr12	50048542	rs76173165	G	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	50062182	rs75378222	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	50100991	rs150630078	G	GC	1237.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr12	50146765	rs17123924	A	G	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=1.350;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:137,183:0.57:320
chr12	50146950	rs1012874	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	50149347	rs17123927	A	G	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr12	50152193	rs4563	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:225,213:0.49:438
chr12	50152601	rs113363190	C	CTTT	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=-0.000;DB;DP=78;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.99;ReadPosRankSum=1.291;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	50155400	rs6580721	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr12	50155434	rs17123943	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.375;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr12	50155748	rs147740071	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	50174299	rs61402274	A	C	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.412;QD=8.48;ReadPosRankSum=-1.996;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:154,130:0.46:284
chr12	50174307	rs111500583	CA	C	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.007;QD=1.65;ReadPosRankSum=-0.144;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:219,91:0.29:310
chr12	50187249	rs115725769	T	C	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:124,129:0.51:253
chr12	50188391	rs12314502	C	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=0.606;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr12	50188394	.	CCA	C	45.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.150;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr12	50188395	rs60633549	CA	C	774.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr12	50188434	rs2603105	T	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr12	50189807	rs2720298	C	A	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	50189834	rs2603104	T	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:4,115:0.97:119
chr12	50192009	rs1075366	T	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	50197880	rs7953534	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr12	50271372	rs1248263	G	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	50271617	rs73293433	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	50283115	rs80295142	C	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	50283465	rs643971	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr12	50290728	rs297935	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	50291735	rs297937	G	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr12	50294923	rs297912	A	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	50304588	rs487165	A	T	7324.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	50304949	rs450798	G	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	50305007	rs394119	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	50344958	rs60629501	C	T	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:102,94:0.48:196
chr12	50349411	rs457487	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	50356174	rs71889938	TG	T	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.30;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	50358073	rs296753	C	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	50367712	.	G	A	5385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DP=685;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.770;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:386,287:0.43:673
chr12	50384469	rs56699050	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	50391055	rs10560086	CTT	C	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=1.301;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr12	50396001	rs11169245	T	A	1125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.617;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=1.831;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr12	50410521	rs7965151	T	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	50412286	.	A	G	2929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.654;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:112,165:0.60:277
chr12	50452708	rs653576	C	G	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	50471242	rs74362039	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	50471630	rs2272391	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr12	50473660	rs404751	A	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	50473755	rs2307080	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:121,104:0.46:225
chr12	50473893	rs12313064	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr12	50482211	rs646782	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	50488428	rs199738330	T	TAA	697.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr12	50498139	rs836178	T	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	50500994	rs76583391	A	G	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:84,93:0.53:177
chr12	50503159	rs2232209	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr12	50513687	rs7961065	C	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	50517454	rs113279297	CT	C,CTT	603.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.344;QD=12.32;ReadPosRankSum=-0.590;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:2,31,16:0.63,0.33:49
chr12	50529314	rs11169281	C	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:98,82:0.46:180
chr12	50529736	rs3741562	G	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,97:0.45:216
chr12	50529936	rs7136570	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	50532461	rs12302335	C	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=2.073;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr12	50535722	.	C	CAA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.402;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	50537060	rs2277355	C	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:128,119:0.48:247
chr12	50537815	rs7302981	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	50599709	rs2302900	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr12	50599984	rs1362984	T	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	50616346	rs3812825	A	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr12	50627942	rs113699072	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-1.076;QD=9.40;ReadPosRankSum=1.039;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	50627994	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.748;QD=3.16;ReadPosRankSum=-0.528;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	50727706	rs6580741	G	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:129,82:0.39:211
chr12	50744094	rs7296277	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	50744119	rs7296291	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr12	50744171	rs7312252	T	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr12	50744753	rs10506292	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr12	50745415	rs75533952	G	C	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,92:0.57:160
chr12	50746348	rs7304951	A	G	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	50746917	rs10876023	A	G	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:100,155:0.61:255
chr12	50747005	rs10876024	T	C	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.445;QD=11.24;ReadPosRankSum=-1.194;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:93,127:0.58:220
chr12	50747880	rs115075008	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,125:0.57:219
chr12	50749221	rs4435082	G	C	4441.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.11;ReadPosRankSum=-0.366;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:2,156:0.99:158
chr12	50749227	rs4625558	T	G	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	50749294	rs4421818	A	G	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr12	50750040	rs7964439	C	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	50754563	rs12303082	T	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,50:0.42:120
chr12	50796423	rs7138887	C	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	50821776	rs148662102	C	CT	177.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.650;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:3,12:0.80:15
chr12	50824427	rs200031096	GATT	G	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=0.165;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr12	50856259	rs5798139	C	CA,CAA	2295.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.730;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.606;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:42,78,68:0.41,0.36:188
chr12	50898784	.	T	TGGCGGC	1554.73	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr12	51019633	rs34609458	TC	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.183;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr12	51034721	rs2731436	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	51053866	rs17124832	C	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=-0.223;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	51072591	rs58366731	C	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.468;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:175,85:0.33:260
chr12	51076844	rs2731447	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	51089572	rs2684890	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	51089616	rs2684891	T	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	51092019	rs17124913	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.963;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	51093053	rs17124915	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr12	51112661	.	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:97,75:0.44:172
chr12	51128141	rs58301497	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr12	51135167	rs1975351	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	51135275	rs1866422	T	C	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	51182109	rs60010120	G	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	51182122	rs10747592	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr12	51203226	rs4986837	GT	G	290.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	51203371	rs1129406	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr12	51207704	rs829112	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=0.723;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	51319346	rs2359005	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	51348004	.	G	C	447.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr12	51386513	.	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.761;QD=1.87;ReadPosRankSum=1.044;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr12	51422096	rs144844219	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	51457854	rs11542510	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	51458502	rs11832566	A	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	51461425	rs4768956	C	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	51518401	rs78208051	G	A	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr12	51585335	rs10783419	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr12	51585599	rs10735831	T	G	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.78;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	51585599	.	TGC	GGC,GGT	510	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=24,11;NR=40,22;PP=373,510;QD=6.37142519605;SC=GAACCATCCCTGCTTATCTGG;SbPval=0.54;Source=Platypus;TC=64;TCF=24;TCR=40;TR=64,33;WE=51585609;WS=51585589;set=Platypus	GT:AF:DP	0/1:1.00:64
chr12	51585601	rs10747606	C	T	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=0.821;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:51,49:0.49:100
chr12	51636259	rs1049467	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	51691127	rs3782468	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr12	51695947	rs111770314	A	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr12	51707801	rs138541026	CTTAT	C	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	51752085	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=8.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.118;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr12	51773152	rs75650116	C	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	51846090	rs1995691	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	51851126	rs4512904	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.155;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr12	51852511	rs6580835	C	T	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr12	51855984	rs2271149	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	51863643	rs4491281	T	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	51864979	rs2292217	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:97,85:0.47:182
chr12	51869098	rs868884	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	51879826	rs10783445	G	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	51888998	rs2102376	G	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	51890721	rs10783448	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	51898014	rs3896351	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr12	51898108	rs3858636	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=-0.136;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr12	51901056	rs7305515	G	A	94.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	51901390	rs7305599	A	G	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	52080965	rs4761829	C	T	5393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.634;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:162,260:0.62:422
chr12	52096440	rs146979237	GGTTATTTATTATCTCCAAGGTCATGGAGTAAATAGAATTAT	G	875.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=2.913;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr12	52156255	rs303767	A	C	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=3.249;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:90,98:0.52:188
chr12	52159438	rs56879517	G	GT	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.942;QD=8.75;ReadPosRankSum=0.643;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr12	52173781	rs76315468	G	GTTC	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	52200028	rs303828	C	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	52204246	rs172559	T	C	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:91,147:0.62:238
chr12	52215102	rs303819	T	G	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:176,216:0.55:392
chr12	52215205	rs116545797	C	T	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:102,111:0.52:213
chr12	52281920	rs697633	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr12	52282060	rs697634	C	T	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.850;QD=7.43;ReadPosRankSum=0.172;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:260,190:0.42:450
chr12	52282748	rs697635	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,32:0.32:101
chr12	52282873	rs697636	A	T	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:145,123:0.46:268
chr12	52283302	rs4762026	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr12	52284233	rs706832	T	C	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr12	52284274	rs7303111	G	A	4275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-2.113;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:362,240:0.40:602
chr12	52284483	rs7303030	A	G	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:273,246:0.47:519
chr12	52284668	rs12368048	C	A	5382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=0.395;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:398,284:0.42:682
chr12	52307145	rs2071218	C	T	14608.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr12	52307308	rs2071219	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	52308344	rs1058563	G	A	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:166,197:0.54:363
chr12	52308500	.	TTTTAA	T	338	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=6;HapScore=2;MGOF=3;MMLQ=26;MQ=60.0;NF=0;NR=6;PP=338;QD=57.8333333333;SC=CAACCTCTTTTTTTAATTTAA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=6;WE=52308512;WS=52308490;set=Platypus	GT:AD:AF:DP	1/1:7,6:0.46:13
chr12	52312944	rs706815	T	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr12	52312964	rs706816	A	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr12	52345497	rs10540557	TGCG	T	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=36.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	52404618	rs1298913	T	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	52408422	rs1283166	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	52448188	rs1882118	C	G	7804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=2.872;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:612,436:0.42:1048
chr12	52448700	rs61734309	C	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:194,222:0.53:416
chr12	52450831	rs1873989	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr12	52452825	rs45491997	T	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr12	52565322	rs3741737	G	T	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:119,141:0.54:260
chr12	52566882	rs140062194	G	C	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:57,95:0.62:152
chr12	52567646	rs56809568	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr12	52574780	rs4762060	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	52600033	rs10747632	T	C	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	52602013	rs1902767	C	T	9390.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	52627007	rs7308751	C	T	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.350;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:90,63:0.41:153
chr12	52627215	rs7308888	A	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	52631225	rs112216295	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr12	52631313	rs6580870	A	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	52631394	rs10637094	C	CAT	9720.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=44.59;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	52631510	.	A	ATG	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-0.000;QD=30.07;ReadPosRankSum=0.755;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	52632573	rs7300317	A	G	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:187,211:0.53:398
chr12	52635241	rs2078201	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr12	52635346	rs116303953	G	A	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:187,190:0.50:377
chr12	52635443	rs2243588	T	C	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	52636835	.	G	A	952.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:119,59:0.33:178
chr12	52639302	rs2608009	G	C	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	52641778	rs112386677	A	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=2.421;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	52646148	rs113480372	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=0.225;QD=5.88;ReadPosRankSum=0.417;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:73,41:0.36:114
chr12	52648297	rs9325150	T	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	52649887	rs2168762	T	C	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:131,156:0.54:287
chr12	52649954	rs2242139	T	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,87:0.63:138
chr12	52660904	rs2857686	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr12	52661192	rs1870222	A	G	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:127,115:0.48:242
chr12	52661209	rs1870223	T	C	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	52661302	rs1870224	C	A	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	52679937	rs3660	C	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	52680008	rs3657	T	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.185;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr12	52680172	rs74095618	G	A	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:128,194:0.60:322
chr12	52681416	rs7300801	T	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:150,38:0.20:188
chr12	52681437	rs3187034	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:187,45:0.19:232
chr12	52681533	rs7300941	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:199,136:0.41:335
chr12	52681714	rs6580872	T	C	6139.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	52681733	rs7954186	A	C	7178.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;MQ=59.35;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	52681925	rs6580873	A	C	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	52681968	rs6580874	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=32.22;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	52682375	rs111858567	C	T	3230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.050;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:123,155:0.56:278
chr12	52699548	rs2032360	T	C	7944.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	52700100	rs11612715	C	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr12	52708420	rs2857671	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	52708565	rs2857670	A	G	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	52708730	rs113407094	A	AGGTGT	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	52708978	rs3825221	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	52709032	rs3741721	T	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	52709880	rs2852468	A	G	2193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-3.698;QD=19.08;ReadPosRankSum=-0.263;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:57,58:0.50:115
chr12	52709883	rs2248473	T	C	2193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-3.657;QD=19.24;ReadPosRankSum=1.339;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:56,58:0.51:114
chr12	52709981	rs2270266	C	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	52710246	rs2270267	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:57,69:0.55:126
chr12	52710309	rs2257286	G	A	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:143,147:0.51:290
chr12	52710715	rs2857669	G	A	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:113,184:0.62:297
chr12	52710897	rs2852463	TG	CA	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr12	52710913	rs2852462	A	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr12	52711450	rs2248619	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	52711549	rs2857667	G	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.065;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr12	52711624	rs2857666	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr12	52711776	rs2852459	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr12	52712975	rs3741715	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	52713199	rs11290512	CA	C	1193.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr12	52755097	rs1791627	A	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	52757181	rs371939591	A	G	5407.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:210,268:0.56:478
chr12	52773702	rs1791611	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:81,62:0.43:143
chr12	52773774	rs1791661	T	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr12	52774158	rs951772	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr12	52774235	rs951773	A	G	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr12	52774305	rs1732293	A	G	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:235,152:0.39:387
chr12	52774370	rs1791657	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:100,77:0.44:177
chr12	52774993	rs883712	C	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:80,38:0.32:118
chr12	52775034	rs1791652	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr12	52775062	rs883709	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr12	52775395	rs883710	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr12	52776679	rs1732297	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	52776895	rs1732298	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.431;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:60,48:0.44:108
chr12	52776942	rs1732299	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr12	52777036	rs1732300	G	A	142.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	52777439	rs1614888	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr12	52777502	rs1945297	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr12	52777513	rs2245203	T	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr12	52777578	rs1613931	C	T	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.543;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:73,29:0.28:102
chr12	52777580	rs1613929	A	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.702;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr12	52777606	rs1613859	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.290;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr12	52778772	rs1732303	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	52778947	rs1791631	A	G	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:112,90:0.45:202
chr12	52779391	rs1732305	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr12	52788928	rs2658658	G	A	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:122,161:0.57:283
chr12	52789509	rs1732264	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	52789597	rs1732265	A	G	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	52789605	rs1732266	T	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	52789691	rs34479712	A	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	52789693	rs11304728	GT	G	4431.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	52790899	rs1791635	T	C	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	52790940	rs2249384	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr12	52818504	rs298104	T	G	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:273,147:0.35:420
chr12	52818646	rs73306546	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,55:0.40:138
chr12	52822258	rs401926	A	G	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:282,201:0.42:483
chr12	52822559	rs2232401	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	52824562	rs443084	T	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr12	52825363	rs1798640	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr12	52827534	rs67876	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr12	52827818	rs298109	T	C	4558.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:286,239:0.46:525
chr12	52828306	rs2232380	G	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	52841765	rs388626	G	A	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:230,164:0.42:394
chr12	52842736	rs437014	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:120,40:0.25:160
chr12	52843104	rs58446634	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr12	52844265	rs652423	T	C	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:274,195:0.42:469
chr12	52845801	rs428894	T	C	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-1.669;QD=9.43;ReadPosRankSum=2.878;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr12	52862770	rs1053796	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr12	52863091	rs35481773	G	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:149,118:0.44:267
chr12	52863160	rs34838670	G	A	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:149,134:0.47:283
chr12	52863564	rs3894847	C	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:252,151:0.37:403
chr12	52863621	rs382367	T	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:198,140:0.41:338
chr12	52864775	rs3847831	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	52865443	rs7487256	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:87,51:0.37:138
chr12	52865687	rs391567	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr12	52865924	rs77218649	G	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:195,148:0.43:343
chr12	52866145	rs4761899	T	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.390;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	52867625	rs4761901	G	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr12	52881363	rs1063931	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=1.180;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	52881376	rs1053857	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.65;ReadPosRankSum=1.691;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	52881380	rs1053854	A	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=2.210;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr12	52881428	rs28667515	A	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	52882410	rs144849815	T	TGAA	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	52883579	rs17103964	G	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	52883714	rs56654203	T	C	5295.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:311,272:0.47:583
chr12	52884283	rs298119	A	G	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:134,92:0.41:226
chr12	52884557	rs298120	T	C	5743.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:407,296:0.42:703
chr12	52884843	rs646000	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr12	52885494	rs7298145	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,69:0.45:153
chr12	52908872	rs11549949	C	T	5387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.213;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:376,277:0.42:653
chr12	52908917	rs11549950	T	C	7221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.055;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:468,380:0.45:848
chr12	52909061	rs28694819	T	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:137,126:0.48:263
chr12	52910687	rs1799849	G	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr12	52910712	rs1799848	A	G	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr12	52910851	rs60815939	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr12	52911401	rs4761924	T	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr12	52912353	rs7315406	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:87,56:0.39:143
chr12	52912768	rs1132948	C	T	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:453,302:0.40:755
chr12	52912869	rs147498164	CA	TG	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;JOINED;set=Intersection	GT:AD:AF:DP	0/1:121,83:0.41:204
chr12	52912959	rs60314569	G	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr12	52913029	rs607860	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	52939225	rs60971309	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-2.238;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	52940020	rs114534525	G	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:91,45:0.33:136
chr12	52942362	rs622446	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr12	52942998	rs635206	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	52944023	rs199845547	C	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.787;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr12	52946498	rs665470	C	T	4399.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:155,216:0.58:371
chr12	52946543	rs665522	C	T	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:190,218:0.53:408
chr12	52946890	rs628819	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	52961318	rs74095143	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	52964706	rs56182525	A	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:57,93:0.62:150
chr12	52964718	rs597048	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,48:0.41:117
chr12	52964934	rs669865	T	G	159.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	52964978	rs73107567	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.71;ReadPosRankSum=1.465;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	52964981	rs73107568	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.60;ReadPosRankSum=1.969;SOR=2.266;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	52965173	rs670741	T	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	52965722	rs673363	T	C	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	52965761	rs673449	C	T	7338.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	52965782	rs673476	T	C	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	52966137	rs685720	T	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	52966144	rs34211466	TC	T	703.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr12	52966390	rs11170176	A	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr12	52967436	rs11836189	G	A	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:180,280:0.61:460
chr12	52981643	rs113410377	G	A	5202.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:245,260:0.51:505
chr12	52986132	rs617820	T	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	52992919	rs7308017	G	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,44:0.39:114
chr12	52994896	rs56207115	A	G	2517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.448;QD=9.16;ReadPosRankSum=-1.878;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:141,134:0.49:275
chr12	52995020	rs57242225	C	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr12	53002956	rs591636	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	53003082	rs3847848	C	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-1.623;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:66,40:0.38:106
chr12	53004437	rs60833636	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:104,74:0.42:178
chr12	53008372	rs653493	C	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.902;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:72,45:0.38:117
chr12	53008532	rs649043	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=1.573;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	53009041	rs666760	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr12	53010024	rs61736101	C	T	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:124,156:0.56:280
chr12	53045626	rs2634041	T	C	7044.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:250,344:0.58:594
chr12	53070121	rs698170	T	G	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:148,197:0.57:345
chr12	53071338	rs626480	A	G	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr12	53084872	rs643027	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr12	53085089	rs636127	T	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,71:0.55:130
chr12	53085262	rs2684339	C	A	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:115,114:0.50:229
chr12	53086626	rs828109	G	A	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:253,246:0.49:499
chr12	53089460	rs5798218	GACCC	G	745.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.07;ReadPosRankSum=1.282;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr12	53090068	rs588706	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	53096894	rs78374723	C	T	5042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-2.415;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:365,263:0.42:628
chr12	53096913	rs1625862	G	A	17815.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr12	53096949	rs74093790	T	C	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:281,192:0.41:473
chr12	53097191	rs17118224	C	T	4263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.219;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:251,212:0.46:463
chr12	53162638	rs2280479	G	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:198,215:0.52:413
chr12	53162773	rs1464423	A	G	5074.73	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:313,261:0.45:574
chr12	53162991	rs73310886	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	53163467	rs10876340	A	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr12	53165862	rs12296490	C	T	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:212,163:0.43:375
chr12	53166603	rs61730600	T	C	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=1.615;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:53,68:0.56:121
chr12	53167313	rs7399317	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	53167615	rs56913347	CT	C	122.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.993;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr12	53183951	.	C	CGCTGCCACCGCTGAAACCGCT	1364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=4.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=-0.277;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr12	53184491	rs11170279	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,91:0.98:93
chr12	53184725	rs12312467	G	A	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:57,91:0.61:148
chr12	53186122	rs4432093	G	A	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	53186406	rs139378264	T	C	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr12	53187150	rs4919750	C	T	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr12	53189232	rs138693059	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr12	53189696	rs28721426	C	G	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	53204524	rs17119420	A	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=1.348;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr12	53204614	rs2307027	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-1.055;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:79,37:0.32:116
chr12	53204757	rs10783539	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	53205757	rs7959052	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	53207583	rs11267392	C	CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG	15702.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.221;QD=70.42;ReadPosRankSum=-1.522;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr12	53207628	rs2638525	G	A	5582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.970;QD=8.34;ReadPosRankSum=-0.592;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:385,284:0.42:669
chr12	53215779	rs74096642	C	T	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr12	53216184	rs4415849	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	53223661	rs7970710	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	53225165	rs74094212	G	A	4303.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:124,200:0.62:324
chr12	53227803	rs2638497	A	G	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:220,157:0.42:377
chr12	53233688	rs61764060	G	A	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:156,174:0.53:330
chr12	53238224	rs55825786	A	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	53238314	rs111852003	G	A	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:191,211:0.52:402
chr12	53240025	rs10876360	C	T	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr12	53240101	rs10876361	C	T	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	53240126	rs10876362	T	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	53240584	rs2682342	A	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr12	53242641	rs11170289	C	T	3833.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:116,182:0.61:298
chr12	53294381	rs8608	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	53294821	rs4351899	T	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	53295917	rs2035875	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	53298769	rs1065306	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr12	53298835	rs2070910	T	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	53343257	.	C	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=11.539;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-9.280;QD=3.25;ReadPosRankSum=1.840;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr12	53343265	.	C	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=11.607;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-9.170;QD=3.39;ReadPosRankSum=1.779;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr12	53343266	.	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=11.607;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-9.170;QD=3.39;ReadPosRankSum=1.628;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr12	53343273	rs11551638	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=11.782;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-9.280;QD=3.33;ReadPosRankSum=1.762;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr12	53343461	rs17120866	A	AC	3908.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:170,147:0.46:317
chr12	53343493	rs1492241	G	A	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:109,127:0.54:236
chr12	53344303	rs60775386	T	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr12	53346152	rs17120921	G	A	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:139,122:0.47:261
chr12	53400440	rs61927957	T	G	2477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=4.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.685;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:77,117:0.60:194
chr12	53416119	rs7975725	T	C	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=1.222;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:86,80:0.48:166
chr12	53416251	rs10506315	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	53421746	rs59856997	CT	C	1455.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:57,94:0.62:151
chr12	53432088	rs7968918	T	C	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr12	53433089	rs1548204	C	A	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	53433486	rs8916	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr12	53433709	rs1356993	C	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	53433788	rs1356994	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr12	53448320	rs11170386	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,58:0.57:102
chr12	53449321	rs7315980	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr12	53451952	rs2280446	C	T	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:95,132:0.58:227
chr12	53452263	rs66607805	CCAGGTGGCAGG	C	10892.73	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	53453433	rs11558984	G	A	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:76,122:0.62:198
chr12	53454176	rs73099914	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr12	53455579	rs112990937	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:190,127:0.40:317
chr12	53457704	rs34922637	C	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,48:0.41:117
chr12	53459881	rs10876402	T	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.13;ReadPosRankSum=-0.943;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	53461345	rs111539975	G	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	53467060	rs112907146	C	T	6893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-1.318;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:395,353:0.47:748
chr12	53468419	rs2277329	T	G	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr12	53470777	rs7977070	G	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	53471929	rs7302636	T	C	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	53494388	rs17123172	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	53496012	rs111288732	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,40:0.38:104
chr12	53497288	rs2280698	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr12	53497402	rs9658625	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr12	53497801	rs2280700	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr12	53497927	rs17123210	C	G	5126.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:393,281:0.42:674
chr12	53499083	rs17123218	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.81;ReadPosRankSum=-0.232;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	53499487	rs2272302	C	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr12	53499505	rs2272303	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr12	53499534	rs11170413	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=1.881;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr12	53499574	rs2272304	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.239;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=25.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.579;SOR=3.715;set=HC	GT:AD:AF:DP	0/1:107,18:0.14:125
chr12	53499585	rs3093946	A	AAGTTCTGGATCGCTAGGCCCCATGCCTCATGTGTACATGAGGTGAGCT	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.670;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=25.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-2.856;SOR=4.496;set=HC	GT:AD:AF:DP	0/1:139,11:0.07:150
chr12	53509339	rs3219199	GC	TT	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;JOINED;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr12	53509693	rs3817536	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	53509933	rs2272296	C	T	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:159,130:0.45:289
chr12	53512099	rs822681	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.579;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:117,84:0.42:201
chr12	53513148	rs822683	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	53515032	rs2272297	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:93,91:0.49:184
chr12	53517139	rs55907967	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	53552199	rs113238124	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	53552475	rs12161793	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr12	53553829	rs7969735	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	53554126	rs7956919	T	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr12	53554362	rs145358336	T	TTC	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr12	53554383	rs113980084	G	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	53563928	rs111553950	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,39:0.41:96
chr12	53564157	rs17124000	T	G	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.760;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:76,71:0.48:147
chr12	53567038	rs67334572	AG	A	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.517;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:31,28:0.47:59
chr12	53571688	rs113269292	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.435;QD=5.82;ReadPosRankSum=0.557;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr12	53571738	.	TA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=3.200;QD=1.89;ReadPosRankSum=-0.397;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr12	53572130	rs10876417	T	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr12	53573499	rs11401485	G	GT,GTT	1129.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.427;QD=16.14;ReadPosRankSum=1.923;SOR=0.670;set=HC	GT:AD:AF:DP	1/2:9,46,15:0.66,0.21:70
chr12	53574631	rs59218377	A	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	53580131	rs3814778	T	C	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	53581129	rs111968755	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr12	53585278	rs80201470	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	53585602	rs6580932	G	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:106,126:0.54:232
chr12	53586198	rs2230397	G	T	4811.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:202,238:0.54:440
chr12	53586822	rs2272299	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr12	53587468	rs2272300	T	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	53587736	rs145601608	AC	A	1108.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,41:0.56:73
chr12	53588180	rs884374	A	C	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr12	53606848	rs113825016	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	53609123	rs62638739	C	T	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:182,170:0.48:352
chr12	53662624	rs6580942	C	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	53666713	rs4759086	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	53671264	rs34424268	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr12	53676350	rs76801968	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr12	53677072	rs1609473	T	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	53677089	rs4454760	G	A	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	53679811	rs34100547	G	A	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:195,108:0.36:303
chr12	53679926	rs34130634	A	G	6162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.890;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:527,346:0.40:873
chr12	53679989	rs35428211	A	G	5139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.221;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:356,270:0.43:626
chr12	53680135	rs61741367	C	T	3652.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:184,177:0.49:361
chr12	53680505	rs35874650	C	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:151,100:0.40:251
chr12	53682457	rs56358776	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr12	53686703	rs1056685	G	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	53689190	rs1870240	C	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	53689331	rs111794761	C	T	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:179,137:0.43:316
chr12	53689525	rs112082696	G	A	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:181,131:0.42:312
chr12	53689881	rs79095106	A	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	53690188	rs59765323	CT	C	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	53691962	rs2694861	C	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.125;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr12	53692955	rs1020745	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr12	53693277	rs56249432	TG	T	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	53693532	rs1534284	AA	GC	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;JOINED;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr12	53700848	rs1534282	C	T	9459.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr12	53700860	rs711316	A	G	3033.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:173,151:0.47:324
chr12	53701357	rs112987708	A	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr12	53702371	rs4759287	T	C	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	53702805	rs369629444	C	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr12	53703021	rs1546808	G	A	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr12	53708011	rs7953255	G	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr12	53709708	rs7960963	G	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	53714290	rs4759232	T	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	53714496	rs4759231	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,88:0.61:145
chr12	53714509	rs7298879	T	G	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr12	53714993	rs4759020	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	53722098	rs7138938	A	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr12	53722128	rs7139272	G	A	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:104,159:0.60:263
chr12	53775742	rs3832826	CAA	C	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	53775974	rs35550715	C	G	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:189,150:0.44:339
chr12	53777171	rs3741651	A	G	9056.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:324,434:0.57:758
chr12	53818287	rs784893	A	G	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr12	53822919	rs144081755	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	53823175	rs373716383	CA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.836;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr12	53823307	rs784890	G	A	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	53862787	rs141484555	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-1.403;QD=4.38;ReadPosRankSum=-0.293;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	53877562	rs784565	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	53898178	rs74090784	C	G	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:57,87:0.60:144
chr12	53899299	rs74089603	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	53926423	rs111391259	GA	G	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,39:0.89:44
chr12	53931055	rs201999106	GTTGCCC	G	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.956;QD=13.16;ReadPosRankSum=-0.444;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	53931058	.	GCCC	G	1792	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=1;MGOF=69;MMLQ=27;MQ=59.86;NF=1;NR=3;PP=1792;QD=460.882418651;SC=TCTCCATGTTGCCCAGGCTGG;SbPval=0.86;Source=Platypus;TC=10;TCF=4;TCR=6;TR=4;WE=53931068;WS=53931048;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr12	54066271	rs10876480	C	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	54067544	rs2857000	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	54067603	.	CAA	C	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.493;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	54069802	.	C	CGA	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.708;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=0.281;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	54069803	.	AGC	GAA	415	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=59.06;NF=2;NR=2;PP=415;QD=119.616968716;SC=GCGCGTGCGCAGCGCACAGAG;SbPval=0.3;Source=Platypus;TC=11;TCF=8;TCR=3;TR=4;WE=54069813;WS=54069793;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	54069803	.	AGC	A	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.656;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=0.394;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	54070062	rs4020138	C	CTG	1418.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr12	54108228	rs2277368	G	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=1.398;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr12	54348596	.	CT	C	148	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=4;MGOF=11;MMLQ=28;MQ=60.0;NF=0;NR=1;PP=148;QD=174.0;SC=GTCCCCACCCCTCCCCCTGGC;SbPval=0.25;Source=Platypus;TC=8;TCF=6;TCR=2;TR=1;WE=54348618;WS=54348586;set=Platypus	GT:AD:AF:DP	1/0:7,1:0.12:8
chr12	54348610	.	C	T	139	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=4;MGOF=11;MMLQ=23;MQ=60.0;NF=5;NR=2;PP=139;QD=24.8244589353;SC=CCCTGGCGGCCGTGCCCACGT;SbPval=0.29;Source=Platypus;TC=13;TCF=11;TCR=2;TR=7;WE=54348618;WS=54348586;set=Platypus	GT:AD:AF:DP	1/0:6,7:0.54:13
chr12	54367061	rs4759315	T	G	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	54378981	.	GA	G	588.73	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,46:0.36:129
chr12	54449069	rs72272573	AAT	A	294.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.68;ReadPosRankSum=0.728;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr12	54496006	rs12308675	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	54496166	rs3195797	G	T	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	54496219	rs1133773	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	54575458	rs971	T	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	54575546	rs3136392	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	54577681	rs2233920	C	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr12	54635846	rs2293602	G	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	54651471	rs1140681	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr12	54677980	rs7967622	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	54687232	rs10506328	A	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	54734289	rs11170877	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr12	54734522	rs35078728	C	CT	192.92	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	54740379	rs4758958	T	G	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.487;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:118,94:0.44:212
chr12	54763931	.	G	GGGA	152	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=9;HapScore=2;MGOF=97;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=152;QD=54.6666666667;SC=TGGGGGGGGGGAAGGAGAGAT;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=3;WE=54763939;WS=54763921;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	54764618	rs2706248	T	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	54764699	rs77903203	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr12	54764962	rs2244933	G	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	54765005	rs3830651	TCTAA	T	1847.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	54767613	rs2706258	C	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	54767981	rs3832831	C	CAG	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	54772755	rs2706256	C	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	54778384	rs78646907	G	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.42;ReadPosRankSum=2.200;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	54794833	rs111752087	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	54795273	rs143692284	G	GGGTGGTTTAGAGGA	3310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.451;QD=14.15;ReadPosRankSum=3.632;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:158,76:0.32:234
chr12	54795410	rs73322228	A	G	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:255,194:0.43:449
chr12	54796998	rs17111853	A	G	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:245,194:0.44:439
chr12	54797328	rs76496996	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	54798011	rs112896207	C	T	2427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=3.139;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:78,118:0.60:196
chr12	54798048	rs113261097	G	A	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=0.992;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:89,50:0.36:139
chr12	54798693	rs111248181	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr12	54799450	rs1249378	A	G	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	54801525	rs12312926	A	G	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.342;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:124,108:0.47:232
chr12	54802030	rs112878226	T	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr12	54802450	rs113535846	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.050;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	54802580	rs2230393	G	A	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.943;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:140,67:0.32:207
chr12	54802638	rs12314853	A	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:274,125:0.31:399
chr12	54802670	rs12301470	C	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:259,113:0.30:372
chr12	54802767	rs12302891	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr12	54802872	rs7302345	G	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	54805753	rs1922254	G	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr12	54805765	rs1249181	C	T	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:92,79:0.46:171
chr12	54856087	rs145528050	TCCTG	T	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	54856358	rs12306947	T	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr12	54905815	rs2458409	C	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:90,67:0.43:157
chr12	54910234	.	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-1.642;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr12	54910837	rs1691630	G	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:114,99:0.46:213
chr12	54911768	rs1795838	C	T	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr12	54913213	.	A	ATTTT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=-0.000;QD=7.73;ReadPosRankSum=1.756;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	54914366	rs75711696	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.250;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	54914651	rs11170965	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,59:0.38:155
chr12	54920566	rs12369172	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	54920591	rs12367426	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	54925674	rs2271476	T	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr12	54925750	rs10747697	A	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	54925871	rs35753004	CT	C	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=0.261;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:10,40:0.80:50
chr12	54928781	rs112377731	T	TA	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	54929838	rs34084680	AG	A	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	54930914	rs2036067	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr12	54932788	rs4758966	T	C	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr12	54955647	rs1552957	G	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	54963907	rs1153138	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	54966879	rs114262843	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr12	54969241	rs76539153	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr12	54969998	rs1249949	A	G	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	54970454	rs1249950	T	C	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	54971347	rs1249951	C	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	54971415	rs79120491	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	54974090	rs77297788	A	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	54975837	rs1249958	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	54977037	rs57357679	AG	A	1271.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr12	55002014	rs1795819	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	55002053	rs1795818	C	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr12	55002065	rs1716356	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	55002409	rs11170988	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	55004150	rs937308	C	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,54:0.54:100
chr12	55028808	rs11832807	C	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	55038408	rs11338265	AT	A	190.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=1.033;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	55038799	rs115204038	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=-1.282;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	55039817	rs5798318	TG	T	1394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.869;QD=15.33;ReadPosRankSum=0.483;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:38,53:0.58:91
chr12	55041079	rs903768	T	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	55249002	rs7133564	A	G	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	55250612	rs1349910	A	G	21817.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,860:1.00:860
chr12	55252203	rs76751755	G	A	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.85;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	55354876	rs5798332	TA	T	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr12	55367178	rs3741673	C	T	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:130,130:0.50:260
chr12	55368245	rs4758993	G	A	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr12	55368368	rs4758994	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr12	55368441	rs4759131	T	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.084;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	55368521	rs12810984	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=-1.068;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	55421250	rs2656804	C	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	55421299	rs2243885	C	A	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	55523586	rs58036029	AT	A	2417.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:75,105:0.58:180
chr12	55523685	rs12303066	C	T	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:168,201:0.54:369
chr12	55523860	rs7305779	A	C	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:133,145:0.52:278
chr12	55524172	rs7306491	G	A	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:170,200:0.54:370
chr12	55524314	rs7137261	T	C	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr12	55524596	rs200072131	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	55641218	rs11171387	G	A	4811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.964;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:202,236:0.54:438
chr12	55641252	rs11171388	C	T	8068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.92;ReadPosRankSum=-0.998;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:188,217:0.54:405
chr12	55641263	rs11171389	C	T	7847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=-0.173;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:181,206:0.53:387
chr12	55642071	rs12318251	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=0.799;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	55688267	rs7308594	G	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:140,110:0.44:250
chr12	55714772	rs7132431	G	A	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:143,143:0.50:286
chr12	55714876	rs7132347	C	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:85,81:0.49:166
chr12	55715119	rs7132916	G	A	3794.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:204,194:0.49:398
chr12	55725882	rs11835321	T	C	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:148,190:0.56:338
chr12	55726450	rs7976828	A	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr12	55758832	rs7962135	T	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	55759851	rs7489047	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,37:0.37:101
chr12	55794264	rs7967395	A	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	55794378	rs79807163	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr12	55794976	rs7971073	A	G	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:180,140:0.44:320
chr12	55805647	rs12825123	A	G	5788.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:225,289:0.56:514
chr12	55806134	rs12833263	T	C	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:132,131:0.50:263
chr12	55806238	rs7300594	A	G	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:177,161:0.48:338
chr12	55806437	rs114890660	T	C	4328.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:168,200:0.54:368
chr12	55807293	rs3887805	A	G	2158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.612;MLEAC=2;MLEAF=1.000;MQ=49.00;MQRankSum=2.479;QD=25.40;ReadPosRankSum=0.429;SOR=2.331;set=HC	GT:AD:AF:DP	1/1:2,83:0.98:85
chr12	55807588	rs12826694	C	T	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:322,176:0.35:498
chr12	55808469	rs7132076	C	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	55820104	rs74092309	G	A	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:154,209:0.58:363
chr12	55820121	rs6581046	C	T	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr12	55820194	rs74092310	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr12	55820902	rs58396798	C	CT	1109.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr12	55820958	rs57387180	CA	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-1.850;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	55846890	rs74092333	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr12	55863224	rs60683621	C	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr12	55863381	rs10747756	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	55886294	rs7133698	G	A	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr12	55886489	rs7304753	T	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,68:0.37:184
chr12	55887087	rs12579181	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	55944926	rs7313959	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	55944999	rs11833187	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr12	55945119	rs7313899	A	G	16193.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.03;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,622:1.00:622
chr12	55945219	rs58154171	C	T	6556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.34;ReadPosRankSum=2.039;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:307,327:0.52:634
chr12	55945258	rs11835716	T	C	8469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.43;ReadPosRankSum=-0.256;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:209,227:0.52:436
chr12	55945265	rs74093226	A	G	8286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.41;ReadPosRankSum=-0.735;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:194,212:0.52:406
chr12	55945584	rs59693527	CTCTT	C	3365.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chr12	55945698	rs143772830	C	A	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:120,109:0.48:229
chr12	55945856	rs57386660	A	G	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:65,89:0.58:154
chr12	55968949	rs61746285	G	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:152,112:0.42:264
chr12	56076006	rs116592765	C	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr12	56079084	rs3852533	C	G	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:79,104:0.57:183
chr12	56080148	rs3782239	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr12	56080164	rs7306191	T	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	56082506	rs35887029	CA	C	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.172;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr12	56082522	.	G	C	501.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr12	56082785	rs3782240	C	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr12	56087144	rs56890747	CT	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.992;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.283;QD=3.33;ReadPosRankSum=-2.091;SOR=2.170;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr12	56088206	rs7953669	T	C	9712.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr12	56088349	rs11831381	C	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:160,96:0.38:256
chr12	56088773	rs2293410	C	T	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:118,163:0.58:281
chr12	56089357	rs1800974	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:86,100:0.54:186
chr12	56089554	rs2293411	T	C	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	56090038	rs7974721	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	56091617	rs2293412	A	G	19397.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr12	56091709	rs143895796	C	T	8588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.676;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:617,452:0.42:1069
chr12	56093817	rs11171660	T	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	56093903	rs139539572	A	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr12	56094894	rs149000088	G	C	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:198,201:0.50:399
chr12	56095046	.	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr12	56095367	rs11356595	CT	C	349.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-1.444;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:4,25:0.86:29
chr12	56096816	rs2293413	T	C	4474.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:201,226:0.53:427
chr12	56101421	rs142060614	A	C	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-1.674;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:130,106:0.45:236
chr12	56109786	rs4457792	G	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	56115785	rs3138140	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	56117652	rs3138135	G	A	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:221,300:0.58:521
chr12	56117700	rs13193	C	G	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:327,222:0.40:549
chr12	56120414	rs2231467	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	56120523	rs13020	G	A	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr12	56120768	rs772258	A	G	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:75,73:0.49:148
chr12	56197622	rs12322893	A	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	56220974	.	C	CA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=4.77;ReadPosRankSum=3.049;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:37,33:0.47:70
chr12	56236043	rs2291268	G	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=3.453;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr12	56236318	rs7310325	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	56236531	rs7294345	A	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	56295544	rs147424544	GAAGT	G	1111.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr12	56295734	rs7302270	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	56297584	rs150124044	TAA	T	1540.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr12	56298115	rs61956424	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=43.02;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	56298120	rs61956425	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=43.02;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	56307978	rs139054187	A	G	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:63,96:0.60:159
chr12	56326491	rs72436558	ACG	A	88.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=0.717;QD=2.02;ReadPosRankSum=1.875;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr12	56326493	rs57799285	GCA	G	264.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.631;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=0.969;QD=6.79;ReadPosRankSum=1.295;SOR=2.453;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr12	56326497	.	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=0.717;QD=2.22;ReadPosRankSum=1.493;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr12	56334258	rs73336393	G	T	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr12	56335107	rs1136082	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	56335883	rs11829961	G	A	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	56345408	rs11834873	T	G	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	56345746	rs112192346	G	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr12	56346368	rs113713801	T	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr12	56349836	rs11832131	C	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:90,59:0.40:149
chr12	56352186	rs58949113	AAAAG	A	842.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr12	56355618	.	ATT	A	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=2.100;QD=13.06;ReadPosRankSum=2.200;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr12	56359606	rs114123326	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr12	56360876	rs2069398	G	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:134,169:0.56:303
chr12	56363357	rs2069406	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr12	56386076	rs11550558	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	56411856	rs35961650	C	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	56415472	.	C	CTG	246.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.349;QD=15.42;ReadPosRankSum=1.184;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	56426577	rs1619653	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	56428344	rs2452822	G	C	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	56436111	rs7957187	C	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr12	56436472	rs705706	T	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	56437304	rs75125444	GC	TT	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr12	56437917	rs56696262	T	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr12	56473890	rs74094518	T	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.67;ReadPosRankSum=1.240;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	56477489	rs2271195	G	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,25:0.30:83
chr12	56477694	rs2271194	A	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,68:0.46:148
chr12	56478682	rs73338402	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr12	56482180	rs2292239	T	G	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	56482859	rs75375961	G	A	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:136,156:0.53:292
chr12	56482919	rs147491626	A	ATTC	1530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=3.200;QD=18.01;ReadPosRankSum=1.087;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:43,42:0.49:85
chr12	56492195	.	CAA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.143;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	56495162	rs75064496	A	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	56495306	rs812826	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.220;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr12	56498241	rs773121	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr12	56498307	rs77662319	C	G	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.420;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:88,120:0.58:208
chr12	56500502	rs34728522	T	TA	670.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.244;QD=13.15;ReadPosRankSum=1.463;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:8,43:0.84:51
chr12	56502926	rs773120	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=36.07;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	56510337	rs11404010	T	TG	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	56510637	rs1689512	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	56514940	rs74094539	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr12	56524448	rs141829655	T	TG	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr12	56531040	rs61733171	G	T	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,101:0.47:216
chr12	56531154	rs2271192	T	C	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr12	56531621	rs35807059	C	T	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.578;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:79,65:0.45:144
chr12	56535942	rs74568445	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	56549040	rs61598976	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr12	56551173	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.662;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr12	56551439	rs74092004	A	G	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:129,112:0.46:241
chr12	56557588	rs74092007	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=1.323;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr12	56563346	rs17852368	G	A	1824.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr12	56565340	rs12320265	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.230;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	56571954	rs12316272	G	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	56575742	rs773644	T	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	56578682	rs7136420	T	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:106,110:0.51:216
chr12	56580133	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-0.608;QD=2.45;ReadPosRankSum=0.460;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	56604473	rs7975405	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	56604489	rs7962107	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	56618412	rs73342304	C	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr12	56618984	rs58349500	C	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	56625045	rs1274497	T	C	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	56629546	rs111659561	A	G	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,77:0.55:141
chr12	56647641	rs77320661	G	A	2143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=0.620;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:94,107:0.53:201
chr12	56650742	rs1274491	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	56737973	rs2066808	A	G	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	56743367	rs2020854	T	C	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr12	56744033	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.364;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	56744276	rs11575234	C	G	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	56749494	rs2066812	A	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr12	56755058	rs4301822	A	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	56755457	rs11575216	G	C	3560.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:116,164:0.59:280
chr12	56755489	rs11575215	C	G	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:149,200:0.57:349
chr12	56814256	rs10631263	G	GGAT	2830.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	56814570	rs812279	T	G	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	56815717	rs61733875	T	C	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	56818982	rs12824030	G	C	1357.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	56818983	rs35382350	C	CT	1348.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	56822641	rs774028	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	56822690	rs11832580	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	56822987	.	A	AT	122.80	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	56824788	rs6581093	T	C	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	56825561	rs72478990	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	56826061	rs774040	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	56826737	.	C	CAAAA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.05;ReadPosRankSum=-1.085;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	56827694	rs2279665	C	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	56827974	rs2638312	C	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	56845296	rs2643622	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	56845303	rs2088155	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.48;ReadPosRankSum=0.889;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	56862886	rs2657881	T	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	56869971	rs79174190	TTTGTCACCC	T	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	56871314	rs11171862	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr12	56915782	rs808929	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	56956213	rs3759091	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr12	56956453	.	T	G	1114.77	.	AC=1;AF=0.500;AN=2;DP=108;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr12	56982290	rs2470385	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	56992630	rs2242497	C	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	56994170	rs1527140	C	T	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:179,119:0.40:298
chr12	56996715	rs941210	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	56999549	rs202234970	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.529;QD=1.92;ReadPosRankSum=1.576;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr12	57006998	rs7974600	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=1.998;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr12	57007933	rs12314491	A	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr12	57030026	rs2255074	T	C	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr12	57033680	rs12229457	T	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr12	57034015	.	A	AT	319.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.98;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	57058609	rs17541818	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	57065713	rs2958154	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr12	57106660	rs4788	A	T	9616.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr12	57107154	rs1078604	G	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	57109792	rs2958149	A	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	57114100	rs2926743	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	57114869	rs17118953	T	C	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr12	57139769	rs17542816	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	57140410	.	TCACA	T,TCACACA	775.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.500;QD=22.82;ReadPosRankSum=0.856;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:4,21,9:0.62,0.26:34
chr12	57145857	rs138770510	G	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr12	57168020	rs57682836	G	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	57317903	rs7314055	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	57323388	rs7970701	C	G	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	57348662	rs77956681	T	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr12	57349039	rs746049	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	57389623	rs34377647	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:218,133:0.38:351
chr12	57390038	rs35493121	T	C	5173.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:392,278:0.41:670
chr12	57398060	rs111802991	G	A	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:151,125:0.45:276
chr12	57422728	rs56347319	A	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	57423197	rs56128678	T	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr12	57423714	rs56156199	C	G	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:97,158:0.62:255
chr12	57430435	rs4143085	C	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	57435122	rs697222	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr12	57442139	rs2270737	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	57453879	rs140718365	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr12	57454720	rs114352356	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	57462954	rs73116501	C	T	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr12	57486647	rs324019	A	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr12	57492996	rs841718	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	57548364	rs34574998	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:125,75:0.38:200
chr12	57559809	rs1800174	G	A	11785.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr12	57561379	rs1800175	G	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr12	57561451	rs1800176	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	57567180	rs1800177	G	T	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:3,124:0.98:127
chr12	57567762	rs1800194	C	T	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	57569513	rs1800180	G	A	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	57577840	rs35161844	C	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:135,106:0.44:241
chr12	57578288	rs1800181	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	57579727	rs1800182	A	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	57581028	rs6581127	C	G	8546.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr12	57588977	rs1799739	CG	C	23776.73	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr12	57589659	rs1800154	C	T	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr12	57589784	rs7397167	A	C	14586.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr12	57590735	rs7308552	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	57590758	rs1800191	C	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr12	57590797	rs1800156	C	T	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	57590869	rs7308698	T	C	10197.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr12	57591226	rs1800165	T	C	9097.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr12	57591458	rs1800166	C	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	57593894	rs1800159	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	57595066	rs9669595	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	57596855	rs113104289	T	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr12	57598639	rs116017156	C	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	57603417	rs1800162	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	57605168	rs10783814	T	C	9754.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr12	57606386	rs7304504	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	57610616	.	GCCGCCGCTC	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.79;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	57614958	rs7134826	G	T	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr12	57619187	rs200994523	T	TGGC	2595.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:101,72:0.42:173
chr12	57619209	rs7979061	C	G	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	57627717	rs34095989	G	A	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:116,127:0.52:243
chr12	57637593	rs3204635	G	A	4341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.747;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:259,226:0.47:485
chr12	57639158	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.31;ReadPosRankSum=-0.699;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	57639190	rs7139342	C	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	57649840	rs4075325	C	T	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:173,116:0.40:289
chr12	57666405	rs35275303	TG	T	47.25	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	57693060	rs4760126	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,44:0.47:94
chr12	57704005	rs57612216	GA	G	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,59:0.46:128
chr12	57704109	rs11832661	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,53:0.54:99
chr12	57829129	rs560048	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=1.345;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr12	57843014	rs776037	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr12	57843159	rs140970124	T	C	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr12	57849768	rs507562	C	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	57857354	rs10876987	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr12	57858308	rs66887728	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.363;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	57860046	rs7973381	C	T	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:222,155:0.41:377
chr12	57860972	rs11830874	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	57865821	rs2228226	G	C	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	57865928	rs474058	A	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	57866593	.	C	CA	21	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=21;QD=21.0;SC=CACATGGTAACAAAAAAACCA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=57866601;WS=57866583;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr12	57868243	rs34133632	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr12	57869241	rs527226	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	57869447	rs2277318	T	C	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	57869476	rs2277317	G	A	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	57869486	rs2277316	A	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	57869500	rs524522	A	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	57869530	rs3216740	CA	C	2788.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	57869582	rs2277315	T	C	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=26.78;SOR=1.303;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	57870121	rs486699	A	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	57870648	rs512490	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	57871437	rs34160414	C	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	57872983	rs58668629	A	C	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:84,120:0.59:204
chr12	57882467	rs77298381	A	G	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.329;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:66,61:0.48:127
chr12	57891804	rs537161	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	57905412	rs747339	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.036;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	57905687	rs1284467	A	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	57911246	rs28382852	G	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr12	57918002	rs7965140	C	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	57920368	rs34551572	T	C	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	57937611	.	A	T	1676.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr12	57937941	.	G	A	2178.77	.	AC=1;AF=0.500;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:121,112:0.48:233
chr12	57961444	rs371727146	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.193;QD=2.80;ReadPosRankSum=-0.831;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr12	57975570	rs775247	A	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	57984967	rs2620683	C	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	57989043	rs1284185	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr12	57994743	rs775235	T	G	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	57995089	rs812873	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	58000378	rs703834	G	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	58005837	rs116953253	T	A	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:58,80:0.58:138
chr12	58008952	rs703833	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	58010163	rs1564374	A	G	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,108:0.57:191
chr12	58018750	rs116098306	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:148,111:0.43:259
chr12	58019472	rs774895	T	G	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	58019495	rs774894	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr12	58022074	rs12322482	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,76:0.55:138
chr12	58023012	rs35287199	CTG	C	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	58023981	rs715930	C	A	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:212,249:0.54:461
chr12	58024278	rs810205	C	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr12	58025813	rs774896	G	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	58026021	rs2258877	A	G	10355.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr12	58026159	rs774897	A	T	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:4,262:0.98:266
chr12	58089413	rs3825078	A	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:78,53:0.40:131
chr12	58089689	rs77586884	C	T	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:124,133:0.52:257
chr12	58090232	rs72303843	AGTCGG	A	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.589;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr12	58090242	.	GGGGC	G	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=0.175;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr12	58110062	.	TG	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.658;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr12	58124803	rs238523	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	58125170	rs140156695	T	C	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:93,68:0.42:161
chr12	58127766	rs238526	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	58129052	.	AAG	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.468;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:109,17:0.13:126
chr12	58135659	rs238530	T	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	58149446	rs1689582	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	58150989	rs35101706	CCA	C	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	58163265	rs77194942	C	T	4240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=3.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.343;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:166,207:0.55:373
chr12	58202307	rs147969047	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr12	58203264	rs12582311	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.205;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	58204283	rs2172521	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	58339610	rs12822306	T	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr12	58345503	rs148331874	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr12	58345606	rs17120203	T	C	5401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.487;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:236,273:0.54:509
chr12	58347320	rs12816216	T	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr12	58350631	rs10122	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr12	59197223	rs1148531	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	59206213	rs77060180	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr12	59266566	rs75850843	G	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:102,68:0.40:170
chr12	59268129	rs10877180	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:161,76:0.32:237
chr12	59274081	rs11442337	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.773;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	59279660	rs11172796	A	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chr12	59280828	rs10877183	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	59284551	rs11172799	G	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	59307848	rs72005968	CA	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.833;QD=6.33;ReadPosRankSum=-0.389;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr12	60113684	rs12315372	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	60113727	rs1693606	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=-0.080;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr12	60113729	rs1693605	G	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=0.248;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr12	60113858	rs1795892	A	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.202;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:30,49:0.62:79
chr12	60113910	rs1795893	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-0.267;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:24,42:0.64:66
chr12	60113936	rs35527852	C	CAG	997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.20;ReadPosRankSum=1.207;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:17,26:0.60:43
chr12	60127590	rs2706309	A	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.035;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:35,37:0.51:72
chr12	60127612	rs2711672	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr12	60129773	rs12300147	A	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr12	62104219	rs7399207	A	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	62114671	rs7485027	T	C	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	62696599	rs11174420	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	62705886	rs10431509	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	62705895	rs12315645	T	C	94.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	62706180	rs10431510	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	62708442	rs10877825	G	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	62715412	rs111666891	CTGTAT	C	4450.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	62717783	rs139681009	CT	C	539.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-1.273;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr12	62717976	rs11174424	G	T	129.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	62778065	rs2044846	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	62785537	rs3213984	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	62797921	rs144022012	T	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr12	62810962	rs10459254	G	A	2102.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.61;ReadPosRankSum=1.896;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr12	62861111	rs6581450	T	C	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	62883990	rs11393430	C	CT	840.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	62888729	rs7135893	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	62892905	rs4025987	C	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	62902420	rs7294404	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	62926398	rs7957417	G	A	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:144,121:0.46:265
chr12	62928633	rs10219555	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,68:0.41:164
chr12	62928747	rs11364534	TA	T	1804.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	62930938	rs77761138	C	T	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr12	62931783	rs75913288	G	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	62931846	rs147032464	ATTTGT	A	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	62932029	rs79088816	C	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr12	62936754	rs732372	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	62954815	rs61752537	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:128,157:0.55:285
chr12	62986620	rs12357	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr12	63042421	rs78348779	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr12	63083429	rs114127898	G	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr12	63083431	rs149302305	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr12	63113828	rs342170	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	63114156	rs2270484	A	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr12	63359011	rs699595	A	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	63359549	rs143590555	ACTGCTG	A,ACTG	8643.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=251;set=Intersection	GT:AF:DP	1/2:0.45,0.55:214
chr12	63359803	.	T	TAAAAAAAAA	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=5.195;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=0.027;QD=5.18;ReadPosRankSum=0.613;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr12	63543552	.	TCTCTCTC	T	1009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=19.05;ReadPosRankSum=0.134;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr12	63543574	.	T	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=9.34;ReadPosRankSum=2.784;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr12	63543576	rs59713720	T	A	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=17.69;ReadPosRankSum=3.080;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr12	63543578	rs10784341	T	A,TCA	2223.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.876;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.78;MQRankSum=0.000;QD=33.69;ReadPosRankSum=0.615;SOR=2.400;set=HC	GT:AD:AF:DP	1/2:7,46,13:0.70,0.20:66
chr12	63544134	rs2228155	T	C	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:179,182:0.50:361
chr12	63544209	rs1042615	A	G	9338.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr12	63544326	rs2228153	G	A	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:151,139:0.48:290
chr12	63544601	rs2228154	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	63954304	rs1054891	T	C	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	63964640	.	G	GAA,GAAA	2792.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.14;MQRankSum=-0.997;QD=26.35;ReadPosRankSum=-2.529;SOR=0.409;set=HC	GT:AD:AF:DP	1/2:3,72,31:0.68,0.29:106
chr12	64041195	rs55655430	C	CATAATA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-2.580;QD=13.28;ReadPosRankSum=-0.833;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	64055081	rs113117975	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	64055347	.	G	GA	49	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=12;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=49;QD=18.3333333333;SC=CTTTTTTTCTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=64055355;WS=64055337;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	64061745	rs11175110	C	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	64062023	rs10878073	A	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr12	64062052	rs10878074	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:143,144:0.50:287
chr12	64062065	rs10878075	T	C	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:153,153:0.50:306
chr12	64078548	rs61935227	G	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=0.410;QD=2.61;ReadPosRankSum=-1.887;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:180,29:0.14:209
chr12	64078557	rs61935228	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-0.299;QD=2.20;ReadPosRankSum=1.012;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:184,23:0.11:207
chr12	64078612	rs61935229	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-0.664;QD=0.97;ReadPosRankSum=0.477;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:202,37:0.15:239
chr12	64118558	rs3864455	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr12	64174680	rs3791156	G	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	64202890	rs1876465	C	G	237.89	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	64472803	rs789710	A	T	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr12	64474003	rs56996618	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	64474023	rs59896917	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.342;QD=5.62;ReadPosRankSum=1.314;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr12	64485593	rs5798729	A	ACC	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	64519806	rs789722	T	C	5397.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:128,262:0.67:390
chr12	64519890	rs12303060	C	T	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:66,118:0.64:184
chr12	64521567	rs10878106	C	G	8165.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:182,368:0.67:550
chr12	64587633	rs699638	C	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	64609562	rs2335390	C	T	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	64661199	rs114981037	G	A	164.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.31;ReadPosRankSum=-0.431;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	64661209	rs1657057	A	C	297.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	64661210	rs1657058	T	C	266.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	64668659	rs6581534	G	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:108,55:0.34:163
chr12	64669018	rs5798743	AT	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.95;ReadPosRankSum=-1.036;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	64669090	rs1002392	C	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=2.322;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr12	64669270	rs10878132	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr12	64671412	rs10624687	C	CTA,CTATA	3594.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=162;set=Intersection	GT:AF:DP	1/2:0.60,0.28:149
chr12	64678416	rs12581905	G	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.316;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:224,106:0.32:330
chr12	64710319	rs7310610	C	G	4764.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:153,235:0.61:388
chr12	64712511	rs7955105	A	G	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	64712546	rs113411861	A	AGTT	6844.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:105,172:0.62:277
chr12	64724815	rs11392869	T	TA	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.267;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr12	64833249	rs10878172	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.361;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	64838752	rs71092967	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.843;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr12	64838922	rs6581565	G	T	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.147;QD=7.18;ReadPosRankSum=1.092;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:180,117:0.39:297
chr12	64875787	rs7486100	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.101;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	64883761	rs10878177	C	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.20;ReadPosRankSum=-0.857;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	64891401	.	C	CTT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.315;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr12	65004520	rs77813527	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:155,66:0.30:221
chr12	65004550	rs117122731	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr12	65016473	.	CTT	C	317.50	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr12	65085444	.	TGGGGGATGGGAAGAGAAGAGAGTTGGAGGGCA	T	1301	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=5;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=1301;QD=442.333333333;SC=TGGCTATTGATGGGGGATGGG;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=3;WE=65085483;WS=65085434;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr12	65110530	rs2230292	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr12	65134536	rs1690277	C	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	65138435	.	T	G	553.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	65146532	rs1147096	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	65146676	rs1147095	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr12	65150485	rs2620733	C	T	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	65150526	rs17100642	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.558;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:91,37:0.29:128
chr12	65225809	rs11829183	G	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr12	65237012	rs146935911	C	G	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,92:0.71:129
chr12	65260537	rs74099695	T	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:188,104:0.36:292
chr12	65264296	rs10506482	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	65269047	rs939875	G	A	11490.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:2,448:1.00:450
chr12	65272219	rs17100764	G	A	6732.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:168,316:0.65:484
chr12	65462429	rs34245453	ATGTG	A	1872.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr12	65477609	rs71096022	C	CTCTTTTCTTT,CTCTTTTCTTTTCTTTTCTTT	536.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;QD=41.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/2:0,7,6:0.54,0.46:13
chr12	65514266	rs7301320	T	C	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:143,108:0.43:251
chr12	65565001	rs35470165	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr12	65633880	rs34562240	GTGAT	G	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.729;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr12	65762703	.	ACC	A,AC	3352.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=4.425;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.86;MQRankSum=0.000;QD=22.50;ReadPosRankSum=0.200;SOR=0.179;set=HC	GT:AD:AF:DP	1/2:10,45,94:0.30,0.63:149
chr12	65856899	rs61921506	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-2.082;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr12	65881702	rs11175783	C	T	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.527;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.519;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:181,64:0.26:245
chr12	66152029	.	A	G	248.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr12	66245568	rs17101839	C	T	2658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.779;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:77,130:0.63:207
chr12	66260161	rs112996144	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr12	66260547	.	A	C	3413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.609;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:102,159:0.61:261
chr12	66308644	rs10878345	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr12	66346121	rs1480469	A	G	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:74,134:0.64:208
chr12	66517828	rs2464304	T	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	66531694	rs1185629	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	66533329	rs11176056	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	66546100	rs8793	A	G	3353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.900;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:77,161:0.68:238
chr12	66553970	.	C	T	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.180;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:92,173:0.65:265
chr12	66597701	rs1882200	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr12	66605228	rs1152888	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	66641813	rs11465988	C	T	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:78,149:0.66:227
chr12	66716345	rs11325442	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.384;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr12	66725160	rs1185244	C	T	15512.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr12	66725202	rs1168312	C	T	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.536;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:514,218:0.30:732
chr12	66731864	rs1168329	C	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	66732057	rs1183274	C	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	66770869	rs149294743	G	C	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:157,111:0.41:268
chr12	66771108	rs35635542	AT	A	1215.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	66771121	rs148141593	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	66786073	rs7970076	A	G	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr12	66786091	rs13277	G	C	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr12	66786341	rs7970771	G	A	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	66786644	rs2270594	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	66814466	rs7397861	C	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:190,93:0.33:283
chr12	66814487	rs7397862	C	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:202,89:0.31:291
chr12	66826527	rs143524823	GAAGT	G	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	66826555	rs6581694	A	G	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	66838243	rs10878422	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	66838272	rs63070262	C	CAA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.034;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-0.504;QD=4.31;ReadPosRankSum=-1.083;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr12	66909389	rs12316942	C	T	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	66911771	rs11838180	G	T	2621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=0.271;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:75,132:0.64:207
chr12	66932832	rs66522623	T	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr12	66933149	rs10219689	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.048;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr12	66990485	rs7976984	T	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	67198058	.	C	T	833.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr12	67688718	rs7976686	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	67700124	rs17854617	G	A	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:124,214:0.63:338
chr12	67700398	rs34019113	A	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:95,43:0.31:138
chr12	67701103	rs812325	G	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:56,75:0.57:131
chr12	67701374	rs3736630	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	68052178	rs3741644	G	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:55,101:0.65:156
chr12	68552041	rs2234686	TA	T	1015.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:5,58:0.92:63
chr12	68646521	rs2227491	T	C	8869.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:207,432:0.68:639
chr12	68688939	rs7958232	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	68707576	rs4575357	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr12	68708761	rs2306393	C	T	19597.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,759:1.00:759
chr12	68717038	rs80219525	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	68719216	rs2870812	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	68720335	rs17224845	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr12	68720627	rs962976	G	A	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	68721040	rs962977	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	68724951	rs3741808	G	T	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	69021043	rs140347699	CATACA	C	1973.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr12	69042454	.	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=1.757;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:105,28:0.21:133
chr12	69042690	rs3213921	T	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr12	69044281	rs12310406	G	T	298.31	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr12	69048138	rs61330926	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-0.000;QD=14.29;ReadPosRankSum=-0.224;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	69050389	rs143089639	TAAAC	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=-1.440;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	69052994	rs73332561	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=2.041;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:24,51:0.68:75
chr12	69084541	rs11608404	A	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.927;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:94,27:0.22:121
chr12	69090573	rs35640989	C	CT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.687;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	69096626	rs201673769	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.678;QD=1.46;ReadPosRankSum=1.340;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr12	69103154	rs10047603	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-1.152;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	69128684	rs74839420	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	69141902	.	A	G	188.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	69153071	rs12316701	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr12	69186534	rs12099962	T	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,74:0.69:107
chr12	69207162	rs1470383	G	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	69218038	rs2291857	T	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	69250481	rs3741599	T	C	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.740;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:199,78:0.28:277
chr12	69252594	rs58495062	G	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	69252715	rs1143653	A	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.234;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr12	69279736	rs2701085	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr12	69279764	rs79448109	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	69326547	rs7978197	C	T	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:70,126:0.64:196
chr12	69633379	rs2305642	A	G	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	69645864	rs490872	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	69646914	rs2305641	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	69652336	rs5798930	G	GT	1235.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr12	69653146	rs2231700	T	C	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	69667075	rs1463335	T	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	69744104	rs686407	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr12	69745868	rs596919	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.10;ReadPosRankSum=-0.180;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	69753595	rs622656	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	69753830	rs623853	G	A	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	69753847	rs554591	T	C	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	69756762	rs10784775	G	A	750.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.981;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=2.083;QD=19.25;ReadPosRankSum=0.485;SOR=0.171;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr12	69759551	rs11286051	AT	A	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	69764388	rs2291005	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	69967862	rs547497	G	A	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	69979115	rs2601007	G	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	69980028	rs485288	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	69980141	rs484319	G	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	69981862	rs530701	G	A	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	69982129	rs710777	G	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	69985771	rs137875319	CTT	C	574.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	69987494	rs710773	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	69991627	rs710765	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	69993878	rs74102912	A	G	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=1.125;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:21,41:0.66:62
chr12	70065126	rs5798946	CT	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.170;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr12	70066840	rs143082425	GT	G	1580.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr12	70070942	rs710718	A	G	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr12	70078172	rs710714	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	70088085	rs3050191	AGT	A	2402.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr12	70091356	rs710710	G	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	70091432	rs775429	T	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	70188142	rs17107111	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	70190193	rs74576070	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr12	70195293	rs10879014	T	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	70195585	rs145460630	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr12	70206894	rs1305051	ATAG	A	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr12	70209121	rs139555957	ATC	A	1233.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:98,43:0.30:141
chr12	70272666	rs74101365	T	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	70273303	rs1240286	C	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	70273985	rs7295793	T	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:199,125:0.39:324
chr12	70274101	rs7310544	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,38:0.32:118
chr12	70274160	rs1240287	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	70280581	rs74101368	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	70280797	rs1612447	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	70289124	.	GT	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=0.355;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr12	70297317	rs10784805	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.06;ReadPosRankSum=-1.169;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	70304510	rs10879052	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr12	70304763	rs74101388	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,48:0.74:65
chr12	70304860	rs989879	C	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	70321450	rs1239822	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	70326196	rs7964219	G	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr12	70330063	rs61754225	C	T	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:132,221:0.63:353
chr12	70330087	rs813147	A	G	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr12	70330356	rs35051828	C	T	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:50,143:0.74:193
chr12	70352021	rs2307087	C	T	6036.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:130,282:0.68:412
chr12	70352153	rs74855150	A	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:37,89:0.71:126
chr12	70352198	rs35912210	CT	C	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.824;QD=11.11;ReadPosRankSum=0.615;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:20,52:0.72:72
chr12	70736113	rs17108008	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	70737853	rs3215328	AT	A	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.891;QD=17.21;ReadPosRankSum=0.959;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	70740194	rs3817487	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	70794186	rs710651	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr12	70913818	rs630608	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	70915333	rs73330183	T	G	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,95:0.60:158
chr12	70915347	rs369876	A	G	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	70926028	rs112516834	A	AATCT	1853.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr12	70928724	rs582954	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	70932572	rs17226374	T	C	244.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr12	70932573	rs11332712	TA	T	235.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr12	70933687	rs919595	A	G	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	70934753	rs73332218	T	C	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:133,287:0.68:420
chr12	70938176	rs4761221	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr12	70949620	rs2278341	G	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	70949973	rs11424259	A	AT	1057.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:8,58:0.88:66
chr12	70953277	rs2303963	T	C	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:285,164:0.37:449
chr12	70953456	rs2303962	T	C	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr12	70953477	rs34465365	C	T	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr12	70956475	rs59726208	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	70956515	rs58922294	TA	T	1010.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr12	70960370	rs34902691	G	A	5592.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:136,269:0.66:405
chr12	70963386	rs2034011	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr12	70963770	rs17108351	A	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr12	70964750	rs1431257	G	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr12	70965902	rs61930308	G	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,61:0.63:97
chr12	70965955	rs1125122	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	70970449	rs11178304	C	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=38;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-0.000;QD=13.47;ReadPosRankSum=1.292;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	70984042	rs1465933	G	A	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:120,160:0.57:280
chr12	70990134	.	C	CA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-1.524;QD=3.90;ReadPosRankSum=0.895;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	71003360	rs2717431	T	C	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.923;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr12	71003424	rs7961490	G	A	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:328,162:0.33:490
chr12	71029365	rs143061370	AAAAC	A	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr12	71029431	rs2717417	C	T	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:60,124:0.67:184
chr12	71029733	rs2584021	C	T	2984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=2.101;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:74,141:0.66:215
chr12	71050694	rs5798997	T	TA	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	71078135	rs7958846	G	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	71092258	rs78554851	T	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	71094955	rs35387004	C	T	4313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.781;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:105,203:0.66:308
chr12	71139664	rs3803036	T	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	71158270	rs3751287	T	C	609.78	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr12	71314102	rs12830783	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:93,34:0.27:127
chr12	71509836	rs1796329	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	71511971	rs11178616	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=1.805;QD=3.03;ReadPosRankSum=-1.608;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	71522953	rs1796330	G	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	71523043	rs1705263	C	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.10;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	71526677	rs1397566	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	71531889	rs1798093	T	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr12	71532879	rs77625335	A	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:277,109:0.28:386
chr12	71532922	rs2971392	A	C	9945.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:510,499:0.49:1009
chr12	71533067	rs77376607	A	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:447,258:0.37:705
chr12	71533622	rs79443892	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr12	71898287	rs7136209	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr12	71898358	rs7307225	T	C	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:133,60:0.31:193
chr12	71947173	rs1148985	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr12	71960208	rs1797372	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr12	71960329	rs1797373	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr12	71960533	rs1797374	G	A	2609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-1.538;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:330,158:0.32:488
chr12	71960584	rs1726469	T	C	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=2.060;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:381,176:0.32:557
chr12	72004884	rs34631263	G	GA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.189;QD=3.17;ReadPosRankSum=0.045;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr12	72007084	rs7305505	G	A	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr12	72013832	rs1298463	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:93,47:0.34:140
chr12	72019989	rs55719302	T	TAC	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.378;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=6.33;ReadPosRankSum=1.056;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:118,50:0.30:168
chr12	72022556	rs1148996	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	72023336	.	TAC	T	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=9.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=1.301;SOR=2.550;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	72026872	rs1011331	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr12	72028607	rs34399921	TA	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.913;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr12	72030252	rs1149006	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr12	72058416	rs3741691	G	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr12	72067966	rs5799053	A	AT	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr12	72091025	rs3741690	T	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr12	72163723	rs63493962	CT	C	277.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	72176401	rs34264044	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:40,89:0.69:129
chr12	72248157	rs115752849	G	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	72266651	rs139515644	ATAAT	A	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.65;ReadPosRankSum=-1.800;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	72286961	rs146506544	A	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=-0.921;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	72287159	rs10467177	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	72307616	rs3759171	A	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.324;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,40:0.50:80
chr12	72312268	rs11178985	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr12	72332923	rs41265611	ATCT	A	7567.73	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:112,192:0.63:304
chr12	72372601	rs4760816	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	72372627	rs41317130	A	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr12	72372862	rs7305115	A	G	13946.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr12	72388374	rs1007023	G	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	72388424	rs41317124	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr12	72416235	rs4290270	A	T	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.871;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:245,80:0.25:325
chr12	72425250	rs41317120	C	T	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:52,123:0.70:175
chr12	72666485	rs74594364	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.856;QD=6.00;ReadPosRankSum=1.998;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr12	72666488	rs78720771	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.856;QD=5.94;ReadPosRankSum=2.392;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr12	72666499	rs79761722	A	G,AAGG	2624.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.543;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.77;MQRankSum=-0.115;QD=65.62;ReadPosRankSum=2.418;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:2,13,25:0.33,0.62:40
chr12	72893531	rs1444607	T	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	72935947	rs723867	G	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	72962547	rs11179252	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=0.405;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	73012649	rs111312234	CT	C	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr12	73014824	rs76377291	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.264;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	73014917	rs7139238	A	G	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-2.306;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:26,78:0.75:104
chr12	73015115	rs74105937	G	A	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-0.845;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	73015662	rs2217678	G	A	54.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.70;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	74932159	rs590352	G	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr12	75706720	rs60971359	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.539;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr12	75710004	rs10879900	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.080;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	75760742	rs12366348	G	A	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.150;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:113,48:0.30:161
chr12	75784773	rs7978856	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-1.176;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr12	75785100	rs11180483	C	T	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.999;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:359,147:0.29:506
chr12	75785468	rs4393363	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.163;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr12	75796721	rs7135440	G	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr12	75816612	rs1543946	C	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	75816814	rs144850646	G	GACA	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=1.985;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr12	75875576	rs1909979	C	T	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=2.065;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:143,61:0.30:204
chr12	75889342	rs7137996	T	C	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:72,179:0.71:251
chr12	75900702	rs2704766	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:147,64:0.30:211
chr12	76357719	rs61925128	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	76424937	rs71716769	TTGC	T	9549.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:17,236:0.93:253
chr12	76425476	rs3747549	G	A	2844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.331;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:425,190:0.31:615
chr12	76444510	rs4831914	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	76447792	rs35076461	AT	A	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	76449900	rs1059143	T	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	76450465	rs113043714	TA	T	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.750;QD=1.81;ReadPosRankSum=0.899;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr12	76451696	rs2163913	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr12	76453966	rs4663	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	76461137	rs10785227	T	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	76461145	rs7972289	C	T	116.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=29.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	76461257	rs3214625	T	TA	820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=0.000;QD=13.91;ReadPosRankSum=0.335;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr12	76462515	.	TACACACACACACACACACAC	T,TACACACACACACACACACACAC	547.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=25;set=Intersection	GT:AF:DP	0/1:0.67:21
chr12	76462612	rs10880034	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	76762923	rs10656017	A	AAAT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	76767065	rs71311107	A	AT	1366.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr12	76769209	rs7299563	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	76780051	rs72247585	T	TA	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.259;QD=9.94;ReadPosRankSum=0.100;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	76786349	rs4761423	G	A	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	77158419	rs1017784	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr12	77199250	rs140164197	AACTTG	A	1736.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr12	77202798	rs10778920	A	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=-1.936;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr12	77203008	rs73144902	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.598;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	77214681	rs1477748	G	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	77214788	rs2306142	G	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	77214869	.	G	A	2922.77	.	AC=1;AF=0.500;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	0/1:83,140:0.63:223
chr12	77236968	rs1979743	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	77239420	rs143729859	AAAAT	A	1483.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr12	77243103	.	C	CAAAAAAA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=-1.284;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	77253236	.	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.415;QD=2.07;ReadPosRankSum=-1.107;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr12	77254207	rs35557984	GA	G	2389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.645;QD=12.26;ReadPosRankSum=0.001;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:58,137:0.70:195
chr12	77256477	rs2047226	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	77256681	rs2047227	T	G	5031.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:118,240:0.67:358
chr12	77421869	rs36110778	C	G	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.416;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:58,135:0.70:193
chr12	77421978	rs375510532	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.516;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr12	77438607	rs2242383	T	C	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	77449790	rs310791	A	G	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:8,251:0.97:259
chr12	77965833	rs78775702	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=0.888;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	77965859	rs17043896	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr12	78225374	rs10735309	A	G	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	78334053	rs1731740	G	C	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	78334179	rs17817265	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:164,82:0.33:246
chr12	78362578	rs17044634	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.806;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr12	78392328	rs79741620	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	78443692	rs187557766	G	A	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.86;ReadPosRankSum=-0.121;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr12	78443700	rs12308978	A	G	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=0.960;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr12	78510374	rs2694680	T	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	78511755	rs300442	T	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	78513833	rs55670442	T	TATATA	312.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	78530979	rs1852464	G	A	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	78531207	rs300462	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	78538648	rs411935	T	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	78540174	rs34144410	TA	T	583.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	78562687	rs1726431	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	78569059	rs2442134	G	A	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	78570914	rs1020462	G	C	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:73,148:0.67:221
chr12	78571186	rs1020461	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	78582362	rs300513	T	C	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	78582566	rs400289	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	78590946	rs300498	A	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	78590983	rs300497	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr12	78591249	rs981213	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	78592992	rs11272983	ATGGGAACATTATTAC	A	2926.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr12	78594405	rs3214044	T	A	235.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.50;MQRankSum=1.352;QD=18.13;ReadPosRankSum=-0.673;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	78598891	rs9971904	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:69,98:0.59:167
chr12	79611374	rs2037743	C	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:333,123:0.27:456
chr12	79611536	rs2400390	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	79685913	rs2272500	C	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr12	79747487	rs1732664	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	79952577	rs10778679	G	C	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	79998637	rs7979987	G	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	80014907	rs2307223	A	C	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	80083792	rs8176805	G	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	80169497	rs5799439	TA	T	371	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:4,25:0.86:29
chr12	80175764	rs2111687	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	80201271	rs34190005	TTA	T	178.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	80216060	rs3849223	C	A	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	80602001	rs1244908	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	80604800	rs17006505	A	C	258.56	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr12	80613570	rs71717494	C	CT	1893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.897;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:42,130:0.76:172
chr12	80626970	rs1451105	T	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	80632596	rs143126749	TTG	T	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.646;QD=1.08;ReadPosRankSum=0.539;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:138,22:0.14:160
chr12	80645734	rs11438265	A	AT	603.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	80645799	rs2100258	A	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.68;SOR=1.279;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	80647155	rs10862083	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr12	80648399	rs7295623	C	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	80650027	rs73358932	T	C	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-3.207;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:292,119:0.29:411
chr12	80650276	rs147846753	T	TCAAA	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	80655692	rs10778721	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	80660499	rs7313132	T	C	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	80661184	rs146668579	TA	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.133;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr12	80661187	rs9783515	A	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.133;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr12	80663825	rs11324174	GA	G	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr12	80663853	rs114006737	C	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr12	80665397	rs4483657	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-1.181;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr12	80672064	rs1376384	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	80696475	rs12304169	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr12	80707183	rs149841315	T	A	73.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	80707210	rs56658695	A	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	80707285	rs12316424	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr12	80712307	rs7963215	A	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	80712420	rs10778725	G	A	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	80722403	rs12825060	A	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	80723036	rs7304059	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	80729948	.	CT	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.254;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr12	80730635	.	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.309;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	80733078	rs10715159	GT	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=16.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.278;SOR=2.815;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	80746234	rs147703967	G	GAAT	3289.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	80747242	rs7297767	A	G	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	80749392	rs6539501	A	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	80752533	rs35397172	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr12	80752660	rs2034528	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	80760032	rs4842349	G	T	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	80760290	rs34430075	G	GA,GAT	585.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	0/1:0.64:33
chr12	80760291	.	T	A	607	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=3;MGOF=7;MMLQ=25;MQ=60.0;NF=11;NR=12;PP=607;QD=27.9030961977;SC=TATATATAGGTTATATATATA;SbPval=0.59;Source=Platypus;TC=27;TCF=13;TCR=14;TR=23;WE=80760299;WS=80760280;set=Platypus	GT:AD:AF:DP	1/1:4,23:0.85:27
chr12	80760291	rs35874282	T	TA	913.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=1.893;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	80760470	rs34113015	GT	G	906.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	80761465	rs2717482	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	80765741	rs1037336	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	80818764	rs10506826	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	80828843	rs9669382	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	80830218	.	T	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-0.906;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr12	80838012	rs10746166	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	80838175	rs60216135	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.730;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,30:0.30:99
chr12	80838354	rs112125750	T	TATATG	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	80840771	rs7311270	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.622;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr12	80841748	rs58028512	GA	G	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr12	80841922	rs10047561	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.042;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr12	80842026	rs10047551	A	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr12	80842109	rs80208221	A	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr12	80842161	rs10047552	A	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr12	80848916	rs12308829	T	C	1146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.205;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr12	80848917	rs12313529	G	A	1146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.186;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr12	80849328	rs4482094	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	80852758	rs10862125	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.665;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr12	80853424	rs4439581	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.486;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr12	80855597	rs4499068	T	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	80855745	rs55852310	A	T	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:119,227:0.66:346
chr12	80855818	rs7976388	A	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:140,76:0.35:216
chr12	80855825	rs60342585	C	T	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:71,133:0.65:204
chr12	80855856	rs4448754	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:88,33:0.27:121
chr12	80862006	rs12296663	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	80862464	rs12296942	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.249;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr12	80878143	rs10862139	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.754;QD=5.52;ReadPosRankSum=-1.272;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr12	80878174	rs7311413	T	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.230;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.725;QD=11.04;ReadPosRankSum=0.475;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr12	80878181	rs56351124	C	CT	719.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.739;QD=10.91;ReadPosRankSum=0.408;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr12	80878187	.	T	TTTTC	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.015;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr12	80878317	rs57971665	G	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.843;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr12	80888667	rs11114479	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr12	80889165	rs145970310	T	TTTG	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	80889829	rs10778752	T	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.717;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:70,25:0.26:95
chr12	80890325	rs56929349	T	TG	1211.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,44:0.27:166
chr12	80900335	rs7975096	G	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr12	80900348	rs7965277	T	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.710;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:46,36:0.44:82
chr12	80900495	rs7976085	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.233;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr12	80928557	rs1554840	T	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	80933465	rs2222752	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	80933609	rs61729278	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr12	80933785	rs7954867	A	C	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	80935345	rs6539524	T	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	80935411	rs7975340	G	C	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=3.332;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:160,71:0.31:231
chr12	80936082	rs11114503	C	T	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	80940231	.	A	G	25	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=2;NR=1;PP=25;QD=19.9237375157;SC=CATGCTTATTAAACTATAGGT;SbPval=0.33;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=80940239;WS=80940221;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	81007527	rs7963963	T	C	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr12	81007699	rs7961082	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	81009907	rs146609467	CAT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.859;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr12	81013048	rs9669253	A	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr12	81062958	rs11114558	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-2.539;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr12	81063264	rs1163041	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,18:0.24:74
chr12	81110765	rs1163261	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr12	81205198	.	G	GTA	45	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=45;QD=27.0;SC=ATGTGTGTGTGTATATATATA;SbPval=0.72;Source=Platypus;TC=15;TCF=7;TCR=8;TR=2;WE=81205206;WS=81205194;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr12	81226432	rs12297928	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=-1.383;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr12	81226436	rs12311734	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.35;ReadPosRankSum=-2.100;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr12	81329536	rs2682818	A	C	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	81624964	rs2293651	A	T	181.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.53;ReadPosRankSum=-0.875;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr12	81655913	rs10862276	C	T	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr12	81660830	rs372090351	C	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:165,85:0.34:250
chr12	81660963	rs35647579	C	CA	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr12	81661822	rs56241008	C	T	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.722;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:131,146:0.53:277
chr12	81661909	.	TTC	T	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.777;QD=2.70;ReadPosRankSum=3.064;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr12	81661945	rs6539566	A	T	267.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=0.000;QD=22.30;ReadPosRankSum=1.741;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	81688958	rs1882188	C	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	81688970	rs1882187	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	81696317	rs12312518	T	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr12	81696338	rs12311061	A	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:51,103:0.67:154
chr12	81696399	rs1921053	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.190;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:183,70:0.28:253
chr12	81696613	rs12317365	G	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	81741179	rs140743761	T	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr12	81741462	rs34187367	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:129,56:0.30:185
chr12	81746835	rs2060206	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr12	81751813	rs11835074	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr12	81761866	rs143474177	G	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.037;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:120,55:0.31:175
chr12	81762478	rs10506275	G	C	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:39,106:0.73:145
chr12	81769581	rs10862301	C	T	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:110,153:0.58:263
chr12	81833745	rs2272083	G	T	4523.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:149,223:0.60:372
chr12	81905954	rs74602323	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr12	82617441	rs76702519	C	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-1.170;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:201,84:0.29:285
chr12	82617454	rs17009348	T	G	8664.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	82751955	rs6539662	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr12	82783668	rs10778908	C	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:59,91:0.61:150
chr12	82792787	rs4296098	C	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr12	82828426	rs10683876	T	TATAAG	4479.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.33;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	82832418	rs2717448	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	82850427	rs2731290	A	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	82871155	rs74106545	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.199;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	82872913	rs79897492	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	83324499	rs10746259	G	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	83358930	rs2403023	A	G	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr12	83424450	rs199856400	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.597;QD=1.86;ReadPosRankSum=-0.316;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr12	83424455	rs11115554	A	T	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.648;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-1.415;QD=11.55;ReadPosRankSum=0.944;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr12	83444832	rs140367143	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr12	83455701	.	T	TTTTTG	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.487;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=11.282;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.594;QD=9.97;ReadPosRankSum=1.359;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr12	85440932	rs144982007	AAAAAAAATT	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=1.434;QD=12.07;ReadPosRankSum=0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	85449465	rs7974418	T	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	85451017	rs6539881	G	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	85492336	rs114389021	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr12	85531790	rs168615	A	G	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	85556602	rs7971976	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-1.398;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr12	85638645	rs5799725	GA	G	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.452;QD=3.44;ReadPosRankSum=0.781;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:102,47:0.32:149
chr12	86270609	rs112838319	G	GA	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	86373271	rs7958826	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,108:0.67:162
chr12	88177722	rs1796320	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr12	88177791	rs1675574	C	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:191,121:0.39:312
chr12	88178271	rs112316052	TGCC	T	3324.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:224,99:0.31:323
chr12	88379566	rs10858676	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	88380094	rs10777084	T	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	88381506	rs11104705	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	88390284	rs10858678	G	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	88391758	rs7957000	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.667;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	88453608	rs2471512	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.25;ReadPosRankSum=-0.176;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	88454594	rs11405846	T	TA	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr12	88473049	rs2468245	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr12	88478316	rs11356711	TA	T	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	88483272	rs10717563	TA	T	2686.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:66,146:0.69:212
chr12	88496838	rs2471532	C	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	88500404	rs76460170	T	C	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr12	88505078	rs2468255	T	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	88508967	.	A	C	110.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	88522823	rs71082425	A	AC	1801.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr12	88522936	rs79458642	C	CTTA	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	88547277	rs2468230	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	88548008	rs12321595	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.095;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	88566334	rs11104747	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.859;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	88582871	rs201059192	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=-1.437;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	89743223	rs704075	G	A	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr12	89744773	rs770087	A	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:152,64:0.30:216
chr12	89853408	rs4842658	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=26.38;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	89853694	rs7953615	G	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	89861265	rs9308287	C	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	89861529	rs10506972	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	89864432	rs10777167	T	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	89865545	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.55;ReadPosRankSum=0.257;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	89866054	rs59139895	TAGAAAGAAGA	T	4702.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:78,120:0.61:198
chr12	89885923	rs6538189	C	A	288.79	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr12	89885942	rs6538190	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	89916811	rs2230283	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:55,101:0.65:156
chr12	89917518	rs2230281	A	G	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	89918677	rs11105310	C	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	90015579	rs35089871	C	CA,CAA	593.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.000;QD=16.49;ReadPosRankSum=0.699;SOR=0.859;set=HC	GT:AD:AF:DP	1/2:5,20,11:0.56,0.31:36
chr12	90024549	.	A	AATATATAAATAT	255.77	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=36.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	91333987	rs11105878	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.190;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr12	91334194	rs4520662	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	91340252	rs5799966	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.614;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	91372042	rs66600255	GA	G	162	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.693;QD=9.53;ReadPosRankSum=0.854;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr12	91449984	rs12320366	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:253,131:0.34:384
chr12	91449990	rs2735333	C	T	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:134,266:0.67:400
chr12	91540103	rs3138288	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.90;ReadPosRankSum=-1.169;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	91540128	rs71097878	CT	C	91.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=0.253;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	91545513	rs3138268	G	A	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:216,88:0.29:304
chr12	91547030	rs3138262	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr12	91550784	rs11394030	A	AT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.328;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr12	91550829	rs3138246	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr12	91558424	rs3138221	G	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.748;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:125,39:0.24:164
chr12	91566496	rs3138184	T	G	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=1.111;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:100,37:0.27:137
chr12	91566571	rs142247918	TAAAGAGTCTAC	T	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:105,29:0.22:134
chr12	91566652	rs150194596	A	AAG	425.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	91572404	rs3138168	A	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.470;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr12	91572415	rs3138167	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.020;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr12	92381543	rs12303247	G	T	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:68,110:0.62:178
chr12	92382871	rs111752553	A	G	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-0.541;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:63,115:0.65:178
chr12	92539344	rs709223	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	92539378	rs1049979	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	92816272	rs139203566	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.206;QD=11.44;ReadPosRankSum=-0.570;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	92818497	rs142008257	C	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr12	92818786	rs1515565	A	G	1190.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=-0.607;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,48:0.98:49
chr12	92821860	rs11284604	CT	C	4741.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:86,139:0.62:225
chr12	93131203	rs2036553	A	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.362;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:267,104:0.28:371
chr12	93147907	rs9669519	A	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	93150102	rs924326	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	93155399	rs201381357	GAAGAAAGA	G	394.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	93155535	rs1504907	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr12	93196422	rs10745623	T	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	93202801	rs7970286	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:133,65:0.33:198
chr12	93206878	rs3925797	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	93226423	rs142208633	A	G	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:132,247:0.65:379
chr12	93229176	.	CTTTTTTT	C	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=-0.000;DP=45;ExcessHet=3.0103;FS=15.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.90;ReadPosRankSum=0.699;SOR=2.206;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	93236402	rs7300619	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	93236419	rs7316894	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.736;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr12	93247775	rs3065021	G	GATA	766.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.31;ReadPosRankSum=0.348;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	93258498	rs11106721	A	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.315;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	93289284	rs56326442	GA	G	613.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.028;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,49:0.83:59
chr12	93398302	rs3924467	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:188,105:0.36:293
chr12	93609340	rs7305552	A	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	93721949	rs11380531	A	AC	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	93771138	.	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-1.518;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:102,33:0.24:135
chr12	93771224	rs35443572	T	C	7698.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:151,350:0.70:501
chr12	93835692	rs114496701	C	A	6466.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:151,309:0.67:460
chr12	93863162	rs4761721	C	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	93864474	rs1552861	A	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	93873019	rs112351142	G	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	93873089	rs34328828	C	CA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-0.989;QD=6.54;ReadPosRankSum=-0.040;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	93894779	rs6538424	A	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	93894823	rs6538425	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	93897779	rs35963955	C	CT	738.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.371;QD=19.97;ReadPosRankSum=0.405;SOR=0.602;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr12	93898249	rs7971966	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	93967035	rs930316	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr12	94132057	rs6538449	G	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:121,59:0.33:180
chr12	94132186	rs6538450	T	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:107,66:0.38:173
chr12	94253033	rs10859603	T	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	94287682	.	GA	G	1103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-0.341;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:61,89:0.59:150
chr12	94287948	rs73367306	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr12	94543506	rs2230754	C	T	11484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=2.003;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:291,541:0.65:832
chr12	94562802	rs2361358	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	94562875	rs2361359	C	G	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	94563134	rs3214968	A	AT	1386.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;MQRankSum=0.389;QD=23.11;ReadPosRankSum=1.070;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr12	94575157	rs3794220	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=1.909;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	94580286	rs3751189	T	C	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-2.101;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:97,46:0.32:143
chr12	94603249	rs2610671	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	94620264	rs62973962	A	AT	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.469;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr12	94621058	rs2291333	T	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr12	94621138	rs2291332	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	94634187	rs66824619	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr12	94637557	rs864106	C	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	94645255	rs2230757	A	G	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr12	94648471	rs79094045	T	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	94648493	rs7980141	A	G	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	94649103	rs865569	T	C	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	94653227	rs2306664	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:81,35:0.30:116
chr12	94653394	rs2230758	C	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-1.055;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:319,103:0.24:422
chr12	94671565	rs832507	A	G	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	94671743	rs832506	G	C	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	94671922	rs11341959	CA	C	7980.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr12	94672070	rs115372731	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr12	94673509	rs10713724	GC	G	11247.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	94688232	rs1880934	C	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	94697523	.	T	C	223.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.400;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	94697524	rs1057978	T	C	1019.10	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=-1.141;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,38:0.88:43
chr12	94697525	rs1057977	T	C	2219.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=42.69;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	94698880	rs3803071	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	94729586	rs78047124	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	94769758	rs4761611	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	94972290	rs2270893	C	T	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	94975799	rs3747553	G	A	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	94976084	rs3747552	T	C	8481.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr12	94976159	rs3747551	T	C	4445.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:83,201:0.71:284
chr12	94976383	rs3747550	T	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	95044161	rs1274523	A	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	95228007	rs2289031	T	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	95322133	rs2033092	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	95390595	rs10654978	C	CAA	366.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.676;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr12	95396669	rs6538588	A	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	95397552	rs835044	T	C	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	95422121	rs78792011	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.528;QD=4.16;ReadPosRankSum=1.640;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr12	95424508	rs76041623	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:77,42:0.35:119
chr12	95434116	rs249141	T	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	95434453	rs74588396	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	95442815	rs76941968	T	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:115,67:0.37:182
chr12	95453762	.	TAA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=7.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.521;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr12	95453786	rs75382855	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	95475364	rs74485804	A	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.613;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:180,76:0.30:256
chr12	95475444	rs143543201	G	GAT	1066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=3.358;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr12	95488339	rs58060761	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=7.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.712;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr12	95498747	rs200852853	GAA	G,GA	2049.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.149;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.020;QD=14.54;ReadPosRankSum=-0.063;SOR=0.549;set=HC	GT:AD:AF:DP	1/2:19,86,36:0.61,0.26:141
chr12	95500693	rs370928013	CAAAACAA	C	4568.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=63.77;MQRankSum=1.653;QD=25.96;ReadPosRankSum=3.746;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:61,115:0.65:176
chr12	95500700	rs10694512	A	AAAC	1873.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=63.77;MQRankSum=-1.580;QD=10.65;ReadPosRankSum=-2.221;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:118,58:0.33:176
chr12	95500727	rs7138545	C	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:299,128:0.30:427
chr12	95502064	rs55931865	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	95510811	rs6419371	T	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	95603852	rs78481495	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:138,68:0.33:206
chr12	95611141	rs6538617	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:105,68:0.39:173
chr12	95611185	rs6538618	T	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr12	95617829	rs10777677	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:109,63:0.37:172
chr12	95618094	rs62851660	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.147;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr12	95636652	.	CAA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=0.431;QD=3.56;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	95637234	rs1873052	C	T	3657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.166;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:525,235:0.31:760
chr12	95639261	rs7979908	G	A	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	95651093	rs3751272	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.395;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr12	95651888	rs6538624	T	C	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	95656936	rs12305760	A	G	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:154,106:0.41:260
chr12	95668406	rs73376208	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	95668437	rs3816838	G	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr12	95676053	rs3215007	T	TG	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	95694394	rs14121	G	A	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	95702385	rs11107973	T	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.471;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:98,41:0.29:139
chr12	95771236	rs2727663	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	95878751	rs301036	T	G	306.18	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr12	95887949	rs141578207	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr12	95889923	rs17024311	A	G	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.378;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr12	95897997	rs2769469	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	95906603	rs3794261	C	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr12	95926991	rs7135642	T	C	4729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.837;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:138,226:0.62:364
chr12	95927087	rs7305024	C	G	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:106,161:0.60:267
chr12	95927762	rs3812813	T	C	9761.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	95966944	rs4762567	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	96077312	rs17851048	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:108,78:0.42:186
chr12	96106943	rs4129599	T	C	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:71,156:0.69:227
chr12	96180692	rs59294014	T	C	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:203,109:0.35:312
chr12	96253003	rs66876037	A	AG	856.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	96260947	rs7960706	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=1.833;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	96263437	rs10735335	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=1.277;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	96263437	.	GAC	AAA	523	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=2;NR=11;PP=523;QD=44.3436826817;SC=TGAGCCATGTGACTAGAAGAC;SbPval=0.7;Source=Platypus;TC=22;TCF=4;TCR=18;TR=13;WE=96263447;WS=96263427;set=Platypus	GT:AD:AF:DP	1/0:9,13:0.59:22
chr12	96263439	rs10735336	C	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=1.651;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	96284650	rs6538681	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	96288997	rs990573	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	96292140	rs1369826	G	A	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:51,121:0.70:172
chr12	96292284	rs1436127	C	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:181,78:0.30:259
chr12	96292590	rs56773257	A	G	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	96297159	rs6538683	T	C	61.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	96300053	rs11611425	A	T	1021.81	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:5,43:0.90:48
chr12	96312570	rs10777750	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	96313507	rs60971416	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	96337183	rs7955450	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	96346708	rs12318063	A	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.48;ReadPosRankSum=-0.435;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	96348536	rs11108351	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr12	96354455	rs2043608	G	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	96355949	rs3751266	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	96356048	rs112878109	A	AAC	1922.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	96356060	rs3751265	G	A	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	96356280	rs5800239	A	AC	6026.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	96359301	rs4762657	T	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	96359426	rs4762658	C	G	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr12	96360350	rs1025606	A	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	96361514	rs56676973	G	GT,GTT	362.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.881;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=0.458;SOR=0.208;set=HC	GT:AD:AF:DP	1/2:2,10,10:0.45,0.45:22
chr12	96371670	rs3764038	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr12	96371894	rs4762659	C	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	96372026	rs11454735	A	AT	242.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	96374475	rs142147961	T	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:67,94:0.58:161
chr12	96374554	rs6538693	G	A	8874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.50;ReadPosRankSum=1.714;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,203:1.00:204
chr12	96374563	rs6538694	T	C	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	96374614	rs7297245	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	96374672	rs6538695	T	C	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	96374683	rs6538696	C	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	96374750	rs2270318	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	96412589	rs149942316	A	G	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr12	96423017	rs12721568	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=0.253;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	96429226	rs2228060	C	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:222,99:0.31:321
chr12	96641016	rs35332676	C	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:319,151:0.32:470
chr12	96653501	rs4762144	C	T	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	96653638	rs148117224	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr12	96660711	rs7974921	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	96677225	rs66560167	GTT	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.89;ReadPosRankSum=-1.701;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	96691355	rs5800246	T	TA	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.61;ReadPosRankSum=0.179;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	96694162	rs10777781	G	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	96883245	rs3825265	G	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	96883306	rs3809198	C	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr12	96883418	rs3809197	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr12	96894453	rs7959697	A	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	96912598	rs11108564	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	96927778	rs5800251	GT	G	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.289;QD=2.59;ReadPosRankSum=0.654;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr12	96927817	rs2111146	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr12	96927972	rs2160501	A	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.269;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	96927986	rs2160502	A	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.854;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr12	96928044	rs151279126	C	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	96929200	rs11453356	A	AT	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr12	96974472	rs17025569	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:100,63:0.39:163
chr12	96986190	rs2052293	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	96986229	rs7311111	C	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr12	96988037	rs815896	C	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	96992344	rs79690933	T	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-0.000;QD=7.54;ReadPosRankSum=-1.465;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	96992494	rs815890	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr12	97020673	rs10507074	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr12	97023937	rs9919717	A	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	97023991	rs1362949	C	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.89;ReadPosRankSum=-0.414;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	97024016	rs35205059	TG	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.95;ReadPosRankSum=-0.524;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	97051632	rs10710617	AT	A	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	97078749	rs7306382	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	97079040	rs79677423	CC	TG	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	97079043	rs7974634	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	97085107	rs4762319	A	C	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.47;SOR=1.989;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	97098415	rs10860069	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	97098549	rs11108643	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	97102578	rs7968231	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	97133737	rs17326839	T	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	97136218	rs7978894	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	97136239	rs1990828	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	97147503	rs1420649	G	C	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	97151077	rs1019336	C	G	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	97158126	rs10860094	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	97158772	rs58414715	C	CT	66	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	97180430	rs11108696	C	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	97211399	rs369211137	CATGTT	C	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=45.43;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	97211407	.	C	CTAA	862.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=45.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	97211410	rs142077887	G	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	97211528	rs970620	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	97254620	rs1420653	G	A	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr12	97303522	rs11108735	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	97303744	rs61407297	A	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.102;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr12	97311376	rs11333833	CT	C	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	97311541	rs4762339	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	97311584	rs56818741	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.71;ReadPosRankSum=-0.249;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	97328714	rs1610921	TGCTTATAA	T	2273.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	97331219	rs67367047	GT	G	1086.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=6.721;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.316;QD=19.07;ReadPosRankSum=1.550;SOR=2.687;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr12	97337199	rs249579	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	97338696	rs249585	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	97339388	rs249589	G	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	97345955	rs2304697	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	97639049	rs1012314	T	C	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-1.602;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:233,91:0.28:324
chr12	98332667	rs1349300	C	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	98332704	rs1349299	C	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr12	98332904	rs3072891	TCA	T	2436.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	98880901	rs36109874	TA	T	463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=1.540;QD=9.87;ReadPosRankSum=0.167;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr12	98896502	rs3825263	G	A	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	98897361	rs56397627	C	G	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=-1.098;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:33,34:0.51:67
chr12	98897364	rs56118269	C	T	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.95;ReadPosRankSum=-2.012;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr12	98897476	rs78048434	G	A	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.722;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:220,97:0.31:317
chr12	98897645	rs2289377	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr12	98909870	rs59027673	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-2.209;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:200,74:0.27:274
chr12	98925650	rs3213901	G	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	98926555	rs113427737	C	T	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.857;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:35,70:0.67:105
chr12	98926748	rs35998138	T	G	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:101,204:0.67:305
chr12	98926912	rs35645287	T	G	8187.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:155,379:0.71:534
chr12	98927469	rs35761089	G	C	5039.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:146,238:0.62:384
chr12	98938907	.	GT	G	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.178;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr12	98940133	rs112475937	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	98988154	rs74933553	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr12	98991790	rs11544648	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr12	98993356	rs7955363	G	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr12	98993624	rs12297282	A	G	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:347,162:0.32:509
chr12	98993969	rs187361536	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr12	99007356	rs1048908	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	99007623	rs1048906	C	T	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:82,131:0.62:213
chr12	99020476	rs12322444	C	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.638;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:171,79:0.32:250
chr12	99065533	rs74446759	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr12	99100487	rs11335734	TA	T	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	99117402	rs76945651	T	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=9.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.358;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr12	99119355	rs11109583	T	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.635;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr12	99129541	rs7300187	G	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	99175091	rs367840571	AACAC	A,AAC	3385.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.049;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.000;QD=22.27;ReadPosRankSum=0.135;SOR=0.564;set=HC	GT:AD:AF:DP	1/2:19,61,72:0.40,0.47:152
chr12	99175840	rs7954506	A	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr12	99175870	rs17028679	G	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.186;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr12	99478626	rs3803094	C	T	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	99478889	rs7970088	G	A	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	99638021	rs146500914	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	99639930	rs923724	G	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr12	99640428	rs3751323	T	C	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:75,137:0.65:212
chr12	100041939	rs34319076	AT	A	5138.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	100041942	rs79915291	T	A	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	100042040	rs11109968	C	G	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	100042163	rs11109969	A	G	9206.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	100042539	rs112827598	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr12	100219207	rs7138513	A	G	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	100431551	rs12310953	G	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr12	100451234	rs1388441	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	100451442	rs58214704	T	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,55:0.37:149
chr12	100451550	rs113174820	A	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr12	100452695	rs113409099	G	A	5627.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:128,256:0.67:384
chr12	100464068	rs145821926	A	AT	449.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=16.06;ReadPosRankSum=1.372;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr12	100478156	rs57083426	TCACACACACACACACA	T,TCA	2141.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/2:0.49,0.51:55
chr12	100482953	rs112304097	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr12	100496478	.	CTT	C	1115.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.572;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.88;ReadPosRankSum=0.881;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr12	100496482	.	T	C	1124.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.133;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.40;ReadPosRankSum=1.845;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:5,32:0.86:37
chr12	100502062	rs11110244	C	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	100522321	.	G	GA	53	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=14;HapScore=2;MGOF=32;MMLQ=21;MQ=59.31;NF=3;NR=1;PP=53;QD=14.25;SC=TTTATAGAATGAAAAAAAAAA;SbPval=0.56;Source=Platypus;TC=16;TCF=13;TCR=3;TR=4;WE=100522329;WS=100522311;set=Platypus	GT:AD:AF:DP	1/0:12,4:0.25:16
chr12	100550905	.	T	TCCACCCTCCACCCCC	16662.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.136;QD=61.26;ReadPosRankSum=0.767;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:2,270:0.99:272
chr12	100551093	rs60991201	G	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:232,92:0.28:324
chr12	100551464	rs148767345	T	TA	2248.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:190,85:0.31:275
chr12	100552983	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr12	100553356	rs12317945	C	T	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:115,200:0.63:315
chr12	100599498	rs17030036	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	100601680	rs116703045	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.840;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr12	100604221	rs7970382	T	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	100613964	rs7973815	A	G	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:49,132:0.73:181
chr12	100635627	rs56098115	GAA	G,GA	1321.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.185;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=2.236;QD=15.37;ReadPosRankSum=0.499;SOR=0.914;set=HC	GT:AD:AF:DP	1/2:20,35,31:0.41,0.36:86
chr12	100635644	rs201514156	C	G	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.037;QD=16.87;ReadPosRankSum=1.144;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	100646134	rs66721214	CA	C	1581.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr12	100655585	rs80030233	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:65,99:0.60:164
chr12	100676960	rs7965910	C	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.046;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:88,41:0.32:129
chr12	100676987	rs75218007	G	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.068;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr12	100709314	rs28688915	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.083;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	100717298	rs7971710	T	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr12	100732327	rs10860580	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	100806715	rs11568535	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,68:0.74:92
chr12	100813487	rs7967828	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	100988773	rs35690	T	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	101011673	rs150008707	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.12;ReadPosRankSum=2.366;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	101016042	rs10860612	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.222;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr12	101017445	rs1469385	T	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.616;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:127,42:0.25:169
chr12	101127795	rs17030480	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	101133494	rs17478305	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	101133748	rs73145643	A	C	10380.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:233,481:0.67:714
chr12	101133912	rs4764751	G	A	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	101336201	rs34162417	G	C	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	101365007	rs10778090	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	101433990	rs665071	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	101473080	rs144274871	G	A	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=9.709;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.870;QD=7.94;ReadPosRankSum=1.156;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:111,86:0.44:197
chr12	101473109	rs34514121	AC	A,ACC	3366.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.000;QD=18.70;ReadPosRankSum=0.928;SOR=0.607;set=HC	GT:AD:AF:DP	1/2:13,85,82:0.47,0.46:180
chr12	101473272	rs651784	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	101480698	rs77890775	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	101491375	rs1842888	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	101510371	rs349661	T	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	101514504	rs113994352	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	101520648	rs3832861	C	CTG	7832.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	101550961	.	AAC	A	73.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:32,7:0.18:39
chr12	101578113	rs184170742	A	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	101581317	rs35400143	CAA	C	7547.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr12	101584210	rs1069475	T	C	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	101587518	rs1709189	C	T	12255.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr12	101603269	rs114343391	C	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	101682921	rs10778109	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr12	101683929	rs703715	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-0.456;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	101685691	rs4764641	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:156,73:0.32:229
chr12	101685852	rs11110737	G	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.248;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:105,58:0.36:163
chr12	101687043	rs2290720	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	101693499	rs143832042	A	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:161,61:0.27:222
chr12	101693818	rs150558479	G	T	2863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.944;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:315,166:0.35:481
chr12	101693892	rs36020087	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:116,58:0.33:174
chr12	101700550	rs201317255	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr12	101701930	rs7975348	T	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	101705433	rs11405013	T	TC	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.79;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	101714743	rs2305856	T	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr12	101728166	rs2002895	A	G	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr12	101732670	rs11110755	C	T	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.281;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:45,65:0.59:110
chr12	101734277	rs7963896	T	C	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.443;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:62,83:0.57:145
chr12	101734452	rs7977402	C	T	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.509;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:116,174:0.60:290
chr12	101746806	rs10860714	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	101748904	rs2242138	A	C	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:52,99:0.66:151
chr12	101750343	rs147523137	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr12	101750814	rs10082778	T	A	8417.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	101755809	rs12309241	T	C	4594.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:127,216:0.63:343
chr12	101761561	rs2305858	G	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr12	101761867	rs1457564	G	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	101763689	rs3759364	C	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	101764347	rs7977155	C	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr12	101764678	rs10860717	G	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	101777610	rs67382207	TTA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=-2.509;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	101779964	rs4764794	T	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	101799511	rs12230308	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr12	101870792	rs140982207	T	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.079;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	101873596	rs10683589	C	CT	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.132;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:22,50:0.69:72
chr12	101880150	rs12317175	C	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.48;ReadPosRankSum=2.103;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:151,65:0.30:216
chr12	101988803	rs148011345	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:95,56:0.37:151
chr12	102008103	rs825079	T	A	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	102008216	rs111379309	AG	A	1415.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr12	102020488	rs825073	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.56;ReadPosRankSum=-0.422;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	102025925	rs112788142	G	A	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.634;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:138,52:0.27:190
chr12	102025926	rs61935677	C	G	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr12	102030671	rs148472247	T	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	102041967	rs3834936	C	CA	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=60.93;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	102043222	rs142044795	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:113,69:0.38:182
chr12	102043265	rs825051	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr12	102044912	rs825046	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	102045031	rs825045	A	T	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:68,108:0.61:176
chr12	102046595	rs1997204	T	C	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:119,82:0.41:201
chr12	102053401	rs74723080	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.001;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr12	102053716	.	CCTTATCTT	C	560	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=28;MQ=59.54;NF=0;NR=5;PP=560;QD=123.555322287;SC=TTTGTCTTTCCCTTATCTTCT;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=5;WE=102053731;WS=102053706;set=Platypus	GT:AD:AF:DP	0/1:19,5:0.21:24
chr12	102053717	.	C	CTTTTT	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.357;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr12	102053720	.	A	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.351;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr12	102053723	.	T	TTGCCTAGAGGACTTTTTTTTTG	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.431;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr12	102060672	.	TACACACACACACACACAC	T	455.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	102063901	.	C	CCACACACACACACA,CCACACACACACA	317.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=64;set=Intersection	GT:AF:DP	0/1:0.36:36
chr12	102064118	rs7139095	T	C	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	102069264	rs1263786	G	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	102071290	rs1263784	T	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	102072040	rs78515928	A	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:204,113:0.36:317
chr12	102076334	rs12231240	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-2.323;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr12	102078094	rs2303629	G	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:123,56:0.31:179
chr12	102079418	rs2764	G	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	102108345	rs3205421	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:238,115:0.33:353
chr12	102110335	rs2041150	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	102110692	rs77692348	ATT	A	44.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	102111173	rs1544921	G	C	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	102116792	rs3764973	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	102117149	rs11110979	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.35;ReadPosRankSum=-0.732;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	102117589	rs11082	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	102120289	rs7965541	C	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	102120364	rs222508	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	102127262	rs10860779	C	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.568;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:44,24:0.35:68
chr12	102131090	rs11306325	TA	T	435.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;MQRankSum=0.422;QD=13.20;ReadPosRankSum=0.631;SOR=0.337;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr12	102151113	rs3736476	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.088;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr12	102154900	rs759935	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr12	102158763	rs10778148	T	C	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:208,94:0.31:302
chr12	102224491	rs76300806	AGCC	A	4580.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	102295218	rs7295569	TC	CT	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr12	102433564	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=0.992;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	102433572	rs78822651	T	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.28;ReadPosRankSum=-0.298;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	102433811	rs4237982	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	102514184	rs4764863	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr12	102544154	rs112802655	A	G	123.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	103234215	rs59326968	A	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:184,80:0.30:264
chr12	103234479	rs798709	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	103237468	rs772897	G	C	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	103240630	rs1522306	C	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr12	103246735	rs62508624	T	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:98,70:0.42:168
chr12	103248858	rs76887545	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	103248924	rs1126758	C	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	103249164	rs2251905	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr12	103260608	rs2247836	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	103271214	rs79643666	T	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr12	103271350	rs2037639	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:91,28:0.24:119
chr12	103298517	rs1522307	A	G	8442.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:2,336:0.99:338
chr12	103306550	rs17842947	A	G	9828.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	103310715	rs1522295	T	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr12	103310787	rs1522296	G	A	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr12	103352171	rs71438488	C	CGCA	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-2.470;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr12	103352649	rs731682	C	G	12964.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:313,612:0.66:925
chr12	103561786	rs3061447	C	CTA	1870.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	103561973	rs145528404	ACCAATCCAT	A	9207.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr12	103667499	rs7313722	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	103667602	rs7313853	T	C	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	103670917	rs12311525	A	G	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.974;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:126,188:0.60:314
chr12	103696243	rs115037055	G	C	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:294,174:0.37:468
chr12	103699685	rs7488867	C	T	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr12	103762056	rs34385446	CTCTT	C	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=-1.206;QD=14.94;ReadPosRankSum=1.088;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	103762095	.	T	TCTCACACACACA	294.73	.	AC=1;AF=0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;QD=36.84;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	103800129	rs1317390	A	G	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:83,151:0.65:234
chr12	103800290	rs1317389	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	103872281	rs12306102	T	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	103984886	rs56331536	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,22:0.27:81
chr12	103988285	rs17034186	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.806;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr12	104014402	.	AAC	A	187.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	104015999	rs703612	T	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	104025219	rs10668571	T	TAA	214.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	104042736	rs697199	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.937;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr12	104046601	rs1032450	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr12	104048592	rs831425	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr12	104053955	rs11111705	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	104063486	rs59772330	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr12	104064696	rs12424164	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr12	104067812	rs11614418	C	T	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:107,204:0.66:311
chr12	104069836	.	C	CT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=5.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-0.269;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr12	104081793	rs697206	A	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr12	104086631	rs703651	C	T	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:147,184:0.56:331
chr12	104086784	rs75167309	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	104086809	rs114090916	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	104089232	rs17034394	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr12	104089586	rs17034395	C	T	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:131,204:0.61:335
chr12	104092996	rs697210	T	C	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:57,130:0.70:187
chr12	104097162	rs75719042	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	104107497	rs114096344	A	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:121,173:0.59:294
chr12	104109497	rs10861078	T	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	104111687	rs703653	C	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	104119743	rs12300983	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.904;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	104122527	rs76411186	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	104123911	rs10778281	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	104124061	rs4981042	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	104127124	rs75192010	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr12	104131352	rs368787956	TTCTC	T	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.57;ReadPosRankSum=0.631;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr12	104133305	.	CTGTGTGTGTGTGTGTG	C	1460	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=22;MQ=59.78;NF=0;NR=10;PP=1460;QD=146.3;SC=ATTATCAGACCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=28;TCF=0;TCR=28;TR=10;WE=104133328;WS=104133295;set=Platypus	GT:AD:AF:DP	1/0:18,10:0.36:28
chr12	104138918	rs2292687	C	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr12	104140517	rs2056128	A	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	104147207	rs3751198	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	104149022	rs11111748	G	A	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr12	104149229	rs34342881	C	T	6463.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:170,295:0.63:465
chr12	104149251	rs7296626	C	T	11896.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,444:1.00:446
chr12	104149520	rs7313163	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr12	104152856	rs3817303	G	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr12	104153004	rs2271637	C	G	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:120,161:0.57:281
chr12	104159667	rs11111755	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.10;ReadPosRankSum=1.068;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	104159716	rs10861094	C	A	533.89	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr12	104171941	rs141837728	CTT	C	794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=63.68;MQRankSum=3.334;QD=24.84;ReadPosRankSum=0.733;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr12	104171948	rs71098000	T	TAAA,TA	980.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.43;QD=32.69;SOR=0.976;set=HC	GT:AD:AF:DP	1/2:0,22,8:0.73,0.27:30
chr12	104174192	rs1866292	C	T	1986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.758;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:60,93:0.61:153
chr12	104182458	rs2888792	T	C	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,83:0.73:114
chr12	104182542	.	A	G	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.419;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:351,135:0.28:486
chr12	104186946	rs1866295	G	T	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:62,111:0.64:173
chr12	104187092	rs1866296	G	A	6581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=1.235;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:173,309:0.64:482
chr12	104187440	rs11111781	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	104190523	rs12425205	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	104190855	rs73192053	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr12	104192547	rs116620103	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	104208868	rs10861107	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:96,32:0.25:128
chr12	104235229	rs34187551	C	G	3073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=2.076;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:60,141:0.70:201
chr12	104235308	rs116314589	C	G	8395.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:193,394:0.67:587
chr12	104237512	rs1370784	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	104237829	rs1370780	T	G	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:50,103:0.67:153
chr12	104237882	rs2576974	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:164,86:0.34:250
chr12	104260287	rs10778292	T	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:54,120:0.69:174
chr12	104277611	rs76502009	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	104309712	rs2583273	C	T	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	104324148	rs2722187	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	104324445	rs57781511	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	104325649	rs2722188	T	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	104335750	rs58392270	TAA	T	6252.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	104337222	rs3842649	GTAAT	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=42.34;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	104337679	rs114600174	C	T	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:77,138:0.64:215
chr12	104341015	rs1165694	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	104341103	rs7645	C	T	11940.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr12	104341398	rs1165695	T	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	104345253	rs11111854	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	104345412	rs3830654	C	CA,CAA	3313.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=141;set=Intersection	GT:AF:DP	1/2:0.31,0.69:127
chr12	104347193	rs77579203	T	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:91,105:0.54:196
chr12	104349525	rs7310423	T	C	10660.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:280,513:0.65:793
chr12	104349688	rs2700505	T	C	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	104359982	rs4135040	C	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	104366864	rs34854852	A	ATTTTTTT	2242.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=29.90;ReadPosRankSum=-0.625;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:5,70:0.93:75
chr12	104373600	rs3751209	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	104373728	rs151041931	G	GA	45.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr12	104373955	rs3829301	A	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr12	104374831	rs4135098	GAA	G	47.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	104378762	rs35589874	C	CAT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.159;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr12	104378826	rs4135122	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=1.012;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr12	104391473	rs4964435	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.83;ReadPosRankSum=1.655;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	104396838	rs374797654	TAGGG	T	1422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.447;QD=22.58;ReadPosRankSum=0.921;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:25,38:0.60:63
chr12	104459811	rs34011860	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	104459905	rs35879815	T	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	104461711	.	CT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=4.809;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.984;QD=0.72;ReadPosRankSum=1.442;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:210,48:0.19:258
chr12	104461937	rs6539123	C	T	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	104482010	rs3763999	T	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	104489120	rs2272477	T	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	104496724	rs35223676	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	104515108	rs115044997	G	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=1.285;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:21,46:0.69:67
chr12	104515109	.	GA	G	82	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=11;HapScore=4;MGOF=25;MMLQ=27;MQ=59.61;NF=0;NR=6;PP=82;QD=15.1666666667;SC=CCTGAGGAAGGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=28;TCF=0;TCR=28;TR=6;WE=104515117;WS=104515095;set=Platypus	GT:AD:AF:DP	0/1:22,6:0.21:28
chr12	104618454	rs6539128	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.16;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	104645363	rs7960443	G	A	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	104645405	rs7975161	T	C	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	104681099	rs185759255	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:104,55:0.35:159
chr12	104684773	rs11111981	A	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	104684974	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=10.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.538;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	104698582	rs11111987	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:233,89:0.28:322
chr12	104703836	rs7134193	A	G	5753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=0.137;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:99,260:0.72:359
chr12	104703891	.	C	CT	519	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=8;HapScore=1;MGOF=65;MMLQ=27;MQ=59.97;NF=3;NR=17;PP=519;QD=26.8;SC=AGTTTGGGGGCTTTTTTTTGT;SbPval=0.2;Source=Platypus;TC=79;TCF=6;TCR=73;TR=20;WE=104703899;WS=104703881;set=Platypus	GT:AD:AF:DP	0/1:59,20:0.25:79
chr12	104703957	rs35882028	T	A	1456.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	104703957	.	TCT	AGA	1786	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=27;MQ=59.83;NF=2;NR=19;PP=1786;QD=88.069898803;SC=GGAGTCTCACTCTGTGAGACT;SbPval=0.92;Source=Platypus;TC=25;TCF=5;TCR=20;TR=21;WE=104703980;WS=104703947;set=Platypus	GT:AD:AF:DP	1/1:4,21:0.84:25
chr12	104703958	rs34794131	C	G	1456.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	104703959	rs34873076	T	A	1456.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	104703965	rs66665385	ACTCCCAGG	A	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	104703991	rs10861190	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	104707151	rs5018287	A	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.374;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr12	104707180	rs6539137	A	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	104709559	rs4964287	C	T	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:65,132:0.67:197
chr12	104714847	.	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.826;QD=0.68;ReadPosRankSum=-1.689;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:151,48:0.24:199
chr12	104718959	rs10861201	C	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	104733165	rs10861202	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:106,40:0.27:146
chr12	104741958	rs11112003	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr12	104851162	rs17041522	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr12	104985271	rs77877813	G	GTCT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.89;ReadPosRankSum=-1.413;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	104985289	rs1615960	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	104985407	rs11112118	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr12	104985443	rs61938575	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.363;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr12	104985540	rs11112119	G	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:138,66:0.32:204
chr12	104985580	rs11112120	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr12	104985655	rs313323	C	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	104995800	rs5800627	A	AT	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.318;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr12	105260145	rs139689401	AAGAC	A	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.093;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	105260159	.	T	TAC	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.416;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	105260365	rs61036188	TAA	T	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.732;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.417;QD=14.41;ReadPosRankSum=0.323;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr12	105280236	rs12322073	A	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:90,37:0.29:127
chr12	105282699	rs139999568	GT	G	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	105322262	rs61745056	C	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.012;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr12	105371271	rs141533623	TG	T	5837.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	105380152	rs1129593	A	C	8108.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=3.080;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.113;QD=25.74;ReadPosRankSum=1.118;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,314:1.00:315
chr12	105380311	rs7964906	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr12	105388181	rs11112287	C	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	105418130	rs7303849	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	105418294	rs7304326	G	A	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	105425815	rs17036612	A	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	105432019	rs112805543	ATC	A	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-0.242;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:46,23:0.33:69
chr12	105432057	.	AACACAC	A,AAC	684.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;QD=38.04;SOR=3.383;set=HC	GT:AD:AF:DP	1/2:0,9,9:0.50,0.50:18
chr12	105433607	rs4964318	G	A	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	105434300	rs12297353	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr12	105444319	rs11112346	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:106,34:0.24:140
chr12	105444441	rs78226033	G	A	4642.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:99,219:0.69:318
chr12	105455651	rs6539183	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	105459258	rs138736198	T	TA	564.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	105477951	rs11112362	C	T	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr12	105478095	rs115423782	C	T	3907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=0.259;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:86,182:0.68:268
chr12	105478327	rs7303961	C	T	104.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	105504764	rs1196839	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	105508241	rs61418036	ACAT	A	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=0.616;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	105509160	rs1196801	G	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	105514480	rs1196837	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.041;QD=16.55;ReadPosRankSum=0.490;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	105514483	rs57967713	C	CGT	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.629;QD=8.68;ReadPosRankSum=-0.660;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	105527385	rs1211276	G	C	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	105527517	rs17036668	G	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,58:0.55:106
chr12	105533940	rs12309370	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	105534025	rs1196808	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	105536430	rs5800652	C	CTA	308.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=38.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	105538478	.	A	AT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-0.857;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:94,18:0.16:112
chr12	105538757	rs12425803	T	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	105540322	.	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=2.009;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr12	105540668	rs11112389	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=-1.006;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	105543326	rs1196802	T	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	105543641	rs7968154	A	G	183.03	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	105546172	rs1663564	G	A	7367.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	105546274	rs78263426	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr12	105546332	rs7315964	G	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr12	105558324	rs146551772	AAAT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.35;ReadPosRankSum=-0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr12	105568122	rs935241	G	A	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr12	105568176	rs935240	G	A	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	105568359	rs11112396	T	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr12	105568381	rs11112397	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	105570041	rs10861360	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	105570981	rs73179990	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:232,115:0.33:347
chr12	105582245	rs1196852	A	G	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:96,153:0.61:249
chr12	105583747	rs73179996	G	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:115,43:0.27:158
chr12	105591569	rs12303948	G	A	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:61,159:0.72:220
chr12	105591779	rs76502294	G	A	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr12	105597672	rs7300130	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr12	105600752	rs12311156	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr12	105629785	rs139867855	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr12	105629865	rs1196785	C	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	105724770	.	A	C	384.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr12	106461045	rs138538652	C	T	6262.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:163,293:0.64:456
chr12	106464785	rs4964437	G	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	106500158	rs35769739	GT	G	484.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.243;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	106500159	.	TTA	T	271.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.638;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:51,30:0.37:81
chr12	106641347	.	A	AGGC	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.170;QD=14.44;ReadPosRankSum=1.470;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr12	106641489	rs368519473	GGGC	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;QD=41.61;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	106647723	rs2704899	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr12	106647783	rs2704898	T	G	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	106647865	rs2704897	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.933;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:119,33:0.22:152
chr12	106704974	rs4964460	G	A	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	106706035	rs75541217	ATTTTTT	A	597.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=0.838;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr12	106708278	rs2253838	T	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr12	106717490	rs200010594	TTTAAA	T	236.75	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=33.82;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	106840195	.	CA	AA	46	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=19;HapScore=4;MGOF=45;MMLQ=7;MQ=58.55;NF=0,0;NR=3,9;PP=19,46;QD=17.9237375157;SC=CCTCTCCCCACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=3;TCR=14;TR=3,9;WE=106840203;WS=106840185;set=Platypus	GT:AD:AF:DP	0/1:14,3:0.18:17
chr12	106840195	.	CA	C	46	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=19;HapScore=4;MGOF=45;MMLQ=7;MQ=58.55;NF=0,0;NR=3,9;PP=19,46;QD=17.9237375157;SC=CCTCTCCCCACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=3;TCR=14;TR=3,9;WE=106840203;WS=106840185;set=Platypus	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	107002558	rs55993073	CT	C	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.656;QD=4.16;ReadPosRankSum=0.952;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:76,60:0.44:136
chr12	107002825	rs11113054	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr12	107033047	rs10861641	A	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr12	107078562	rs5800715	A	AAAG	6855.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	107083059	rs7961392	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:98,186:0.65:284
chr12	107090201	rs10778502	T	C	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.030;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:153,93:0.38:246
chr12	107144328	rs12424114	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.591;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr12	107395106	rs8192440	A	G	7688.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr12	107714310	rs11383016	T	TC	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr12	107914141	rs1861586	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	107914468	rs58769417	C	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr12	108003911	rs4964599	T	C	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	108034282	rs79676071	C	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=1.740;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:50,77:0.61:127
chr12	108035805	rs9919699	T	C	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:74,118:0.61:192
chr12	108035903	rs9919712	T	C	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:75,151:0.67:226
chr12	108043042	rs140918739	G	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr12	108045292	rs2241186	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	108045336	rs2241185	T	C	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:83,59:0.42:142
chr12	108045392	rs2241184	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:218,123:0.36:341
chr12	108096718	rs61730727	T	C	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:199,101:0.34:300
chr12	108134614	rs141958794	TTC	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-0.644;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	108136195	rs78015902	T	C	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:48,97:0.67:145
chr12	108136252	.	T	C	322.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	108140170	rs145422889	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.059;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:138,66:0.32:204
chr12	108140322	rs112419555	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=9.276;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=0.951;QD=2.24;ReadPosRankSum=-0.671;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	108145676	rs11830999	C	T	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:285,140:0.33:425
chr12	108169048	rs370244634	C	T	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:179,111:0.38:290
chr12	108600237	rs1106752	A	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:90,38:0.30:128
chr12	108626471	rs1365314	C	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:62,101:0.62:163
chr12	108675724	rs12816282	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:137,105:0.43:242
chr12	108686008	rs1057401	C	G	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:200,98:0.33:298
chr12	108687449	.	GAAA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=7.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=2.046;SOR=0.106;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr12	108912304	rs34353718	C	T	5057.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:654,303:0.32:957
chr12	108913027	rs73402740	G	A	7753.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:221,352:0.61:573
chr12	108918146	rs2303633	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr12	108923950	rs1549096	A	G	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.372;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:282,148:0.34:430
chr12	108924904	rs2287549	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:144,72:0.33:216
chr12	108929116	rs76315070	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr12	108929291	rs73402763	C	T	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:77,143:0.65:220
chr12	108929363	rs73402764	G	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr12	108931932	rs34601661	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:219,90:0.29:309
chr12	108932053	rs2287551	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	108932916	rs7133076	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr12	108936516	rs888556	T	G	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=1.208;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr12	108936519	rs888557	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=1.613;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr12	108943028	rs2052423	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.492;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr12	108954502	rs1160332	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr12	108954823	rs1063936	C	T	3505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.456;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:609,236:0.28:845
chr12	108956417	rs10778647	T	G	3290.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=45.71;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	108956417	.	TT	GG	1864	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=24;MQ=60.09;NF=35;NR=19;PP=1864;QD=35.5086643493;SC=GGCTGGGGCTTTCCGTCTGAG;SbPval=0.58;Source=Platypus;TC=55;TCF=35;TCR=20;TR=54;WE=108956426;WS=108956407;set=Platypus	GT:AD:AF:DP	1/1:1,54:0.98:55
chr12	108956418	rs10778648	T	G	3346.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.62;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	108956433	rs2287555	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr12	108956449	rs112552261	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,67:0.54:123
chr12	108956526	rs60547936	A	AG	6129.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	108956610	rs2287556	C	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:50,14:0.22:64
chr12	108961354	rs888547	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.829;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr12	108961383	rs888548	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-3.141;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr12	108962445	rs73404738	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr12	108985479	rs112991728	C	T	2844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.078;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:408,176:0.30:584
chr12	108985945	rs7975237	A	G	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr12	108986151	rs75619905	C	T	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:30,76:0.72:106
chr12	109016803	rs7311687	C	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr12	109017079	rs143398240	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:184,77:0.30:261
chr12	109017614	rs112473865	G	A	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:508,249:0.33:757
chr12	109017898	rs2228315	C	T	11116.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr12	109182049	rs3741778	T	C	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	109194449	rs3217206	TC	T	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	109201326	rs1549087	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr12	109211031	rs12316621	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr12	109217007	rs34849596	G	GT	497.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:66,22:0.25:88
chr12	109219903	rs6539455	C	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr12	109221013	rs10861970	C	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,53:0.35:153
chr12	109270506	rs7136681	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.465;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:87,24:0.22:111
chr12	109277492	rs11114083	C	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	109278747	rs2111902	T	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:302,119:0.28:421
chr12	109281310	rs7980427	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:289,113:0.28:402
chr12	109281432	.	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr12	109288202	rs75607844	A	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.941;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr12	109288295	rs76477430	T	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=0.327;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr12	109292643	rs150933922	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	109309424	rs4964773	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.372;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:152,32:0.17:184
chr12	109330915	rs10861986	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr12	109331162	rs3918305	C	T	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr12	109332630	rs140502266	C	A	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:103,166:0.62:269
chr12	109339023	rs36191519	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.440;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr12	109354632	rs36181716	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	109354843	rs36139385	G	A	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:130,222:0.63:352
chr12	109371381	rs149284306	C	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	109458471	rs114740125	G	T	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	109509385	rs368198239	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:156,56:0.26:212
chr12	109510086	rs111762860	G	GT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.809;QD=1.32;ReadPosRankSum=1.047;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:169,48:0.22:217
chr12	109511144	rs7967182	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	109511256	rs7967322	T	C	3437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=-0.164;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:54,156:0.74:210
chr12	109530278	rs145676752	G	GCA	3258.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:138,119:0.46:257
chr12	109547586	rs2878959	A	T	1347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=7.41;ReadPosRankSum=4.600;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:107,75:0.41:182
chr12	109577952	rs4766494	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr12	109625976	.	CTCCTTCCTTCCTTCCTTCCT	C,CTCCTTCCT	1064.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.95;SOR=6.593;set=HC	GT:AD:AF:DP	1/2:0,8,18:0.31,0.69:26
chr12	109635031	rs2268393	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.677;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:134,40:0.23:174
chr12	109635076	rs2268392	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr12	109637188	rs7299171	G	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:153,84:0.35:237
chr12	109639521	rs2284691	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr12	109644447	rs12818490	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.676;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr12	109660212	.	C	T	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.994;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr12	109670468	rs3742027	T	C	17121.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr12	109670657	rs3742026	G	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:19,76:0.80:95
chr12	109672951	rs7138373	T	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	109675029	rs2241220	T	C	12633.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr12	109680227	rs113341281	T	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:147,98:0.40:245
chr12	109683321	rs78791453	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr12	109683575	rs10744772	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr12	109683965	rs73398091	G	A	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:77,141:0.65:218
chr12	109684043	rs113691648	T	C	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:86,168:0.66:254
chr12	109685545	rs2284689	A	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	109687886	rs113576948	G	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr12	109691991	rs2075259	A	G	12595.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr12	109692053	rs17848835	C	T	7925.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:274,393:0.59:667
chr12	109696838	rs2075260	G	A	11085.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:292,528:0.64:820
chr12	109697796	rs2075261	A	G	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:58,91:0.61:149
chr12	109704177	rs2075262	G	A	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:38,103:0.73:141
chr12	109717820	rs75265740	G	A	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:61,118:0.66:179
chr12	109723079	.	TGC	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.77;ReadPosRankSum=0.126;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	109725392	rs73401949	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:47,115:0.71:162
chr12	109728175	rs11066130	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr12	109831344	.	T	TCATCCAACCATTCATCCATCCATCCATC	1270	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=27;MQ=62.49;NF=0;NR=13;PP=1270;QD=98.1538461538;SC=GTCCATCCATTCATCCATCCA;SbPval=1.0;Source=Platypus;TC=55;TCF=2;TCR=53;TR=13;WE=109831364;WS=109831334;set=Platypus	GT:AD:AF:DP	1/0:42,13:0.24:55
chr12	109831348	.	C	CCAACCATT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=5.673;MLEAC=1;MLEAF=0.500;MQ=62.89;MQRankSum=6.553;QD=1.75;ReadPosRankSum=3.707;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:76,10:0.12:86
chr12	109831356	.	C	CCATCCATCCATCCATCCATT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=5.673;MLEAC=1;MLEAF=0.500;MQ=62.51;MQRankSum=6.553;QD=2.21;ReadPosRankSum=4.732;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:76,10:0.12:86
chr12	109835590	rs11611358	A	G	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.245;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:271,121:0.31:392
chr12	109843594	rs9888353	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr12	109844432	rs11066505	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr12	109844702	rs12425103	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr12	109845778	rs75978659	C	CATT	2244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.655;QD=10.25;ReadPosRankSum=1.033;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:153,66:0.30:219
chr12	109848000	rs7967632	C	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.86;ReadPosRankSum=0.773;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	109848567	rs7315991	T	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	109849535	rs2196612	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.13;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	109849535	.	AACACA	GACACA,GACACG	408	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=27;MQ=60.0;NF=28,9;NR=3,1;PP=408,78;QD=14.2829423402;SC=TTAGAAGCCAAACACATGGAT;SbPval=0.58;Source=Platypus;TC=31;TCF=28;TCR=3;TR=31,10;WE=109849560;WS=109849525;set=Platypus	GT:AF:DP	0/1:1.00:31
chr12	109849540	rs7316486	A	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.850;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr12	109849552	rs5800859	C	CCT	2607.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	109853306	rs4766598	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.342;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr12	109858918	.	A	AT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.725;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr12	109859032	rs5800861	G	GC	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	109863721	rs67083809	TTC	T	889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.666;QD=7.94;ReadPosRankSum=1.673;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr12	109874230	rs2075432	A	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.060;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:197,50:0.20:247
chr12	109883254	rs3742020	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	109883374	rs3825393	T	C	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr12	109883577	rs7969719	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	109935889	rs149769171	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr12	109937534	rs7298565	G	A	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	109945218	rs74961634	A	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	109955708	rs10850308	A	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,63:0.64:99
chr12	109958955	rs61744991	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr12	109967576	rs184463990	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr12	109971481	rs12303137	C	G	10948.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr12	109994870	rs9593	A	T	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	109995097	rs888192	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	109999036	rs114996305	C	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:143,65:0.31:208
chr12	110002819	rs10850380	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	110004667	rs369454158	C	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr12	110004828	rs376366686	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:101,44:0.30:145
chr12	110004960	rs874170	C	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	110006512	rs11836136	A	G	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr12	110011229	rs10774774	GC	TT	9231.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	110012467	rs3759387	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	110012510	rs66616264	C	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	110014055	rs3752662	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	110016942	.	AT	A	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.808;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	110016947	rs7296044	T	A	285.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.649;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	110016948	.	T	A	248.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.839;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	110016952	rs10774779	T	A	282.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-0.761;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	110016953	.	T	A	245.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.506;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	110019409	rs188739897	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:252,129:0.34:381
chr12	110024541	rs2270375	A	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:197,81:0.29:278
chr12	110029320	.	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.073;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr12	110034458	rs188368642	G	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr12	110205775	rs116005734	A	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:108,62:0.36:170
chr12	110205831	rs61746553	A	G	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.668;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:324,178:0.35:502
chr12	110206778	rs61748987	G	C	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.901;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:314,100:0.24:414
chr12	110221631	rs10774894	G	C	5137.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:127,233:0.65:360
chr12	110226379	rs3742037	G	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:339,159:0.32:498
chr12	110230537	rs35078611	G	A	4974.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:149,237:0.61:386
chr12	110230712	rs56186049	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr12	110236379	rs148753109	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr12	110238265	rs16940583	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr12	110238481	rs1344554	G	A	12821.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:253,580:0.70:833
chr12	110238487	rs3742034	A	G	3795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.384;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:574,248:0.30:822
chr12	110240838	rs3825394	T	G	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	110252521	rs34599967	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.660;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:123,32:0.21:155
chr12	110293622	rs7298933	T	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.119;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	110293678	rs3782893	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	110296095	rs4766488	G	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	110296115	.	CTA	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.187;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	110341933	rs10774978	A	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	110342421	rs11068852	T	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.478;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr12	110342627	rs57860034	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr12	110344339	rs2271318	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.129;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	110344458	rs115143150	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr12	110344552	rs57957298	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr12	110345232	rs2271317	A	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.346;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr12	110345305	rs3830479	A	ACCT	1110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.444;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:93,33:0.26:126
chr12	110346787	rs1567471	T	A	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	110350734	rs115597143	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=1.378;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr12	110352361	rs16940680	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr12	110403264	rs10851035	C	G	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	110418635	rs7960775	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	110418724	rs80000006	G	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.862;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:161,55:0.25:216
chr12	110418891	rs56017297	A	C	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:154,73:0.32:227
chr12	110426798	rs61754619	G	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr12	110427301	rs2271321	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr12	110429632	rs16940760	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.120;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr12	110451180	rs115981662	A	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr12	110456175	rs2302689	A	G	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	110473899	rs113289184	GTGT	G	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr12	110486272	rs7137233	T	C	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	110489049	rs144417481	G	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:275,136:0.33:411
chr12	110489208	rs11064860	C	T	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:46,101:0.69:147
chr12	110495171	rs41436646	C	G	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	110503770	rs11829777	T	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	110573340	rs12300649	G	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	110574675	rs149943976	AATT	A	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr12	110618512	rs7299230	A	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	110770588	rs76395994	T	C	2830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.13;ReadPosRankSum=-0.779;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:56,78:0.58:134
chr12	110770597	rs80213036	A	G	2559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=-1.595;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:45,65:0.59:110
chr12	110770912	rs144655160	CG	C	2107.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	110777024	rs58483954	T	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	110778383	rs11065631	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr12	110783074	rs149324360	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:265,118:0.31:383
chr12	110819759	rs35699984	GA	G	48.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=-0.464;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	110825591	rs61754907	A	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:61,138:0.69:199
chr12	110826208	rs28569834	TC	GG	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	110826463	rs28670753	C	T	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	110874492	.	G	GAAAA	1262.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=37.14;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	110905869	rs7958683	G	A	5860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.256;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:723,353:0.33:1076
chr12	110906029	rs201009503	G	A	7765.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:158,353:0.69:511
chr12	110910780	.	CAA	C	455	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=20;HapScore=2;MGOF=9;MMLQ=16;MQ=58.4;NF=1;NR=3;PP=455;QD=114.5;SC=GACCCTGTCTCAAAAAAAAAA;SbPval=0.73;Source=Platypus;TC=7;TCF=2;TCR=5;TR=4;WE=110910789;WS=110910770;set=Platypus	GT:AD:AF:DP	1/1:3,4:0.57:7
chr12	110924566	rs370427865	AT	A	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr12	110931054	rs56017652	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=2.702;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr12	110937445	.	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.659;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr12	110939421	rs6606687	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:388,172:0.31:560
chr12	110941651	rs80248684	C	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:152,71:0.32:223
chr12	110946121	rs73191828	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:46,11:0.19:57
chr12	110950775	.	AT	A	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.166;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	110968180	rs149557420	TAATG	T	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	111054059	.	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.134;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	111100040	rs112306425	GA	G	30.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	111100627	rs73194012	T	C	2887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.304;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:269,164:0.38:433
chr12	111100677	rs73194013	T	C	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:113,83:0.42:196
chr12	111121119	rs1018134	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.265;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr12	111160003	rs1973505	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:337,157:0.32:494
chr12	111169832	rs77362774	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	111180318	rs180833148	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr12	111290871	rs886132	G	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:93,36:0.28:129
chr12	111291279	rs145388107	C	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr12	111321724	rs76024719	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	111331016	rs11065750	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	111342595	rs115635364	G	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr12	111350771	rs3825389	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	111351003	rs142220381	A	AG	18803.73	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:2,595:1.00:597
chr12	111351029	rs3833910	TC	T	20711.73	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:2,647:1.00:649
chr12	111351186	rs2071629	C	T	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	111351937	rs11065770	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:149,67:0.31:216
chr12	111351963	rs111836845	G	GAC	5917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.216;QD=17.66;ReadPosRankSum=0.958;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:52,283:0.84:335
chr12	111353320	rs3216888	GA	G	231.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	111353556	rs2301610	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	111357074	rs10849917	T	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	111651949	rs3825398	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	111651977	rs11451176	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=2.156;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr12	111655513	rs7962233	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.85;ReadPosRankSum=0.566;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	111701537	rs59303212	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:159,114:0.42:273
chr12	111742222	rs1362006	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr12	111748071	rs73418724	C	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:228,109:0.32:337
chr12	111758620	rs4766505	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr12	111776327	rs139870124	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,36:0.33:110
chr12	111785586	rs3803167	T	C	8066.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:195,374:0.66:569
chr12	111786082	rs6490073	G	C	15698.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr12	111799524	rs11576045	C	CTGT	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	111799681	rs874286	T	C	8850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.72;ReadPosRankSum=-1.430;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,356:0.99:358
chr12	111800826	rs139032867	TGCCACCCCC	T	3996.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,101:0.59:171
chr12	111856443	rs7963692	C	G	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-2.447;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:150,58:0.28:208
chr12	111856493	rs7972796	T	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-1.398;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:118,41:0.26:159
chr12	111856738	rs7973120	T	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	111872676	rs11065900	G	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:157,67:0.30:224
chr12	111884608	rs3184504	T	C	15286.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:1,595:1.00:596
chr12	111885351	rs111340708	ATGGGG	A	12152.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr12	111894072	rs2073950	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr12	111895203	rs2301622	C	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	111895209	rs12301585	A	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.952;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr12	111895272	rs2301621	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	111902410	rs12299425	C	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.344;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr12	111908682	rs11065916	C	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-2.112;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:131,38:0.22:169
chr12	111923466	rs10400565	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr12	111926255	rs78209549	T	G	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:63,122:0.66:185
chr12	111951375	rs16941540	T	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:63,41:0.39:104
chr12	111951497	rs59829184	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-0.792;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	111962924	rs7302641	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr12	111992031	.	T	TA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.660;QD=1.99;ReadPosRankSum=0.662;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr12	111992078	rs12315171	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-0.396;QD=3.44;ReadPosRankSum=-0.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	112019603	rs6490216	G	A	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:282,147:0.34:429
chr12	112036753	rs10560189	GGCT	G	1212.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:86,65:0.43:151
chr12	112036779	.	CTGT	C	465	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MMLQ=27;NF=7;NR=22;SC=GCTGCTGCTGCTGTTGCTGCT;SbPval=0.87;Source=Platypus;TC=70;TCF=24;TCR=46;TR=29;WE=112036790;WS=112036766;set=Platypus	GT:AD:AF:DP	1/0:41,29:0.41:70
chr12	112036782	rs76696028	T	C	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.647;QD=3.16;ReadPosRankSum=3.418;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:151,30:0.17:181
chr12	112036797	rs4098854	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:163,35:0.18:198
chr12	112082493	rs78238613	C	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	112087805	rs61739319	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,22:0.26:86
chr12	112098285	rs1419586	T	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr12	112103589	rs61999323	G	A	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:298,155:0.34:453
chr12	112117009	rs61308437	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:102,63:0.38:165
chr12	112121068	rs80229432	G	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:320,149:0.32:469
chr12	112130490	rs78909071	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr12	112130564	rs77123766	A	G	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:222,108:0.33:330
chr12	112130666	rs74762902	A	T	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:272,147:0.35:419
chr12	112147397	rs35276160	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:110,73:0.40:183
chr12	112147444	rs35753710	A	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:209,117:0.36:326
chr12	112153858	rs57721697	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	112165856	rs35358426	A	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.004;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:236,85:0.26:321
chr12	112167599	rs59844708	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:198,98:0.33:296
chr12	112171643	rs76918876	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.563;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr12	112171681	rs74669905	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.270;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr12	112174765	rs78112811	T	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.136;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:103,41:0.28:144
chr12	112174773	rs35716113	C	G	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.799;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:92,36:0.28:128
chr12	112174822	rs80351850	T	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr12	112184195	rs35354983	C	CT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=2.988;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	112186042	rs75138525	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr12	112187148	rs75655687	G	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:104,44:0.30:148
chr12	112191139	rs7956676	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	112191417	rs75822212	A	G	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:522,302:0.37:824
chr12	112191669	rs80294185	C	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:130,73:0.36:203
chr12	112194237	rs75289932	G	A	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:297,170:0.36:467
chr12	112194358	rs75604924	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,64:0.30:216
chr12	112194421	rs79779492	T	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:139,51:0.27:190
chr12	112222940	rs112230847	G	GC	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr12	112227797	rs77384237	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr12	112229081	rs74595229	C	T	1975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.390;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:300,129:0.30:429
chr12	112230015	rs75822349	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr12	112230036	rs4646777	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr12	112235783	rs4646778	C	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr12	112241472	rs111627571	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	112241552	rs2106696	T	A	1803.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.530;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=0.224;SOR=0.460;set=HC	GT:AD:AF:DP	1/1:7,84:0.92:91
chr12	112247532	rs58352818	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr12	112280773	rs3213628	G	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	112306495	rs34689630	G	GT	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	112306512	.	C	CT	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.546;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:33,51:0.61:84
chr12	112321322	rs75803132	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	112338539	rs3742000	T	C	12057.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr12	112338734	rs3832867	T	TA	18602.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:2,516:1.00:518
chr12	112338985	rs147114007	C	CACTT	8231.73	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:82,201:0.71:283
chr12	112339015	rs12321677	G	A	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	112375990	rs3752630	A	C	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	112403565	.	T	TA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.476;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr12	112416586	rs11066112	C	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	112416794	rs111436404	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr12	112429469	rs12423126	C	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	112441688	rs7313773	T	C	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.438;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr12	112443017	rs10849992	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.949;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr12	112450754	rs11066128	T	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.170;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr12	112459849	rs80350869	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:24,77:0.76:101
chr12	112471090	rs12298022	G	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr12	112478456	.	A	G	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	112481732	.	A	AT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.479;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	112530702	rs79624283	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr12	112572941	rs148107405	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr12	112579878	.	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=4.625;QD=0.23;ReadPosRankSum=0.321;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:158,29:0.16:187
chr12	112580071	rs7970397	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.035;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:172,71:0.29:243
chr12	112608312	rs3215348	TCCC	T	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr12	112621886	rs3741993	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.113;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr12	112638688	rs35054697	CGT	C	51.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.580;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr12	112638690	.	T	TGC	353.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr12	112657406	.	A	AT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=4.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=2.379;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr12	112667675	rs1005902	T	G	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	112668343	rs4767522	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	112685781	rs151176253	T	TAC	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.253;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr12	112708331	rs10850023	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr12	112712771	rs141512931	A	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr12	112843363	rs2301723	G	A	128.18	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	112843998	rs2233861	A	T	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	112888239	rs61736914	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:133,71:0.35:204
chr12	112915434	rs41279090	C	T	286.79	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr12	113269736	rs11829717	A	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:152,59:0.28:211
chr12	113312971	rs2189473	G	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:85,27:0.24:112
chr12	113313470	rs2891411	C	T	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:313,161:0.34:474
chr12	113317063	rs76342455	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,33:0.28:117
chr12	113319471	rs886476	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.542;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr12	113319600	rs2240194	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:149,67:0.31:216
chr12	113319778	rs10850088	G	A	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:335,153:0.31:488
chr12	113325460	rs7979186	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	113325629	rs4141253	T	C	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.634;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:278,114:0.29:392
chr12	113348870	rs1131454	G	A	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	113357193	rs10774671	G	A	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr12	113357209	rs1131476	G	A	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr12	113357237	rs1051042	G	C	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr12	113357442	rs2660	G	A	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	113369644	rs7968145	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.03;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	113369715	rs11352835	TA	T	5725.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	113369759	rs7967461	G	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	113376320	rs3815178	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	113376331	rs1859331	C	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	113376388	rs1859330	G	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	113376452	rs1859329	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	113376543	rs3038120	C	CCAAAGGG	5389.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	113379509	rs116951660	G	A	5724.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:112,265:0.70:377
chr12	113385918	rs7961861	C	T	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	113386616	rs34647135	T	C	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	113386950	rs2285932	T	C	7944.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	113387034	rs3214199	A	AG	2980.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:6,122:0.95:128
chr12	113398919	rs2072136	G	A	11386.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	113400824	rs113210418	CA	C	412.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	113400826	rs61942232	C	T	421.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	113405181	rs1557866	A	C	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	113416653	rs2384075	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr12	113425154	rs1293767	C	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	113435293	rs1293756	C	A	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	113435450	rs1293755	A	T	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	113444418	rs929291	T	C	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	113445768	rs1293746	G	A	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:62,107:0.63:169
chr12	113447199	rs34600329	GC	G	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	113448288	rs15895	A	G	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr12	113496313	rs1732785	C	T	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr12	113530845	rs3217697	C	CAG	4535.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	113530899	rs1628639	A	G	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	113531295	rs1625170	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	113531305	rs1674095	A	T	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.24;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	113531338	rs7954586	C	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr12	113533050	rs2243397	C	T	36812.77	.	AC=2;AF=1.00;AN=2;DB;DP=1376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,1367:1.00:1367
chr12	113533124	rs2243396	C	T	34103.77	.	AC=2;AF=1.00;AN=2;DB;DP=1282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,1271:1.00:1271
chr12	113539822	rs1674101	A	G	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	113541940	rs1613480	C	T	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:82,165:0.67:247
chr12	113544874	rs2468355	C	T	14591.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr12	113545393	rs736285	A	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	113553251	rs148454620	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	113553408	rs1284878	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	113553481	rs1284879	C	T	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	113559531	.	A	AT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-0.122;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr12	113565411	.	C	T	331.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:68,20:0.23:88
chr12	113566050	rs60280118	GAC	G	894.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=26.32;ReadPosRankSum=-2.259;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:4,30:0.88:34
chr12	113568797	rs7976407	A	G	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.781;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:93,53:0.36:146
chr12	113573237	rs7960087	C	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:166,91:0.35:257
chr12	113596736	rs2305901	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:104,65:0.38:169
chr12	113599866	rs61941433	T	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:123,81:0.40:204
chr12	113600654	rs58194620	CG	TA	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.019;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.162;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr12	113600903	rs61941434	A	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:223,134:0.38:357
chr12	113605672	rs113725144	T	TGGCCCTGGGCA	1977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.147;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:153,49:0.24:202
chr12	113607502	rs2384207	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	113607823	rs2305902	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr12	113610442	rs2305903	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr12	113612353	rs77548516	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:101,44:0.30:145
chr12	113614824	rs2305899	T	C	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:296,165:0.36:461
chr12	113617662	rs7309979	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.041;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	113716734	rs144760721	GGT	G	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=1.269;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:117,18:0.13:135
chr12	113756706	rs2288364	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr12	113770352	.	G	C	59.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr12	113796399	rs12825284	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.178;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr12	113796566	rs7965471	A	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.883;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:71,30:0.30:101
chr12	113810384	rs111547330	G	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr12	113818545	rs201187162	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr12	113818599	rs78496923	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:144,82:0.36:226
chr12	113818728	rs34831983	G	A	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:132,75:0.36:207
chr12	113818795	rs36019885	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr12	113826535	rs35106464	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr12	113863514	rs16942799	A	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:255,116:0.31:371
chr12	113863963	rs12831817	C	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.818;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:132,39:0.23:171
chr12	113866981	rs61753864	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,33:0.27:121
chr12	113874497	rs11833132	T	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr12	113874784	rs147732110	T	C	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.794;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:174,93:0.35:267
chr12	114261286	rs930004	T	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	114282496	rs2075387	C	T	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:101,165:0.62:266
chr12	114282678	rs2075386	G	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr12	114296522	rs112209023	C	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	114296745	rs10744803	C	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	114356357	rs10774721	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	114358581	rs112539928	G	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr12	114362483	rs3782456	C	T	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr12	114362621	rs1458713	A	G	9896.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr12	114362632	rs3782458	A	G	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.616;QD=4.18;ReadPosRankSum=-1.142;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:245,95:0.28:340
chr12	114362699	rs10774723	G	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:88,37:0.30:125
chr12	114377899	rs7299217	G	C	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	114379991	rs2290791	T	C	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr12	114383543	rs112209914	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	114383559	rs898081	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	114383800	rs2290792	T	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:45,88:0.66:133
chr12	114393028	rs1037747	C	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	114395571	rs2290786	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr12	114403807	rs55993817	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	114832510	rs2236017	C	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,61:0.64:95
chr12	115110253	rs11067230	G	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.417;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr12	115801070	rs1920947	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	115802115	.	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=7.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.720;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:102,24:0.19:126
chr12	116408538	rs2304460	A	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:24,68:0.74:92
chr12	116412921	rs1992068	AT	TC	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	116420448	rs56159580	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr12	116420478	.	CT	C	47	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=2;MGOF=21;MMLQ=21;MQ=60.0;NF=0;NR=3;PP=47;QD=30.0;SC=AACAAAAGGGCTCAATTCTAG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=3;WE=116420486;WS=116420468;set=Platypus	GT:AD:AF:DP	1/0:11,3:0.21:14
chr12	116429689	rs1865787	A	G	5520.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:146,254:0.64:400
chr12	116446445	rs3741768	C	T	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,116:0.64:180
chr12	116460307	rs11067880	A	G	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-3.612;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:161,93:0.37:254
chr12	116714815	.	A	AC	1706.73	.	AC=1;AF=0.500;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr12	116865973	rs114934033	C	T	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	116866112	rs202127912	CCA	C	413.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.853;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	116866113	rs370202370	CA	C	82.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.231;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr12	116866203	rs139053398	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	117013676	rs78152888	C	T	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.707;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:68,41:0.38:109
chr12	117013730	rs7303998	G	C	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:167,84:0.33:251
chr12	117186316	rs1532395	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	117187907	rs111256849	T	C	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:90,150:0.62:240
chr12	117217141	rs4767452	T	C	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	117271686	rs61737205	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:151,233:0.61:384
chr12	117287190	rs16947049	C	T	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:318,169:0.35:487
chr12	117290601	rs903772	T	C	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	117318899	rs12311393	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.209;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	117349014	rs11068230	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	117383320	rs4076700	G	A	1825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-1.478;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:17,84:0.83:101
chr12	117402755	rs6490101	T	C	180.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	117423264	rs7131746	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	117426564	.	G	T	3681.77	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:73,177:0.71:250
chr12	117465857	rs4529958	T	C	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr12	117465981	rs2291916	T	C	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr12	117484436	rs76346744	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:216,103:0.32:319
chr12	117486478	rs2291911	C	T	6917.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:202,329:0.62:531
chr12	117486642	rs2291910	T	A	7915.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:168,367:0.69:535
chr12	117494543	rs2173654	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr12	117593216	rs4767506	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	117593391	rs4767507	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,50:0.37:135
chr12	117595978	rs2279766	A	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	117624234	rs12309102	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:106,44:0.29:150
chr12	117624428	rs113571728	TCTCA	T	2060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.301;QD=27.85;ReadPosRankSum=1.320;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:21,53:0.72:74
chr12	117636074	rs112407951	A	AT	440.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-1.120;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr12	117636075	rs59514465	A	T	449.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-1.103;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr12	117646196	.	C	CGTGTGTGTGTGTGTGTGT	179.14	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.83;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	117653243	rs149003143	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.783;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr12	117660467	rs816363	C	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr12	117662712	rs2293046	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr12	117665544	rs904658	A	C	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,92:0.69:133
chr12	117669914	rs3741475	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=2.576;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	117672339	rs1875140	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr12	117672711	rs10588671	CTAT	C	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	117681353	rs34385734	A	ACCAT,ACCATCCATCCAT	782.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/2:0.44,0.56:18
chr12	117685399	rs9658463	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	117691727	rs2682822	T	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	117696164	rs1093329	G	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	117696421	rs2293053	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr12	117701714	rs2293054	A	G	11287.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr12	117710395	rs9658377	G	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr12	117715724	rs3215291	AC	A	3278.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	117718353	rs9658364	G	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	117718473	rs11282297	G	GGGTAAAA	9174.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	117724225	rs9658354	A	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	117728068	rs9658327	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:48,87:0.64:135
chr12	117768105	rs111326073	G	GCA,GCACA	1537.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=101;set=Intersection	GT:AF:DP	1/2:0.35,0.45:86
chr12	117905636	rs36058871	T	TA,TAA	1073.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=116;set=Intersection	GT:AF:DP	0/1:0.73:101
chr12	117905716	rs111919379	A	AGGGTTTCTG	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	117955801	rs16947663	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	117964997	rs139023603	G	A	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.728;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:195,76:0.28:271
chr12	117993064	rs7955803	C	T	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr12	118017201	rs4767569	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	118112020	rs75618425	T	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr12	118199286	rs617641	C	G	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	118455759	rs2393374	T	G	16940.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,670:1.00:670
chr12	118456825	rs5745811	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr12	118463653	.	CTT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.381;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	118464688	rs5745870	A	G	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr12	118465820	rs5745873	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:74,126:0.63:200
chr12	118467369	rs4766894	T	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	118467553	rs4767654	A	G	4488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.342;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=1.478;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:1,176:0.99:177
chr12	118467645	rs5745879	C	T	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.883;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:21,60:0.74:81
chr12	118480874	rs7312586	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr12	118506327	rs72125532	TTCCTCC	T	8239.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	118508796	rs7135008	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.983;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:95,40:0.30:135
chr12	118520170	rs7488309	G	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	118520240	rs6490164	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	118589069	rs2249624	G	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	118589092	rs140297022	GCGCA	G	667.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.885;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	118650917	rs353886	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	118673483	rs5801274	G	GA	440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.280;QD=8.81;ReadPosRankSum=-0.427;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr12	118681158	rs708862	T	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.093;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	118682751	rs428073	C	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:153,73:0.32:226
chr12	118828755	rs492939	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	119540062	rs73213729	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	119540203	rs73213730	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	119551975	rs67353211	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	119552016	rs67382838	C	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	119554751	rs73213764	C	G	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:53,94:0.64:147
chr12	119557940	rs73213768	C	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.633;SOR=1.815;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr12	119563064	rs7311828	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:87,47:0.35:134
chr12	119563084	rs7296134	C	G	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	119563288	rs34186549	A	AC	2043.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.746;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:235,95:0.29:330
chr12	119568421	rs7298308	C	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	119568596	rs7297606	G	A	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:140,265:0.65:405
chr12	119568670	rs7298583	C	A	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	119568691	rs4298970	A	G	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	119588871	rs368207573	T	G	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:249,122:0.33:371
chr12	119591176	rs34002484	A	AC	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	119592222	rs78132298	T	C	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:107,175:0.62:282
chr12	119773173	rs60178268	C	G	125.41	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	119871387	rs1716471	A	G	9937.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=0.761;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:4,395:0.99:399
chr12	119871493	rs1716470	G	A	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	119871533	rs1727388	T	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	119916818	rs16949241	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr12	119937983	rs482802	A	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	119957861	rs708884	T	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:109,166:0.60:275
chr12	119958068	rs573590	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	119960612	rs708887	G	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	119961503	rs116150853	C	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr12	119961587	rs78218795	G	A	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:62,140:0.69:202
chr12	119966250	rs3915269	G	C	313.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr12	119978404	rs708889	A	G	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,125:0.64:196
chr12	120067561	rs2301653	T	C	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr12	120106376	rs6490267	G	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	120114507	rs278149	G	T	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.249;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:181,59:0.25:240
chr12	120126074	rs10669112	A	AAGG	2751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=9.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.340;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:133,75:0.36:208
chr12	120135929	rs60831257	T	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	120137451	rs7301635	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	120138679	rs76850358	G	C	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:57,136:0.70:193
chr12	120139701	rs34140357	T	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-1.972;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:87,26:0.23:113
chr12	120142124	rs73412182	G	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.849;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	120145987	rs56158046	G	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	120146028	rs56303497	T	C	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:79,122:0.61:201
chr12	120146292	rs73412189	T	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	120149946	rs113303356	T	TA	3303.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	120150904	rs2285594	T	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	120151171	rs7136842	G	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	120151493	rs7311975	T	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	120158203	rs7299963	C	T	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	120166450	rs7311108	G	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:52,101:0.66:153
chr12	120166497	rs7311120	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr12	120171929	rs112783625	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,68:0.72:94
chr12	120171995	rs278109	T	C	10108.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	120180361	rs148885124	G	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.679;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr12	120189879	rs904655	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	120189888	rs904654	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.533;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr12	120190054	rs141931278	T	TGA	1037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.226;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr12	120190059	rs56336823	C	G	2001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.084;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:17,59:0.78:76
chr12	120199014	rs76924716	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	120270528	rs4767849	T	C	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr12	120528596	rs116616872	G	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr12	120536571	rs2239199	C	T	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr12	120536820	rs80127912	G	A	13924.77	.	AC=1;AF=0.500;AN=2;DB;DP=1064;set=Intersection	GT:AD:AF:DP	0/1:361,674:0.65:1035
chr12	120537042	rs7971249	C	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr12	120546145	rs7294975	C	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr12	120546378	rs78261210	C	T	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:130,186:0.59:316
chr12	120554520	rs17525453	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,50:0.82:61
chr12	120565954	rs115155492	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	120575549	rs3864938	A	C	13256.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	120580323	rs7300790	T	C	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-2.701;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:205,99:0.33:304
chr12	120580587	rs201796801	C	CA	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:170,69:0.29:239
chr12	120588852	rs4503602	A	G	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	120589064	rs2286045	G	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:134,100:0.43:234
chr12	120589160	rs2286046	A	G	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	120591251	rs10735071	C	T	10870.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr12	120594295	rs61750782	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr12	120601137	rs114377980	C	T	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:62,157:0.72:219
chr12	120606163	rs6490286	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	120628027	rs34357352	C	CA	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.002;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:56,46:0.45:102
chr12	120657778	rs77876183	G	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,56:0.30:185
chr12	120661444	rs59470045	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	120661977	rs4767884	T	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	120720038	rs7960743	T	C	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	120750239	rs2261612	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr12	120762649	rs9657935	A	T	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr12	120762765	rs5637	C	T	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.893;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:196,80:0.29:276
chr12	120783527	rs1076205	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-2.304;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:84,23:0.21:107
chr12	120783561	rs1076206	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=2.082;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr12	120791197	rs2285679	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr12	120794653	rs1179441	T	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.867;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:96,36:0.27:132
chr12	120796703	rs1179445	T	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr12	120800823	rs757123	A	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	120801064	.	G	GCC	28	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5009;HP=10;HapScore=2;MGOF=18;MMLQ=24;MQ=60.0;NF=0;NR=3;PP=28;QD=13.3333333333;SC=CTCTTTAAAGGCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=120801072;WS=120801054;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr12	120802750	rs7314042	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	120806129	rs111293994	C	CT	5084.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;QD=36.85;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	120806548	rs141027548	G	T	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr12	120897652	rs28390349	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	120897772	rs115350072	T	G	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:118,204:0.63:322
chr12	120903601	rs76732633	C	A	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.975;QD=9.56;ReadPosRankSum=-1.758;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:93,100:0.52:193
chr12	120942837	rs114398951	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.201;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:31,67:0.68:98
chr12	120947948	rs500003	G	A	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.27;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr12	120960057	rs503335	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:208,73:0.26:281
chr12	120972396	rs541126	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr12	120994932	rs7956998	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr12	120998481	rs787949	G	A	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	121003132	rs80072520	C	T	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr12	121004564	rs35710723	CA	C	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.728;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr12	121008958	rs2280168	G	A	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:102,166:0.62:268
chr12	121013412	rs74574163	C	T	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-1.197;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:67,63:0.48:130
chr12	121017171	rs7174	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr12	121017439	rs563920	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:51,83:0.62:134
chr12	121019323	rs591992	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	121093629	rs112935060	CGTGCGTGT	CGT,C	8736.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=330;set=Intersection	GT:AF:DP	1/1:0.99:279
chr12	121094110	rs569499	T	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	121097573	rs7302002	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr12	121097622	rs529584	G	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	121131891	rs2393749	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr12	121132100	rs7964786	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	121133037	rs504403	G	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	121154624	rs476676	T	G	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:109,206:0.65:315
chr12	121157604	rs75205937	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr12	121174765	rs112669327	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.180;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:127,41:0.24:168
chr12	121174899	rs3914	T	C	8823.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=3.018;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.72;ReadPosRankSum=0.913;SOR=0.116;set=HC	GT:AD:AF:DP	1/1:2,355:0.99:357
chr12	121175984	rs555404	T	C	8117.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,314:1.00:315
chr12	121176679	rs3915	C	T	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr12	121177272	rs3916	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr12	121202952	rs6490303	A	T	2483.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	121204368	rs3213571	G	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	121221518	rs60238091	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr12	121222469	rs3213569	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=2.225;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr12	121222496	rs3213568	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	121229225	rs77723057	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=-0.150;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	121248584	rs674021	G	A	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	121341849	rs2686458	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	121416622	rs1169289	C	G	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:199,137:0.41:336
chr12	121431272	rs2071190	T	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr12	121432302	rs1169302	T	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.060;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:67,29:0.30:96
chr12	121434630	rs55853809	C	CTCATTCAT	516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.600;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr12	121437221	rs1169304	T	C	4404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.916;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:578,269:0.32:847
chr12	121437382	rs1169305	A	G	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	121439598	rs11065390	G	A	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:387,170:0.31:557
chr12	121442199	rs3751151	T	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:137,60:0.30:197
chr12	121444026	.	G	GA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.050;QD=1.04;ReadPosRankSum=1.362;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr12	121450354	rs2264778	C	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr12	121450384	rs2254971	G	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr12	121454257	rs2258227	T	A	3959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-1.159;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:577,250:0.30:827
chr12	121454313	rs2258287	C	A	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:463,172:0.27:635
chr12	121465642	rs148081048	CAG	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.126;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr12	121471216	rs3213546	C	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.134;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr12	121593019	rs1718125	C	T	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	121593355	rs1653585	C	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	121594056	rs208290	G	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	121598565	rs1794887	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr12	121598652	rs1653583	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:186,95:0.34:281
chr12	121600180	rs208293	C	T	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	121600253	rs208294	T	C	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	121603053	rs208304	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	121603118	rs507085	T	C	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	121603122	rs654856	C	A	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	121603745	rs208306	T	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	121603825	rs36144485	ATGTT	A	4932.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	121603856	rs208307	C	G	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	121605599	rs686638	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	121613046	rs7137837	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.396;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	121613113	.	C	CAAAAAAAAAA	440.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;QD=44.07;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	121615103	rs1718119	G	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	121615283	rs1653598	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	121618141	rs2567998	A	C	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:70,145:0.67:215
chr12	121618257	rs10160951	C	G	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:140,63:0.31:203
chr12	121618278	rs112146943	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.847;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr12	121622023	rs1626329	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	121622520	rs1653624	A	T	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	121622563	rs1621388	G	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	121622675	rs2568004	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr12	121659999	rs1629287	G	A	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:114,236:0.67:350
chr12	121660787	rs25643	T	C	3952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.336;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:93,193:0.67:286
chr12	121666258	.	G	GTA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.19;ReadPosRankSum=0.566;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	121666341	.	CT	C	808.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr12	121678327	rs63023660	C	CTTT	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=1.316;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:27,45:0.62:72
chr12	121682051	rs2686340	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	121682480	rs111458893	C	A	3877.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:106,188:0.64:294
chr12	121683220	rs79110617	G	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	121686585	rs140028600	G	A	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:73,146:0.67:219
chr12	121690305	rs112943694	T	TCTGGTGATCCGC	681.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	121690454	rs76535668	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,104:0.66:157
chr12	121690548	rs2686344	T	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.33;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	121690555	rs2686345	T	C	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	121690587	rs1560568	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	121691096	rs1132780	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:120,77:0.39:197
chr12	121701438	rs75657508	G	GA	1247.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr12	121701681	rs2230776	G	A	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:111,172:0.61:283
chr12	121706533	rs1718120	T	G	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	121707321	rs1109453	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.466;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr12	121712077	rs3817190	T	A	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	121757660	rs2942064	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=2.109;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	121764799	rs4980993	A	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	121765100	rs116523210	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr12	121768248	rs2280067	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	121768302	.	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr12	121773216	rs11836319	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr12	121773552	rs3751162	T	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	121779733	rs10400545	A	G	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:147,186:0.56:333
chr12	121785795	rs1169961	C	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr12	121840634	rs11831315	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-1.357;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr12	121858208	rs3751135	A	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.439;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:90,28:0.24:118
chr12	121858212	rs3751134	G	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.580;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr12	121861424	rs28557279	C	A	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.751;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:559,203:0.27:762
chr12	121877562	rs7962571	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	121880885	rs3842645	T	TG	1220.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr12	121883027	rs7954896	C	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:245,102:0.29:347
chr12	121932576	rs74417208	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr12	121947730	rs78494968	G	A	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:245,116:0.32:361
chr12	121951009	rs115837423	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr12	122064627	.	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.09;ReadPosRankSum=-0.589;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	122064773	rs141919534	CCCGCCA	C	6431.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=1.578;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	122079189	rs3741595	C	T	13450.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:273,623:0.70:896
chr12	122079441	rs3825175	T	C	12638.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:345,602:0.64:947
chr12	122090601	rs374666846	C	T	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:117,228:0.66:345
chr12	122097043	.	GCA	G	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=4.496;QD=2.17;ReadPosRankSum=-0.488;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:116,28:0.19:144
chr12	122186268	rs28651018	C	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:195,86:0.31:281
chr12	122186317	rs28655666	G	A	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:216,102:0.32:318
chr12	122186362	rs116773485	A	G	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:87,190:0.69:277
chr12	122209613	rs11043192	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr12	122212525	rs11043195	C	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr12	122212553	rs78876707	C	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:40,119:0.75:159
chr12	122212659	rs11043196	C	T	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:96,209:0.69:305
chr12	122212752	rs7314742	G	T	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr12	122213144	rs73413708	G	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr12	122217856	rs59641582	G	GGT	1376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.974;QD=18.60;ReadPosRankSum=-0.390;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr12	122243595	.	A	AT	37	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5213;HP=16;HapScore=3;MGOF=13;MMLQ=20;MQ=60.0;NF=2;NR=2;PP=37;QD=10.0;SC=TCCAAAAAAAATTTTTTTTTT;SbPval=0.68;Source=Platypus;TC=8;TCF=4;TCR=4;TR=4;WE=122243603;WS=122243586;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	122246193	rs148236331	C	T	8160.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:217,391:0.64:608
chr12	122257890	rs11043202	G	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	122262948	rs74500679	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr12	122281575	rs1795963	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.604;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr12	122284715	rs2247291	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:98,58:0.37:156
chr12	122284936	rs114757207	C	T	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:644,304:0.32:948
chr12	122287132	rs3832816	CT	C	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	122294428	rs1154511	C	A	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:105,166:0.61:271
chr12	122295210	rs2707071	G	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:241,130:0.35:371
chr12	122295335	rs1154510	T	C	13799.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr12	122326812	rs2230681	T	C	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.596;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:170,73:0.30:243
chr12	122337399	rs1720069	G	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	122337698	rs1177573	C	T	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:144,254:0.64:398
chr12	122348746	rs4069666	A	G	7011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.314;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:198,332:0.63:530
chr12	122359172	rs6486782	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr12	122359397	rs142042908	G	GGAGGAGGAGGAGAAA	4221.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=52.77;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	122359698	rs10675519	C	CTT	148.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.59;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	122361929	rs34885077	CT	C	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	122389248	rs1185260	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	122391963	rs1154513	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	122392038	rs11043265	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:146,49:0.25:195
chr12	122396424	rs73415652	C	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.493;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:166,49:0.23:215
chr12	122409664	rs658957	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	122439369	rs1182927	T	C	8517.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	122460247	.	G	T	89.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.99;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	122473148	rs884785	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	122481641	rs111943468	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.336;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr12	122492598	rs2280573	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	122492789	rs143565565	C	G	6372.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:163,297:0.65:460
chr12	122611620	rs75503016	A	G	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	122611641	rs78324047	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	122612325	rs7488393	G	A	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	122612350	rs7486198	G	T	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	122612598	rs7484733	T	C	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	122612625	rs10847611	C	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.72;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	122612635	rs6489238	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	122613540	rs6489244	T	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	122613599	rs10847853	A	G	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	122614060	rs7487608	G	T	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.341;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:354,124:0.26:478
chr12	122614209	rs5801481	CT	C	13238.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	122614387	rs7487292	T	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	122615515	rs4758654	C	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:112,42:0.27:154
chr12	122618417	rs34702867	G	T	5094.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:646,302:0.32:948
chr12	122618752	.	G	GTTT	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=8.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.283;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	122625212	rs7488857	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	122658383	rs6489173	A	G	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	122668965	rs10847623	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	122674032	rs10847725	C	T	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	122674758	rs4758651	G	A	14181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=1018;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-1.148;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:346,656:0.65:1002
chr12	122674807	rs77473460	T	C	5087.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:567,299:0.35:866
chr12	122684966	rs11060679	G	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	122691058	rs35203505	T	C	24938.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=1008;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=0.895;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:4,989:1.00:993
chr12	122691738	rs4758675	C	A	16367.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr12	122692958	rs35426428	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	122694120	rs112684213	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	122694214	.	C	CA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.513;QD=0.53;ReadPosRankSum=-0.712;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:207,45:0.18:252
chr12	122694297	rs114271802	T	C	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:63,178:0.74:241
chr12	122701001	rs2271411	T	A	4715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.975;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.181;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.581;QD=20.15;ReadPosRankSum=0.165;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:17,217:0.93:234
chr12	122701203	rs7952820	G	T	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	122703014	rs7963565	C	T	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	122708996	rs80081594	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	122720292	rs77955945	C	A	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	122723317	.	TAC	T	378.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	122724296	.	CAAAAAAAA	C	332.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=30.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.77;SOR=4.796;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	122729375	rs56038133	A	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	122734427	rs34996966	T	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	122738097	.	CAA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.465;QD=5.67;ReadPosRankSum=2.374;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	122760929	.	C	CCACACACACACACACACACA	2337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=38.32;ReadPosRankSum=-0.380;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr12	122760953	rs7972227	G	A	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=37.18;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	122762604	rs2271409	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	122762763	rs3066171	G	GA	829.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.020;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,58:0.78:74
chr12	122763299	rs60258475	C	A	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	122817507	rs7956480	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr12	122826309	.	CTTTTTTTTTTTTTTTTTTTTT	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=20.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-0.168;SOR=4.163;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	122862560	rs55834409	C	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	122865029	rs1803290	T	C	5022.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:172,242:0.58:414
chr12	122958095	rs78310827	C	T	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr12	122962337	.	CA	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.155;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:56,25:0.31:81
chr12	122962730	rs112672020	GC	G	3239.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:52,92:0.64:144
chr12	122962859	.	G	GA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.665;QD=1.08;ReadPosRankSum=-1.231;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:132,30:0.19:162
chr12	122964708	rs10846978	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	122966016	rs57144421	T	TA	475.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.510;QD=14.87;ReadPosRankSum=-0.789;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:7,25:0.78:32
chr12	122966293	rs77652707	T	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	122966373	rs4758692	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	122974968	rs77001637	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	122983460	rs7314638	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	122991478	rs9988963	C	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	122993011	rs10773230	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr12	122995468	rs10709275	GA	G	1249.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	122999358	rs11322682	CA	C	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr12	122999535	rs6489056	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	122999827	rs77933700	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	123001737	rs57311174	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr12	123024332	rs35303600	C	CT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.026;QD=4.67;ReadPosRankSum=0.719;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr12	123026511	rs112539586	G	A	784.79	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr12	123028096	rs61956128	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr12	123030770	rs374749286	G	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr12	123030788	rs7968222	G	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr12	123031255	rs75052706	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=2.115;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr12	123031379	rs200482729	AT	A	107.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.47;ReadPosRankSum=-1.583;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr12	123031910	rs111807636	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr12	123060469	rs113639728	C	CT	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr12	123067634	rs7310271	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.063;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr12	123068810	rs78954544	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr12	123069590	rs111624734	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.710;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	123071365	rs7311684	AT	TA	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	123072480	rs144082040	CAG	C	1290.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr12	123079020	rs10847242	T	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.128;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr12	123079035	rs4319547	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	123087442	rs7307735	A	G	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	123097528	rs10744294	C	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr12	123103016	rs7301589	G	T	3840.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.556;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.761;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:36,191:0.84:227
chr12	123106375	rs12315377	G	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr12	123110654	rs3803005	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	123186596	rs76850512	C	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-4.503;QD=4.67;ReadPosRankSum=-0.416;SOR=2.110;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	123186610	rs76270247	GC	AG	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.187;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-3.172;QD=18.92;ReadPosRankSum=-2.857;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr12	123200099	rs61955034	T	C	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:47,128:0.73:175
chr12	123200247	rs56308926	G	C	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	123200334	rs116821988	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.114;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=33.798;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-5.917;QD=1.62;ReadPosRankSum=0.660;SOR=4.235;set=HC	GT:AD:AF:DP	0/1:123,21:0.15:144
chr12	123200693	rs17884481	A	G	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:55,195:0.78:250
chr12	123200768	rs1798192	T	G	6668.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:130,313:0.71:443
chr12	123200937	rs1696352	T	G	6807.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:154,312:0.67:466
chr12	123238189	.	TG	T	3652.73	.	AC=1;AF=0.500;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	0/1:92,129:0.58:221
chr12	123265952	rs1798563	A	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	123273206	rs7486414	G	A	167.28	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	123281967	rs10744394	G	A	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	123282811	rs76762460	C	T	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.494;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,52:0.52:100
chr12	123290951	rs34775544	GTT	G	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.568;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:84,37:0.31:121
chr12	123297718	rs4759391	T	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.032;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	123307755	rs2604851	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	123333065	rs2135014	C	T	1891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=2.137;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:314,126:0.29:440
chr12	123334539	rs59065210	C	T	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:118,180:0.60:298
chr12	123335279	.	C	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=5.032;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.032;QD=14.04;ReadPosRankSum=-2.958;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr12	123335287	rs12369846	A	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.063;QD=4.70;ReadPosRankSum=3.467;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr12	123335483	rs2271048	A	G	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.52;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	123335483	.	AGCCAG	GGCCAA,GGCCAG	728	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=27;MQ=60.0;NF=7,28;NR=9,42;PP=142,728;QD=12.2167421789;SC=ATGGCTACATAGCCAGTTCCC;SbPval=0.47;Source=Platypus;TC=70;TCF=28;TCR=42;TR=16,70;WE=123335496;WS=123335473;set=Platypus	GT:AF:DP	0/1:0.23:70
chr12	123335488	rs2271049	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.182;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:99,48:0.33:147
chr12	123335527	rs2271050	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr12	123339344	rs2292136	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr12	123339712	rs2292138	A	G	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:327,156:0.32:483
chr12	123340453	rs11418615	G	GC	1348.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr12	123341199	rs7972242	A	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,35:0.31:112
chr12	123341833	rs7138398	G	C	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.916;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:259,100:0.28:359
chr12	123341863	rs2343109	G	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.932;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:190,75:0.28:265
chr12	123342628	rs34131980	CCTCTT	C	2134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.442;QD=8.06;ReadPosRankSum=1.411;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:198,67:0.25:265
chr12	123342885	rs12313006	C	T	5162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.700;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:133,244:0.65:377
chr12	123343571	rs2343110	T	G	5815.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:348,168:0.33:516
chr12	123343572	rs5801491	G	GGC	2905.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:350,148:0.30:498
chr12	123344021	rs2271051	G	A	9145.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:218,434:0.67:652
chr12	123344910	rs937765	A	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	123345347	rs7306948	G	A	6139.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	123345360	rs7298176	T	C	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	123345736	rs10847910	C	G	6457.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:410,204:0.33:614
chr12	123345756	rs3215148	G	GC	6022.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.436;QD=11.34;ReadPosRankSum=-0.623;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:357,174:0.33:531
chr12	123352179	rs3825143	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr12	123352289	rs75507485	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	123352926	rs77133480	C	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	123373147	rs60009235	G	A	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:103,160:0.61:263
chr12	123409446	rs79976213	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr12	123416674	.	C	T	1917.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:28,86:0.75:114
chr12	123425576	.	G	A	7281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-3.325;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:219,352:0.62:571
chr12	123433137	rs10848106	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	123435248	rs11060946	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	123460823	rs883563	A	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr12	123461681	rs74377438	G	A	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:285,148:0.34:433
chr12	123465456	rs114587784	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.626;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr12	123465877	rs7966050	C	T	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	123466259	.	G	A	1797.77	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr12	123466304	rs74758272	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.92;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	123466720	rs112360219	C	A	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:52,106:0.67:158
chr12	123471402	rs2049506	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	123473254	rs1463877	T	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr12	123477311	rs937564	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	123479623	rs7968221	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	123485188	rs883263	A	G	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	123485562	rs116799934	G	A	4408.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:86,201:0.70:287
chr12	123491783	rs7313800	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.673;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr12	123495280	rs77905262	G	C	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	123645323	rs1260317	T	C	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	123679117	rs138791463	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr12	123679171	rs62772062	A	AT	323.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.706;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr12	123682630	rs72059632	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-1.326;QD=2.76;ReadPosRankSum=0.522;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	123699520	rs1727322	A	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr12	123707509	rs144990491	A	ATG	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr12	123711068	rs200868180	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.138;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	123712005	rs185289477	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:63,138:0.69:201
chr12	123749834	rs76783415	G	A	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.040;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:302,129:0.30:431
chr12	123794022	rs6488867	T	C	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	123799974	rs6488868	A	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:189,98:0.34:287
chr12	123801672	rs10846515	T	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:165,67:0.29:232
chr12	123801856	rs61751328	T	C	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.883;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:245,101:0.29:346
chr12	123810662	rs111400678	A	AC	3304.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=30.89;SOR=1.587;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	123811900	rs59707673	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.025;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	123812207	rs7959415	C	T	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	123812226	rs141165209	G	C	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:114,171:0.60:285
chr12	123812611	rs10846517	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	123813493	rs7301163	C	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	123815146	rs369148541	TA	T	193.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-0.537;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr12	123815668	rs6488869	A	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	123816007	rs11282939	T	TATGTTG	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr12	123816012	rs11402328	T	TG	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=7.824;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.851;SOR=0.087;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr12	123821234	rs7486223	T	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	123825339	rs7312145	A	G	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	123825389	rs7315453	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	123825559	rs12322888	C	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=0.536;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,47:0.76:62
chr12	123832710	rs11325003	TA	T	6193.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.96;QD=28.28;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	123832746	rs10846523	G	A	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	123875394	rs28660993	C	T	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	123881176	rs28372579	A	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr12	123907563	rs28625019	G	A	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:64,125:0.66:189
chr12	123907750	rs71085902	G	GT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.280;QD=7.19;ReadPosRankSum=0.596;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr12	123960444	rs375190049	ATTTTTT	A	650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.54;ReadPosRankSum=1.285;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	123960474	rs28971833	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr12	123983941	rs9697264	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:170,96:0.36:266
chr12	123984098	rs76019564	G	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:336,176:0.34:512
chr12	123997770	rs78426500	T	G	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.391;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:200,113:0.36:313
chr12	124008073	rs2292500	A	G	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	124017850	rs28492040	G	C	2804.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:312,162:0.34:474
chr12	124069111	rs71088937	GGGC	G	5077.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	124069213	rs786446	T	C	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	124071507	rs11289530	AT	A	2162.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr12	124075111	rs77895354	A	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr12	124081094	rs16917551	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.043;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr12	124086620	rs786427	G	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	124086656	rs113620982	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr12	124086998	rs786428	C	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.266;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr12	124090453	rs786436	A	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	124090605	rs4047521	ACT	A	1770.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr12	124090655	rs7973689	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr12	124097528	rs884892	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	124097766	rs11057306	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr12	124097824	rs3748268	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr12	124099704	rs35708602	G	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.64;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	124099704	.	GACTCTAAGC	CACTCTAAGA,CACTCTAAGC	471	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=17,22;NR=6,7;PP=471,53;QD=22.802951081;SC=AGTGGCCAATGACTCTAAGCC;SbPval=0.5;Source=Platypus;TC=29;TCF=22;TCR=7;TR=23,29;WE=124099721;WS=124099694;set=Platypus	GT:AF:DP	0/1:0.79:29
chr12	124099713	rs114627783	C	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=1.628;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr12	124099925	rs3748269	T	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	124101041	rs56675602	T	G	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr12	124101347	rs6488883	G	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	124102433	rs113768780	CGTTTTCAGATAGAATGCCTA	C	4034.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:2,97:0.98:99
chr12	124102801	rs113971302	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	124102871	rs68163141	T	C	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	124102889	rs7139162	C	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.70;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	124102893	rs71458808	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=1.300;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:77,51:0.40:128
chr12	124102920	rs34514002	T	C	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	124103060	rs12829500	A	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr12	124104049	rs15587	A	G	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	124104460	rs7302183	C	G	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	124104686	rs3204541	G	A	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr12	124111062	rs79606093	C	A	3494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.613;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:94,165:0.64:259
chr12	124111723	rs7298287	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr12	124116808	rs7301031	C	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.755;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	124116833	rs7300147	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-1.192;SOR=0.133;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr12	124118248	rs34827093	C	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr12	124118489	rs7294420	A	C	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr12	124124445	rs11572934	C	CGTGT	14876.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	124129924	rs11057315	C	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr12	124130128	rs2292702	T	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:65,93:0.59:158
chr12	124139597	rs4930737	A	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.186;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:79,37:0.32:116
chr12	124144395	rs1051793	A	G	16192.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:1,649:1.00:650
chr12	124144793	rs6488889	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr12	124155693	rs7980060	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-2.595;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:81,32:0.28:113
chr12	124156762	rs7134863	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr12	124156897	rs7306549	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	124158080	rs7978447	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	124171323	rs7297576	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	124171658	rs7309528	C	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	124172555	rs7298831	A	T	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	124172731	rs7313032	G	A	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=40.76;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	124172746	rs7302449	T	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=45.27;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	124172778	rs7302458	T	A	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;QD=26.69;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr12	124177016	rs35946281	C	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	124177289	rs7137946	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	124179417	rs7966867	T	C	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	124179620	rs12828633	G	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	124179739	rs12831081	A	G	241.18	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr12	124180011	rs11834492	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	124181049	rs7298440	C	T	11678.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr12	124181820	rs7979528	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	124197099	rs1139320	C	T	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	124197280	rs66647364	A	C	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr12	124228625	rs77220701	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	124229429	rs7135542	T	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:109,197:0.64:306
chr12	124241591	rs56862679	T	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,87:0.75:116
chr12	124242458	rs370511382	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=2.936;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	124256000	rs77056995	T	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	124256087	rs74853207	C	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:156,73:0.32:229
chr12	124265528	rs76149376	G	T	454.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr12	124265687	rs11057353	T	C	5598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.001;QD=14.07;ReadPosRankSum=1.258;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:132,266:0.67:398
chr12	124267638	rs11057354	A	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	124267703	rs11057355	T	C	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	124268458	rs7303002	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	124270467	rs116310078	C	T	6034.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:155,278:0.64:433
chr12	124274474	rs10846559	A	G	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	124274758	rs35056478	C	CT	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	124281322	rs76791219	T	C	9365.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	124281419	rs368845242	AT	A	284.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.548;QD=9.82;ReadPosRankSum=0.145;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr12	124288212	rs80041527	C	T	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	124288264	rs77491573	G	A	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr12	124297653	rs75275217	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr12	124315342	rs376586194	AT	A	31.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.166;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr12	124315343	rs7976816	T	A	101.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.256;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr12	124319864	rs4930730	T	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	124323011	rs116167096	T	C	5000.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:87,227:0.72:314
chr12	124325977	rs4930729	T	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr12	124330106	rs114910324	C	T	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,87:0.71:122
chr12	124330189	rs7969440	C	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.584;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:140,47:0.25:187
chr12	124330542	rs7969937	C	A	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:320,176:0.35:496
chr12	124332480	rs10610984	CAT	C	5269.73	.	AC=1;AF=0.500;AN=2;DB;DP=492;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:331,156:0.32:487
chr12	124343619	.	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	0/1:147,71:0.33:218
chr12	124350360	rs7313897	G	C	279.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr12	124350444	rs7314963	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr12	124350704	rs10773043	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	124352338	rs10846565	T	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	124360117	rs10846567	G	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	124362256	rs113178558	T	TG	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.422;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr12	124363724	rs72053758	GTGTC	G	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=41.41;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	124364131	rs1317312	G	C	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.807;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:14,61:0.81:75
chr12	124366150	rs34756279	CT	C	1300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.011;QD=8.73;ReadPosRankSum=-1.151;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:54,95:0.64:149
chr12	124377814	rs6488908	A	G	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.016;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:50,80:0.62:130
chr12	124377992	rs114772660	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	124379239	rs115841994	A	G	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-0.997;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:86,130:0.60:216
chr12	124383044	rs12306328	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	124387432	rs79858624	C	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.206;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:14,35:0.71:49
chr12	124387574	rs58411567	G	A	4383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=-0.919;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:94,129:0.58:223
chr12	124387586	rs61587964	A	G	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:95,139:0.59:234
chr12	124387669	rs75558206	C	T	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:98,147:0.60:245
chr12	124393076	rs74624536	T	G	5965.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:107,266:0.71:373
chr12	124393117	rs78985577	G	A	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:36,122:0.77:158
chr12	124398843	rs113172657	A	ACTG	7546.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:103,187:0.64:290
chr12	124399155	rs79478560	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr12	124399550	rs1316952	T	C	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:67,152:0.69:219
chr12	124401117	rs61749063	C	T	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.582;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:77,112:0.59:189
chr12	124401172	rs61740383	G	A	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.508;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:62,79:0.56:141
chr12	124408244	rs75587926	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr12	124408255	rs76233642	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr12	124409442	rs77322427	G	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	124409502	rs7133378	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr12	124409570	rs77377783	A	C	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=1.647;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:50,82:0.62:132
chr12	124409630	rs74845458	G	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:55,116:0.68:171
chr12	124412881	rs78688187	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr12	124414365	rs60560821	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr12	124419841	rs141503125	CCT	C	2580.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr12	124420076	rs113646068	C	CAGGA	1326.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	124427846	rs58157153	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr12	124798855	rs11832313	G	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:665,263:0.28:928
chr12	124799387	rs904647	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr12	124810174	rs10846657	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr12	124810968	rs1006100	C	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:46,98:0.68:144
chr12	124824721	rs143952466	C	CGCCGCTGCT	2889.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr12	124825447	rs1702334	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	124829234	rs1263992	C	T	5507.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:54,141:0.72:195
chr12	124829255	rs1244085	A	G	6052.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:74,169:0.70:243
chr12	124832474	rs1244065	G	A	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:78,129:0.62:207
chr12	124832492	rs1244064	C	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:74,118:0.61:192
chr12	124832606	rs1244063	A	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr12	124838772	rs1244082	C	G	5574.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:184,266:0.59:450
chr12	124838897	rs1244081	A	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:61,117:0.66:178
chr12	124839317	rs2271140	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr12	124839867	rs870050	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr12	124848137	rs1794956	T	C	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr12	124856660	rs3741513	T	A	10782.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:248,491:0.66:739
chr12	124857234	rs1702329	C	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr12	124862769	rs3741515	G	T	5573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-3.023;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:158,260:0.62:418
chr12	124873411	.	TGAGG	T	662	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=24;MQ=59.46;NF=3;NR=14;PP=662;QD=39.4117647059;SC=CGTCCCACGGTGAGGGAGGGA;SbPval=0.21;Source=Platypus;TC=54;TCF=5;TCR=49;TR=17;WE=124873422;WS=124873401;set=Platypus	GT:AD:AF:DP	1/0:37,17:0.31:54
chr12	124882890	.	C	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=31;QD=21.9237375157;SC=ACGCCCCTCCCCAGCCAGTAC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=3;WE=124882898;WS=124882880;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	124907237	rs144997959	CA	C	1158.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr12	124911063	rs113909706	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.401;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr12	124911129	rs73225425	G	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-0.888;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr12	124934459	rs1147284	C	G	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	124950851	rs185219012	C	T	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr12	124968349	rs747443	T	C	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.666;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:143,63:0.31:206
chr12	125263204	rs701104	A	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	125267151	rs75446635	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.894;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr12	125270773	rs2293440	A	G	5384.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:155,256:0.62:411
chr12	125279821	rs10396210	C	T	7372.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:163,347:0.68:510
chr12	125284748	rs5888	A	G	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	125323611	rs114069652	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:111,63:0.36:174
chr12	125324787	rs60430451	T	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr12	125348204	rs10396208	G	A	7815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-0.822;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:623,427:0.41:1050
chr12	125396165	.	T	TAAAA	721.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.10;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	125398039	rs1071862	G	C	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:289,165:0.36:454
chr12	125400030	rs75888447	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr12	125400206	rs6488957	A	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	125432602	rs73419476	C	T	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:200,344:0.63:544
chr12	125434434	rs4562928	C	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	125434580	rs4447263	C	T	5952.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:169,279:0.62:448
chr12	125436850	rs4375522	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr12	125436897	rs4502074	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,109:0.69:158
chr12	125437019	rs4429156	T	C	7161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.008;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:199,349:0.64:548
chr12	125437159	rs77441495	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:63,93:0.60:156
chr12	125437236	rs6488960	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr12	125438414	rs12367953	A	G	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=10.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.355;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:34,56:0.62:90
chr12	125438516	rs4516060	T	C	8683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=-0.457;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:143,217:0.60:360
chr12	125438523	rs4258464	C	T	9058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=-0.558;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:151,239:0.61:390
chr12	125438549	rs4606565	A	G	6059.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:157,279:0.64:436
chr12	125438616	rs11831506	A	C	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:329,192:0.37:521
chr12	125441359	rs10773127	T	C	8462.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr12	125441733	rs73421416	C	T	5655.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:142,262:0.65:404
chr12	125441856	rs11057932	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	125444975	rs4765007	T	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	125445124	rs73229559	G	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	125448960	rs4076777	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:109,55:0.34:164
chr12	125449470	rs73229567	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:169,72:0.30:241
chr12	125450416	rs73229568	G	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,72:0.35:204
chr12	125451277	rs56213993	T	C	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,97:0.66:146
chr12	125451767	rs60252902	G	A	8046.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:186,384:0.67:570
chr12	125453232	rs10773130	A	G	10414.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	125453235	rs11057940	C	A	10351.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	125456004	rs4542508	C	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	125456911	rs6488966	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	125457151	rs12320413	T	C	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	125465269	rs376470858	ACTC	A	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.004;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:189,19:0.09:208
chr12	125466987	rs11057949	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.761;QD=5.30;ReadPosRankSum=-0.929;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr12	125470628	rs116601214	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr12	125473393	rs75096926	G	A	5618.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:142,264:0.65:406
chr12	125473658	rs182839832	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	125509502	rs7303493	C	T	5035.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:161,241:0.60:402
chr12	125562809	rs7303092	G	A	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	125587478	.	G	GA	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.465;QD=2.91;ReadPosRankSum=0.727;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:120,48:0.29:168
chr12	125619308	rs2291248	C	T	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.254;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:245,99:0.29:344
chr12	125810958	rs551601	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	125811056	rs550677	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	125899979	rs379676	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr12	126003890	rs964997	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr12	126003934	rs964998	T	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	126068417	rs6489006	T	C	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	126128871	rs12305906	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	126135195	rs3803152	A	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	126137060	rs61021440	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-4.786;QD=0.41;ReadPosRankSum=0.284;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:130,22:0.14:152
chr12	126932564	rs6489085	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr12	126932764	rs758565	C	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	126942474	rs7966758	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	126942598	rs7967773	C	T	10324.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	126942675	rs7967011	G	A	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	126947430	rs1019149	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.141;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr12	126950164	rs11058670	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr12	127229218	rs57922573	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.499;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	127229254	rs10847207	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr12	127229506	rs10847208	T	C	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	128108780	rs3803151	T	C	1799.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.198;MLEAC=2;MLEAF=1.000;MQ=55.30;MQRankSum=-0.748;QD=25.35;ReadPosRankSum=-0.767;SOR=0.405;set=HC	GT:AD:AF:DP	1/1:1,70:0.99:71
chr12	128899673	rs11059681	A	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:213,97:0.31:310
chr12	128900005	rs1683723	G	A	11283.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:261,532:0.67:793
chr12	129028708	rs11610490	G	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.98;ReadPosRankSum=1.744;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	129028712	rs12812251	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.98;ReadPosRankSum=0.207;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr12	129153986	rs4272850	G	A	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:74,140:0.65:214
chr12	129181625	rs902058	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	129181701	rs902059	A	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	129181810	rs885546	A	G	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:63,142:0.69:205
chr12	129181834	rs902060	A	G	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	129189591	rs4533104	A	G	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	129189850	rs7959567	C	T	10322.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	129190021	rs11059841	A	G	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr12	129190717	rs55760351	C	T	10771.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:3,423:0.99:426
chr12	129278864	rs1059312	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr12	129283711	rs2291350	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	129293267	rs7311875	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	129298468	rs10688448	C	CAATA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.98;ReadPosRankSum=1.158;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	129298564	rs73149855	G	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr12	129298779	.	C	CGTATGATGGACCTGACCGCT	4029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DP=646;ExcessHet=3.0103;FS=11.083;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-1.034;QD=6.97;ReadPosRankSum=6.022;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:433,145:0.25:578
chr12	129298819	rs3741614	C	T	8090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=0.350;QD=13.95;ReadPosRankSum=1.160;SOR=1.490;set=HC	GT:AD:AF:DP	0/1:274,306:0.53:580
chr12	129299675	rs2306683	C	G	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.013;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:28,43:0.61:71
chr12	129338293	rs10847702	A	T	211.10	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr12	129348899	rs715804	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	129360331	rs12818190	G	A	192.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.30;ReadPosRankSum=0.674;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr12	129360498	rs482401	G	A	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=0.197;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:54,73:0.57:127
chr12	129383717	rs66757130	GTTTC	G	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	129383723	rs188637203	T	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	129397089	.	AAT	A	61	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=61;QD=36.0;SC=ATATGTGATAAATATATATAT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=129397098;WS=129397079;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr12	129410738	.	CAATAAT	C	710.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	129411117	rs11609238	A	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr12	129559557	rs10773594	C	T	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	129563020	rs2002553	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	129566270	rs12578725	A	C	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-2.515;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:22,67:0.75:89
chr12	129566284	.	ATT	A,AT	1325.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.609;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.551;SOR=0.321;set=HC	GT:AD:AF:DP	1/2:18,34,61:0.30,0.54:113
chr12	129566406	rs79031518	C	T	8759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=14.53;ReadPosRankSum=-0.354;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:190,413:0.68:603
chr12	129694276	rs11060203	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=9.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.162;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	130015535	rs71082733	G	GAA	1202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-0.411;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:9,66:0.88:75
chr12	130015828	.	G	C	185.78	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	130387637	.	C	G	754.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr12	130521184	rs611963	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=0.290;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	130521207	rs622000	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr12	130521234	rs34472041	C	CAAA	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-1.055;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	130521306	rs600949	G	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:48,87:0.64:135
chr12	130839645	rs1874521	A	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr12	130847389	rs2242363	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,71:0.35:203
chr12	130883554	rs79117967	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.755;QD=1.67;ReadPosRankSum=0.984;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:127,47:0.27:174
chr12	130890647	.	A	C	165.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr12	130916685	rs7966010	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	130934982	.	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr12	130935710	rs2398519	C	G	9279.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.83;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	130935710	.	CCCCGGCA	GCCCGGCA,GCCCGGCG	1313	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=24;MQ=60.0;NF=81,53;NR=50,32;PP=645,1313;QD=5.18909322555;SC=GCACAGGCAGCCCCGGCAGCC;SbPval=0.52;Source=Platypus;TC=133;TCF=82;TCR=51;TR=131,85;WE=130935725;WS=130935700;set=Platypus	GT:AF:DP	0/1:0.98:133
chr12	130935717	rs138464832	A	G	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.610;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:97,174:0.64:271
chr12	131276448	rs4759786	G	T	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:96,213:0.69:309
chr12	131280752	rs34749116	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,83:0.70:118
chr12	131285631	rs116366254	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr12	131285663	rs1881060	T	C	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,89:0.74:121
chr12	131293371	rs112721535	A	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	131296880	rs7961690	G	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr12	131323708	rs10848214	T	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,71:0.77:92
chr12	131453378	rs7309920	T	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.193;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr12	131453699	rs7307135	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr12	131466562	rs4759534	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr12	131471608	rs1547577	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.609;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:118,31:0.21:149
chr12	131476665	rs55788836	CAAA	C,CA	1069.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.871;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.10;ReadPosRankSum=1.238;SOR=1.342;set=HC	GT:AD:AF:DP	1/2:10,21,25:0.38,0.45:56
chr12	131485014	rs4759821	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr12	131485025	rs4759822	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	131488566	rs10773836	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.255;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr12	131488858	rs12311722	T	C	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.732;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:422,151:0.26:573
chr12	131490413	rs7978321	A	G	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.564;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:151,55:0.27:206
chr12	131498802	rs78638447	T	G	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=3.757;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:466,145:0.24:611
chr12	131498946	rs1212936	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.121;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:172,56:0.25:228
chr12	131555329	rs10744491	C	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-1.670;QD=1.39;ReadPosRankSum=0.091;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:138,29:0.17:167
chr12	131569234	rs2293656	G	A	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.745;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:324,114:0.26:438
chr12	131602811	rs7961434	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.264;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.062;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr12	131687218	rs73478573	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.756;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr12	131687287	rs7486559	G	C	13306.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	131692116	rs11061381	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-5.355;QD=0.42;ReadPosRankSum=2.941;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:134,19:0.12:153
chr12	132237848	rs1982528	T	C	25635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=1535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=0.648;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:348,1169:0.77:1517
chr12	132239754	rs61942900	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr12	132240937	rs3217666	C	CAT	1761.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr12	132241229	rs7136191	A	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	132269780	rs147508108	AACTG	A	12474.73	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:139,309:0.69:448
chr12	132269830	rs66665803	G	GA	5427.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	132271113	rs7136643	T	C	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	132283801	rs77439309	G	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr12	132283858	rs7967723	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:119,63:0.35:182
chr12	132284053	rs7967932	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:209,82:0.28:291
chr12	132313098	.	G	GGCTGCCGCT	1038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.10;ReadPosRankSum=2.232;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr12	132323089	rs7965611	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	132335592	rs11835665	G	A	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=1.683;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:421,161:0.28:582
chr12	132393541	rs12311271	G	A	8995.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:170,415:0.71:585
chr12	132394692	rs61942432	C	T	4772.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:58,183:0.76:241
chr12	132395052	rs7295593	G	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=1.388;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr12	132396343	rs11615995	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:48,12:0.20:60
chr12	132396603	rs11616018	C	T	1704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.955;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:370,124:0.25:494
chr12	132396679	rs12317065	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:16,86:0.84:102
chr12	132398248	.	A	C	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=55.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=5.570;SOR=2.945;set=HC	GT:AD:AF:DP	0/1:93,110:0.54:203
chr12	132398255	rs68126752	AC	A	796.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=3.945;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:127,78:0.38:205
chr12	132398256	rs4964880	C	A	1162.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-3.983;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:125,84:0.40:209
chr12	132400309	rs4964879	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr12	132401566	rs11546871	C	T	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=2.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.598;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:342,113:0.25:455
chr12	132401647	.	G	A	1665.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.29;ReadPosRankSum=3.354;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:4,51:0.93:55
chr12	132401649	.	CG	C	1656.73	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.48;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	132402020	rs4964918	T	C	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	132403161	rs11609348	A	G	16347.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr12	132404212	rs7299195	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	132406275	rs7311029	A	C	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	132406666	rs7138581	G	C	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:43,137:0.76:180
chr12	132427909	rs7961398	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	132448288	rs73162974	C	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	132498260	rs11831366	T	C	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	132505556	rs7305807	A	G	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	132508389	rs7133119	A	G	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr12	132514288	rs58319354	C	G	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	132514490	rs7315548	C	T	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:3,253:0.99:256
chr12	132537576	rs6422000	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	132547068	rs60930033	G	GGCA	6767.73	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:73,282:0.79:355
chr12	132547090	rs7974276	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.567;QD=0.15;ReadPosRankSum=3.338;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:446,47:0.10:493
chr12	132547096	rs74479394	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.638;QD=0.77;ReadPosRankSum=3.667;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:456,61:0.12:517
chr12	132547162	rs55938102	G	A	20531.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:1,769:1.00:770
chr12	132549300	rs7136109	A	G	23584.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	1/1:2,918:1.00:920
chr12	132560957	rs11833839	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr12	132561987	rs12311898	C	T	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr12	132562275	rs11246914	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	132562291	rs12317704	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	132588733	rs61744086	G	A	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr12	132589649	rs34521142	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	132598995	rs7136649	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr12	132625105	rs9788169	G	A	16589.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:2,637:1.00:639
chr12	132625643	rs57037358	C	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	132626191	rs1133694	C	T	10356.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	132626425	rs60927391	G	A	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	132633458	.	G	A	2433	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=46;MMLQ=24;MQ=59.02;NF=48;NR=72;PP=2433;QD=20.5647601046;SC=CCGCCGCCTCGCTCACACCAC;SbPval=0.59;Source=Platypus;TC=180;TCF=74;TCR=106;TR=120;WE=132633466;WS=132633448;set=Platypus	GT:AD:AF:DP	1/0:60,120:0.67:180
chr12	132633502	rs372537206	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=39.94;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	132633502	.	ACTCCT	GCTCAC,GCTCAT	728	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=41;MMLQ=24;MQ=55.95;NF=8,13;NR=27,48;PP=728,420;QD=22.6133678532;SC=CCGCCGCCTCACTCCTACCAC;SbPval=0.72;Source=Platypus;TC=75;TCF=20;TCR=55;TR=35,61;WE=132633515;WS=132633492;set=Platypus	GT:AF:DP	0/1:0.47:75
chr12	132633506	rs76606798	C	A	1821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;MQRankSum=-0.190;QD=45.54;ReadPosRankSum=1.728;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr12	132635521	rs7397057	T	C	9688.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr12	132635989	rs11246947	A	G	10653.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr12	132636334	.	G	A	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.082;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:196,59:0.23:255
chr12	132682481	rs12308155	T	G	18134.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr12	132682484	rs12306514	A	G	18061.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr12	132683632	rs4074045	A	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	132683862	rs6598205	G	A	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	132683961	rs6598206	T	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	132685940	rs61329617	A	AGGCCCCATCC	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	132839121	rs59683276	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:99,120:0.55:219
chr12	132839220	rs76360375	A	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr12	132839246	rs113109922	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr12	132839265	rs28431148	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr12	132852952	rs57184674	G	A	12530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.161;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:341,320:0.48:661
chr12	132852957	rs28561974	C	A	12525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=0.394;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:350,333:0.49:683
chr12	132854005	rs73473507	G	A	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:155,159:0.51:314
chr12	132911861	rs28672358	G	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr12	132911948	rs28722154	T	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-2.361;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	132919689	rs199591166	ATG	A	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	133031898	rs10870487	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	133032047	.	T	TGTGTGCATGTTGAC,TGTGTGTGCATGTTGAC	4977.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;QD=39.82;SOR=1.311;set=HC	GT:AD:AF:DP	1/2:0,64,61:0.51,0.49:125
chr12	133032110	rs9706362	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	133032132	rs113386371	C	CGT	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	133067343	.	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=53.10;MQRankSum=1.060;QD=6.21;ReadPosRankSum=0.507;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	133084973	rs61952075	G	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	133102350	rs61744287	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:122,105:0.46:227
chr12	133102462	rs4883569	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr12	133104406	rs7135930	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.671;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	133104461	rs4883566	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.576;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133104735	rs4883565	T	C	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=9.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.071;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:70,77:0.52:147
chr12	133146416	rs7312710	A	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.135;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	133146457	rs3751316	G	A	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.481;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:53,56:0.51:109
chr12	133147142	rs3751313	A	G	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.581;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:59,59:0.50:118
chr12	133153281	rs10870473	A	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr12	133153568	rs112141303	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	133158632	rs3751304	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	133159004	rs7308900	C	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.792;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr12	133159509	rs115330683	G	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.90;ReadPosRankSum=0.889;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	133159733	rs11550079	C	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	133160238	rs7966712	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	133160468	rs1133733	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	133181399	rs11146963	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:233,169:0.42:402
chr12	133181425	rs11146964	A	G	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:237,193:0.45:430
chr12	133182818	rs12819734	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,98:0.50:197
chr12	133195579	rs200710959	CGCGGGGCGCGGGGT	C	2562.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	133195625	rs11146976	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	133196596	rs7964634	T	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:93,77:0.45:170
chr12	133196733	rs7955816	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr12	133196773	rs7964872	T	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr12	133197018	rs6560891	G	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:124,124:0.50:248
chr12	133198021	rs4883632	C	T	7559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.649;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:491,392:0.44:883
chr12	133201947	rs4883544	T	C	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:226,198:0.47:424
chr12	133202004	rs4883543	C	T	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:181,137:0.43:318
chr12	133202215	rs5745075	G	A	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:91,96:0.51:187
chr12	133202428	rs5745073	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	133208883	rs5745024	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.44;ReadPosRankSum=-2.019;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	133208886	rs5745023	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	133208979	rs5745022	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr12	133210985	rs5745005	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	133212692	rs4883625	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	133212737	rs4883624	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	133214517	rs5744975	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.289;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.644;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	133214522	rs5744974	G	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.045;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	133214596	rs5744973	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,65:0.42:154
chr12	133214768	rs5744970	A	G	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	133218724	rs5744951	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	133219831	rs5744944	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	133220321	rs4883614	T	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	133220652	rs5744932	A	AG	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	133220670	rs10870483	G	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	133225446	rs4883538	G	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr12	133225714	rs5744902	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	133226159	rs4883613	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	133226196	rs4883537	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	133233705	rs5744889	T	C	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	133234389	rs5744884	CAT	C	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	133234741	rs10649524	C	CGTGT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	133236000	rs5744857	C	T	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	133238076	rs5744844	T	C	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.044;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:69,57:0.45:126
chr12	133240782	rs4883592	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	133241063	rs5744833	C	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:106,116:0.52:222
chr12	133242140	rs4883586	A	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=-0.281;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr12	133245149	rs5744798	A	G	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	133249139	rs5744780	T	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr12	133249753	rs5744777	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr12	133250118	rs4883555	C	T	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr12	133250143	rs5744775	G	A	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:115,150:0.57:265
chr12	133252556	rs4883545	T	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	133252796	rs4077170	C	G	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr12	133253310	rs5744757	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	133254083	rs5744750	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:120,86:0.42:206
chr12	133263743	.	A	C	31	.	AC=2;AF=1.00;AN=2;BRF=0.09;FR=1.0000;HP=2;HapScore=2;MGOF=1;MMLQ=18;MQ=60.0;NF=3;NR=0;PP=31;QD=21.9237375157;SC=GGCTGCGGGAACCGGGCCTCC;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=133263751;WS=133263733;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	133272380	rs10781627	G	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	133272521	rs76434782	T	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:109,90:0.45:199
chr12	133277716	rs113822946	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr12	133277983	rs7958567	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	133281461	rs11835147	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr12	133287721	rs7973452	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.061;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	133294231	rs11147013	G	T	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr12	133294769	rs75652705	A	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.808;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr12	133295131	.	TGTCCTGGGTGGGGTGCGTGCTGGGTGGGGGGTCCTGGGTGGGGTGCGTGCTGGGTGGGGGTGTCCTGGGTGGGGTGCGTGCTGGGTGGGGG	T	2979.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.055;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=3.354;QD=12.52;ReadPosRankSum=2.444;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:142,96:0.40:238
chr12	133295382	rs17855393	C	G	5008.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:251,257:0.51:508
chr12	133295501	rs11147015	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr12	133297103	rs10781631	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	133297171	rs113852527	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr12	133297182	rs10870498	A	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr12	133304146	rs10437912	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.12;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	133304149	rs10437913	G	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.14;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	133304604	rs11147024	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr12	133304891	rs10870499	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	133306237	.	G	C	155	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=2;MGOF=99;MMLQ=15;MQ=58.52;NF=9;NR=4;PP=155;QD=14.5977855806;SC=GGGAAGGAAAGTGAGTGCAGA;SbPval=0.7;Source=Platypus;TC=20;TCF=13;TCR=7;TR=13;WE=133306245;WS=133306227;set=Platypus	GT:AD:AF:DP	1/0:7,13:0.65:20
chr12	133306780	rs11545751	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr12	133306920	.	CCCATCCATGACCAACTGCCGTGACCCCAGCAACAGCAACTCTTATACCCAAAACCTCCCCACT	C	481.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.90;ReadPosRankSum=-0.936;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	133306927	.	AT	GC	365	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=24;MQ=59.55;NF=3;NR=8;PP=365;QD=38.0425340784;SC=CGCCCCATCCATGACCAACTG;SbPval=0.72;Source=Platypus;TC=22;TCF=7;TCR=15;TR=11;WE=133306936;WS=133306917;set=Platypus	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	133306944	.	CCCCAGCAACAGCAA	C	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-2.800;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr12	133306946	.	C	T	104	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=2;MGOF=25;MMLQ=27;MQ=59.42;NF=3;NR=5;PP=104;QD=17.3464015684;SC=TGCCGTGACCCCAGCAACAGC;SbPval=0.43;Source=Platypus;TC=17;TCF=5;TCR=12;TR=8;WE=133306954;WS=133306936;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	133306960	.	TCTTATACCCAAAACCTCCCCACTCCATCCGCGACCAACTGCCGTGACCC	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-2.317;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr12	133310659	rs372085055	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.663;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr12	133311888	rs10781636	C	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr12	133311944	rs10747081	T	C	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	133312191	rs10781637	T	C	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	133313337	rs10870504	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	133313372	rs7313956	C	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr12	133318100	rs7136759	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr12	133327470	rs7304425	A	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	133331459	rs7968520	G	C	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	133331640	rs370811042	G	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:147,87:0.37:234
chr12	133349620	rs3741483	C	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr12	133349893	rs3741484	A	G	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.52;ReadPosRankSum=0.296;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	133350952	rs73487160	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	133353168	.	C	T	340	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=1;HapScore=2;MGOF=8;MMLQ=27;MQ=56.99;NF=15;NR=1;PP=340;QD=23.4232007842;SC=GCCCCTCCAGCTCCTTCCTCC;SbPval=0.61;Source=Platypus;TC=17;TCF=16;TCR=1;TR=16;WE=133353176;WS=133353166;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr12	133353190	.	G	A	143	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=5;HapScore=2;MGOF=14;MMLQ=27;MQ=58.77;NF=8;NR=0;PP=143;QD=22.2214015684;SC=TGCTGCTCCCGCCTGTGCCCA;SbPval=1.0;Source=Platypus;TC=25;TCF=22;TCR=3;TR=8;WE=133353198;WS=133353180;set=Platypus	GT:AD:AF:DP	1/0:17,8:0.32:25
chr12	133353539	rs61951323	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr12	133353682	rs61951347	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:86,112:0.57:198
chr12	133354470	rs900444	T	C	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:109,131:0.55:240
chr12	133360527	rs58212274	C	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.767;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	133360530	rs11147073	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.56;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	133360964	rs1009320	G	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	133363264	rs2242294	C	T	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr12	133363376	rs7976379	G	T	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	133365497	rs968522	A	C	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	133365920	rs11147076	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	133365934	rs201418691	TG	T	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr12	133372395	rs4758905	A	C	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	133378244	rs149456851	AC	A	1523.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=0.253;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:14,88:0.86:102
chr12	133378440	rs2291258	C	T	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	133383923	rs10781653	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	133384809	rs7299219	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:127,113:0.47:240
chr12	133385188	rs3741488	A	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	133398439	rs66472368	CA	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=11.435;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.673;QD=2.78;ReadPosRankSum=0.942;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:67,49:0.42:116
chr12	133420533	.	C	CA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.154;QD=0.49;ReadPosRankSum=-1.625;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr12	133423866	rs10747087	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	133428032	rs2062161	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	133430078	rs374006779	G	A	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-1.511;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:53,41:0.44:94
chr12	133433173	rs2062163	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	133435638	rs11147112	G	A	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.234;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:133,94:0.41:227
chr12	133437979	rs11147113	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=1.393;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr12	133439115	rs9943858	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	133454354	.	T	TA	688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.715;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:31,42:0.58:73
chr12	133682655	rs710945	A	G	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	133683280	rs905225	A	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	133696743	rs144074942	G	GAAC	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	133696785	rs11147239	C	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	133697760	rs7953400	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	133721407	rs12310822	C	A	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	133732512	rs11147259	A	G	2779.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.17;ReadPosRankSum=3.111;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:2,113:0.98:115
chr12	133732624	rs3763151	C	T	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	133761207	rs137892024	ATTTG	A	318.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=39.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	133767966	rs11147291	C	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	133768273	rs10870589	G	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	133768693	rs67529736	CT	C	34.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=-1.855;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	133770306	rs7960924	C	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	133778684	rs7963812	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	133778796	rs7975069	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133796017	rs142568621	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr12	133796033	rs36130280	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	133797649	rs147515371	T	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	19751544	rs2297224	C	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr13	19756026	rs783595	C	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	19775652	rs66950030	CA	C	73.82	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	19775755	rs115152530	A	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.96;QD=25.53;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	19775867	rs114445450	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=41.70;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	19775875	rs138429293	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.48;QD=43.39;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	19778601	rs141790008	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	19782646	rs9512066	G	A	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.85;QD=24.93;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	19801420	rs9551255	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	19931495	rs113883205	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.20;QD=31.15;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	19931579	rs61956074	G	A	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	19931686	rs17080489	T	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	19933448	rs61956080	G	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	19933518	rs61956081	T	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	19941233	rs3002090	C	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	19943770	rs4112696	A	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=24.68;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	19961851	rs79520815	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-2.056;QD=2.16;ReadPosRankSum=0.993;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr13	20000613	rs76654056	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=9.717;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-4.484;QD=2.24;ReadPosRankSum=-8.868;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:285,44:0.13:329
chr13	20000614	rs77380319	T	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.815;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=11.726;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-5.467;QD=2.32;ReadPosRankSum=-7.536;SOR=1.635;set=HC	GT:AD:AF:DP	0/1:284,34:0.11:318
chr13	20000621	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.581;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=11.163;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-7.411;QD=0.12;ReadPosRankSum=-4.642;SOR=2.548;set=HC	GT:AD:AF:DP	0/1:247,8:0.03:255
chr13	20000630	rs2497218	T	C	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=25.80;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr13	20000702	rs4408395	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	20004798	rs2497068	C	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	20038584	rs7339103	A	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=25.15;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	20039289	rs2497079	A	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	20039722	rs115288312	A	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	20041563	rs2492391	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	20066994	rs78472618	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:83,24:0.22:107
chr13	20067011	rs76437836	A	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:94,44:0.32:138
chr13	20067081	rs76668072	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr13	20240743	rs9508812	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	20244960	rs3052670	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.70;ReadPosRankSum=0.188;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr13	20247171	rs4769866	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	20247238	rs10531847	GTT	G	2290.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.68;MQRankSum=0.653;QD=25.45;ReadPosRankSum=0.956;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:5,85:0.94:90
chr13	20251791	rs2290810	T	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	20251855	.	C	CG	4771.73	.	AC=2;AF=1.00;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	20252093	rs9508836	G	A	110.94	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr13	20277188	rs140475170	CA	C	69.14	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr13	20277413	rs75085951	T	C	5684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=49.24;MQRankSum=-8.345;QD=9.15;ReadPosRankSum=3.198;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:319,302:0.49:621
chr13	20356941	rs9508887	T	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	20398669	rs9508907	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	20398742	rs9508908	C	T	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	20600927	rs138849093	T	TA	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	20601532	rs148238464	G	GCTTTAT	540.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	20608318	rs259806	T	A	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	20608354	rs11272380	T	TTTTCTTGAGGTG	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	20608465	rs79833154	T	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	20608560	rs1543536	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	20610839	rs144794743	GT	G	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	20633470	rs11432433	T	TA	92.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.57;ReadPosRankSum=0.489;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr13	20638490	rs259785	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	20716411	rs11617415	C	T	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	20716533	rs968566	G	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	20762956	rs3751385	A	G	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	20987261	.	C	T	633.77	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	21006475	rs7983215	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	21013667	.	A	G	166.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=5.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=2.303;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr13	21013668	rs71774667	AAG	A	127.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=3.711;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr13	21086599	rs7139733	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	21099828	rs9315667	A	C	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	21170193	rs149283826	G	GTAAAA	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	21173826	rs2497475	G	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	21189941	rs2442455	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	21205046	rs2497489	T	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	21212739	rs34800529	C	CT	145.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	21237413	rs17055251	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	21306140	rs35948132	A	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	21331904	rs6490614	A	C	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	21416945	rs2762995	G	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	21437050	rs187834826	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	21549384	rs55869942	G	A	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr13	21555544	rs870846	CT	GA	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	21562317	rs61749292	G	A	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr13	21562832	rs2770928	C	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	21562948	rs558614	G	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	21620085	rs7317471	T	C	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr13	21721220	rs3742222	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	21729064	rs9552370	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	21729952	rs11446085	T	TA	345.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-2.001;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr13	21732094	rs4770121	C	T	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	21736133	rs4561294	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	21746453	rs2026600	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	21751005	rs9550717	G	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	21951016	rs9509669	A	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	21952907	.	CAA	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.385;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr13	22096843	rs1200028	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	22140911	rs66467009	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.096;QD=2.43;ReadPosRankSum=0.953;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr13	22178308	rs2761924	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	22275394	rs9509841	A	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr13	22275583	rs9509842	G	A	8012.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	23251016	rs35856253	CT	C	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	23253313	rs9506904	T	C	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	23279254	rs314874	G	A	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	23279279	rs314873	T	C	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr13	23853547	rs35628352	C	T	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr13	23898454	rs9510700	C	T	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	23898664	rs1800354	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	23905253	rs11554397	G	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	23907677	rs2737701	C	T	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr13	23907710	rs35670472	A	G	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr13	23910488	rs140034972	A	G	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr13	23915919	.	C	CT	27	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=0.9998;HP=22;HapScore=2;MGOF=15;MMLQ=15;MQ=54.01;NF=0;NR=3;PP=27;QD=10.0;SC=CTGGAAGGTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=23915927;WS=23915909;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr13	23985417	rs17078721	A	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	24164216	.	G	A	77	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=2;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=77;QD=27.9428031368;SC=GTAAGTGGTAGATATTATATA;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=24164224;WS=24164210;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	24164515	rs7318172	T	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	24167505	rs9550987	T	A	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	24234517	rs3751364	A	G	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr13	24242801	rs7329483	A	G	977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.090;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=-0.281;SOR=0.115;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr13	24243200	rs3751363	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	24410278	rs7982516	G	A	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	24411772	rs7333040	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	24436230	rs1886972	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	24449166	rs10595689	AACACAC	AAC,A	182.87	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=5;set=Intersection	GT:AF:DP	1/1:1.00:5
chr13	24465743	rs3864971	A	G	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	24466302	.	A	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=22;MQ=56.3;NF=0;NR=5;PP=20;QD=10.9542425094;SC=ACAAAGTAGTACACAGGTTCA;SbPval=1.0;Source=Platypus;TC=25;TCF=6;TCR=19;TR=5;WE=24466310;WS=24466292;set=Platypus	GT:AD:AF:DP	0/1:20,5:0.20:25
chr13	24798120	rs1220547	T	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	24798763	rs79540826	C	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	24826051	rs2793491	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr13	24845130	rs376881335	CCT	C	47.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,6:0.13:47
chr13	24853011	.	T	TTTCC	247.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=41.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	24865057	rs12430530	A	G	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	24869025	rs7993660	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	24890157	rs1974332	C	T	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	24890228	rs4275724	A	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.42;QD=27.58;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	24895102	rs4476017	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.80;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	24895684	rs2862239	A	G	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr13	24895928	rs111232315	G	A	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	25000617	rs7571	C	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	25008588	rs1372085	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25008630	rs1822135	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	25008903	rs9318536	G	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.26;QD=27.22;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	25009099	rs9511259	A	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	25009297	rs1050112	G	T	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr13	25009441	rs13428	C	G	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	25009485	rs1050110	C	G	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	25015967	rs61614647	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	25016008	rs59195808	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	25016092	rs55888616	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.76;QD=24.91;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	25016142	rs56259964	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=23.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	25016163	rs56092924	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.21;QD=24.44;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	25016202	rs57197471	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.15;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	25016585	rs3816226	G	A	162.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.30;ReadPosRankSum=-0.000;SOR=2.526;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr13	25016598	rs3816225	A	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	25016620	rs3816224	C	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	25016632	rs3816223	T	C	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	25016677	rs3816222	T	C	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	25016687	rs4770683	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	25016870	rs3816221	C	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	25020757	rs9511273	T	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25020782	rs9318553	C	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.84;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	25020863	rs9318554	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=24.76;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	25020910	rs9507346	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=24.95;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	25021144	rs78060735	GTCT	G	3252.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	25021200	rs9318558	A	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	25021211	rs7333856	C	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	25021245	rs7334587	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	25052393	rs79107024	G	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-7.384;QD=1.76;ReadPosRankSum=1.865;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:95,24:0.20:119
chr13	25052423	rs200378131	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-5.749;QD=1.85;ReadPosRankSum=-5.870;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr13	25073399	rs34014909	G	GT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.570;QD=1.84;ReadPosRankSum=-0.198;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr13	25263299	rs2070810	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	25264629	rs112189083	C	A	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	25264644	rs111714785	T	A	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	25265008	rs7986008	T	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	25272870	rs2289901	C	T	9873.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr13	25338586	rs9578783	A	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	25355965	rs5802305	GT	G	264.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.497;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr13	25356053	rs9707144	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	25363776	rs6490979	C	T	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	25367301	rs1158061	C	T	14029.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr13	25370255	rs1446294	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	25376420	rs1026014	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	25399752	rs2121253	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	25400338	rs12869348	A	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	25404743	rs4769382	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	25417795	rs34260997	TATC	T	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=40.90;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	25419176	rs6490984	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	25442921	rs2275938	A	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	25448120	rs8001764	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	25457207	rs9318911	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25458232	rs34991318	AGTT	A	2438.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	25458267	rs3831371	G	GAATT	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	25458650	rs1530876	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	25460428	rs9511502	A	G	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	25466774	rs9318917	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	25466955	rs3742165	T	C	3904.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.547;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.245;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=0.777;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr13	25486287	rs2290276	C	T	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	25670767	rs79159999	A	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-5.035;QD=1.17;ReadPosRankSum=-0.233;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:58,7:0.11:65
chr13	25670776	rs78432860	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-4.816;QD=2.10;ReadPosRankSum=0.980;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:53,7:0.12:60
chr13	25670777	rs76472384	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-4.905;QD=1.93;ReadPosRankSum=1.291;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:55,7:0.11:62
chr13	25670780	rs79494472	C	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-4.278;QD=1.31;ReadPosRankSum=0.509;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr13	25670797	rs75760907	C	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-3.970;QD=4.31;ReadPosRankSum=0.719;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr13	25670801	.	T	TG	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=7.975;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-4.153;QD=6.02;ReadPosRankSum=-0.387;SOR=1.899;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr13	25670803	rs76858651	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.383;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-3.970;QD=6.78;ReadPosRankSum=-0.650;SOR=1.722;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr13	25670813	rs3002212	C	T	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-3.918;QD=6.42;ReadPosRankSum=-1.262;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr13	25670851	rs75475407	A	G	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-6.402;QD=8.34;ReadPosRankSum=0.408;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:101,35:0.26:136
chr13	25670868	rs200859889	G	A	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-6.754;QD=7.02;ReadPosRankSum=0.983;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:122,36:0.23:158
chr13	25670873	rs77142265	A	G	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-7.391;QD=6.85;ReadPosRankSum=0.920;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:132,38:0.22:170
chr13	25670877	rs112107735	G	A	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-7.418;QD=6.82;ReadPosRankSum=0.738;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:133,38:0.22:171
chr13	25670907	rs76264750	C	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-7.641;QD=6.72;ReadPosRankSum=-0.128;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:135,39:0.22:174
chr13	25670919	rs76861216	A	G	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-8.008;QD=6.67;ReadPosRankSum=-0.231;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:134,39:0.23:173
chr13	25670953	rs74040928	G	A	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-10.069;QD=6.44;ReadPosRankSum=1.623;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr13	25670953	.	GCC	ACT	775	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=1;MGOF=41;MMLQ=27;MQ=57.98;NF=14;NR=14;PP=775;QD=29.5881383879;SC=GATGATGAGCGCCTTAAGGAT;SbPval=0.52;Source=Platypus;TC=93;TCF=48;TCR=45;TR=28;WE=25670963;WS=25670943;set=Platypus	GT:AD:AF:DP	1/0:65,28:0.30:93
chr13	25670955	rs79397892	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-9.999;QD=6.48;ReadPosRankSum=1.546;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:126,35:0.22:161
chr13	25670978	.	C	T	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-9.651;QD=7.05;ReadPosRankSum=0.813;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:128,38:0.23:166
chr13	25670981	rs77476965	G	C	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-9.287;QD=7.63;ReadPosRankSum=0.010;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:121,39:0.24:160
chr13	25670984	rs11619791	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.486;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-9.096;QD=7.36;ReadPosRankSum=0.991;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:125,36:0.22:161
chr13	25670988	rs74564616	T	G	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-8.650;QD=7.00;ReadPosRankSum=1.634;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:127,34:0.21:161
chr13	25671008	rs76447065	C	T	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-8.055;QD=6.74;ReadPosRankSum=0.844;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:131,33:0.20:164
chr13	25671015	rs75314628	A	G	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-7.582;QD=6.43;ReadPosRankSum=0.081;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:133,35:0.21:168
chr13	25671027	rs78826513	A	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.783;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-6.613;QD=5.00;ReadPosRankSum=-0.369;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:137,33:0.19:170
chr13	25671080	rs76241879	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=4.035;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-9.642;QD=0.81;ReadPosRankSum=-0.710;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:215,24:0.10:239
chr13	25671089	rs75281454	G	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-7.554;QD=0.54;ReadPosRankSum=-0.483;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:228,21:0.08:249
chr13	25671097	rs140090397	A	AT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-7.116;QD=0.37;ReadPosRankSum=-0.881;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:235,20:0.08:255
chr13	25671271	rs79246694	A	G	1039.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.955;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-8.260;QD=3.85;ReadPosRankSum=-1.617;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:228,42:0.16:270
chr13	25671272	rs376589131	AG	A	1153.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.941;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-8.278;QD=4.26;ReadPosRankSum=-1.343;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:229,42:0.15:271
chr13	25671274	rs76994938	C	T	1199.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.945;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-8.241;QD=4.46;ReadPosRankSum=-1.088;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:227,42:0.16:269
chr13	25671292	rs80261016	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:233,51:0.18:284
chr13	25671310	rs371130768	TTATGA	T	1417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=8.772;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-7.050;QD=4.60;ReadPosRankSum=5.064;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:255,53:0.17:308
chr13	25671320	.	A	G	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=10.015;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-6.551;QD=4.92;ReadPosRankSum=5.040;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:246,54:0.18:300
chr13	25671332	rs371570689	CA	C	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=12.910;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-4.742;QD=2.14;ReadPosRankSum=4.041;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:237,55:0.19:292
chr13	25671369	rs76804900	G	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=17.673;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-5.013;QD=0.94;ReadPosRankSum=-0.339;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:254,47:0.16:301
chr13	25671667	rs75484271	A	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-13.675;QD=2.60;ReadPosRankSum=3.290;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:202,30:0.13:232
chr13	25671672	rs78778235	A	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-14.068;QD=2.35;ReadPosRankSum=3.529;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:215,30:0.12:245
chr13	25671679	rs112901832	T	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-14.275;QD=2.16;ReadPosRankSum=3.491;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:222,30:0.12:252
chr13	25671688	rs113617207	G	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-14.907;QD=1.74;ReadPosRankSum=3.652;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:244,30:0.11:274
chr13	25671699	rs201614365	GT	CC	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.725;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-16.787;QD=1.03;ReadPosRankSum=4.895;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:270,26:0.09:296
chr13	25802491	rs4770813	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	25802676	rs7319109	A	G	5830.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.150;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-0.045;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:2,233:0.99:235
chr13	25807512	rs74654793	T	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	25831943	rs141856051	G	A	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr13	25848404	rs4387458	A	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	25886932	rs4341628	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	25887778	rs77639634	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr13	25901781	rs7997070	A	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	25905482	rs139076471	A	ATTTT	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	25911050	.	ATT	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.137;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr13	26117697	rs77057091	T	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	26137989	rs12871941	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	26155953	rs7335339	G	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	26273385	rs6491088	G	C	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	26273538	rs2296003	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	26436641	rs2249800	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	26501227	rs1185907	C	T	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	26535625	rs9511998	G	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	26625047	rs4770911	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	26625135	rs4769452	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	26625172	rs4770912	G	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	26927835	rs115700653	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	26928055	rs114807597	CA	TG	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	26933748	rs6491119	T	C	11202.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr13	26967477	rs71809345	C	CT	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.787;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.004;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr13	26971195	rs9943877	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	27643646	rs2484112	C	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	27690448	.	CAAAAA	C,CAAAA	258.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.38;MQRankSum=-0.189;QD=16.17;ReadPosRankSum=1.339;SOR=0.275;set=HC	GT:AD:AF:DP	1/2:1,5,10:0.31,0.62:16
chr13	27827888	rs142768843	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	27829310	rs3094293	G	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	27845284	rs9507866	C	A	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	27845571	rs151140476	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr13	27997985	rs33932496	GC	G	5107.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	27997999	rs3759433	G	A	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	27998074	rs35458689	CT	C	275.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.405;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr13	28009031	rs7323	G	C	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	28009920	rs1218825	G	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	28133956	rs373436911	TA	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.597;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:120,51:0.30:171
chr13	28143229	rs8002697	A	G	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr13	28155994	rs9512753	G	C	107.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	28367061	rs1231058	A	G	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	28519354	rs2504220	A	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	28519377	rs7333200	C	T	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	28519416	rs7334094	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr13	28537242	rs1805108	A	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	28537317	rs1805107	G	A	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	28537537	rs2504212	T	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	28539185	rs2481953	TG	AA	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	28541583	rs2481967	T	G	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	28589662	rs4497507	C	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	28608473	rs35958982	C	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	28622356	rs2153000	G	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	28624374	rs80133756	G	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	28636084	rs7338903	G	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	28644510	rs2387350	C	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	28647534	rs8000938	T	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	28674628	rs12872889	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	28712740	.	T	TGGCGGCGGC,TGGCGGC	4331.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=240;set=Intersection	GT:AF:DP	1/1:0.98:182
chr13	28712743	rs111938639	T	C	9577.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr13	28835527	rs5802469	T	TC	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	28835683	rs45492602	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	28844811	rs45529534	C	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	28851332	rs719368	G	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	28854692	rs35542876	A	AT	311	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.674;QD=7.07;ReadPosRankSum=0.234;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr13	28866686	rs45465396	T	TG	2312.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	28877629	rs3029489	AC	A	34.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.72;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	28882948	rs9579177	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	28883061	rs7993418	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	28886113	rs7328692	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	28893484	rs2296188	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	28942840	rs11374493	C	CT,CTTT	443.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.125;SOR=0.713;set=HC	GT:AD:AF:DP	1/2:9,14,11:0.41,0.32:34
chr13	28970917	rs7990486	C	T	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	28980150	rs5802481	A	AG	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	29007896	rs61763173	C	T	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	29041581	rs17086710	C	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	29236489	rs1340815	C	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr13	29238576	rs3737528	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	29275102	rs947027	T	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	29287373	rs143624220	T	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	29675131	rs3829381	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr13	29898768	rs928661	A	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr13	29898784	rs61999322	G	A	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr13	29898881	rs928660	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	30014373	rs7337496	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	30071310	rs2258198	G	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	30075114	rs882953	C	T	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	30077088	rs2482096	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	30090404	rs2989592	T	C	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	30091516	rs2490267	T	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	30091714	rs2482089	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	30091819	rs2482090	G	C	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	30098215	rs2776957	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	30098226	rs2776958	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	30346188	rs2234416	A	C	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	30351248	rs35681461	T	TA	2350.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	30804814	rs201826018	CA	C	50.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	30805627	rs202087	A	G	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	30829757	rs11348486	CA	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.171;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr13	30854363	.	T	TAA	471.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=0.596;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr13	31036681	rs1929606	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	31195409	.	G	GT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.106;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr13	31231513	rs7983138	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	31231806	rs7984952	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr13	31232430	rs9578190	C	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	31233063	rs3742302	G	A	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	31287736	rs59424095	C	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	31288052	rs59534427	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.80;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	31309830	rs4769055	C	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	31318020	rs4360791	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	31480827	rs9531945	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	31495835	rs41433250	C	T	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	31531195	rs6560988	T	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	31715439	rs17075529	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	31722620	rs35594388	TA	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.387;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr13	31725617	rs2146895	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	31728666	rs2274018	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	31735759	rs2280059	G	A	11281.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr13	31735885	rs17075608	C	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	31789169	rs35344913	CT	C	412.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.884;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.081;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.401;QD=13.76;ReadPosRankSum=0.542;SOR=0.136;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr13	31796969	rs2147515	G	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	31821093	rs9542300	T	C	501.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;MQRankSum=0.000;QD=20.07;ReadPosRankSum=-0.987;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr13	31821992	rs4943266	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	31835268	rs34409451	AC	A	828.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	31850717	rs140830495	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	31891561	rs1041074	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	32332292	rs9548977	C	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	32340193	rs35564049	T	TA	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	32348859	rs9549049	T	C	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	32360547	rs7325513	A	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr13	32360691	rs140904878	T	TAAA	295.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=10.414;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.65;ReadPosRankSum=1.829;SOR=2.209;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr13	32676114	rs364995	A	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	32698321	rs7992425	G	A	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	32721615	rs2285330	C	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	32723799	rs204558	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	32747654	rs17077179	C	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	32747731	rs55659531	CT	C	1093.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	32758834	rs798971	A	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	32776253	rs2520704	A	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	32776306	rs2762035	A	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	32776318	rs2762036	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	32776603	rs2428249	T	C	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	32785086	rs798981	G	A	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	32786416	rs798983	T	A	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr13	32786614	rs798984	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	32798235	rs5802638	T	TA	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	32823882	rs2806630	G	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	32825913	rs2806632	A	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	32825941	rs2806633	C	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	32826186	rs2806634	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	32828553	rs2157961	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	32832149	rs2520686	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	32832350	rs2806636	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	32834538	rs5802640	C	CTATCT	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	32866221	rs6561216	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	32877888	rs9526061	A	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	32884653	rs206110	G	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	32905265	rs206073	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	32906729	rs144848	A	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	32913055	rs206075	A	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	32915005	rs206076	G	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	32929387	rs169547	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	33017043	rs3742318	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:5,51:0.91:56
chr13	33054695	rs117762213	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr13	33222831	rs2301389	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33232334	rs7335546	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	33232435	rs2301393	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	33232524	rs41292173	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	33253136	rs11355777	GA	G	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	33275733	rs34184885	G	GCA	107	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	33315186	rs2320469	C	T	84.28	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33315189	rs2320470	G	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.92;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:0,3:1.00:3
chr13	33315206	rs733487	G	A	167.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.25;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	33320054	rs4942867	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	33332648	rs3752474	G	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	33333876	rs7988089	A	C	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	33344241	rs112309957	AT	A	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	33349235	rs57144014	C	CTTTT	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=24.19;ReadPosRankSum=-0.511;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr13	33349341	rs3492	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	33590851	rs2772364	T	C	8560.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	33627760	rs7323281	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	33627829	rs570875	T	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	33635463	rs648202	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	33635835	rs649964	T	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	33635939	rs650439	T	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	33680854	rs642899	T	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	33686844	rs34128539	G	GA	2966.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	33700374	rs1980781	T	G	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	33701347	rs2764617	C	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	33703656	rs495680	T	C	12329.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr13	33704065	rs3742321	T	C	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr13	33739629	rs797232	G	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	33741559	rs797229	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	33923314	rs9597272	T	C	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	34013847	rs876133	G	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	34098232	rs1329344	A	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	35252751	rs147760783	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	35618970	rs201041916	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr13	35618991	rs7996448	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	35785074	rs56157510	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	35806549	rs9565113	T	G	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	36049080	rs9565317	T	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	36141009	rs9544667	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	36224051	rs200267946	TACTGGG	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	36225929	rs7991019	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	36428595	rs1926466	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	36521433	rs1936004	T	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	36521460	rs1936003	A	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	36686138	rs3748308	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	36700352	.	ATATT	A	62.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.504;QD=0.86;ReadPosRankSum=-0.831;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:64,9:0.12:73
chr13	36700354	rs113810001	ATT	A	1710.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.598;QD=25.92;ReadPosRankSum=1.272;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:9,57:0.86:66
chr13	36747798	rs1410633	C	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	36788529	rs3762116	C	T	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	36801256	rs9546784	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	36801415	rs9546785	C	T	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	36801579	rs9546786	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	36801587	rs9546787	T	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	36801612	rs138475016	T	TACACAC	427.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr13	36805289	rs67328439	GA	G	798.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	36805625	rs4397984	C	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	36814682	rs9546834	A	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	36818037	rs9546862	A	G	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr13	36818080	rs9546863	C	T	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	36822711	rs9315402	G	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	36822849	rs9315403	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	36822884	rs9315404	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	36822908	rs9315405	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	36827833	rs9546886	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	36827896	rs9546887	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	36828092	rs138966884	G	GTTTTGTAAGCA	2836.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	36828237	rs9546897	T	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	36829085	rs912928	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	36829209	rs1078302	C	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	36829258	rs751518	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	36829301	rs751519	A	T	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	36871730	rs9547145	G	T	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr13	36939758	rs3736920	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	36940028	rs1041140	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	36942533	rs1056850	G	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	37007501	rs9576049	G	T	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37007507	.	TTTTCTTTC	T	79	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=0.9998;HP=3;HapScore=4;MGOF=0;MMLQ=24;MQ=54.26;NF=0;NR=2;PP=79;QD=44.5;SC=GATTGATTTATTTTCTTTCTT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=37007522;WS=37007491;set=Platypus	GT:AD:AF:DP	1/1:5,2:0.29:7
chr13	37401917	rs11285105	GT	G	1888.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	37439964	rs3748305	C	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	37526560	rs6563506	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	37546280	rs9576146	G	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	37569200	rs2323165	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	37580139	rs1127446	G	A	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	37581051	rs9576154	T	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	37583831	rs9469	G	A	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	37584838	rs7317750	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	37593424	rs9566175	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	37598113	rs4943441	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	37621528	rs1199983	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	37625601	rs1543738	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	37625770	rs5802853	A	AG	337.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37679268	rs9576175	G	T	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr13	38138730	rs4390468	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	38143325	rs58863577	CT	C	85.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.69;ReadPosRankSum=-1.534;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr13	38152959	rs7322626	T	G	175.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	38153130	rs7322993	T	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	38153351	rs7323378	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	38154189	rs7986347	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	38166068	rs9547968	C	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	38166357	rs9603229	T	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	38237872	rs2985171	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	38266000	rs7329237	G	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	38320594	rs35278654	TA	T	247.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.03;QD=16.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	38357471	rs3904512	G	A	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	38924083	rs2231330	A	T	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	38924263	rs2231332	T	C	8564.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr13	38930893	rs2481880	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	38931144	rs9548318	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	38931650	rs34489703	G	GT,GTT	1148.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.97;SOR=1.005;set=HC	GT:AD:AF:DP	1/2:0,12,34:0.26,0.74:46
chr13	38932174	rs71720939	TTG	T	30.71	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	38932208	rs9576514	A	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	38932545	rs11381230	G	GT	153.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	38932648	rs2485786	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	38932681	rs2485785	G	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	39262057	rs1868464	G	A	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	39263714	rs2496423	T	C	22276.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	1/1:0,856:1.00:856
chr13	39338612	rs2442370	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	39430182	.	TAAAAA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.09;ReadPosRankSum=1.292;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr13	39430314	rs9548509	C	T	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	39448455	rs9548518	A	G	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	39450583	rs67517056	T	TA	144.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=1.435;QD=6.59;ReadPosRankSum=0.799;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr13	39452235	rs1540131	T	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	39452538	.	T	TGGCC	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.000;QD=26.51;ReadPosRankSum=2.973;SOR=3.334;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr13	39452934	rs9532296	C	T	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	39546530	rs8000175	C	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	39586979	rs41286143	G	T	2029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.601;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=-0.967;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr13	39598616	rs61945763	G	A	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	39598698	rs67984592	TA	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.186;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr13	39618366	.	TTG	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.451;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr13	40229724	rs7327779	A	G	6542.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.043;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.131;QD=24.78;ReadPosRankSum=-0.648;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,263:1.00:264
chr13	40229842	rs67765306	A	AG	1566.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr13	40229891	rs3812882	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr13	40229957	rs3812883	T	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	40230043	rs3812884	C	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	40230122	rs3812885	A	C	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	40230216	rs3812886	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	40230229	rs3812887	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	40230294	rs3812888	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	40233404	rs7330515	T	C	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	40233691	rs7330016	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	40238162	rs4636783	C	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	40238175	rs67976778	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	40238387	rs4566029	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr13	40239139	rs7991151	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	40252190	rs4941939	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	40253901	rs4941940	A	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	40293288	rs5803008	AT	A	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	40297684	rs7985075	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	40298805	rs9532421	C	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	40325310	rs4245396	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	41515286	rs1056820	T	A	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr13	41517985	rs3764056	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	41525586	rs3736953	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	41533052	rs7799	T	C	14054.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-0.747;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,550:1.00:551
chr13	41705495	rs584594	A	G	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr13	41706800	rs9566703	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	41767338	rs2039134	A	G	2387.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;MQRankSum=-0.658;QD=29.85;ReadPosRankSum=-0.033;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:4,76:0.95:80
chr13	41767341	rs2039135	A	G	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=44.77;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	41891170	rs7319540	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	41893105	rs2065498	T	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	41902939	rs3812896	T	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	41949804	rs6560982	G	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	42042873	rs150442518	ACT	A	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.349;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:266,29:0.10:295
chr13	42043086	rs2324791	C	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	42044508	rs396963	A	G	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	42275473	rs7322461	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	42439498	rs76291279	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	42465490	rs7332372	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	42481712	rs2003064	C	T	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	42486399	rs2875457	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	42701717	rs605371	A	G	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	42701739	rs670676	A	T	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	42701803	rs957255	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	42703682	rs3742261	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	42734389	rs10492444	C	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	42748077	.	ATG	A	203	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=3;MGOF=14;MMLQ=24;MQ=60.0;NF=5;NR=4;PP=203;QD=23.4444444444;SC=TAGTTCATGAATGTGTGTGTG;SbPval=0.63;Source=Platypus;TC=20;TCF=11;TCR=9;TR=9;WE=42748086;WS=42748067;set=Platypus	GT:AD:AF:DP	1/0:11,9:0.45:20
chr13	42748100	.	CGT	C	108	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=60.0;NF=4;NR=4;PP=108;QD=14.375;SC=TGTGTGCGTGCGTGTGTGTGT;SbPval=0.36;Source=Platypus;TC=24;TCF=9;TCR=15;TR=8;WE=42748111;WS=42748090;set=Platypus	GT:AD:AF:DP	1/0:16,8:0.33:24
chr13	42764439	rs1170119	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	42772717	rs9533031	G	T	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.91;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr13	42772774	rs35298264	GT	G	507.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.408;QD=14.51;ReadPosRankSum=1.298;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr13	42783012	rs168329	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	42793298	rs9315899	G	T	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	42793479	rs180870	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	42793766	rs11277175	AGGTTTTTC	A	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	42794004	rs347382	G	A	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	42803341	rs545602	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	42869720	rs3835266	A	AG	328.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	42882762	rs238314	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	42888230	rs9566957	A	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	43148565	rs2296533	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	43155168	rs2277438	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	43155443	rs2277439	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	43463299	rs1323864	T	C	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	43474371	rs4942174	C	T	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	43491778	rs61066479	G	GAA	418.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=0.640;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr13	43566373	rs3825511	A	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	43788036	rs703206	T	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	43839494	rs4306408	G	A	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	43872419	rs4451860	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.91;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	43872451	rs141332734	C	CA	291.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.797;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr13	43985996	.	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	44433700	rs1562216	G	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	44948295	rs201663302	T	TG	4437.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	44948302	rs199705926	GA	G	4246.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=1.313;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	44964723	rs2281848	C	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	44969907	rs1467624	G	A	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	45010283	rs1555781	T	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	45010616	rs7997320	G	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	45090478	rs1336163	A	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr13	45090580	rs1336164	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	45556056	rs148833607	T	TCATGTTTAACATAAAACATAAAA	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	45563464	rs1140993	G	C	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	45726046	.	CTTT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.67;ReadPosRankSum=1.559;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr13	46039407	rs11619408	G	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	46060467	rs374009383	CG	C	1263.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	46060473	rs113621277	AC	A	1303.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	46066163	rs3014948	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	46077301	rs3014959	G	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	46077381	rs3014960	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	46085699	rs2985969	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	46085864	rs2985970	A	G	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	46093284	rs3818456	C	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	46098994	rs3014966	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	46099243	rs2985984	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	46103935	rs2274285	A	G	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	46104130	rs2274286	G	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	46105021	rs66498730	AT	A	289.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	46108643	rs3014901	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46108853	rs3014902	TG	CA	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	46115731	rs1536207	C	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	46124290	rs2860345	T	A	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr13	46137837	rs3014917	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	46148855	rs747652	A	G	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	46170609	rs3014939	C	T	11042.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr13	46170719	rs142875900	CCCAGATACTCTTCCTCCT	C	11468.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,282:0.99:284
chr13	46287153	rs9316154	A	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	46288145	rs7317245	A	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	46358320	rs10578981	CAACA	C	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	46541673	rs9534264	T	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	46550061	rs11428563	G	GT	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	46562935	rs1134071	A	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	46619026	rs962694	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	46619071	rs3736943	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	46619316	rs3736944	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46627677	rs1049669	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	46629944	rs1926447	A	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr13	46629995	rs1926446	C	A	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	46641324	rs34583549	T	TA	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	46641481	rs7337140	T	C	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr13	46656412	rs3818477	T	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	46656669	rs2296642	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	46705068	rs11558762	C	A	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	46708291	rs4941543	T	C	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr13	46717047	rs9534341	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	46717246	rs2182485	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	46728924	rs2296122	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	46836201	rs2764598	A	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	46930372	rs9526171	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	47243357	rs73193018	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	47256071	rs151080336	T	TTGTGTGTG	290.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	47260054	rs842381	T	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	47261970	rs842375	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	47273458	rs706621	G	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	47279375	rs11483731	C	CT	1554.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	47279454	rs842387	A	G	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	47279680	rs3832915	A	AT	1117.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=23.78;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	47297352	rs7319836	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	47302934	rs3742273	T	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	47308109	rs2298086	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	47315984	rs3742274	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	47358540	rs8192889	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	47470824	rs6312	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	48523567	rs17425881	T	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	48547467	rs7320366	A	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	48563008	rs6561424	G	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	48563246	rs6561425	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	48571213	rs8001509	C	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	48575207	rs11316376	GA	G	5228.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.149;QD=25.63;ReadPosRankSum=1.282;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:2,202:0.99:204
chr13	48575292	rs9567972	C	T	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.40;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr13	48653864	rs5803423	CA	C	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr13	48664556	.	T	TA	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=4.081;QD=1.67;ReadPosRankSum=1.156;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:176,53:0.23:229
chr13	48669064	rs3809330	C	T	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr13	48827810	rs9285166	T	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	48835162	rs9316371	G	A	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	48878271	rs2854351	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	48953655	rs11449461	C	CA	230.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=14.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr13	49070512	rs7326934	G	C	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	49077088	rs9332043	C	CA	9649.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr13	49107061	rs74371188	G	T	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr13	49107241	rs7997110	T	C	12612.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr13	49752915	rs1407826	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.44;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	49772715	.	G	GT	2519.73	.	AC=2;AF=1.00;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr13	49840024	rs6561512	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	49852430	rs2274149	T	G	1865.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.91;ReadPosRankSum=-0.944;SOR=0.498;set=HC	GT:AD:AF:DP	1/1:1,71:0.99:72
chr13	49854941	.	A	AATT	203.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr13	49865748	rs6561514	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	49885216	rs912547	A	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	49918175	rs35214871	G	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	50007393	rs7998660	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	50008112	rs3764091	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	50008301	rs3764090	A	G	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr13	50035151	rs721457	G	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	50035208	rs2077848	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	50038080	rs12429813	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	50050620	rs7998427	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	50054308	rs4142285	G	A	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	50054346	rs7996852	G	T	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	50057097	rs2057413	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	50057633	rs11619265	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	50070244	rs370049093	GGGGC	G	938.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	50080847	rs2031532	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	50092127	rs66480424	TACTC	T	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	50095127	rs3765526	A	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	50096127	rs2274277	C	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	50100090	rs7322908	T	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	50100320	rs7321952	A	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=37.98;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	50100389	rs7323493	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=25.43;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	50100627	rs10546233	GTT	G	632.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	50100637	rs371713260	ATATT	A	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	50100647	rs61960012	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	50100667	rs6561533	G	A	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	50102810	rs1046295	G	A	4693.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=2.034;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:2,183:0.99:185
chr13	50108252	rs7317982	T	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	50114981	rs2296502	T	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	50115669	rs1536195	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	50115797	rs73190749	A	G	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	50121211	rs1570883	G	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	50121311	rs3039280	C	CAA	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=-1.530;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr13	50123649	rs3751383	G	A	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr13	50123688	rs3751382	G	T	11324.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr13	50123832	rs3751381	C	G	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	50125622	rs9568246	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	50125678	rs9568247	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	50126382	rs2274278	G	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	50126481	rs3215806	CA	C	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	50126490	rs2274279	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	50126505	rs2274280	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	50129599	rs2274283	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	50129615	rs2274284	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	50134020	rs67275254	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr13	50134099	rs17073145	T	C	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	50134150	rs17073150	A	G	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	50141276	rs9562899	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	50141362	rs9562900	G	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	50260905	rs6561552	T	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	50265661	rs3825408	G	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	50296026	rs9535310	T	C	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	50296115	rs1127021	C	T	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	50306823	rs11342957	GA	G	1465.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr13	50366743	rs201124891	A	AG	723.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.25;QD=30.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	50466911	rs34448316	G	A	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:9,130:0.94:139
chr13	50467124	rs7316930	T	C	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	51397440	rs9563002	C	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	51397766	.	GT	G	22	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.4999;HP=11;HapScore=2;MGOF=25;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=22;QD=10.3333333333;SC=CAGCACTCTGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=51397774;WS=51397756;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr13	51417535	rs898861	G	A	1970.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=1.098;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr13	51530414	rs1328360	A	T	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	51796468	rs7320388	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	51929375	rs9596506	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	51953840	rs3818360	C	T	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	51956122	rs9526753	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	52293532	rs912097	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	52351037	rs2296026	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	52373814	rs9535761	G	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	52391341	rs975504	C	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	52425515	rs147056819	AGAG	A	2328.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=40.85;SOR=1.823;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	52425587	rs36141261	A	AT	1012.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.398;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:7,56:0.89:63
chr13	52482399	rs35577493	CAG	C	4440.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=44.41;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	52511275	rs200831452	GAA	G	431.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	52511362	rs9535795	C	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	52511606	rs2282057	G	A	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr13	52515354	rs1801249	A	G	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:4,124:0.97:128
chr13	52520435	rs1801248	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	52520704	rs2296246	C	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	52523808	rs732774	C	T	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	52524488	rs1061472	T	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	52524560	rs9526811	C	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	52542796	rs2147363	T	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	52544805	rs1801244	C	G	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr13	52544978	rs3742288	T	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	52548140	rs1801243	A	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	52585548	rs2277448	G	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.89;QD=25.88;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	52585591	rs148013251	T	TCGGCG	2810.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	52602919	rs3825528	A	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	52603194	rs3742289	G	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	52603775	rs3742291	C	T	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	52657287	rs9563091	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,43:0.90:48
chr13	52657677	.	AT	A	234	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=13;HapScore=3;MGOF=4;MMLQ=25;MQ=59.93;NF=0;NR=5;PP=234;QD=47.8;SC=GATATCCACCATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=5;WE=52657697;WS=52657667;set=Platypus	GT:AD:AF:DP	1/1:19,5:0.21:24
chr13	52657689	rs12585654	T	G	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	52657689	.	T	TG	235	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=0.5007;HP=12;HapScore=3;MGOF=6;MMLQ=27;MQ=59.92;NF=0;NR=5;PP=235;QD=48.0;SC=TTTTTTTTTTTTGAGATGGAG;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=5;WE=52657697;WS=52657667;set=Platypus	GT:AD:AF:DP	1/1:14,5:0.26:19
chr13	52663491	rs9535861	A	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	52684801	rs71665641	TAC	T	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	52701490	rs3076657	A	ACTT	3336.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	52701637	rs1886544	T	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr13	52701782	rs1886543	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	52707240	rs3368	C	G	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	52707751	rs3831081	T	TCACACA,TCACA	1274.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	0/1:0.92:37
chr13	52709742	rs2408611	G	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	52710044	rs2296350	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	52710058	rs2296349	T	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	52718050	rs3837575	C	CT	320.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	52952928	rs113543720	CA	C	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	52971893	rs3803264	G	A	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	52989863	rs1056335	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	53009048	rs11148252	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	53010353	rs150816705	A	AACACACAC	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.000;QD=40.59;ReadPosRankSum=-0.829;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chr13	53029770	rs72440971	CGCGGTGGCGGTGGCGGTG	C	4167.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	53030565	rs9536079	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	53035783	rs7337054	T	C	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	53035925	rs7335867	A	G	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr13	53036398	rs3803262	A	G	269.31	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr13	53240884	rs9316580	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	53254082	rs4539485	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	53254296	rs7986540	A	G	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	53608479	rs2298230	G	A	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	53608632	rs2298231	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	54615315	rs144930433	CA	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	54615571	rs144567553	ATAGAT	A	3318.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	58299434	rs5803842	G	GA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.884;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr13	60385060	rs10665848	A	ATTAC	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	60582635	.	ATAT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=1.111;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr13	60971421	rs36124731	A	AG	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.671;QD=14.90;ReadPosRankSum=0.543;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr13	60971593	rs9538679	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	61041312	rs9538715	G	A	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	61988107	rs4281600	T	G	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr13	63745832	rs298898	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	67800935	rs9571740	G	A	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	67802339	rs8000556	A	T	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	70314807	rs7331253	A	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	70535355	rs9592668	T	A	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	70549942	rs144583054	CCA	C	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,8:0.20:40
chr13	72038653	rs915052	C	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	73301480	rs9652239	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	73301655	rs1465897	A	C	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr13	73301728	rs1465896	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr13	73302157	rs11350390	CT	C	9941.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr13	73302481	rs4885034	G	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	73309347	rs9543106	C	T	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	73317585	rs9600019	C	T	146.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	73317847	rs34245891	C	CT	332.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.51;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	73329358	rs10887	G	A	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr13	73335383	rs9573028	G	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	73343039	rs2196979	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	73350079	rs4883918	T	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	73366704	rs11148921	A	T	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	73402075	rs9564921	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	73409622	rs2038846	C	G	132.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	73547715	.	G	GT	55	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=10;HapScore=2;MGOF=46;MMLQ=27;MQ=58.7;NF=1;NR=1;PP=55;QD=33.5;SC=TAAAACTGGGGTTTTTTTTTT;SbPval=0.74;Source=Platypus;TC=8;TCF=4;TCR=4;TR=2;WE=73547723;WS=73547705;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr13	73636910	rs113148226	A	AGT	1547.82	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:8,69:0.90:77
chr13	73638125	rs4885061	G	T	348.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=0.212;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr13	73650108	rs148760123	C	CA	627.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=0.085;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr13	73650112	rs9573097	C	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	74289799	rs6562780	A	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	74339104	rs3764134	G	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	74518210	rs9573330	G	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	74988714	rs1931954	C	T	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	75860804	rs534538	C	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	75880667	rs2297209	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	75884216	rs1062087	C	T	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	75887127	rs2274757	T	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	75894015	rs2274758	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	75898596	rs2297210	C	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	75901749	rs2297206	G	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	75910909	rs693134	C	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	75910950	rs9573525	T	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	75915215	rs80163254	T	C	3031.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	75915215	.	TAT	CCA	1986	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=1;HapScore=1;MGOF=84;MMLQ=26;MQ=60.0;NF=23;NR=14;PP=1986;QD=55.3910236449;SC=TTAACAAAATTATTAAACAAC;SbPval=0.46;Source=Platypus;TC=42;TCF=27;TCR=15;TR=37;WE=75915225;WS=75915205;set=Platypus	GT:AD:AF:DP	1/1:5,37:0.88:42
chr13	75915216	rs80143047	A	C	3031.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	75915217	rs76964739	T	A	3031.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	75915250	rs35018625	T	TA	3964.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	75915859	rs9888477	C	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	75923536	rs3831188	T	TA	147.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	75936519	rs7983969	C	G	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	76101863	rs1408042	T	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	76102137	rs71127549	GCACACACA	G,GCACA	251.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=12;set=Intersection	GT:AF:DP	1/2:0.43,0.57:7
chr13	76123899	.	AGCG	A	34	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=56.92;NF=2;NR=0;PP=34;QD=25.5;SC=CGTGGGCGGAAGCGGCGGCGG;SbPval=1.0;Source=Platypus;TC=15;TCF=12;TCR=3;TR=2;WE=76123909;WS=76123895;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr13	76124151	rs8192738	C	T	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr13	76135028	rs4884008	T	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	76140814	rs56945758	CT	C	146.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	76169234	rs7330411	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	76287432	rs3837544	ATG	A	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	76334818	rs7997101	C	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	76335196	rs10594987	GAT	G	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	76370755	rs11351364	AT	A	979.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,69:0.81:85
chr13	76378459	rs625033	T	C	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	76378737	rs2274062	A	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	76412569	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.266;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr13	76445382	.	ATC	A	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.650;QD=5.74;ReadPosRankSum=-3.234;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr13	77522925	rs588702	T	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	77527764	rs17385627	T	A	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	77566090	rs77416795	C	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	77569901	rs605153	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	77574518	rs58575113	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.49;ReadPosRankSum=-0.649;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr13	77630994	rs1340531	T	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	77632470	rs2285386	C	T	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	77644862	.	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.219;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr13	77725106	rs9574006	C	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	77732333	rs3861128	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	77739291	rs9318468	A	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	77751892	rs4885445	C	T	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr13	77792099	rs374242789	TA	T	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.562;QD=2.81;ReadPosRankSum=0.359;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr13	77835520	rs11436373	T	TA	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.872;QD=14.28;ReadPosRankSum=1.374;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr13	78146301	rs678047	C	T	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	78191824	rs4142585	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	78272267	rs201380414	T	TGG	1825.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=43.47;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	78272276	rs71102772	G	GC	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	78317054	rs372604248	CT	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.861;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr13	78470789	rs3027094	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	78477674	rs5348	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	79766188	rs2988039	A	G	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	79894736	rs3187338	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	79915389	rs7981067	G	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	79916792	rs374223990	T	TA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	79916973	rs3742118	A	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	79927157	rs11341470	CA	C	275.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	79929183	rs9530900	G	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	79929326	rs9530901	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	79932617	rs7994560	A	G	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	79940150	rs3831152	CTG	C	1462.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	79940811	rs7327603	T	C	2555.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.407;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-0.608;SOR=0.543;set=HC	GT:AD:AF:DP	1/1:1,102:0.99:103
chr13	79946072	rs73564673	A	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.587;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr13	79946104	rs9545093	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	79946163	rs7325232	G	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	86369120	rs3825413	C	T	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	86369403	rs17080147	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	88270840	rs4036976	CTGT	C	2696.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.91;QD=46.50;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	88270856	.	T	C	818	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=66.24;NF=28;NR=15;PP=818;QD=19.8318886639;SC=TTGTTGTTGTTGTCATTGTTG;SbPval=0.75;Source=Platypus;TC=54;TCF=32;TCR=22;TR=43;WE=88270868;WS=88270846;set=Platypus	GT:AD:AF:DP	1/1:11,43:0.80:54
chr13	88270857	.	GTCA	G	1212	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=24;MQ=65.22;NF=11;NR=15;PP=1212;QD=47.1538461538;SC=TGTTGTTGTTGTCATTGTTGT;SbPval=0.51;Source=Platypus;TC=37;TCF=15;TCR=22;TR=26;WE=88270868;WS=88270846;set=Platypus	GT:AD:AF:DP	1/1:11,26:0.70:37
chr13	88270860	rs956960	A	G	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.64;QD=39.26;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	92345387	rs554857	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	92345579	rs553717	C	T	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	93142312	.	TA	T	1584.73	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	93142318	.	A	T	1711.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=40.76;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	93142362	rs722178	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	94938785	rs1409174	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	94938808	rs56210803	GAT	G	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	94958100	rs10492630	T	A	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	95034763	rs2274020	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	95227128	.	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-1.082;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr13	95229712	rs145935356	A	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr13	95243270	rs9301979	G	A	8397.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	95363884	rs9556411	G	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	95364337	rs2253604	T	G	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.16;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	95673939	rs9524765	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	95829843	rs2296653	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	95829870	rs1751005	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	95847020	rs2274403	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	95900172	.	G	GCACACACACACACACACACACACACACACACACA	173.90	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=57.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	96241445	rs34303958	T	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	96270163	rs74109022	G	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	96276918	rs146766735	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	96285507	rs35961322	A	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	96329413	.	G	T	1962.77	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	96361650	.	C	CT	1236.73	.	AC=2;AF=1.00;AN=2;DP=69;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	96410115	rs3087339	C	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	96508566	rs35123499	T	A	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	96529481	rs150699923	CA	C	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.76;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	96540141	rs9525075	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	96540141	.	TTT	CTC	600	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=8;NR=10;PP=600;QD=36.3037708257;SC=TTCACTCAGATTTACCTTTCT;SbPval=0.42;Source=Platypus;TC=20;TCF=10;TCR=10;TR=18;WE=96540151;WS=96540131;set=Platypus	GT:AD:AF:DP	1/1:2,18:0.90:20
chr13	96540143	rs9525076	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	96543106	rs45627340	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	96599271	rs7986005	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	96599445	rs9556513	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	96601838	rs1411556	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	96624761	rs139718670	TTACAC	T	323.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	96638636	rs816142	A	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	96641695	rs555120	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	96643585	rs73562929	A	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	96648384	rs73562939	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	97079618	rs9556587	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	97639021	rs9584456	A	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	97639414	rs9284174	C	T	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	97639827	rs9300380	T	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	98087096	rs3803251	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	98629334	rs9517155	G	C	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr13	98632349	rs555647	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	98634572	.	T	A	23	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=3;HapScore=2;MGOF=15;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=23;QD=28.8856062736;SC=AGGAACTTGATAAGTAACCCT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=98634580;WS=98634564;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	98637917	rs11366582	CT	C	163.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;MQRankSum=0.588;QD=10.90;ReadPosRankSum=-1.873;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr13	98640318	rs592246	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	98640386	rs588144	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	98645580	rs56411106	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	98650024	rs651241	G	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	98658358	rs633161	G	A	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	98666549	rs6491395	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	98670641	rs528546	G	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	98672084	rs74108123	C	T	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr13	98829217	rs16955011	C	T	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr13	99037154	rs599255	C	T	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	99037870	rs585678	T	C	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	99038087	rs584800	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	99042390	rs2256823	T	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	99047323	rs16955482	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	99061556	rs5806061	C	CT	3081.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:10,144:0.94:154
chr13	99064316	rs57099745	G	A	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	99076686	rs9584843	A	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	99076965	rs7984394	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	99076998	rs74111050	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	99088006	rs1792	G	A	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	99088113	rs1998535	C	T	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	99090166	rs59023150	TG	T	1727.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	99093094	rs2146998	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	99098318	rs2274053	C	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	99105395	rs8481	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	99112468	rs112280830	T	TGCCTGAC	4554.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	99112680	rs4771305	C	T	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr13	99112754	rs4772083	TT	GC	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	99113868	rs111263017	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	99115927	rs2296149	A	G	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	99118881	rs61249551	G	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	99127252	rs9513430	C	G	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	99127496	rs2274055	C	T	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	99354931	rs1768042	C	T	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	99356612	rs1339067	A	G	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	99363919	rs6145194	GGTTTT	G	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	99364602	rs115331069	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	99373505	rs74900212	G	C	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	99447005	rs812808	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	99449579	rs1289314	T	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	99449755	rs1289315	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr13	99482135	rs9517460	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	99505632	rs9513497	C	T	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	99532622	rs6491460	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	99534048	rs6491461	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	99535252	rs115592985	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	99536031	rs9517474	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	99536215	rs2296996	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.89;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	99536220	rs2296997	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	99537202	rs2274641	C	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	99537217	rs2274642	G	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	99538711	rs6491465	C	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	99538935	rs6491466	C	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	99540385	.	G	A	409.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	99540395	rs1928104	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	99540500	rs2274643	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	99555187	rs35240640	AT	A	1650.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.423;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.314;QD=18.97;ReadPosRankSum=-1.338;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:3,84:0.97:87
chr13	99574524	rs7983462	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	99575775	rs7989935	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	99578265	rs7318788	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	99853443	rs7338947	T	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	99966516	rs369395751	C	CTT	201.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.147;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr13	99970429	rs56695114	CT	C	1023.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.73;QD=21.33;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	100199171	rs79434813	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	100199224	rs3751373	C	T	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	100201640	rs3803255	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	100515161	rs10648017	A	AGACTT	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	100517195	rs3831038	CTG	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.801;QD=0.79;ReadPosRankSum=-0.729;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:100,13:0.12:113
chr13	100518400	rs2390354	T	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	100518580	rs3783185	A	G	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	100523386	rs3742254	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	100537221	rs912283	T	C	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	100537232	rs912284	T	C	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr13	100537376	rs912285	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	100622667	.	T	TGGCGGCGGC	893.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;QD=49.65;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	100637102	rs9585308	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	100638090	rs34544768	G	GT	131.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.319;QD=10.98;ReadPosRankSum=1.068;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr13	100638392	rs13542	G	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	100764074	rs111778723	ATG	A	333.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	100764183	rs147037340	ATTAT	A	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	100921056	rs4306370	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	100945533	rs9300598	G	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	101020695	rs9518061	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	101179710	.	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.034;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr13	101182211	rs3059677	CGGTGG	C	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	101286924	rs1890861	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	101287365	rs946838	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	101287404	rs2297943	G	A	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	101289969	rs3809372	C	T	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr13	101289998	rs7985718	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	101308796	.	C	CTTTTT	70.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.000;QD=17.71;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	101308836	rs11315434	AC	A	138.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	101316313	rs1298168	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	101321067	rs2791680	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	101712426	rs2274085	G	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	101720300	rs1289556	T	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	101721029	rs11616341	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	101727043	.	CAG	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.452;QD=2.38;ReadPosRankSum=1.959;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:113,24:0.18:137
chr13	101727071	rs112963196	CAG	C	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,13:0.17:78
chr13	101735355	rs17581591	C	A	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr13	101747878	rs609246	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	101748121	rs1151376	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	101753023	rs113145864	C	CTG	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	101753025	rs57703343	GT	G	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	101755480	rs9300647	G	T	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	101755813	rs7331375	C	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	101936108	rs946023	T	G	324.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	101944752	rs570252	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	102021517	.	A	ATGTGTG	459.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr13	102021552	rs61496806	T	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	102025429	rs56313970	T	C	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	102030782	rs57317466	AAAAAT	A	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	102030837	rs59301533	G	A	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	102106464	rs2297701	C	T	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	102227872	rs3916912	C	T	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr13	102235519	rs3918322	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	102235764	rs370279713	TA	T	266.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.829;QD=14.04;ReadPosRankSum=-0.322;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr13	102344867	rs981073	A	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	102368056	rs1436266	G	T	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	102619987	rs7993843	G	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	102620137	rs11069471	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	102698415	rs7337292	A	G	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	102698459	rs667685	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	103271042	rs61711503	C	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	103271206	rs4576935	G	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	103275386	rs2230854	T	C	3585.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=0.760;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,142:0.99:143
chr13	103282279	rs660832	A	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	103282299	rs660811	C	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	103289338	rs2274463	C	T	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	103290535	rs613926	G	C	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	103290574	rs614290	G	A	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr13	103292810	rs634293	G	A	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	103295485	rs3831118	A	AT	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	103295551	rs144831383	CTTCT	C	4475.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	103296819	rs35462812	C	CAT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	103297435	rs10713633	CT	C	1095.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:10,73:0.88:83
chr13	103301537	rs664660	G	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	103301619	rs3215841	G	GT	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	103307218	rs673424	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	103307322	rs677248	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr13	103307360	rs677179	G	A	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr13	103307483	rs672129	G	A	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	103315948	rs9585959	G	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	103316113	rs7334625	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	103328579	rs665479	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	103328619	rs584710	C	A	167.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	103330718	rs3806	G	A	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	103339365	rs660207	A	G	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	103346659	rs7981120	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	103346806	rs2390760	C	G	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	103384824	rs9300756	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	103385015	rs6491707	A	G	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	103385299	rs7335290	A	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	103385798	rs7983175	T	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	103386116	rs7982465	C	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr13	103386283	rs7982670	A	G	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr13	103388220	rs9300758	A	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	103388370	rs9518825	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr13	103395819	rs1375720	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	103397937	rs9300759	T	G	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	103418728	rs8054	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	103420671	rs5806323	T	TA	977.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	103420680	rs1470654	C	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	103445609	rs11441956	G	GT	314.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	103449202	rs1047740	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	103473497	rs9557936	T	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	103474031	rs2148449	C	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	103484060	rs2181676	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	103491172	rs2281886	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	103491223	rs7337774	C	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	103501928	rs75982504	CA	C	300.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	103504344	rs4150263	A	G	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	103504517	rs1047768	T	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	103504650	rs2020915	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	103506509	rs1535729	A	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	103506690	rs4987063	G	A	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	103510896	rs3736865	C	T	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	103511211	rs4150298	A	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	103511301	rs4150299	T	C	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	103511336	rs73573944	G	A	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	103511472	rs4150300	A	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	103514091	rs7982448	T	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	103515561	rs4150321	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	103518036	rs55686372	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	103518416	rs56230254	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	103518769	rs6491716	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	103519119	rs73573973	G	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	103524762	rs4150360	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	103527849	rs9514066	G	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	103527930	rs9514067	G	C	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	103528002	rs17655	G	C	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	103698630	rs279940	C	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	103701555	rs59949705	C	T	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	103703481	rs279938	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	103705044	rs188096	A	C	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr13	103718114	rs1329516	A	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	106119446	rs2391191	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	107145463	rs7995379	G	C	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	107145829	rs3742160	A	T	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.12;SOR=1.673;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	107145835	rs114805535	A	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	107145881	rs57762655	T	TA	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	108955464	rs1224145	C	G	38.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	108959080	rs11381410	A	AT	53.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	109282302	rs9284241	T	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	109311775	rs4378499	G	A	4535.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	109472601	rs2146327	G	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	109472849	rs9521065	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	109472933	rs9514924	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	109496928	rs7989802	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	109550560	rs182348090	CA	TG	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	109700930	rs4773018	A	G	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	109717928	rs1431267	A	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	109793474	rs28705148	T	C	9912.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr13	109793720	rs7986595	A	C	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr13	109832084	rs1033870	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	110435302	rs9583424	T	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr13	110435953	rs4773092	A	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	110436232	rs3742210	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	110804809	rs650724	G	A	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	110807474	rs615742	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	110807496	rs616089	T	C	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	110807776	rs617111	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	110813523	rs2275842	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	110813532	rs2275843	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	110819586	rs589985	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	110821834	rs1838557	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	110821844	.	AAC	A	268.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr13	110826517	rs114503052	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	110827574	rs874203	T	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	110827580	rs874204	C	T	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	110828891	rs1975514	T	C	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr13	110828922	rs1562173	G	A	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr13	110831451	rs503053	T	C	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	110833564	rs16975491	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	110838703	rs2305080	T	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	110839428	rs9521638	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	110839550	rs536174	T	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	110845314	rs685884	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	110847227	rs505050	G	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.05;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	110850770	rs683309	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	110851036	rs995223	T	C	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr13	110853081	rs78100269	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	110853695	rs114047868	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	110855838	rs370484602	T	G	1077.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=59.65;MQRankSum=-0.104;QD=22.45;ReadPosRankSum=-0.490;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr13	110856094	rs7327728	A	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	110859069	rs9588116	G	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	110859316	.	G	GA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.706;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr13	110859690	rs598819	A	G	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	110861785	rs645114	C	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	110862268	rs2166207	A	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	110863974	rs3832900	CAAAAT	C	1992.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	111077266	rs138453725	C	T	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	111082157	rs3929758	C	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	111082318	rs74124318	G	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	111083076	rs116714390	G	A	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr13	111091157	rs9521759	C	A	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	111098017	rs4771680	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	111098226	rs4103	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	111098338	rs7988186	A	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	111099057	rs45612833	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	111099361	rs74124349	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	111102183	rs34734302	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	111109157	rs28502737	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	111109540	.	C	G	179	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9998;HP=2;HapScore=2;MGOF=64;MMLQ=24;MQ=41.44;NF=9;NR=2;PP=179;QD=19.4337465952;SC=GGCTGATGCCCTGCGTCTGCG;SbPval=0.59;Source=Platypus;TC=17;TCF=14;TCR=3;TR=11;WE=111109548;WS=111109537;set=Platypus	GT:AD:AF:DP	1/1:6,11:0.65:17
chr13	111109575	.	TGATG	T	123.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=1.534;QD=15.47;ReadPosRankSum=1.465;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,1:0.12:8
chr13	111109580	.	CCCTGCGTCTGCGTGGGACCCCAGGCGTCCGTGGGGCTG	C	114.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=1.036;QD=11.47;ReadPosRankSum=1.534;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,1:0.10:10
chr13	111109618	.	G	C	1717	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=1;HapScore=1;MGOF=27;MMLQ=21;MQ=57.3;NF=55;NR=40;PP=1717;QD=18.4396969742;SC=CCGTGGGGCTGATGCCCTGCG;SbPval=0.66;Source=Platypus;TC=107;TCF=59;TCR=48;TR=95;WE=111109626;WS=111109608;set=Platypus	GT:AD:AF:DP	1/1:12,95:0.89:107
chr13	111109859	rs9515218	A	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr13	111109960	rs9515219	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	111110303	rs7319009	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	111110418	rs7325055	G	C	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr13	111110666	rs7326779	T	C	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.44;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	111110674	rs7325334	C	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	111111023	rs9521781	T	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	111111043	rs9521782	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	111111173	rs7990214	G	A	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr13	111111235	rs7990383	G	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	111114759	rs148511298	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	111115467	rs9521786	G	A	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	111115480	rs9515223	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	111117745	rs3803236	C	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	111118221	rs1983932	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	111118546	rs1927350	T	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	111118574	rs1927351	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	111118580	rs1927352	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.48;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	111118615	rs1927353	A	T	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	111119292	rs115480301	G	A	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111119296	rs3803232	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=43.61;SOR=2.372;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	111121444	rs9559813	C	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	111121465	rs118191562	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	111121483	rs9559814	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	111121717	rs9515229	A	G	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	111130226	rs9559818	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	111137167	rs1983930	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	111141960	.	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	111143755	rs413756	T	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	111144565	rs421177	C	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	111145427	.	TG	CA	863	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=2;MGOF=14;MMLQ=23;MQ=55.93;NF=11;NR=10;PP=863;QD=43.6413273744;SC=GACACCCCCATGGGTGAAATA;SbPval=0.27;Source=Platypus;TC=53;TCF=33;TCR=20;TR=21;WE=111145436;WS=111145424;set=Platypus	GT:AD:AF:DP	1/0:32,21:0.40:53
chr13	111147846	rs912946	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111153934	rs378601	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	111154058	rs439831	T	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	111154061	rs409858	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	111154160	rs2281968	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	111155363	rs406174	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	111155428	rs401316	C	T	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	111155711	rs4773198	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr13	111155773	rs438758	T	C	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	111155779	rs4773199	G	A	2419.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=-1.050;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr13	111156021	rs4773200	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	111156047	rs9284254	C	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	111156153	rs9301460	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr13	111156499	rs4771683	C	T	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	111156773	rs4771684	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	111176316	rs426453	T	C	7287.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr13	111176393	rs419244	A	G	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr13	111176519	rs375814	G	T	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	111277810	rs330561	C	A	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	111279797	rs55839400	A	G	2990.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.969;SOR=0.521;set=HC	GT:AD:AF:DP	1/1:3,119:0.98:122
chr13	111293585	rs10709696	TG	T	365.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	111294920	rs11414164	G	GC	11553.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr13	111298392	rs436462	A	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	111315299	rs4622384	T	C	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	111315405	rs7993933	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	111315489	rs2296659	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	111315506	rs376834	A	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	111319754	rs4628819	T	C	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr13	111319884	rs9521884	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	111353703	rs9588243	G	A	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	111368164	rs7338333	T	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	111932586	.	G	GT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=3.180;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr13	111955465	rs1555751	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	111968680	rs7991693	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	111973342	rs57775875	TG	T	1969.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.40;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	111980478	rs2479955	A	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	111992288	rs2253707	C	T	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	111992314	rs2253706	A	G	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	112278338	rs7992732	G	A	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	112297403	rs8000950	C	T	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	112324876	rs1105512	C	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr13	112723214	rs74131156	G	T	375.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	112723232	rs1056121	G	C	375.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	113032915	rs7324712	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	113052388	rs2296895	A	G	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr13	113052562	rs2296894	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	113053470	rs10816	T	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	113159187	rs7320173	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	113181415	rs9603905	G	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	113201846	.	ACGTGCATGGGAAAGT	A	700	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=35;MMLQ=21;MQ=64.36;NF=7;NR=0;PP=700;QD=106.142857143;SC=CGTGGGAAAGACGTGCATGGG;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=7;WE=113201868;WS=113201836;set=Platypus	GT:AD:AF:DP	1/1:1,7:0.88:8
chr13	113201879	rs41288620	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	113202667	rs9550139	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	113459433	rs58231944	G	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	113459558	rs57524430	G	A	62.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	113479820	rs368865	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	113487043	rs2297223	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	113496566	rs946006	C	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	113508537	rs11424633	A	AT	2152.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	113508839	rs9549573	G	C	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	113512004	rs7325522	C	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	113512331	rs9549575	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr13	113516971	.	G	GAATTCAGTGCAGCCCATGCAGTTTCCCAGCGGGGTCCATCACCACGTGCACAGT	1675.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=32.86;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	113516993	.	C	T	632	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=54;MMLQ=27;MQ=59.16;NF=11;NR=16;PP=632;QD=24.6952300943;SC=GCCCATGCAGCTTCCCAGCGG;SbPval=0.56;Source=Platypus;TC=27;TCF=11;TCR=16;TR=27;WE=113517001;WS=113516983;set=Platypus	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	113525952	rs1765767	A	G	367.96	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr13	113526278	rs58716281	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	113530287	rs61574741	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	113534907	rs9577174	T	C	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	113536467	rs36048052	G	A	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	113563351	rs2993328	A	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	113639862	rs2993287	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	113639869	rs3011543	A	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	113639872	rs3011542	A	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.01;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	113681120	.	TC	T	551.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	113717022	rs7982214	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.95;QD=24.99;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	113735390	rs494129	T	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	113738175	rs491455	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	113739518	rs546818	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	113740706	rs1745949	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	113741851	rs514181	C	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	113742805	rs7986589	C	G	8904.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr13	113743768	.	T	C	283	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=3;MMLQ=24;MQ=57.85;NF=10;NR=4;PP=283;QD=22.6979437534;SC=TCTCATCCAGTCCGTCCGGGT;SbPval=0.59;Source=Platypus;TC=14;TCF=10;TCR=4;TR=14;WE=113743776;WS=113743758;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	113744139	rs4907483	G	A	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr13	113748690	rs7327099	C	T	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	113749475	rs2146752	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	113771928	rs143425954	C	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	113792754	rs2251102	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	113792893	rs2026160	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	113801737	rs5960	C	T	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	113801843	rs2031184	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	113812962	rs2273971	G	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	113818708	rs3024731	A	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	113818817	rs150762485	T	TC	4088.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	113818900	rs564081	A	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	113833499	rs486407	G	A	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	113852425	rs546686	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	113854600	rs3751412	T	C	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	113854715	rs3751413	C	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	113862801	rs9549692	G	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	113888201	rs2146408	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	113889474	rs2287250	C	T	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	113891075	rs2287253	G	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	113899004	rs3932499	C	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	113900197	rs2302756	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	113917767	rs4907602	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	113951722	rs7983578	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	113965002	rs71706094	AT	A	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.665;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr13	113999027	rs11444762	C	CA	216.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	113999051	rs4406954	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	114098655	rs73579439	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	114107606	rs35745409	C	T	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	114112287	rs3814254	C	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	114128382	rs74378879	G	A	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr13	114138107	rs41288602	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	114144842	rs2490953	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	114150107	rs11164135	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	114155965	rs2490958	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	114175038	rs7319493	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	114175109	rs12430718	C	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	114188291	rs2260722	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	114201742	rs2259387	T	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	114202532	rs12428641	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr13	114202549	rs12431354	C	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	114202560	rs12429311	G	A	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	114202575	rs2259398	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr13	114240067	.	CTT	C,CT	355.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.479;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.419;SOR=2.066;set=HC	GT:AD:AF:DP	1/2:5,11,14:0.37,0.47:30
chr13	114303822	rs75187049	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	114304532	.	G	A	76	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=2;MGOF=5;MMLQ=27;MQ=60.0;NF=3;NR=1;PP=76;QD=27.6928031368;SC=TTCATGTTGCGTGAGAGGAAT;SbPval=0.68;Source=Platypus;TC=4;TCF=3;TCR=1;TR=4;WE=114304540;WS=114304522;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	114305791	rs59355831	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.15;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	114305791	.	ATT	GTC	399	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=8;NR=1;PP=399;QD=50.274208318;SC=AAAAAGCCCCATTGTTTCCCT;SbPval=0.65;Source=Platypus;TC=9;TCF=8;TCR=1;TR=9;WE=114305801;WS=114305781;set=Platypus	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	114305793	rs58430260	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	114312354	rs9285616	T	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	114312605	rs58459344	G	GA	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	114312606	rs58758822	T	G	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	114322289	rs9796035	A	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	114323889	rs57719047	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	114324195	rs116444315	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	114453605	.	C	CTGTGTGCACG	5586.73	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=45.05;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	114469434	rs68023809	G	A	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	114471900	rs9604527	C	T	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	114498362	rs28653123	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	114502416	rs7400029	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	114503915	rs9577890	CA	TG	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	114507703	.	C	G	162	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=3;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=7;NR=1;PP=162;QD=24.5964015684;SC=GCCGGGCCGGCGTTAGCTCCA;SbPval=0.65;Source=Platypus;TC=8;TCF=7;TCR=1;TR=8;WE=114507711;WS=114507693;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	114507836	rs7323732	A	G	12638.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	114507840	rs7332019	G	A	13252.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.182;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr13	114507965	rs9577888	C	T	19374.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,747:1.00:747
chr13	114508032	rs60580207	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	114508064	rs57377836	T	C	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	114526316	rs113146617	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	114526504	rs74118435	G	A	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	114531724	rs74118432	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr13	114549772	rs11841740	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	114550829	rs8191973	G	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	114620051	rs11259844	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	114623880	rs7399982	G	A	13048.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr13	114751359	rs10781677	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	114772913	.	CGGACACCACCTTACCCTTCTCCCCTCCTGCCCTGCT	C	2418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.95;ReadPosRankSum=-0.048;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:6,95:0.94:101
chr13	114772918	.	A	G	900	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=3;HapScore=1;MGOF=24;MMLQ=21;MQ=55.01;NF=31;NR=16;PP=900;QD=19.8887492031;SC=CCTGCCGGACACCACCTTACC;SbPval=0.48;Source=Platypus;TC=49;TCF=33;TCR=16;TR=47;WE=114772926;WS=114772908;set=Platypus	GT:AD:AF:DP	1/1:2,47:0.96:49
chr13	114772949	.	T	C	1373	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=24;MQ=57.9;NF=48;NR=28;PP=1373;QD=18.5233054283;SC=CCTGCCCTGCTGGACACCACC;SbPval=0.5;Source=Platypus;TC=77;TCF=49;TCR=28;TR=76;WE=114772957;WS=114772939;set=Platypus	GT:AD:AF:DP	1/1:1,76:0.99:77
chr13	114773126	rs9562086	C	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	114774813	rs6560943	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	114778593	rs7322518	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	114778859	rs146849472	C	CTCTCCCTCTCTCTG	1498.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	114780638	rs2274720	G	C	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	114780648	rs2274719	A	C	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	114780764	rs2274717	A	G	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	114783444	rs7986543	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	114784122	rs3818624	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	114784435	rs12875472	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	114787031	rs2274713	T	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	114792842	rs3829340	C	T	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	114793141	rs3751342	G	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	114793475	rs9590417	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	114795094	.	T	C	159	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=4;HapScore=4;MGOF=3;MMLQ=24;MQ=60.0;NF=8;NR=1;PP=159;QD=21.5301347275;SC=ACCTCTAAAATGGCGTCATCC;SbPval=0.65;Source=Platypus;TC=9;TCF=8;TCR=1;TR=9;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	114795107	.	GT	G	537	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=10;NR=5;PP=537;QD=38.0;SC=CGTCATCCTGGTGGGCCAGGA;SbPval=0.6;Source=Platypus;TC=15;TCF=10;TCR=5;TR=15;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	114795460	rs2274712	C	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	114795470	rs2274711	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	114839442	rs9525237	A	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	115000449	rs201328050	G	GGGCGGC	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	115000465	rs61973461	T	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	115000650	rs7331680	G	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	115000719	rs7331882	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	115002097	.	C	CT	35	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5001;HP=13;HapScore=2;MGOF=10;MMLQ=21;MQ=60.0;NF=0;NR=2;PP=35;QD=20.0;SC=CAGTTACCACCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=1;TCR=4;TR=2;WE=115002105;WS=115002087;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr13	115002305	rs8002514	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	115004524	rs17337828	AT	A	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	115004555	rs3831159	TGCATCTCTTAAATATGTGTGA	T	415.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	115004914	rs2296971	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr13	115004935	rs2296970	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	115010330	rs2039092	G	T	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	115015966	.	CA	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.927;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr13	115027462	rs7985356	T	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	115030714	rs8809	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	115037613	rs2274638	G	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	115039246	rs34154389	C	CAA	315.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.05;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	115047305	rs3752105	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr13	115047700	rs9590410	A	T	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr13	115048278	rs370166233	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	115064482	rs7999630	G	A	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr13	115064542	rs2701318	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	19685269	rs376856717	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	19685595	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.67;MQRankSum=0.431;QD=8.80;ReadPosRankSum=-1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	19889808	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=0.828;QD=3.29;ReadPosRankSum=-0.209;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr14	20201972	rs4391979	A	C	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:112,201:0.64:313
chr14	20202040	rs8011997	T	A	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:91,162:0.64:253
chr14	20215838	rs138993410	G	A	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-1.167;QD=4.28;ReadPosRankSum=-2.326;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:319,120:0.27:439
chr14	20216298	rs12896533	T	C	13574.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:332,633:0.66:965
chr14	20228080	.	A	T	2385.77	.	AC=1;AF=0.500;AN=2;DP=398;set=Intersection	GT:AD:AF:DP	0/1:257,133:0.34:390
chr14	20248828	rs2635535	C	T	8267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=1967;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.042;QD=4.24;ReadPosRankSum=1.688;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:1401,550:0.28:1951
chr14	20249176	rs2815960	G	A	5484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=1202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.363;QD=4.62;ReadPosRankSum=0.056;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:846,341:0.29:1187
chr14	20264675	rs201359566	C	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.921;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.394;QD=3.81;ReadPosRankSum=-0.226;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:144,47:0.25:191
chr14	20265560	rs115659051	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.091;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:63,41:0.39:104
chr14	20295510	rs7145672	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr14	20295763	rs11621854	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-3.224;QD=4.03;ReadPosRankSum=-0.749;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:156,54:0.26:210
chr14	20295778	rs11621883	CC	AG	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.510;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-4.477;QD=6.81;ReadPosRankSum=-0.963;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:126,36:0.22:162
chr14	20295834	rs2801164	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-6.116;QD=2.31;ReadPosRankSum=-0.352;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:144,32:0.18:176
chr14	20296004	rs2318279	C	T	10147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=1043;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-13.804;QD=9.79;ReadPosRankSum=-0.038;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:739,298:0.29:1037
chr14	20296010	rs17114261	G	C	10148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-13.357;QD=9.82;ReadPosRankSum=-0.353;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:738,296:0.29:1034
chr14	20296541	rs56930122	C	CAA	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.119;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:99,58:0.37:157
chr14	20296658	rs10140079	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr14	20344373	rs142226597	CTT	C	711.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=6.793;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.135;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr14	20344986	.	T	C	5317.77	.	AC=1;AF=0.500;AN=2;DP=971;set=Intersection	GT:AD:AF:DP	0/1:644,321:0.33:965
chr14	20389079	rs75017599	A	C	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:393,197:0.33:590
chr14	20403909	rs2792148	T	C	8639.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:184,409:0.69:593
chr14	20404736	rs2792146	G	A	6348.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:174,295:0.63:469
chr14	20404767	rs2792145	A	G	5031.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:115,234:0.67:349
chr14	20404874	rs2792144	C	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr14	20444490	rs11158071	C	T	16437.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr14	20470399	rs7493807	G	A	13344.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr14	20482471	rs12590785	C	T	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:146,152:0.51:298
chr14	20482998	rs7157076	T	C	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:260,199:0.43:459
chr14	20502707	.	T	C	5718.77	.	AC=1;AF=0.500;AN=2;DP=556;set=Intersection	GT:AD:AF:DP	0/1:260,280:0.52:540
chr14	20502921	rs2775236	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr14	20528161	rs114498179	C	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr14	20528359	rs1959630	G	T	15511.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr14	20642034	rs7143334	A	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr14	20665887	rs4981823	G	C	10575.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	20666175	rs55781225	C	CA	4557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.684;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.748;QD=7.35;ReadPosRankSum=0.749;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:367,253:0.41:620
chr14	20666587	rs139162797	TA	T	241	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr14	20692188	rs12891553	T	C	14996.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr14	20692291	rs34693535	C	T	14494.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr14	20692453	rs17211285	G	T	9460.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr14	20692574	rs17277221	T	C	11036.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr14	20692643	rs17277228	T	C	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	20692999	rs11851950	T	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	20698068	rs4981844	G	T	12255.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr14	20698239	rs1953558	T	C	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	20698298	rs1953559	T	G	11206.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr14	20698504	rs1953560	G	A	12005.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr14	20711852	rs17277270	C	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:99,89:0.47:188
chr14	20763388	rs61995497	C	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr14	20763446	rs1953551	T	C	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	20763716	rs72671250	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr14	20763824	.	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.950;QD=0.81;ReadPosRankSum=0.218;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr14	20767618	rs2318864	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,133:0.49:269
chr14	20767706	rs945459	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:72,49:0.40:121
chr14	20769870	rs3825766	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	20770036	rs3742945	T	C	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,67:0.39:174
chr14	20784121	rs74717577	AAGAG	A	632.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr14	20784718	rs1132644	G	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	20788652	rs11292211	TA	T	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	20815013	rs1713430	C	T	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:4,192:0.98:196
chr14	20815186	rs61026915	A	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=0.559;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	20818983	rs1760920	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	20819349	rs2459920	TT	AA	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr14	20820537	rs1760919	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	20820548	rs3093911	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.160;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr14	20822219	rs1713412	G	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr14	20822495	rs1713411	G	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr14	20823052	rs3093926	G	A	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:144,170:0.54:314
chr14	20823095	rs3093927	G	A	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:244,185:0.43:429
chr14	20824181	rs3093930	T	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:157,180:0.53:337
chr14	20824859	rs878156	T	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:72,99:0.58:171
chr14	20825321	rs10625811	T	TTTCAC	3147.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr14	20825323	rs200223594	T	G	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr14	20825362	rs3093939	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr14	20836582	rs8011749	C	T	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:184,197:0.52:381
chr14	20836716	rs8011960	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:217,191:0.47:408
chr14	20836916	rs8020335	G	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=1.194;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr14	20836923	rs10531088	GCACA	G,GCACACACA	1336.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;QD=33.42;SOR=2.049;set=HC	GT:AD:AF:DP	1/2:0,17,23:0.42,0.57:40
chr14	20837033	rs2104978	T	C	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr14	20837086	rs8004136	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:59,67:0.53:126
chr14	20837169	.	CTTT	C	774.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr14	20837188	rs368190943	CA	C	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr14	20837701	rs938886	G	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:109,80:0.42:189
chr14	20837994	rs61030625	G	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	20839262	rs59298133	G	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr14	20839530	rs58425542	G	A	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr14	20841104	rs78793842	C	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:85,124:0.59:209
chr14	20841313	rs1713448	G	A	5279.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:256,248:0.49:504
chr14	20842557	rs146231909	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr14	20842613	rs35165628	C	T	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:117,110:0.48:227
chr14	20843733	rs75239938	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=0.366;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	20844383	rs2228042	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:171,183:0.52:354
chr14	20845521	rs2229101	A	C	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:242,193:0.44:435
chr14	20846521	rs2297615	A	T	18384.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr14	20846729	rs10151816	G	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:116,81:0.41:197
chr14	20846927	rs35517499	C	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr14	20846950	rs8022805	C	T	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:128,131:0.51:259
chr14	20848718	rs142580077	ACAATAGTAAGTCT	A	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr14	20849169	rs2228039	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr14	20849854	rs12433941	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:132,116:0.47:248
chr14	20849940	rs12436041	G	A	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,107:0.50:214
chr14	20850093	rs1713456	C	T	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:287,233:0.45:520
chr14	20852029	rs1760904	A	G	9649.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr14	20852267	rs2228041	C	T	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:297,244:0.45:541
chr14	20852770	rs1713458	G	T	5759.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:295,287:0.49:582
chr14	20852817	rs1760903	G	A	12861.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr14	20854734	rs945011	A	G	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	20854856	rs144750938	AC	A	1198.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr14	20856327	rs76575764	C	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr14	20857600	rs111751048	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr14	20858944	rs4981171	T	C	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:182,141:0.44:323
chr14	20859013	rs872072	G	A	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr14	20859084	rs872073	T	C	8984.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr14	20859205	rs872074	C	T	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:331,300:0.48:631
chr14	20864049	rs2228026	A	G	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:83,91:0.52:174
chr14	20864720	rs77610051	G	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:116,93:0.44:209
chr14	20864995	rs75786003	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr14	20865008	rs4982042	C	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr14	20869019	.	A	AAATCGTTTTCAGT	268.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr14	20869101	rs80138238	G	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr14	20871645	rs8009925	C	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr14	20872101	rs112374310	A	C	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:228,221:0.49:449
chr14	20872656	rs17111211	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr14	20872863	rs6413437	A	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:2,254:0.99:256
chr14	20872881	rs1760898	G	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:120,84:0.41:204
chr14	20873524	rs3762146	A	G	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	20873795	rs111482622	A	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr14	20874411	rs61734876	T	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.906;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:126,82:0.39:208
chr14	20875973	rs1713438	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr14	20876189	rs10083536	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:200,143:0.42:343
chr14	20876253	rs1760897	A	G	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr14	20876621	rs41301453	G	A	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr14	20896857	rs7140768	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	20897064	rs7145318	C	T	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr14	20897676	rs1953225	T	C	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:154,157:0.50:311
chr14	20898058	rs79604136	G	C	7834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.642;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:510,439:0.46:949
chr14	20898308	rs17242648	C	T	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:207,223:0.52:430
chr14	20903349	rs1713408	T	C	16132.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr14	20903906	rs8017603	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:136,90:0.40:226
chr14	20916210	rs73587075	C	G	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:162,150:0.48:312
chr14	20916249	rs2275008	T	C	10024.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=1.138;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,385:1.00:386
chr14	20916958	rs938883	T	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:153,123:0.45:276
chr14	20916987	rs938882	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,111:0.47:238
chr14	20917442	rs938881	A	T	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	20919551	rs3120068	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	20919623	rs3120067	T	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	20919667	rs3120066	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	20919712	rs3120065	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	20920043	rs1320150	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	20920250	rs2275007	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	20920340	rs2275006	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	20920360	rs3215948	A	AG	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	20920435	rs114987529	C	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	20920749	rs1878703	C	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	20920763	rs7151461	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	20978510	rs113159396	C	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr14	20978531	rs2319198	G	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,84:0.54:157
chr14	20978721	rs79798350	A	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr14	20978888	rs75463308	C	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr14	20979022	rs2067648	G	A	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:183,157:0.46:340
chr14	21024605	rs8014474	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr14	21024619	rs1243647	A	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	21024786	rs12590446	A	G	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:151,105:0.41:256
chr14	21025203	rs111738679	T	G	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:119,127:0.52:246
chr14	21052259	rs1429539	T	C	10612.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr14	21052414	rs35818240	T	A	5072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.323;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:310,257:0.45:567
chr14	21052487	rs35238496	A	G	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:241,207:0.46:448
chr14	21074683	rs1243595	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	21108748	rs11621507	G	A	439.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=0.232;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	21108748	.	GC	AT	81	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=27;MQ=57.63;NF=3;NR=1;PP=81;QD=33.6169687156;SC=AGCTGAGATCGCGCCACTGCA;SbPval=0.68;Source=Platypus;TC=12;TCF=9;TCR=3;TR=4;WE=21108757;WS=21108741;set=Platypus	GT:AD:AF:DP	1/0:8,4:0.33:12
chr14	21108749	rs11621774	C	T	439.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.99;ReadPosRankSum=-0.310;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr14	21109141	rs17277522	C	T	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:161,196:0.55:357
chr14	21109170	rs11628297	T	A	10730.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr14	21109278	rs11627438	A	T	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:232,173:0.43:405
chr14	21109385	rs11622969	C	T	5087.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:263,255:0.49:518
chr14	21109671	rs11627574	A	G	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:172,146:0.46:318
chr14	21109726	rs11622794	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:193,122:0.39:315
chr14	21109859	rs11156622	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr14	21215600	rs17211691	A	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr14	21215692	rs10136680	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	21215718	rs75387363	G	A	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.865;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:65,55:0.46:120
chr14	21215728	rs10135976	G	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.37;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	21216219	rs80135347	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr14	21238318	rs3827905	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,106:0.50:213
chr14	21238322	rs3827906	C	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:106,111:0.51:217
chr14	21238767	rs3748339	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr14	21238798	rs3827907	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	21250366	rs7156801	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	21360216	rs2073342	C	G	9078.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr14	21387994	rs10459477	A	G	7679.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	21388266	rs3748340	G	C	18372.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr14	21388302	rs3748341	G	A	19693.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:1,760:1.00:761
chr14	21458131	rs2741733	G	A	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	21458320	rs147038155	CCCCG	C	11244.73	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:291,292:0.50:583
chr14	21460160	rs2741737	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	21460902	rs2741738	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr14	21463430	rs2741739	G	T	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	21463474	rs2783801	G	A	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	21467913	rs2234632	T	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr14	21486137	rs1243445	G	C	13227.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr14	21488046	rs1243448	G	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	21490090	rs77868865	C	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr14	21490125	rs1243449	A	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	21500395	rs1243462	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	21500411	rs3818613	C	A	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr14	21500426	rs1754340	G	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:76,102:0.57:178
chr14	21500455	rs3818615	T	A	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:110,122:0.53:232
chr14	21500541	rs35274235	T	TA	1892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=2.139;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:118,94:0.44:212
chr14	21500597	rs3818616	C	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr14	21501049	rs1952525	G	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	21501095	rs3748346	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	21501151	rs3748347	G	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr14	21501195	rs3748348	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr14	21502345	rs8007176	A	G	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.513;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:185,175:0.49:360
chr14	21503743	rs1243463	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	21503795	rs17242881	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr14	21504447	rs1243464	A	G	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	21511281	rs149636039	A	G	6502.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:390,334:0.46:724
chr14	21511391	rs144405763	C	T	10225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=1161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.038;QD=8.92;ReadPosRankSum=2.097;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:626,521:0.45:1147
chr14	21511458	rs1263872	G	C	37945.77	.	AC=2;AF=1.00;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	1/1:0,1027:1.00:1027
chr14	21511497	rs1243469	C	T	7770.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:433,403:0.48:836
chr14	21511629	rs139925219	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr14	21511652	rs112710361	C	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr14	21526044	rs12435011	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	21526079	rs12437266	C	T	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	21542037	rs4982405	C	T	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	21544056	rs7140850	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr14	21544842	rs11483416	T	TG	2188.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:127,91:0.42:218
chr14	21549893	rs7143633	G	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr14	21551058	rs1958395	G	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chr14	21551069	rs1958396	T	C	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	21555066	.	GA	G	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.436;QD=0.23;ReadPosRankSum=1.568;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr14	21555068	rs12891708	A	G	539.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.714;QD=3.33;ReadPosRankSum=-0.275;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:106,56:0.35:162
chr14	21555087	rs145744937	AAATC	A	3159.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:111,85:0.43:196
chr14	21556963	rs35186993	A	AT	2394.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:103,97:0.48:200
chr14	21558558	rs6571653	G	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr14	21560752	rs3841049	GGAGGCT	G	1088.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr14	21562560	rs7149011	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:132,116:0.47:248
chr14	21570273	rs745696	T	C	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:329,271:0.45:600
chr14	21570614	rs4982408	A	C	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	21571119	rs12432043	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.164;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr14	21571208	rs12880628	G	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr14	21623010	rs8007993	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	21623053	rs45468597	G	T	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:135,104:0.44:239
chr14	21623182	rs61755187	C	T	5816.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:275,290:0.51:565
chr14	21623290	rs7145814	T	C	13735.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr14	21623303	rs45603634	G	T	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:213,164:0.44:377
chr14	21623489	rs45462402	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:112,110:0.50:222
chr14	21623648	rs7161544	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:127,110:0.46:237
chr14	21623836	rs4982419	G	A	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr14	21624197	rs10135366	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr14	21762989	.	ATTTTTTTT	A	730.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=36.54;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	21770730	rs6571751	A	G	7558.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	21775816	rs8005773	G	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr14	21778717	rs72160728	AAAT	A	983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=3.009;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr14	21778792	rs1957414	T	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-2.820;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr14	21790040	rs10151259	G	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:105,87:0.45:192
chr14	21792811	rs9322965	G	A	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:177,180:0.50:357
chr14	21793236	rs7157052	G	A	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:79,104:0.57:183
chr14	21796784	rs3748361	G	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr14	21821821	rs3736824	A	C	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	21825924	rs3762156	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	21826718	rs3762157	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	21828520	rs927412	T	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	21829129	rs3762158	C	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	21829404	rs1543494	T	C	12012.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr14	21829470	.	C	CTT	363	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=1.563;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr14	21830635	rs1983768	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	21831052	rs10138699	T	C	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	21831112	rs10146717	G	A	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	21831692	rs10139379	T	A	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	21833147	rs2295866	G	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	21834815	rs66530934	C	CTTTT	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.38;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr14	21836400	rs8008670	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	21838160	rs2181125	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	21838781	rs4982445	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	21839918	rs115724597	A	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	21859536	rs3762159	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	21860360	rs1998332	G	A	11128.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	21861211	rs7152833	C	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	21864124	rs10134108	C	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	21869705	rs113076568	C	CT	1212.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:5,64:0.93:69
chr14	21871653	rs8022395	C	T	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	21874068	rs7155123	G	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=1.956;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	21900062	rs148678273	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr14	21929367	rs61752840	A	G	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:205,170:0.45:375
chr14	21930361	rs60977608	TA	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.329;QD=2.32;ReadPosRankSum=0.433;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr14	21930596	rs10143000	G	A	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:114,125:0.52:239
chr14	21936762	.	GA	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.781;QD=0.72;ReadPosRankSum=1.245;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr14	21950836	rs6571850	T	G	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr14	21955930	rs1061031	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=1.105;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr14	21960408	rs3737050	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr14	21960816	rs1060722	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr14	21960969	rs7617	G	A	5797.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:229,284:0.55:513
chr14	21967916	rs1139130	A	G	6122.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:358,327:0.48:685
chr14	21968619	rs1263790	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr14	21970091	rs1263792	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr14	21990342	rs200715579	T	G	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:113,135:0.54:248
chr14	21991626	rs1263810	C	G	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:315,224:0.42:539
chr14	21993498	rs1263811	G	A	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:154,148:0.49:302
chr14	22037905	rs8009501	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	22038450	rs11626669	G	A	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:168,158:0.48:326
chr14	22038525	rs11626693	G	T	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	22038659	rs17792778	T	C	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	22038915	rs4982462	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:72,85:0.54:157
chr14	22070146	rs10134340	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:158,112:0.41:270
chr14	22070355	rs199637760	T	C	4920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-12.722;QD=5.49;ReadPosRankSum=2.830;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:594,303:0.34:897
chr14	22070440	rs199812846	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.968;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=6.085;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-20.892;QD=0.17;ReadPosRankSum=-5.748;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:454,54:0.11:508
chr14	22070478	rs371337412	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.070;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=9.461;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-19.045;QD=1.67;ReadPosRankSum=-6.102;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:434,80:0.16:514
chr14	22070509	rs11157069	G	A	3786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=5.728;QD=6.07;ReadPosRankSum=2.350;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:413,211:0.34:624
chr14	22070595	rs35103338	AC	A	4077.73	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:474,160:0.25:634
chr14	22070696	.	T	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.191;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=23.757;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-11.627;QD=0.97;ReadPosRankSum=-7.563;SOR=2.628;set=HC	GT:AD:AF:DP	0/1:191,30:0.14:221
chr14	22070700	.	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=14.647;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-9.016;QD=0.82;ReadPosRankSum=-3.900;SOR=2.763;set=HC	GT:AD:AF:DP	0/1:177,12:0.06:189
chr14	22090208	rs8016939	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr14	22090832	.	CTA	C	214.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr14	22101945	rs4982475	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	22102374	rs12894405	T	C	9285.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	22102439	rs35963889	C	G	9000.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr14	22102592	rs10138694	T	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.29;QD=37.51;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	22102612	rs10138704	T	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	22102745	rs41314525	C	A	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:197,123:0.38:320
chr14	22111660	rs3748364	C	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:136,124:0.48:260
chr14	22133416	rs12717305	A	G	4513.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:240,234:0.49:474
chr14	22133648	rs2874103	G	A	5416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.955;QD=8.67;ReadPosRankSum=1.132;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:328,297:0.48:625
chr14	22133997	rs970382	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:95,114:0.55:209
chr14	22134245	rs12435524	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr14	22167296	rs6572018	G	C	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr14	22167504	rs7140191	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	22180452	rs35953321	A	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:112,107:0.49:219
chr14	22204911	rs3748366	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:112,102:0.48:214
chr14	22217356	rs2075477	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	22237127	rs760008	C	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	22279687	rs35761773	C	T	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.839;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:54,36:0.40:90
chr14	22279809	rs2856411	A	C	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr14	22279817	rs7156201	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:101,78:0.44:179
chr14	22293510	rs2178782	T	C	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	22293554	rs35339724	G	GC	4838.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	22309386	rs35372754	A	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr14	22314877	rs9635202	T	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr14	22314985	rs34825426	T	C	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:188,213:0.53:401
chr14	22315212	rs2075488	A	G	6976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.642;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.039;QD=8.74;ReadPosRankSum=1.633;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:408,390:0.49:798
chr14	22315296	rs33959352	C	T	5320.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:325,273:0.46:598
chr14	22320728	rs2017224	T	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr14	22321124	rs2017263	T	C	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:98,142:0.59:240
chr14	22321261	rs2017432	C	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=-0.316;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:45,61:0.58:106
chr14	22321269	rs2072609	T	C	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.30;ReadPosRankSum=0.110;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:30,40:0.57:70
chr14	22322168	rs760003	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr14	22322369	rs11626323	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr14	22322411	rs11629404	G	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr14	22322523	rs11629446	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr14	22322563	rs11620886	C	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr14	22322690	rs12878216	G	A	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:295,316:0.52:611
chr14	22322794	rs12879611	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr14	22322856	rs12884453	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr14	22337119	rs909075	G	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr14	22337181	rs909076	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr14	22337393	rs876093	G	A	11175.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr14	22356081	rs12885687	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	22356225	rs17197550	G	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,55:0.41:134
chr14	22356551	rs10483261	T	C	3933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.778;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:167,196:0.54:363
chr14	22362971	rs2075481	A	G	6730.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:304,328:0.52:632
chr14	22363080	rs12895616	T	A	11338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-2.377;QD=18.99;ReadPosRankSum=-0.372;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:301,296:0.50:597
chr14	22363084	rs12890675	C	G	11421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-1.964;QD=19.26;ReadPosRankSum=-0.662;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:296,297:0.50:593
chr14	22392845	rs17112255	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr14	22409532	rs3045130	TC	T	833.50	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.462;QD=17.73;ReadPosRankSum=0.372;SOR=2.753;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr14	22409534	rs374912343	TCTCTC	T	310.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=8.253;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.960;QD=6.61;ReadPosRankSum=1.104;SOR=2.342;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr14	22409571	rs2178779	A	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	22409620	rs17112412	T	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:140,128:0.48:268
chr14	22409771	rs4982531	A	G	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	22433866	rs17182972	C	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:115,118:0.51:233
chr14	22466017	rs2280763	T	C	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	22470693	rs5807105	T	TA	6479.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.40;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	22470894	rs200273819	G	GA	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	22470913	rs34215246	CT	C	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr14	22509188	rs4982545	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	22539108	rs2272547	C	T	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	22539116	rs2272548	G	A	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	22565073	rs12897143	G	A	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	22573582	rs2075498	A	C	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	22580570	rs1040301	C	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	22580623	rs1040302	G	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=0.577;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr14	22591988	rs2272550	C	A	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:268,204:0.43:472
chr14	22600863	rs3811291	G	A	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:132,113:0.46:245
chr14	22616554	rs34355797	C	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr14	22636774	rs34504645	A	T	5634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=-0.091;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:176,148:0.46:324
chr14	22636774	.	AGG	TGC	1907	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=1;MGOF=12;MMLQ=24;MQ=59.92;NF=32;NR=40;PP=1907;QD=27.2287204842;SC=GGAGAACAGAAGGGTCATGAA;SbPval=0.69;Source=Platypus;TC=167;TCF=80;TCR=87;TR=72;WE=22636790;WS=22636764;set=Platypus	GT:AD:AF:DP	0/1:95,72:0.43:167
chr14	22636776	rs34544774	G	C	5634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=-0.097;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:176,147:0.46:323
chr14	22670528	rs150537449	G	T	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.005;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:184,171:0.48:355
chr14	22670643	rs2075495	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr14	22690209	rs2272551	A	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	22694777	rs2242544	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr14	22694926	rs2075496	C	T	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	22695084	rs4982579	C	T	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	22695128	rs12889091	A	G	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	22733490	rs7147374	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr14	22733655	rs7145658	G	C	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=-0.503;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:72,76:0.51:148
chr14	22733655	.	GCT	CCC	1337	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=24;MQ=60.0;NF=23;NR=21;PP=1337;QD=31.6015426105;SC=TGAGCACTCTGCTGCTGCTCC;SbPval=0.58;Source=Platypus;TC=90;TCF=47;TCR=43;TR=44;WE=22733665;WS=22733645;set=Platypus	GT:AD:AF:DP	1/0:46,44:0.49:90
chr14	22733657	rs7152255	T	C	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=-0.324;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:72,75:0.51:147
chr14	22733694	rs7147116	C	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr14	22733758	rs7145836	G	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr14	22733893	rs12589879	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr14	22739862	rs2075500	A	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,84:0.50:169
chr14	22740245	rs2075501	A	G	5591.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:182,172:0.49:354
chr14	22740270	rs2075502	G	A	4626.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:135,126:0.48:261
chr14	22749282	rs2075503	G	C	3928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=17.46;ReadPosRankSum=-1.480;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:124,101:0.45:225
chr14	22749287	rs34411203	T	A	3988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.675;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.540;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-1.050;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:140,111:0.44:251
chr14	22772123	rs2009858	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,96:0.47:204
chr14	22772136	rs1000036	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:137,114:0.45:251
chr14	22892139	rs75422358	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr14	22924288	rs10129863	C	T	4146.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:248,217:0.47:465
chr14	22924531	rs760020	C	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	22942890	rs2254272	G	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	22947814	rs227858	G	A	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	22948471	rs227859	T	C	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr14	22952088	rs227861	G	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:155,117:0.43:272
chr14	22961867	rs111375426	G	A	3367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=3.526;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:198,178:0.47:376
chr14	22962061	rs111544266	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	22963632	rs11372266	G	GC	352.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	22964840	rs137998884	T	TG	3406.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	22965118	rs11334443	TC	T	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	22965144	rs11334442	AC	A	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	22966872	rs111869233	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	22972622	rs226990	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr14	22972742	rs2170810	G	A	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:204,149:0.42:353
chr14	22972783	rs5807141	AC	A	11490.73	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,329:0.99:331
chr14	22972815	rs2170811	C	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:126,95:0.43:221
chr14	22972844	rs5020726	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,54:0.39:138
chr14	22973923	rs4343183	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr14	22973960	rs4343184	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	22974041	rs4343185	T	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr14	22974150	rs11324184	TC	T	11254.73	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr14	22974256	rs3811207	A	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr14	22975700	rs969914	T	G	3465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.236;QD=11.48;ReadPosRankSum=-0.796;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:130,172:0.57:302
chr14	22975728	rs3794450	G	A	2025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.355;QD=10.34;ReadPosRankSum=-0.328;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:93,103:0.53:196
chr14	22975755	rs3794451	T	C	1516.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.508;QD=15.02;ReadPosRankSum=-1.034;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chr14	22975756	rs112338851	G	GCACACACACACACA	1192.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.715;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr14	22976559	rs1872160	A	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr14	22976790	rs170543	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr14	22978335	rs226997	C	T	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,74:0.44:167
chr14	22978451	rs11443893	G	GC	4396.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	22978516	rs226998	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr14	22978577	rs226999	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	22979833	rs11410906	C	CA	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.818;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr14	22979847	rs5807144	G	GA,GAA	1211.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-1.194;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:14,43,28:0.51,0.33:85
chr14	22982069	rs11444527	A	AG	463.90	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr14	22984499	rs227027	C	T	1069.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	22984500	rs144430862	G	GGTT	1060.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	22984809	rs111713644	T	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr14	22985463	rs227029	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr14	22985487	rs11453171	A	AC	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	22987753	rs112991145	G	T	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-1.867;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr14	22987753	.	GAG	TAT	536	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=21;MMLQ=23;MQ=59.8;NF=12;NR=7;PP=536;QD=31.0246249927;SC=GGGGAAAGCTGAGCTGTTAGG;SbPval=0.73;Source=Platypus;TC=50;TCF=29;TCR=21;TR=19;WE=22987763;WS=22987743;set=Platypus	GT:AD:AF:DP	0/1:31,19:0.38:50
chr14	22987755	rs113253287	G	T	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-2.132;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr14	22988022	rs227009	C	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr14	22988748	rs227010	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22990930	rs11380759	A	AT	6928.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	22993278	rs5807151	A	AG	3457.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	22997524	rs227024	A	G	10021.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr14	22998590	rs5807161	AG	A	4990.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	22998619	rs5807162	AC	A	4199.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	22999179	rs11412657	T	TC	4794.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	22999202	rs11412658	A	AG	6699.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	23000062	rs227003	T	C	7622.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	23000185	rs227004	C	T	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr14	23001026	rs7149508	C	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr14	23001388	rs227006	T	A	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	23002265	rs11289756	GC	G	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	23002415	rs111519765	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:192,136:0.41:328
chr14	23005041	rs5807163	A	AG	11041.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	23006406	rs1263635	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr14	23006663	rs11396434	G	GC	2026.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	23006674	rs1154157	G	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	23009291	rs1263637	G	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	23011039	rs60911156	GT	G	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	23012133	rs79064020	G	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:102,68:0.40:170
chr14	23012178	rs113817685	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:89,55:0.38:144
chr14	23012926	rs11627600	T	C	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr14	23013973	rs12433098	G	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr14	23014062	rs1263641	G	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	23014148	rs1263642	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.250;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr14	23018665	rs1263653	C	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr14	23019657	rs1263658	C	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr14	23020489	rs371247	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr14	23020688	rs11462449	G	GC	18676.73	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr14	23020820	rs5807168	G	GC	21558.73	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr14	23020825	rs3699	G	C	21599.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr14	23020919	rs3700	C	T	7381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=-1.906;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:204,191:0.48:395
chr14	23020919	.	CGG	TGC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=3;MGOF=31;MMLQ=26;MQ=60.0;NF=45;NR=62;PP=2944;QD=20;SC=CTCTAGGTCCCGGAGAATGTT;SbPval=0.62;Source=Platypus;TC=219;TCF=96;TCR=123;TR=107;WE=23020929;WS=23020909;set=Platypus	GT:AD:AF:DP	0/1:112,107:0.49:219
chr14	23020920	rs79317848	G	A	4280.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:192,205:0.52:397
chr14	23020921	rs3701	G	C	7381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.78;ReadPosRankSum=-1.787;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:203,190:0.48:393
chr14	23020970	rs3702	G	T	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:184,166:0.47:350
chr14	23026044	rs12888408	C	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.032;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	23026369	rs33982989	C	CG	700.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	23026438	rs12887841	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr14	23044002	rs7621	G	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr14	23058084	rs1051101	A	G	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:111,102:0.48:213
chr14	23072194	rs8023110	G	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr14	23074899	rs1242924	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr14	23078810	rs72677597	A	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:116,119:0.51:235
chr14	23078904	rs72677598	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr14	23078969	rs140776429	C	CT	70.84	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr14	23079730	rs1242933	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	23102626	rs11846290	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr14	23102784	rs1753429	A	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:122,111:0.48:233
chr14	23102882	rs1681596	C	A	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,88:0.46:190
chr14	23102896	rs1681597	A	G	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:98,88:0.47:186
chr14	23102969	rs1753430	G	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	23103040	rs3829405	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:110,91:0.45:201
chr14	23103282	rs3751481	T	C	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:273,274:0.50:547
chr14	23103347	rs3751482	T	C	11115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=1.050;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:250,285:0.53:535
chr14	23103354	rs3751483	AC	GT	11266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.092;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.18;ReadPosRankSum=1.930;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:248,284:0.53:532
chr14	23103743	rs56305436	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr14	23235821	rs73586409	T	C	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:265,262:0.50:527
chr14	23236524	rs8572	C	T	5915.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:302,303:0.50:605
chr14	23239880	rs1957502	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr14	23242828	rs1061040	T	C	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr14	23245252	rs3829406	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr14	23245259	rs77504594	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:74,72:0.49:146
chr14	23249327	rs11568430	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr14	23286343	rs10130537	T	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.049;QD=18.94;ReadPosRankSum=0.107;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr14	23286350	rs111507412	T	TATTTTTTA	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.506;QD=20.36;ReadPosRankSum=0.377;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	23286528	rs150800938	TTTTTA	T	512.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr14	23299135	rs1135641	G	T	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:119,115:0.49:234
chr14	23299286	rs4982685	T	C	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:214,223:0.51:437
chr14	23300095	rs9646148	T	G	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:124,136:0.52:260
chr14	23302585	rs12050397	T	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr14	23306048	rs1042703	C	T	9854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=1151;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.420;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:624,511:0.45:1135
chr14	23311042	rs17879412	CT	C	637.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr14	23311044	rs57542488	T	C	646.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr14	23312869	rs2236305	G	T	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.273;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=6.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=-0.323;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:74,66:0.47:140
chr14	23312875	rs2236306	G	C	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.187;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=0.002;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:89,80:0.47:169
chr14	23312923	rs2236307	T	C	6122.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:232,293:0.56:525
chr14	23313975	rs17879806	C	T	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:170,210:0.55:380
chr14	23314675	rs911912	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	23315331	rs743257	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	23342735	.	C	CT	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DP=396;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.044;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:199,73:0.27:272
chr14	23354066	rs8014119	G	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:273,258:0.49:531
chr14	23375657	rs75198523	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:143,87:0.38:230
chr14	23391913	rs8007089	T	C	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr14	23392431	rs181650384	G	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr14	23396756	rs34122546	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr14	23397409	rs11538391	G	A	6538.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:436,348:0.44:784
chr14	23415990	rs11414358	C	CT	203.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.778;QD=4.74;ReadPosRankSum=0.208;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr14	23424120	rs7150114	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr14	23424186	rs2016392	A	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr14	23456315	rs1043675	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr14	23457033	rs10147573	T	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	23457055	rs116754674	C	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.362;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:46,48:0.51:94
chr14	23457229	rs111774191	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr14	23459468	rs114425558	T	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr14	23465032	rs59127513	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	23504238	rs4144360	G	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	23511357	rs4981456	G	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr14	23511402	rs112712793	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr14	23512343	rs57362684	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr14	23518789	rs145152245	G	T	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-0.155;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr14	23518791	rs2295689	A	G	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.86;ReadPosRankSum=-0.034;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr14	23523244	rs11625828	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr14	23524137	rs11418548	T	TG	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr14	23530908	rs56402910	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr14	23532865	rs57315948	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr14	23548783	rs148403158	A	AGAACGT	12302.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr14	23549319	rs1885097	A	G	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:87,92:0.51:179
chr14	23549379	rs941719	C	G	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	23549785	rs3811182	T	C	15083.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr14	23550126	rs4982727	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr14	23550887	rs717984	C	A	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	23559364	rs73598429	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr14	23566913	rs35065609	C	G	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:230,220:0.49:450
chr14	23570824	rs17126608	T	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:129,135:0.51:264
chr14	23571390	rs17126612	C	T	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.988;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:218,218:0.50:436
chr14	23571671	rs4444236	A	T	11541.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr14	23571771	rs2236136	C	G	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr14	23572776	rs148655160	T	TAAAAC	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr14	23574095	.	GGCA	G	986	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=24;MQ=59.76;NF=1;NR=20;PP=986;QD=47.2380952381;SC=GACTAGTGGCGGCAGCAGCAG;SbPval=0.91;Source=Platypus;TC=60;TCF=7;TCR=53;TR=21;WE=23574105;WS=23574085;set=Platypus	GT:AD:AF:DP	0/1:39,21:0.35:60
chr14	23574112	rs57331962	CA	C	1218.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.718;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:155,76:0.33:231
chr14	23574114	rs55686792	GCA	G	1215.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.917;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:157,76:0.33:233
chr14	23574116	.	A	G	531	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=24;MQ=59.79;NF=18;NR=24;PP=531;QD=13.4707431559;SC=CAGCAGCAGCAGCAGCAGCAG;SbPval=0.67;Source=Platypus;TC=101;TCF=46;TCR=55;TR=42;WE=23574124;WS=23574106;set=Platypus	GT:AD:AF:DP	0/1:59,42:0.42:101
chr14	23596320	rs761874	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr14	23598849	rs7157207	T	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr14	23598952	rs7157021	A	G	7044.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:198,199:0.50:397
chr14	23598976	rs17183863	G	A	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:161,166:0.51:327
chr14	23607246	rs1015089	C	A	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.228;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:92,70:0.43:162
chr14	23609916	rs10151002	A	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	23612489	rs2273394	C	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	23624583	rs8011016	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr14	23727902	rs35193725	CTT	C	2194.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.048;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=0.973;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:9,70:0.89:79
chr14	23727919	rs8015556	T	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr14	23729750	rs2064483	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:113,105:0.48:218
chr14	23731745	rs17128209	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr14	23732091	rs11625337	AT	GC	11657.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,456:1.00:458
chr14	23732300	rs34260336	G	GT	458.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr14	23733725	rs3811180	C	T	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	23733978	rs59984693	GT	G	1150.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	23734023	rs59063249	C	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-1.669;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr14	23734032	rs11628689	T	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	23734037	rs5807215	T	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	23738934	rs202210969	G	GA	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.630;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr14	23738971	rs371145434	CCT	C	921.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr14	23744800	rs148005528	ACAT	A	1118.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr14	23744826	rs67447855	TTCC	T	1162.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr14	23745533	rs10131813	C	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:91,109:0.55:200
chr14	23745723	rs11844797	G	A	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:132,149:0.53:281
chr14	23746035	rs17128364	A	G	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:131,123:0.48:254
chr14	23768700	rs28373872	A	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr14	23770545	.	C	G	563.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr14	23777374	rs910332	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	23777843	rs79308318	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr14	23789096	rs10640563	C	CTT	4888.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	23790511	rs146329539	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	23792019	rs8020117	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	23792348	rs147784654	G	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr14	23794324	rs13244	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	23794558	rs376203495	TA	T	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.696;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr14	23816998	rs12896494	T	C	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr14	23826819	rs2231810	C	T	3989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=2.589;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:122,105:0.46:227
chr14	23826822	rs2231809	C	T	3995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=3.330;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:121,104:0.46:225
chr14	23828250	rs34060515	TC	T	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr14	23829164	rs2231805	G	A	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:117,161:0.58:278
chr14	23830042	rs2231798	T	C	5979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=-0.487;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:128,157:0.55:285
chr14	23830048	rs2231797	T	G	5807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.35;ReadPosRankSum=-0.131;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:122,150:0.55:272
chr14	23842040	rs7145551	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr14	23844979	rs79877597	C	A	7785.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:395,386:0.49:781
chr14	23845244	rs3811178	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr14	23847939	rs116646254	A	C	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:205,145:0.41:350
chr14	23848311	rs723840	C	T	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:197,199:0.50:396
chr14	23848606	rs192189914	C	T	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:197,215:0.52:412
chr14	23851874	rs178636	A	G	3019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=0.417;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:55,81:0.60:136
chr14	23851882	rs10135780	C	A	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.23;ReadPosRankSum=1.433;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:47,70:0.60:117
chr14	23852651	rs35182223	T	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr14	23853629	rs8006357	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr14	23854324	rs178638	A	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.599;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr14	23854352	rs178639	A	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr14	23855569	rs178640	A	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr14	23855849	rs2071634	C	T	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:101,120:0.54:221
chr14	23857517	rs111638554	G	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr14	23858271	rs193922652	AG	A	3436.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:5,127:0.96:132
chr14	23861811	rs365990	A	G	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:139,114:0.45:253
chr14	23865885	rs452036	G	A	8347.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:403,426:0.51:829
chr14	23866713	rs412768	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	23869714	rs28730776	G	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr14	23869779	rs57166503	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr14	23871999	rs17091623	C	T	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:178,140:0.44:318
chr14	23872666	rs434273	T	C	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr14	23874117	rs440466	T	C	17400.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr14	23875069	rs145168479	AG	A	1407.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr14	23876486	rs28730780	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr14	23881909	rs7142503	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr14	23882144	rs2284651	T	C	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	23882186	rs7149517	T	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	23884803	rs201863195	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr14	23885450	rs7140196	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,82:0.48:170
chr14	23885997	rs3729828	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	23887645	rs7159367	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	23888323	rs34598192	T	TG	6435.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:188,191:0.50:379
chr14	23888605	rs45469698	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr14	23888665	rs2277475	A	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr14	23888858	rs45619332	CG	C	1742.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr14	23892645	.	AACACACACAC	A,AACACAC	3239.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=6.124;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.59;MQRankSum=0.637;QD=28.17;SOR=1.643;set=HC	GT:AD:AF:DP	1/2:5,67,43:0.58,0.37:115
chr14	23892713	.	TAG	T	866	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=45;MMLQ=27;MQ=60.08;NF=16;NR=29;PP=866;QD=20.2;SC=TGGGCACAGATAGACATGGCA;SbPval=0.76;Source=Platypus;TC=127;TCF=52;TCR=75;TR=45;WE=23892722;WS=23892703;set=Platypus	GT:AD:AF:DP	1/0:82,45:0.35:127
chr14	23892888	rs7157716	A	G	8932.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	23892950	rs7157087	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr14	23897996	rs3729814	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr14	23898994	rs2231126	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr14	23899027	rs735711	C	T	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr14	23899120	rs34803781	G	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:108,116:0.52:224
chr14	23899160	rs202199570	G	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr14	23899725	rs3729810	A	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	23900794	rs2069542	G	A	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr14	23901581	rs114763452	G	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr14	23902753	rs2069540	G	A	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	23924704	rs2331984	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	23924744	.	T	TAA	584.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr14	23924767	rs60519724	AT	A	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23924818	rs8005802	C	A	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	23924830	rs10131038	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	23938813	rs8015781	A	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	23939927	rs5807217	GT	G	86.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;MQRankSum=0.157;QD=10.78;ReadPosRankSum=1.534;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	23940081	rs1028587	A	G	2128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=1.014;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:74,58:0.44:132
chr14	23940086	rs1028588	A	G	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	23940089	rs3215682	AC	A	2182.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,60:0.43:139
chr14	23944514	rs2236261	C	A	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:125,130:0.51:255
chr14	23944723	rs146012298	A	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	23945366	rs2295706	A	G	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:215,154:0.42:369
chr14	23946836	rs202002407	AT	A	1455.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr14	23947199	rs74039338	G	C	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.470;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:140,154:0.52:294
chr14	23947374	rs1956950	G	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	23991105	rs223122	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	23994517	rs4982766	A	G	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:190,171:0.47:361
chr14	23994567	rs116043865	C	T	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:179,164:0.48:343
chr14	23996266	rs76098996	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr14	24000605	rs116607391	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr14	24000990	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=5.264;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.608;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:110,25:0.19:135
chr14	24004628	rs76747248	C	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr14	24029195	rs75443528	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr14	24030810	rs34987563	G	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:114,121:0.51:235
chr14	24033645	rs73589291	A	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr14	24040428	rs61739610	T	C	8675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.577;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:465,461:0.50:926
chr14	24044714	rs74973233	C	A	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:190,155:0.45:345
chr14	24403717	rs8015308	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:120,69:0.37:189
chr14	24408679	rs77147457	G	A	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.421;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:63,59:0.48:122
chr14	24408866	rs1885810	G	A	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	24410092	rs8003627	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	24410262	rs58941536	C	G	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	24410417	rs57901513	A	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	24422733	rs1951736	A	G	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	24422778	rs3049857	C	CGCTTTGA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	24422795	rs1951737	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	24422915	rs78299733	T	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	24422936	rs112883733	C	G	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	24422946	rs113357631	A	ACT	12833.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	24422995	rs4457918	T	G	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr14	24423007	rs17099455	G	A	8926.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	24423090	rs2273944	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	24424367	rs12147221	G	A	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	24429194	rs79275197	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.68;QD=24.96;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	24429239	.	C	CGG	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=68.779;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.365;SOR=5.890;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr14	24434860	.	T	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.60;MQRankSum=-1.195;QD=3.98;ReadPosRankSum=-0.084;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr14	24435308	rs138982419	C	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	24437922	rs61999779	A	C	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-9.818;QD=6.20;ReadPosRankSum=6.900;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:238,142:0.37:380
chr14	24439200	rs61999782	C	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=2.721;QD=8.29;ReadPosRankSum=0.076;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr14	24458162	rs2273946	G	C	16564.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr14	24459475	rs61729875	G	T	3934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.373;QD=18.47;ReadPosRankSum=-0.509;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:107,106:0.50:213
chr14	24459475	.	GGC	TGT	2277	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=58.46;NF=24;NR=39;PP=2277;QD=36.9915535692;SC=ATGTGGACCAGGCGGTGGCCA;SbPval=0.54;Source=Platypus;TC=121;TCF=46;TCR=75;TR=63;WE=24459485;WS=24459465;set=Platypus	GT:AD:AF:DP	0/1:58,63:0.52:121
chr14	24459477	rs61729874	C	T	3934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.389;QD=19.10;ReadPosRankSum=-0.630;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:103,103:0.50:206
chr14	24470167	rs144805644	G	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:202,149:0.42:351
chr14	24470509	rs62000760	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr14	24476433	rs148889809	C	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.829;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=6.361;MLEAC=1;MLEAF=0.500;MQ=46.92;MQRankSum=-4.818;QD=0.98;ReadPosRankSum=-1.990;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:124,20:0.14:144
chr14	24505614	rs8006288	A	G	8684.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=25.92;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr14	24505722	rs8005834	C	G	21802.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=26.11;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,835:1.00:835
chr14	24507003	rs28599797	A	C	12574.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=42.06;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	24507010	rs12587718	C	A	11849.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=45.93;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	24512997	rs200005487	CA	C	701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.344;QD=8.26;ReadPosRankSum=-0.542;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:23,62:0.73:85
chr14	24517467	rs115165742	T	G	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:213,167:0.44:380
chr14	24517602	rs62000821	A	T	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr14	24517983	rs57000189	T	G	14686.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr14	24518562	rs370423452	A	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	24519959	rs6573541	T	C	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	24522821	rs9972282	C	T	2949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.757;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:173,153:0.47:326
chr14	24522829	rs7160909	C	T	3555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=2.637;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:174,184:0.51:358
chr14	24523275	rs73603038	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr14	24523393	rs367708954	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:180,152:0.46:332
chr14	24523594	rs11158525	G	A	12804.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr14	24523735	rs35470491	AG	A	4051.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:179,151:0.46:330
chr14	24525634	rs4982851	C	A	10220.77	.	AC=1;AF=0.500;AN=2;DB;DP=1188;set=Intersection	GT:AD:AF:DP	0/1:644,537:0.45:1181
chr14	24525782	rs4982852	A	G	14182.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr14	24526287	rs7161473	G	C	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:304,244:0.45:548
chr14	24526593	rs12431698	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr14	24527538	rs7146262	G	A	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:111,140:0.56:251
chr14	24529260	rs58283036	C	T	7254.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:488,380:0.44:868
chr14	24529890	rs1951635	A	G	7271.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	24531789	rs960267	C	G	16123.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr14	24532411	rs1003761	G	A	5978.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:392,315:0.45:707
chr14	24532673	rs73603047	A	G	4981.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:292,249:0.46:541
chr14	24533318	.	AAAG	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=6.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=2.117;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr14	24533539	rs10146906	C	A	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	24534762	rs10150428	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr14	24538205	rs2070344	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr14	24542458	rs3742497	T	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.928;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr14	24543873	rs2025256	G	A	11337.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr14	24544248	rs2073350	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,65:0.55:119
chr14	24544289	rs144169460	TC	T	4213.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:137,159:0.54:296
chr14	24545366	rs2070342	T	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr14	24545835	rs45621931	C	T	8830.77	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:458,455:0.50:913
chr14	24545984	rs2070345	G	C	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:103,103:0.50:206
chr14	24550802	rs115991711	G	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:148,119:0.45:267
chr14	24563339	rs4982857	A	G	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	24567304	rs2759409	C	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr14	24567498	rs3021119	A	C	18223.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr14	24572495	rs2071586	G	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	24579527	rs3742498	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr14	24579740	rs10147702	A	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr14	24579755	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr14	24587515	rs2277480	G	A	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:78,76:0.49:154
chr14	24587545	rs2277481	A	G	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	24587639	rs3825584	G	A	3667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-0.426;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:264,203:0.43:467
chr14	24587667	rs17101367	C	T	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:235,167:0.42:402
chr14	24587680	rs78469280	G	A	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:140,211:0.60:351
chr14	24587795	rs2277482	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr14	24592529	rs78584440	C	A	7394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-0.685;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:439,380:0.46:819
chr14	24600390	rs927494	T	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr14	24601318	rs11574503	G	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	24606714	rs148185396	CCT	C	2652.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr14	24607039	rs141211049	AGTCAAACCATT	A	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.554;QD=9.87;ReadPosRankSum=0.248;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:68,29:0.30:97
chr14	24613439	rs17101478	G	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:111,127:0.53:238
chr14	24614361	rs7146672	T	G	11433.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr14	24615435	rs4575	T	C	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=1.220;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:78,77:0.50:155
chr14	24617238	rs2273913	C	T	33032.77	.	AC=2;AF=1.00;AN=2;DB;DP=1300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,1286:1.00:1286
chr14	24621218	rs74398461	G	A	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	24625031	rs4982862	C	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	24629709	rs74912998	C	T	12484.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr14	24635589	rs111232493	C	CT	633.94	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:7,39:0.85:46
chr14	24646406	rs10690822	G	GGAA	6559.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	24647087	rs67676621	C	T	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	24647814	rs1885711	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	24647957	rs1885710	C	T	21234.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr14	24648587	rs60565804	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	24649835	rs2273911	T	C	9097.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr14	24650047	rs7145633	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	24652107	rs34130297	A	AG	11690.73	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr14	24655292	rs66947172	A	C	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	24655731	rs17101801	T	C	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	24656415	rs72658755	A	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	24657407	rs6573607	T	G	4770.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.438;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-1.032;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,191:0.99:192
chr14	24664238	rs145572003	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:99,53:0.35:152
chr14	24676498	rs1270764	A	G	14655.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:2,574:1.00:576
chr14	24677343	rs34067514	TACG	T	12567.73	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	24683266	rs3215610	CA	C	7374.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:4,288:0.99:292
chr14	24683852	rs10136993	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	24686480	rs149980708	TTTG	T	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	24701598	rs71426837	AC	A	2054.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=12.515;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.825;QD=7.16;ReadPosRankSum=-0.074;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:154,133:0.46:287
chr14	24701602	rs111750853	C	T	2143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=11.231;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.011;QD=7.85;ReadPosRankSum=1.272;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:139,134:0.49:273
chr14	24701603	rs113067616	C	T	1720.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=10.380;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.748;QD=5.97;ReadPosRankSum=-0.192;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:186,102:0.35:288
chr14	24702897	rs7152342	T	C	13009.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr14	24706213	rs73589609	G	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	24706420	rs73589611	G	A	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	24709351	rs10141326	C	T	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:2,383:0.99:385
chr14	24709976	rs17102313	C	T	11612.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:1,448:1.00:449
chr14	24710534	rs58372573	T	TAGG	4745.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	24710819	.	CAA	C,CA	3080.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.89;MQRankSum=0.000;QD=22.32;ReadPosRankSum=1.238;SOR=0.377;set=HC	GT:AD:AF:DP	1/2:1,110,27:0.80,0.20:138
chr14	24711289	rs34113897	G	A	15680.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr14	24718379	rs41294726	TCTCCGGGAGCCCTGGACTCCCC	T	5545.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	24723798	rs8193033	C	T	13806.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr14	24723816	rs41293820	T	A	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:328,307:0.48:635
chr14	24724077	rs8193032	A	C	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	24731043	rs17102410	C	T	5826.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:373,305:0.45:678
chr14	24735624	rs2877612	A	G	6480.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:429,343:0.44:772
chr14	24735688	rs34973999	C	T	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:298,235:0.44:533
chr14	24735735	rs73589646	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:145,123:0.46:268
chr14	24736027	rs14193	G	A	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	24736961	rs729421	T	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	24737203	rs941502	A	T	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	24737653	rs148483964	GTGCACCCTTGAGAGGA	G	1637.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chr14	24739366	rs56395999	G	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:126,105:0.45:231
chr14	24739846	rs73589656	G	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr14	24760009	rs4568	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr14	24760255	rs2295310	C	T	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:152,133:0.47:285
chr14	24760361	rs34586111	G	T	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:283,225:0.44:508
chr14	24769849	rs113258190	A	AGAG	4746.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:141,130:0.48:271
chr14	24770039	rs73589696	A	T	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:72,106:0.60:178
chr14	24771137	rs4247000	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	24771256	rs4247001	T	C	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	24771551	rs139514138	A	G	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:187,209:0.53:396
chr14	24772204	rs373638907	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	24772829	rs4981501	A	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr14	24772922	rs4982895	C	T	11302.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr14	24774338	rs59084257	G	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,95:0.51:188
chr14	24780364	rs1950504	A	G	6011.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:484,327:0.40:811
chr14	24780434	rs1950503	C	T	6528.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:515,359:0.41:874
chr14	24788426	rs74038604	T	C	5763.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:349,304:0.47:653
chr14	24789104	rs57167065	C	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr14	24791136	rs4981504	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	24793600	rs1884366	G	A	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	24793647	rs6573722	T	C	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:66,88:0.57:154
chr14	24795231	rs67156008	CCA	C	6655.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:207,176:0.46:383
chr14	24795237	rs55970272	T	C	13787.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr14	24795258	rs11622863	C	T	13126.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:1,490:1.00:491
chr14	24795495	rs17256902	G	A	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:185,155:0.46:340
chr14	24795585	rs78289669	GT	G	604.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr14	24799287	rs1109153	A	T	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:112,139:0.55:251
chr14	24799578	rs12436417	C	G	2763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-0.410;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:62,76:0.55:138
chr14	24799586	rs74896270	G	A	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.09;ReadPosRankSum=0.701;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:58,65:0.53:123
chr14	24801635	rs1950502	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=-2.334;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	24802263	rs8003158	A	G	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	24803956	rs1124644	A	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	24805463	rs3212254	G	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:123,103:0.46:226
chr14	24806852	rs28620990	C	T	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr14	24806902	rs34106261	G	A	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:94,112:0.54:206
chr14	24807221	rs56337365	G	A	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:295,233:0.44:528
chr14	24807302	rs45537534	C	T	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:147,144:0.49:291
chr14	24808388	rs3181247	A	G	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:306,270:0.47:576
chr14	24808842	rs28379107	G	A	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:112,142:0.56:254
chr14	24808924	rs3212253	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr14	24808936	rs3212252	C	T	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr14	24808961	rs11844732	T	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:152,126:0.45:278
chr14	24809185	rs3212251	T	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.197;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:42,47:0.53:89
chr14	24809191	rs3212250	T	C	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=-0.091;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:35,45:0.56:80
chr14	24835017	rs11362560	CG	C	1426.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	24836954	rs138364808	GGGA	G	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.39;ReadPosRankSum=-0.652;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	24838621	rs1955915	C	T	17441.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:1,660:1.00:661
chr14	24839165	rs2228233	C	T	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:318,315:0.50:633
chr14	24844669	rs55851358	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr14	24845543	rs2228232	T	C	10998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=1233;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.105;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:645,573:0.47:1218
chr14	24845841	rs7149586	T	C	7452.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:305,356:0.54:661
chr14	24846757	rs2243891	A	G	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,333:1.00:334
chr14	24877351	rs370323848	G	T	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:158,151:0.49:309
chr14	24878485	rs12897153	G	A	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:240,216:0.47:456
chr14	24882312	rs2273634	G	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr14	24882373	rs3818251	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	24882440	rs4982909	G	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	24882805	rs10146609	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	24883720	rs143075190	GGGGTTTCCACAGA	G	620.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr14	24887462	rs3814811	T	C	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	24898547	rs76835855	G	C	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	24898558	rs2273632	C	T	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	24898693	rs2273631	C	T	12194.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.87;ReadPosRankSum=1.354;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:2,276:0.99:278
chr14	24898696	rs2273630	T	C	12145.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.65;ReadPosRankSum=1.451;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:2,270:0.99:272
chr14	24898751	rs2273629	G	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	24898780	rs5025771	C	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	24900209	rs1956905	C	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	24901276	rs7151995	G	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	24901844	rs2255591	A	G	11969.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr14	24905533	rs2277488	G	A	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr14	24905736	rs3216750	CT	C	8923.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	24906094	rs73593291	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	24906167	rs17103735	C	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:112,89:0.44:201
chr14	24906515	rs3742521	C	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	24906534	rs3742522	G	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	24909400	rs7159891	A	C	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,163:0.52:313
chr14	24909436	rs7157920	G	A	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:181,176:0.49:357
chr14	24911503	rs144944356	TGCGCCGCCCA	T	7743.73	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:305,210:0.41:515
chr14	24912169	rs73595020	A	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr14	24970942	rs4600392	A	G	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	24974621	rs5250	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr14	24974920	rs12100565	T	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr14	24975435	rs5249	G	T	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr14	24975509	rs1885108	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr14	24977501	rs5245	A	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr14	25043068	rs1885597	T	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	25044374	rs146382228	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr14	25044712	rs1957523	C	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:87,91:0.51:178
chr14	25045589	rs12878578	A	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	25077806	rs115161858	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr14	25078914	rs1957526	A	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	25102160	rs8192917	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	25287095	rs854398	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	25288212	rs71405872	A	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr14	25288227	rs749594	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr14	28102476	rs35170395	CTA	C	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	28102684	rs9672019	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	28733843	rs10135219	A	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.38;ReadPosRankSum=2.552;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr14	28733847	rs10145670	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=1.424;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr14	29247047	rs11316936	AT	A	60.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	29247285	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=3.803;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr14	29247384	rs78640311	A	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr14	29261309	rs56025822	A	AAAC	5979.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.037;QD=17.38;ReadPosRankSum=0.991;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:177,167:0.49:344
chr14	29261488	rs28498887	T	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:85,75:0.47:160
chr14	30047580	rs2273815	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr14	30066929	rs2230505	A	G	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:178,159:0.47:337
chr14	30066976	rs3783299	A	T	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:145,116:0.44:261
chr14	30068194	rs2273813	T	G	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:162,133:0.45:295
chr14	30095924	rs34249162	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.776;QD=3.48;ReadPosRankSum=1.991;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	30103441	rs1191599	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	30105830	rs139395396	TTA	T	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=2.270;QD=8.38;ReadPosRankSum=-0.310;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr14	30107578	rs2273809	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr14	30107634	rs2273808	T	C	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:109,112:0.51:221
chr14	30107738	rs2273807	C	T	4341.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:236,226:0.49:462
chr14	30107817	rs2273806	T	G	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:129,117:0.48:246
chr14	30125660	rs6571317	A	G	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=1.098;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:163,134:0.45:297
chr14	30135143	rs45548733	AT	A	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr14	31030021	rs7156057	T	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	31050215	rs58049	A	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	31059921	rs229251	G	T	8836.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	31060039	rs10148278	A	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	31066879	rs229259	C	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	31074612	rs150934449	CT	C	152.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	31091758	rs229143	T	A	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	31099738	rs229150	A	G	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	31103425	rs7149113	G	A	155.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	31103434	rs179287	A	G	94.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	31103891	rs229155	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	31107564	rs229162	T	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	31108977	rs2273521	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	31109275	rs2273520	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	31113310	rs11851205	G	C	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	31118967	rs8012494	T	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	31127167	rs230343	A	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	31139349	rs230364	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	31188414	rs11625381	A	G	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	31354374	rs12881068	A	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr14	31364099	rs34255465	C	CT	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.030;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:64,47:0.42:111
chr14	31380191	rs3736742	T	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr14	31380215	rs3830860	TA	T	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr14	31380429	rs8015764	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr14	31404277	rs9322868	T	C	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr14	31419988	.	T	C	641.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr14	31483761	rs179724	G	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr14	31483955	rs11156654	T	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr14	31535603	rs6571386	G	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	31538984	rs7155228	C	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	31542341	.	A	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.252;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr14	31542391	.	G	GA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-0.400;QD=8.26;ReadPosRankSum=0.423;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr14	31549745	rs11621299	T	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr14	31562102	rs61253324	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	31582380	rs1315794	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	31582526	rs2273483	T	C	9152.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr14	31597685	rs7157007	C	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	31625994	rs35553721	CA	C	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.522;QD=6.16;ReadPosRankSum=0.517;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,44:0.56:78
chr14	31642926	rs371587991	A	G	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:152,158:0.51:310
chr14	31647241	rs2274201	G	A	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr14	31771438	rs74720581	T	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=0.618;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr14	31793053	rs57656564	GAT	G	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr14	31806943	rs4595710	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	31809486	rs8012940	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	31809568	rs11408327	G	GA	2943.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr14	31813120	rs372920581	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr14	31819047	rs3736918	C	T	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr14	31819913	rs7158257	A	G	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	31819966	rs10602248	TTTTG	T	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr14	31828076	rs942907	A	C	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	31841162	rs5025288	T	C	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	31858025	rs3887865	C	T	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	31858209	rs7157977	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:137,94:0.41:231
chr14	31864300	rs7142126	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	31922408	rs34278949	G	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr14	31953254	.	A	AT	141.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	32020108	rs116134125	G	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:75,54:0.42:129
chr14	32032129	rs10143899	C	T	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	32123326	rs8004616	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	32123347	rs4981874	A	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	32142536	.	AAG	A	53	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=2;MGOF=16;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=53;QD=42.0;SC=ATTGTTCTAAAAGAGAGGATT;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=32142545;WS=32142526;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr14	32256954	rs7159193	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	32296018	rs1540425	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	32315901	rs8006872	A	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	32319233	rs10132352	G	A	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.874;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	32319241	rs8009753	T	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.581;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	32319488	rs8009002	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	32414145	rs1278926	C	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr14	32414204	rs145523048	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr14	32414386	rs1278927	C	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr14	32414463	rs1278928	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	32419235	rs1278941	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	32419331	rs1278942	C	T	8089.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	32419398	rs2236532	G	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	32419548	rs1278943	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	32438484	rs1952966	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr14	32487795	rs72321923	CAA	C	6859.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:190,179:0.49:369
chr14	32563640	rs8004384	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=25.22;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	33015014	rs7150894	G	A	16105.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr14	33046388	rs1950703	A	G	10867.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr14	33046471	rs768787	T	G	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:137,138:0.50:275
chr14	33147414	rs1950697	C	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	33147765	rs2273417	C	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	33165084	rs3742927	A	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	33165182	rs3742929	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	33201874	rs150374187	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr14	33201982	rs57844406	A	AT	94.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.87;ReadPosRankSum=0.157;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	33242863	rs2273163	T	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:156,139:0.47:295
chr14	33292743	rs2239647	A	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:117,80:0.41:197
chr14	33293022	rs1051694	A	G	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:297,250:0.46:547
chr14	33293122	rs1051695	A	G	5109.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:270,262:0.49:532
chr14	33408344	.	C	CACG	180.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr14	33408360	.	A	C	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.000;QD=10.35;ReadPosRankSum=2.155;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr14	33525317	rs35719018	G	GA	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr14	33836599	rs1609948	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	34047414	rs1958541	T	C	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:209,200:0.49:409
chr14	34149997	rs2297117	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	34204634	rs67458622	T	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr14	34243477	rs8019077	T	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	34263034	rs61497449	TAA	T	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.014;QD=9.63;ReadPosRankSum=0.230;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:50,48:0.49:98
chr14	34266717	rs138405917	G	A	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:113,103:0.48:216
chr14	34993863	.	A	ATGTGTGTGTGTG,ATGTGTGTGTGTGTG	2715.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;QD=43.11;SOR=4.091;set=HC	GT:AD:AF:DP	1/2:0,18,45:0.29,0.71:63
chr14	35002602	rs76593361	C	T	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	35037013	rs78342473	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	35050586	rs4403967	G	T	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	35062312	rs12432539	C	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	35073261	.	G	GA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.367;QD=2.53;ReadPosRankSum=-1.504;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr14	35075022	rs7151774	G	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	35099060	rs370236833	G	A	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	35099099	rs11847568	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	35099379	rs148739058	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	35182348	rs35515423	GA	G	591.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr14	35465784	rs2273158	T	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	35468893	rs12433712	T	A	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	35469991	rs8017191	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	35470019	rs8018114	T	C	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	35470049	rs8017225	G	A	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	35476673	rs28456062	G	A	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	35477785	rs1712351	G	A	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	35482797	rs2383692	A	G	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	35488309	rs17102982	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	35515606	rs4007475	TGG	T	1169.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	35550467	.	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.572;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr14	35576436	rs138669740	C	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	35591174	rs1056879	T	C	29216.77	.	AC=2;AF=1.00;AN=2;DB;DP=1123;set=Intersection	GT:AD:AF:DP	1/1:0,1112:1.00:1112
chr14	35591316	rs28365850	G	A	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	35592538	rs941653	C	G	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	35747918	rs17103147	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	35748036	rs10137019	C	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	35871407	rs1022714	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=8.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.530;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr14	35871441	rs70937092	A	AGTAAGCTATTAAAAAAAGG,ATTAAAAAAAGG	285.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	0/1:0.40:15
chr14	35872792	rs2233415	A	G	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:93,130:0.58:223
chr14	35872835	rs11569599	ACT	A	5621.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:137,147:0.52:284
chr14	36003399	rs116548851	C	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr14	36004075	rs1958260	A	G	6013.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	36044337	rs61622892	G	GA	250.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-1.315;QD=8.36;ReadPosRankSum=1.063;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr14	36096255	rs34349314	G	GA,GAA	1177.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=2.290;SOR=0.833;set=HC	GT:AD:AF:DP	1/2:24,40,36:0.40,0.36:100
chr14	36104841	rs79683035	A	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr14	36121087	rs35892589	CA	C	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	36144025	rs151016274	AG	A	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	36144060	rs146492551	G	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	36147012	rs1957830	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	36153177	rs2274068	T	C	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	36153953	rs12586757	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr14	36169237	rs200580583	TCACTTTCC	T	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr14	36207848	rs12587686	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,40:0.40:100
chr14	36218039	rs56861116	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-1.626;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	36219956	rs60253052	AC	A	368.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	36231816	rs11847872	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	36244319	.	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.635;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr14	36298932	rs10146494	G	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-1.053;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr14	36300895	rs34375843	T	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr14	36334905	.	C	CT	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-1.346;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr14	36768276	rs4900833	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr14	36781037	rs7154340	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr14	36784095	rs113771477	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:158,129:0.45:287
chr14	36788759	rs75031154	C	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr14	36789729	rs3168891	T	G	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	36789775	rs2899849	A	T	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:152,131:0.46:283
chr14	36789795	rs11558802	G	A	4298.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:143,121:0.46:264
chr14	36840650	rs3742592	A	T	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	36942909	rs7159699	A	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr14	36944188	rs1012914	G	A	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	36947081	rs12435251	C	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,70:0.55:128
chr14	36988928	rs372170273	AAG	A	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.996;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:163,23:0.12:186
chr14	37050739	rs10135894	G	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr14	37051427	rs11624339	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr14	37051526	rs35076464	T	C	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr14	37051634	rs35669843	G	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr14	37131993	rs12883298	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr14	37132048	rs12882923	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:108,99:0.48:207
chr14	37132061	rs12883049	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:126,108:0.46:234
chr14	37132769	rs2236007	G	A	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:176,277:0.61:453
chr14	37135752	rs12881240	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:102,106:0.51:208
chr14	37140504	rs8004187	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr14	37145374	rs147968235	A	AT	3484.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:222,178:0.45:400
chr14	37149943	rs146639486	G	GT	3323.73	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:249,192:0.44:441
chr14	37153163	rs1884217	A	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr14	37153185	rs10132292	T	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr14	37194681	rs58321507	AAAAT	A	1384.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	37203617	rs3061575	T	TTA	4389.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	37203642	rs5807904	TA	T	6018.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	37344229	rs5807914	A	AG	3051.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:103,92:0.47:195
chr14	37344275	rs712384	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr14	37344347	rs2021404	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr14	37421370	rs112939099	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.67;ReadPosRankSum=0.480;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	37421432	rs113334451	T	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.82;ReadPosRankSum=1.125;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	37421441	rs79168362	G	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.67;ReadPosRankSum=-0.164;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr14	37739846	rs66866056	C	CT	116.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.696;QD=8.30;ReadPosRankSum=0.156;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr14	37838604	rs35277854	C	CA	477.50	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr14	38152274	rs1547102	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	38205027	rs1570399	T	C	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	38206818	rs4901157	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr14	38207008	rs11439106	A	AT	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=0.567;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	38207018	rs17107021	A	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.739;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr14	38218343	rs12586727	A	G	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:164,167:0.50:331
chr14	38218872	rs17768594	T	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	38222291	rs4901176	G	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	38256944	rs12586423	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	38260089	rs7153624	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	38264358	rs969446	C	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	38265344	rs1951639	T	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	38266074	rs9805910	C	T	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:150,169:0.53:319
chr14	38277999	rs4901284	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,70:0.56:124
chr14	38295646	rs10483494	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	38310606	rs10151474	G	A	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	38678356	rs12437095	G	A	3561.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.173;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=1.128;SOR=0.206;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr14	39502539	rs11418467	G	GA	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	39502626	rs11283010	A	AAATAGAAC	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	39511952	rs3837584	CT	C	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr14	39512122	rs4902326	T	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.08;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	39514231	rs1884384	T	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	39516714	rs374970367	CA	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.629;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr14	39517691	rs4902344	T	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	39543508	rs12164875	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	39543814	rs147995893	T	TAAG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	39545199	rs17108797	A	G	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:296,271:0.48:567
chr14	39554893	rs8009506	T	C	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=2.265;QD=11.81;ReadPosRankSum=1.249;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr14	39554893	.	TA	CA	244	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000,0.4998;HP=2;HapScore=3;MGOF=39;MMLQ=0;MQ=59.88;NF=20,3;NR=1,2;PP=244,34;QD=13.2748196451;SC=TAATTATATATACACACACAC;SbPval=1.0;Source=Platypus;TC=70;TCF=45;TCR=25;TR=21,5;WE=39554902;WS=39554881;set=Platypus	GT:AD:AF:DP	0/1:49,21:0.30:70
chr14	39554893	.	TA	TACACACACA	244	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000,0.4998;HP=2;HapScore=3;MGOF=39;MMLQ=0;MQ=59.88;NF=20,3;NR=1,2;PP=244,34;QD=13.2748196451;SC=TAATTATATATACACACACAC;SbPval=1.0;Source=Platypus;TC=70;TCF=45;TCR=25;TR=21,5;WE=39554902;WS=39554881;set=Platypus	GT:AD:AF:DP	0/1:19,5:0.21:24
chr14	39554941	rs115098573	T	G	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.083;QD=8.54;ReadPosRankSum=-0.587;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:97,85:0.47:182
chr14	39556185	rs8018720	G	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	39562455	rs5808022	T	TA	788.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr14	39562520	rs2415530	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr14	39565403	rs3818163	T	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	39583481	rs2277458	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	39587348	rs10136536	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr14	39587538	rs140851890	A	T	69.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.64;ReadPosRankSum=1.383;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	39591082	rs10132073	A	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	39591083	.	A	AT	70	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=14;HapScore=4;MGOF=9;MMLQ=23;MQ=58.11;NF=3;NR=1;PP=70;QD=18.5;SC=CATCCGGCTAATTTTTTTTTT;SbPval=0.93;Source=Platypus;TC=10;TCF=5;TCR=5;TR=4;WE=39591091;WS=39591072;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	39591613	rs60205535	G	GT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.525;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr14	39602970	rs8006392	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr14	39605542	rs9322993	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr14	39605585	rs78082091	T	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr14	39620788	rs8003485	A	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	39620884	.	T	TA	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.205;QD=5.89;ReadPosRankSum=0.463;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr14	39620936	rs8003807	C	T	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	39623533	rs12147991	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr14	39627695	rs9322994	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr14	39627747	rs761804	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	39644498	rs1061583	G	A	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:99,125:0.56:224
chr14	39645863	rs2252040	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	39645921	rs3215670	G	GC	110.82	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	39650234	rs2180792	A	T	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	39651193	rs532	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	39684863	rs115537951	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:121,109:0.47:230
chr14	39685065	rs139899426	T	C	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:215,212:0.50:427
chr14	39703324	rs7141840	A	G	10177.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr14	39703498	rs7143646	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:91,108:0.54:199
chr14	39716201	rs11845046	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr14	39717002	rs17109049	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr14	39722023	rs10134365	G	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr14	39736680	rs7140561	T	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	39748480	rs7158558	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	39760393	rs2274399	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=2.218;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr14	39761731	rs114225395	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	39763111	rs956108	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr14	39773639	rs2274398	G	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	39777676	rs1950952	G	C	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	39784004	rs75318507	GTA	G	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr14	39784042	rs2415540	A	G	926.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.232;MLEAC=2;MLEAF=1.000;MQ=59.76;MQRankSum=0.000;QD=20.58;ReadPosRankSum=2.533;SOR=1.699;set=HC	GT:AD:AF:DP	1/1:5,40:0.89:45
chr14	39784042	.	ATA	GTA,GTG	417	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.56;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=45;MMLQ=27;MQ=59.03;NF=12,7;NR=32,11;PP=417,158;QD=10.2675275579;SC=GTGTGTGTGTATATATATATA;SbPval=0.81;Source=Platypus;TC=50;TCF=17;TCR=33;TR=44,18;WE=39784052;WS=39784032;set=Platypus	GT:AF:DP	0/1:0.88:50
chr14	39784044	rs112379214	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.862;QD=6.01;ReadPosRankSum=0.252;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr14	39784965	rs10150863	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	39796048	rs36031495	GT	G	2130.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	39818028	rs1140952	A	G	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:132,168:0.56:300
chr14	39818222	rs7156249	G	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	39856043	rs10146207	G	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	39868646	rs3814860	C	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr14	39871017	rs7156962	T	C	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:205,184:0.47:389
chr14	39871742	rs7158282	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.380;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr14	39900672	rs8006123	T	C	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr14	42355771	rs721222	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	42360633	rs6572117	T	C	9499.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr14	42997835	rs73326763	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr14	42997963	rs9323070	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr14	42998026	rs10148466	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	44973638	rs412408	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	44974189	rs11621923	C	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	44974922	rs3825632	A	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	44975147	rs11623175	A	G	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:127,127:0.50:254
chr14	44975510	rs3809430	C	T	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:96,117:0.55:213
chr14	44976241	rs11629125	T	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr14	45512771	rs72672914	C	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.145;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr14	45515964	rs75513672	A	C	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.406;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:65,61:0.48:126
chr14	45535985	rs12100842	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.803;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr14	45565498	.	AT	A	366.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.408;QD=5.10;ReadPosRankSum=1.328;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:28,44:0.61:72
chr14	45571012	rs34278709	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.466;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr14	45605818	rs2033385	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr14	45628241	rs11157433	T	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	45628549	rs114164551	T	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr14	45644589	rs1367580	G	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr14	45645820	rs116519044	A	G	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr14	45650813	rs8020533	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr14	45654410	rs34252356	TCTTA	T	1212.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr14	45658415	rs7142192	G	A	5970.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:231,283:0.55:514
chr14	45664721	rs58790242	C	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:149,124:0.45:273
chr14	45665690	rs79343837	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,101:0.49:205
chr14	45669205	rs8018014	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr14	45673579	rs17115898	A	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.355;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:35,37:0.51:72
chr14	45705009	rs1000048	T	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr14	45707041	rs1252966	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	45711594	rs1266209	T	C	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr14	47121018	rs139502430	G	GC	1219.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr14	47314938	rs1388568	C	T	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr14	47315127	rs1388567	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	47324127	rs3007133	G	A	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	47340993	.	GA	G	2863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=4.453;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.928;QD=16.75;ReadPosRankSum=0.504;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:78,93:0.54:171
chr14	47341131	rs2933208	C	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	47528470	rs8009302	T	C	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	47528551	rs10144183	T	A	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:141,128:0.48:269
chr14	47530841	rs7147260	A	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=1.698;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr14	47530845	rs7147741	G	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	47582348	rs8006750	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	47613364	rs72680210	G	T	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:227,141:0.38:368
chr14	47687187	rs8011854	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	47812071	rs2277472	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr14	47812311	rs7160311	C	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr14	48230293	.	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=-0.000;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr14	50033016	.	C	CA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.674;QD=6.21;ReadPosRankSum=2.579;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr14	50044392	rs2883438	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr14	50065359	rs2281837	C	G	9837.77	.	AC=1;AF=0.500;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	0/1:489,494:0.50:983
chr14	50065717	rs2281836	G	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr14	50068299	rs11625804	C	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:91,52:0.36:143
chr14	50069282	rs2354444	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	50070384	rs7146398	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=0.856;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr14	50074014	rs2354445	G	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	50094639	rs6572594	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	50094913	rs2985696	C	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	50100386	rs2985687	T	C	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:359,282:0.44:641
chr14	50100683	rs2985686	C	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr14	50101370	rs2985685	G	A	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.241;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:125,109:0.47:234
chr14	50101682	rs2985684	C	G	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:296,296:0.50:592
chr14	50110319	rs3218801	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.447;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr14	50113915	rs7155238	T	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr14	50114117	rs3218792	CT	C	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	50120858	rs3212323	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.791;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr14	50122280	rs10678863	C	CAG	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	50131728	rs35615446	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr14	50131846	rs3218791	G	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr14	50131932	rs3218795	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=0.267;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr14	50133033	rs3218797	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=1.497;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:54,40:0.43:94
chr14	50175792	rs11157703	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	50195679	rs4301946	A	G	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr14	50196373	rs34410594	T	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr14	50199337	rs60013005	A	AT	328.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.224;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr14	50199375	rs10146753	A	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	50206702	rs4898631	G	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	50241205	rs66520673	TAGA	T	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr14	50241258	rs4499141	A	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:109,92:0.46:201
chr14	50244835	rs4900949	C	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	50245161	rs35029396	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.503;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr14	50246918	rs115954811	C	G	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:144,134:0.48:278
chr14	50247290	rs4900952	G	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	50249500	rs140015577	C	CCAAA	1374.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr14	50251369	rs10143621	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.341;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:65,43:0.40:108
chr14	50251888	rs8009346	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr14	50272975	.	T	TA	85.84	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.46;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	50272976	.	T	TATATA	85.84	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.46;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	50272978	.	T	A	94.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.72;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	50280577	rs3126194	T	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	50280688	rs3126195	T	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr14	50298153	.	A	C	341.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr14	50298962	rs3100906	T	A	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.890;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:92,104:0.53:196
chr14	50299051	rs56170989	CT	C	266.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.159;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr14	50300310	rs3100904	A	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=1.937;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	50319327	rs3126160	T	C	14293.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr14	50319499	rs3100887	G	T	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:163,177:0.52:340
chr14	50459609	rs10134002	T	C	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	50459673	rs10134096	T	C	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	50477643	rs4900978	G	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	50551870	rs17122081	T	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:165,176:0.52:341
chr14	50555664	rs2883738	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr14	50641347	rs10782418	T	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:108,130:0.55:238
chr14	50649088	rs2024811	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr14	50807624	rs11570840	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	50808802	rs7142237	G	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr14	50808965	rs11570836	A	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr14	50809873	.	C	CTTTTTT	183.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.22;ReadPosRankSum=0.091;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	50809895	rs2226054	G	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	50824839	rs11157737	G	A	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr14	50824954	rs11157738	T	C	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:94,103:0.52:197
chr14	50825033	rs11570816	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	50828838	rs10137638	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-1.081;QD=6.85;ReadPosRankSum=0.350;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	50844367	rs59930863	G	GA	2333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.993;QD=15.66;ReadPosRankSum=0.606;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,76:0.51:149
chr14	50844856	rs1890978	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr14	50845231	rs7151046	C	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr14	50857189	.	C	A	681	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=15;MMLQ=27;MQ=59.51;NF=16;NR=29;PP=681;QD=15.9060269455;SC=TACAATTATTCTATTGTATTA;SbPval=0.65;Source=Platypus;TC=71;TCF=27;TCR=44;TR=45;WE=50857197;WS=50857179;set=Platypus	GT:AD:AF:DP	1/0:26,45:0.63:71
chr14	50863716	rs10136595	C	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr14	50877491	rs1265878	C	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	50929508	rs11624731	C	A	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	50942047	rs12717408	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50943034	rs76595851	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.409;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr14	50949196	rs11364906	TA	T	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50971446	rs7146431	C	T	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	51054598	rs35014209	A	G	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.071;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:108,97:0.47:205
chr14	51057727	rs1060197	G	A	2907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.935;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:155,153:0.50:308
chr14	51058234	rs2934684	G	T	2115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.487;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:128,108:0.46:236
chr14	51062236	rs3834518	TTC	T	1379.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr14	51062357	rs3759588	G	A	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:192,162:0.46:354
chr14	51096610	rs3080579	G	GTTCTT	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.86;ReadPosRankSum=1.225;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr14	51096644	rs138369461	G	GAAT	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=1.929;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr14	51097536	rs2934692	G	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	51098870	rs75154648	C	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	51107452	rs871643	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr14	51134038	rs45479904	C	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr14	51196142	rs2984274	T	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr14	51206021	rs3015485	A	G	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	51208236	rs76858548	T	TGTA	2097.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr14	51223106	rs2295846	G	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=1.162;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr14	51223789	rs2073347	C	T	11084.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr14	51224374	rs12882191	T	G	10734.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr14	51224417	rs2236316	G	C	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:242,199:0.45:441
chr14	51224658	rs2073348	T	A	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:156,150:0.49:306
chr14	51227000	rs4901055	A	G	4287.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:267,230:0.46:497
chr14	51228655	rs12883882	C	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr14	51228682	rs6572694	G	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	51230431	rs150650334	CTT	C	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:4,47:0.92:51
chr14	51237701	rs17793018	A	G	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:155,150:0.49:305
chr14	51239067	rs8020503	C	G	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	51245666	rs7143959	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr14	51289874	rs1547077	G	T	2818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.196;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=-1.116;QD=18.07;ReadPosRankSum=-0.211;SOR=0.285;set=HC	GT:AD:AF:DP	1/1:19,137:0.88:156
chr14	51290141	rs9672090	A	G	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	51297448	rs201889202	G	GC	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=30.23;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	51324884	rs2027343	A	G	7778.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr14	51324894	rs72242050	AAG	A	5301.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:4,209:0.98:213
chr14	51338875	rs11850408	A	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	51344584	rs10672040	C	CAA,CAAA	1887.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.74;QD=32.55;SOR=0.963;set=HC	GT:AD:AF:DP	1/2:0,23,35:0.40,0.60:58
chr14	51347023	rs12889998	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	51347107	rs2185300	G	A	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	51352608	rs2297893	T	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr14	51353493	rs7158183	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	51372098	rs3216001	CA	C	856.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr14	51372333	rs1959527	A	G	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:141,94:0.40:235
chr14	51375699	rs11414268	T	TA	941.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:112,61:0.35:173
chr14	51375797	rs8004768	T	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr14	51378590	rs11356035	CT	C	5488.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:255,200:0.44:455
chr14	51381286	rs4901066	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr14	51382358	rs1890701	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	51446216	rs2275462	T	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:86,115:0.57:201
chr14	51446290	rs11844823	G	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr14	51446357	rs11844781	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr14	51446387	rs11844864	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-2.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	51448413	rs10150121	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr14	51449518	.	C	T	4119.77	.	AC=1;AF=0.500;AN=2;DP=417;set=Intersection	GT:AD:AF:DP	0/1:204,209:0.51:413
chr14	51475794	rs2297889	A	T	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	51491956	rs11848681	T	C	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:154,180:0.54:334
chr14	51492135	rs11268748	C	CCACACAGGTGTTTT	5513.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	51710508	rs35110538	T	TA	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	51710543	rs143191476	C	CT	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr14	51710732	rs45564035	G	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:67,80:0.54:147
chr14	51716161	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,14:0.23:61
chr14	52165083	rs6572784	T	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	52179438	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	52182081	rs731715	T	A	20070.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr14	52186966	rs2277495	G	A	30248.77	.	AC=2;AF=1.00;AN=2;DB;DP=1172;set=Intersection	GT:AD:AF:DP	1/1:6,1152:0.99:1158
chr14	52294397	rs6572795	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	52308314	rs10498437	G	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:152,138:0.48:290
chr14	52383228	rs11322270	GA	G	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.208;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:77,52:0.40:129
chr14	52384078	rs138171181	A	AATCG	5778.73	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:204,153:0.43:357
chr14	52384159	rs111422009	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:149,87:0.37:236
chr14	52417345	rs45501792	C	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr14	52418759	rs11847688	T	A	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr14	52446002	rs113328422	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:152,106:0.41:258
chr14	52465460	rs1151570	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	52471017	rs34688526	G	GAAAT	1509.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr14	52474721	rs1476284	C	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	52478315	rs1051069	A	G	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	52481917	rs946615	C	T	14444.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,550:1.00:550
chr14	52486961	rs77091361	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr14	52494072	rs2273429	G	A	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:147,117:0.44:264
chr14	52495354	rs74049344	T	G	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.519;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:61,66:0.52:127
chr14	52495375	rs7144352	C	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.37;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	52496387	rs2273430	C	A	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	52496407	rs2273431	C	T	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	52505360	rs753051	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr14	52505375	rs753050	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr14	52505771	rs2029978	TT	AG	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	52505811	rs2029976	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr14	52507429	rs3742536	A	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr14	52509101	rs1982963	G	A	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:203,163:0.45:366
chr14	52509483	rs56834750	TG	CA	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,90:0.45:200
chr14	52509788	rs3818187	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	52520368	rs2101919	C	T	9441.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr14	52520853	rs904059	A	G	8243.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr14	52534810	rs7146229	G	A	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:228,196:0.46:424
chr14	52534997	rs7151874	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	52535387	rs984051	A	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	52535415	rs984050	G	A	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:179,156:0.47:335
chr14	52535648	rs3920038	G	T	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:186,153:0.45:339
chr14	52536512	rs1497082	T	C	11463.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr14	52735063	rs41407349	C	G	7348.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:352,363:0.51:715
chr14	52781195	rs1254598	G	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	52794234	rs708502	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	52906081	rs2249922	T	G	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:170,197:0.54:367
chr14	52906179	rs2249925	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr14	52907353	rs1952254	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=1.118;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr14	52957750	.	G	T	1014.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr14	53004157	rs10150229	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	53019944	rs147785041	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr14	53098902	rs762063	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:71,131:0.65:202
chr14	53100599	rs61747576	C	T	2833.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:158,148:0.48:306
chr14	53100760	rs11157925	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	53110384	rs4898762	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr14	53130507	rs17125636	T	C	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:113,118:0.51:231
chr14	53133036	rs12885338	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr14	53138259	.	C	T	433.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr14	53150695	rs11621485	G	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr14	53178303	rs10483616	C	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.114;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr14	53194006	rs12435008	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr14	53197042	rs2277493	G	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr14	53235545	rs2274274	A	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.873;QD=1.67;ReadPosRankSum=0.319;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr14	53250293	rs2296494	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr14	53325090	rs6572868	C	T	6653.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	53326454	rs3818453	C	A	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	53327919	rs72686364	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-1.174;QD=12.19;ReadPosRankSum=0.239;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr14	53345266	rs2357946	G	C	9596.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr14	53345378	rs2357947	G	A	9449.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	53386172	rs5808695	A	ATAAT	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	53415359	rs17125973	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr14	53513478	rs10599915	AAG	A	6592.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	53522324	rs5808701	T	TA	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	53525392	rs915436	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	53529669	rs4898778	A	T	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	53539471	rs875663	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	53619463	rs2358188	G	A	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr14	53619480	rs140904345	T	TGCCGCC	5515.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	53619544	rs2358189	G	A	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	54417522	rs17563	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,74:0.44:168
chr14	54418986	rs2761880	T	C	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	54863577	rs2235961	G	A	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.989;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:49,45:0.48:94
chr14	54868922	rs202192816	CA	C	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.896;QD=1.30;ReadPosRankSum=-0.038;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:107,41:0.28:148
chr14	54869027	.	CGT	C	197	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=34;MMLQ=24;MQ=59.93;NF=0;NR=11;PP=197;QD=18.2727272727;SC=CATGTGTGTGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=41;TCF=0;TCR=41;TR=11;WE=54869036;WS=54869017;set=Platypus	GT:AD:AF:DP	1/0:30,11:0.27:41
chr14	54875514	rs2179896	A	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.065;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr14	54877819	rs2143958	C	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	54879473	rs2268332	G	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,85:0.51:167
chr14	55154053	rs11626473	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr14	55168673	rs1022754	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	55203703	rs10133272	G	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr14	55218161	rs2295820	A	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.465;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr14	55218435	rs2295822	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	55221345	.	G	A	21	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=2;MGOF=9;MMLQ=23;MQ=60.0;NF=2;NR=0;PP=21;QD=27.8856062736;SC=TGACGGCACCGGTGGCAGACT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=55221353;WS=55221342;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	55241531	rs35827295	CA	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.550;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr14	55255465	rs182313122	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr14	55255673	rs11431	C	T	6081.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:474,333:0.41:807
chr14	55309552	rs76009965	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr14	55309840	rs145762799	AAAG	A	370.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	55332247	rs144909725	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr14	55454155	rs139807986	C	CATAT,CAT	279.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	0/1:0.43:21
chr14	55473900	rs9323275	T	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	55473950	rs9806068	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.183;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr14	55475515	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=5.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=1.98;ReadPosRankSum=0.754;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr14	55493350	rs1187878	T	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:58,63:0.52:121
chr14	55493408	rs1201378	T	C	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:233,228:0.49:461
chr14	55510110	rs17128136	G	A	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:216,195:0.47:411
chr14	55530120	rs3742564	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr14	55604935	rs4644	C	A	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:253,237:0.48:490
chr14	55605036	rs4652	A	C	5849.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:257,295:0.53:552
chr14	55609234	rs2075601	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr14	55612006	rs71659941	TA	T	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.018;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:86,37:0.30:123
chr14	55617578	rs35448900	CA	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-0.643;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr14	55619311	rs15870	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr14	55621455	.	G	C	3013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=2.618;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:187,164:0.47:351
chr14	55643752	rs8009244	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr14	55643908	rs10144326	A	G	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:90,90:0.50:180
chr14	55647575	rs11351178	CA	C	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr14	55647798	rs8012105	A	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.024;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr14	55648115	rs58737648	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.022;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr14	55655692	rs2274271	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr14	55819318	rs114576128	G	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	55847466	rs946059	A	G	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:116,112:0.49:228
chr14	55848972	rs3783650	A	C	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr14	55902542	rs7149317	G	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	55907025	rs8020152	T	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	55907172	rs8019270	C	G	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	56044061	rs10142739	C	T	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:178,136:0.43:314
chr14	56100160	rs10135907	G	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	56103882	rs10483647	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr14	56104095	rs200929648	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.074;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr14	56106080	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.741;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr14	56108033	rs2341890	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	56119684	rs376416311	T	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr14	56125337	.	GTAT	G	1992.73	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr14	56125366	rs74053651	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr14	56126456	rs7160678	C	A	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	56133942	rs7150285	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr14	56139313	rs3215766	GT	G	1719.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:68,76:0.53:144
chr14	56146228	rs12587735	T	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	56146357	rs11546	G	A	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:189,181:0.49:370
chr14	56167983	rs11450830	A	AT	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=1.188;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:45,43:0.49:88
chr14	56755425	rs34574403	C	CA	122.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr14	56763458	rs148290454	C	T	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:202,170:0.46:372
chr14	56763886	rs1152466	G	A	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:204,158:0.44:362
chr14	56958173	rs1889382	C	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	56958328	rs12894026	G	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr14	57046829	rs2275025	C	A	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=2.679;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:76,107:0.58:183
chr14	57051892	rs150811881	ATTTAC	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	57052511	rs3737171	G	T	4923.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:152,238:0.61:390
chr14	57070501	rs10782433	A	G	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	57072338	rs3737170	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr14	57082648	rs2275024	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.142;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr14	57083897	rs2275023	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.83;ReadPosRankSum=-0.026;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr14	57088433	rs12589087	A	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr14	57088506	rs12589117	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr14	57092038	rs2274706	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr14	57099859	rs1041316	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	57101560	rs112611071	C	CA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=13.069;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.709;QD=1.62;ReadPosRankSum=0.652;SOR=2.140;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr14	57101682	rs913742	A	G	4540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.799;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:275,234:0.46:509
chr14	57116759	rs7156095	T	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,40:0.45:88
chr14	57116979	rs1958530	A	G	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	57196766	rs10151357	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-0.503;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr14	57672540	rs3742577	T	C	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.004;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:44,53:0.55:97
chr14	57672715	rs3742578	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,80:0.52:155
chr14	57676330	rs1804820	G	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:108,122:0.53:230
chr14	57676511	rs10143527	T	A	3908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.995;QD=18.52;ReadPosRankSum=-0.115;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:106,105:0.50:211
chr14	57676515	rs10131287	C	T	3838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.000;QD=19.59;ReadPosRankSum=-0.010;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:99,97:0.49:196
chr14	57702687	rs3736904	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr14	57704232	rs1980783	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr14	57711181	rs9323303	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr14	57735954	rs7152744	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr14	57740964	rs114072619	G	A	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:167,141:0.46:308
chr14	57741550	rs1189899	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr14	57863385	rs12894584	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr14	57866623	rs2152360	A	G	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-1.454;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:28,42:0.60:70
chr14	57876265	rs11620639	G	A	10152.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr14	57938124	rs1152531	C	T	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:147,98:0.40:245
chr14	57938260	rs1152530	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	57945689	rs1152525	G	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	57948380	rs1152522	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr14	57957654	rs1203339	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.439;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	57957664	rs1203338	T	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.57;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	57960474	rs10139566	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr14	58031127	rs113050860	A	G	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:109,88:0.45:197
chr14	58047889	rs17093366	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr14	58056257	rs1190313	G	T	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr14	58060862	rs17724076	G	A	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	58063389	rs112312113	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr14	58332306	rs58495290	A	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr14	58471355	rs2295139	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	58471378	.	C	CT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.179;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr14	58478873	rs3837616	GA	G	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.278;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr14	58605426	rs114888842	G	A	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:177,140:0.44:317
chr14	58666812	rs112877891	C	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.588;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	58690427	rs111531986	T	TA	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.216;QD=5.00;ReadPosRankSum=1.367;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:81,48:0.37:129
chr14	58697795	rs111932447	C	CAG	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr14	58724817	rs35486640	C	CTT	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	58724849	rs140273752	AAC	A	519.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr14	58730626	rs2348071	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	58737766	rs8005100	A	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.09;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	58758279	rs149972156	TAC	T	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.779;QD=0.57;ReadPosRankSum=-1.593;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:554,73:0.12:627
chr14	58758331	rs11461912	G	GT	18690.73	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr14	58766617	rs1957038	A	G	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	58768333	rs45562837	C	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:159,104:0.40:263
chr14	58770389	rs10145481	C	G	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	58771632	rs7155580	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	58830906	.	G	A	198.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr14	58831142	rs1051858	A	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr14	58838668	rs1051860	A	G	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:308,241:0.44:549
chr14	58838701	rs1051861	C	T	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:239,217:0.48:456
chr14	58869510	rs7153357	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	58875135	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.604;QD=1.16;ReadPosRankSum=-0.598;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr14	58907006	rs138818880	TTC	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.828;QD=1.28;ReadPosRankSum=-1.528;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:110,19:0.15:129
chr14	58907825	rs71107948	AT	A	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	58907908	rs71107949	CTT	C	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.726;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr14	58917225	rs1748970	C	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	58917454	rs1748971	G	A	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	58920240	rs1748975	A	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	58923395	rs1743721	G	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	58926527	rs1748980	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	58932772	rs1743716	A	G	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	58934371	rs1632390	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	58937416	rs1748986	T	C	10831.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr14	58953617	rs1743702	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	58953746	rs1617510	C	G	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr14	58954588	rs5808973	T	TA	1903.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:5,89:0.95:94
chr14	59003623	rs61974556	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	59010649	rs28535751	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	59105188	rs2003021	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	59112732	rs17832998	C	T	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:249,249:0.50:498
chr14	59113112	rs369268433	C	T	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:212,201:0.49:413
chr14	59730422	rs67718668	AAGG	A	2444.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr14	59781871	rs3818289	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr14	59787480	rs12147707	T	C	42.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	59789586	rs8021976	A	G	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:136,149:0.52:285
chr14	59790813	rs6573250	C	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=2.405;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr14	59798473	rs2146012	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr14	59805217	rs3830986	GT	G	750.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr14	59814502	rs941886	C	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr14	59820780	rs10713024	AT	A	215.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.254;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr14	59834048	rs10130669	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	59930503	rs1752427	A	G	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:263,241:0.48:504
chr14	59931931	rs1752428	T	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.369;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	59931997	rs1752429	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.68;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	59939727	rs8660	T	C	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:188,218:0.54:406
chr14	59942953	rs10634233	T	TCAAC	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	59946094	rs1752435	G	C	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.415;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:126,148:0.54:274
chr14	59946099	rs1752436	T	C	5139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=1.158;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:104,127:0.55:231
chr14	59950417	rs1268584	T	G	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:179,182:0.50:361
chr14	59951446	rs80087397	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.884;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr14	59953355	rs1253108	A	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-1.248;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr14	59953379	rs1253109	A	T	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.417;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:33,29:0.47:62
chr14	59961640	rs112846969	AT	A	753.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr14	59961971	rs35919683	TG	T	340.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr14	59965429	rs1271507	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr14	59965705	rs1271508	A	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr14	59978266	.	TAA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=0.553;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr14	59978366	rs10635523	A	ATG	4016.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:171,109:0.39:280
chr14	60004844	rs4261431	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:109,87:0.44:196
chr14	60031996	rs1980580	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:124,86:0.41:210
chr14	60032046	rs1980579	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr14	60034840	rs982862	G	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr14	60043422	rs4898996	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr14	60063472	rs6573275	A	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:133,121:0.48:254
chr14	60071972	rs1950787	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr14	60072023	rs1950786	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:75,64:0.46:139
chr14	60096965	.	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.642;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr14	60394828	rs9323357	G	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	60397886	rs116980411	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	60405003	rs28731367	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr14	60405278	rs117109392	G	A	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr14	60405385	rs34650525	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr14	60411584	rs5809056	TCA	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.815;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	60426771	rs150683	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	60444652	rs219328	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr14	60451770	rs219341	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	60451816	rs219342	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr14	60468661	rs219369	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr14	60470572	rs201379118	C	CA	254.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr14	60484931	rs219391	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	60485240	rs219392	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr14	60498876	rs219409	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	60519920	rs95425	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:103,90:0.47:193
chr14	60520800	rs116863944	T	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=0.079;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr14	60529949	rs117610982	G	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	60530160	rs201841893	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.432;QD=2.83;ReadPosRankSum=-0.994;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr14	60574448	rs2296700	A	G	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:300,291:0.49:591
chr14	60574539	rs12465	A	G	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr14	60581673	rs35459418	CT	C	2597.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=0.296;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr14	60581863	rs219314	G	A	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr14	60581935	rs150687	C	T	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr14	60582053	rs150688	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr14	60585131	rs308998	A	G	2825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=7.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.230;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:138,135:0.49:273
chr14	60587879	rs11408436	C	CT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.347;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr14	60591829	rs308990	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr14	60591887	rs167437	G	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:92,91:0.50:183
chr14	60592030	rs308989	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr14	60600477	rs1623792	T	A	2845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.840;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:124,142:0.53:266
chr14	60611528	rs409866	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	60611585	rs439332	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=2.000;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr14	60611648	rs399535	C	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.407;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:54,46:0.46:100
chr14	60611675	rs381839	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-0.032;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:62,44:0.42:106
chr14	60615914	rs412157	C	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr14	60616042	rs411880	C	T	2358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.153;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:107,117:0.52:224
chr14	60616912	rs376945245	G	GGCA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=2.087;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:88,31:0.26:119
chr14	60616914	rs201920626	C	A	1641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.921;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.384;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:73,57:0.44:130
chr14	60622944	rs3835287	A	AAAAG	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr14	60712515	rs8018093	G	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr14	60750349	rs4899009	C	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr14	60750365	rs8012816	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	60921673	rs1262175	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	60923783	rs11625921	C	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	60928201	rs1956549	G	A	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	60932569	rs10529202	AACACACACACACACACACACAC	A	2579.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	60935281	rs12878738	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	60944959	rs11845369	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	60945203	rs11158285	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	60975956	rs1956558	T	C	7521.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	60976537	rs33912345	C	A	10285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=1007;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.105;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:487,506:0.51:993
chr14	60978071	rs1061108	C	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	61118783	rs4899014	C	T	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	61124940	rs10143202	A	G	10837.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:4,428:0.99:432
chr14	61180657	rs3742636	T	G	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:99,101:0.51:200
chr14	61184731	rs370845559	AAAT	A	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,6:0.17:36
chr14	61247164	rs180686686	A	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr14	61285352	rs973063	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr14	61285417	rs2020890	T	C	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr14	61445967	rs7142228	A	G	6606.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	61448510	rs2296924	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	61449167	rs2296923	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	61449328	rs976272	T	A	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr14	61451329	rs2182985	G	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	61451589	rs2149303	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	61453739	rs33922839	C	CT	5519.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	61497147	rs1465146	A	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	61497285	rs1465145	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	61509924	rs2296921	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	61747119	rs28731324	G	C	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:242,209:0.46:451
chr14	61747644	rs3196765	A	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:141,162:0.53:303
chr14	61789192	rs79204130	G	A	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr14	61789318	rs1886466	C	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	61915751	rs2296273	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr14	61920197	rs10569436	CCTTT	C	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr14	61924092	rs2296276	G	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-1.418;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr14	61924140	rs10134348	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	61952276	rs2230502	T	A	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:156,145:0.48:301
chr14	61952429	rs1536016	T	C	11728.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr14	61995673	rs2463117	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.610;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	61995691	.	CGT	C,CGTGTGTGTGTGT	634.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=36;set=Intersection	GT:AF:DP	0/1:0.82:22
chr14	61997226	rs1088680	C	T	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	61997393	rs1088679	T	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	62037297	rs798792	C	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	62117798	rs10149485	C	T	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:274,133:0.33:407
chr14	62204748	.	TAA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.203;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr14	62205175	rs10138153	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	62208005	rs4902080	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	62211578	rs60361955	CGTGTGTGT	CGTGT,C	586.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/1:1.00:13
chr14	62212359	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.124;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr14	62212675	rs4902082	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr14	62213848	rs2057482	T	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	62213929	rs5809121	A	AT	359.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	62233806	rs1254677	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.77;ReadPosRankSum=0.152;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr14	62249191	rs35450258	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr14	62462766	rs8019076	T	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	62463214	rs1889806	C	T	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:114,153:0.57:267
chr14	62536304	rs73264209	C	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr14	62546001	rs1892051	C	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr14	62546256	rs2353777	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr14	62547469	rs7148330	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr14	63174616	rs7161127	T	C	12314.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr14	63174960	rs4902176	C	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:114,130:0.53:244
chr14	63316274	rs57793448	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr14	63453773	rs1950975	A	G	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:201,226:0.53:427
chr14	63735862	rs10133216	C	T	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:80,115:0.59:195
chr14	63735954	rs10145453	T	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:94,117:0.55:211
chr14	63747634	rs7146249	T	C	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	63750015	rs2179967	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr14	63784407	rs11382440	A	AG	20456.73	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr14	63848647	rs10146129	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	63848978	rs61427538	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr14	63860788	.	CTTTTTTTTT	C,CTTTTTTTT	167.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=10;set=Intersection	GT:AF:DP	0/1:0.71:7
chr14	64009436	rs10142811	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.097;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr14	64009489	rs1271563	T	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	64009521	rs1255720	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	64194459	rs8006901	A	C	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=1.886;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:47,63:0.57:110
chr14	64408748	rs78235927	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr14	64408852	rs33976862	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr14	64421392	rs1255874	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	64423187	rs2792201	C	A	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	64423316	rs34939365	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr14	64428154	rs1255884	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr14	64443258	rs34440267	CT	C,CTT	894.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.994;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.606;QD=8.77;ReadPosRankSum=0.099;SOR=0.330;set=HC	GT:AD:AF:DP	1/2:11,53,38:0.52,0.37:102
chr14	64449237	rs368442429	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.185;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr14	64457079	rs1255907	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	64457109	rs17101523	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	64457224	rs17101525	C	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr14	64462007	rs1255912	A	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr14	64462066	rs8017849	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.393;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr14	64462071	rs1255913	G	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.92;ReadPosRankSum=0.758;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	64467358	rs57259697	A	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	64468499	rs8012830	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr14	64473899	rs11158524	A	G	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.560;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:114,101:0.47:215
chr14	64476680	rs7146588	T	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	64488333	rs79555365	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	64489291	rs79429423	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	64491207	rs7141086	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr14	64494278	rs10151127	C	T	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.227;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr14	64496763	rs11850509	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:84,86:0.51:170
chr14	64496872	rs3866737	G	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	64497894	rs34625768	C	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr14	64497929	rs7157465	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr14	64498037	rs4027405	G	A	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	64518321	rs11628107	A	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.244;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:52,44:0.46:96
chr14	64519035	rs1890908	A	G	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr14	64519709	rs34843668	A	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.963;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:63,61:0.49:124
chr14	64522550	rs10676670	T	TAATAA	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=44.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	64523094	rs7153376	G	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	64537295	rs1255965	T	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	64537325	rs79574442	A	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	64537657	rs1255964	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	64540956	rs113820617	C	T	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr14	64542872	rs1255960	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	64548024	rs76804071	G	GT	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr14	64548060	rs77543507	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr14	64551573	rs113851861	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	64554088	rs77860632	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.097;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr14	64554266	rs72720309	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr14	64554517	rs17101637	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr14	64564527	rs8007972	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	64564565	rs79836542	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	64565582	rs9323444	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr14	64568496	rs80342286	T	A	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,6:0.17:36
chr14	64574140	rs10135310	C	A	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:160,148:0.48:308
chr14	64580297	rs145218296	T	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=0.469;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:77,54:0.41:131
chr14	64580368	rs17101673	A	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr14	64586367	rs80030705	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.520;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr14	64589225	rs8022302	T	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	64604634	rs8007874	T	C	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr14	64606654	rs17825431	G	C	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:161,146:0.48:307
chr14	64606869	rs77408788	A	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	64612845	rs11629287	C	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	64612858	rs10151658	C	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	64625859	rs74408027	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr14	64632215	rs7152337	C	T	108.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.180;QD=15.57;ReadPosRankSum=-0.792;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr14	64637147	rs7161192	C	A	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:165,185:0.53:350
chr14	64655161	rs1255986	C	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	64656682	rs11423254	A	AT	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=1.479;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr14	64656855	rs2256191	T	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:139,132:0.49:271
chr14	64657684	rs1255988	C	A	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	64674981	rs1152595	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	64676098	rs1152592	A	G	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	64680848	rs1152591	A	G	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	64681193	rs1152590	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	64686207	rs915057	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64688175	rs1152588	G	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	64691099	rs1152585	G	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr14	64691320	rs8020646	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr14	64691643	rs2297621	G	C	293.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=9.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.723;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr14	64691644	rs35455974	AT	A	1118.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.067;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=0.247;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:5,49:0.91:54
chr14	64694082	rs8018687	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	64694195	rs928554	C	T	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	64700045	rs944050	T	C	4352.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:266,229:0.46:495
chr14	64724051	rs1256049	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr14	64746933	rs34967796	G	GA,GAA	650.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.58;QD=24.10;SOR=2.387;set=HC	GT:AD:AF:DP	1/2:0,11,16:0.41,0.59:27
chr14	64805001	rs1256120	A	G	5713.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:318,295:0.48:613
chr14	64805291	.	T	C	2581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.675;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:107,133:0.55:240
chr14	64805381	.	C	CCCGTCCCCGCAGACCGCCCCCCCTCCCCGCAGACCGCCCG	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=2.485;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr14	64805384	.	C	G	132	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=6;HapScore=2;MGOF=62;MMLQ=24;MQ=58.89;NF=0;NR=10;PP=132;QD=16.6771212547;SC=ACCGCCCCCCCTCCCCGCAGA;SbPval=1.0;Source=Platypus;TC=21;TCF=2;TCR=19;TR=10;WE=64805392;WS=64805374;set=Platypus	GT:AD:AF:DP	0/1:11,10:0.48:21
chr14	64814311	rs1256112	C	T	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	64855041	rs1076991	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:194,149:0.43:343
chr14	64879352	rs10678665	A	AT	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.801;QD=4.61;ReadPosRankSum=-0.317;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr14	64894359	rs28449701	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr14	64894362	rs11627525	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr14	64907994	rs11629354	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr14	64908651	rs8003567	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr14	64911562	rs8012229	T	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr14	64911627	rs1256143	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	64915182	rs2236222	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr14	64916165	rs10813	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr14	64926433	rs75480958	GTGCT	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	64935720	rs1256149	C	T	11663.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr14	64947181	rs8003790	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	64953580	rs10132969	T	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr14	64953591	rs10143839	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr14	64988114	rs10624421	C	CAA	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	65016572	rs12323549	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr14	65016702	rs7156953	T	G	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr14	65017760	rs76585972	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-1.025;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	65031534	rs6573560	C	T	3978.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:220,207:0.48:427
chr14	65032226	rs8007313	C	T	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	65032278	rs17824827	G	A	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:136,141:0.51:277
chr14	65054166	.	CTTTTTTTTTTT	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.05;ReadPosRankSum=1.902;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr14	65054816	rs55791907	C	T	3323.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:231,174:0.43:405
chr14	65054858	rs723594	T	C	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:241,202:0.46:443
chr14	65068221	rs11158545	C	A	7736.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr14	65182726	rs17102000	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr14	65182831	rs112524370	A	C	2817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.127;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:122,145:0.54:267
chr14	65195794	rs229644	T	C	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr14	65197126	rs229626	T	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	65197143	rs229625	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	65197304	rs17102018	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr14	65197442	rs57913362	T	C	7531.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:412,379:0.48:791
chr14	65197767	rs229624	G	A	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:274,239:0.47:513
chr14	65199448	rs17102019	T	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,66:0.49:136
chr14	65199688	rs17102020	G	A	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr14	65199701	rs149514773	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr14	65203499	rs229653	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr14	65204506	rs185527981	C	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,75:0.48:155
chr14	65208026	rs229650	T	C	12111.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr14	65209680	rs41301473	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:69,96:0.58:165
chr14	65209867	rs229649	C	T	8537.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:472,436:0.48:908
chr14	65216442	rs144652241	G	A	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:230,221:0.49:451
chr14	65219095	rs71444676	CAGAG	C	1159.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr14	65245863	rs1741489	C	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	65245956	rs1741488	C	T	14701.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr14	65245962	rs1741487	A	G	14549.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr14	65246006	rs1741486	G	A	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.38;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	65246006	.	GGCCAA	AGCCAA,AGCCAG	1142	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=46;MMLQ=27;MQ=60.0;NF=55,17;NR=81,27;PP=1142,518;QD=8.65272950402;SC=TGACAATCACGGCCAACCTTT;SbPval=0.53;Source=Platypus;TC=136;TCF=55;TCR=81;TR=136,44;WE=65246019;WS=65245996;set=Platypus	GT:AF:DP	0/1:1.00:136
chr14	65246011	rs1107633	A	G	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-1.179;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:155,76:0.33:231
chr14	65246040	rs2357726	G	A	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	65246350	rs1741485	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	65246623	rs1626923	T	C	20186.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr14	65249052	rs17245552	C	G	6458.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:407,340:0.46:747
chr14	65250939	rs229634	A	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	65253232	rs77806	T	C	8627.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	65260227	rs229591	T	G	18829.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr14	65261403	rs80024584	C	A	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr14	65263300	rs229587	C	T	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:171,162:0.49:333
chr14	65263347	rs229586	C	T	5025.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:246,250:0.50:496
chr14	65267469	rs230703	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr14	65267901	rs170736	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	65268167	rs230704	C	T	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:190,161:0.46:351
chr14	65269174	rs45607231	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr14	65270272	rs17767579	C	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr14	65271634	rs1353857	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr14	65271650	rs229581	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	65289966	rs1695751	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr14	65289978	rs179338	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	65407000	rs2071566	C	T	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr14	65410200	rs3831077	CT	C	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr14	65417070	rs35179634	C	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:148,137:0.48:285
chr14	65419293	rs45454295	A	G	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:155,173:0.53:328
chr14	65419473	rs59000318	C	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr14	65482570	.	C	T	285.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr14	65733759	.	C	CTT	3460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=63.48;MQRankSum=12.844;QD=13.16;ReadPosRankSum=0.848;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:139,124:0.47:263
chr14	65734491	rs1256511	T	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr14	65801811	rs12881755	A	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr14	65878807	rs1953416	C	T	5129.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:225,252:0.53:477
chr14	65878909	rs1953417	C	T	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:190,155:0.45:345
chr14	66028446	rs2229677	A	G	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	66028505	rs3825639	T	C	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	66082573	rs8012278	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.28;ReadPosRankSum=-0.589;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	66200177	rs3742597	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr14	66209190	rs1054218	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr14	66424605	rs7141711	C	A	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:186,195:0.51:381
chr14	66455502	rs17827111	A	G	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	66479652	rs10130914	G	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,61:0.45:137
chr14	66480286	rs111585949	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:149,142:0.49:291
chr14	66480528	rs111483872	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr14	66972164	rs10220636	A	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	66974474	rs928553	T	C	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:138,133:0.49:271
chr14	67147816	rs3759753	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr14	67291154	rs3784074	A	G	2799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=4.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.016;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:141,143:0.50:284
chr14	67291186	rs3784075	T	C	2983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.357;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:166,154:0.48:320
chr14	67389720	rs3215581	G	GT	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	67463012	rs7142068	C	T	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.921;QD=8.88;ReadPosRankSum=1.463;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:172,144:0.46:316
chr14	67555842	.	CTTTTTTTCTTTTTTT	C	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=46.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=6.148;SOR=4.107;set=HC	GT:AD:AF:DP	0/1:60,35:0.37:95
chr14	67555878	rs12323748	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	67671701	rs11158655	C	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:157,134:0.46:291
chr14	67675224	rs10150082	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr14	67688610	rs17248456	A	G	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:132,129:0.49:261
chr14	67691449	rs12590956	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.32;ReadPosRankSum=1.769;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	67691785	rs45612334	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr14	67767967	rs7144928	A	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr14	67769045	rs10146722	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	67769177	rs10146663	A	C	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:172,166:0.49:338
chr14	67770416	rs146237583	A	AATAGAG	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr14	67779506	rs12588292	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr14	67779580	rs12588355	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr14	67783484	rs5809338	T	TA	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	67784005	rs1475129	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	67784071	rs1475128	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr14	67786924	rs3809387	A	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-0.366;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr14	67790331	rs8016312	T	A	294.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.597;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr14	67790332	rs8015015	A	T	543.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.731;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr14	67805253	rs1045060	A	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr14	67807242	rs33973037	TA	T	2271.73	.	AC=1;AF=0.500;AN=2;DB;DP=316;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:121,152:0.56:273
chr14	67810033	rs2319777	C	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:116,109:0.48:225
chr14	67812474	rs3818467	T	C	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr14	67812631	rs2274336	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr14	67814201	rs28422832	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr14	67814218	rs369581902	TC	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.851;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr14	67814234	rs73284844	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.710;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr14	67819567	rs10718799	CA	C	254.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;QD=16.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	67819602	rs8020850	T	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr14	67831459	rs6573769	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr14	67847511	rs10132093	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr14	67849139	rs2296561	A	T	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.154;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:107,83:0.44:190
chr14	67860119	rs10139585	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr14	67862371	rs3818468	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr14	67912792	rs3742855	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr14	68022410	rs3742868	C	T	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	68028538	rs11628043	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.79;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	68029386	rs1885043	G	A	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:187,157:0.46:344
chr14	68035879	rs3825725	A	G	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:133,140:0.51:273
chr14	68035974	rs114221987	G	A	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:156,131:0.46:287
chr14	68036589	rs59589798	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:126,138:0.52:264
chr14	68038697	rs2236234	C	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	68038729	rs2236233	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	68038779	rs2236232	T	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:96,75:0.44:171
chr14	68039027	rs2236231	A	G	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	68040389	rs11625701	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr14	68041124	rs1555400	G	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr14	68042255	rs4902490	A	G	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	68042496	rs4902491	A	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	68042574	rs11158685	A	G	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:201,175:0.47:376
chr14	68044005	rs4902492	C	T	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr14	68045753	rs7152499	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr14	68045840	rs10635755	C	CTTCT	12573.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr14	68045935	rs6573781	G	A	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	68046602	rs6573782	C	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr14	68053149	rs749271	A	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:110,113:0.51:223
chr14	68053802	rs734028	T	C	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:272,265:0.49:537
chr14	68053977	rs6573783	A	C	11122.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr14	68066949	rs11547225	G	A	3323.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:244,174:0.42:418
chr14	68066979	rs7154825	C	T	7307.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	68087820	rs3742878	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.85;ReadPosRankSum=-0.255;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	68113293	rs742869	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:128,85:0.40:213
chr14	68115001	rs3742879	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	68123366	rs3742880	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.442;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr14	68126768	rs72723111	T	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr14	68159626	rs3742881	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr14	68191368	rs61991867	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr14	68192653	rs7156725	G	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	68193731	rs17852293	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr14	68196636	rs718212	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr14	68217724	rs742867	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:170,155:0.48:325
chr14	68234539	rs3742883	T	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:205,188:0.48:393
chr14	68236522	rs2295111	G	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr14	68241648	rs200033000	C	CAA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.085;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr14	68246855	rs2295106	T	A	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr14	68246876	rs2295107	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:105,65:0.38:170
chr14	68249499	rs2235967	C	T	2205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.616;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:174,119:0.41:293
chr14	68250280	rs17104663	T	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr14	68251934	rs3742884	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:126,88:0.41:214
chr14	68251991	rs3742885	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr14	68252669	rs7156492	G	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr14	68252979	.	C	CAAAAAAAAA	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.653;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr14	68257485	rs7143196	C	T	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:141,136:0.49:277
chr14	68264867	rs12891164	A	G	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:181,140:0.44:321
chr14	68270996	rs200345163	T	C	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.096;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:121,113:0.48:234
chr14	68273430	rs181576	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr14	68274020	rs181572	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr14	68274733	rs115034945	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr14	68280848	rs181563	A	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr14	68290372	rs17783124	T	G	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:76,94:0.55:170
chr14	68290426	rs28604984	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr14	68290464	rs28623567	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	68301767	rs34564590	G	GA	789.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr14	68301776	rs35183950	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr14	68331437	rs961700	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,43:0.50:86
chr14	68331675	rs1474939	A	T	1902.77	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=8.399;MLEAC=2;MLEAF=1.000;MQ=57.29;MQRankSum=-0.437;QD=22.92;SOR=3.590;set=HC	GT:AD:AF:DP	1/1:1,82:0.99:83
chr14	68773296	rs3837659	AC	A	7017.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:229,185:0.45:414
chr14	68773298	rs60593979	C	G	7026.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:227,185:0.45:412
chr14	68773353	rs2180770	G	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:125,104:0.45:229
chr14	68773469	rs3784104	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.285;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr14	68878369	rs10146772	C	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	68934690	rs2074562	A	G	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	68935789	rs2525505	T	C	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	68937283	rs139243313	T	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:150,115:0.43:265
chr14	68944343	rs67962762	CT	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.391;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:120,43:0.26:163
chr14	69012355	rs2525529	C	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:131,85:0.39:216
chr14	69117387	rs8021657	A	G	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	69117512	rs8023214	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	69328441	rs393673	A	G	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr14	69328594	rs412638	G	A	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr14	69328613	rs440689	C	T	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr14	69328800	rs7493294	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr14	69329116	rs424806	T	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	69329149	rs1742501	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	69345647	rs12586591	C	T	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr14	69352230	rs15993	G	A	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	69356932	rs1054200	G	T	8945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=2.199;QD=9.48;ReadPosRankSum=0.569;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:481,463:0.49:944
chr14	69376658	rs743128	A	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:91,94:0.51:185
chr14	69444517	rs35512297	T	TC	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.646;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr14	69445118	rs1983700	C	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	69445616	.	C	CGGGGCTGGGGGCTG	700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.175;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=10.681;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.536;QD=14.30;ReadPosRankSum=-2.139;SOR=3.188;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr14	69445646	rs4902685	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	69676963	rs76722968	C	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr14	69697070	rs77499793	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr14	69697222	rs35371795	G	A	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:181,182:0.50:363
chr14	69704553	rs8007859	G	T	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:130,133:0.51:263
chr14	69704667	rs139147031	G	T	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr14	69707787	rs35643457	C	T	1690.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:65,83:0.56:148
chr14	69727121	rs150774678	G	A	9924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.587;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:331,467:0.59:798
chr14	69798284	rs1147461	G	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr14	69799892	rs1275677	A	G	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:102,76:0.43:178
chr14	69813963	rs8011911	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	69814669	rs59840366	C	T	6420.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:329,323:0.50:652
chr14	69818599	rs35286134	C	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr14	69861462	.	T	TA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.095;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	69866021	rs2232053	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:134,127:0.49:261
chr14	69988954	rs10146531	T	G	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr14	69992873	rs8004574	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	69994473	rs1885400	C	G	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	70170319	rs74060288	G	A	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:111,88:0.44:199
chr14	70171418	rs2275124	T	C	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:194,201:0.51:395
chr14	70235741	rs3104	G	A	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	70235872	rs74061422	A	G	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:170,143:0.46:313
chr14	70245877	rs113692047	TA	T	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-0.169;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:129,39:0.23:168
chr14	70263648	rs4646285	C	T	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:173,187:0.52:360
chr14	70478173	rs139924326	CA	C	4900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.500;MQ=63.67;MQRankSum=23.713;QD=7.25;ReadPosRankSum=0.479;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:411,265:0.39:676
chr14	70478176	rs116375526	C	T	4909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.239;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=63.64;MQRankSum=23.809;QD=7.17;ReadPosRankSum=0.557;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:416,269:0.39:685
chr14	70496867	rs227402	C	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	70496919	rs34504720	C	CT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.065;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:61,32:0.34:93
chr14	70522353	rs998919	T	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	70522684	rs10142899	A	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr14	70527420	rs45554836	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr14	70530530	rs72729840	G	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr14	70530706	rs150956	C	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	70634087	rs2114024	A	G	10587.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr14	70712880	rs2296918	A	C	11838.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:1,442:1.00:443
chr14	70713586	rs150958502	T	G	4850.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:234,243:0.51:477
chr14	70713720	rs34309925	AATC	A	5134.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:132,133:0.50:265
chr14	70713858	rs61979492	T	C	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:211,279:0.57:490
chr14	70713981	rs12586570	A	G	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:92,125:0.58:217
chr14	70713992	rs4902799	C	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:117,78:0.40:195
chr14	70714162	rs4899340	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.63;QD=32.59;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	70714162	.	ATGTTTCTGGT	GTGTTTCTGGC,GTGTTTCTGGT	289	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=24;MQ=41.21;NF=9,19;NR=4,12;PP=286,289;QD=26.1129134509;SC=TATGAACAACATGTTTCTGGT;SbPval=0.79;Source=Platypus;TC=31;TCF=19;TCR=12;TR=13,31;WE=70714180;WS=70714152;set=Platypus	GT:AF:DP	0/1:0.42:31
chr14	70714172	rs4899341	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.929;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.637;MLEAC=1;MLEAF=0.500;MQ=50.62;MQRankSum=-4.209;QD=9.82;ReadPosRankSum=-1.738;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr14	70714259	rs7144638	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr14	70793004	rs4749	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.33;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	70793015	.	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-3.040;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr14	70795756	rs7157430	G	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	70795769	rs56128802	T	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	70795772	rs10648369	T	TAC	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	70924249	rs3751521	A	G	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	70924501	rs8010994	C	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:6,58:0.91:64
chr14	70924566	rs3829452	CA	GT	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	70924693	rs45480894	T	C	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.32;QD=45.05;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	70924696	rs77892318	GA	AG	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=53.90;QD=45.53;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	70924955	rs114864695	A	C	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr14	70925257	rs12436346	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.69;QD=31.57;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	70925818	rs2022624	T	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.98;QD=33.24;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	70936714	rs2293873	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	70937121	rs7152848	T	C	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	70937413	rs7153448	T	A	14019.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=44.09;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	70937420	rs7153459	T	C	14064.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=44.37;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr14	70937494	rs8015742	T	G	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=25.92;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr14	70937725	rs10467821	T	C	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr14	70937988	rs28473545	G	A	532.28	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:2,22:0.92:24
chr14	70991650	rs74062730	A	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.066;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:40,60:0.60:100
chr14	71050892	rs11158867	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr14	71051088	rs45523543	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr14	71052272	rs200725557	CT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.534;QD=5.55;ReadPosRankSum=-1.307;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr14	71052278	rs112233021	T	TTTTTC	879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-1.061;QD=13.96;ReadPosRankSum=1.911;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr14	71064314	rs1007402	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr14	71067156	rs5809489	GA	G	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.115;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr14	71067483	rs150061450	GGGCAGGAGAGAGGCAGGGGGT	G	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr14	71109153	rs4902834	C	G	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	71109276	rs3742852	G	C,T	10521.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.975;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.77;ReadPosRankSum=-0.421;SOR=0.283;set=HC	GT:AD:AF:DP	1/2:1,224,237:0.48,0.51:462
chr14	71197755	rs1476610	T	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	71199452	rs3829955	G	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:167,139:0.45:306
chr14	71202650	rs4141095	C	T	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	71208996	rs4899368	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	71216863	rs10630067	C	CAT	6054.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	71227913	rs3814872	A	C	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr14	71267345	rs4902857	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	71275773	rs3832971	GCCT	G	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=4.597;QD=1.26;ReadPosRankSum=-2.180;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr14	71275986	rs3742847	C	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	71374702	rs2526882	G	A	8947.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr14	71485692	rs1859914	A	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	71517327	.	G	GT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=2.441;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:156,47:0.23:203
chr14	72040525	rs6574016	G	A	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	72055468	rs1859643	A	C	8234.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=6.011;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-0.552;SOR=0.074;set=HC	GT:AD:AF:DP	1/1:3,319:0.99:322
chr14	72117156	rs8017465	T	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr14	72201985	rs2097887	C	A	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:206,175:0.46:381
chr14	72457344	rs76641444	G	A	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:253,223:0.47:476
chr14	72925171	rs2238186	G	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr14	72932330	.	G	GTGGA,GTGGATGGGTGGATGGA	4554.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=134;set=Intersection	GT:AF:DP	1/2:0.50,0.48:122
chr14	72936954	rs8012037	T	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	72939495	rs10131300	C	A	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	72944943	rs2239277	T	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr14	73079291	rs10649920	G	GAA	6141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.749;QD=15.83;ReadPosRankSum=-0.483;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:195,193:0.50:388
chr14	73086008	rs73308335	G	C	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:153,184:0.55:337
chr14	73138156	rs2286067	T	C	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:124,161:0.56:285
chr14	73181428	rs4903049	T	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	73198506	rs6574094	T	C	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	73220153	rs3742835	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr14	73240486	rs8015749	A	G	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	73240514	rs142838342	TTTTTAAGTCAGAATAATA	T	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr14	73358945	rs11158986	A	C	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr14	73360819	rs5809598	T	TTGTC	15990.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.67;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr14	73360949	rs2215901	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr14	73404795	rs2302587	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr14	73408355	rs3742832	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr14	73408369	rs3832967	A	AT	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr14	73409613	rs2333012	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr14	73412739	rs2246976	C	T	5224.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:259,268:0.51:527
chr14	73413965	rs2243443	G	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr14	73418732	rs3214336	GT	G	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr14	73422350	rs2806034	T	G	4338.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:234,228:0.49:462
chr14	73440864	rs12931	C	T	7500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.169;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:442,393:0.47:835
chr14	73626905	rs8011335	T	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr14	73664853	rs165932	G	T	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr14	73675703	rs28532025	G	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr14	73716774	rs177393	G	A	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:180,171:0.49:351
chr14	73721162	rs2293796	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr14	73721775	rs11628713	C	T	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:291,252:0.46:543
chr14	73727509	rs177389	T	G	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:121,135:0.53:256
chr14	73728957	rs177387	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.384;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr14	73730290	rs177385	C	A	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr14	73730594	.	A	G	3800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=8.735;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.956;QD=10.83;ReadPosRankSum=-0.824;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:238,113:0.32:351
chr14	73730596	.	A	C	3896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=10.233;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.018;QD=11.67;ReadPosRankSum=-0.320;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:231,103:0.31:334
chr14	73730602	.	T	TA	3625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.638;QD=11.02;ReadPosRankSum=0.364;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:237,92:0.28:329
chr14	73730605	.	T	C	3370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.611;QD=10.12;ReadPosRankSum=-0.194;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:240,93:0.28:333
chr14	73730609	.	T	C	3363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.428;QD=9.72;ReadPosRankSum=-2.007;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:242,104:0.30:346
chr14	73730840	.	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DP=381;set=Intersection	GT:AD:AF:DP	0/1:186,178:0.49:364
chr14	73732302	rs177383	C	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr14	73749074	rs61739599	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr14	73957682	rs10144461	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr14	73957772	rs10144469	A	G	2417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.043;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:120,119:0.50:239
chr14	73957981	rs150704374	G	GC	5224.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	73958375	rs758109	T	C	5035.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:237,245:0.51:482
chr14	73958812	rs3813563	T	C	12899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=1223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.152;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:558,629:0.53:1187
chr14	73961765	rs11365617	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=2.466;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	73961821	rs4519287	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr14	73961841	rs1019056	T	C	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr14	73963383	rs8014577	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-2.319;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr14	73975928	rs59705833	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr14	73989134	rs75069466	G	A	6580.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:363,338:0.48:701
chr14	73989859	rs1074501	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr14	74004105	rs113717902	A	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr14	74004595	rs72738342	C	T	9954.77	.	AC=1;AF=0.500;AN=2;DB;DP=1156;set=Intersection	GT:AD:AF:DP	0/1:626,524:0.46:1150
chr14	74004639	.	CTG	C	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=1055;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=4.257;QD=0.45;ReadPosRankSum=1.301;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:762,104:0.12:866
chr14	74036370	rs60568739	G	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr14	74036674	rs34765603	G	GC	3072.73	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:131,129:0.50:260
chr14	74040341	rs34585397	T	C	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:100,243:0.71:343
chr14	74061968	rs2010070	T	C	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:194,172:0.47:366
chr14	74083846	rs12891009	C	T	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.153;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:79,97:0.55:176
chr14	74156245	rs73297422	A	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:119,96:0.45:215
chr14	74188164	rs60635070	T	C	6816.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:293,330:0.53:623
chr14	74192165	rs10136165	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr14	74192994	rs2336074	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr14	74193427	rs887508	A	G	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:200,179:0.47:379
chr14	74196308	rs7155001	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr14	74196581	rs11847050	G	A	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:186,175:0.48:361
chr14	74196844	rs6574140	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr14	74203668	rs10143181	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	74206481	rs758774	T	C	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:243,182:0.43:425
chr14	74361126	.	CT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.773;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr14	74375956	rs2302136	A	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr14	74402850	rs8019443	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr14	74407811	rs11358501	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.461;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr14	74413243	rs34834232	A	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr14	74413424	rs114773903	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr14	74416698	rs11848954	C	G	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:280,278:0.50:558
chr14	74420127	rs3213692	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.617;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr14	74425056	rs3764859	C	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr14	74426284	rs71954619	G	GT	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.513;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:70,36:0.34:106
chr14	74428286	rs7141392	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:108,74:0.41:182
chr14	74428445	rs8500	G	A	4092.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:209,209:0.50:418
chr14	74433552	rs13743	A	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	74433859	rs3742813	T	C	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr14	74439495	rs11623794	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr14	74441537	rs2074933	T	C	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:129,134:0.51:263
chr14	74441684	rs2074932	G	A	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:111,109:0.50:220
chr14	74444090	rs201751093	G	GA	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.478;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr14	74449664	rs12431489	A	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr14	74454819	rs12434581	T	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr14	74512698	rs6574158	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr14	74514674	rs3784038	A	T	2207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.063;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:77,109:0.59:186
chr14	74522043	rs76845680	G	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;MQ=59.74;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr14	74523949	rs3742808	G	A	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:252,252:0.50:504
chr14	74524351	rs114251476	T	G	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=3.150;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:35,55:0.61:90
chr14	74526164	rs150649694	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr14	74527203	rs8017248	G	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr14	74531364	rs75386402	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr14	74531485	rs3815330	T	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr14	74537885	rs2072293	T	G	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,109:0.52:209
chr14	74537992	rs8008790	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr14	74539321	rs370924173	AAAAC	A	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-1.679;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:73,38:0.34:111
chr14	74541807	rs113016366	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr14	74544796	rs4903178	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr14	74551518	rs2006731	T	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=-1.110;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr14	74551526	rs2006732	C	A	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.217;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-0.735;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr14	74564468	rs2098032	G	T	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:101,92:0.48:193
chr14	74564605	rs2079635	T	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:151,142:0.48:293
chr14	74665543	rs10145171	G	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	74711705	.	G	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-0.931;QD=11.52;ReadPosRankSum=0.235;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	74711709	.	GAC	G	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-0.931;QD=10.92;ReadPosRankSum=0.949;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	74711883	rs35435463	C	T	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:160,114:0.42:274
chr14	74726515	rs11383441	G	GC	4085.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	74753107	rs1052012	C	G	8314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=0.992;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:327,223:0.41:550
chr14	74753112	rs1052008	C	T	8318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=2.112;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:343,226:0.40:569
chr14	74753141	rs1052006	C	T	5676.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:410,299:0.42:709
chr14	74753278	rs929449	T	C	27663.77	.	AC=2;AF=1.00;AN=2;DB;DP=1094;set=Intersection	GT:AD:AF:DP	1/1:1,1073:1.00:1074
chr14	74754503	rs74061801	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:76,34:0.31:110
chr14	74754601	rs74061802	T	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr14	74754757	rs56986616	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr14	74754936	rs57773157	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,58:0.47:124
chr14	74756117	rs147794426	CCA	C	529.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr14	74756248	rs74063804	A	G	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.926;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:72,50:0.41:122
chr14	74756709	rs11845047	A	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,78:0.38:203
chr14	74757019	rs11845976	C	T	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:273,225:0.45:498
chr14	74759122	rs74063810	G	A	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:120,129:0.52:249
chr14	74759175	rs74063811	T	C	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:80,91:0.53:171
chr14	74759202	rs74063813	G	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:88,87:0.50:175
chr14	74759529	rs1052000	G	A	4847.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:331,255:0.44:586
chr14	74759585	rs74063815	C	G	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:277,209:0.43:486
chr14	74759655	rs74063816	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:126,99:0.44:225
chr14	74759722	rs74063817	C	T	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-1.619;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr14	74760074	rs74063819	A	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr14	74760086	rs74063820	G	C	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr14	74761696	rs7144142	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr14	74761724	rs7144157	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr14	74761983	rs7148875	G	C	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:112,110:0.50:222
chr14	74762550	rs61757464	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:127,136:0.52:263
chr14	74762703	rs145096144	G	GAGA	885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.94;ReadPosRankSum=1.505;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr14	74763064	rs34992370	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:125,93:0.43:218
chr14	74763086	rs36031534	G	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:123,90:0.42:213
chr14	74764585	rs74063839	A	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr14	74764675	rs61744947	G	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:121,129:0.52:250
chr14	74764844	rs139038186	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr14	74764914	rs74063840	T	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr14	74764926	rs74063842	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr14	74766360	rs58272575	T	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.000;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:49,47:0.49:96
chr14	74767128	rs7158118	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	74874707	rs2884545	A	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:155,136:0.47:291
chr14	74876181	rs12590672	T	G	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:165,158:0.49:323
chr14	74876501	rs4026651	G	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr14	74961103	rs79408795	A	C	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:214,179:0.46:393
chr14	74968000	rs77015988	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr14	74968371	rs116738303	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr14	74970448	rs5809669	G	GC	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	74971650	rs36016624	TGACCCTTCGAG	T	7839.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:262,208:0.44:470
chr14	74971854	rs140848390	T	C	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:125,157:0.56:282
chr14	74973581	rs201664630	TGC	T	594.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.332;QD=9.01;ReadPosRankSum=0.954;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr14	74973583	.	C	CGCGCGT	583.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.955;QD=8.84;ReadPosRankSum=0.026;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr14	74973740	rs3815329	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr14	74975280	rs140606336	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr14	74976011	rs61729544	C	T	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:269,220:0.45:489
chr14	74976986	rs7160756	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr14	74983491	rs147745131	GT	G	2605.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:95,67:0.41:162
chr14	74983495	rs63395061	C	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr14	74983841	rs2302114	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr14	74989433	rs699371	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	74991855	rs862031	A	G	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	74991959	rs862030	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr14	74992019	rs114970212	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr14	75002775	rs4899522	G	A	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:96,117:0.55:213
chr14	75016482	rs2196861	T	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	75017650	rs934999	G	C	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	75019157	rs11622992	T	C	10567.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr14	75022192	rs150408645	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,78:0.46:170
chr14	75070493	rs3742793	G	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	75137664	rs2302832	T	C	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:97,117:0.55:214
chr14	75139419	rs115302452	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr14	75139936	rs11844127	C	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	75151047	rs9671386	G	A	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	75151487	rs7148840	G	A	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=7.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.549;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:66,52:0.44:118
chr14	75179734	rs2270425	C	G	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:195,152:0.44:347
chr14	75182937	rs2287400	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	75189979	rs36025752	C	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr14	75200697	rs3825708	G	A	11554.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr14	75230837	rs12885527	A	G	11682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=1301;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=2.121;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:662,604:0.48:1266
chr14	75231103	rs35864887	G	A	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.121;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:63,52:0.45:115
chr14	75276079	rs957345	C	G	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:141,118:0.46:259
chr14	75278211	rs12588415	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	75278302	rs8022046	G	A	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	75279395	rs2302834	T	A	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	75279461	rs2302835	G	A	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:151,162:0.52:313
chr14	75282873	rs5809679	AT	A	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.414;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:39,61:0.61:100
chr14	75283436	rs2287408	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr14	75287730	rs79860790	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.034;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr14	75329585	rs114515836	G	C	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:216,151:0.41:367
chr14	75349432	rs8007114	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr14	75355767	rs57898381	TA	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.53;ReadPosRankSum=-0.334;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	75359670	rs2230237	G	A	7778.77	.	AC=1;AF=0.500;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	0/1:384,403:0.51:787
chr14	75359757	rs58288168	ACT	A	2857.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:115,82:0.42:197
chr14	75361177	rs2070599	C	G	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:241,207:0.46:448
chr14	75365387	rs10136839	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	75367740	rs1799900	G	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr14	75373106	.	C	CG	68	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=5;HapScore=2;MGOF=83;MMLQ=24;MQ=58.28;NF=2;NR=0;PP=68;QD=43.5;SC=GGTCAGGAATCGGGGGTGGGG;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=2;WE=75373114;WS=75373104;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr14	75373475	rs10134885	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr14	75376013	rs60635665	A	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr14	75376036	rs10131976	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr14	75378296	rs3081755	GTGTGTA	G	3502.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	75378331	rs759057	T	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	75386530	rs60425478	T	TGG	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr14	75386576	rs2286913	G	A	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:65,105:0.62:170
chr14	75388183	rs7156590	C	T	5379.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:277,274:0.50:551
chr14	75412908	rs8005277	A	G	8701.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr14	75415194	rs2159907	G	C	5880.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	75470446	rs175041	C	A	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	75471317	rs10138123	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=2.100;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	75471392	rs376012405	ATTTTTTT	A	700.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=53.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	75471401	rs200354660	T	A	249.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.719;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr14	75471403	rs371500682	T	A	260.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.823;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=1.372;SOR=0.191;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr14	75471405	rs201252172	T	A	260.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.740;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.350;SOR=0.172;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr14	75471408	rs71426992	T	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=2.210;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr14	75483812	rs13712	T	C	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	75485406	rs175052	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	75485489	rs175053	A	G	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	75497130	rs175070	C	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	75505008	rs3742780	G	C	2850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-1.752;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:214,153:0.42:367
chr14	75505016	rs175075	A	G	13583.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.05;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr14	75506549	.	CATATATAT	C,CAT	663.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.93;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,8,11:0.42,0.58:19
chr14	75508280	rs34505842	GA	G	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=2.072;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr14	75513883	rs175081	T	C	8889.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	75514200	rs28756988	T	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr14	75528580	rs10129657	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr14	75537381	rs11546525	C	T	6148.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:325,315:0.49:640
chr14	75538217	rs3742778	G	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:159,106:0.40:265
chr14	75544101	rs12589815	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr14	75544189	rs12589876	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr14	75551254	rs175487	C	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	75551442	rs175486	A	C	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr14	75553655	rs175485	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	75572559	rs119077	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	75573064	rs34426692	GA	G	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-1.209;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr14	75574087	rs10146482	C	T	5251.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:274,274:0.50:548
chr14	75576520	rs8005071	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:157,110:0.41:267
chr14	75580152	rs175464	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	75587351	rs175454	T	C	2342.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.997;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.91;ReadPosRankSum=-0.730;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:4,94:0.96:98
chr14	75590822	rs8017642	G	A	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:195,165:0.46:360
chr14	75590846	rs175449	A	T	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:180,169:0.48:349
chr14	75601737	rs12435391	A	G	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.836;QD=7.56;ReadPosRankSum=1.355;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:103,74:0.42:177
chr14	75601823	rs141521366	C	CTAACA	1441.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr14	75601862	rs876402	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr14	75605792	rs1047418	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:98,101:0.51:199
chr14	75614504	rs3832966	A	ACCCG	1200.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr14	75745551	rs2239615	T	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr14	75745626	rs7101	C	T	6059.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:274,295:0.52:569
chr14	75746690	rs1046117	C	T	9337.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:497,455:0.48:952
chr14	75747407	rs3216792	AG	A	4115.73	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:138,151:0.52:289
chr14	75747830	rs2229024	C	G	8569.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:369,425:0.54:794
chr14	75758770	rs3742770	G	A	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr14	75758885	rs3742769	A	G	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr14	75759060	rs3742768	C	T	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr14	75760855	rs3742767	G	C	10882.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr14	75904660	rs3625	A	G	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	75989286	rs175722	G	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	76045193	rs148092740	GTC	G	1657.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr14	76045691	rs8011292	C	T	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:280,199:0.42:479
chr14	76072028	rs4903337	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr14	76107455	rs111451537	G	A	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:214,184:0.46:398
chr14	76129287	rs2302592	C	G	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr14	76156609	rs2303345	C	T	8686.77	.	AC=1;AF=0.500;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	0/1:516,458:0.47:974
chr14	76173860	rs1005224	T	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	76175565	rs1981898	C	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr14	76175594	rs1981899	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr14	76175666	rs8007792	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr14	76186376	rs2241442	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr14	76198818	rs5809726	CT	C	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=6.501;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.459;QD=7.90;ReadPosRankSum=-0.795;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:55,70:0.56:125
chr14	76200523	rs17183712	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr14	76201482	rs2288141	G	T	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.687;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:97,104:0.52:201
chr14	76203747	rs967889	A	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.310;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr14	76224153	rs2113577	T	A	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:119,84:0.41:203
chr14	76232398	rs2359870	T	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	76238254	rs57636956	AT	A	401.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.149;QD=7.43;ReadPosRankSum=0.531;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr14	76241922	rs2288143	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:101,76:0.43:177
chr14	76242089	rs1035614	A	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr14	76287061	rs12206	T	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	76330181	rs3742764	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr14	76330254	rs375638417	T	TAAAAAAAAA	72.25	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	76352929	rs1882827	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	76353290	rs114445770	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	76368544	rs1133834	T	C	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:265,192:0.42:457
chr14	76370545	rs34312760	C	CA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.291;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:117,37:0.24:154
chr14	76420657	rs141076256	C	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr14	76420881	.	AT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.391;QD=0.21;ReadPosRankSum=-1.042;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:209,42:0.17:251
chr14	76432136	rs3917187	T	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	76488551	rs2058941	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	76524970	rs59989662	CT	C	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.722;QD=7.10;ReadPosRankSum=1.288;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	76525515	rs2302856	A	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr14	76542856	rs7140892	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr14	76548783	rs137916626	GGACCTT	G	1372.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr14	76549377	rs7161722	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	76549752	rs8536	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr14	76619167	rs3813547	A	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	76638466	rs3783997	A	G	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	76644623	rs2121069	G	A	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	76662446	rs1900127	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	76720417	rs11846524	C	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	76906157	rs12432875	T	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr14	76929025	rs60031556	G	A	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:205,205:0.50:410
chr14	76948262	rs11480158	C	CT	1330.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr14	76948862	rs10134248	T	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr14	76957745	rs2361292	G	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	76957887	rs2361293	T	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	76966093	rs71429960	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr14	77229539	rs2270324	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	77236147	rs7142166	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	77236380	rs3815550	C	T	14142.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr14	77239567	rs2075772	A	G	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr14	77242101	rs72737517	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr14	77272992	rs45499197	C	G	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:205,197:0.49:402
chr14	77279064	rs8008004	A	G	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	77292992	rs926120	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:128,105:0.45:233
chr14	77294950	rs2142189	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:120,86:0.42:206
chr14	77295192	rs2067007	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr14	77302449	rs3742752	A	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr14	77305833	rs12893724	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	77311296	rs12896621	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	77311445	rs11620630	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	77319773	rs61011979	G	GGTGTGTGT,GGTGTGTGTGT	1726.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;QD=44.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:3,19,17:0.49,0.44:39
chr14	77327254	rs45536531	T	G	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:95,92:0.49:187
chr14	77332367	rs1882844	C	T	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	77332408	rs7160583	T	C	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr14	77333582	.	G	GGTGT	71.77	.	AC=1;AF=0.500;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;QD=35.89;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:0,2:1.00:2
chr14	77333630	rs141501598	T	TG	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.155;QD=9.48;ReadPosRankSum=0.600;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr14	77333852	rs2293805	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	77333880	rs4903504	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	77336352	rs74071016	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr14	77336428	rs11625243	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:79,97:0.55:176
chr14	77336524	rs909232	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr14	77336536	rs909233	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr14	77492891	rs879027	G	A	10008.77	.	AC=1;AF=0.500;AN=2;DB;DP=1032;set=Intersection	GT:AD:AF:DP	0/1:509,508:0.50:1017
chr14	77493647	rs371633333	AGCG	A	1623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.008;QD=12.12;ReadPosRankSum=1.856;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:86,48:0.36:134
chr14	77493761	rs200317113	TTGCTGC	T	524.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr14	77493788	rs28692724	C	T	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.882;QD=17.74;ReadPosRankSum=1.933;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr14	77493791	rs377151545	CTGT	C	1348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.817;QD=21.75;ReadPosRankSum=0.831;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr14	77493815	rs7156498	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.660;QD=4.04;ReadPosRankSum=-1.474;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr14	77493875	rs71428775	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr14	77571883	rs2111386	G	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.21;ReadPosRankSum=-1.990;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr14	77580068	rs759593	A	G	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr14	77580718	rs78114962	C	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	77600344	rs7141511	G	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr14	77685357	rs6574361	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr14	77686303	rs2287377	A	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	77697810	rs11295791	TA	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.636;QD=8.66;ReadPosRankSum=-0.762;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr14	77697967	rs375566	A	G	11058.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr14	77703057	rs403291	A	G	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	77704974	rs8010477	G	C	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	77705865	rs142814530	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:155,133:0.46:288
chr14	77709120	rs2287380	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr14	77709450	rs409109	T	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	77712261	rs59262654	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr14	77713036	rs2287383	C	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr14	77713070	rs8006732	T	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr14	77714668	rs74063865	T	C	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:119,105:0.47:224
chr14	77718384	rs55770237	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr14	77718386	.	TGTGCATGCGTGCATGCATGCGTGCATGCCTTGC	T	2974	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=4;MGOF=8;MMLQ=24;MQ=60.35;NF=0;NR=7;PP=2974;QD=20;SC=TGGAGCCCAGTGTGCATGCGT;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=7;WE=77718426;WS=77718374;set=Platypus	GT:AD:AF:DP	1/0:9,7:0.44:16
chr14	77737088	rs4903565	G	A	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:142,134:0.49:276
chr14	77745193	rs3209079	A	C	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:160,163:0.50:323
chr14	77746314	rs74062792	T	G	5693.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:316,294:0.48:610
chr14	77750057	rs2216089	T	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr14	77751925	rs2270419	C	T	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:240,218:0.48:458
chr14	77755221	rs2287387	T	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:102,105:0.51:207
chr14	77769124	rs182413979	T	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr14	77793207	rs7975	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:142,137:0.49:279
chr14	77794283	rs1046428	T	C	6147.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:296,317:0.52:613
chr14	77795311	rs5809824	CT	C	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr14	77795638	rs2270423	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	77796398	rs8177571	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr14	77796641	rs731346	G	A	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:227,199:0.47:426
chr14	77809939	rs3815628	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr14	77843353	rs10141317	G	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr14	77843363	rs10141114	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,63:0.43:146
chr14	77843384	rs3742737	G	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr14	77843814	rs11844594	T	C	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	77843971	rs45540040	C	T	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:160,165:0.51:325
chr14	77844265	rs45527334	G	A	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,92:0.45:206
chr14	77844592	rs10133824	T	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr14	77844869	rs4903576	A	G	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr14	77845121	rs2193595	A	G	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	77857672	.	CT	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.94;ReadPosRankSum=0.075;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr14	77872509	rs13379432	T	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr14	77872967	.	CACACACACACAG	C	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.16;MQRankSum=0.431;QD=3.27;ReadPosRankSum=-0.405;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	77872969	.	CACACACACAG	C	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.16;MQRankSum=-0.549;QD=5.87;ReadPosRankSum=1.221;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	77880305	rs10130481	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr14	77880524	rs10592368	CTT	C	2231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=11.695;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=27.22;ReadPosRankSum=1.626;SOR=1.243;set=HC	GT:AD:AF:DP	1/1:11,71:0.87:82
chr14	77880536	.	T	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=4.366;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.036;QD=7.37;ReadPosRankSum=0.533;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr14	77889040	rs8017215	T	C	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr14	77900165	rs34835605	C	T	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.833;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:90,100:0.53:190
chr14	77901758	rs113558496	G	GA	706.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.361;QD=12.40;ReadPosRankSum=0.239;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:10,47:0.82:57
chr14	77902418	rs2063997	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr14	77914674	rs10483882	T	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr14	77916205	rs760252	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr14	77917412	rs11159260	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	77919587	rs2364158	T	C	13364.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr14	77923783	rs11845345	C	T	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.484;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:96,102:0.52:198
chr14	77930752	rs11624314	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr14	77930855	rs34099277	A	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,98:0.49:198
chr14	77934587	rs3825694	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr14	77935659	rs11539461	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr14	77945053	rs142301765	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:157,131:0.45:288
chr14	77951124	rs3742728	C	T	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:143,132:0.48:275
chr14	77951364	rs7156032	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr14	77951431	rs74063377	C	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	77964500	rs11851856	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:89,90:0.50:179
chr14	77984573	rs926114	C	T	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	78002223	rs28628767	G	A	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-1.418;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:108,79:0.42:187
chr14	78018614	rs2178876	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	78028803	rs2364602	A	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:113,91:0.45:204
chr14	78036899	rs11344772	AG	A	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr14	78036935	rs4903606	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr14	78063440	rs12435993	A	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr14	78063694	rs115191009	T	G	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:173,175:0.50:348
chr14	78063823	rs34670650	AT	A	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;MQ=60.86;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	78170896	rs8021036	C	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr14	78174473	rs11159286	A	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr14	78176851	rs1076496	A	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:90,85:0.49:175
chr14	78183706	rs176959	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	78184566	rs176960	C	A	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr14	78187316	rs176965	A	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	78189181	.	CTTTTTT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.524;QD=5.43;ReadPosRankSum=-0.873;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr14	78197365	rs114763	C	T	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	78199019	rs12587825	T	A	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,85:0.64:133
chr14	78200392	rs10134425	G	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	78201079	rs5809849	CA	C	258.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.865;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr14	78226850	rs1477264	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	78285461	rs3214433	GT	G	1164.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr14	78325698	rs7149884	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr14	78353259	.	AC	A	1339.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.61;ReadPosRankSum=1.803;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr14	78353261	.	ACACACACACAC	A	1324.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=1.364;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr14	78353368	rs17826188	T	C	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:187,150:0.45:337
chr14	78365612	rs2287650	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr14	78366933	rs3837641	G	GAAC	9458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.133;QD=16.62;ReadPosRankSum=0.627;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:319,250:0.44:569
chr14	78366967	rs734654	A	G	8014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-3.160;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:418,412:0.50:830
chr14	78374327	rs6574411	G	A	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:132,140:0.51:272
chr14	78392008	rs11850022	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr14	78710044	rs11626446	G	A	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:192,169:0.47:361
chr14	78744823	rs10134857	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	78748366	rs10147289	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr14	78766814	rs4903742	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	78993170	rs12882387	A	C	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	79081400	rs57416351	T	C	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:286,196:0.41:482
chr14	79081492	rs61976094	A	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr14	79176133	rs12147248	G	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	79181046	rs1465481	A	T	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr14	79276733	rs4133797	C	A	356.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.336;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.275;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr14	79423452	rs7157841	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr14	79423631	rs35008707	C	T	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:233,196:0.46:429
chr14	79423744	rs3832964	C	CAT	1401.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr14	79432805	rs11851757	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr14	79433527	.	GTT	G	887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=2.365;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:54,42:0.44:96
chr14	79454221	rs168903	A	G	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	79454519	rs154325	G	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,69:0.46:151
chr14	79933813	rs74068679	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr14	80290425	rs932265	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	80669580	rs225014	T	C	2333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.215;QD=7.86;ReadPosRankSum=-2.339;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:171,126:0.42:297
chr14	80669639	rs5809986	T	TA	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=2.718;QD=5.59;ReadPosRankSum=1.551;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:59,51:0.46:110
chr14	81025522	rs1530771	C	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr14	81046810	rs71456210	A	AACGAGTT	2089.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr14	81223419	rs10149433	T	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	81251255	rs327463	T	C	4021.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:193,203:0.51:396
chr14	81297385	rs7156572	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr14	81304508	rs11849362	T	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr14	81329347	rs7146496	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr14	81360893	rs34375242	C	CA	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr14	81360958	rs2288347	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr14	81361138	rs74066925	G	T	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	81361977	rs8015542	C	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr14	81362142	rs11371676	G	GAAAA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.64;ReadPosRankSum=0.921;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	81371088	rs8016507	A	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr14	81422257	rs2239610	G	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:171,155:0.48:326
chr14	81528412	rs17111401	T	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	81558806	rs2075176	C	T	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	81558965	rs2241119	A	G	7510.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	81562808	rs2075178	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	81562998	rs2075179	T	C	16153.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr14	81574838	.	C	CT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.666;QD=1.33;ReadPosRankSum=1.718;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr14	81610583	rs1991517	G	C	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr14	81667852	rs8019633	A	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	81670558	rs8006015	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr14	81676360	rs201118427	C	CT	378.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=9.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-1.041;SOR=2.285;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr14	81676361	.	A	AC	378.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=9.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-1.201;SOR=2.285;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr14	81676362	rs199721074	G	T	387.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.635;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=9.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.331;SOR=2.285;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr14	81676370	rs368782223	CTTTATCATACA	C	380.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=9.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.249;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr14	81676382	rs372189020	GAATGGTCCCACAAGAAATAT	G	398.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-0.203;SOR=1.978;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr14	81686938	rs145594822	A	AT	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr14	81686978	rs113271579	GA	G	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	81712638	rs59453808	T	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	81737076	rs2241621	A	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:118,91:0.44:209
chr14	81743718	rs34323725	C	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:234,211:0.47:445
chr14	81744736	rs3813535	A	G	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	81864883	rs77569360	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	81952649	rs11851475	G	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:163,135:0.45:298
chr14	81954385	rs201342484	AT	A	757.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr14	81964410	rs7154698	C	T	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,120:0.49:244
chr14	81970416	rs8020513	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:67,95:0.59:162
chr14	81970512	rs8022069	T	C	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:221,208:0.48:429
chr14	82000125	rs75794283	C	A	10052.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:434,495:0.53:929
chr14	85995608	rs12590399	T	G	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=0.182;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr14	85995614	rs12587861	G	A	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-0.296;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr14	86088056	rs10141266	T	C	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr14	88400449	rs413750	T	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	88400486	rs1042029	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	88401213	rs421262	T	C	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr14	88406120	rs45626938	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.38;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	88406127	rs45567441	G	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.55;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	88406404	rs417276	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	88407716	rs34752717	T	TA	1145.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=0.806;QD=16.14;ReadPosRankSum=0.226;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:6,65:0.92:71
chr14	88407734	rs448805	G	C	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	88407875	rs421466	T	A	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	88407917	rs12432149	G	A	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	88411803	rs444902	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	88411947	rs367327	T	C	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	88414283	rs398343	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	88416390	rs440426	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	88416441	rs451073	C	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	88417095	rs11300320	GA	G	1265.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr14	88417161	rs431748	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	88417244	rs443019	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	88429690	rs17687109	A	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	88431704	rs17760463	T	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	88434893	rs17687364	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	88442582	rs76114917	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	88442646	rs76521220	A	G	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	88442712	rs34362748	C	T	14632.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr14	88448451	rs17797981	A	G	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	88448486	rs17797987	A	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	88448525	rs45568734	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	88448643	rs79515863	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	88448695	rs17797993	C	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	88450639	rs17798011	G	A	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	88450928	rs77468347	C	T	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	88452981	rs77466023	C	T	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	88453424	rs2119703	G	A	2661.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr14	88454469	rs74337989	A	T	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	88454910	rs2289511	G	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	88454937	rs74689143	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	88458573	rs78557856	A	G	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	88458745	rs78187751	C	T	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	88459280	rs143228205	C	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	88459434	rs111976362	G	T	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	88459448	rs111887056	C	G	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	88459467	rs112992946	C	G	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	88459656	rs76999174	A	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	88477413	rs6574978	C	T	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr14	88651826	rs144490234	A	AAC	2470.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:204,103:0.34:307
chr14	88651962	rs17762463	C	T	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:181,189:0.51:370
chr14	88658764	rs12898054	G	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	88701337	rs61976990	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	88729931	rs761971	G	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr14	88737193	rs1298237	T	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:196,182:0.48:378
chr14	88790152	rs742887	C	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	88792816	rs3742690	T	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	88792884	rs3742689	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.686;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr14	88852031	rs709886	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	88852166	rs4904448	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr14	88852279	rs5810413	TG	T	1863.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	88895669	rs386579	T	G	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	88934651	rs366476	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	88967336	rs816069	C	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	88983673	rs4904452	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	89016855	rs2896079	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr14	89037482	rs10682918	C	CAT	746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.699;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr14	89042180	rs1469602	T	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr14	89063167	rs2297124	A	G	5063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=2.236;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:283,270:0.49:553
chr14	89087278	rs35953031	T	TA	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.045;QD=4.22;ReadPosRankSum=0.645;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:87,57:0.40:144
chr14	89087801	rs941668	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr14	89088388	rs2983488	G	C	28364.73	.	AC=2;AF=1.00;AN=2;DB;DP=1128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,1115:1.00:1115
chr14	89089149	rs11382327	C	CT	561.74	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr14	89094243	rs1144916	G	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr14	89105287	rs1152383	T	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.206;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr14	89113177	rs12891429	A	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.52;ReadPosRankSum=-2.391;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	89151343	rs12888022	T	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr14	89171711	rs10142212	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	89258877	rs61982739	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr14	89297005	rs187142360	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr14	89310261	rs12890993	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr14	89591829	rs17777553	G	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr14	89629390	rs3742680	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr14	89647178	rs74717711	C	T	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.957;QD=9.40;ReadPosRankSum=1.213;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:118,110:0.48:228
chr14	89647259	rs140257053	G	GGCAGAGAACATGCATGGA	3394.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.87;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	89647297	rs34338248	T	TAC	612.74	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr14	89747473	rs7147341	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr14	89867978	rs12147030	T	C	17992.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,700:1.00:700
chr14	89884022	rs7422	A	C	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.685;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:80,44:0.35:124
chr14	90095384	rs115993300	T	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr14	90095445	rs100016	T	C	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:120,141:0.54:261
chr14	90097911	.	G	GA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.656;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr14	90263500	rs9026	T	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr14	90263525	rs1555616	C	A	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	90303065	rs8021113	T	C	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.436;QD=10.25;ReadPosRankSum=0.756;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:50,50:0.50:100
chr14	90303113	rs8019848	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr14	90303383	rs8020323	A	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr14	90303435	rs12437204	T	A	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=0.945;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:59,41:0.41:100
chr14	90303445	rs12437206	T	C	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=1.743;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:54,38:0.41:92
chr14	90390948	rs12100727	A	G	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.051;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:72,64:0.47:136
chr14	90390968	rs12101251	T	A	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.515;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:75,70:0.48:145
chr14	90391072	rs11159940	T	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.643;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:57,33:0.37:90
chr14	90398834	rs3833988	A	AT	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr14	90398907	rs8778	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr14	90399058	rs3752966	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=0.930;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	90399069	.	CAA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.000;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr14	90416517	rs77780222	T	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-1.407;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr14	90416607	rs45463491	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.28;ReadPosRankSum=0.520;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	90420298	rs3736860	C	T	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:192,214:0.53:406
chr14	90429749	rs3825663	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr14	90451303	rs1296406	A	G	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	90455460	rs35972056	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr14	90456188	rs2401863	G	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr14	90458397	rs35621567	GT	G	685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.190;QD=8.26;ReadPosRankSum=-2.275;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr14	90489298	rs11851131	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=2.147;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr14	90489419	rs146508707	CTGG	C	3296.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,87:0.47:184
chr14	90499324	rs728286	C	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=0.492;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	90509564	rs9488	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr14	90528797	rs7157583	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr14	90650474	rs35001608	G	A	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:193,160:0.45:353
chr14	90723109	rs6575119	T	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	90734826	rs11624246	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr14	90740324	rs34512486	ATCT	A	8619.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:293,228:0.44:521
chr14	90740588	rs10140761	G	C	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:144,101:0.41:245
chr14	90744672	rs10184	G	A	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:170,168:0.50:338
chr14	90745422	rs3737035	T	C	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:126,117:0.48:243
chr14	90756503	rs3742672	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	90767607	rs3825661	C	T	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:126,151:0.55:277
chr14	90767746	rs3742669	C	A	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:74,100:0.57:174
chr14	90767759	rs3742668	G	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr14	90767856	rs3742667	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	90769539	rs2149647	C	T	2185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.161;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:143,116:0.45:259
chr14	90770210	rs4904670	C	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	90863489	rs12886342	G	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,101:0.55:185
chr14	90865283	rs2300497	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr14	90865462	rs2300498	C	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	90866346	rs2268433	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr14	90870098	rs3729786	T	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr14	91007618	rs1294572	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	91007944	rs145392805	CAG	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.056;QD=0.42;ReadPosRankSum=0.938;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:424,46:0.10:470
chr14	91068444	rs188358863	G	A	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:138,122:0.47:260
chr14	91084338	rs754247	C	T	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=1.630;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:88,94:0.52:182
chr14	91110582	rs3830889	TACATAC	T	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	91113471	rs2277512	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	91113537	rs1286422	A	G	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	91123575	rs3742660	T	C	16016.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr14	91142816	rs45517739	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr14	91146670	rs12147094	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	91156151	rs942738	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr14	91161862	rs10146731	C	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:211,190:0.47:401
chr14	91165572	rs1749699	G	A	14632.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,569:1.00:569
chr14	91165606	rs1742100	G	A	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:172,160:0.48:332
chr14	91282452	rs2401918	T	G	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.11;ReadPosRankSum=1.261;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr14	91282470	rs943700	G	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.187;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:48,53:0.52:101
chr14	91365646	rs11380703	G	GA	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.828;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr14	91409615	rs111743702	A	AT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.512;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	91409618	rs200580839	T	TA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.083;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr14	91592748	rs57615276	C	CTTCTT	2811.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	91639611	rs11340262	AT	A	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.059;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:332,97:0.23:429
chr14	91642234	rs2295528	A	G	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr14	91642395	rs34302825	G	A	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:131,156:0.54:287
chr14	91690000	.	CT	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-2.120;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:121,37:0.23:158
chr14	91710562	rs71656519	GAC	G	322.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	91717214	rs11852149	C	T	3534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.302;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:185,179:0.49:364
chr14	91739081	rs941920	A	G	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	91744233	rs17796691	G	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr14	91751788	rs11341843	TC	T	14424.73	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr14	91763637	rs3742656	C	T	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr14	91763971	rs5810533	CT	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-2.642;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr14	91773494	rs1970911	G	A	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:177,141:0.44:318
chr14	91773568	rs1970912	T	C	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr14	91883267	rs1285844	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	91883499	rs1742546	G	A	9053.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr14	91883967	rs3742654	G	T	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:180,169:0.48:349
chr14	91884116	rs3742653	C	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr14	91884167	.	G	A	138.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr14	91925027	rs10135595	G	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:63,79:0.56:142
chr14	91927584	rs143831049	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.723;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	91927717	rs8006817	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:85,56:0.40:141
chr14	91928933	rs4904784	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	91928992	rs5020186	T	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.556;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr14	91929281	rs61490765	CTTAAT	C	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	91937143	rs10873409	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr14	91942318	rs139615837	C	CA	813.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr14	91942342	rs10145724	T	A	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	91942407	rs10145809	T	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	91948043	rs17127374	T	C	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.008;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:61,58:0.49:119
chr14	91948643	rs6575195	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	91957235	rs374882900	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.37;ReadPosRankSum=-0.308;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	92040589	rs34650717	TC	T	1178.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr14	92041075	rs1704614	C	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	92053395	rs2295789	G	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:101,112:0.53:213
chr14	92058445	rs1285637	G	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	92074545	rs1743159	T	A	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	92074856	rs1743158	C	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	92084004	rs1620238	C	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	92088016	rs1296082	G	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	92105643	rs1704630	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	92126443	rs55665101	ATC	A	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.688;QD=4.55;ReadPosRankSum=0.760;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr14	92126460	rs1704673	T	A	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr14	92174343	rs4605095	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	92185731	rs17783516	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr14	92189366	rs17127513	T	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr14	92191350	rs3814837	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr14	92251587	rs61990064	A	G	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:186,165:0.47:351
chr14	92264080	rs71120197	TA	T	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.224;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:20,59:0.75:79
chr14	92268531	rs10498631	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	92268615	rs2402073	T	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	92279983	rs17127600	T	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-2.220;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr14	92280037	rs10134181	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr14	92336775	rs929608	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	92343764	rs2430341	C	T	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	92353791	rs78277125	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr14	92403660	rs2474028	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr14	92420861	rs2430336	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.829;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr14	92441066	rs1051340	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=0.074;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr14	92454604	rs2273182	A	G	73.82	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	92460098	rs2273185	C	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr14	92461963	rs34736578	CT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.206;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr14	92473943	rs3818095	T	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr14	92477168	rs2277526	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr14	92491853	rs2295171	T	C	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr14	92537163	rs3092822	T	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr14	92537223	rs7158733	G	T	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:157,129:0.45:286
chr14	92537353	.	C	CG,CGCTGCTGCTGCTGCTGCT	4571.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=257;set=Intersection	GT:AF:DP	0/1:0.48:246
chr14	92537354	.	C	G	2601	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=23;MQ=60.18;NF=17;NR=28;PP=2601;QD=20;SC=GATAGGTCCCCCTGCTGCTGC;SbPval=0.5;Source=Platypus;TC=120;TCF=44;TCR=76;TR=45;WE=92537364;WS=92537342;set=Platypus	GT:AD:AF:DP	0/1:75,45:0.38:120
chr14	92537354	.	C	CTGCTGCTGCTGCTGCTG	4219.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=61.54;MQRankSum=4.924;QD=17.15;ReadPosRankSum=1.931;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:122,124:0.50:246
chr14	92546144	rs2003721	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	92547145	rs761551	G	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-3.137;QD=6.54;ReadPosRankSum=0.225;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr14	92547176	rs761552	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.032;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr14	92547425	rs761553	C	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.431;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr14	92548785	rs1048755	C	T	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:191,200:0.51:391
chr14	92548896	rs10146519	A	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr14	92549586	rs16999141	G	A	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-0.614;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:108,160:0.60:268
chr14	92549632	rs12590497	C	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,52:0.55:94
chr14	92555199	rs8003041	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr14	92559678	rs4904834	G	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	92560008	rs1997920	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr14	92560288	rs10606586	GTTT	G	495.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.612;QD=27.54;ReadPosRankSum=1.189;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr14	92560311	rs2402108	A	G	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.11;ReadPosRankSum=2.611;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr14	92562277	rs17847278	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr14	92562568	rs12147767	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr14	92563254	rs35079962	A	AT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.674;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr14	92582472	rs13350	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=1.437;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr14	92582655	rs11160044	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.053;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	92584021	rs36078150	C	CTTTT	779.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr14	92584064	rs12882784	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr14	92585205	rs7152991	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.512;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.196;QD=11.10;ReadPosRankSum=-0.932;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr14	92585304	rs34114160	C	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.000;QD=10.69;ReadPosRankSum=0.257;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr14	92585332	rs10649809	G	GAA	866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.630;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	92588002	rs3818263	T	G	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:118,157:0.57:275
chr14	92588155	rs10603293	ATTTT	A	2545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.912;QD=16.75;ReadPosRankSum=1.751;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr14	92588192	rs12886909	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr14	92588219	rs7148709	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr14	92624144	rs146590887	C	T	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:178,165:0.48:343
chr14	92627668	rs2025071	T	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr14	92627710	rs2025070	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	92792030	rs77385755	G	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr14	92792255	rs941646	G	A	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	92792432	rs941645	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	92905817	rs4900122	A	G	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	92909073	rs941650	T	C	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr14	92920371	rs7144273	C	T	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	92922713	rs7158400	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	92950061	rs75541565	C	G	2029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.37;ReadPosRankSum=-0.945;SOR=0.459;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr14	92958502	rs34605132	TG	T	2147.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	92959228	rs78254567	G	A	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	92959282	rs79685763	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	92959940	rs4900130	G	A	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:158,155:0.50:313
chr14	92960025	rs4904942	T	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	93118198	rs3814830	C	T	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:223,212:0.49:435
chr14	93118669	rs3742716	G	A	8331.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:390,403:0.51:793
chr14	93125756	rs114607614	C	A	9832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=1077;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.254;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:559,509:0.48:1068
chr14	93151596	rs114797792	C	A	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:166,213:0.56:379
chr14	93151680	rs79026328	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr14	93154537	rs71698059	TGGC	T	5075.73	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:149,136:0.48:285
chr14	93178191	rs1951708	A	G	28833.77	.	AC=2;AF=1.00;AN=2;DB;DP=1135;set=Intersection	GT:AD:AF:DP	1/1:0,1126:1.00:1126
chr14	93185283	rs187712106	A	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr14	93199080	rs2236264	C	T	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:258,238:0.48:496
chr14	93199203	rs1613441	T	A	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr14	93276654	rs1040835	T	C	7188.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	93276806	rs1040833	C	T	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	93282872	rs142530146	T	TCTTCG	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	93285962	rs12880298	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	93286291	rs10716250	AC	A	2297.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	93290723	rs3818256	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	93290856	rs2273646	T	C	15309.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	93290859	rs2273645	C	T	15228.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr14	93303604	rs4904994	C	T	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	93303850	rs113573267	T	TG	3381.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	93303854	rs74598769	T	C	3309.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=2.368;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	93303855	rs34061602	G	T	3260.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.95;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	93389403	rs7159323	A	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	93392834	rs7146118	C	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr14	93398031	rs9658655	G	C	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:383,351:0.48:734
chr14	93398078	rs9658656	G	A	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:270,244:0.47:514
chr14	93398717	rs9658662	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr14	93401074	rs9658670	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:235,172:0.42:407
chr14	93401178	rs941581	A	G	3603.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:194,186:0.49:380
chr14	93401316	rs7610	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	93407134	rs35502373	C	T	12173.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr14	93407248	rs11446	A	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	93407301	rs13316	C	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	93412609	rs1998054	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr14	93412743	rs2295394	G	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:137,129:0.48:266
chr14	93418155	rs2273392	TG	CC	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr14	93428802	rs2295393	T	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:101,89:0.47:190
chr14	93532665	rs370298561	ATG	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=0.528;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:163,24:0.13:187
chr14	93649501	rs1046099	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	93649552	rs114256363	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr14	93678592	rs76592347	T	C	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr14	93693422	rs2905	C	T	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:142,113:0.44:255
chr14	93712644	rs139992045	TAA	T	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.878;QD=11.26;ReadPosRankSum=1.865;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr14	93720181	rs8012209	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr14	93760123	rs11628391	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr14	93762162	rs2273639	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr14	93799284	rs146686071	ACCG	A	2516.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr14	93813726	rs114399408	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr14	93813837	rs115006280	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.28;ReadPosRankSum=1.221;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	93933974	.	CTTTTTTTTTTTT	C	845.73	.	AC=1;AF=0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.77;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr14	93943998	rs61992606	G	A	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:184,149:0.45:333
chr14	93953904	rs61992611	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr14	93953907	rs33942732	A	AT	1008.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:6,53:0.90:59
chr14	93954192	rs12884458	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr14	93962691	rs8006093	G	A	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	93994870	rs17094893	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr14	93994954	rs28420706	G	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:62,78:0.56:140
chr14	93998806	rs942068	C	A	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	94007075	rs1951716	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr14	94008753	rs12893237	A	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	94038131	rs79621087	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	94097287	rs2148563	G	A	9349.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr14	94103602	rs4905082	G	A	5457.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:280,279:0.50:559
chr14	94109808	rs74805071	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.343;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr14	94109829	rs943318	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-1.909;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr14	94152768	rs2296686	C	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr14	94160521	rs943323	C	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	94160611	rs960888	G	A	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:141,109:0.44:250
chr14	94171034	rs79884286	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:81,55:0.40:136
chr14	94187832	rs1887197	C	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:99,78:0.44:177
chr14	94192137	rs10873436	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr14	94245452	rs34914817	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr14	94245649	rs4905087	A	G	23067.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.69;ReadPosRankSum=-0.594;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:2,663:1.00:665
chr14	94245649	.	ATGC	GTGC,GTGT	2333	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=23;MQ=59.87;NF=158,59;NR=174,77;PP=2333,1719;QD=7.13184100165;SC=GGGGCTCACCATGCGTCACCT;SbPval=0.51;Source=Platypus;TC=337;TCF=159;TCR=178;TR=332,136;WE=94245660;WS=94245639;set=Platypus	GT:AF:DP	0/1:0.99:337
chr14	94245652	rs4900195	C	T	6227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.746;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:359,325:0.48:684
chr14	94391699	rs10141024	G	A	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	94400431	rs11625548	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-2.243;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr14	94405871	rs10873442	G	C	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:230,213:0.48:443
chr14	94406096	rs7155320	A	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr14	94410447	rs10134105	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr14	94417421	rs7147919	G	A	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:289,261:0.47:550
chr14	94417541	rs4277287	A	G	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr14	94417586	rs4483793	G	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr14	94419888	rs4243701	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	94423294	rs3765494	T	C	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	94423327	.	TG	AG	2124	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=26;MQ=59.9;NF=24,6;NR=36,26;PP=1725,2124;QD=29.3295202091;SC=AGAGACTGACTGACAGACACA;SbPval=0.67;Source=Platypus;TC=120;TCF=52;TCR=68;TR=60,32;WE=94423335;WS=94423317;set=Platypus	GT:AD:AF:DP	0/1:60,60:0.50:120
chr14	94423327	.	TG	TGACAG	2124	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=26;MQ=59.9;NF=24,6;NR=36,26;PP=1725,2124;QD=29.3295202091;SC=AGAGACTGACTGACAGACACA;SbPval=0.67;Source=Platypus;TC=120;TCF=52;TCR=68;TR=60,32;WE=94423335;WS=94423317;set=Platypus	GT:AD:AF:DP	0/1:47,32:0.41:79
chr14	94423327	rs66925826	T	A,TGACA	6858.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.32;SOR=0.838;set=HC	GT:AD:AF:DP	1/2:0,116,103:0.53,0.47:219
chr14	94464432	rs733166	A	G	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:186,209:0.53:395
chr14	94464489	rs10142728	G	A	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:204,207:0.50:411
chr14	94466081	rs4905137	C	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr14	94467549	rs60333700	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:171,152:0.47:323
chr14	94510200	rs74543970	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr14	94512415	rs8021300	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr14	94527232	rs75629036	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,54:0.54:100
chr14	94527525	rs11846519	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr14	94545746	rs61757452	G	C	5436.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:261,273:0.51:534
chr14	94554682	rs73351223	A	G	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.720;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:102,96:0.48:198
chr14	94563193	rs7157940	T	C	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	94563265	rs79237142	C	T	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:112,98:0.47:210
chr14	94564035	rs2896258	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.75;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	94564035	.	ATTCA	GTTCA,GTTCG	547	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=24;MQ=59.86;NF=41,19;NR=35,16;PP=547,479;QD=7.65488437562;SC=GTGAATAAGCATTCACGGATA;SbPval=0.54;Source=Platypus;TC=77;TCF=42;TCR=35;TR=76,35;WE=94564047;WS=94564025;set=Platypus	GT:AF:DP	0/1:0.99:77
chr14	94564039	rs2402407	A	G	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.481;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:89,81:0.48:170
chr14	94564058	rs2402408	G	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr14	94567032	rs3818119	C	T	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=36.02;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	94567032	.	CC	TC,TT	614	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=19;MQ=59.78;NF=42,19;NR=26,9;PP=614,261;QD=9.54075312569;SC=GTACCCACTCCCATAGGTTTG;SbPval=0.6;Source=Platypus;TC=71;TCF=43;TCR=28;TR=68,28;WE=94567041;WS=94567022;set=Platypus	GT:AF:DP	0/1:0.96:71
chr14	94567033	rs58664992	C	T	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.313;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:67,84:0.56:151
chr14	94581285	rs2239645	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr14	94582130	rs3833507	T	TGGCCATGGC	6693.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	94582926	rs2799	C	G	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:103,112:0.52:215
chr14	94594768	rs958187	T	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	94700138	rs4905172	C	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	94718206	.	T	G	491.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr14	94722764	rs6575403	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=0.852;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	94731380	rs116470249	G	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.328;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	94732107	rs3827899	T	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,80:0.49:162
chr14	94745083	rs5810667	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.951;QD=0.46;ReadPosRankSum=-1.084;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:122,25:0.17:147
chr14	94756794	rs941590	T	C	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:206,238:0.54:444
chr14	94772504	rs1042394	G	A	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:132,157:0.54:289
chr14	94776219	rs2228542	C	T	5718.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:280,285:0.50:565
chr14	94776221	rs2228541	A	C	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:279,263:0.49:542
chr14	94776387	rs2281520	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr14	94776401	rs11160168	T	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	94776441	rs11160169	C	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr14	94831028	rs34362280	G	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	94833033	rs1956172	T	C	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:214,181:0.46:395
chr14	94847415	rs6647	A	G	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr14	94909630	rs3818257	C	T	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	94912799	rs12888805	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:111,75:0.40:186
chr14	94912896	rs1885137	T	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,72:0.48:149
chr14	94914455	rs10129672	A	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.58;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	94929541	rs2224418	G	A	4039.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-0.859;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:2,159:0.99:161
chr14	94930956	rs12891900	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	94930980	rs11628686	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr14	94930984	rs13379439	G	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr14	94931016	rs8020984	T	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	94931105	rs11628722	A	G	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	94933377	rs28694507	A	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=0.736;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	94933473	rs28618118	C	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr14	94933640	rs28583900	A	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:80,103:0.56:183
chr14	94933695	rs17090921	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,88:0.52:168
chr14	94933709	rs6575433	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:86,78:0.48:164
chr14	94935901	rs12879019	G	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:181,207:0.53:388
chr14	94935985	rs59773088	T	C	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:208,135:0.39:343
chr14	95028020	rs910352	C	T	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:109,111:0.50:220
chr14	95029852	rs5508	G	T	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:104,125:0.55:229
chr14	95033671	rs3827893	A	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr14	95034342	rs2070777	T	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr14	95053849	rs6113	T	C	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:413,346:0.46:759
chr14	95053863	rs6118	C	T	5785.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:404,303:0.43:707
chr14	95053890	rs6115	G	A	20037.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.31;ReadPosRankSum=1.475;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,583:1.00:584
chr14	95053890	.	GC	AC,AT	2560	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=27;MQ=60.0;NF=129,52;NR=173,75;PP=2560,1841;QD=20;SC=CCCAGCCAGAGCATCTTCTTC;SbPval=0.54;Source=Platypus;TC=306;TCF=132;TCR=174;TR=302,127;WE=95053899;WS=95053880;set=Platypus	GT:AF:DP	0/1:0.99:306
chr14	95053891	rs6111	C	T	4930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-3.208;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:330,254:0.43:584
chr14	95054012	rs6119	A	G	4607.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:239,228:0.49:467
chr14	95054176	rs6112	T	C	20354.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr14	95057270	rs6107	G	A	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	95058360	rs6109	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	95058462	rs6116	A	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:66,79:0.54:145
chr14	95058631	rs6108	A	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	95078677	rs1884082	G	T	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.441;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:79,68:0.46:147
chr14	95080786	rs56871159	G	A	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr14	95080803	rs4934	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:158,132:0.46:290
chr14	95085465	rs8004988	C	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	95107918	rs149856507	T	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:194,152:0.44:346
chr14	95107973	rs4905226	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:124,116:0.48:240
chr14	95236139	rs145932252	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.922;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chr14	95560541	rs141740313	AC	A	971.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr14	95562577	rs61729797	C	T	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:160,136:0.46:296
chr14	95566068	.	TACACACACACACACACACAC	T,TACACACACACACACAC	818	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=27;MQ=60.0;NF=15,15;NR=6,6;PP=818,99;QD=39.0952380952;SC=TCCCTCCAGTTACACACACAC;SbPval=0.85;Source=Platypus;TC=36;TCF=22;TCR=14;TR=21,21;WE=95566097;WS=95566058;set=Platypus	GT:AF:DP	0/1:0.58:36
chr14	95566087	.	AC	A	1373.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=4.413;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.863;QD=21.81;ReadPosRankSum=2.973;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:24,39:0.62:63
chr14	95566089	.	ACACACACACACACACACAC	A	977.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.926;QD=15.52;ReadPosRankSum=2.721;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr14	95566108	.	C	A	1492	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=1;MGOF=87;MMLQ=26;MQ=60.03;NF=59;NR=27;PP=1492;QD=17.7531536343;SC=CACACACACACAAACTTACCA;SbPval=0.48;Source=Platypus;TC=88;TCF=61;TCR=27;TR=86;WE=95566116;WS=95566098;set=Platypus	GT:AD:AF:DP	1/1:2,86:0.98:88
chr14	95571635	rs371156380	GA	G	1288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=13.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.530;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:60,89:0.60:149
chr14	95572075	rs8019857	C	T	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.466;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:224,127:0.36:351
chr14	95574594	rs34975585	G	GT	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.555;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr14	95577856	rs17091823	T	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr14	95578675	rs2297730	T	C	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:242,213:0.47:455
chr14	95579369	rs141723381	G	GA	424.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr14	95579638	rs57681406	G	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr14	95582086	rs114947750	C	A	6185.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:280,308:0.52:588
chr14	95593159	rs75156371	CAA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.29;ReadPosRankSum=1.217;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	95659481	rs10142477	T	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-0.406;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr14	95660380	rs73333233	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr14	95662753	rs115351034	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr14	95675703	rs73333260	G	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:127,102:0.45:229
chr14	95682152	rs367902287	CTGTGTGTGTGTGTGTG	C,CTGTGTGTGTG	173.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	0/1:0.30:40
chr14	95876097	rs3742344	C	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr14	95884255	rs10130647	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr14	95898486	rs112612004	G	GA	818.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-1.195;QD=7.31;ReadPosRankSum=0.859;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:65,47:0.42:112
chr14	95898487	rs1187747	G	A	1301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.115;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:63,51:0.45:114
chr14	95898607	rs17092197	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	95898675	rs8015054	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr14	95899477	rs10139523	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr14	95903027	rs729667	G	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	95903343	rs57883787	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr14	95905587	rs114948425	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr14	95905862	rs114976101	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr14	95906023	rs17828632	G	A	9270.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:431,449:0.51:880
chr14	95906276	rs144731675	G	T	4181.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:213,198:0.48:411
chr14	95906441	rs910791	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,62:0.48:128
chr14	95911060	rs8007261	C	T	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:52,97:0.65:149
chr14	95912172	rs8013258	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr14	95912285	rs28526182	C	T	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:118,147:0.55:265
chr14	95912426	rs17092283	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:86,80:0.48:166
chr14	95916566	rs10148435	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr14	95922182	rs10162578	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr14	95923354	rs143318755	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr14	95923421	rs375479710	CAA	C	2048.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=11.221;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.917;QD=18.29;ReadPosRankSum=0.280;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:21,91:0.81:112
chr14	95923670	rs2024863	A	C	14007.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.53;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr14	95923756	rs36203973	GGTGTGTGTGT	G	870.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr14	95932223	rs12434921	A	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr14	95932628	rs4900270	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:97,79:0.45:176
chr14	95999820	rs3825546	T	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:235,174:0.43:409
chr14	95999998	rs749742	G	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr14	96009307	rs716315	C	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:94,98:0.51:192
chr14	96009356	rs60849464	C	T	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:154,131:0.46:285
chr14	96102922	rs115522496	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.08;ReadPosRankSum=0.210;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	96103115	rs11160282	C	T	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=1.511;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:51,61:0.54:112
chr14	96103184	rs201435254	CG	C	1788.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:98,66:0.40:164
chr14	96131432	rs1743491	A	G	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr14	96131575	rs59088277	T	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	96134589	rs7151040	C	T	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr14	96136775	rs2296310	C	A	8290.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr14	96136794	rs2249778	A	G	8801.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr14	96137935	rs911678	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	96152728	rs11160284	T	C	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:92,82:0.47:174
chr14	96157187	rs1064017	G	A	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:311,200:0.39:511
chr14	96157331	rs2075770	G	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr14	96157482	rs1743530	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	96157698	rs1748958	A	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	96178173	rs2296311	G	A	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	96179118	.	GA	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.223;QD=0.15;ReadPosRankSum=0.587;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:188,40:0.18:228
chr14	96180242	rs1122138	C	A	10454.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,401:1.00:402
chr14	96180373	rs75353825	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:253,305:0.55:558
chr14	96556914	rs2093722	T	C	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:217,169:0.44:386
chr14	96557121	rs10148419	T	C	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr14	96671139	rs1799722	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:119,74:0.38:193
chr14	96671207	rs71103505	GGGTGGGGAC	G	4392.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	96703347	rs2069577	C	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr14	96703386	rs2242958	A	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr14	96707457	rs5224	A	G	15240.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr14	96728916	rs885842	C	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=2.815;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	96730142	rs2071084	A	G	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	96734636	rs190155319	G	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr14	96757361	rs10454690	T	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	96758160	rs2275022	C	T	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	96761514	rs45468796	T	A	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	96761557	rs1770547	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	96769731	.	TCAA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr14	96770952	.	CA	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.291;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr14	96771959	rs2289622	A	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	96781912	rs9323945	T	C	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	96783464	rs17094014	C	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	96783727	rs17094017	A	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	96790337	rs34296665	T	TA	2596.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:5,118:0.96:123
chr14	96794877	.	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.704;QD=0.69;ReadPosRankSum=2.231;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr14	96795997	rs17094019	G	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	96797724	rs1822372	G	A	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	96813703	rs4905483	A	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	96858667	rs3742473	A	G	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	96912719	rs73351103	G	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr14	96916232	rs11424079	G	GT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.454;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	96922575	rs372405222	CAA	C	195.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-0.732;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr14	96922752	rs2369679	C	G	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	96939108	rs60920648	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr14	96945082	rs73351158	G	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	96987437	rs10139164	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	96993995	rs7146883	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.684;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr14	96998643	.	G	GTT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=1.582;QD=3.57;ReadPosRankSum=-0.325;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr14	97002464	rs190312449	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=1.162;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr14	97003152	rs141537738	G	GTATA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=1.017;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	97304025	rs10132650	A	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.774;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr14	97312642	rs1951311	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	97313770	rs143447703	T	TA	442.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr14	97319329	rs143300010	AG	A	2425.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr14	97327098	rs10651861	T	TTG	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr14	97397509	rs28709257	G	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr14	98217929	rs12893126	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr14	98435696	rs2124843	T	C	15315.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr14	98444253	rs8015127	C	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	98444369	rs8016584	T	C	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	98444438	rs112907746	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr14	99392468	rs200318	C	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	99641198	.	C	T	294.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr14	99641543	.	GCTC	G	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.863;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:250,34:0.12:284
chr14	99642647	rs2487507	T	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	99698001	.	C	T	287.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr14	99871811	.	C	T	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=1.557;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:50,58:0.54:108
chr14	99871811	.	CT	TG	494	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=14;NR=24;PP=494;QD=14.4070493385;SC=CATTTAGACACTAAATAGCTG;SbPval=0.63;Source=Platypus;TC=70;TCF=27;TCR=43;TR=38;WE=99871820;WS=99871801;set=Platypus	GT:AD:AF:DP	0/1:32,38:0.54:70
chr14	99871812	rs1262304	T	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	99876505	rs1047351	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	99879405	rs147357298	A	G	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:122,187:0.61:309
chr14	99880193	rs149058130	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr14	99924727	rs115281851	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:106,117:0.52:223
chr14	99924979	rs67963270	TAA	T	991.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr14	99929801	rs2273386	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:90,68:0.43:158
chr14	99932071	rs34435718	T	C	2792.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:106,138:0.57:244
chr14	99962099	rs142910964	A	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,65:0.45:145
chr14	99981858	rs11621993	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr14	99983502	rs142316560	G	C	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,64:0.44:147
chr14	99988724	rs2400681	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	100001003	rs10151574	T	C	12067.77	.	AC=1;AF=0.500;AN=2;DB;DP=1259;set=Intersection	GT:AD:AF:DP	0/1:628,619:0.50:1247
chr14	100002473	rs12882209	A	G	9823.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr14	100039109	rs7143453	C	G	3596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.339;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:217,186:0.46:403
chr14	100069742	rs8007401	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	100125721	rs7145262	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,60:0.50:120
chr14	100126575	rs112835805	C	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr14	100134485	rs73348577	C	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr14	100135306	rs12436072	G	A	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr14	100150975	rs61984440	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr14	100158241	rs4900442	C	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-1.207;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr14	100161759	rs144734162	C	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.257;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:62,50:0.45:112
chr14	100166228	rs3742377	G	A	6008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.537;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:341,304:0.47:645
chr14	100174092	.	AT	A	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.458;QD=2.24;ReadPosRankSum=0.693;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr14	100184569	rs75331313	C	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr14	100184589	rs7151522	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr14	100344698	rs1191118	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	100363336	rs17652784	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	100363671	rs2273707	GA	CG	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	100376502	rs10140426	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	100380948	rs2250718	T	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	100384232	rs2273704	A	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	100387242	rs34263849	A	AT	7706.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr14	100402326	rs3215696	ATTG	A	1477.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr14	100404067	rs2295788	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr14	100404351	rs2295787	T	C	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	100405757	rs2236282	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr14	100406193	rs4900449	T	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr14	100438322	.	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.126;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr14	100438325	.	C	CCCG	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.639;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr14	100563943	rs3206354	G	A	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	100568465	rs149445748	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr14	100592959	rs726514	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr14	100593213	rs2295857	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr14	100599164	rs941897	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr14	100603910	rs143859818	G	T	4096.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:204,200:0.50:404
chr14	100607360	rs1951486	T	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:72,71:0.50:143
chr14	100608274	rs4905933	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	100609988	rs140228534	GGGCTGCACTGGTCAT	G	4227.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:105,109:0.51:214
chr14	100610127	rs58103906	A	G	5170.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:240,261:0.52:501
chr14	100615665	rs4905936	T	C	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	100625902	rs7157599	C	T	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr14	100740904	rs4905942	G	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	100759046	rs3825555	C	A	6991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=1.012;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:287,332:0.54:619
chr14	100759738	rs3809409	A	C	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:146,111:0.43:257
chr14	100772626	rs7150817	C	T	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=2.176;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:127,71:0.36:198
chr14	100792093	rs9324019	C	G	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,100:0.45:221
chr14	100792220	rs7155877	C	T	24845.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:2,957:1.00:959
chr14	100792482	rs1951519	C	A	14381.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr14	100794915	rs8010354	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr14	100794951	rs369899500	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr14	100795338	rs8015259	G	C	6312.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:333,324:0.49:657
chr14	100795456	rs116237411	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr14	100795630	rs4905950	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr14	100795663	rs10147903	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr14	100801423	rs2234532	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	100803364	rs2234530	A	G	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:145,145:0.50:290
chr14	100803655	rs2234528	C	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr14	100808493	rs5810992	G	GA	3308.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	100808510	rs1373	T	A	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.747;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:80,95:0.54:175
chr14	100808845	rs9453	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr14	100813077	rs941923	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr14	100820980	rs1009812	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	100826773	rs2234524	C	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr14	100831835	rs1998902	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.12;ReadPosRankSum=-1.437;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	100832065	rs34767407	CT	C	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=28.62;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	100832069	.	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.503;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr14	100832282	rs2146105	C	G	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr14	100832391	rs724391	T	C	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:141,115:0.45:256
chr14	100847523	rs2181170	T	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr14	100847707	rs2273800	A	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:157,124:0.44:281
chr14	100847930	rs3742387	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:137,119:0.46:256
chr14	100934326	rs6575783	T	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr14	100934602	rs4905966	C	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr14	100995793	rs7493442	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr14	100996312	rs13065	T	C	15729.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:2,614:1.00:616
chr14	101005215	rs12893951	T	C	15724.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr14	101005236	rs12892571	A	G	14438.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr14	101007072	rs6575788	C	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	101010204	rs4073549	T	C	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:222,164:0.42:386
chr14	101012762	.	C	G	449	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=3;HapScore=2;MGOF=87;MMLQ=23;MQ=57.48;NF=16;NR=3;PP=449;QD=25.4616427656;SC=CCTCGCCCCGCCCCGGCCCTC;SbPval=0.94;Source=Platypus;TC=32;TCF=22;TCR=10;TR=19;WE=101012770;WS=101012752;set=Platypus	GT:AD:AF:DP	1/1:13,19:0.59:32
chr14	101034190	rs61993005	G	A	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:132,169:0.56:301
chr14	101034419	rs58030748	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	101036052	rs7141087	T	C	13611.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr14	101036074	rs10140554	C	G	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:280,193:0.41:473
chr14	101138230	rs8011237	A	C	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:165,159:0.49:324
chr14	101193523	rs114490877	T	G	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.562;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:127,95:0.43:222
chr14	101194944	rs10151914	T	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	101198417	rs6575799	A	G	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr14	101200445	rs17577779	T	C	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	101200645	rs1802710	T	C	27718.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=1236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=25.78;ReadPosRankSum=-0.230;SOR=0.521;set=HC	GT:AD:AF:DP	1/1:5,1070:1.00:1075
chr14	101300946	rs1053896	T	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	101311731	rs139003317	CCCT	C	9760.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr14	101347762	rs111241221	G	A	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:158,170:0.52:328
chr14	101349017	rs6575805	A	G	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:222,168:0.43:390
chr14	101377736	rs9324026	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	101403072	rs1956732	T	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=1.550;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr14	101403075	rs1956731	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=1.550;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr14	101406011	rs1951026	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr14	101411953	rs12433065	A	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.867;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr14	101412173	rs11847325	G	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	101418192	rs10713875	TG	T	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.27;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	101421903	rs72700527	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr14	101429568	rs16791	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr14	101429659	.	G	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=18;MQ=60.0;NF=0;NR=3;PP=22;QD=18.9237375157;SC=ATTATGAAATGTGAGGTGAGG;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=101429667;WS=101429649;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr14	101431194	rs4547276	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr14	101432440	rs111435301	C	CAGA	6685.73	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:182,173:0.49:355
chr14	101433552	rs2145502	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr14	101435371	rs12432302	A	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr14	101436159	rs34955121	GT	G	1143.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr14	101439870	rs1956727	G	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr14	101439916	rs1956726	T	G	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.707;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:58,105:0.64:163
chr14	101441309	rs33946843	AGATT	A	492.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr14	101442218	rs12893444	A	G	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:188,208:0.53:396
chr14	101442692	rs28586880	T	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=0.732;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	101447517	rs10131435	A	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr14	101448458	rs7151828	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,97:0.52:186
chr14	101450219	rs111954170	G	A	4280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.314;QD=10.57;ReadPosRankSum=0.152;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:188,217:0.54:405
chr14	101452574	rs4906029	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr14	101488533	rs8011965	G	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr14	101491216	rs57895741	T	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	101492224	rs7141987	T	C	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	101493300	rs10132943	G	A	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	101495787	rs4906031	G	A	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	101496145	rs9324030	A	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	101498522	.	C	CTGT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.39;ReadPosRankSum=0.652;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr14	101498525	.	G	T	95.82	.	AC=1;AF=0.500;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.97;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	101512974	rs10140057	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr14	101514371	rs10132916	T	C	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	101514950	rs10144193	A	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=12.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.325;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr14	101518910	rs4906032	A	G	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	101520527	rs28752084	A	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr14	101532217	rs10144831	G	A	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	101532461	rs73353189	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr14	102018946	rs17100344	A	G	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:128,106:0.45:234
chr14	102018963	rs60082567	G	C	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:148,142:0.49:290
chr14	102019157	rs12147061	A	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr14	102028664	rs147534254	C	T	6492.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:367,335:0.48:702
chr14	102196930	rs12050380	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr14	102197694	rs72715630	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.044;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr14	102198596	rs3825559	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,50:0.35:141
chr14	102198689	rs45481791	C	T	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:217,165:0.43:382
chr14	102229440	rs75376491	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr14	102285546	rs67328576	TC	T	164.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr14	102298202	rs10152015	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,70:0.47:150
chr14	102322900	rs34486272	A	AC	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	102349542	rs1741126	G	T	132.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	102356475	rs1904298	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr14	102359489	rs2720219	A	G	12622.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,499:1.00:500
chr14	102359568	rs2749902	A	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr14	102360916	rs2251246	G	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:182,163:0.47:345
chr14	102387599	rs730573	A	C	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-0.279;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr14	102442247	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-2.137;QD=1.54;ReadPosRankSum=-0.291;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr14	102454933	rs4906172	C	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	102458028	rs2749894	C	T	2037.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.062;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.97;ReadPosRankSum=-0.590;SOR=0.298;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr14	102458052	rs10138457	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	102494045	rs34338935	G	T	5058.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:232,236:0.50:468
chr14	102494586	rs4906173	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	102496352	rs2253998	C	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	102496394	rs60087609	A	AGTGTGTGT,AGTGTGTGTGT	1752.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	1/2:0.37,0.60:43
chr14	102500244	rs17512713	G	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	102506783	rs10147313	G	C	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:165,134:0.45:299
chr14	102508056	rs10129889	C	A	15903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-0.543;SOR=0.306;set=HC	GT:AD:AF:DP	1/1:1,626:1.00:627
chr14	102510396	rs200392758	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr14	102510428	rs1190606	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr14	102510874	rs2273440	G	A	9377.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	102514227	rs13749	T	C	6843.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:270,344:0.56:614
chr14	102514713	rs941792	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	102515015	rs1004903	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr14	102548384	rs6575895	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	102549262	rs10782495	A	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr14	102549873	rs7156529	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr14	102550069	.	T	TAA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.827;QD=1.44;ReadPosRankSum=0.160;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr14	102550402	rs35565517	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr14	102551795	rs35308930	T	TTAA	7721.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	102552773	rs8004640	A	G	25361.77	.	AC=2;AF=1.00;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	1/1:0,973:1.00:973
chr14	102568367	rs8005905	T	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,80:0.52:154
chr14	102659667	rs8003556	T	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	102675350	rs6575900	G	C	12542.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr14	102692657	rs8022651	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	102692813	rs77698399	G	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr14	102695563	rs3087686	A	G	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	102695693	rs2236493	T	C	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	102698034	rs7152076	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr14	102700028	rs34965156	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:123,96:0.44:219
chr14	102718052	rs2274815	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	102718419	rs28607975	A	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	102732041	.	A	AGTGTGGTGGAAGACAGGTCAGTGTGGGGGGCCACACAGCTTGGACAGTGCTCCAGACAACTGTAAGGGAAGTATC	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=16.107;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-4.031;QD=2.43;ReadPosRankSum=1.670;SOR=2.778;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr14	102792386	rs7158731	T	C	24553.77	.	AC=2;AF=1.00;AN=2;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.79;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,952:1.00:952
chr14	102792631	rs7158139	G	A	18989.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,732:1.00:732
chr14	102803070	rs369596864	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.294;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr14	102805049	rs78127723	G	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr14	102805537	rs115365685	G	A	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,97:0.48:202
chr14	102825829	rs144884749	GG	CC	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;JOINED;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr14	102894559	.	GTT	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.383;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr14	102894593	rs1309353	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	102918686	rs1190554	T	C	14180.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr14	102964654	rs2403058	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	102965047	rs3742437	G	A	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	102965435	rs3783381	A	G	54952.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=1260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.061;QD=44.64;ReadPosRankSum=1.773;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:2,1229:1.00:1231
chr14	102965437	rs3783382	A	T	54952.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=1253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.061;QD=44.90;ReadPosRankSum=1.864;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:2,1222:1.00:1224
chr14	103005921	rs76905101	C	G	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	103177420	rs3783383	G	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	103187767	rs58525159	C	T	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	103192774	rs372942415	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.120;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:95,49:0.34:144
chr14	103336804	rs28670970	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	103341865	rs10668366	G	GT	59.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	103342049	rs1131877	T	C	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	103352683	rs28410620	C	T	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	103357603	rs2273393	G	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	103369836	rs116717323	G	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr14	103370163	rs9671376	C	T	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	103370348	rs9671387	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	103388939	rs59793431	C	G	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	103388952	rs57687948	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.145;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.665;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr14	103388999	rs2295828	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	103389003	rs2295829	G	C	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	103395123	rs7140429	C	T	12391.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:2,481:1.00:483
chr14	103396706	rs148815688	C	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	103411884	rs35998037	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.63;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	103412268	rs2403107	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	103413941	rs8007924	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	103417030	rs12100549	C	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	103434530	rs2093414	T	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.82;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	103434739	rs2896462	A	G	24272.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr14	103434749	rs35893643	G	GT	23573.73	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr14	103440282	rs1018550	G	T	12579.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr14	103440473	rs8009219	G	C	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:168,237:0.59:405
chr14	103449863	rs59675332	CA	C	496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.408;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:241,97:0.29:338
chr14	103523598	rs34302315	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	103523612	rs34174242	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	103566904	rs1057640	G	A	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:116,158:0.58:274
chr14	103568729	rs10142200	A	G	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	103570134	.	C	CGTGTGTGTGT	368	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=4;MGOF=24;MMLQ=21;MQ=58.91;NF=3;NR=10;PP=368;QD=28.5384615385;SC=GGCGCGCGCGCGTGTGTGTGT;SbPval=0.76;Source=Platypus;TC=31;TCF=9;TCR=22;TR=13;WE=103570145;WS=103570120;set=Platypus	GT:AD:AF:DP	0/1:18,13:0.42:31
chr14	103570136	.	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=6.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.356;SOR=2.249;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr14	103574714	rs10144543	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr14	103576395	rs729185	G	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,121:0.47:258
chr14	103576415	rs729184	A	G	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	103576443	rs729183	TC	CG	11047.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr14	103576803	rs11355422	CG	C	2098.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	103593628	.	G	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.82;ReadPosRankSum=0.712;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	103593950	rs1132339	C	G	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:239,259:0.52:498
chr14	103595997	rs2234130	G	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr14	103596488	rs2234131	G	A	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:121,117:0.49:238
chr14	103596609	rs2234133	T	A	5144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.653;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:287,272:0.49:559
chr14	103597565	rs749206	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	103599005	rs8176366	TGTGTCTGC	T	3337.73	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:226,176:0.44:402
chr14	103599938	rs2234143	C	T	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr14	103602278	rs710100	A	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr14	103802918	rs11326883	CA	C	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=2.319;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:63,51:0.45:114
chr14	103804107	rs180723198	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr14	103804417	rs2274191	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr14	103852607	rs12436956	G	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr14	103852725	rs3825566	C	T	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:202,137:0.40:339
chr14	103894620	rs199659735	G	GTTGC	1167.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr14	103918182	rs2273702	G	C	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:102,69:0.40:171
chr14	103923475	rs2273699	A	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=1.379;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	103928657	rs4906326	T	A	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	103928819	rs10145934	C	T	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:94,109:0.54:203
chr14	103931879	rs1116095	A	G	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:79,69:0.47:148
chr14	103932888	rs1951393	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	103933341	rs11320440	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.776;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr14	103933348	rs201971883	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.171;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr14	103933556	rs8010247	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr14	103934488	rs10137161	T	C	8119.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.863;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.082;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.910;SOR=0.411;set=HC	GT:AD:AF:DP	1/1:3,319:0.99:322
chr14	103946636	rs8014010	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	103964807	rs202211193	A	AT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.139;QD=2.51;ReadPosRankSum=-1.837;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr14	103986255	rs1803283	C	T	3847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.080;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:170,186:0.52:356
chr14	103987078	rs2071408	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr14	103987482	rs137901801	C	CCCT	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr14	103988180	rs1136165	G	T	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	103988291	rs10129401	G	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr14	103995489	rs2765038	C	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	103996396	rs2765037	G	A	8433.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	103996733	rs2756138	C	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	104000802	rs11350625	AG	A	661.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr14	104001377	rs56666624	C	T	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:165,156:0.49:321
chr14	104001604	rs111867935	T	G	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:210,129:0.38:339
chr14	104027557	rs11625397	C	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr14	104028270	rs7148456	T	C	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:193,141:0.42:334
chr14	104028303	rs73361323	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:162,139:0.46:301
chr14	104029346	rs61733762	T	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-1.480;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr14	104029792	rs2296483	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr14	104029832	rs73361328	C	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr14	104040632	rs73361345	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr14	104135966	rs12896171	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr14	104136469	rs11333716	CT	C	1917.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr14	104136633	rs12590968	G	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr14	104139570	rs11160757	G	T	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr14	104143928	rs4906357	A	C	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,82:0.43:190
chr14	104145625	.	GT	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.164;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr14	104151400	rs35011804	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chr14	104151427	rs73363059	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr14	104165927	rs1799796	T	C	3825.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:213,205:0.49:418
chr14	104166015	rs3212109	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr14	104167075	rs861537	C	T	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.406;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:70,65:0.48:135
chr14	104167545	rs709399	G	A	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.272;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:170,115:0.40:285
chr14	104172744	rs141823016	A	G	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:243,239:0.50:482
chr14	104177190	rs139961690	A	AAC	1193.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr14	104178186	rs3212038	A	G	142.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr14	104182109	.	G	GGCGGGCGGT	440.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr14	104193099	rs2295151	C	G	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:166,143:0.46:309
chr14	104194196	rs1535100	C	G	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr14	104194278	rs1535099	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr14	104195610	rs2295148	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr14	104199356	rs2295146	C	T	3762.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:241,196:0.45:437
chr14	104201549	rs3825550	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.075;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr14	104206222	rs35098798	C	T	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:144,145:0.50:289
chr14	104212992	rs146044005	G	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	104216293	rs2295140	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:85,95:0.53:180
chr14	104219578	.	C	CT	35	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=11;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=35;QD=11.0;SC=TTAGTTGATCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=4;WE=104219586;WS=104219568;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	104261002	.	TA	T	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.967;QD=0.94;ReadPosRankSum=1.461;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:223,63:0.22:286
chr14	104380925	rs112997158	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr14	104381502	rs1053419	T	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:150,151:0.50:301
chr14	104394835	rs9324065	T	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	104394850	rs9324066	C	T	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=1.759;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:110,64:0.37:174
chr14	104429302	rs140667603	A	AGTGT	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	104429453	rs6576013	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:76,101:0.57:177
chr14	104436931	rs11851097	C	T	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-1.035;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:107,84:0.44:191
chr14	104441925	rs10147923	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr14	104452405	rs10143030	C	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr14	104452640	rs10143389	G	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,89:0.52:170
chr14	104465037	rs10133836	T	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:83,58:0.41:141
chr14	104470686	rs28391043	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr14	104470698	rs151098927	GTTTATTTATTTA	G	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	104471857	rs12147828	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr14	104475034	rs4906401	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.13;ReadPosRankSum=0.385;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr14	104481016	rs7150795	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr14	104481083	rs11160779	T	C	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:178,137:0.43:315
chr14	104481200	rs59025288	A	AT	2585.73	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:210,160:0.43:370
chr14	104491086	rs72042212	TACACACACACAC	T	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=14.472;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.618;QD=21.11;ReadPosRankSum=1.313;SOR=2.422;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr14	104497543	rs10135507	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:136,155:0.53:291
chr14	104498472	rs4906405	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.557;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr14	104498530	.	ATCTTT	A	47	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=124;MMLQ=27;MQ=57.45;NF=0;NR=1;PP=47;QD=58.0;SC=GGAATGTGTTATCTTTTCTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=1;WE=104498542;WS=104498520;set=Platypus	GT:AD:AF:DP	0/1:4,1:0.20:5
chr14	104500427	rs10150865	A	G	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.375;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:156,132:0.46:288
chr14	104500530	rs10151066	C	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-2.496;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr14	104552382	rs1770988	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	104559506	rs1744282	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.961;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr14	104559552	rs941951	G	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr14	104559623	rs941952	T	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:103,76:0.42:179
chr14	104559852	rs941953	T	C	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:196,151:0.44:347
chr14	104559919	rs1770984	T	C	4919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.448;QD=14.69;ReadPosRankSum=1.146;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:200,135:0.40:335
chr14	104559922	rs1744284	C	G	4873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.455;QD=15.18;ReadPosRankSum=1.225;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:192,129:0.40:321
chr14	104559959	.	CTGGGTGGGGCTGTGGTGTGTGGGTGGGGCTGAGGTGTG	C	1521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=10.304;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.018;QD=10.87;ReadPosRankSum=1.481;SOR=1.531;set=HC	GT:AD:AF:DP	0/1:96,44:0.31:140
chr14	104561998	rs1770983	T	C	5048.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:245,252:0.51:497
chr14	104570904	rs1744299	T	C	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,106:0.47:224
chr14	104571826	rs1744300	A	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr14	104573690	rs1744301	A	G	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr14	104575466	rs1771012	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr14	104575531	rs1744302	C	G	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr14	104638926	rs2275595	G	A	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:212,208:0.50:420
chr14	104638981	.	T	G	3566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.845;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:201,185:0.48:386
chr14	104639035	rs1004880	T	C	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.477;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:179,125:0.41:304
chr14	104639233	rs10133027	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	104639655	rs57928850	C	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:132,124:0.48:256
chr14	104640481	rs2254205	G	C	4423.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:226,227:0.50:453
chr14	104641612	rs4906422	T	C	10513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=1180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.520;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:616,546:0.47:1162
chr14	104641792	rs2487305	C	T	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:172,155:0.47:327
chr14	104642341	rs2487304	A	G	17507.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr14	104642422	rs3742947	A	G	5326.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:279,271:0.49:550
chr14	104643201	.	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr14	104643409	rs2487303	A	G	10164.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr14	104643421	rs2487302	T	C	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:195,200:0.51:395
chr14	104643721	rs2487301	C	A	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chr14	104643859	rs2487300	A	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr14	104643916	.	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=10.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.516;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:67,47:0.41:114
chr14	104644099	rs2497297	T	C	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:168,166:0.50:334
chr14	104644147	rs11621644	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:120,134:0.53:254
chr14	104646211	rs57249314	C	CG	380.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr14	104647224	rs884996	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr14	104710505	rs7142555	T	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	104710651	rs7141507	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:117,101:0.46:218
chr14	104940930	rs28453989	C	T	11374.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:1,438:1.00:439
chr14	104979003	rs146997296	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr14	104979165	rs114862077	C	T	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr14	104979224	rs189979196	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:75,75:0.50:150
chr14	105054044	rs73361819	C	T	17003.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=0.913;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,656:1.00:657
chr14	105054260	rs9788527	A	G	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	105054680	rs142842253	G	GC	4319.73	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:212,175:0.45:387
chr14	105054934	rs12880814	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr14	105055118	rs111285011	TGACGGGCAG	T	1047.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:62,53:0.46:115
chr14	105055291	rs3840008	TG	T	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr14	105055304	rs11160811	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr14	105055359	rs3803318	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	105059760	rs145022257	CG	C	6714.73	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:224,202:0.47:426
chr14	105060024	rs12879330	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105070791	rs3803313	G	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr14	105147703	.	G	A	376.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr14	105150273	rs7153053	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	105167807	rs4983530	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	105173454	rs57402537	G	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr14	105174445	rs114087680	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr14	105175085	rs11850821	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,83:0.52:161
chr14	105177351	rs3840006	CA	C	18414.73	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr14	105177427	rs59751492	C	T	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:333,255:0.43:588
chr14	105178089	rs4983531	T	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.56;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	105178098	rs4983532	G	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.75;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	105178640	.	C	T	433.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr14	105179043	rs4497619	G	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	105179081	rs10144190	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:42,73:0.63:115
chr14	105179194	rs10133301	T	C	9436.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr14	105179344	rs73347508	C	T	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr14	105179707	rs73347510	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr14	105180484	rs9672043	C	T	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	105180565	rs4983535	T	C	10107.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr14	105180706	rs1128840	A	C	15602.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:2,592:1.00:594
chr14	105196365	rs33958252	T	C	9363.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr14	105201596	rs7149183	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr14	105207134	rs3803307	A	G	8634.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	105208037	rs4983539	A	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr14	105208057	rs4983384	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr14	105209667	rs4587901	A	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:108,100:0.48:208
chr14	105211221	rs12432802	C	T	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:134,128:0.49:262
chr14	105211426	rs7155192	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	105212788	rs76787928	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.870;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr14	105213120	rs78110568	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,56:0.66:85
chr14	105213343	rs6644	A	G	7677.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	105219467	rs3809453	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.044;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	105219944	rs58368728	G	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr14	105219976	rs12889167	T	C	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.485;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:50,65:0.57:115
chr14	105220210	rs7151424	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,53:0.39:137
chr14	105222037	rs1132975	C	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,98:0.48:205
chr14	105223194	rs34992074	C	CAT	3300.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	105223525	rs12590163	T	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105225642	rs33942953	CCA	C	3797.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:129,102:0.44:231
chr14	105233095	rs2498804	C	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr14	105238591	rs55839843	CCTGAG	C	1117.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr14	105238604	rs2498800	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr14	105239192	rs2494732	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr14	105239570	rs35314414	C	T	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:208,212:0.50:420
chr14	105242228	rs2498797	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:73,73:0.50:146
chr14	105242831	rs3001371	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr14	105242966	rs2494735	T	C	4421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.209;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:229,225:0.50:454
chr14	105246325	rs2494737	T	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr14	105246629	rs3730368	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr14	105246686	rs2494738	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr14	105258892	rs2494748	C	T	6935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.252;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:396,349:0.47:745
chr14	105258893	rs2494749	A	G	26021.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.10;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,763:1.00:763
chr14	105267579	rs12878684	A	G	9030.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr14	105268104	rs10141867	G	A	4008.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:167,195:0.54:362
chr14	105268228	rs4983387	G	A	9653.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr14	105342507	rs116561688	G	T	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr14	105344188	.	TCC	T	1170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=40.344;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.861;QD=4.82;ReadPosRankSum=1.995;SOR=3.369;set=HC	GT:AD:AF:DP	0/1:168,75:0.31:243
chr14	105344195	rs373530242	C	G	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:88,167:0.65:255
chr14	105349220	rs2028415	T	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr14	105349388	rs2028414	A	C	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:199,219:0.52:418
chr14	105349897	rs10145031	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr14	105350235	rs2582555	T	C	2391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.806;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=7.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.675;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:193,139:0.42:332
chr14	105350355	rs2841236	A	G	7361.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:447,385:0.46:832
chr14	105350799	rs9788593	C	T	6896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.270;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:378,352:0.48:730
chr14	105350868	rs9788594	C	T	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:172,173:0.50:345
chr14	105350976	.	C	CG	250	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=6;HapScore=2;MGOF=20;MMLQ=24;MQ=56.71;NF=1;NR=11;PP=250;QD=22.9166666667;SC=TCGTGGGGAACGGGGGGTGGA;SbPval=0.5;Source=Platypus;TC=35;TCF=2;TCR=33;TR=12;WE=105350984;WS=105350966;set=Platypus	GT:AD:AF:DP	1/0:23,12:0.34:35
chr14	105351637	rs2582549	A	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr14	105351673	rs894038	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:103,113:0.52:216
chr14	105352178	rs77707059	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr14	105352255	rs2251389	T	A	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:254,204:0.45:458
chr14	105354293	rs2582548	A	G	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:173,183:0.51:356
chr14	105356137	rs2919629	G	C	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:110,112:0.50:222
chr14	105356241	rs61996002	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	105359306	rs3742939	G	C	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:150,129:0.46:279
chr14	105359827	rs2247712	T	C	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:135,141:0.51:276
chr14	105360293	rs115471762	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr14	105360746	rs2841244	T	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr14	105363202	rs10147348	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr14	105393556	rs2841280	G	C	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr14	105393707	rs879448	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr14	105398787	rs2582533	G	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr14	105404384	rs1048257	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr14	105405599	rs3742935	G	C	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:137,130:0.49:267
chr14	105405663	.	T	C	3301.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:124,152:0.55:276
chr14	105405942	rs28454709	G	A	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:153,135:0.47:288
chr14	105406238	rs2819419	A	C	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:282,217:0.43:499
chr14	105406372	rs61421370	C	T	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:233,178:0.43:411
chr14	105407031	rs11623422	A	G	4687.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:218,234:0.52:452
chr14	105407208	rs11851053	T	C	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:117,178:0.60:295
chr14	105407798	rs4465542	T	C	3115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=2.296;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:193,164:0.46:357
chr14	105407931	rs151077903	C	T	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:196,242:0.55:438
chr14	105408182	rs9672139	T	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:172,132:0.43:304
chr14	105408315	rs28600075	T	C	5638.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:402,300:0.43:702
chr14	105408811	rs2819421	A	G	4672.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:401,256:0.39:657
chr14	105408955	rs2819422	A	G	6821.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:347,346:0.50:693
chr14	105410183	rs10438246	T	C	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:168,148:0.47:316
chr14	105410411	rs11160825	C	T	13331.77	.	AC=1;AF=0.500;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	0/1:415,624:0.60:1039
chr14	105410745	rs375945458	C	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-6.811;QD=0.74;ReadPosRankSum=1.206;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:612,101:0.14:713
chr14	105410775	rs2819424	A	G	5725.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:491,317:0.39:808
chr14	105410827	rs28380382	C	T	7701.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:405,382:0.49:787
chr14	105411700	rs4264326	A	G	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:228,203:0.47:431
chr14	105411781	rs10438247	G	A	6469.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;MQ=59.53;set=Intersection	GT:AD:AF:DP	0/1:309,313:0.50:622
chr14	105412541	rs12433837	CA	TG	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;JOINED;set=Intersection	GT:AD:AF:DP	0/1:188,107:0.36:295
chr14	105412554	rs12436986	T	G	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.413;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=6.536;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-13.933;QD=12.59;ReadPosRankSum=-2.358;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:151,72:0.32:223
chr14	105412561	rs3000771	C	T	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.509;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-13.125;QD=11.34;ReadPosRankSum=-2.413;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:138,66:0.32:204
chr14	105413057	.	GA	TG	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=9.396;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-11.740;QD=1.36;ReadPosRankSum=-1.116;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:297,30:0.09:327
chr14	105413142	rs200865013	TG	CA	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-3.589;QD=2.44;ReadPosRankSum=-2.954;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:285,42:0.13:327
chr14	105413204	rs2582514	G	T	7581.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:213,201:0.49:414
chr14	105413223	rs55797226	A	G	7795.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:242,215:0.47:457
chr14	105413325	rs138287800	C	T	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:327,249:0.43:576
chr14	105413790	rs11848564	G	A	7969.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:402,397:0.50:799
chr14	105414238	rs60754080	C	A	10122.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:297,272:0.48:569
chr14	105414252	rs60106058	C	T	9762.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:364,273:0.43:637
chr14	105414280	rs2819429	T	G	17540.77	.	AC=2;AF=1.00;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	1/1:37,730:0.95:767
chr14	105414629	rs72702027	G	A	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:173,141:0.45:314
chr14	105414790	rs2582513	A	G	6189.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:331,304:0.48:635
chr14	105414810	rs10145032	C	G	6465.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:319,308:0.49:627
chr14	105415229	rs10134675	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-20.638;QD=0.75;ReadPosRankSum=-2.181;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:492,46:0.09:538
chr14	105415242	rs200922560	C	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-21.593;QD=1.08;ReadPosRankSum=-0.234;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:525,52:0.09:577
chr14	105415250	rs201959909	G	C	11668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-8.114;QD=19.78;ReadPosRankSum=0.596;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:291,299:0.51:590
chr14	105415253	rs199542803	A	G	9123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=5.026;QD=15.11;ReadPosRankSum=-0.272;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:355,249:0.41:604
chr14	105415264	rs201041268	GA	AT	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-21.729;QD=1.00;ReadPosRankSum=3.671;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:577,58:0.09:635
chr14	105415352	rs12890949	G	C	25615.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,809:1.00:809
chr14	105415422	rs79003030	G	A	10030.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:448,503:0.53:951
chr14	105415469	rs11846918	T	C	7520.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:309,361:0.54:670
chr14	105415541	rs150617757	T	C	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:145,142:0.49:287
chr14	105415608	rs11850848	G	C	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:172,175:0.50:347
chr14	105415698	rs368976350	G	A	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:202,212:0.51:414
chr14	105415899	rs11850869	A	G	8717.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:461,435:0.49:896
chr14	105416010	rs2582511	T	C	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:208,179:0.46:387
chr14	105416220	rs2819435	T	A	16935.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr14	105417228	rs2248960	C	T	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:386,242:0.39:628
chr14	105417261	rs185395675	G	C	8760.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:171,392:0.70:563
chr14	105417282	rs2819430	C	T	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.909;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=9.222;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-10.868;QD=4.22;ReadPosRankSum=-4.916;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:397,107:0.21:504
chr14	105417303	rs144807734	C	A	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=19.396;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-14.600;QD=2.00;ReadPosRankSum=-4.490;SOR=2.573;set=HC	GT:AD:AF:DP	0/1:409,44:0.10:453
chr14	105417313	rs80275639	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.571;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=26.588;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-14.747;QD=0.11;ReadPosRankSum=-3.436;SOR=6.271;set=HC	GT:AD:AF:DP	0/1:426,24:0.05:450
chr14	105417894	rs2819440	C	G	9767.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr14	105418064	rs377198190	A	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=15.391;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-11.248;QD=1.62;ReadPosRankSum=-1.797;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:117,11:0.09:128
chr14	105418077	.	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.061;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=26.639;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-12.214;QD=2.34;ReadPosRankSum=-1.016;SOR=3.414;set=HC	GT:AD:AF:DP	0/1:133,18:0.12:151
chr14	105418080	.	C	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=19.234;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-12.333;QD=3.33;ReadPosRankSum=-0.679;SOR=2.810;set=HC	GT:AD:AF:DP	0/1:135,19:0.12:154
chr14	105418098	.	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DP=168;set=Intersection	GT:AD:AF:DP	0/1:131,35:0.21:166
chr14	105418119	rs201187390	G	C	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=8.304;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-14.156;QD=8.04;ReadPosRankSum=-0.433;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:159,53:0.25:212
chr14	105418127	rs200332960	C	T	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.329;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-14.846;QD=8.95;ReadPosRankSum=0.471;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:172,61:0.26:233
chr14	105418134	.	A	G	2225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-14.848;QD=9.51;ReadPosRankSum=0.431;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:168,66:0.28:234
chr14	105418136	rs201387577	C	T	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-14.989;QD=9.20;ReadPosRankSum=1.081;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:176,67:0.28:243
chr14	105418166	rs78116894	T	C	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-15.482;QD=11.26;ReadPosRankSum=1.899;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:205,93:0.31:298
chr14	105418170	rs200879546	G	C	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-15.220;QD=11.08;ReadPosRankSum=1.418;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:206,99:0.32:305
chr14	105418481	rs200172350	C	T	4015.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:154,127:0.45:281
chr14	105418502	rs201268922	G	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=10.035;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-3.430;QD=3.22;ReadPosRankSum=-1.418;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:167,50:0.23:217
chr14	105418504	rs151013711	G	T	3267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-6.729;QD=14.99;ReadPosRankSum=-2.380;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:126,92:0.42:218
chr14	105418638	rs78353106	A	G	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:214,204:0.49:418
chr14	105419557	rs78204285	G	A	4091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.274;QD=17.49;ReadPosRankSum=2.920;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:130,104:0.44:234
chr14	105419559	rs74525871	A	G	4336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.293;QD=18.15;ReadPosRankSum=2.390;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:131,108:0.45:239
chr14	105419568	rs78110724	A	G	4529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.347;QD=16.35;ReadPosRankSum=0.563;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:146,131:0.47:277
chr14	105420215	rs2278607	T	C	5928.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:289,282:0.49:571
chr14	105452035	rs10150682	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	105452227	.	GACT	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-2.054;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr14	105452232	.	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=5.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.714;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr14	105452291	rs1866828	T	C	56.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.21;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	105457771	rs2247140	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.022;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:49,33:0.40:82
chr14	105461067	rs894039	C	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:132,116:0.47:248
chr14	105477507	rs7144401	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,75:0.43:174
chr14	105477613	rs7145565	T	C	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:164,125:0.43:289
chr14	105517675	rs61737948	C	T	4735.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:267,230:0.46:497
chr14	105609335	rs10149229	A	G	12150.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr14	105611282	rs2272591	A	G	11572.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr14	105613039	rs113906438	C	T	5576.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:384,294:0.43:678
chr14	105613644	rs372993659	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr14	105614032	rs2242636	C	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	105614137	rs141925862	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:124,98:0.44:222
chr14	105615026	rs2242634	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	105616870	rs59700762	G	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr14	105617042	rs1057744	C	T	6120.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:346,318:0.48:664
chr14	105617512	rs113561600	A	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr14	105617532	.	AGCAGCCCCAGCAGCCCCC	A	2397.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr14	105617550	rs3830678	C	CGCAGCCCCA	2770.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr14	105618670	rs2238287	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	105622056	rs2816679	A	G	15790.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr14	105639278	rs115869881	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr14	105643619	rs10139596	G	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr14	105643652	rs10139450	A	C	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	105644151	rs1882848	T	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr14	105676048	rs3087836	G	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr14	105677058	rs10149753	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr14	105677729	rs10129420	A	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr14	105677798	rs10141757	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=9.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=1.038;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	105685319	rs75894747	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:54,76:0.58:130
chr14	105686570	rs8005486	T	C	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	105692697	rs12883636	G	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	105715237	.	C	G	193.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr14	105715793	rs377166086	G	A	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:146,158:0.52:304
chr14	105715881	rs181120393	G	A	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:183,160:0.47:343
chr14	105821439	rs142209904	G	A	7478.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:329,371:0.53:700
chr14	105842981	rs28444495	T	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr14	105843059	rs28461287	A	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:142,83:0.37:225
chr14	105843179	rs4074004	C	G	5927.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:567,337:0.37:904
chr14	105843279	rs116022285	G	A	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:315,218:0.41:533
chr14	105845888	rs28529001	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr14	105846503	rs11846567	T	C	4904.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:319,261:0.45:580
chr14	105848397	rs112632153	TG	T	520.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr14	105848891	rs4076933	T	C	6437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.454;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:426,344:0.45:770
chr14	105849557	rs111775845	C	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr14	105849672	rs78973899	G	A	6564.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:369,338:0.48:707
chr14	105849948	rs77820785	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr14	105860858	rs78899107	G	T	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:135,166:0.55:301
chr14	105886220	.	TCGG	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-2.304;QD=3.06;ReadPosRankSum=-0.762;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr14	105905126	rs4983620	C	T	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	105911639	rs6576102	G	A	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	105916420	rs4983409	C	T	16029.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:2,622:1.00:624
chr14	105924538	rs7492915	G	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	105924786	rs4074001	G	A	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:132,117:0.47:249
chr14	105929443	rs7143366	C	T	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:132,131:0.50:263
chr14	105929745	rs74092385	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr14	105930910	rs192790749	G	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:141,154:0.52:295
chr14	105930923	rs11845995	G	A	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:149,137:0.48:286
chr14	105931585	rs4983339	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105932636	rs34378689	C	CAG	2029.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr14	105933094	rs28725385	C	T	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:183,161:0.47:344
chr14	105935721	rs10150545	A	G	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	105935824	rs13707	G	A	11447.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr14	105936064	rs10150915	A	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105936100	rs144496498	A	ACCTTGGCTGGTGGCC	4867.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.91;SOR=2.354;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	105945891	rs11849001	C	T	10631.77	.	AC=1;AF=0.500;AN=2;DB;DP=1231;set=Intersection	GT:AD:AF:DP	0/1:667,543:0.45:1210
chr14	105953474	rs7160858	G	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr14	105953595	rs7140395	T	C	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.185;QD=11.63;ReadPosRankSum=-0.613;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:35,49:0.58:84
chr14	105954682	rs1128308	C	G	5525.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:446,312:0.41:758
chr14	105954739	rs7145303	A	G	5987.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:471,332:0.41:803
chr14	105960242	rs80086621	T	C	5522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=0.865;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:330,298:0.47:628
chr14	105960319	rs61641418	A	G	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr14	105962234	rs7494350	T	C	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	105962369	rs7494717	A	G	8017.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	105963944	rs4983426	CT	TC	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr14	105964186	rs140430062	C	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:168,125:0.43:293
chr14	105996049	rs10569304	TGCC	T	5998.73	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:183,162:0.47:345
chr14	106053409	rs11628783	C	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:146,122:0.46:268
chr14	106053559	rs201836307	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=11.044;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-1.461;QD=0.31;ReadPosRankSum=-3.949;SOR=1.623;set=HC	GT:AD:AF:DP	0/1:205,30:0.13:235
chr14	106053854	rs141822493	AG	GA	7702.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;JOINED;set=Intersection	GT:AD:AF:DP	0/1:167,196:0.54:363
chr14	106053866	rs150594940	G	A	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:185,221:0.54:406
chr14	106054748	rs74519992	G	A	3889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-10.733;QD=3.93;ReadPosRankSum=8.539;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:728,263:0.27:991
chr14	106054791	rs73357622	G	T	8842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-9.806;QD=14.26;ReadPosRankSum=5.740;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:373,247:0.40:620
chr14	106054796	rs74091253	A	G	8741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-9.006;QD=15.55;ReadPosRankSum=5.193;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:330,232:0.41:562
chr14	106054812	rs111444508	C	T	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:229,200:0.47:429
chr14	106054842	.	G	A	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=9.489;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-2.049;QD=3.92;ReadPosRankSum=0.114;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:182,61:0.25:243
chr14	106054854	.	A	T	2939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=9.827;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-4.918;QD=15.72;ReadPosRankSum=-1.506;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:103,84:0.45:187
chr14	106054858	.	T	C	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.014;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.478;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-4.942;QD=17.59;ReadPosRankSum=-2.121;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:85,70:0.45:155
chr14	106066454	rs4983454	T	C	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	106066809	rs58503622	A	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr14	106067618	rs12884681	G	A	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:103,123:0.54:226
chr14	106110330	rs8014709	T	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr14	106173553	rs13000	A	G	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:182,200:0.52:382
chr14	106173790	rs17349690	A	G	12099.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr14	106173971	rs10220590	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.06;QD=28.07;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	106174081	rs148399076	C	T	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:180,148:0.45:328
chr14	106174123	rs141644948	G	A	4249.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:236,221:0.48:457
chr14	106174405	rs1128917	T	C	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:135,105:0.44:240
chr14	106174518	rs12433324	A	G	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=33.55;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	106174518	.	ACTTCCCCA	GCTTCCCCA,GCTTCCCCG	366	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=27;MQ=59.78;NF=28,15;NR=32,13;PP=366,309;QD=6.67952020912;SC=GTCAGCACATACTTCCCCATG;SbPval=0.57;Source=Platypus;TC=60;TCF=28;TCR=32;TR=60,28;WE=106174534;WS=106174508;set=Platypus	GT:AF:DP	0/1:1.00:60
chr14	106174526	rs28643498	A	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.531;QD=9.76;ReadPosRankSum=0.319;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr14	106174796	rs144145908	C	T	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:89,125:0.58:214
chr14	106175037	rs58621233	C	CATGCCATG	9273.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.28;QD=45.02;SOR=4.493;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	106175040	rs59809572	C	CCCAGGAGGACAG	6757.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.94;QD=49.69;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	106175044	rs57258431	A	G	4291.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.01;QD=47.16;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	106175045	.	T	TG	4147.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.07;QD=45.58;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	106175046	.	A	C	4111.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.08;QD=52.71;SOR=4.147;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	106175091	rs114196295	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr14	106188045	rs11624491	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr14	106188230	rs1134590	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:162,60:0.27:222
chr14	106208107	rs11557940	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr14	106208158	rs140058534	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:87,90:0.51:177
chr14	106208775	rs11847783	G	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.949;QD=8.85;ReadPosRankSum=0.196;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:80,70:0.47:150
chr14	106209340	rs11552998	T	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.36;QD=24.76;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	106235485	rs112228168	T	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.48;MQRankSum=-2.207;QD=10.85;ReadPosRankSum=0.105;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr14	106235528	rs368273969	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-1.738;QD=4.39;ReadPosRankSum=3.785;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr14	106235535	rs371721170	C	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-2.634;QD=3.33;ReadPosRankSum=2.594;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr14	106235567	rs139488657	G	A	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-4.972;QD=9.56;ReadPosRankSum=1.403;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:97,39:0.29:136
chr14	106235569	rs4042058	C	G	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-4.919;QD=9.43;ReadPosRankSum=2.040;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr14	106235611	rs1051112	A	T	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-6.347;QD=12.23;ReadPosRankSum=0.649;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr14	106236143	rs74093865	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr14	106236429	rs201937350	TG	T	2306.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr14	106237105	rs2753552	A	G	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	106237642	rs2983777	T	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	106303325	rs3764172	A	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr14	106303699	rs10139433	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	106303846	rs1005582	C	T	8663.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr14	106303948	rs1005581	A	G	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	106304899	rs762807	G	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	106306841	rs709589	C	T	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:137,98:0.42:235
chr14	106307054	rs2753491	C	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	106307418	rs2753492	G	A	5467.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:306,281:0.48:587
chr14	106311030	rs12589570	GT	AC	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr14	106311374	rs2856940	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	106318248	rs1059713	A	T	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:175,172:0.50:347
chr14	106318440	rs2256589	T	C	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	106318450	rs2753504	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	106321590	rs12365	C	A	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	106321663	rs1059216	T	C	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:181,191:0.51:372
chr14	106329287	rs13379369	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=-1.330;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr14	106329435	rs1950943	T	G	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:103,119:0.54:222
chr14	106329449	.	ATG	A	4983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=1.910;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:125,129:0.51:254
chr14	106329451	.	GTA	ACC	2792	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=24;MQ=60.0;NF=30;NR=32;PP=2792;QD=20;SC=AGACGTCCATGTAGTAGTAGT;SbPval=0.33;Source=Platypus;TC=123;TCF=67;TCR=56;TR=62;WE=106329461;WS=106329441;set=Platypus	GT:AD:AF:DP	1/0:61,62:0.50:123
chr14	106329453	.	A	ACC	4669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=2.677;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:127,120:0.49:247
chr14	106329919	rs3752943	G	A	11120.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr14	106330117	rs3752944	G	A	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.67;ReadPosRankSum=0.098;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr14	106330126	rs3752945	C	A	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.00;ReadPosRankSum=0.522;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr14	106330178	rs61126474	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr14	106330197	rs60847425	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr14	106330320	rs2857385	A	C	20326.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:0,773:1.00:773
chr14	106330355	rs74678017	C	G	8663.77	.	AC=1;AF=0.500;AN=2;DB;DP=971;set=Intersection	GT:AD:AF:DP	0/1:511,448:0.47:959
chr14	106330370	rs2857384	G	A	24591.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	1/1:0,936:1.00:936
chr14	106330880	rs2236228	C	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:75,117:0.61:192
chr14	106331722	rs111768390	C	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,119:0.57:210
chr14	106346740	rs2244932	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	106346795	rs2244930	G	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,57:0.38:150
chr14	106346990	rs2244917	G	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr14	106347371	rs112800624	T	A	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:272,279:0.51:551
chr14	106347420	rs72481504	T	C	8732.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:415,435:0.51:850
chr14	106347467	rs2516984	A	C	21544.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:1,811:1.00:812
chr14	106349827	rs188955129	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr14	106350569	rs2516978	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,58:0.52:112
chr14	106350623	rs2753523	G	C	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:160,150:0.48:310
chr14	106350696	rs2857368	A	G	5297.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:272,271:0.50:543
chr14	106354353	rs2516972	C	T	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr14	106354418	rs12894229	G	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:110,171:0.61:281
chr14	106354450	rs113647906	A	G	4458.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:228,213:0.48:441
chr14	106354474	rs199550558	TACAGGAG	T	9023.73	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:309,233:0.43:542
chr14	106354495	rs200584328	A	AG	9932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.267;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-15.408;QD=16.31;ReadPosRankSum=0.422;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:349,260:0.43:609
chr14	106354498	rs202197703	CT	C	10254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-15.224;QD=16.51;ReadPosRankSum=-0.397;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:353,268:0.43:621
chr14	106354503	rs111599611	C	T	10284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.389;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-15.047;QD=16.04;ReadPosRankSum=-0.566;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:366,275:0.43:641
chr14	106354531	rs112554218	T	C	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:361,311:0.46:672
chr14	106354666	rs188457056	C	T	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.853;QD=17.59;ReadPosRankSum=0.116;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:54,49:0.48:103
chr14	106354668	rs190753651	T	C	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.720;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-2.954;QD=18.49;ReadPosRankSum=0.735;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:53,45:0.46:98
chr14	106356790	.	T	C	30	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=17;MQ=60.0;NF=3;NR=1;PP=30;QD=16.1928031368;SC=ATCCCTGTCTTTCTGAGGACA;SbPval=0.63;Source=Platypus;TC=9;TCF=7;TCR=2;TR=4;WE=106356798;WS=106356788;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr14	106356974	rs2753529	G	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:170,127:0.43:297
chr14	106357470	rs113407144	C	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:122,132:0.52:254
chr14	106357749	rs2254707	C	T	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	106359259	rs2857366	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	106360453	rs112929337	A	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	106361418	rs2753533	T	C	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	106361561	rs61993631	GC	AT	9350.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=44.53;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	106361564	rs61993633	A	T	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=45.98;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	106364036	rs143343172	T	G	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:132,128:0.49:260
chr14	106366544	rs112989444	G	A	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	106368342	rs56167293	C	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	106369534	rs2516960	A	G	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr14	106370603	rs2857350	G	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.97;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	106375638	rs2857347	T	C	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	106375649	rs12433707	A	G	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	106376144	rs2516956	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	106376354	rs2516955	A	G	15010.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr14	106376385	rs3794477	G	A	10934.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr14	106378962	rs11160893	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:113,110:0.49:223
chr14	106379020	rs113166883	G	A	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:244,184:0.43:428
chr14	106380073	rs2856850	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	106380171	rs3794478	C	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.116;QD=8.19;ReadPosRankSum=0.095;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:63,49:0.44:112
chr14	106380174	rs2157630	C	A	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=33.75;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	106382687	rs2857339	C	T	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:126,128:0.50:254
chr14	106385211	.	AGTGGGGTTC	A	413.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-2.980;QD=14.78;ReadPosRankSum=-0.987;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	106385221	.	AG	A	414.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-2.785;QD=13.38;ReadPosRankSum=-1.574;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr14	106385233	rs2857334	AC	GT	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.45;QD=45.53;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	106385245	rs2857332	C	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.50;QD=41.46;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	106385332	rs2250700	G	C	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	106386996	rs59137576	T	C	5443.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:307,281:0.48:588
chr14	106387171	rs56082637	T	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,67:0.44:154
chr14	106388588	rs2516944	A	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	106436780	rs67875134	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:127,107:0.46:234
chr14	106437080	rs72715495	C	T	2967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-1.099;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:192,157:0.45:349
chr14	106452628	rs7144717	T	G	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:108,133:0.55:241
chr14	106452766	rs112806369	T	A	9630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.408;QD=8.69;ReadPosRankSum=1.756;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:615,493:0.44:1108
chr14	106471268	rs1143505	A	G	11517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-7.858;QD=18.43;ReadPosRankSum=1.157;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:328,297:0.48:625
chr14	106471273	rs77346190	C	T	11671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-7.793;QD=17.93;ReadPosRankSum=0.735;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:340,311:0.48:651
chr14	106471353	rs34069216	C	T	11271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=1222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-9.400;QD=9.28;ReadPosRankSum=-0.227;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:642,572:0.47:1214
chr14	106471388	rs34874585	C	A	13876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=1269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-7.501;QD=11.07;ReadPosRankSum=-0.095;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:628,625:0.50:1253
chr14	106471437	rs114502996	G	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.813;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-22.969;QD=0.22;ReadPosRankSum=2.739;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:1025,83:0.07:1108
chr14	106471509	rs113475512	C	A	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-9.090;QD=1.78;ReadPosRankSum=-0.722;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:521,67:0.11:588
chr14	106471515	rs200143794	C	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-9.672;QD=1.78;ReadPosRankSum=-1.884;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:503,59:0.10:562
chr14	106471522	rs111605692	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-10.111;QD=1.28;ReadPosRankSum=-3.333;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:498,54:0.10:552
chr14	106471528	rs35966079	C	A	6027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-8.467;QD=11.31;ReadPosRankSum=1.320;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:360,173:0.32:533
chr14	106471534	rs36065697	A	G	6089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.210;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=6.492;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-12.504;QD=12.96;ReadPosRankSum=0.232;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:304,166:0.35:470
chr14	106471547	rs1143496	A	G	6819.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:297,179:0.38:476
chr14	106471580	rs56320742	GC	TT	4202.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;JOINED;set=Intersection	GT:AD:AF:DP	0/1:239,117:0.33:356
chr14	106471595	rs34652473	T	C	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:188,100:0.35:288
chr14	106471689	rs56372013	A	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:150,105:0.41:255
chr14	106478137	rs147818197	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.948;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-3.226;QD=3.39;ReadPosRankSum=1.039;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:97,34:0.26:131
chr14	106478401	rs78225485	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=6.209;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-1.897;QD=3.26;ReadPosRankSum=0.277;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:103,35:0.25:138
chr14	106494251	rs141264800	T	C	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:165,162:0.50:327
chr14	106494269	rs12895651	T	C	11609.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	106518418	rs113047412	A	G	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:309,219:0.41:528
chr14	106518686	rs180765266	T	C	9650.77	.	AC=1;AF=0.500;AN=2;DB;DP=1039;set=Intersection	GT:AD:AF:DP	0/1:528,495:0.48:1023
chr14	106518848	rs2073679	T	C	7515.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:455,388:0.46:843
chr14	106539280	rs59165019	A	G	11571.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr14	106539394	rs59824431	A	G	7754.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	106539581	.	G	GT	2958.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	106539582	rs59674169	G	GAT	2959.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=2.483;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	106539585	rs58691570	A	T	2806.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.78;SOR=2.381;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	106539586	.	C	CT	2707.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.89;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	106539587	.	C	CAGTA,CTCTCAGTA	2662.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=59;set=Intersection	GT:AF:DP	1/1:1.00:58
chr14	106552310	rs8020204	G	A	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.95;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	106578952	rs11160922	A	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	106579045	rs17112496	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:168,107:0.39:275
chr14	106586231	rs10151633	C	T	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:169,195:0.54:364
chr14	106586259	rs11625174	T	G	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:250,227:0.48:477
chr14	106586354	rs10131161	G	C	5474.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:246,264:0.52:510
chr14	106641761	rs72695948	A	G	8565.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:496,438:0.47:934
chr14	106667592	rs3751514	G	A	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:233,252:0.52:485
chr14	106667810	rs112170273	C	A	12187.77	.	AC=1;AF=0.500;AN=2;DB;DP=1184;set=Intersection	GT:AD:AF:DP	0/1:572,591:0.51:1163
chr14	106667891	rs201914172	AAC	A	9332.73	.	AC=1;AF=0.500;AN=2;DB;DP=1063;set=Intersection	GT:AD:AF:DP	0/1:552,465:0.46:1017
chr14	106667902	rs58794564	A	AC	30964.73	.	AC=2;AF=1.00;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	1/1:2,988:1.00:990
chr14	106691657	rs34019594	T	C	2746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=11.698;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-2.696;QD=12.78;ReadPosRankSum=1.210;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:97,118:0.55:215
chr14	106691688	rs201063032	C	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=-6.311;QD=0.84;ReadPosRankSum=-3.038;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:351,58:0.14:409
chr14	106691778	rs4470054	T	A	6609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=1246;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-27.900;QD=5.30;ReadPosRankSum=8.341;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:1004,242:0.19:1246
chr14	106691796	.	GTAA	G	3439.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DP=1310;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-29.363;QD=2.63;ReadPosRankSum=5.318;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:1147,163:0.12:1310
chr14	106691800	.	C	G	3229.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DP=1297;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-29.913;QD=2.49;ReadPosRankSum=5.535;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1137,160:0.12:1297
chr14	106692143	rs73377566	A	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:203,94:0.32:297
chr14	106725523	rs146848049	C	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=1258;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-5.309;QD=0.10;ReadPosRankSum=-0.839;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:1169,83:0.07:1252
chr14	106725538	rs71416657	G	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=1222;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-5.850;QD=0.45;ReadPosRankSum=1.476;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:1121,95:0.08:1216
chr14	106725545	rs184685096	GT	AA	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=2.166;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-6.777;QD=0.83;ReadPosRankSum=2.567;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:1110,101:0.08:1211
chr14	106725558	.	C	A	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DP=1220;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-9.704;QD=1.12;ReadPosRankSum=3.977;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:1104,112:0.09:1216
chr14	106725574	rs12433829	T	C	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=1228;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-18.465;QD=1.45;ReadPosRankSum=3.543;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:1094,131:0.11:1225
chr14	106733216	rs201747581	T	C	4697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;ClippingRankSum=0.000;DB;DP=1140;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-13.674;QD=4.18;ReadPosRankSum=8.269;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:942,183:0.16:1125
chr14	106733223	rs200123370	T	G	4472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=1177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-14.177;QD=3.84;ReadPosRankSum=9.151;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:985,179:0.15:1164
chr14	106733228	rs201071498	C	T	4390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=1197;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-14.376;QD=3.71;ReadPosRankSum=8.947;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1007,178:0.15:1185
chr14	106733254	rs200146986	G	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=1245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-15.655;QD=0.44;ReadPosRankSum=0.371;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:1075,161:0.13:1236
chr14	106733261	.	G	T	2968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=1224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-16.171;QD=2.44;ReadPosRankSum=-1.546;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1067,150:0.12:1217
chr14	106733380	rs200914519	CC	TT	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.072;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-12.989;QD=0.17;ReadPosRankSum=1.160;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:482,38:0.07:520
chr14	106733389	rs200188513	AG	TA	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-11.409;QD=0.74;ReadPosRankSum=0.665;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:415,39:0.09:454
chr14	106733437	rs112335453	G	C	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-6.533;QD=3.46;ReadPosRankSum=-0.018;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:245,47:0.16:292
chr14	106733458	rs116600694	G	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.813;QD=3.56;ReadPosRankSum=1.953;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:218,38:0.15:256
chr14	106733461	rs78432605	C	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.856;QD=3.47;ReadPosRankSum=2.108;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:216,37:0.15:253
chr14	106733463	rs116472681	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.791;QD=3.48;ReadPosRankSum=1.606;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:216,38:0.15:254
chr14	106733520	rs2338199	C	A	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:102,158:0.61:260
chr14	106733532	rs116710349	G	A	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-4.416;QD=4.32;ReadPosRankSum=-0.453;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:232,48:0.17:280
chr14	106733555	rs8013154	A	G	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.248;QD=4.10;ReadPosRankSum=0.994;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:241,49:0.17:290
chr14	106733593	rs4511432	G	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-6.163;QD=1.57;ReadPosRankSum=0.686;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:189,41:0.18:230
chr14	106733638	rs8013719	G	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.785;QD=3.21;ReadPosRankSum=0.705;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:106,33:0.24:139
chr14	106733653	rs114563889	A	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.488;QD=3.51;ReadPosRankSum=-0.244;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr14	106733679	rs116541104	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-3.843;QD=3.04;ReadPosRankSum=0.878;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr14	106733682	rs114939362	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-4.050;QD=2.75;ReadPosRankSum=1.469;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr14	106757692	rs12586895	G	A	2949.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:138,148:0.52:286
chr14	106757979	rs4774088	A	G	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:149,149:0.50:298
chr14	106758084	rs2073678	T	C	4461.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:255,235:0.48:490
chr14	106758131	rs4774089	A	G	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:157,150:0.49:307
chr14	106780542	rs113785338	C	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr14	106780632	rs112792995	A	T	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:194,187:0.49:381
chr14	106780705	rs201585788	CC	GT	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-16.003;QD=0.74;ReadPosRankSum=-0.831;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:516,48:0.09:564
chr14	106780710	rs200579255	T	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-16.073;QD=0.77;ReadPosRankSum=0.763;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:508,48:0.09:556
chr14	106780713	rs201371944	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-16.265;QD=0.84;ReadPosRankSum=1.620;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:501,48:0.09:549
chr14	106780727	rs200148408	TA	CC	7482.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;JOINED;set=Intersection	GT:AD:AF:DP	0/1:267,200:0.43:467
chr14	106780740	rs201820567	C	T	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:245,178:0.42:423
chr14	106780759	rs61994196	G	C	5626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-6.457;QD=19.27;ReadPosRankSum=0.411;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:140,152:0.52:292
chr14	106780759	.	GT	CC	2586	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=45;MMLQ=24;MQ=53.87;NF=31;NR=51;PP=2586;QD=20;SC=GGGACAGGGTGTCCGAAGGCT;SbPval=0.62;Source=Platypus;TC=185;TCF=73;TCR=112;TR=82;WE=106780768;WS=106780749;set=Platypus	GT:AD:AF:DP	1/0:103,82:0.44:185
chr14	106780760	rs181692209	T	C	2770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-1.393;QD=8.85;ReadPosRankSum=-1.355;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:175,138:0.44:313
chr14	106780801	rs56407212	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr14	106780803	rs200533358	C	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=-4.095;QD=1.07;ReadPosRankSum=-0.360;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:145,20:0.12:165
chr14	106780817	rs8009554	A	C	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	106791006	rs10148365	C	T	17771.77	.	AC=1;AF=0.500;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	0/1:225,630:0.74:855
chr14	106791022	rs375076007	C	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-5.152;QD=0.83;ReadPosRankSum=1.926;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:855,157:0.16:1012
chr14	106791119	rs4502119	A	G	15464.77	.	AC=1;AF=0.500;AN=2;DB;DP=1374;set=Intersection	GT:AD:AF:DP	0/1:922,450:0.33:1372
chr14	106791131	rs10148460	A	G	15689.77	.	AC=1;AF=0.500;AN=2;DB;DP=1351;set=Intersection	GT:AD:AF:DP	0/1:900,448:0.33:1348
chr14	106791200	rs8017285	GC	AG	13834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=1257;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-2.448;QD=11.02;ReadPosRankSum=-1.638;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:860,395:0.31:1255
chr14	106805236	rs61740539	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr14	106805278	rs61739320	A	G	3713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-3.693;QD=21.97;ReadPosRankSum=-0.475;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:77,92:0.54:169
chr14	106805282	rs199855112	G	C	3938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-4.227;QD=21.18;ReadPosRankSum=-0.927;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:83,103:0.55:186
chr14	106805326	rs151106805	G	A	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:234,190:0.45:424
chr14	106805341	rs200481782	G	A	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-11.208;QD=3.00;ReadPosRankSum=-1.508;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:449,70:0.13:519
chr14	106805343	rs200864088	A	G	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-11.177;QD=2.92;ReadPosRankSum=-1.266;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:460,72:0.14:532
chr14	106805380	rs201158628	G	T	1662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-6.435;QD=2.42;ReadPosRankSum=4.675;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:602,84:0.12:686
chr14	106805381	rs77489245	T	G	8998.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:316,370:0.54:686
chr14	106805386	rs199616126	G	C	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-6.220;QD=2.49;ReadPosRankSum=4.963;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:597,83:0.12:680
chr14	106805402	rs117757529	T	G	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-5.949;QD=2.65;ReadPosRankSum=1.750;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:580,90:0.13:670
chr14	106805408	rs61995642	C	T	4802.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:392,263:0.40:655
chr14	106805440	rs6576153	A	G	20909.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr14	106805508	rs4462488	G	A	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	106815752	rs200423519	G	A	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=13.005;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-11.385;QD=1.02;ReadPosRankSum=-7.134;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:267,45:0.14:312
chr14	106815944	rs375401993	C	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-9.001;QD=2.22;ReadPosRankSum=-4.721;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:335,86:0.20:421
chr14	106845193	rs10129987	C	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.81;QD=33.51;SOR=6.358;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	106845209	rs10129994	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.42;QD=32.71;SOR=6.736;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	106845308	rs112027281	A	T	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:243,206:0.46:449
chr14	106845417	rs112759551	C	T	9783.77	.	AC=1;AF=0.500;AN=2;DB;DP=1072;set=Intersection	GT:AD:AF:DP	0/1:558,496:0.47:1054
chr14	106858751	rs4622412	C	A	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	106859070	rs74093595	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	106859191	rs61997354	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.96;QD=28.07;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	106859351	rs1008525	G	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.18;QD=25.98;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	106866272	rs377225673	AT	A	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:36,7:0.16:43
chr14	106866393	rs202173243	T	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.152;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=31.013;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-14.833;QD=0.86;ReadPosRankSum=-5.968;SOR=3.941;set=HC	GT:AD:AF:DP	0/1:263,22:0.08:285
chr14	106866399	.	T	TCA	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.796;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=38.885;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-16.039;QD=2.38;ReadPosRankSum=-6.347;SOR=3.779;set=HC	GT:AD:AF:DP	0/1:287,32:0.10:319
chr14	106866406	rs201971870	A	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.733;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=76.160;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-13.994;QD=3.70;ReadPosRankSum=-6.301;SOR=4.839;set=HC	GT:AD:AF:DP	0/1:319,51:0.14:370
chr14	106866408	rs200425737	A	T	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.354;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=86.314;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-13.383;QD=3.75;ReadPosRankSum=-6.472;SOR=5.059;set=HC	GT:AD:AF:DP	0/1:327,57:0.15:384
chr14	106866411	rs376192125	TGG	T	1487.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.069;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=88.901;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-13.320;QD=3.77;ReadPosRankSum=-5.975;SOR=5.138;set=HC	GT:AD:AF:DP	0/1:336,59:0.15:395
chr14	106866414	rs202185056	C	T	1502.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.679;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=44.532;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-13.117;QD=3.71;ReadPosRankSum=-6.112;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:343,62:0.15:405
chr14	106866427	rs75206251	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.252;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-11.855;QD=0.56;ReadPosRankSum=-4.738;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:478,69:0.13:547
chr14	106866434	rs79672195	C	T	4821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.118;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-10.773;QD=7.55;ReadPosRankSum=-8.375;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:439,200:0.31:639
chr14	106866449	rs78850219	T	C	6395.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:527,278:0.35:805
chr14	106866465	rs78660098	A	G	8993.77	.	AC=1;AF=0.500;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	0/1:630,402:0.39:1032
chr14	106866565	rs58308167	C	A	40599.77	.	AC=1;AF=0.500;AN=2;DB;DP=2468;set=Intersection	GT:AD:AF:DP	0/1:1296,1156:0.47:2452
chr14	106866588	rs73379082	T	C	37847.77	.	AC=1;AF=0.500;AN=2;DB;DP=2255;set=Intersection	GT:AD:AF:DP	0/1:1211,1029:0.46:2240
chr14	106866654	rs111799426	T	C	15029.77	.	AC=1;AF=0.500;AN=2;DB;DP=1781;set=Intersection	GT:AD:AF:DP	0/1:981,741:0.43:1722
chr14	106866668	rs112298109	C	A	26821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=1786;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-9.494;QD=15.41;ReadPosRankSum=1.543;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:1013,728:0.42:1741
chr14	106866675	rs76077658	C	G	24854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=0.000;DB;DP=1832;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-9.521;QD=13.89;ReadPosRankSum=1.320;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:1045,744:0.42:1789
chr14	106866748	rs73379084	A	T	20059.77	.	AC=1;AF=0.500;AN=2;DB;DP=2377;set=Intersection	GT:AD:AF:DP	0/1:1286,1046:0.45:2332
chr14	106866810	rs73379088	C	T	25110.77	.	AC=1;AF=0.500;AN=2;DB;DP=1701;set=Intersection	GT:AD:AF:DP	0/1:926,720:0.44:1646
chr14	106866822	rs113233536	C	G	23314.77	.	AC=1;AF=0.500;AN=2;DB;DP=1469;set=Intersection	GT:AD:AF:DP	0/1:804,612:0.43:1416
chr14	106866865	rs201138265	G	C	10440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-5.520;QD=14.03;ReadPosRankSum=-1.259;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:454,290:0.39:744
chr14	106866869	rs201249856	G	A	10318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-5.530;QD=14.66;ReadPosRankSum=-2.100;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:430,274:0.39:704
chr14	106866891	rs200498236	G	T	6296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-4.801;QD=13.43;ReadPosRankSum=-3.909;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:306,163:0.35:469
chr14	106866891	.	GGG	TGA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=43;MMLQ=27;MQ=58.75;NF=24;NR=90;PP=2944;QD=20;SC=GATCACTGAAGGGAAACACCT;SbPval=0.86;Source=Platypus;TC=338;TCF=93;TCR=245;TR=114;WE=106866901;WS=106866881;set=Platypus	GT:AD:AF:DP	0/1:224,114:0.34:338
chr14	106866893	rs201066866	G	A	5894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-4.751;QD=13.07;ReadPosRankSum=-4.795;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:292,159:0.35:451
chr14	106877300	rs17112731	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr14	106877390	rs11847522	C	G	18503.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr14	106877445	rs60581578	C	T	27600.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:2,614:1.00:616
chr14	106877447	rs57593057	A	ATGATCT	28267.73	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:2,614:1.00:616
chr14	106877519	rs11847538	A	G	16681.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr14	106877535	rs73367258	C	G	6136.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:234,183:0.44:417
chr14	106877551	rs8020298	A	C	5557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.824;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=4.318;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=0.023;QD=16.30;ReadPosRankSum=0.143;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:198,143:0.42:341
chr14	106877553	rs376141717	C	G	5374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.632;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.267;QD=16.59;ReadPosRankSum=-0.207;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:188,136:0.42:324
chr14	106877555	rs369946732	C	T	5113.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.681;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=0.448;QD=16.29;ReadPosRankSum=-0.174;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:184,130:0.41:314
chr14	106877556	rs11847600	C	G	3975.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:132,180:0.58:312
chr14	106877583	rs34443934	T	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:115,64:0.36:179
chr14	106877618	rs11847658	G	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,82:0.72:114
chr14	106877637	rs11847603	A	G	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.36;QD=37.43;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	106877637	.	AGCCGTGTCT	GGCCGTGTCC,GGCCGTGTCT	1153	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=2;MMLQ=24;NF=28,65;NR=17,36;SC=AGTAATACACAGCCGTGTCTG;SbPval=0.45;Source=Platypus;TC=101;TCF=65;TCR=36;TR=45,101;WE=106877654;WS=106877627;set=Platypus	GT:AF:DP	0/1:0.45:101
chr14	106877646	rs11851921	T	C	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.389;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=8.206;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=1.408;QD=13.36;ReadPosRankSum=-1.108;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:47,66:0.58:113
chr14	106877700	rs11847691	G	T	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	106877753	rs35281264	A	G	8597.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:315,410:0.57:725
chr14	106877796	rs34195693	G	C	16081.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:388,443:0.53:831
chr14	106877818	rs367947132	CTA	C	15548.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-15.469;QD=20.41;ReadPosRankSum=0.461;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:362,400:0.52:762
chr14	106877821	rs371574132	CT	C	15066.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-15.329;QD=20.44;ReadPosRankSum=0.812;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:351,386:0.52:737
chr14	106877836	rs143740707	C	T	13695.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-15.803;QD=20.72;ReadPosRankSum=0.016;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:321,340:0.51:661
chr14	106877836	.	CC	TA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=2;MGOF=56;MMLQ=27;MQ=54.52;NF=75;NR=121;PP=2944;QD=20;SC=GCTGATGGAGCCACCAGAGAC;SbPval=0.71;Source=Platypus;TC=379;TCF=158;TCR=221;TR=196;WE=106877857;WS=106877830;set=Platypus	GT:AD:AF:DP	0/1:183,196:0.52:379
chr14	106877837	rs145759866	C	A	13569.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-15.865;QD=20.65;ReadPosRankSum=0.050;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:320,337:0.51:657
chr14	106877849	rs113422537	T	C	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-17.361;QD=2.50;ReadPosRankSum=-2.609;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:466,130:0.22:596
chr14	106877912	rs74093494	G	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:234,57:0.20:291
chr14	106878038	rs113208890	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.161;QD=0.44;ReadPosRankSum=-0.384;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:152,19:0.11:171
chr14	106878056	rs4774113	T	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:66,92:0.58:158
chr14	106878067	rs4774114	T	G	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.564;QD=22.01;ReadPosRankSum=2.863;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:62,79:0.56:141
chr14	106878071	rs4774115	A	G	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-2.557;QD=22.14;ReadPosRankSum=3.259;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:60,77:0.56:137
chr14	106878131	rs34777410	G	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr14	106878169	rs35934377	G	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.099;QD=14.07;ReadPosRankSum=-0.207;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr14	106878179	rs34552883	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-1.004;QD=15.26;ReadPosRankSum=-0.704;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr14	106922048	rs140769652	A	AT	1238.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr14	106922090	rs115402676	T	C	4445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=0.134;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:96,108:0.53:204
chr14	106922091	rs116801123	G	A	4526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.15;ReadPosRankSum=-0.054;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:100,114:0.53:214
chr14	106922093	rs113887627	T	C	4559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=0.329;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:105,116:0.52:221
chr14	106922094	rs369957951	T	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.490;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:180,45:0.20:225
chr14	106922099	rs150390470	C	CA	4595.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:121,119:0.50:240
chr14	106922368	rs6576168	C	T	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr14	106922411	rs8016915	A	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr14	106922435	rs8018413	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr14	106926107	rs7401587	T	C	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr14	106926145	rs7401516	C	G,T	4447.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=364;set=Intersection	GT:AF:DP	1/2:0.39,0.38:362
chr14	106926167	rs7401540	G	A	7341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-8.470;QD=14.68;ReadPosRankSum=0.698;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:302,198:0.40:500
chr14	106926176	rs7401517	C	T	7721.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:347,219:0.39:566
chr14	106926223	rs2467912	T	C	7812.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:631,408:0.39:1039
chr14	106926287	rs2467911	G	A	16043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=1974;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.615;QD=8.32;ReadPosRankSum=-2.359;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:1103,825:0.43:1928
chr14	106926311	rs4977158	T	G	6272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=2320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.519;QD=2.77;ReadPosRankSum=-3.190;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:1772,496:0.22:2268
chr14	106926388	rs2467910	T	C	19792.77	.	AC=1;AF=0.500;AN=2;DB;DP=2165;set=Intersection	GT:AD:AF:DP	0/1:1141,1006:0.47:2147
chr14	106937467	.	G	GC	1002.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	106940552	rs4977154	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:108,61:0.36:169
chr14	107013011	rs200990416	TC	T	10248.73	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:298,307:0.51:605
chr14	107013129	rs2073674	A	C	12507.77	.	AC=1;AF=0.500;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	0/1:457,605:0.57:1062
chr14	107034659	.	A	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-5.516;QD=4.84;ReadPosRankSum=0.697;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:133,27:0.17:160
chr14	107034665	.	TCA	T	909.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.046;QD=5.55;ReadPosRankSum=-0.161;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:132,32:0.20:164
chr14	107034668	.	T	TCC	882.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.699;QD=5.35;ReadPosRankSum=-1.830;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:134,31:0.19:165
chr14	107034679	rs370585113	C	T	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.308;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.963;QD=7.79;ReadPosRankSum=-0.535;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr14	107034681	.	G	C	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.062;QD=7.93;ReadPosRankSum=-0.230;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:121,39:0.24:160
chr14	107034705	rs200210193	G	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.667;QD=8.43;ReadPosRankSum=1.365;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:127,45:0.26:172
chr14	107034707	rs201053767	G	T	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.672;QD=8.58;ReadPosRankSum=1.520;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:125,44:0.26:169
chr14	107034789	rs72686840	G	A	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.720;QD=6.59;ReadPosRankSum=0.435;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:330,107:0.24:437
chr14	107034807	rs72686841	G	A	3608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.160;QD=6.87;ReadPosRankSum=-0.283;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:394,131:0.25:525
chr14	107034822	rs199503234	C	G	3712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.922;QD=6.20;ReadPosRankSum=-0.824;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:453,146:0.24:599
chr14	107034846	rs199610746	TC	GT	5553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.635;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.853;QD=7.10;ReadPosRankSum=0.029;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:606,176:0.23:782
chr14	107034854	rs201350766	C	A	5893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.863;QD=7.19;ReadPosRankSum=-0.063;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:637,183:0.22:820
chr14	107034863	rs199809351	C	T	6556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.395;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.617;QD=7.48;ReadPosRankSum=-0.615;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:678,198:0.23:876
chr14	107034869	rs200774123	AG	CA	6796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.738;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=4.105;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.623;QD=7.50;ReadPosRankSum=-0.596;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:702,204:0.23:906
chr14	107034873	rs199524561	GA	CC	6802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.066;ClippingRankSum=0.000;DB;DP=934;ExcessHet=3.0103;FS=6.354;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.599;QD=7.36;ReadPosRankSum=-0.794;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:713,211:0.23:924
chr14	107034920	rs72686843	C	T	4827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=1231;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.738;QD=4.04;ReadPosRankSum=0.737;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:868,327:0.27:1195
chr14	107034967	rs72686844	T	C	4290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=1282;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-4.260;QD=3.47;ReadPosRankSum=1.221;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:928,308:0.25:1236
chr14	107034981	rs2731202	G	C	8482.77	.	AC=1;AF=0.500;AN=2;DB;DP=1356;set=Intersection	GT:AD:AF:DP	0/1:832,482:0.37:1314
chr14	107035002	rs200171934	A	G	5363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=1364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.766;QD=4.04;ReadPosRankSum=0.333;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:1052,275:0.21:1327
chr14	107035020	rs75660488	C	T	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=1359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-4.099;QD=3.65;ReadPosRankSum=-1.144;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:1084,258:0.19:1342
chr14	107035038	rs201745085	GG	AT	6055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=1233;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.033;QD=4.96;ReadPosRankSum=-0.949;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:1003,218:0.18:1221
chr14	107035042	rs200794686	G	A	6091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;ClippingRankSum=0.000;DB;DP=1215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-3.036;QD=5.05;ReadPosRankSum=-0.819;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:991,215:0.18:1206
chr14	107035064	rs113207564	G	A	6105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.062;QD=5.69;ReadPosRankSum=-0.635;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:869,204:0.19:1073
chr14	107035066	.	C	T	5930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.083;QD=5.60;ReadPosRankSum=0.018;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:861,198:0.19:1059
chr14	107035068	.	C	G	5761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.078;QD=5.46;ReadPosRankSum=0.084;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:857,198:0.19:1055
chr14	107035163	rs201950873	GA	CC	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=2.381;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-11.080;QD=5.25;ReadPosRankSum=-0.139;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:442,102:0.19:544
chr14	107035168	.	T	A	2655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;ClippingRankSum=0.000;DP=524;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-11.403;QD=5.18;ReadPosRankSum=-0.177;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:421,92:0.18:513
chr14	107035182	.	T	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.000;DP=444;ExcessHet=3.0103;FS=3.685;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-12.229;QD=1.41;ReadPosRankSum=-0.375;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:365,70:0.16:435
chr14	107035206	.	CA	TG	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=2.265;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-13.902;QD=2.87;ReadPosRankSum=-0.541;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:248,38:0.13:286
chr14	107035212	.	G	A	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-13.296;QD=3.28;ReadPosRankSum=-2.046;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:225,38:0.14:263
chr14	107035252	rs150081772	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;MQ=59.16;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr14	107048944	rs35850880	A	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=41.25;MQRankSum=-0.842;QD=12.43;ReadPosRankSum=-0.155;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr14	107078567	rs2516904	T	C	19257.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:1,735:1.00:736
chr14	107078775	rs148981028	C	T	5718.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:362,294:0.45:656
chr14	107078790	rs1858692	C	T	16836.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr14	107082871	rs144729059	A	ATGC	2074.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.33;QD=45.10;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	107082879	rs59681319	C	CG	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.20;QD=44.15;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	107082881	rs59072447	T	TA	1942.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.01;QD=46.26;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	107082882	rs61261254	G	GA	1852.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.91;QD=45.19;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	107082889	rs4043174	A	ATTT	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.69;QD=44.13;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	107082897	rs2337902	T	A	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.94;QD=45.63;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	107113780	rs200164853	G	A	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.535;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.484;QD=2.80;ReadPosRankSum=-7.585;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:426,63:0.13:489
chr14	107113785	rs201264785	C	T	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.110;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-7.774;QD=2.64;ReadPosRankSum=-7.152;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:454,74:0.14:528
chr14	107113846	rs201523378	A	G	9785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-6.209;QD=9.04;ReadPosRankSum=4.447;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:800,282:0.26:1082
chr14	107113855	rs111637096	A	G	10559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=1122;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-5.868;QD=9.45;ReadPosRankSum=4.743;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:808,310:0.28:1118
chr14	107113858	rs111853090	A	G	10624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-6.336;QD=9.16;ReadPosRankSum=5.548;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:842,318:0.27:1160
chr14	107113968	rs113324720	C	A	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=871;ExcessHet=3.0103;FS=6.285;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-1.019;QD=3.02;ReadPosRankSum=2.120;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:667,191:0.22:858
chr14	107114009	rs11846079	T	C	11025.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:398,504:0.56:902
chr14	107131037	rs199906835	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.876;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-15.219;QD=2.00;ReadPosRankSum=-3.386;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:391,53:0.12:444
chr14	107131072	rs111633690	G	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.545;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-11.372;QD=0.98;ReadPosRankSum=3.542;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:617,62:0.09:679
chr14	107131076	rs112508867	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.808;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-10.786;QD=0.90;ReadPosRankSum=4.512;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:639,62:0.09:701
chr14	107170005	rs1141720	T	C	47747.77	.	AC=2;AF=1.00;AN=2;DB;DP=1247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=38.69;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,1234:1.00:1234
chr14	107170005	.	TGTCCGC	CGTCCGC,CGTCCGT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=24;MQ=59.61;NF=366,232;NR=308,202;PP=2760,2944;QD=20;SC=CTCGTGGATTTGTCCGCGGTA;SbPval=0.54;Source=Platypus;TC=674;TCF=366;TCR=308;TR=674,434;WE=107170019;WS=107169995;set=Platypus	GT:AF:DP	0/1:1.00:674
chr14	107170011	rs74089691	C	T	18235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=1317;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.444;QD=14.01;ReadPosRankSum=2.383;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:456,846:0.65:1302
chr14	107170219	rs2187989	C	G	11641.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:183,390:0.68:573
chr14	107170243	rs74089692	G	C	3271.73	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:348,177:0.34:525
chr14	107170398	rs4448834	C	T	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:60,158:0.72:218
chr14	107170410	rs10220412	G	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.235;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:118,70:0.37:188
chr14	107178795	rs10144331	A	G	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	107178832	rs10144402	A	G	8860.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr14	107178941	rs10133751	T	A	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:535,214:0.29:749
chr14	107178965	rs2073669	A	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:557,213:0.28:770
chr14	107178988	rs112642180	C	A	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:527,220:0.29:747
chr14	107179005	rs61048046	T	C	3251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.287;QD=4.69;ReadPosRankSum=-1.481;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:488,206:0.30:694
chr14	107179017	rs61732209	A	G	3452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.629;QD=5.52;ReadPosRankSum=0.387;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:427,198:0.32:625
chr14	107179106	rs10144703	C	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:201,95:0.32:296
chr14	107198866	rs1987970	T	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr14	107259830	rs78693499	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=6.223;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-8.234;QD=0.63;ReadPosRankSum=2.956;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:133,23:0.15:156
chr14	107259850	rs78504059	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=7.991;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-6.690;QD=1.97;ReadPosRankSum=3.085;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr14	107259865	rs76113443	A	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.807;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-5.339;QD=3.67;ReadPosRankSum=2.019;SOR=0.118;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr14	107259887	rs72692489	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	107259908	rs72692491	A	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr14	107282836	rs201902530	T	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=7.984;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-15.735;QD=1.66;ReadPosRankSum=-0.265;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:416,48:0.10:464
chr14	107282846	rs200859769	G	A	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=6.016;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-15.231;QD=1.81;ReadPosRankSum=1.245;SOR=1.475;set=HC	GT:AD:AF:DP	0/1:397,49:0.11:446
chr14	107282852	rs201336503	T	C	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-14.183;QD=2.27;ReadPosRankSum=1.421;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:364,50:0.12:414
chr14	107282859	rs201095197	G	A	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=7.101;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-13.608;QD=2.28;ReadPosRankSum=1.418;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:356,51:0.13:407
chr14	107282872	rs61741319	T	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=14.928;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-13.886;QD=0.55;ReadPosRankSum=3.248;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:358,41:0.10:399
chr14	107282909	rs202202987	T	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.523;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-12.272;QD=1.59;ReadPosRankSum=0.109;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:403,92:0.19:495
chr14	107282926	rs149038822	A	T	2724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.140;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-13.949;QD=4.54;ReadPosRankSum=5.598;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:480,120:0.20:600
chr14	107282935	rs201762529	A	T	2002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=4.531;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-14.327;QD=3.12;ReadPosRankSum=6.871;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:526,115:0.18:641
chr14	107282988	.	C	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DP=664;ExcessHet=3.0103;FS=6.199;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-17.501;QD=1.03;ReadPosRankSum=-5.368;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:582,68:0.10:650
chr14	107282994	.	G	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.118;ClippingRankSum=0.000;DP=648;ExcessHet=3.0103;FS=12.818;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-20.187;QD=0.84;ReadPosRankSum=-3.999;SOR=2.296;set=HC	GT:AD:AF:DP	0/1:587,50:0.08:637
chr14	107282996	.	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.307;ClippingRankSum=0.000;DP=646;ExcessHet=3.0103;FS=12.934;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-20.155;QD=0.41;ReadPosRankSum=-4.598;SOR=2.301;set=HC	GT:AD:AF:DP	0/1:585,50:0.08:635
chr14	107283008	rs113134619	A	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.806;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=12.518;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-21.454;QD=0.06;ReadPosRankSum=-6.786;SOR=2.445;set=HC	GT:AD:AF:DP	0/1:555,42:0.07:597
chr14	107283150	rs35227799	G	T	5529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=7.076;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.210;QD=22.12;ReadPosRankSum=0.466;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:106,144:0.58:250
chr14	107283156	rs10133664	A	G	5460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=4.418;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.787;QD=22.57;ReadPosRankSum=1.890;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:107,135:0.56:242
chr14	107283160	rs10133737	C	T	5270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.220;QD=21.60;ReadPosRankSum=2.195;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:109,135:0.55:244
chr15	20170150	rs10431885	C	T	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:227,96:0.30:323
chr15	20279303	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.87;MQRankSum=-1.255;QD=6.08;ReadPosRankSum=-1.483;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	20433755	rs4114043	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr15	20434090	rs4401027	G	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-0.299;QD=1.32;ReadPosRankSum=-0.638;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:384,78:0.17:462
chr15	20444703	rs28547997	G	A	3267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=1693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=3.708;QD=1.94;ReadPosRankSum=1.253;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:1356,327:0.19:1683
chr15	20444794	rs2722084	C	T	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=1114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-17.679;QD=2.27;ReadPosRankSum=-4.872;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:881,224:0.20:1105
chr15	20444806	.	G	T	2576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DP=913;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=3.795;QD=2.84;ReadPosRankSum=1.991;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:708,198:0.22:906
chr15	20446041	rs28429603	G	A	3845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.109;QD=3.58;ReadPosRankSum=0.701;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:910,165:0.15:1075
chr15	20446043	rs1823751	T	A	14553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=1065;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.259;QD=13.81;ReadPosRankSum=2.993;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:628,426:0.40:1054
chr15	20446047	rs28541280	T	G	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.540;QD=1.40;ReadPosRankSum=2.810;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:857,184:0.18:1041
chr15	20446050	rs28532993	G	A	3763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=1012;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.874;QD=3.75;ReadPosRankSum=1.233;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:852,153:0.15:1005
chr15	20447987	rs8024775	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr15	20448027	rs12148787	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=7.755;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-5.559;QD=1.11;ReadPosRankSum=-2.473;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:100,17:0.15:117
chr15	20448056	rs8024950	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:151,63:0.29:214
chr15	20448077	rs3963874	T	A,C	6876.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=346;set=Intersection	GT:AF:DP	1/2:0.24,0.75:341
chr15	20450242	rs2444187	G	C	7077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.563;ClippingRankSum=0.000;DB;DP=1343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-2.029;QD=5.27;ReadPosRankSum=-0.958;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:1027,315:0.23:1342
chr15	20450249	rs7176831	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=1397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-1.040;QD=0.21;ReadPosRankSum=-1.398;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:1216,178:0.13:1394
chr15	20450376	rs59373601	G	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.357;QD=1.68;ReadPosRankSum=0.631;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:550,125:0.19:675
chr15	20450433	rs60793038	G	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.624;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:196,37:0.16:233
chr15	20453896	rs2601517	G	C	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr15	20453913	rs2601516	C	T	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:69,123:0.64:192
chr15	20453992	rs4931912	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-4.981;QD=1.25;ReadPosRankSum=-2.356;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:223,44:0.16:267
chr15	20454025	rs4931913	A	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=3.423;MLEAC=1;MLEAF=0.500;MQ=55.01;MQRankSum=-5.615;QD=1.75;ReadPosRankSum=2.825;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:237,55:0.19:292
chr15	20454162	rs4931914	C	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,11:0.20:54
chr15	20456517	rs12593833	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr15	20456531	rs60306083	A	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=0.538;QD=0.78;ReadPosRankSum=-1.301;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr15	20456600	rs2924241	G	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:148,74:0.33:222
chr15	20456640	rs8041606	A	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:203,82:0.29:285
chr15	20456665	rs8026258	T	A	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-12.759;QD=10.60;ReadPosRankSum=-0.270;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:197,87:0.31:284
chr15	20456673	rs8033709	C	G	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-12.904;QD=10.71;ReadPosRankSum=-0.289;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:196,85:0.30:281
chr15	20456677	rs8037872	G	A	3047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-12.537;QD=10.58;ReadPosRankSum=-0.991;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:198,90:0.31:288
chr15	20456740	rs2954579	A	G	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:106,227:0.68:333
chr15	20456799	rs59849518	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-0.886;QD=1.82;ReadPosRankSum=0.922;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:235,52:0.18:287
chr15	20456828	rs56331633	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=0.087;QD=1.47;ReadPosRankSum=0.910;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:158,33:0.17:191
chr15	20457155	rs11856094	A	C	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-9.960;QD=4.07;ReadPosRankSum=2.836;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:218,41:0.16:259
chr15	20457157	rs11854770	C	T	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-9.285;QD=3.97;ReadPosRankSum=2.481;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:223,43:0.16:266
chr15	20457244	rs2060872	G	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=53.63;MQRankSum=-1.016;QD=3.02;ReadPosRankSum=1.639;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:478,139:0.23:617
chr15	20457291	rs6599891	T	C	21107.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;set=Intersection	GT:AD:AF:DP	1/1:98,896:0.90:994
chr15	20457319	rs8038741	C	A	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=1093;set=Intersection	GT:AD:AF:DP	0/1:779,312:0.29:1091
chr15	20457438	rs28738853	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.446;QD=1.14;ReadPosRankSum=0.117;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:196,37:0.16:233
chr15	20462450	rs2343219	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr15	20462507	rs2343218	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr15	20462585	rs3901622	A	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-3.648;QD=1.60;ReadPosRankSum=-0.360;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:253,55:0.18:308
chr15	20462603	rs2880572	G	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:300,112:0.27:412
chr15	20462690	rs6422224	T	G	12793.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:74,575:0.89:649
chr15	20462806	rs7179860	A	T	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.840;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr15	20462828	rs8039793	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.643;QD=0.55;ReadPosRankSum=0.225;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr15	20464736	rs112424577	C	CA	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.864;QD=1.98;ReadPosRankSum=-0.137;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:169,78:0.32:247
chr15	20464766	.	G	GTA	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.721;QD=2.17;ReadPosRankSum=0.119;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:290,50:0.15:340
chr15	20464792	rs59686762	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=1.663;QD=0.78;ReadPosRankSum=-2.112;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:302,56:0.16:358
chr15	20464844	rs151047586	AG	A	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=0.670;QD=0.53;ReadPosRankSum=-0.571;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:191,22:0.10:213
chr15	20464860	rs7177447	G	T	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=4.028;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=1.471;QD=14.71;ReadPosRankSum=-2.242;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:59,94:0.61:153
chr15	20465103	rs6599901	A	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-7.303;QD=5.26;ReadPosRankSum=-3.013;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:128,63:0.33:191
chr15	20465167	rs10794632	A	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-2.827;QD=2.67;ReadPosRankSum=1.310;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:230,34:0.13:264
chr15	20465181	rs67892369	T	TA	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.144;QD=0.16;ReadPosRankSum=0.648;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:203,32:0.14:235
chr15	20465182	rs10794633	T	A	797.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-3.896;QD=3.37;ReadPosRankSum=-0.975;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:202,35:0.15:237
chr15	20465246	rs8038116	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-2.490;QD=2.92;ReadPosRankSum=1.385;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr15	20465266	rs4983839	C	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-0.837;QD=1.98;ReadPosRankSum=-1.248;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr15	20466348	rs11248734	T	C	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.224;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:117,30:0.20:147
chr15	20466352	rs4983837	T	C	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.621;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr15	20466465	rs28660626	C	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=0.892;QD=0.61;ReadPosRankSum=-0.482;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:444,75:0.14:519
chr15	20466516	rs4983836	C	T	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-8.157;QD=16.60;ReadPosRankSum=-5.942;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:57,151:0.73:208
chr15	20466604	rs4983834	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	20467075	rs60364561	C	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.054;QD=4.66;ReadPosRankSum=-0.148;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:350,75:0.18:425
chr15	20467100	rs4983661	A	G	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.256;QD=3.97;ReadPosRankSum=-1.109;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:478,106:0.18:584
chr15	20467242	rs59808209	C	T	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=1.198;QD=2.89;ReadPosRankSum=0.341;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:274,77:0.22:351
chr15	20467375	.	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-1.964;QD=1.23;ReadPosRankSum=-2.090;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:79,14:0.15:93
chr15	20467994	rs2601503	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr15	20468050	rs4983831	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-3.513;QD=1.01;ReadPosRankSum=0.556;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:183,34:0.16:217
chr15	20476906	rs4983827	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.318;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:496,120:0.19:616
chr15	20476986	rs7175332	G	A	4884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=2620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.279;QD=1.88;ReadPosRankSum=0.372;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:2117,487:0.19:2604
chr15	20482111	rs11629632	G	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.382;QD=2.68;ReadPosRankSum=0.134;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:464,125:0.21:589
chr15	20488870	rs299671	G	A	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=1012;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=0.332;QD=2.19;ReadPosRankSum=-1.049;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:799,209:0.21:1008
chr15	20588563	rs2291972	A	G	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:40,87:0.69:127
chr15	20588676	rs201106169	TTC	T	3500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=1.299;QD=5.52;ReadPosRankSum=0.876;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:503,131:0.21:634
chr15	20588705	rs4931826	C	A	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:352,293:0.45:645
chr15	20614036	rs11454064	A	AT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.596;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:240,53:0.18:293
chr15	20614087	rs57902346	G	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.819;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:94,16:0.15:110
chr15	20874863	rs62000628	T	C	1535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.423;QD=2.39;ReadPosRankSum=1.397;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:506,136:0.21:642
chr15	20874897	rs7497658	A	G	8316.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:384,429:0.53:813
chr15	20875085	rs184187019	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:76,17:0.18:93
chr15	20875094	rs12148785	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.019;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:50,21:0.30:71
chr15	20875142	rs8025754	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-2.364;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr15	20876423	rs10902996	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.562;QD=0.28;ReadPosRankSum=0.694;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:273,42:0.13:315
chr15	20876515	rs6422240	A	G	6056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-3.692;QD=9.40;ReadPosRankSum=1.505;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:327,317:0.49:644
chr15	22156928	rs150801989	G	C	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:85,202:0.70:287
chr15	22318824	rs35131467	AC	A	1037.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr15	22318963	rs1429506	A	T	16840.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr15	22319174	rs6602966	T	C	7014.77	.	AC=1;AF=0.500;AN=2;DB;DP=1067;set=Intersection	GT:AD:AF:DP	0/1:664,392:0.37:1056
chr15	22319253	rs6602967	A	G	6217.77	.	AC=1;AF=0.500;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	0/1:615,349:0.36:964
chr15	22319410	rs8029027	G	A	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:257,166:0.39:423
chr15	22319415	rs199880629	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-4.141;QD=0.28;ReadPosRankSum=-0.195;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:404,59:0.13:463
chr15	22319428	rs58008868	G	A	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:360,231:0.39:591
chr15	22319445	rs6602968	G	A	5682.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:438,304:0.41:742
chr15	22319455	rs58319275	G	C	5352.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:505,307:0.38:812
chr15	22319483	rs995427	G	A	2466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=6.014;QD=2.38;ReadPosRankSum=-0.299;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:824,214:0.21:1038
chr15	22319497	rs1366875	G	C	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=6.012;QD=2.47;ReadPosRankSum=-1.508;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:848,219:0.21:1067
chr15	22332751	rs930109	T	C	12410.77	.	AC=1;AF=0.500;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	0/1:352,579:0.62:931
chr15	22344871	rs28571003	A	G	24623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-5.595;QD=33.78;ReadPosRankSum=-0.703;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:111,618:0.85:729
chr15	22344879	rs1366870	C	G	23841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-6.026;QD=34.50;ReadPosRankSum=-1.084;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:114,577:0.84:691
chr15	22344951	rs1366871	T	C	2551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.608;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=43.541;MLEAC=1;MLEAF=0.500;MQ=52.64;MQRankSum=-10.548;QD=12.57;ReadPosRankSum=-5.044;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:99,104:0.51:203
chr15	22345038	rs1429471	T	C	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.467;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=41.565;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-12.132;QD=4.81;ReadPosRankSum=-1.498;SOR=3.160;set=HC	GT:AD:AF:DP	0/1:126,44:0.26:170
chr15	22345134	rs13380116	C	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=52.13;MQRankSum=-3.479;QD=3.16;ReadPosRankSum=0.665;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:373,122:0.25:495
chr15	22368743	rs142998851	C	T	19983.77	.	AC=1;AF=0.500;AN=2;DB;DP=2142;set=Intersection	GT:AD:AF:DP	0/1:1146,982:0.46:2128
chr15	22368862	rs1835183	G	A	6988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=2088;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.779;QD=3.37;ReadPosRankSum=-1.231;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:1581,495:0.24:2076
chr15	22368905	rs1835182	G	A	7689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=2373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.872;QD=3.26;ReadPosRankSum=1.447;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:1791,568:0.24:2359
chr15	22369248	rs491208	T	C	22752.77	.	AC=1;AF=0.500;AN=2;DB;DP=1123;set=Intersection	GT:AD:AF:DP	0/1:158,964:0.86:1122
chr15	22369290	rs12593418	A	G	4494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=1312;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=-1.276;QD=3.45;ReadPosRankSum=-1.274;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:975,326:0.25:1301
chr15	22369426	rs4087943	G	A	21230.77	.	AC=2;AF=1.00;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	1/1:103,926:0.90:1029
chr15	22382739	rs2671839	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.08;QD=29.55;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	22383066	rs559754	A	G	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:77,180:0.70:257
chr15	22383189	rs1820851	G	A	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:85,197:0.70:282
chr15	22383482	rs3841636	GA	G	2301.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,66:0.71:93
chr15	22413700	rs267612	A	G	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.726;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=10.309;MLEAC=1;MLEAF=0.500;MQ=48.57;MQRankSum=-9.074;QD=19.01;ReadPosRankSum=-0.480;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:40,92:0.70:132
chr15	22413825	rs267613	C	T	10013.77	.	AC=1;AF=0.500;AN=2;DB;DP=1168;set=Intersection	GT:AD:AF:DP	0/1:648,516:0.44:1164
chr15	22414393	rs113528096	CA	C,CAAAA	2183.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.829;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.62;MQRankSum=0.962;QD=13.16;ReadPosRankSum=-0.251;SOR=0.605;set=HC	GT:AD:AF:DP	1/2:38,52,76:0.31,0.46:166
chr15	22440816	rs4505267	A	G	15199.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:62,654:0.91:716
chr15	22448405	rs8042576	C	T	4392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=1424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.918;QD=3.12;ReadPosRankSum=-0.289;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:1079,330:0.23:1409
chr15	22466075	rs374414908	C	T	5669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=1305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.156;QD=4.36;ReadPosRankSum=-1.904;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:933,367:0.28:1300
chr15	22466126	rs1985064	A	C	20878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=1946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.232;QD=10.82;ReadPosRankSum=2.696;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:913,1016:0.53:1929
chr15	22482858	rs1807224	A	G	9938.77	.	AC=1;AF=0.500;AN=2;DB;DP=1718;set=Intersection	GT:AD:AF:DP	0/1:1099,586:0.35:1685
chr15	22483137	rs4779321	G	A	5527.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:244,255:0.51:499
chr15	22483277	rs753259	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:111,45:0.29:156
chr15	22489842	rs368258155	G	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.245;QD=2.48;ReadPosRankSum=-1.053;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr15	22489847	rs372456640	C	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-5.116;QD=2.18;ReadPosRankSum=-1.326;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr15	22489900	rs113115466	T	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-5.088;QD=3.78;ReadPosRankSum=1.160;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:142,28:0.16:170
chr15	22489921	rs76846225	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.139;QD=3.00;ReadPosRankSum=-0.057;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:176,31:0.15:207
chr15	22489958	rs111826301	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.087;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:183,26:0.12:209
chr15	22489966	rs72687799	A	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.683;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:169,22:0.12:191
chr15	22489988	rs72687801	G	A	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.636;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr15	22490018	rs10152312	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.024;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr15	22490019	rs112521162	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.457;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:90,10:0.10:100
chr15	22490056	rs372954719	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-2.100;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr15	22513141	.	G	A	294.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr15	22513188	rs28635903	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr15	22513271	rs28599926	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr15	22513290	rs140186176	TC	T	1505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.238;QD=23.90;ReadPosRankSum=-0.207;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:23,40:0.63:63
chr15	22513314	rs111428232	G	A	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.645;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.733;QD=7.49;ReadPosRankSum=0.160;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr15	22835967	rs34465581	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.287;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	22836187	rs113865539	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr15	22840211	rs201759882	T	TC	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr15	22845832	rs73409389	G	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.313;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:162,54:0.25:216
chr15	22845903	rs73409391	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:70,16:0.19:86
chr15	22848150	rs372317024	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.075;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.411;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	22851155	rs73411310	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr15	22866646	rs3213933	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr15	22867447	rs76351885	A	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr15	22868725	rs112694815	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	22873325	rs1046860	A	G	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-3.536;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:115,59:0.34:174
chr15	22925851	rs4134802	C	T	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.619;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:373,130:0.26:503
chr15	22926229	rs2289824	G	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr15	22926307	rs7403459	A	G	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	22927952	rs2289823	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	22928533	rs12148589	G	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	22929905	rs2305094	CA	GG	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	22933456	.	G	T	327	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=2;MGOF=31;MMLQ=27;MQ=59.53;NF=15;NR=0;PP=327;QD=24.1180808365;SC=GCAGATGACTGTAGGGGAAAG;SbPval=1.0;Source=Platypus;TC=17;TCF=15;TCR=2;TR=15;WE=22933464;WS=22933446;set=Platypus	GT:AD:AF:DP	1/1:2,15:0.88:17
chr15	22933511	rs1867599	A	T	145.80	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	22939192	rs11633474	G	A	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:52,124:0.70:176
chr15	22945314	rs8029108	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	22946944	rs2289821	T	G	4614.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:93,217:0.70:310
chr15	22947098	rs74003069	C	T	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:109,270:0.71:379
chr15	22955013	rs2289816	T	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	22955307	rs3217548	AC	A	1930.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	22958104	rs4134803	A	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr15	22958136	rs56978336	GT	G	768.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr15	22960700	rs2289817	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr15	22960868	rs2289818	G	C	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:116,221:0.66:337
chr15	22960968	rs55693319	C	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr15	22962184	rs7359217	T	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.38;ReadPosRankSum=-0.522;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	22969232	rs7170637	G	A	14184.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr15	22991234	rs7171025	C	T	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:57,186:0.77:243
chr15	22993170	rs3751568	A	C	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:40,128:0.76:168
chr15	22993214	rs3751569	G	T	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr15	22993275	.	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.511;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr15	22997620	rs116103792	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.596;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr15	22999940	rs11307802	TG	T	471.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=60.72;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	23006910	rs28572108	C	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr15	23059394	rs1991922	C	T	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	23060998	rs74003090	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr15	23131745	rs7181884	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	23138992	rs202076313	G	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	23200698	rs58552405	A	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=44.77;MQRankSum=-2.664;QD=10.41;ReadPosRankSum=0.398;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr15	23259270	rs200991698	A	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.55;MQRankSum=-2.622;QD=17.93;ReadPosRankSum=1.317;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr15	23300033	rs1058831	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-5.522;QD=2.29;ReadPosRankSum=0.861;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:110,30:0.21:140
chr15	23300172	rs28540767	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.155;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr15	23685004	rs34879341	G	GCAT	13394.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=45.56;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr15	23685541	rs375981990	CT	C	21337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;MQRankSum=-0.374;QD=26.15;ReadPosRankSum=0.423;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:4,812:1.00:816
chr15	23685618	.	C	T	2321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DP=486;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=3.346;QD=4.85;ReadPosRankSum=0.097;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:336,143:0.30:479
chr15	23685639	rs374969803	C	T	4994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-3.384;QD=15.37;ReadPosRankSum=0.986;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:97,228:0.70:325
chr15	23685895	rs111853398	C	T	4178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.291;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.990;QD=5.03;ReadPosRankSum=1.066;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:550,281:0.34:831
chr15	23685922	.	C	CCCGCATCTTCTCCTCCTGCTT	13970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.399;ClippingRankSum=0.000;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-10.443;QD=16.19;ReadPosRankSum=-0.283;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:552,311:0.36:863
chr15	23686001	.	C	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=882;ExcessHet=3.0103;FS=3.379;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-6.050;QD=0.75;ReadPosRankSum=1.883;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:780,79:0.09:859
chr15	23686010	.	T	TCTC	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DP=859;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-6.464;QD=0.77;ReadPosRankSum=-2.796;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:759,79:0.09:838
chr15	23686019	.	G	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-9.112;QD=0.89;ReadPosRankSum=-8.629;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:710,69:0.09:779
chr15	23686045	rs74904390	A	G	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.074;QD=3.94;ReadPosRankSum=2.067;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:555,212:0.28:767
chr15	23686598	rs35708006	T	C	4765.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:90,215:0.70:305
chr15	23686670	.	TCCGCATCTTCTCCTCCTGCTC	T	5554.73	.	AC=1;AF=0.500;AN=2;DP=266;set=Intersection	GT:AD:AF:DP	0/1:90,145:0.62:235
chr15	23686924	rs58446506	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	23687708	rs73423916	C	A	7440.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:171,349:0.67:520
chr15	23687812	rs2344891	T	G	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	23687818	rs72495057	CT	C	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.095;QD=8.59;ReadPosRankSum=-0.090;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:35,49:0.58:84
chr15	23688944	rs4778531	A	G	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:65,185:0.74:250
chr15	23689236	rs113685354	C	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:77,148:0.66:225
chr15	23689464	rs111541638	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr15	23689510	rs12902150	C	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:40,130:0.76:170
chr15	23690329	rs368740912	GAGAA	G	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	23690359	rs2344894	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.97;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	23811592	rs2239669	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr15	23889033	rs9785	G	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	23889284	.	G	C	1363.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr15	23890198	rs180690391	T	C	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:147,141:0.49:288
chr15	23892212	rs367737053	A	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr15	23932467	rs3743340	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr15	24921337	rs149264582	T	C	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:153,174:0.53:327
chr15	24921493	rs34391654	T	G	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:114,122:0.52:236
chr15	24922230	rs3742950	C	G	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr15	24922274	rs144446064	C	G	3899.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:250,204:0.45:454
chr15	24923390	rs60574723	C	T	10209.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr15	25200303	rs220029	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr15	25231988	rs59131251	C	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr15	25232026	rs3832976	CGT	C	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,15:0.20:75
chr15	25307562	rs7402542	A	G	9096.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr15	25310440	rs6576402	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	25319287	.	GT	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.918;QD=1.18;ReadPosRankSum=-0.423;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr15	25326425	rs1972694	A	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	25415693	rs2739837	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=0.022;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	25415693	.	TG	CA	32	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=32;QD=42.7339374311;SC=ATGGTGACCATGGAGGAAGAC;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=2;WE=25415702;WS=25415692;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr15	25415694	rs1883008	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=0.447;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr15	25415759	rs2714734	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr15	25415809	rs2739838	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr15	25423956	rs34859712	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:125,72:0.37:197
chr15	25425643	rs2714763	C	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr15	25425827	rs61555256	C	CG	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr15	25429458	rs2011153	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr15	25432842	rs2017626	C	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr15	25438493	rs7172888	A	G	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr15	25438610	rs17841114	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr15	25442956	rs7496915	C	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:93,71:0.43:164
chr15	25444577	rs11630308	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,52:0.44:119
chr15	25449614	rs2739779	T	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr15	25449737	rs2739780	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr15	25451471	rs7176931	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr15	25455187	rs2739782	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr15	25457102	rs73362147	C	A	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,89:0.56:159
chr15	25460526	rs60315801	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	25472438	rs8032143	T	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr15	25472451	rs12324028	C	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr15	25474157	rs58296848	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr15	25479337	rs2714758	A	G	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:256,198:0.44:454
chr15	25487116	rs2719917	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr15	25488786	rs2719918	T	G	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:86,101:0.54:187
chr15	25494501	rs2739804	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr15	25620975	rs71418040	TATC	T	1258.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr15	25650695	rs35086186	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.814;QD=4.86;ReadPosRankSum=-0.195;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr15	25652101	rs8032479	C	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	25924582	rs114768815	C	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:106,77:0.42:183
chr15	25924798	rs9324127	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,93:0.53:176
chr15	25925094	rs3816800	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr15	25925195	rs3736186	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr15	25926043	rs2076746	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.338;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr15	25926186	rs2076743	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr15	25926325	rs35849027	T	TAAC	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=-0.795;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	25937004	rs2066705	C	T	1749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.054;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:73,86:0.54:159
chr15	25953068	rs2291355	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	25961964	rs10873607	A	G	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	25963599	rs8024374	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	25967085	rs1564828	T	C	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	25972202	rs33946132	C	CAAAA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.869;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr15	25981177	rs72625120	C	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.637;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:67,49:0.42:116
chr15	26026139	rs8038726	A	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	26260477	rs12437822	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.881;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr15	26861069	rs77539004	G	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr15	27018187	.	TGCC	T	320.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr15	27019040	rs4906901	C	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr15	27061564	.	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.173;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr15	27128254	rs73363996	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr15	27182336	rs149156018	G	A	4152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.127;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:193,211:0.52:404
chr15	27182357	rs140682	T	C	11833.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.30;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr15	27182361	rs186262515	G	A	3025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.692;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:182,159:0.47:341
chr15	27188459	rs140685	C	T	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	27193184	rs199741124	C	T	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-0.455;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:125,109:0.47:234
chr15	27216746	rs2288694	C	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,78:0.58:134
chr15	27222266	rs35752220	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr15	27271789	rs35270520	G	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr15	27516740	rs76888516	GAGTC	G	3613.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	27586133	.	G	A	861.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr15	27772892	rs2303879	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	27775699	rs112590850	T	C	2884.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.38;ReadPosRankSum=1.065;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:1,64:0.98:65
chr15	27775703	rs113031201	A	C	3040.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.09;ReadPosRankSum=0.612;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr15	27890359	rs1841875	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr15	27890571	rs5811500	GT	G	521.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	28096453	rs8025804	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	28096538	rs1800419	A	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.309;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr15	28116173	rs12594397	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr15	28116275	rs7175046	G	C	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	28211758	rs4778218	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28260053	rs1800401	G	A	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	28267533	rs113044747	G	GTGGGTGAGAA	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	28270243	rs73375883	G	A	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	28277060	rs972334	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	28357230	rs4778245	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	28358492	rs75620448	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr15	28359744	rs7495441	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	28360081	rs7497014	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	28360888	rs5811542	C	CT	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	28361764	rs4778247	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	28362459	rs7495875	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr15	28362484	rs74007959	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr15	28375872	rs6416603	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28377196	rs10627923	C	CCT	2617.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	28377772	rs8025035	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr15	28388274	rs56013620	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	28389880	rs1133496	G	A	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:165,196:0.54:361
chr15	28397812	rs7165158	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.88;ReadPosRankSum=1.025;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr15	28412872	rs61756152	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr15	28414665	rs7494786	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	28419566	rs201182375	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.622;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.572;QD=1.65;ReadPosRankSum=-2.169;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr15	28419619	rs141441362	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.548;QD=2.26;ReadPosRankSum=0.672;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr15	28419695	rs149592795	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.125;QD=2.06;ReadPosRankSum=-1.167;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:107,29:0.21:136
chr15	28422026	rs6497284	T	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr15	28422471	rs73362603	C	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr15	28422684	rs73362604	C	A	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:135,119:0.47:254
chr15	28422819	rs58164482	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr15	28424100	rs9806328	C	T	3247.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:192,168:0.47:360
chr15	28437061	rs72714143	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr15	28443658	rs8041209	G	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr15	28443682	rs8024600	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr15	28447282	rs74005645	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.46;MQRankSum=-1.242;QD=9.47;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	28493688	rs57189560	A	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr15	28493737	rs78460234	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr15	28501195	rs111681126	C	A	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,109:0.47:231
chr15	28517258	.	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-3.328;QD=14.92;ReadPosRankSum=0.672;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	28517261	rs374453464	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.24;MQRankSum=-3.328;QD=14.92;ReadPosRankSum=0.672;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	28517282	.	TG	GC	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-2.829;QD=17.29;ReadPosRankSum=0.062;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	28517287	.	T	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-2.829;QD=17.29;ReadPosRankSum=0.062;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	28517291	.	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-2.829;QD=17.29;ReadPosRankSum=0.127;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	28517295	.	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-2.829;QD=17.03;ReadPosRankSum=-0.366;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	28517303	.	T	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-2.767;QD=17.62;ReadPosRankSum=-0.224;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr15	28517305	.	T	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-2.767;QD=18.47;ReadPosRankSum=-0.504;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr15	28517310	rs199951842	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-2.907;QD=15.99;ReadPosRankSum=0.594;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr15	28517436	rs75181529	T	C	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:70,96:0.58:166
chr15	28517454	rs28457230	G	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-1.317;QD=0.52;ReadPosRankSum=0.340;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:153,26:0.15:179
chr15	28517539	rs80340439	G	A	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-3.544;QD=10.96;ReadPosRankSum=-0.726;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:77,38:0.33:115
chr15	28517546	rs79819039	G	C	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.174;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-3.499;QD=11.96;ReadPosRankSum=-1.761;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chr15	28517555	rs112104080	T	TC	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr15	28517574	.	C	CTT	121	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=45;MMLQ=15;MQ=55.93;NF=0;NR=9;PP=121;QD=16.6666666667;SC=AACAGATTAACTTCTTTTCTT;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=9;WE=28517596;WS=28517564;set=Platypus	GT:AD:AF:DP	0/1:11,9:0.45:20
chr15	28517577	rs141410978	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=14.182;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-6.573;QD=4.04;ReadPosRankSum=-2.333;SOR=3.694;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr15	28517582	rs141043009	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=11.162;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-6.427;QD=4.30;ReadPosRankSum=-2.124;SOR=3.551;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr15	28517587	rs150960375	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-5.776;QD=1.34;ReadPosRankSum=-1.738;SOR=2.679;set=HC	GT:AD:AF:DP	0/1:31,4:0.11:35
chr15	28517588	rs145604050	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.666;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-5.599;QD=1.42;ReadPosRankSum=-2.071;SOR=2.642;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr15	28517969	rs2016277	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	28518102	rs75893088	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-4.835;QD=3.84;ReadPosRankSum=-0.472;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr15	28518112	rs200859595	C	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-5.177;QD=3.86;ReadPosRankSum=-0.363;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr15	28518114	.	TC	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-5.177;QD=3.31;ReadPosRankSum=-0.337;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr15	28518126	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-6.805;QD=2.75;ReadPosRankSum=-0.439;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr15	28518130	.	G	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-6.579;QD=2.93;ReadPosRankSum=-0.925;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr15	28518135	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-6.273;QD=1.65;ReadPosRankSum=0.140;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr15	28518136	rs201979656	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-6.273;QD=1.65;ReadPosRankSum=0.220;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr15	28518179	rs79399455	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-5.410;QD=3.35;ReadPosRankSum=0.968;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr15	28518184	rs75964737	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-5.410;QD=3.35;ReadPosRankSum=1.207;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr15	28518228	.	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.605;QD=2.73;ReadPosRankSum=-0.814;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr15	28518234	rs371290733	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-4.017;QD=2.43;ReadPosRankSum=-1.072;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr15	28519269	rs16950972	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	28632854	rs375737031	A	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-3.330;QD=2.06;ReadPosRankSum=0.635;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr15	28632859	rs374320304	A	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-3.330;QD=2.06;ReadPosRankSum=0.635;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr15	28912683	.	G	GTGTGC	541.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.17;QD=41.67;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28953403	rs202182931	G	A	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-2.400;QD=18.98;ReadPosRankSum=-0.633;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr15	28953412	rs200486442	C	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-2.511;QD=18.19;ReadPosRankSum=0.058;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr15	29008641	rs372586219	GCCCCTCCATGGATCACCGGCA	G	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-0.134;QD=10.04;ReadPosRankSum=1.815;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr15	29009050	rs112804410	A	AC	11985.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	29009296	rs192006781	T	G	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=1.557;QD=13.89;ReadPosRankSum=-0.326;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:33,61:0.65:94
chr15	29009311	rs142374134	A	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=49.66;MQRankSum=0.324;QD=7.58;ReadPosRankSum=-2.075;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr15	29043305	rs13379580	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	29043511	rs1877706	T	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	29052021	rs4036877	A	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.69;QD=26.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	29060797	rs142382383	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr15	29061956	rs71467359	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr15	29062008	rs116558540	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr15	29090527	.	G	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.80;MQRankSum=1.150;QD=5.96;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	29093527	rs58669327	TG	T	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr15	29347019	rs8040932	T	C	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	29368392	rs28498173	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.146;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr15	29385149	rs4779760	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr15	29385204	rs4779761	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr15	29386593	rs8037972	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-0.586;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr15	29386599	rs200959238	T	TC	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.256;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	29390923	rs77895254	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.447;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	29394174	rs74691070	A	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr15	29397593	rs35322773	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr15	29415560	rs3751562	G	A	5278.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:195,264:0.58:459
chr15	29415698	rs3751563	A	G	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	29416882	rs74007099	C	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr15	29416901	rs2279482	A	G	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,80:0.52:155
chr15	29417057	rs17749179	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr15	29417099	rs12438521	G	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	29417146	rs2279481	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=0.548;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr15	29417146	.	GTG	ATC	219	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=29;MMLQ=24;MQ=60.0;NF=2;NR=6;PP=219;QD=34.0584843578;SC=CAGGCCTGCCGTGGGTCAAGT;SbPval=0.82;Source=Platypus;TC=14;TCF=5;TCR=9;TR=8;WE=29417156;WS=29417136;set=Platypus	GT:AD:AF:DP	1/0:6,8:0.57:14
chr15	29417148	rs2279480	G	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=0.391;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr15	29418512	rs61736882	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.649;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	29418573	rs2672680	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	29418745	rs968476	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr15	29428556	rs8023368	C	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr15	29444130	rs59230279	GC	G	1232.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.37;QD=35.22;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	29561291	rs61749506	C	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr15	29561811	rs77216990	C	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr15	29561840	rs78199042	T	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.709;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:94,56:0.37:150
chr15	29561866	rs114318320	G	A	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-2.717;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:82,56:0.41:138
chr15	29862654	rs111717681	C	G	75.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	30008856	rs7166878	C	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	30008889	rs2229518	G	A	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=4.417;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr15	30010084	rs45451195	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	30011427	rs11073215	C	T	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	30018553	rs4073316	A	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.438;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr15	30025028	rs45476796	G	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr15	30029704	rs45472792	TTAAA	T	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr15	30052291	rs45610140	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.184;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr15	30053322	rs45475400	A	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr15	30064490	.	C	A	54.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	30064495	rs1383315	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	30069920	rs34542662	AT	A	258.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	30070198	rs1904812	A	C	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	30260991	.	G	A	2493.77	.	AC=1;AF=0.500;AN=2;DP=213;set=Intersection	GT:AD:AF:DP	0/1:91,121:0.57:212
chr15	30336850	rs7173045	G	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr15	30337377	rs10775120	G	C	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	30659701	.	C	T	894.77	.	AC=1;AF=0.500;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	0/1:126,58:0.32:184
chr15	30663397	rs199781709	A	AAAC	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.64;MQRankSum=-0.566;QD=15.25;ReadPosRankSum=-0.328;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	30664453	rs149526715	C	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.40;QD=24.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	30700159	rs62016504	A	G	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-17.380;QD=2.03;ReadPosRankSum=0.661;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:434,59:0.12:493
chr15	30700168	.	C	CTTG	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DP=479;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-16.877;QD=2.01;ReadPosRankSum=1.156;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:421,56:0.12:477
chr15	30700263	rs2564642	T	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	30700278	rs62016505	C	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	30925674	rs199608930	G	GA	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.17;MQRankSum=-1.444;QD=8.15;ReadPosRankSum=-0.245;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:36,30:0.45:66
chr15	30927867	rs141692578	A	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr15	31048067	rs116457401	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-3.611;QD=4.12;ReadPosRankSum=-1.465;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr15	31048088	rs61998400	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr15	31048241	rs11633095	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr15	31060115	rs4779494	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr15	31212684	rs10163148	G	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr15	31212901	rs76554225	C	T	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr15	31214649	rs1474382	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.140;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-2.094;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr15	31218164	rs2959037	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr15	31220709	rs61136501	T	TTGTGTGTGTGTG,TTGTGTGTGTG	526.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	0/1:0.44:39
chr15	31233220	rs2955792	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	31233352	rs3840035	GTGAC	G	2058.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr15	31234064	rs6493352	C	T	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:81,100:0.55:181
chr15	31235005	rs3512	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=0.272;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	31235357	rs2293319	C	T	123.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	31238783	rs11637469	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.702;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr15	31244263	rs2955789	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	31246840	rs34294266	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	31267123	rs77719498	A	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr15	31283136	rs3743231	A	C	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.290;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:144,126:0.47:270
chr15	31283844	rs28564430	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	31294654	rs3784588	C	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:115,55:0.32:170
chr15	31330280	rs2288242	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-1.064;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr15	31339151	rs11636121	A	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	31341461	rs10851487	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.129;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr15	31341516	rs2288241	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr15	31342744	rs1035705	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr15	31355463	rs202031791	C	T	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,107:0.46:231
chr15	31357138	rs919001	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr15	31359457	rs3784599	T	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr15	31362352	rs2241493	C	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	31369123	rs4779816	A	G	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	31369223	rs4779817	C	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	31373727	rs4779504	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr15	31453056	rs12906081	T	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:133,116:0.47:249
chr15	31521505	rs34406656	CG	C	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.72;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr15	31523012	rs75426642	G	A	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-1.655;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:56,49:0.47:105
chr15	31746320	rs12102124	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr15	31776004	rs2338682	C	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	31776210	rs199744400	TGGC	T	918.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=41.76;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	31793930	rs7164569	A	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	31818380	rs34483391	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.48;ReadPosRankSum=1.139;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr15	31818392	rs75305397	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.831;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	31823108	rs7176771	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	31862437	rs12915326	C	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr15	31862448	rs1459198	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	31930149	rs7168828	C	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.600;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr15	31941978	rs74396681	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr15	31942073	rs12904841	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-1.126;QD=13.59;ReadPosRankSum=-0.757;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr15	31947241	rs16955808	T	C	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-0.558;QD=9.90;ReadPosRankSum=0.398;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr15	32393486	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.608;QD=1.01;ReadPosRankSum=1.241;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr15	32393663	rs28650375	C	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	32450704	rs201822909	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:133,85:0.39:218
chr15	32452011	.	A	G	60	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=24;MQ=49.75;NF=0;NR=5;PP=60;QD=18.9542425094;SC=AGAGTCACCCAGGCCCAAGTA;SbPval=1.0;Source=Platypus;TC=16;TCF=2;TCR=14;TR=5;WE=32452019;WS=32452001;set=Platypus	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	32971934	rs7177843	C	T	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr15	32984196	rs6494593	A	G	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	33068888	rs34593790	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.083;QD=4.53;ReadPosRankSum=1.051;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	33096638	.	CGGGGGGGG	C	54.70	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	33096663	rs12898436	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	33096666	rs12900156	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	33191023	rs173224	A	G	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	33200867	rs66965190	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	33202764	rs114923377	A	G	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr15	33218589	rs36016183	C	CTCT	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	33261232	rs2930131	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr15	33357262	rs2306277	A	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.180;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:46,61:0.57:107
chr15	33446270	rs61744894	C	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:107,123:0.53:230
chr15	33447125	.	C	A	319.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr15	33757840	rs2596163	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	33757867	rs8027137	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.046;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr15	33765761	rs2245508	A	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	33795710	rs2572204	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	33831719	rs16971988	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.849;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	33833213	rs16972012	T	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr15	33836055	rs3816092	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr15	33840414	rs1435100	A	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	33842546	rs753945	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr15	33855175	rs16972317	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr15	33872143	rs8041153	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr15	33872177	rs674155	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:79,30:0.28:109
chr15	33873657	rs668570	C	T	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr15	33873751	rs2077268	G	A	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:123,126:0.51:249
chr15	33873901	rs748298	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr15	33876517	rs2643364	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	33876543	rs624954	C	T	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	33916152	rs2229118	T	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr15	33925062	rs3816940	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	33925364	rs2291732	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr15	33926996	rs16957026	A	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr15	33928785	rs35203574	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	33939495	rs2291736	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr15	33954652	rs4780144	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:102,108:0.51:210
chr15	33962559	rs11072596	G	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.61;ReadPosRankSum=-1.222;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	33990041	rs3736531	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr15	33990250	rs1111611	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	33993242	rs61996329	T	C	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.203;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:90,80:0.47:170
chr15	34014913	rs2293028	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr15	34016274	rs6495228	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	34018450	rs115633362	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	34030887	rs12907197	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	34032131	rs41279212	G	A	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	34032225	rs61219904	G	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	34038511	rs3812937	A	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	34060740	rs2278317	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr15	34064043	rs1429754	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	34065658	rs3086242	A	AT	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr15	34094048	rs35048413	G	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	34094201	rs2115747	C	T	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=0.474;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:163,106:0.39:269
chr15	34099598	rs28540970	A	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,56:0.44:126
chr15	34099679	rs28696774	G	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:138,111:0.45:249
chr15	34099822	rs2879436	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,53:0.45:118
chr15	34099880	rs28459255	C	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr15	34103272	rs4780181	C	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	34111876	rs10631080	A	AAAAT	2666.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:3,62:0.95:65
chr15	34112825	rs1036005	C	T	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	34112865	rs1036006	G	A	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	34112906	rs1036007	C	A	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:27,188:0.87:215
chr15	34113054	rs3815965	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	34113397	rs74008335	C	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr15	34113454	rs35254800	AT	A	1666.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	34113536	rs2288614	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	34113822	rs2288616	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr15	34115088	rs8032198	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	34117943	rs367746502	TTTTTC	T	121.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	34118645	rs149798490	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.575;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr15	34118994	rs4041449	C	CAG	1630.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr15	34119327	rs2255311	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:78,58:0.43:136
chr15	34129357	rs7182398	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr15	34130739	rs73372074	C	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr15	34133130	rs3764232	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr15	34135826	rs2303868	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	34136971	rs7181900	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	34137292	rs12899715	C	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr15	34140735	rs2278314	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	34146783	rs2303308	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr15	34146886	rs713201	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	34146922	rs713203	C	T	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	34149785	rs9806577	C	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	34150120	rs139758855	GAGCCCACCCACTGCGGGGCC	G	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr15	34151668	rs7180084	G	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	34153489	rs115356649	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr15	34157436	rs143114117	C	CAAAG	2848.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:115,77:0.40:192
chr15	34168207	rs11295548	GA	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.078;QD=0.51;ReadPosRankSum=-0.317;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr15	34380216	rs377063587	TA	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.051;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr15	34394926	rs73374372	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr15	34437518	rs74010250	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr15	34437863	rs4780222	A	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	34441102	rs6495551	C	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	34520623	rs113312384	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr15	34520887	.	CTTTTTT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=1.282;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr15	34521253	rs7167503	A	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=-0.560;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	34521940	rs8033087	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=1.165;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr15	34528948	rs4577050	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr15	34537435	rs4371122	C	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	34537617	rs74010036	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr15	34543055	rs10851964	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr15	34543175	rs370477960	T	C	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr15	34543298	rs11382535	G	GA	843.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	34551082	rs7164902	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:101,65:0.39:166
chr15	34567471	rs347825	A	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.475;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr15	34610964	rs347867	G	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	34628570	rs347836	C	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	34634324	rs422388	C	G	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-1.467;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:99,95:0.49:194
chr15	34640054	rs150911418	AAAAAAT	A	877.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	34640218	rs374230	C	T	14829.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,557:1.00:557
chr15	34640378	rs430083	T	C	13451.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,526:1.00:526
chr15	34640959	rs371061	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	34643103	rs347796	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	34654339	rs10626628	T	TTCTCTC	2963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.465;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:168,98:0.37:266
chr15	34654718	rs2279686	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	34655092	rs2339434	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	34656524	rs6495665	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	34781238	rs2554765	G	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	34781272	rs3812939	A	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	34781807	rs8033870	T	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.21;QD=40.34;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	34781815	rs8028789	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.74;QD=41.96;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	34782482	rs113069012	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	34782508	rs12593353	A	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	35046816	rs2277558	T	A	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr15	35083378	rs2307493	A	G	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:177,150:0.46:327
chr15	35083508	.	TCACACACA	T	608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.487;QD=16.91;ReadPosRankSum=0.125;SOR=1.821;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr15	35086763	rs78848103	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	35149008	rs8035240	C	T	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	35149313	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.327;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr15	35174666	.	T	TAA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.92;ReadPosRankSum=0.409;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	35185808	.	GCACA	G	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr15	35185816	rs374425052	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.665;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	35198879	rs80093103	G	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:122,96:0.44:218
chr15	35207397	rs2044920	C	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.495;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr15	35207410	rs370486508	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.11;ReadPosRankSum=0.849;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	35219164	rs79873270	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr15	35230934	rs10701045	A	ATAGT	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr15	35234130	rs16960140	T	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=1.073;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr15	35256624	rs9920529	C	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr15	35261952	rs7164070	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	35273620	rs4923849	C	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	35664406	rs141638132	TA	T	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	35703269	rs16960864	G	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	35814259	rs75967142	GA	G	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr15	35834547	rs1020307	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr15	36218920	rs5811877	AT	A	1060.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	36218923	rs71808099	AATT	A	1109.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	36218930	rs1532477	T	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	36218934	rs1532476	T	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=-0.092;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr15	36219168	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.691;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr15	36871957	rs3743337	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,40:0.40:100
chr15	36906129	rs7163791	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:119,60:0.34:179
chr15	36906211	rs7163988	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:68,22:0.24:90
chr15	36937405	rs11073191	G	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	36937606	rs11073192	A	C	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	36946153	rs10220771	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,57:0.34:167
chr15	36946176	rs62002320	A	G	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr15	36946441	rs10220785	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	36949952	rs6495863	T	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	36984409	rs3743338	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:189,63:0.25:252
chr15	36989329	rs35110312	TA	T	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.674;QD=4.17;ReadPosRankSum=-0.521;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr15	36989469	rs2381887	G	A	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	37026565	rs1037439	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=25.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	37026600	rs3045912	AT	A	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=1.935;QD=7.12;ReadPosRankSum=-1.430;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr15	37110637	rs1194621	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr15	37168502	rs10518914	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr15	37168693	rs112117857	T	G	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.591;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:37,74:0.67:111
chr15	37173119	rs67033548	A	AT	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:122,37:0.23:159
chr15	37173147	rs12909623	T	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.842;QD=2.79;ReadPosRankSum=0.148;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:154,46:0.23:200
chr15	37173267	rs12903788	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.929;QD=2.43;ReadPosRankSum=0.025;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:184,50:0.21:234
chr15	37173379	rs16964235	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	37187197	rs61146116	A	AT	108.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	37242440	rs11293336	GA	G	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.237;QD=5.92;ReadPosRankSum=-0.101;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:48,59:0.55:107
chr15	37387971	rs3751544	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr15	37391752	.	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.129;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr15	37391845	rs140248890	A	AT	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	38230444	rs111775218	AC	A	1257.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chr15	38230565	rs59125264	TG	T	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	38233869	rs2937991	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr15	38258772	rs2959336	A	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.896;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:99,46:0.32:145
chr15	38545461	rs189604029	A	G	3127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=2.090;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:477,206:0.30:683
chr15	38545542	rs114764534	C	G	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.662;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:281,117:0.29:398
chr15	38590722	rs8040553	T	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	38590771	rs8036280	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr15	38590854	rs8034630	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.772;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr15	38614525	rs7182445	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-2.713;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:118,38:0.24:156
chr15	38617115	rs1879937	C	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	38631840	rs7163339	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.253;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr15	38631930	rs7180446	C	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:137,48:0.26:185
chr15	38632148	rs7181472	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	38641773	rs61670754	G	GTT	331.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.159;SOR=1.500;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr15	38641774	rs34352434	A	AAAT	331.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.019;SOR=1.500;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr15	38641777	rs59928364	G	GTA	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.077;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr15	38643574	rs3751526	T	C	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:233,93:0.29:326
chr15	38746474	rs371291990	C	T	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:97,170:0.64:267
chr15	38762701	rs7162389	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	38776330	rs61409403	T	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	38776806	rs201831942	AGGTGGTGGT	A	3682.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:107,98:0.48:205
chr15	38791348	rs7173225	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:160,91:0.36:251
chr15	38798246	rs4465567	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	38804020	rs11413668	T	TA	458.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr15	38804104	rs6495977	C	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	38988760	rs7171233	T	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.321;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr15	38988815	rs7165988	C	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-2.114;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:64,25:0.28:89
chr15	38990769	rs7172816	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	39876062	rs3830465	C	CAT	1494.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr15	39876412	rs7170682	C	T	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:104,161:0.61:265
chr15	39879517	rs2664141	C	T	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:116,220:0.65:336
chr15	39880358	rs2228261	C	T	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:107,208:0.66:315
chr15	39880822	rs2292305	A	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr15	39886430	rs61432611	T	A	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:53,124:0.70:177
chr15	39893046	rs73391256	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr15	39910431	rs10152640	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	40005793	.	G	GA	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.038;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:99,41:0.29:140
chr15	40018780	rs73395259	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-0.949;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr15	40030440	rs1906163	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:14,77:0.85:91
chr15	40031715	rs8033687	C	T	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	40031970	rs148586423	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr15	40056232	rs199579137	A	AT	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr15	40226495	rs566792	T	C	10322.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr15	40248122	rs8030025	G	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	40254155	rs510949	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	40259519	rs33911018	C	CT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.928;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr15	40265799	rs2307105	A	G	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	40269052	rs34298786	G	A	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr15	40269102	rs149792847	A	AT	2787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.186;QD=19.63;ReadPosRankSum=1.649;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:6,136:0.96:142
chr15	40270214	rs7174071	A	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	40282625	rs4144472	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr15	40284523	rs7178419	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,24:0.30:79
chr15	40285120	rs11633992	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr15	40291140	rs2412457	C	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	40293036	rs72248603	AAAT	A	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr15	40299016	rs2291623	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	40300092	rs2279581	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	40300214	rs2279580	G	C	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:116,250:0.68:366
chr15	40300443	rs2279579	T	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr15	40313083	rs12916520	G	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	40313141	rs3207297	C	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr15	40314967	rs8030856	C	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	40322552	rs2250402	G	T	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	40324481	rs4432245	T	C	5247.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:104,245:0.70:349
chr15	40324607	rs56105285	T	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr15	40324837	rs2291621	C	T	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	40327290	rs4594236	A	G	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,55:0.80:69
chr15	40327301	rs2898985	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,56:0.85:66
chr15	40328575	rs7535	G	C	14117.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr15	40328665	rs8208	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.031;QD=3.90;ReadPosRankSum=-0.390;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:215,75:0.26:290
chr15	40329033	rs2291619	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	40330564	rs7321	C	T	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	40330629	rs8041057	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:170,65:0.28:235
chr15	40330693	rs937215	C	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	40397936	rs539846	G	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-1.480;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr15	40462228	rs16970425	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr15	40462915	rs200649885	A	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	40477831	rs1801376	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,83:0.67:123
chr15	40488857	rs1017842	G	C	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:49,151:0.76:200
chr15	40494952	rs2412482	A	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr15	40500986	rs11630664	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-1.723;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:29,46:0.61:75
chr15	40556685	rs7162809	A	G	11207.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr15	40556713	rs12902461	T	C	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr15	40558064	rs2412504	A	G	8959.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:165,403:0.71:568
chr15	40558482	rs3743135	A	G	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:96,179:0.65:275
chr15	40558744	rs748556	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:112,76:0.40:188
chr15	40564576	rs3743137	C	T	17953.77	.	AC=1;AF=0.500;AN=2;DB;DP=1173;set=Intersection	GT:AD:AF:DP	0/1:334,823:0.71:1157
chr15	40565055	rs2253603	G	A	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:265,159:0.38:424
chr15	40573675	rs12440450	G	T	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=-0.180;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:9,38:0.81:47
chr15	40573716	rs4924446	A	G	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	40582128	rs71927133	AAGAGAGAGAGAGAGAGAGAG	AAGAGAG,AAG,A	1866.73	.	AC=1,0,0;AF=0.500,0.00,0.00;AN=2;DB;DP=139;set=Intersection	GT:AF:DP	0/1:0.88:67
chr15	40582161	.	A	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.295;QD=2.35;ReadPosRankSum=3.062;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr15	40582163	rs62021885	A	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-2.705;QD=4.93;ReadPosRankSum=4.175;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr15	40582165	rs62021886	A	T	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.322;QD=15.22;ReadPosRankSum=4.774;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:46,52:0.53:98
chr15	40582167	rs62021887	A	T	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.712;QD=28.79;ReadPosRankSum=2.512;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:17,64:0.79:81
chr15	40582169	rs8036867	A	T	5905.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.340;QD=40.18;ReadPosRankSum=1.195;SOR=0.602;set=HC	GT:AD:AF:DP	1/1:6,141:0.96:147
chr15	40582713	rs34370826	TAG	T	804.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr15	40583093	rs2412506	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	40583458	rs936209	A	G	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	40583560	rs62021888	G	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:178,64:0.26:242
chr15	40583876	rs9972418	T	G	11300.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr15	40589002	rs2229691	A	G	9743.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:209,439:0.68:648
chr15	40589830	rs2305649	G	A	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:85,248:0.74:333
chr15	40590134	rs2229690	G	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr15	40590265	rs2305648	C	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:130,56:0.30:186
chr15	40593939	rs2305647	C	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	40595414	rs1869902	G	C	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	40595565	rs2305645	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.057;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:131,50:0.28:181
chr15	40595627	rs1869901	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr15	40627777	rs113207463	G	A	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:37,105:0.74:142
chr15	40646520	rs71132169	CT	C	2140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.982;QD=12.23;ReadPosRankSum=1.449;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:56,119:0.68:175
chr15	40648365	.	ACCATGGTCCAGGGCCCTGCGGGCCACCCCCTGG	A	2164.73	.	AC=1;AF=0.500;AN=2;DP=308;set=Intersection	GT:AD:AF:DP	0/1:175,86:0.33:261
chr15	40650437	.	GCCGCCGCTGCCGCCGCCA	G	1366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=2.734;QD=23.98;ReadPosRankSum=0.673;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr15	40655845	rs1898883	C	G	10321.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:207,473:0.70:680
chr15	40655873	rs1898882	G	C	11244.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:206,512:0.71:718
chr15	40683780	rs2289332	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,107:0.61:174
chr15	40684387	rs10681422	G	GTT	88	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	40699727	rs80175544	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr15	40699940	rs2289331	T	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:9,62:0.87:71
chr15	40700006	rs3214685	G	GTT	740.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr15	40700070	rs76137091	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr15	40700120	rs78272986	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr15	40703339	rs8034416	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.589;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr15	40703609	rs4924466	A	G	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	40705105	rs2289330	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr15	40705352	rs73385108	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	40708357	rs371770434	C	T	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:239,101:0.30:340
chr15	40708422	rs11070270	A	G	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:79,146:0.65:225
chr15	40716408	rs28429209	C	A	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.016;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:264,110:0.29:374
chr15	40751555	rs3803357	C	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=1.010;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:309,149:0.33:458
chr15	40752047	.	G	T	1366.77	.	AC=1;AF=0.500;AN=2;DP=351;set=Intersection	GT:AD:AF:DP	0/1:250,93:0.27:343
chr15	40764549	rs582736	G	A	12991.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr15	40849326	rs76717634	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.960;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr15	40862079	rs2959540	G	C	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:84,204:0.71:288
chr15	40898643	rs7177192	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	40900943	rs35446763	CA	C	54.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=1.501;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr15	40902490	rs79413475	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr15	40903101	.	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-4.215;QD=3.34;ReadPosRankSum=1.031;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr15	40903109	.	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-4.017;QD=4.08;ReadPosRankSum=1.551;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr15	40903684	rs12911738	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40907698	rs11427985	T	TG	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=35.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	40913840	rs2412541	G	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	40914177	rs11858113	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	40914772	rs11855334	C	T	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr15	40915045	rs8041534	T	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	40915190	rs8040502	A	G	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	40915894	rs11070285	T	C	11030.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr15	40921693	.	CTTTTTTTTTTTT	C	99.14	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.32;QD=33.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	40937727	rs6492959	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	40939448	rs8041095	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=2.200;QD=14.20;ReadPosRankSum=1.025;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	40947023	rs10444817	C	T	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	40949526	rs2412544	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	40998302	rs55943660	TA	T	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr15	41001187	rs45455000	T	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr15	41021094	rs7183120	C	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,54:0.76:71
chr15	41029692	rs59558714	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	41030609	rs114812520	G	C	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,73:0.74:98
chr15	41032512	rs115136102	G	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr15	41063244	rs1866170	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr15	41066355	rs113226309	G	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr15	41071867	.	C	CA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.178;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr15	41099899	rs142730574	T	TGGGGC	1902.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr15	41100332	.	T	TAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCGC	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=13.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-4.691;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr15	41101145	rs3743034	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr15	41104771	rs141515751	GAAAGAAAGAAAGAAAGAA	G	564.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.46;MQRankSum=0.474;QD=22.59;ReadPosRankSum=2.043;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr15	41104783	.	GAAAGAA	G	209.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.46;MQRankSum=-0.406;QD=8.39;ReadPosRankSum=-0.963;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	41104817	rs35853942	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr15	41104874	rs17657877	G	C	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:58,127:0.69:185
chr15	41105926	rs690347	T	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	41106096	rs116417086	C	T	5978.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:114,272:0.70:386
chr15	41106485	rs7915	A	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.035;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr15	41108010	rs77318894	C	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr15	41109371	rs12148058	G	T	219.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-0.213;QD=16.85;ReadPosRankSum=-0.472;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr15	41146581	rs3736287	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr15	41146880	rs8028552	T	C	5082.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:98,239:0.71:337
chr15	41148085	rs658752	C	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:107,180:0.63:287
chr15	41148163	rs690136	C	T	7312.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:203,347:0.63:550
chr15	41148199	rs659232	C	T	12248.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr15	41149161	rs690458	G	C	13839.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr15	41165739	rs1814692	A	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:204,80:0.28:284
chr15	41186906	rs3215043	CG	C	1527.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr15	41188024	rs3743036	G	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr15	41188287	rs694213	A	G	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:58,85:0.59:143
chr15	41190989	rs686038	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr15	41192558	rs595559	T	C	8569.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:110,384:0.78:494
chr15	41193274	rs9806730	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	41193316	rs9806683	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr15	41222025	rs3212277	C	T	6576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.458;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:178,311:0.64:489
chr15	41224124	rs3212278	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	41227396	.	AGC	A	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=5.311;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.416;QD=7.47;ReadPosRankSum=-0.806;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr15	41246237	rs3033592	A	ATC	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	41275400	rs75164271	A	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-0.464;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	41275400	.	AG	TC	81	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=24;MQ=60.0;NF=0;NR=3;PP=81;QD=44.8226249541;SC=ACCCATGAGGAGGTCTATGTC;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=3;WE=41275409;WS=41275390;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	41275401	rs77520362	G	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-0.464;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	41279933	rs5812179	TA	T	636.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr15	41315591	rs72527311	A	AAT	2642.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	41346092	rs2899010	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr15	41350750	.	TGTGTGTGTGTGTGTGTGC	T	204	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=3;MGOF=11;MMLQ=24;MQ=60.01;NF=1;NR=9;PP=204;QD=21.2;SC=TATACAAGTCTGTGTGTGTGT;SbPval=0.89;Source=Platypus;TC=19;TCF=4;TCR=15;TR=10;WE=41350781;WS=41350740;set=Platypus	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	41350768	rs67053863	CGT	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.676;QD=10.76;ReadPosRankSum=0.803;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr15	41373029	rs1983400	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	41476101	rs521088	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	41476209	rs522063	T	C	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	41476465	rs690733	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:94,157:0.63:251
chr15	41476875	rs2467297	T	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	41483631	rs11371504	T	TA	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	41483636	rs2412609	C	T	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	41483682	rs1971131	A	G	2940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-2.530;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:39,133:0.77:172
chr15	41483787	.	TG	T	1795.73	.	AC=1;AF=0.500;AN=2;DP=302;set=Intersection	GT:AD:AF:DP	0/1:217,79:0.27:296
chr15	41487861	rs33987701	C	CA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=-0.385;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr15	41507865	rs113857856	T	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr15	41507883	rs113812559	C	CA	1547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.014;QD=11.46;ReadPosRankSum=-0.651;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:36,99:0.73:135
chr15	41509288	rs7173086	T	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr15	41555249	rs7175912	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	41624224	rs10518718	G	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr15	41624579	rs35123814	C	G	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:356,129:0.27:485
chr15	41624622	rs74012264	C	T	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.051;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:473,182:0.28:655
chr15	41634587	rs7178634	A	G	3165.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	41634588	rs7178777	C	A	3165.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	41641432	rs36124939	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:143,45:0.24:188
chr15	41663896	rs13379756	A	C	2469.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.607;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.225;QD=27.44;ReadPosRankSum=-1.646;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr15	41679717	rs73407109	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:44,83:0.65:127
chr15	41688700	rs34979001	T	C	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.850;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:213,72:0.25:285
chr15	41750096	rs11313160	TC	T	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	41762631	rs74012295	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:115,51:0.31:166
chr15	41766966	rs167581	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	41770608	.	T	TA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.737;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr15	41772623	rs7171744	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr15	41786173	rs190590881	G	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	41795900	rs316617	T	C	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr15	41797573	rs35233496	T	TG	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.217;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr15	41799079	rs316622	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	41803914	rs2254078	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	41805115	rs2253936	G	A	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr15	41814172	rs2289740	G	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	41814880	.	G	GC	1287.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,38:0.30:127
chr15	41814884	.	A	G	1290.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:91,38:0.29:129
chr15	41815516	rs8027526	G	C	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	41816190	rs2297378	T	G	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr15	41817367	rs2274858	A	G	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	41819283	rs2297379	G	A	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	41819716	rs1200345	C	T	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	41821752	rs1200349	T	C	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	41821905	rs74014604	G	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr15	41822323	rs11632399	C	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	41827243	rs7181115	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	41828571	rs2297383	A	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	41829243	rs59729881	G	T	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.388;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:314,88:0.22:402
chr15	41829374	rs59910135	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr15	41851414	rs148149251	T	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	41851709	rs113721358	A	G	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	41856543	rs11070339	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	41857303	rs2277536	T	C	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr15	41860698	rs2289743	C	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	41962213	rs61510600	G	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	41988194	rs200699108	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.232;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr15	42026764	rs1918314	C	T	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr15	42028354	rs2577960	C	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	42032383	rs17677991	C	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	42046568	rs2695164	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	42057370	rs16972058	T	C	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	42059521	rs2605570	A	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	42109223	rs1197689	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	42109975	rs2303518	T	G	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr15	42111745	.	C	CGGG	795.73	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.47;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr15	42114414	rs2303517	C	T	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	42114623	rs74014621	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	42115426	rs1197688	A	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	42120437	rs13380315	C	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	42127443	rs2241523	G	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	42127918	rs11070350	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr15	42128855	rs7166139	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	42129168	rs7165230	A	T	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	42129176	rs890504	T	C	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	42129373	rs11547012	C	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	42131965	rs57498313	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	42132200	rs2077543	C	G	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	42140998	rs4078788	C	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	42143007	rs55787139	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	42143145	rs58422701	C	CCA	27755.73	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr15	42143442	rs58030013	G	T	17076.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr15	42143533	rs1197665	T	G	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr15	42144332	rs1197662	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	42144967	.	T	TG	4205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.954;QD=15.81;ReadPosRankSum=2.037;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:62,204:0.77:266
chr15	42147206	rs1648826	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	42147663	rs1672467	G	C	8453.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr15	42156321	rs1197657	T	C	375.84	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr15	42162157	rs8034735	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	42170499	rs1201690	T	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=2.071;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	42170506	rs747780	C	T	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=1.797;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	42171537	rs1197683	A	G	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	42171877	rs1197685	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	42175104	rs1197691	G	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42175507	rs1197692	T	C	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr15	42178155	rs1210795	T	C	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr15	42185439	rs1672459	C	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	42187661	rs1704380	T	C	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	42246148	rs66986514	GGAA	G	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,24:0.29:82
chr15	42281719	rs1668579	G	A	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.778;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:258,121:0.32:379
chr15	42281805	rs1704352	C	T	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.148;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:119,44:0.27:163
chr15	42282368	rs74010937	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.037;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr15	42287578	rs1668586	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:143,67:0.32:210
chr15	42289522	rs1704357	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr15	42289614	rs182069164	G	A	57.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.45;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	42292532	rs1668557	T	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	42297092	rs2598464	G	A	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.535;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:178,79:0.31:257
chr15	42298133	rs1704366	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42298317	rs189566576	G	A	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:68,107:0.61:175
chr15	42302330	.	G	GCC	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=11.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.092;SOR=2.941;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr15	42302338	rs28736629	A	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=29.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.605;SOR=3.054;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr15	42302433	rs9920802	A	G	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.241;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:92,110:0.54:202
chr15	42302437	rs9920824	G	C	3997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.182;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.19;ReadPosRankSum=0.030;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:88,110:0.56:198
chr15	42302590	rs1668568	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	42305769	rs75965569	G	A	1186.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	42305770	rs76383211	C	T	1186.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42305773	rs62004282	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	42305777	rs1668566	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.934;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr15	42305852	rs10625152	A	AGAG	4856.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	42305998	rs1668565	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	42306015	rs1668564	G	A	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	42311454	rs2724935	T	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42313242	rs145792224	C	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:68,135:0.67:203
chr15	42342818	rs1668545	G	A	3126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.464;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:37,84:0.69:121
chr15	42342824	rs1668546	T	G	2902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.39;ReadPosRankSum=1.768;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:38,72:0.65:110
chr15	42363769	rs1668589	A	G	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	42364329	rs1712401	A	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42364362	rs1668588	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	42374125	.	CT	C	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.369;QD=4.20;ReadPosRankSum=-0.526;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:58,69:0.54:127
chr15	42377744	rs605253	C	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	42378384	rs776728	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42433382	rs694456	A	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.657;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:174,62:0.26:236
chr15	42433802	rs2280248	A	G	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:46,118:0.72:164
chr15	42434254	rs655427	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr15	42434273	rs143445521	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:99,38:0.28:137
chr15	42434505	rs654527	C	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	42434837	rs1356410	T	C	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:110,326:0.75:436
chr15	42436599	rs636535	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	42436817	rs148007024	G	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr15	42437711	rs621560	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.903;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr15	42439376	rs4923929	G	A	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	42439874	rs79092213	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:73,109:0.60:182
chr15	42442741	rs73403545	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:106,175:0.62:281
chr15	42445654	rs1703754	A	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr15	42445724	rs624841	C	G	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr15	42445797	rs115750855	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:62,112:0.64:174
chr15	42445987	rs1624183	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr15	42446208	rs678778	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr15	42454464	rs588695	A	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr15	42454701	rs1712390	T	C	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:41,112:0.73:153
chr15	42458347	rs663454	T	C	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:67,116:0.63:183
chr15	42459034	rs1619030	T	C	5036.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:106,229:0.68:335
chr15	42479406	rs613131	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr15	42480150	rs609660	C	A	747.41	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:4,33:0.89:37
chr15	42483455	rs635919	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr15	42483769	rs647581	C	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-0.917;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr15	42483779	rs660033	C	T	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-2.603;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr15	42492180	rs201345228	A	AAAAC	1681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.618;QD=28.03;ReadPosRankSum=0.024;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr15	42492185	.	C	CAA	1658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.618;QD=27.65;ReadPosRankSum=-0.371;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr15	42492191	.	C	CA	1574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.659;QD=28.63;ReadPosRankSum=0.171;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr15	42503953	rs367909084	GA	G	1021.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr15	42519136	rs1678988	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr15	42519799	.	A	G	182.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr15	42520760	rs1678987	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.042;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr15	42520829	rs1712417	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	42523341	rs56119841	T	TC	7423.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	42524065	rs1630294	T	C	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.815;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:128,41:0.24:169
chr15	42524165	rs1712420	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.485;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr15	42525588	.	T	C	932.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr15	42529892	rs66512609	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.623;QD=4.04;ReadPosRankSum=1.198;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr15	42553218	rs5812215	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-0.280;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr15	42560312	rs2412681	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr15	42564369	rs4244587	CA	TG	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr15	42564902	rs7181758	A	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42568547	rs8043515	C	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	42568630	rs8023678	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.736;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr15	42570113	.	GAAAAAAA	G,GAAAA	295.80	.	AC=1,0;AF=0.500,0.00;AN=2;DP=13;set=Intersection	GT:AF:DP	0/1:0.89:9
chr15	42570201	rs12916523	A	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.604;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr15	42570718	rs8024732	A	G	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.086;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:290,105:0.27:395
chr15	42573067	rs8037020	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=0.484;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	42575963	rs2412689	A	G	9239.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr15	42579822	rs11070371	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42579948	rs8037627	T	C	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.330;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:240,88:0.27:328
chr15	42580106	rs8036596	A	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr15	42584909	rs4923939	C	T	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr15	42589928	.	T	A	771.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr15	42589987	rs4924651	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.475;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr15	42589996	rs4924652	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.14;ReadPosRankSum=0.691;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr15	42600227	rs114866035	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr15	42600459	rs150417087	T	A	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:64,126:0.66:190
chr15	42603083	rs2412694	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,41:0.32:129
chr15	42606094	rs7173358	A	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.681;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr15	42606153	rs141877658	A	AAACAACAACAAC	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.339;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:69,13:0.16:82
chr15	42606161	rs11637731	G	A	2590.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=1.480;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:4,93:0.96:97
chr15	42613926	rs80071462	A	C	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:22,81:0.79:103
chr15	42614205	rs61752494	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:53,93:0.64:146
chr15	42619508	rs1659215	C	T	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	42622968	rs71108160	CTT	C	237.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=16.580;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=0.307;SOR=4.800;set=HC	GT:AD:AF:DP	1/1:5,14:0.74:19
chr15	42632799	.	T	TA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.57;ReadPosRankSum=1.036;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	42643529	rs7181742	T	C	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr15	42678518	rs28364399	G	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:31,88:0.74:119
chr15	42680058	rs17593	T	C	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:56,135:0.71:191
chr15	42681199	rs1801449	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	42684680	rs12324205	C	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr15	42691664	rs3743003	C	G	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:85,141:0.62:226
chr15	42694466	rs28364491	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr15	42694944	rs2241827	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	42696158	rs7163986	A	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	42696238	rs111814065	C	CAGAG	1278.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr15	42696606	rs28364500	G	T	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:55,167:0.75:222
chr15	42698065	rs28364508	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:36,68:0.65:104
chr15	42698284	rs28364509	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr15	42700552	rs2289293	G	A	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:64,165:0.72:229
chr15	42701688	rs3115883	T	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	42703150	rs115311625	G	A	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:124,244:0.66:368
chr15	42703353	rs28364540	G	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	42703371	rs28364541	C	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr15	42703406	rs3115884	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr15	42703612	rs28364544	C	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:34,98:0.74:132
chr15	42703870	rs184526584	C	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr15	42703886	.	CGGGG	C	1910.73	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr15	42703898	.	G	T	2151.77	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr15	42704105	rs3098423	C	T	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	42707703	rs148042984	A	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:79,132:0.63:211
chr15	42709485	rs116220592	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr15	42710219	rs61071861	G	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr15	42713462	rs62022303	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr15	42714195	.	G	GA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.529;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:89,32:0.26:121
chr15	42714819	.	CTA	C	1829.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr15	42720475	rs115393304	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr15	42742435	rs34792942	T	C	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:79,195:0.71:274
chr15	42758159	rs2244773	T	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	42764519	rs7177521	G	C	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.31;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr15	42803896	rs143354289	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.997;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr15	42820589	rs1060291	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr15	42837498	rs1060293	T	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr15	42839434	rs142112921	G	GA	176.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr15	42840220	rs145859865	C	CA	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-1.997;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr15	42850380	rs3986280	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	42851703	rs73406531	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.469;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	42858891	rs1044866	C	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.043;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr15	42877863	rs73406562	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.564;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.217;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr15	42930891	rs1197550	A	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.617;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr15	42954888	rs7166373	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	42955967	rs938047	A	G	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:98,183:0.65:281
chr15	42957373	rs8039765	C	A	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:64,113:0.64:177
chr15	42957532	rs8024902	T	G	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr15	42966288	rs35738819	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr15	42977526	rs6493059	A	C	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:129,239:0.65:368
chr15	42977676	rs6493060	G	A	15668.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:1,645:1.00:646
chr15	42979461	rs16957052	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:107,55:0.34:162
chr15	42981022	rs28744617	A	G	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:98,229:0.70:327
chr15	42981806	rs8030587	G	A	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	42982340	rs8031218	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr15	42983923	rs3742993	A	G	5729.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:130,261:0.67:391
chr15	42985696	.	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.227;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:207,60:0.22:267
chr15	42986552	rs78906041	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:155,58:0.27:213
chr15	43011537	rs9919994	G	T	292.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr15	43017426	rs16957091	T	G	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr15	43017913	rs114413530	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=2.479;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr15	43017919	rs6493062	G	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	43018486	rs2305085	G	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr15	43018691	rs2305084	T	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:4,79:0.95:83
chr15	43020954	rs61745640	C	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:235,76:0.24:311
chr15	43020983	rs8023524	G	A	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr15	43021143	rs148040924	CCTT	C	5372.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:42,133:0.76:175
chr15	43021523	rs114208791	G	A	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:259,104:0.29:363
chr15	43021563	rs12905385	G	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:77,156:0.67:233
chr15	43021628	rs16957104	C	T	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	43021986	rs12594483	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	43022690	rs7174041	C	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	43022776	rs75993383	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-1.402;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:124,49:0.28:173
chr15	43023161	rs61747153	C	T	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:81,143:0.64:224
chr15	43023162	rs61742992	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:144,83:0.37:227
chr15	43023482	rs12917189	T	C	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	43024063	rs12917018	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	43025174	rs8027427	T	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	43025209	rs11448523	A	AG	1813.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=38.59;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	43025476	rs34650750	C	CT	1507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.533;QD=5.65;ReadPosRankSum=-0.045;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:153,114:0.43:267
chr15	43025524	rs28549876	T	G	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	43027606	rs80105262	G	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.644;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:91,47:0.34:138
chr15	43028592	rs7167392	G	A	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:78,148:0.65:226
chr15	43028749	rs4265781	T	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	43029066	rs75649060	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr15	43038059	rs74398902	G	A	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:95,32:0.25:127
chr15	43075531	rs9920092	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	43086737	rs16957167	G	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr15	43090520	rs16957168	C	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:43,100:0.70:143
chr15	43093598	rs112227306	C	T	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.421;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:128,54:0.30:182
chr15	43094348	rs145359031	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr15	43103765	rs8032994	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	43109143	rs7183673	T	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-0.862;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr15	43109213	rs115190236	C	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.518;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:93,27:0.23:120
chr15	43109385	rs7182753	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	43109451	rs144596593	TAG	T	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	43120304	rs115737553	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	43132840	rs8039438	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-0.685;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr15	43170690	rs10650948	T	TAC	1263.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr15	43170793	rs6493068	A	G	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.33;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr15	43237805	rs11352938	AT	A	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	43237813	rs67230215	TTCACCATTGA	T	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	43244699	rs2277532	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr15	43252764	rs3759792	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr15	43252969	rs114018630	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.618;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr15	43256121	rs2054389	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	43281141	rs149097306	C	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr15	43307839	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.091;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr15	43322113	rs3736054	C	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	43324942	rs6493077	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	43328663	rs3784265	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	43330175	rs7166596	A	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	43339597	rs115663043	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:76,26:0.25:102
chr15	43340573	rs372244257	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.283;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr15	43352041	rs4924704	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	43378118	.	CA	C	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.759;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr15	43427602	rs78451052	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr15	43478113	rs540587	G	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:127,184:0.59:311
chr15	43478170	rs79752141	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chr15	43483537	rs495286	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.97;QD=33.58;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	43483541	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=1.330;QD=5.90;ReadPosRankSum=0.728;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr15	43495325	rs114354377	G	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr15	43499758	rs76053012	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr15	43512847	rs3832982	AC	A	1927.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=12.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=2.106;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:66,90:0.58:156
chr15	43527236	rs579178	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	43531411	rs28756768	G	C	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:230,92:0.29:322
chr15	43545728	rs555001	G	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	43558823	rs473016	A	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	43571390	rs567357	C	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	43579566	rs513970	A	G	6239.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	43585520	rs538238	T	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	43621947	rs3742969	A	G	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr15	43627855	rs1549525	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr15	43632549	rs2278857	T	C	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	43635136	rs8041132	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	43637985	rs6493083	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	43639062	rs74621529	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	43654182	rs6493085	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	43656043	rs2899082	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	43659046	rs2278860	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	43661459	rs28461955	C	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	43661802	rs3809482	T	C	8630.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr15	43670226	rs3213990	C	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	43678543	rs4608311	G	A	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	43690215	rs999026	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	43691150	rs884704	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	43694108	rs2444036	G	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	43696168	rs3837679	A	AT	766.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	43700427	rs45585139	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	43707542	rs2254321	T	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	43720197	rs550239	C	T	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	43720533	rs2249952	G	C	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	43724646	rs2602141	T	G	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	43739686	rs72067439	G	GA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.340;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:52,27:0.34:79
chr15	43748304	rs690367	A	G	9022.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr15	43762196	rs689647	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	43767774	rs560191	G	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	43773234	rs376159158	G	C	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.781;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:266,95:0.26:361
chr15	43784000	rs555252	C	T	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	43784435	rs34075231	T	TA	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr15	43784475	rs2439831	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	43813387	rs694985	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	43816917	rs1060939	G	A	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	43817406	rs480108	T	C	15347.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr15	43818052	rs2245715	G	A	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.89;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr15	43819524	rs116121199	G	A	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.480;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:377,126:0.25:503
chr15	43873392	rs144369708	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.88;QD=26.63;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	43891235	rs56397895	G	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	43891512	rs76542740	C	T	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	43892847	rs12438025	G	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	43892893	rs12437957	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	43893072	rs3097773	G	A	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:5,365:0.99:370
chr15	43893818	rs2447196	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	43895642	rs28495368	GC	AT	12601.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr15	43896446	rs2614819	C	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr15	43896798	rs2614822	G	C	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	43897499	rs2920780	T	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.07;QD=25.72;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	43903224	.	G	GTGTGTGTGTGTGTC	1445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-0.154;QD=7.38;ReadPosRankSum=2.966;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:118,78:0.40:196
chr15	43924682	rs2920781	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	43925134	rs7169097	TT	AG	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=42.50;QD=43.92;SOR=5.943;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	43925140	rs7167634	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.43;QD=46.76;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	43925147	rs7169112	T	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.94;QD=45.54;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	43927623	rs375933133	CA	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=2.217;QD=0.52;ReadPosRankSum=0.086;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:250,72:0.22:322
chr15	43932103	rs12443102	G	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=26.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	43939642	rs8042868	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	43940299	rs146995350	CTTG	C	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-1.090;QD=6.67;ReadPosRankSum=0.267;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr15	43941125	rs2470122	G	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.07;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	43988604	rs28578041	G	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	43989518	rs2467426	A	G	12977.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.43;QD=25.20;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,515:1.00:515
chr15	43989530	rs2927085	T	C	13038.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=24.93;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr15	43991374	.	T	C	89	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=47.81;NF=0;NR=7;PP=89;QD=17.6816017925;SC=GGACCTGCCCTCGCATCCCCT;SbPval=1.0;Source=Platypus;TC=25;TCF=4;TCR=21;TR=7;WE=43991382;WS=43991364;set=Platypus	GT:AD:AF:DP	1/0:18,7:0.28:25
chr15	43995789	rs2470135	C	T	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.74;QD=26.61;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	43996898	rs139728513	G	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.25;QD=29.69;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	44001071	rs370956504	G	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.43;QD=28.63;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	44021501	rs151172008	G	C	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=0.533;QD=13.93;ReadPosRankSum=-1.723;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:42,87:0.67:129
chr15	44028569	rs56181031	G	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.47;QD=27.74;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	44043793	rs28718261	C	G	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	44053887	rs12101756	A	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	44058332	.	TAA	T	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.726;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr15	44060883	rs12441861	C	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	44060895	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.878;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:56,14:0.20:70
chr15	44062874	rs7181912	A	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	44068160	rs3844075	C	G	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	44069069	rs2277531	G	C	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr15	44084705	rs4644832	G	A	14087.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.43;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,533:1.00:533
chr15	44089222	rs2043878	C	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	44090798	rs3759791	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	44090854	rs654276	T	C	357.90	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	44091351	rs656473	A	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	44091386	rs3784275	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr15	44093927	rs12702	T	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	44100531	rs28674750	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.893;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr15	44102010	rs2228368	A	C	6022.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:135,290:0.68:425
chr15	44106624	rs3736180	A	G	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.910;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:30,108:0.78:138
chr15	44107382	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.533;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr15	44119313	rs3832984	CA	C	7677.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:103,235:0.70:338
chr15	44120559	rs678084	T	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	44127290	rs114482922	A	C	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=2.593;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:60,132:0.69:192
chr15	44127489	rs67611508	ACCCGCCC	A	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr15	44134922	rs8032649	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	44176103	rs8023508	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	44198049	rs2306674	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=3.632;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chr15	44211868	rs2016840	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.336;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr15	44211913	rs2016837	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.299;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr15	44216559	rs5812256	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=1.018;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr15	44599410	rs199591388	CT	C	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.382;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:63,35:0.36:98
chr15	44778936	rs2453275	T	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=25.62;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	44951174	rs7165146	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr15	44966175	rs58491010	C	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr15	44966389	rs8026845	T	C	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr15	44967847	rs77918503	A	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.888;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:189,84:0.31:273
chr15	45028919	rs11388295	C	CT	701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.836;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr15	45047134	rs2470911	G	A	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr15	45047573	rs3100139	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	45048757	rs3759881	T	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	45059390	rs6493127	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	45060014	rs3100143	A	T	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	45123909	.	TAA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.19;MQRankSum=-2.236;QD=1.62;ReadPosRankSum=-0.934;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr15	45127354	rs8037719	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	45127468	rs74009442	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:67,22:0.25:89
chr15	45127487	rs148476022	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr15	45142480	rs2948904	G	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-8.829;QD=2.69;ReadPosRankSum=-0.543;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr15	45142524	rs55833848	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:119,48:0.29:167
chr15	45142627	rs1288101	G	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-0.704;QD=2.88;ReadPosRankSum=0.384;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr15	45216830	rs16976561	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.416;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr15	45217012	rs57373865	G	T	112.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.14;ReadPosRankSum=-0.792;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr15	45250755	rs373082	CA	TG	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	45315287	rs111900946	T	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr15	45353046	rs113674470	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	45353230	rs2854446	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.292;QD=2.81;ReadPosRankSum=1.906;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:237,67:0.22:304
chr15	45353470	rs113331537	T	A	2607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-1.369;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:57,121:0.68:178
chr15	45360983	rs76647534	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.52;QD=22.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	45361180	rs55739437	A	T	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	45365683	rs142417981	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	45365696	rs147928721	C	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	45365724	rs76283634	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	45365730	rs140027593	G	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	45365762	rs78724098	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	45387899	rs16977579	T	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	45388395	rs73406323	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	45391455	rs56833067	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	45391566	rs269869	A	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	45398509	rs58361817	G	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	45398965	rs269862	G	T	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	45399467	rs190599	A	G	23618.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.624;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=26.36;ReadPosRankSum=0.325;SOR=0.135;set=HC	GT:AD:AF:DP	1/1:2,894:1.00:896
chr15	45404066	rs2001616	G	A	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr15	45404979	rs182090	T	G	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr15	45405463	rs269856	G	T	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	45415157	rs34734975	G	A	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	45427477	rs113882937	T	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	45437403	rs16939693	T	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	45439910	rs938129	A	G	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	45444133	rs16939752	T	C	9206.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr15	45444518	rs1706804	A	G	23141.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,899:1.00:899
chr15	45445691	.	AATGTGTGTGTGTGTGTGT	AGTGTGTGTGTGTGTGT,A,AGT	7324.73	.	AC=2,0,0;AF=1.00,0.00,0.00;AN=2;DP=228;set=Intersection	GT:AF:DP	1/1:1.00:222
chr15	45445728	.	GTGTGTGTGTGTGTGTGTA	G	294.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.860;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr15	45445730	.	GTGTGTGTGTGTGTGTA	G	900.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.507;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:35,42:0.55:77
chr15	45445746	.	A	G	860	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=211;MMLQ=27;MQ=59.79;NF=1;NR=52;PP=860;QD=16.8824757084;SC=GTGTGTGTGTATAATGGGGAG;SbPval=0.85;Source=Platypus;TC=54;TCF=2;TCR=52;TR=53;WE=45445754;WS=45445736;set=Platypus	GT:AD:AF:DP	1/1:1,53:0.98:54
chr15	45446084	rs11306605	CA	C	1145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.627;QD=11.34;ReadPosRankSum=0.432;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:18,83:0.82:101
chr15	45446156	rs2458236	C	T	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	45462736	rs8033431	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	45466095	rs8030947	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=25.41;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	45467540	rs1632144	C	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	45480178	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr15	45490894	rs140922044	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr15	45490974	rs16940558	C	T	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:110,264:0.71:374
chr15	45544319	rs2899376	T	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	45545378	rs17215668	GC	G	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr15	45545478	rs11854484	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:169,53:0.24:222
chr15	45554267	rs1060896	C	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:193,77:0.29:270
chr15	45556163	rs8023604	T	C	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:57,176:0.76:233
chr15	45556829	rs11631021	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	45557152	rs17215605	C	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr15	45557456	rs11632419	C	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr15	45557468	rs2271438	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,37:0.35:107
chr15	45561868	rs2413769	C	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	45562180	rs16941245	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr15	45654327	rs1145086	A	G	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	45657104	rs200176845	CTAT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.770;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr15	45661678	rs1288775	T	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	45669055	rs12437840	C	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr15	45669094	rs12437887	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr15	45670681	rs8024550	A	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:44,91:0.67:135
chr15	45694516	rs1346266	G	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	45694579	rs1820518	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:84,27:0.24:111
chr15	45694610	rs1365610	C	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.993;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:156,65:0.29:221
chr15	45694768	rs1834686	G	T	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:101,177:0.64:278
chr15	45694983	rs1153850	G	C	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:62,139:0.69:201
chr15	45695341	rs2467852	C	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr15	45695382	rs7182723	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr15	45695612	rs1346265	C	T	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:68,146:0.68:214
chr15	45695695	rs1153849	G	A	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	45695830	rs3833012	GT	G	664.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:93,30:0.24:123
chr15	45695874	rs1153848	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr15	45706739	rs12440038	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr15	45709692	rs2486289	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr15	45723125	rs1629849	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	45723128	rs1629871	T	C	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	45724130	rs1547489	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	45724161	rs1547490	C	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	45725139	rs2467874	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	45740904	rs79766635	A	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	45741040	rs113052027	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	45777344	rs1153829	T	C	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	45779810	rs2453531	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	45813087	rs7173046	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	45814306	rs61756712	A	G	11759.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr15	45847921	rs8042811	T	C	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	45880122	rs16945097	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	45884522	rs112632969	G	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.907;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr15	45884526	rs719018	C	T	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	45890041	rs73420438	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	45894371	rs111301710	G	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	45895428	rs142847932	TAGCAATAGCTAAGACTTAGCTA	T	359.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	45897771	.	GT	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=1.159;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	45898535	rs78233984	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr15	45898883	rs60561729	A	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	45898900	rs58509170	T	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr15	45951064	rs16946633	T	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr15	45951409	rs55658411	A	T	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.120;QD=11.81;ReadPosRankSum=0.843;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr15	45951413	rs56364627	T	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.260;QD=11.60;ReadPosRankSum=2.399;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr15	45968535	rs12914266	A	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	45981117	rs2304897	C	T	230.31	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr15	47873773	rs8039513	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	48052595	rs1866501	A	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:72,154:0.68:226
chr15	48053229	rs501916	C	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:199,62:0.24:261
chr15	48053334	rs599111	G	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:286,104:0.27:390
chr15	48053730	rs9920019	A	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr15	48056219	rs3743279	A	G	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,92:0.72:127
chr15	48056549	rs567456	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr15	48056735	rs565627	A	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr15	48058071	rs532598	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:112,44:0.28:156
chr15	48058484	rs528882	G	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr15	48059401	rs141292920	G	A	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.485;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:166,63:0.28:229
chr15	48063076	rs568215	T	C	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	48426484	rs1426654	A	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:4,255:0.98:259
chr15	48433494	rs2470102	A	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	48441554	rs36075490	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:113,65:0.37:178
chr15	48443699	rs2470103	T	C	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr15	48450257	rs77618450	A	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr15	48450517	rs3736482	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr15	48450982	rs142693670	T	C	1866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.030;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:286,116:0.29:402
chr15	48460786	rs11070626	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr15	48460927	rs8023906	C	T	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr15	48483996	.	G	A	1483.77	.	AC=1;AF=0.500;AN=2;DP=300;set=Intersection	GT:AD:AF:DP	0/1:203,94:0.32:297
chr15	48484073	rs149211391	G	GT	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,48:0.71:68
chr15	48493602	rs183938277	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:180,76:0.30:256
chr15	48499987	rs35342218	G	A	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:186,85:0.31:271
chr15	48500393	rs75261692	C	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:56,74:0.57:130
chr15	48520699	rs1484547	T	C	142.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr15	48529069	rs73404514	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,13:0.23:57
chr15	48538979	rs35669481	A	AAAC	1014.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	48539026	rs11636073	A	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr15	48539043	rs8028035	G	A	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	48539129	rs138588696	C	T	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:87,158:0.64:245
chr15	48539587	rs6493311	T	C	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr15	48547976	rs2291340	T	C	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:3,210:0.99:213
chr15	48561834	rs1484551	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	48580573	rs12442530	A	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	48580713	rs1552311	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	48584083	rs2291342	A	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	48591267	rs35405890	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	48593699	.	T	TGCGG	532.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.34;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	48623500	rs12592155	C	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	48623524	rs12592157	C	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	48713996	rs1820488	G	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	48717681	rs140178192	G	A	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:61,125:0.67:186
chr15	48720526	rs363832	G	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr15	48729556	rs374705586	T	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:109,54:0.33:163
chr15	48729648	rs2042746	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	48736684	rs2303502	A	T	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:79,166:0.68:245
chr15	48749040	rs112092957	C	CGT	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=1.686;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr15	48755168	rs9806595	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=1.735;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr15	48764655	rs67860867	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.862;QD=2.55;ReadPosRankSum=0.909;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr15	48773785	rs371274267	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr15	48779200	rs72132658	AATAAC	A	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	48779231	rs72158035	GTAAAA	G	3037.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.68;QD=41.05;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	48779402	rs11853943	C	T	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr15	48789634	rs140605	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	48795877	rs16961033	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr15	48797307	rs25458	A	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:56,117:0.68:173
chr15	48797424	rs8037304	C	A	452.18	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr15	48805637	rs2306352	G	A	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	48807637	rs4775765	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	48813107	rs2413907	G	T	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:33,93:0.74:126
chr15	48818262	.	T	TA	474.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:84,22:0.21:106
chr15	48826421	rs72041020	CAG	C	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.514;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr15	48826455	rs57512865	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr15	48888455	rs61323481	C	T	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:68,151:0.69:219
chr15	48903126	rs1018148	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	48936811	rs25398	C	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:258,125:0.33:383
chr15	49040864	rs34352957	TA	T	149.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.48;ReadPosRankSum=1.150;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	49044538	rs2306187	C	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	49054952	rs73400358	C	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	49059673	rs9302144	C	T	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	49074539	rs2289179	C	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	49083577	rs58156069	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.565;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:116,38:0.25:154
chr15	49097733	rs34518970	T	TC	45	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.00;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	49098016	rs1426200	C	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	49118087	rs3743292	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr15	49148356	rs16961733	C	A	2156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.97;ReadPosRankSum=1.130;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:26,94:0.78:120
chr15	49149828	rs4774526	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	49284631	rs144390326	C	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:70,138:0.66:208
chr15	49421868	rs507054	T	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49423098	rs2289390	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	49461219	rs16962147	C	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.298;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:87,36:0.29:123
chr15	49487225	rs11635814	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr15	49517360	rs79725090	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr15	49576029	rs111622308	A	AG	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr15	49620200	rs1055254	C	T	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	49800394	rs58845336	G	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	49800496	rs73400279	G	T	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	49867122	rs12901416	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	49867148	rs12902794	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49867323	rs12902107	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	49869693	rs73404174	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	49918859	rs111659310	A	AAT	607.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	49919070	rs16962668	C	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	49926993	rs111446752	TA	T	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.17;QD=20.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	49927122	rs200826351	C	CTATT	347.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	49935484	rs192415104	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	49935505	rs200701631	T	TTC	276	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=-1.015;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	50152274	rs4494483	T	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr15	50152583	rs4774549	G	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr15	50158557	rs61731575	T	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,36:0.29:126
chr15	50158695	rs11630021	C	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.551;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:209,88:0.30:297
chr15	50168830	rs74012822	C	T	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr15	50189448	rs2413976	C	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.236;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr15	50209258	rs16963067	T	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	50212785	rs4426299	G	A	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	50226313	rs2452524	G	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr15	50272085	rs8034382	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	50279662	rs16963151	T	C	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.117;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:241,81:0.25:322
chr15	50311135	rs12591825	C	A	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr15	50311148	rs11070741	A	G	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr15	50474766	rs1648348	A	C	5822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.138;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=17.836;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=0.429;SOR=2.204;set=HC	GT:AD:AF:DP	1/1:3,226:0.99:229
chr15	50489677	rs1863511	A	T	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	50497354	rs2278166	G	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	50546973	.	CT	GT	177	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=33;MMLQ=25;MQ=58.28;NF=0,2;NR=7,4;PP=177,102;QD=25.7142857143;SC=CTCTCTCTCTCTGTGTGTGTA;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=7,6;WE=50546981;WS=50546963;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr15	50546973	.	CT	CTGT	412.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AF:DP	0/1:0.80:20
chr15	50570999	rs11372405	G	GT	910.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr15	50574704	rs145780053	T	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	50581634	rs11352059	TA	T	1272.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.620;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:15,83:0.85:98
chr15	50751261	rs114541731	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr15	50754339	rs3098169	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	50754687	rs114283306	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-0.819;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	50757361	rs140695550	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:102,69:0.40:171
chr15	50773755	rs3131561	G	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	50776525	rs10220843	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	50781963	rs3098176	T	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	50787871	rs16963744	T	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	50787955	rs17645290	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	50787957	rs72738980	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.967;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	50821945	rs3098200	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	50822178	rs62019151	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr15	50836146	rs76324528	G	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.811;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr15	50836243	rs3109878	T	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.858;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	50854029	.	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.531;QD=0.94;ReadPosRankSum=0.000;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr15	50867082	rs473357	G	A	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	50867142	rs16963774	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:189,78:0.29:267
chr15	50867441	rs16963775	G	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr15	50873121	rs147578012	A	AC,AAC	3878.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.171;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=29.84;ReadPosRankSum=0.434;SOR=0.510;set=HC	GT:AD:AF:DP	1/2:3,78,49:0.60,0.38:130
chr15	50881940	rs75947549	T	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr15	50885976	rs567109	G	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.633;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	50888619	rs675011	A	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	50899234	rs143148709	C	CTA	800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.80;ReadPosRankSum=0.555;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr15	50899309	rs11633404	C	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.473;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:95,26:0.21:121
chr15	50901929	rs35281039	TA	T	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.207;QD=3.73;ReadPosRankSum=1.177;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr15	50903600	rs4775894	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-2.132;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	50920509	.	C	CT	34	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.7323;HP=13;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=1;NR=2;PP=34;QD=13.0;SC=AAGGTGAACACTTTTTTTTTT;SbPval=0.42;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3;WE=50920517;WS=50920499;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	50925063	rs79443717	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr15	50926523	rs144518112	AAAATAAAT	A	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.281;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr15	50941108	rs2063011	C	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	51017527	rs140174698	AAAAAC	A	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr15	51029058	rs77085986	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	51040798	rs8035452	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr15	51201158	rs76674534	A	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.432;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:95,37:0.28:132
chr15	51204364	rs1147129	G	A	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	51204394	rs3214932	C	CT	8148.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	51207818	rs2663553	G	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	51217475	rs2306332	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr15	51276128	rs2306335	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	51293164	rs3840015	G	GT	115.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	51350655	rs76241791	AT	A	1235.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr15	51386668	rs74702036	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr15	51502844	rs4646	A	C	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	51507380	.	A	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.783;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:157,56:0.26:213
chr15	51507794	rs2289107	T	C	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-0.042;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:72,128:0.64:200
chr15	51507968	rs700519	G	A	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:76,185:0.71:261
chr15	51519945	rs28892005	A	AAAG	1824.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr15	51529166	rs60308277	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:84,40:0.32:124
chr15	51534547	rs727479	C	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	51535192	rs28757164	G	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr15	51634061	rs139283412	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr15	51634255	rs2446421	T	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr15	51634323	rs184002811	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr15	51675625	rs2445738	C	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	51676232	rs2168623	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr15	51687250	rs75938739	G	A	330.56	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	51689624	rs1147142	A	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	51743718	rs16964357	T	C	143.53	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr15	51749726	rs930920	A	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr15	51750652	rs11630842	G	A	309.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=-0.351;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr15	51750846	rs7165887	G	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr15	51751091	rs111734926	TAGCAGC	T	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr15	51758345	rs10706765	CA	C	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr15	51770456	rs11291027	AT	A	310.74	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr15	51783820	rs10851500	T	C	6869.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:148,329:0.69:477
chr15	51783981	rs12101858	G	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr15	51791559	rs12102203	A	G	6714.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:121,311:0.72:432
chr15	51795172	rs12592889	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr15	51868373	rs2414105	A	G	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.252;QD=15.38;ReadPosRankSum=-0.238;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:39,103:0.73:142
chr15	51868380	rs59569487	TA	T	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=6.343;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.045;QD=5.71;ReadPosRankSum=-1.262;SOR=0.192;set=HC	GT:AD:AF:DP	0/1:24,39:0.62:63
chr15	51914662	rs2278990	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:90,152:0.63:242
chr15	51914716	rs2278989	T	C	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:80,163:0.67:243
chr15	51914778	rs6493514	T	G	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	51981595	.	GGGGTGT	G,GGT	2949.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=99;set=Intersection	GT:AF:DP	1/2:0.25,0.73:48
chr15	51991454	rs2622774	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.623;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	52155314	rs2570251	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr15	52180050	rs2554309	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	52185961	rs11370809	C	CA	618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.810;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:16,44:0.73:60
chr15	52188531	rs138973842	C	CAA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=1.039;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	52188754	rs990666	A	G	4152.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:73,194:0.73:267
chr15	52192262	rs113447185	A	AGTTAT	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	52201130	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=0.295;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr15	52250789	rs2593187	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-1.029;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	52252799	rs2258248	C	T	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	52257874	rs2241503	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	52257896	rs2593203	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr15	52264094	rs17612102	T	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	52350879	rs2306793	T	C	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:38,130:0.77:168
chr15	52353777	rs116227351	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	52404862	rs2231292	A	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=9.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.297;SOR=1.924;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr15	52415086	rs142280018	T	TACAC	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.566;QD=17.39;ReadPosRankSum=1.006;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	52421000	rs2414135	A	G	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr15	52486335	rs59434591	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	52487523	rs3751604	T	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-1.943;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr15	52504142	rs2278295	T	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr15	52506937	rs34638854	A	AT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.700;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr15	52510884	rs73404874	C	G	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-1.953;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:28,75:0.73:103
chr15	52517737	rs11070887	A	C	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	52521383	rs62623565	C	T	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	52531813	rs17707007	T	C	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	52536475	rs56066716	T	A	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	52539235	rs41504447	A	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr15	52539673	rs10163109	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.872;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr15	52539825	rs55870025	C	A	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:60,155:0.72:215
chr15	52540890	rs77370050	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:249,117:0.32:366
chr15	52545702	rs74455958	C	T	304.31	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	52548759	.	A	AACACACAC	46.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr15	52548784	.	A	ACACACACACG,ACACACACG	472	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=23;MMLQ=23;MQ=62.14;NF=12,12;NR=24,24;PP=472,118;QD=13.2222222222;SC=ACACACACACACGCGCGCGCG;SbPval=0.4;Source=Platypus;TC=44;TCF=13;TCR=31;TR=36,36;WE=52548792;WS=52548774;set=Platypus	GT:AF:DP	0/1:0.82:44
chr15	52553007	rs4497629	C	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	52556429	rs4776032	A	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	52561891	.	AT	A	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.369;QD=1.16;ReadPosRankSum=-0.964;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr15	52564191	rs3751629	T	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	52569261	rs16964849	C	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.008;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr15	52570093	rs78359326	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr15	52571270	.	G	GT	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.354;QD=4.06;ReadPosRankSum=2.128;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:53,36:0.40:89
chr15	52571318	rs151000366	T	C	876.18	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:4,38:0.90:42
chr15	52575170	rs3751624	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:69,20:0.22:89
chr15	52605861	rs4987194	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:64,19:0.23:83
chr15	52613502	rs16964891	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr15	52615712	rs2290334	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr15	52628489	rs8035295	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	52632648	rs744501	C	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr15	52635457	rs16964903	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:197,90:0.31:287
chr15	52638970	rs147613680	AAAAT	A	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	52643564	rs1058219	G	A	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:40,142:0.78:182
chr15	52645746	rs28556657	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:104,46:0.31:150
chr15	52646327	rs28488423	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr15	52652174	rs13329278	T	C	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:82,32:0.28:114
chr15	52667450	rs3816449	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr15	52667552	rs2414145	G	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:95,198:0.68:293
chr15	52675261	rs4774621	T	C	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:49,140:0.74:189
chr15	52676392	rs16964944	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.777;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:55,37:0.40:92
chr15	52681572	rs67583538	GA	G	259.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.111;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr15	52681573	rs1724623	A	G	1177.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-0.221;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:20,57:0.74:77
chr15	52681574	rs114996345	A	G	268.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.454;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr15	52684004	rs1669872	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr15	52689526	rs2924130	T	C	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	52689631	rs1724577	T	G	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:61,111:0.65:172
chr15	52702400	rs10518689	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr15	52702699	rs72623980	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr15	52708189	rs1669858	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	52708502	rs61363656	T	C	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:45,130:0.74:175
chr15	52708534	rs11856752	T	G	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:14,57:0.80:71
chr15	52725334	rs11853875	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr15	52820812	rs28556791	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.71;ReadPosRankSum=-1.200;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	52877016	rs61731680	T	C	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-0.387;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:40,75:0.65:115
chr15	52901283	rs61731670	T	C	494.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.628;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr15	52901284	rs58018557	T	C	3318.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.31;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	52901321	rs59704628	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr15	52903268	rs79635746	C	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr15	53072673	rs10518694	C	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	53230641	.	G	A	2173.77	.	AC=1;AF=0.500;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	0/1:54,106:0.66:160
chr15	53809982	rs16966158	T	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-1.516;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:107,38:0.26:145
chr15	53815527	.	AAG	A	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.756;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:87,16:0.16:103
chr15	53901685	rs1906396	G	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.605;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:295,94:0.24:389
chr15	53901686	rs114605462	T	C	6414.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:94,295:0.76:389
chr15	53901886	rs142845992	G	GT	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr15	53905820	rs34829468	GA	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.670;QD=1.94;ReadPosRankSum=-1.857;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr15	53907679	rs16966318	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	53907906	rs16966320	A	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:114,53:0.32:167
chr15	53907948	rs17730281	G	A	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:85,172:0.67:257
chr15	53908062	rs60404950	T	C	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:171,77:0.31:248
chr15	53994493	rs6416452	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	53998011	rs57319234	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr15	53998314	rs690235	G	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	54006794	rs2061598	G	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	54008795	rs690337	T	C	11066.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.012;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=1.644;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:2,435:1.00:437
chr15	54008845	rs690346	T	C	11133.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr15	54014882	rs518263	T	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr15	54025353	rs496290	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr15	54025422	rs2614222	A	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr15	54306132	rs371029211	T	A	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:80,209:0.72:289
chr15	54306925	rs12437941	G	A	5926.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	54307836	rs143506828	A	C	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:61,175:0.74:236
chr15	54527421	rs116417795	A	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	54528862	rs58469923	G	T	77.96	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:1,4:0.80:5
chr15	54529629	rs7162346	T	C	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	54556259	rs12917364	A	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	54624313	rs11856987	T	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr15	54685463	rs489526	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.133;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr15	54786837	rs28537248	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr15	54792428	rs8025195	A	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	54838909	rs73403813	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.843;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	54847509	rs8039515	G	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	54914716	rs2681964	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	54915975	rs2414332	A	T	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	54918943	rs11852743	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=27.63;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	54919047	rs1520411	A	G	7358.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.73;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr15	55488686	rs7179785	G	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:33,92:0.74:125
chr15	55489065	rs9300	G	A	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	55489104	rs13733	A	G	7518.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	55497691	rs1050931	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	55520774	rs74015516	T	C	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	55522774	rs74015520	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	55621889	rs28459661	T	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr15	55625933	rs569333	C	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	55632859	rs678892	G	T	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr15	55647227	rs8039224	G	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr15	55653031	rs501231	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr15	55653181	rs8042642	A	G	187.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr15	55664144	rs35101262	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-1.470;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:225,60:0.21:285
chr15	55664220	rs3203152	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:29,115:0.80:144
chr15	55665089	rs8041885	T	C	6091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=0.461;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:92,287:0.76:379
chr15	55665313	rs8041044	C	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr15	55670645	rs13329399	A	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr15	55700981	rs16953240	C	A	6158.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:142,288:0.67:430
chr15	55701233	rs56919957	TG	T	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr15	55710349	rs73406983	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr15	55710369	rs6493785	T	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	55722882	rs57809907	C	A	422.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=1.303;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr15	55723151	rs7181805	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.619;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	55782708	rs73411030	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	55782873	rs146913170	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr15	55783194	rs73411032	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.578;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr15	55789793	rs112865941	TA	T	254.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr15	55790283	rs61675921	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:160,61:0.28:221
chr15	55790298	rs28369251	A	G	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:79,201:0.72:280
chr15	55790310	rs3743204	G	T	9068.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr15	55790414	rs16976354	G	T	5676.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:117,269:0.70:386
chr15	55790530	rs3743205	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr15	55840995	rs2617227	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	55841032	rs12917202	A	G	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.26;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	55841195	rs76876528	TA	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.427;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:80,31:0.28:111
chr15	55881107	rs1992237	C	T	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	55881111	rs1992236	A	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	55916459	rs116750985	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr15	55929515	rs10518816	C	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr15	55930835	rs61729647	G	A	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr15	55965521	rs28556884	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.165;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr15	55971385	rs7179697	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.40;ReadPosRankSum=-0.652;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	55972184	rs28620386	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr15	55972660	rs35467969	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=1.215;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:146,33:0.18:179
chr15	56032975	rs7182733	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	56122347	rs2288344	T	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr15	56122664	rs12910830	T	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:192,69:0.26:261
chr15	56122836	rs28558710	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr15	56125135	rs8024944	C	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.446;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:104,28:0.21:132
chr15	56125182	rs8026172	T	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.349;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:142,44:0.24:186
chr15	56130286	rs11071227	A	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	56139153	rs2288346	T	C	143.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=-0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr15	56144888	.	AATATATAT	A	183.84	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	56152598	rs4774228	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	56166243	rs16976618	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr15	56207811	rs62043855	T	G	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:59,121:0.67:180
chr15	56208108	rs73416291	G	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:73,179:0.71:252
chr15	56208535	rs12440230	G	A	8886.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:242,421:0.63:663
chr15	56216752	rs2271288	A	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr15	56216793	rs2271289	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr15	56243792	rs10718511	TA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-2.162;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr15	56258593	rs72734354	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	56258659	rs67955420	A	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=0.440;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,40:0.71:56
chr15	56258785	rs67192017	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;MQ=61.43;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	56285625	rs62045233	C	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	56297909	rs3959682	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:99,28:0.22:127
chr15	56297947	rs62046378	C	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.471;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.580;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=-5.493;QD=1.97;ReadPosRankSum=0.066;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr15	56386577	rs7170589	T	G	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	56387931	rs11071247	C	T	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:157,305:0.66:462
chr15	56657581	rs2682033	A	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	56680944	rs1477589	T	C	95.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	56719797	rs795785	G	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	56721264	rs795787	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	56721406	rs808730	C	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	56748541	rs115075574	A	C	361.96	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr15	56756420	rs34807682	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	56923536	rs3803457	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr15	56923714	rs8043381	G	A	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr15	56946296	rs8028457	C	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=1.025;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr15	56946980	rs12911381	T	G	5968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=0.699;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:125,278:0.69:403
chr15	56959028	rs28620278	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:65,21:0.24:86
chr15	56961272	rs12911191	T	A	71.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.38;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	56981703	rs1871861	T	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	56999401	rs73425619	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-2.460;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,30:0.29:103
chr15	57210562	rs213150	C	A	4535.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	57364814	rs2951904	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr15	57458463	rs115080434	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	57484316	rs80000995	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	57484572	rs369602117	CT	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.316;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:105,32:0.23:137
chr15	57523563	rs3838866	AT	A	1521.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	57524756	rs2248620	G	A	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	57554344	rs36060670	T	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-2.987;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:146,59:0.29:205
chr15	57555523	rs7182038	C	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	57565376	rs10047994	T	C	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:204,92:0.31:296
chr15	57731335	rs1280395	A	C	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr15	57731728	rs1280396	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	57732743	rs1280398	T	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:133,68:0.34:201
chr15	57734380	.	G	GAAAAA	54	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.6869;HP=20;HapScore=2;MGOF=151;MMLQ=20;MQ=55.06;NF=3;NR=0;PP=54;QD=19.0;SC=TCATTTATTTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=57734388;WS=57734372;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr15	57743933	rs1280406	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	57744311	rs1018269	T	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr15	57744582	rs1018268	A	G	323.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.05;ReadPosRankSum=1.121;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr15	57745851	rs116754058	G	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr15	57746071	rs2271405	T	C	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	57810541	rs146748860	A	G	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:78,155:0.67:233
chr15	57835868	rs1620315	C	G	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	57835903	rs1620402	T	G	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	57836002	.	GC	G	111.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	57836552	rs1908189	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	57836823	rs8029295	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	57838222	rs8035822	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	57838258	rs2635390	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr15	57839587	rs16977594	A	G	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.021;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:218,93:0.30:311
chr15	57884181	rs1690328	T	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	57884219	rs2453089	A	G	1604.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.60;ReadPosRankSum=-1.179;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr15	57896366	rs2172611	A	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	57896658	rs2453091	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	57910164	rs937254	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	57910241	rs147173331	T	C	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:39,102:0.72:141
chr15	57910444	rs935548	A	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	57913720	rs118149133	T	G	797.78	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,38:0.88:43
chr15	57917921	rs117558049	A	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chr15	57917944	rs150919450	G	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:41,129:0.76:170
chr15	57918069	rs2069133	A	G	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	57918090	rs2958059	A	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	57925981	rs140373684	T	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-1.762;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr15	57931544	rs66739325	G	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.462;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:105,42:0.29:147
chr15	57967219	rs1991252	T	C	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	57976523	rs6493944	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr15	57976583	rs2554032	A	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	57976812	rs79243265	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-2.305;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr15	58001341	rs138355131	G	A	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:58,105:0.64:163
chr15	58287435	.	C	A	223	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=22;HapScore=2;MGOF=86;MMLQ=27;MQ=57.55;NF=3;NR=16;PP=223;QD=13.5669059235;SC=AAAAAAAAAACAAACAGAAAT;SbPval=0.62;Source=Platypus;TC=24;TCF=4;TCR=20;TR=19;WE=58287443;WS=58287423;set=Platypus	GT:AD:AF:DP	1/1:5,19:0.79:24
chr15	58459075	rs16939839	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr15	58465171	rs2292712	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	58471368	rs2249783	C	T	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	58476092	rs3832977	G	GA	2158.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	58476281	rs1867380	A	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	58723426	rs1077835	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	58723479	rs1077834	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	58723675	rs1800588	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr15	58724496	rs113234775	T	A	393.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	58833938	rs6076	G	A	546.90	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr15	58837910	rs2414592	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	58838010	rs6083	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-2.218;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:140,45:0.24:185
chr15	58840450	rs1007543	A	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	58853079	rs3829462	C	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	58853109	rs3829461	A	G	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	58853212	rs71964604	GAC	G	7032.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	58853218	rs55913623	C	T	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	58853307	rs4774305	C	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	58853363	rs1869129	C	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	58857230	rs4775080	G	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	58857255	rs4775081	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	58860963	rs6074	C	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.030;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:119,37:0.24:156
chr15	58891949	rs35772938	GA	G	1108.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:15,72:0.83:87
chr15	58904237	rs8039791	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.966;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr15	58913663	rs113236681	A	G	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:77,207:0.73:284
chr15	58919857	rs78840742	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr15	58932932	rs7165402	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:61,20:0.25:81
chr15	58933027	rs35731698	G	T	5530.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:120,258:0.68:378
chr15	58935986	rs2303532	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	58938436	rs12912286	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	58947476	rs12915950	C	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	58947625	rs12916010	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	58974349	.	GA	G	290.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	58983425	rs7161889	G	C	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	58983588	rs7163162	T	A	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.44;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	58984394	rs12437998	G	C	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:207,86:0.29:293
chr15	58984407	rs12437955	C	T	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	58984683	rs139846838	A	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:95,187:0.66:282
chr15	58985164	rs4774310	T	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:244,107:0.30:351
chr15	58985330	rs112635599	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr15	59010111	rs6494034	C	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.999;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:115,19:0.14:134
chr15	59080203	rs7169205	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	59094494	rs201818932	C	CT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.464;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr15	59175778	rs77358844	A	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr15	59213678	rs11630160	G	A	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-2.559;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:248,84:0.25:332
chr15	59213760	rs138397635	A	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,90:0.67:134
chr15	59347757	rs1446238	G	A	87.94	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr15	59347929	rs1446239	C	A	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr15	59358845	rs62002543	A	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr15	59358862	rs62002544	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr15	59368167	rs7178935	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:43,91:0.68:134
chr15	59368510	rs4775115	T	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr15	59376531	rs12915899	T	C	306.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr15	59381769	rs2289895	A	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	59399501	rs11293095	CT	C	146.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=0.908;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	59406581	rs8039514	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr15	59415892	.	CG	C	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-0.981;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr15	59415934	rs3830310	CAT	C	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	59429111	rs11539756	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	59453384	rs2306791	T	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr15	59480296	rs77335532	C	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:30,95:0.76:125
chr15	59480470	rs77386324	G	T	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:64,179:0.74:243
chr15	59494673	rs2306787	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-2.003;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	59497708	rs3834953	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.365;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:126,51:0.29:177
chr15	59499179	rs3809530	G	A	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=26.05;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	59499228	rs3809529	C	T	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.966;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:241,85:0.26:326
chr15	59499274	rs3809528	C	A	7489.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	59500116	rs3825937	T	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.467;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr15	59510189	rs2230155	G	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:216,90:0.29:306
chr15	59515434	rs2306779	C	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=1.488;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:15,60:0.80:75
chr15	59515446	rs2306780	C	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.011;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr15	59517026	rs73422973	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:38,89:0.70:127
chr15	59524056	rs7165587	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	59548475	rs4508371	C	T	20397.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr15	59664607	rs7175010	C	A	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	59750930	rs11071448	G	A	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:50,93:0.65:143
chr15	59750960	rs7359171	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	59752053	rs3803445	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	59784493	rs4296198	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr15	59784648	rs4417505	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr15	59784726	rs16941446	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=0.289;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr15	59799278	rs4278683	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	59911892	rs3743119	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	59931372	rs145493984	GAAAGT	G	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr15	59931429	rs2306354	G	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	59931556	rs8033208	G	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	59944203	rs11637071	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	59944300	rs4774340	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	59960155	rs6151570	G	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.86;ReadPosRankSum=-1.586;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	59960941	rs6151566	CCT	C	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	59960980	rs6151565	C	T	165.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.07;ReadPosRankSum=1.184;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr15	59961646	rs2307273	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	59963272	rs56337803	C	CA	81.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.17;ReadPosRankSum=-1.111;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	59964798	rs4774342	C	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	59972353	.	GT	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.232;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr15	59972372	rs6151510	A	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr15	59972552	rs6151508	A	AT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.019;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr15	59974777	rs6151483	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr15	59981491	rs2306359	T	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:171,78:0.31:249
chr15	59981636	rs6151434	G	A	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr15	60643302	rs3743269	T	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	60644680	rs116367881	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.210;QD=2.94;ReadPosRankSum=0.088;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr15	60649579	rs5813020	TC	T	3568.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	60678298	rs11855679	T	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-1.872;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:109,35:0.24:144
chr15	60678328	rs11858864	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.874;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:134,27:0.17:161
chr15	60678350	rs7182242	T	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.518;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:124,28:0.18:152
chr15	60685141	rs11318426	TA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.656;QD=6.03;ReadPosRankSum=1.688;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr15	60689877	rs12904258	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=38.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.339;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr15	60689927	rs12904756	G	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=79.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.286;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:134,61:0.31:195
chr15	60690089	rs12904657	A	G	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.322;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:265,86:0.25:351
chr15	60720488	rs59228235	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.06;ReadPosRankSum=-1.207;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	60720603	rs79295158	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr15	60724118	rs12437617	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.722;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr15	60724317	rs60675189	T	TA	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	60734697	rs1063100	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.829;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr15	60740915	rs1901993	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	60742063	rs1869484	G	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.150;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr15	60748783	.	T	TAC	93.73	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.63;QD=23.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	60758929	rs74858095	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.391;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr15	60760170	rs116704803	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.549;QD=9.65;ReadPosRankSum=-0.395;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr15	60771289	rs3743267	A	G	4009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.261;QD=4.30;ReadPosRankSum=-1.571;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:670,262:0.28:932
chr15	60771438	rs11389291	G	GC	287.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr15	60789798	rs11071539	G	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.354;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:133,47:0.26:180
chr15	60791954	rs2290430	A	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr15	60797607	rs7171309	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.337;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr15	60824108	rs10851682	T	C	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	60885130	rs75937241	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:189,85:0.31:274
chr15	61521567	rs73436629	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	61521579	rs77362668	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	61521579	.	AAA	GAG	1028	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=4;HapScore=1;MGOF=45;MMLQ=28;MQ=60.0;NF=5;NR=14;PP=1028;QD=56.9193618349;SC=GCAGGAGGGAAAAAGCAGGCG;SbPval=0.7;Source=Platypus;TC=20;TCF=6;TCR=14;TR=19;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr15	61521581	rs117108602	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.11;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	62146969	rs2241491	T	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	62147170	rs111710593	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr15	62147207	rs2241492	T	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr15	62148730	rs3833021	TA	T	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr15	62160758	rs7163441	C	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	62167017	rs6494299	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	62167897	rs12708469	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	62169072	rs11071634	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	62172985	rs3809517	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	62175019	rs12912348	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	62182540	rs74749187	C	T	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.142;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:192,89:0.32:281
chr15	62199342	rs28413840	T	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	62201333	rs35201581	GA	G	1787.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:11,101:0.90:112
chr15	62202290	rs34965045	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	62202482	rs10851704	C	T	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr15	62210274	rs11071639	G	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	62223273	rs9788670	C	T	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	62232796	rs7172838	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	62241655	rs80151244	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=2.271;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr15	62254845	rs116538864	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	62259637	rs3784634	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=0.483;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr15	62265019	rs3833020	A	AT	154.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	62265507	rs11071645	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr15	62269247	rs77976030	T	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.882;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr15	62284065	rs28721460	C	T	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr15	62284101	rs8032433	A	G	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.855;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.793;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr15	62304420	rs140372940	GACACAC	G	1044.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.408;QD=34.82;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr15	62315950	rs28664955	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr15	62325518	rs12917535	A	T	34.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	62325612	rs375279573	C	T	368.18	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr15	62327127	rs2414758	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	62352374	rs11639147	A	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	62456358	rs8040712	A	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:69,21:0.23:90
chr15	62534764	rs2414766	A	T	1666.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-1.316;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:12,85:0.88:97
chr15	62535030	rs1996469	G	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	62535537	rs144091797	C	CTG	28096.73	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr15	62539151	rs7402021	T	C	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	62539153	rs59880159	T	TGG	5632.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	62539162	rs2955803	A	C	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	62539185	rs2945418	T	C	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	62539304	rs116584675	G	A	12948.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;MQRankSum=-0.303;QD=24.66;ReadPosRankSum=-1.182;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:1,524:1.00:525
chr15	62539781	rs2611797	A	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	62932586	rs6494334	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	62944383	rs77328162	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	62950154	rs74652258	G	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	62967342	rs1878785	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	62967395	rs1878784	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:178,79:0.31:257
chr15	62967554	rs1878783	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	62979016	rs12917611	A	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	62985267	rs2009523	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr15	62986468	rs28615381	G	C	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=-1.383;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:19,55:0.74:74
chr15	62989755	rs28647240	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr15	62989767	rs28459545	G	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=2.165;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr15	62989775	rs8034474	T	C	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	62989848	rs28415011	C	G	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:71,141:0.67:212
chr15	62990916	rs12906130	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr15	62990971	rs12905981	C	T	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.449;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:146,50:0.26:196
chr15	62991117	rs76916304	C	A	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:32,103:0.76:135
chr15	62993464	.	G	GT	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.173;QD=9.13;ReadPosRankSum=-0.816;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr15	62994784	rs67465793	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr15	62994928	rs12908653	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:146,59:0.29:205
chr15	62999215	rs75810253	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr15	63008489	rs871700	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	63008764	rs79796317	T	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr15	63009733	rs938983	A	G	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:58,129:0.69:187
chr15	63030398	rs12900862	T	C	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	63044379	rs7171264	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	63044637	rs7176359	A	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	63044687	rs149088308	G	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr15	63047778	rs8033767	C	T	9144.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr15	63053858	rs3803497	T	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.619;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr15	63054439	rs2030040	C	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr15	63055658	rs10152548	T	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	63063141	rs34815657	C	CT	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.367;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr15	63075918	rs111436593	CTCTGTG	C	205.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr15	63075920	rs202118499	CTGTGTG	C	634.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr15	63089272	rs57355661	G	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	63128005	rs7180139	T	A	5270.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:107,243:0.69:350
chr15	63131117	rs937418	T	A	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	63131237	rs10679176	C	CAG	1680.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	63335326	rs150546552	T	TTTG	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr15	63340416	rs73431508	A	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.678;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr15	63340607	rs4075047	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:97,38:0.28:135
chr15	63340647	rs4374117	A	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	63340705	rs111470259	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr15	63340989	rs148517607	C	CG	893.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:137,31:0.18:168
chr15	63340990	rs117389407	C	T	902.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.305;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.946;QD=5.34;ReadPosRankSum=1.012;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:137,32:0.19:169
chr15	63349096	rs4775613	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.796;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:138,56:0.29:194
chr15	63351603	rs73440404	C	T	152.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	63351687	rs4775614	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	63351840	rs1071646	C	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	63353760	rs4774472	C	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	63356104	.	G	A	321.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr15	63362179	rs73440433	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,88:0.64:137
chr15	63363401	rs201620283	C	CATTTT,CATTTTGTTTT	1494.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/2:0.76,0.24:21
chr15	63413997	rs8182083	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	63414083	rs34317102	A	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.309;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr15	63433766	rs2729835	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:207,105:0.34:312
chr15	63434110	rs8468	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr15	63446199	rs59953192	CAAAATT	C	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr15	63446332	rs35018260	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.504;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr15	63448780	rs2270948	C	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.176;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:75,30:0.29:105
chr15	63449777	rs12902921	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr15	63515319	rs58797377	G	GTTT	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.300;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr15	63516033	rs8032533	G	A	1109.82	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:6,49:0.89:55
chr15	63547859	rs3784673	G	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr15	63548787	rs10851726	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.374;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:114,44:0.28:158
chr15	63554820	rs142261551	ATG	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-0.000;QD=7.39;ReadPosRankSum=0.697;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	63554824	rs7172246	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-0.000;QD=7.40;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	63570340	rs11858705	T	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr15	63570441	rs11359006	GA	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=2.023;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:15,60:0.80:75
chr15	63578709	rs58838039	CT	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.091;QD=3.31;ReadPosRankSum=0.036;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr15	63594464	rs11854421	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	63848805	rs3751043	C	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	63866584	rs34776764	C	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.044;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:77,18:0.19:95
chr15	63915786	rs11630290	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	63916223	rs74343831	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.123;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	63922752	rs10851731	T	A	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr15	63926289	rs78323570	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.836;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr15	63929323	rs74725659	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr15	63932513	rs2228517	G	C	3688.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:47,168:0.78:215
chr15	63935147	rs75467798	C	T	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.020;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:154,62:0.29:216
chr15	63935147	.	CAA	TAG	377	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=23;MQ=59.91;NF=27;NR=16;PP=377;QD=10.0108808107;SC=GATATAACTACAATATTACCT;SbPval=0.73;Source=Platypus;TC=132;TCF=76;TCR=56;TR=43;WE=63935157;WS=63935137;set=Platypus	GT:AD:AF:DP	0/1:89,43:0.33:132
chr15	63935149	rs10519223	A	G	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.87;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	63937209	rs2229749	C	G	12245.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr15	63940247	rs141097490	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:100,37:0.27:137
chr15	63941854	rs75914275	A	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr15	63942090	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr15	63953073	rs142673524	A	AAC	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.507;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr15	63953153	rs2272209	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	63954029	rs2228511	C	T	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	63958762	rs1815130	T	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	63966513	rs72367123	C	CA	1260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.880;QD=9.77;ReadPosRankSum=-1.919;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:43,86:0.67:129
chr15	63970456	rs2228510	T	C	4156.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:66,194:0.75:260
chr15	63984772	rs11630720	T	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	63988357	rs2255243	C	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	63999112	rs72750987	G	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	64010742	rs78835439	A	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr15	64017798	rs11632718	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	64020073	rs9920746	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	64027065	rs77339802	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr15	64039050	rs8034675	T	C	395.82	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr15	64039879	rs11631436	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,88:0.70:125
chr15	64048990	rs2271241	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr15	64050300	rs12912999	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	64056415	rs8030164	C	T	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.859;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:138,63:0.31:201
chr15	64056437	rs3764186	T	C	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,96:0.74:130
chr15	64067136	rs35471228	A	T	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.682;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:234,87:0.27:321
chr15	64204220	rs79693133	G	A	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:231,93:0.29:324
chr15	64214954	rs920762	G	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr15	64214993	rs920761	G	C	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:28,91:0.76:119
chr15	64215375	rs4776669	G	C	6048.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:129,275:0.68:404
chr15	64216965	rs59442217	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:55,15:0.21:70
chr15	64218088	rs76734404	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.339;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr15	64231616	rs73452775	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.599;QD=4.21;ReadPosRankSum=-1.423;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	64283283	rs74021217	C	A	178.79	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	64283625	rs7168753	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr15	64380737	rs62023398	G	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=2.181;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr15	64388077	rs7173976	G	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr15	64404958	.	C	CA	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.165;QD=3.88;ReadPosRankSum=-0.542;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:62,35:0.36:97
chr15	64410484	rs2290117	G	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	64418397	rs1130603	G	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	64418483	rs2290121	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	64420059	rs62024175	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	64428657	rs2290122	G	A	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	64434918	rs62024240	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.927;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr15	64444760	.	A	G	4577.77	.	AC=1;AF=0.500;AN=2;DP=326;set=Intersection	GT:AD:AF:DP	0/1:104,216:0.68:320
chr15	64445287	rs57323715	C	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr15	64446648	.	C	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.012;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:240,65:0.21:305
chr15	64448365	rs2253557	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	64480791	rs73462579	C	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:18,66:0.79:84
chr15	64496926	rs62024569	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=2.036;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr15	64508763	rs6494466	G	A	5294.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	64551199	rs58926018	C	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	64558040	rs62021612	C	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr15	64592522	rs7163558	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:48,124:0.72:172
chr15	64673293	rs28504999	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr15	64693149	rs11380356	G	GT	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.891;QD=12.11;ReadPosRankSum=1.107;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr15	64737225	rs7167612	G	A	1260.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.10;ReadPosRankSum=-0.141;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:8,58:0.88:66
chr15	64742670	rs7172012	T	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr15	64915106	rs525878	C	T	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:98,237:0.71:335
chr15	64962630	rs11633399	A	C	6599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-1.327;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:107,310:0.74:417
chr15	64967654	rs16948170	C	T	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:65,150:0.70:215
chr15	64973754	rs73454993	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	64981224	rs75777872	T	G	6600.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:101,310:0.75:411
chr15	64983837	.	A	AT	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=5.085;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.343;QD=7.57;ReadPosRankSum=1.315;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:22,30:0.58:52
chr15	64995104	rs73456908	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=3.167;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	65054562	rs57945504	T	TG	5658.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	65054571	rs71133474	A	AG	6208.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	65108795	rs78139154	C	T	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr15	65111574	rs56906672	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.62;ReadPosRankSum=-0.863;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr15	65113764	rs67278573	CTT	C	586.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.272;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:7,26:0.79:33
chr15	65114484	rs8031690	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:3,212:0.99:215
chr15	65116328	rs12899195	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	65153595	rs832885	G	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	65157085	rs371213556	T	TC	3933.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	65158319	rs148948097	T	TGGGCTG	1688.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr15	65204276	rs115225495	G	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr15	65208227	rs1471834	G	A	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	65209718	rs34503100	G	GTGTC	1013.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:144,36:0.20:180
chr15	65209818	rs2056496	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr15	65209880	rs2056497	A	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	65222875	rs7168400	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr15	65234869	rs3057944	C	CT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.065;SOR=1.407;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr15	65268979	rs4776255	C	G	77.03	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	65273147	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.433;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	65273399	rs4776659	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	65298672	rs4776660	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	65315961	rs4776661	T	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	65321938	rs2946655	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=2.350;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr15	65344035	rs2946676	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	65347405	rs2232762	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,76:0.75:101
chr15	65350743	rs2232759	C	G	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=4.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.792;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:161,53:0.25:214
chr15	65350968	rs2232758	T	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:112,44:0.28:156
chr15	65357491	rs2232753	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:29,83:0.74:112
chr15	65369395	rs2919358	C	T	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:52,175:0.77:227
chr15	65369531	rs2946642	G	T	3379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-1.348;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:64,151:0.70:215
chr15	65369951	rs2919359	A	G	12164.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr15	65370353	rs2919360	T	C	11224.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr15	65441838	rs151312669	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.692;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr15	65449169	rs2946670	C	T	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr15	65477364	.	AC	A	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DP=933;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=0.947;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:779,106:0.12:885
chr15	65489128	rs938952	C	T	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:77,153:0.67:230
chr15	65489688	rs2679117	T	C	26614.77	.	AC=2;AF=1.00;AN=2;DB;DP=1045;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,1034:1.00:1034
chr15	65490038	rs28453779	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.263;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:151,50:0.25:201
chr15	65490901	rs2679118	T	C	9830.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr15	65494212	rs2073711	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr15	65495820	rs2072048	A	G	2336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.698;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:32,59:0.65:91
chr15	65495827	rs2073707	A	G	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-1.227;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:33,58:0.64:91
chr15	65496475	rs2585035	T	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=1.158;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr15	65496587	rs2585034	C	T	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:72,129:0.64:201
chr15	65497849	rs2681038	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr15	65499955	rs80327877	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr15	65502132	rs16948565	T	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-2.855;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr15	65621138	rs11853777	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=1.600;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:97,19:0.16:116
chr15	65621441	rs12907128	C	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:213,91:0.30:304
chr15	65621857	rs509652	T	C	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-1.096;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:156,49:0.24:205
chr15	65623124	rs3058049	C	CTCTA	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr15	65624228	rs686739	G	C	3855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.592;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:444,227:0.34:671
chr15	65667690	rs74349672	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr15	65667724	rs666623	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	65669905	.	G	A	36	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=3;NR=1;PP=36;QD=17.6928031368;SC=CCCCCGCGCGGGGTCCGCCCT;SbPval=0.92;Source=Platypus;TC=19;TCF=10;TCR=9;TR=4;WE=65669913;WS=65669895;set=Platypus	GT:AD:AF:DP	1/0:15,4:0.21:19
chr15	65676617	rs2292933	T	C	11458.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.49;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	65676617	.	TG	CA,CG	1486	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=19;MQ=59.77;NF=46,75;NR=46,77;PP=1486,634;QD=16.7333464659;SC=CAGGAGCCTCTGGAGGCAGGG;SbPval=0.52;Source=Platypus;TC=154;TCF=77;TCR=77;TR=92,152;WE=65676632;WS=65676607;set=Platypus	GT:AF:DP	0/1:0.60:154
chr15	65676618	rs61747070	G	A	3877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.909;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:134,184:0.58:318
chr15	65678141	rs7183130	A	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	65678449	rs112966629	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr15	65682721	rs11855428	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr15	65684176	rs76160971	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr15	65684422	rs3216754	T	TC	3249.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:77,118:0.61:195
chr15	65684533	rs2277582	A	G	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:133,257:0.66:390
chr15	65686908	rs12437686	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,56:0.70:80
chr15	65688558	rs35517676	C	CT	5019.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:4,141:0.97:145
chr15	65688791	rs66699194	T	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.876;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:101,33:0.25:134
chr15	65688824	rs1550028	C	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	65689267	rs12442757	T	C	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:77,176:0.70:253
chr15	65693101	rs655936	C	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr15	65693397	rs667436	T	C	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	65693446	rs182571394	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr15	65715051	rs183113068	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.077;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr15	65739303	rs11009	C	A	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	65739371	rs71817756	C	CA	1276.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.952;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:21,79:0.79:100
chr15	65744238	rs149618856	A	AAGT	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	65744267	.	T	TA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-2.299;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr15	65759620	rs77365136	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	65766421	rs352466	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=25.49;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	65772698	rs352461	T	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr15	65856653	rs11539008	G	A	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	65863917	rs2279854	A	C	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	65864411	rs77854980	G	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	65871698	rs11484	G	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	65888223	rs79757744	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	65899420	rs16948873	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	65902922	rs6494529	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	65903286	.	A	G	1657.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr15	65903398	rs4366668	G	A	35738.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,784:1.00:784
chr15	65903400	rs77989486	G	A	34586.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.91;ReadPosRankSum=0.485;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:2,804:1.00:806
chr15	65917355	rs35571449	T	G	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	65931908	rs111310111	A	ACTGAGGC	6109.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr15	65935195	rs12101597	C	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	65936883	rs62014370	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	65944191	rs62014378	T	C	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	65944337	rs77073542	A	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	65947149	rs62014379	T	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	65960195	rs6494531	A	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	65993331	rs185940021	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr15	66007972	rs28687655	A	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	66011802	rs62014394	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	66023700	rs62014398	C	T	4716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-1.318;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:98,225:0.70:323
chr15	66023799	rs28556680	G	T	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	66025010	rs11071849	G	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	66029942	rs146072696	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.974;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr15	66030364	rs60590903	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	66031024	rs10519304	A	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	66044604	rs8033741	A	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	66208958	rs115866640	A	G	5393.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:67,245:0.79:312
chr15	66257236	rs36088570	C	CA	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	66257408	rs333550	T	C	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	66274690	rs551474	T	C	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	66386971	rs59704097	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr15	66411441	rs16949528	C	T	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.388;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:264,81:0.23:345
chr15	66411595	rs28656156	G	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:52,80:0.61:132
chr15	66604032	rs28616181	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=2.222;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr15	66612818	rs750295	A	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr15	66615390	rs199675390	G	GA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.388;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr15	66618342	rs3803412	A	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=3.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.379;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:219,70:0.24:289
chr15	66629666	rs28537939	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.036;QD=3.78;ReadPosRankSum=-1.732;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr15	66629666	.	CT	AT	54	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=16;HapScore=4;MGOF=9;MMLQ=25;MQ=60.9;NF=1,0;NR=2,1;PP=54,44;QD=29.5904041824;SC=CTAAATATATCTTTTTTTTTT;SbPval=0.37;Source=Platypus;TC=7;TCF=1;TCR=6;TR=3,1;WE=66629674;WS=66629656;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	66629666	.	CT	C	54	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=16;HapScore=4;MGOF=9;MMLQ=25;MQ=60.9;NF=1,0;NR=2,1;PP=54,44;QD=29.5904041824;SC=CTAAATATATCTTTTTTTTTT;SbPval=0.37;Source=Platypus;TC=7;TCF=1;TCR=6;TR=3,1;WE=66629674;WS=66629656;set=Platypus	GT:AD:AF:DP	0/1:5,1:0.17:6
chr15	66644521	rs9806123	C	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.774;QD=2.42;ReadPosRankSum=0.614;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr15	66645341	rs28614039	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.313;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr15	66694431	rs16949879	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr15	66727597	rs16949924	G	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.619;QD=4.32;ReadPosRankSum=0.319;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:81,33:0.29:114
chr15	66735551	rs6494573	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=2.518;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr15	66745890	rs7169326	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.332;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr15	66784330	rs73471759	G	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr15	66786782	rs150019625	C	G	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-2.098;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:85,50:0.37:135
chr15	66792761	rs28706938	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.336;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:94,30:0.24:124
chr15	66793480	rs11071895	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	66793677	rs12101954	G	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,39:0.31:127
chr15	66793910	rs79055112	A	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr15	66795937	rs28673176	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.955;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:87,26:0.23:113
chr15	66795980	rs8043062	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	66795991	rs76680479	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr15	66796911	rs139436991	GC	G	46.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr15	66797085	rs77816373	C	T	5779.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:120,253:0.68:373
chr15	66806160	rs34340636	G	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-1.451;QD=16.47;ReadPosRankSum=0.578;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	66806164	rs148612082	C	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.382;QD=18.35;ReadPosRankSum=-0.049;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr15	66806308	rs4238406	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	66812841	rs35497031	T	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.060;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr15	66813251	rs113945693	T	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr15	66813379	rs112681165	T	G	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:67,209:0.76:276
chr15	66816135	rs35996387	C	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	66816183	rs6494579	C	G	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	66821174	rs6494580	G	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	66824526	rs4488397	A	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr15	66824835	rs77024500	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	66829386	rs111564528	C	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-0.728;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	66829396	rs12439324	T	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.98;ReadPosRankSum=0.524;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	66840985	rs11858742	A	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr15	66841033	rs11071898	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr15	66845213	rs74964776	C	G	139.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr15	66853339	rs75625666	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:16,62:0.79:78
chr15	66853683	rs76485286	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:23,105:0.82:128
chr15	66853739	.	A	G	885.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr15	66856983	rs77223596	G	A	8238.73	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:122,364:0.75:486
chr15	66874670	rs8041988	C	T	4136.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.299;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=-0.821;SOR=0.228;set=HC	GT:AD:AF:DP	1/1:1,169:0.99:170
chr15	66976149	rs2414910	G	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	67003841	rs2245159	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	67008708	rs2278603	G	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:46,106:0.70:152
chr15	67009941	rs2469123	C	G	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:40,101:0.72:141
chr15	67234251	rs266383	A	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-2.678;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:275,100:0.27:375
chr15	67234340	rs7183187	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.850;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:114,44:0.28:158
chr15	67358478	rs1061427	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	67391394	rs5813427	GT	G	3096.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	67391497	rs1866319	C	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	67430223	rs1866318	T	C	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	67430552	rs12914140	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr15	67435075	rs745103	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	67457335	rs1065080	A	G	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	67457485	rs2289261	G	C	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,120:0.65:186
chr15	67459013	rs7179893	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	67476971	rs72661157	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr15	67482642	rs72661158	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,96:0.69:140
chr15	67496528	rs146169842	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,84:0.65:129
chr15	67596815	rs10438290	T	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr15	67692502	rs7495023	T	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	67768151	rs3985641	G	C	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	67768242	rs3865017	T	C	775.78	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr15	67782440	rs10574862	AGGAAAT	A	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:76,21:0.22:97
chr15	67814542	rs62015089	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr15	67842526	rs6494670	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr15	67885058	rs28637534	T	C	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	67892991	rs60932739	AC	A	2497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=5.619;QD=4.28;ReadPosRankSum=0.511;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:453,131:0.22:584
chr15	67951228	rs5813451	GA	G	3101.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr15	67984705	rs4343227	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr15	67985931	rs8034680	T	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	68040864	rs12592919	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-2.735;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr15	68041070	rs8037011	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	68114499	rs61734073	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr15	68121483	rs7183168	A	C	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:48,105:0.69:153
chr15	68124853	rs12901293	G	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr15	68346549	rs11855475	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	68379129	rs73423744	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.47;ReadPosRankSum=-1.611;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	68434212	rs113300929	T	TG	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=2.083;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr15	68445912	rs11633620	T	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	68466012	rs73423801	C	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	68492028	rs11071986	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:231,125:0.35:356
chr15	68497597	rs11071990	G	A	5702.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:104,258:0.71:362
chr15	68503962	rs8024979	G	A	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:66,163:0.71:229
chr15	68510693	rs59385667	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr15	68510770	rs8025947	A	G	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	68521805	rs150630197	G	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr15	68522105	.	A	AGGGAG	340.74	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=37.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	68583175	rs6494729	T	C	10019.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr15	68599875	rs2271721	C	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:190,74:0.28:264
chr15	68603625	rs898591	C	T	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	68605074	rs58270888	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr15	68605169	rs4777035	G	A	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:30,76:0.72:106
chr15	68606109	rs2271727	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:73,27:0.27:100
chr15	68609833	rs1516871	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	68612556	rs2271724	T	C	9095.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr15	68613566	rs72741168	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	68613778	rs3736494	G	T	4638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=0.543;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:58,119:0.67:177
chr15	68613787	rs3736493	A	G	4669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=0.465;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:55,118:0.68:173
chr15	68613922	rs8041788	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	68618961	rs2271722	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:92,31:0.25:123
chr15	68624175	rs7167822	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr15	68624290	rs2292745	G	A	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.252;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:228,119:0.34:347
chr15	68624396	rs7168069	A	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	68624641	rs6494733	A	C	15952.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr15	68628143	rs2306023	C	T	1958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.324;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:329,126:0.28:455
chr15	68631740	rs2125998	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	68641362	rs61119953	AG	A	1503.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	68643772	rs72743242	A	G	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:56,102:0.65:158
chr15	68643802	rs114897346	G	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr15	68649356	rs72743257	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	68649587	rs12907890	G	A	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr15	68650648	rs55740555	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	68650913	rs61729771	G	A	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:59,142:0.71:201
chr15	68656864	rs2306013	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.169;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr15	68656881	rs59937100	G	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr15	68656960	rs2306012	A	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:139,65:0.32:204
chr15	68656968	rs59413666	G	A	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:70,157:0.69:227
chr15	68724262	rs2305078	G	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.420;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr15	68987315	rs11072043	A	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.169;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr15	68987341	rs7359311	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr15	69003871	rs3736272	G	T	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:39,130:0.77:169
chr15	69007656	rs1542746	T	G	7109.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:109,321:0.75:430
chr15	69011389	rs1491640	A	C	2962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.45;ReadPosRankSum=2.268;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:39,73:0.65:112
chr15	69011394	rs1491639	C	T	3059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=1.394;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:38,79:0.68:117
chr15	69094158	rs10689979	T	TCA	2072.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr15	69112946	rs4777089	C	A	2802.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.278;QD=25.02;ReadPosRankSum=-0.031;SOR=0.479;set=HC	GT:AD:AF:DP	1/1:1,111:0.99:112
chr15	69112971	rs35802209	G	GCA	2759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=6.564;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.222;QD=15.08;ReadPosRankSum=-2.364;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:41,142:0.78:183
chr15	69222813	rs112625393	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr15	69238445	rs3743093	G	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:244,94:0.28:338
chr15	69325581	rs311893	C	T	7881.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:105,360:0.77:465
chr15	69327737	rs34406284	G	A	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.611;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:336,133:0.28:469
chr15	69327825	rs311889	C	T	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:84,274:0.77:358
chr15	69329624	rs2246273	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	69334957	rs36041565	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-0.833;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	69347593	rs311905	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,76:0.81:94
chr15	69349013	rs7168025	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-2.631;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr15	69349087	rs311906	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	69561181	rs56045514	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,88:0.68:130
chr15	69561518	rs3865014	G	A	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:67,171:0.72:238
chr15	69652451	rs73440972	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.399;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:208,67:0.24:275
chr15	69676904	.	C	T	454	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=4;HapScore=2;MGOF=12;MMLQ=27;MQ=58.83;NF=17;NR=3;PP=454;QD=24.4385606274;SC=GGAGGGTGAGCGGGCCCTCCG;SbPval=0.58;Source=Platypus;TC=20;TCF=17;TCR=3;TR=20;WE=69676912;WS=69676894;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	69676944	rs11637493	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr15	69677139	rs115116527	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.173;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:195,71:0.27:266
chr15	69683945	rs2242464	C	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.084;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:206,50:0.20:256
chr15	69684050	rs7182493	C	T	4373.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:67,207:0.76:274
chr15	69684376	rs7183388	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	69684389	rs11634798	A	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr15	69684471	rs59606719	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr15	69684477	rs58280155	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr15	69684481	rs112633523	AT	A	315.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr15	69684507	rs11634850	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	69689440	rs1013888	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,69:0.65:106
chr15	69706874	rs3830440	T	TGGGGGCAGGCGTCTCCACTCA	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	69709686	rs3759825	G	A	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.051;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:104,39:0.27:143
chr15	69709748	rs3759826	C	A	2779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.477;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.061;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:61,134:0.69:195
chr15	69728949	rs3825858	A	G	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=1.042;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:297,114:0.28:411
chr15	69729099	.	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-2.164;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	69732483	rs4776448	G	A	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	69732736	rs937724	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.899;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:136,43:0.24:179
chr15	69747675	rs1463911	A	T	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	69754221	rs8041861	T	C	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.942;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:261,113:0.30:374
chr15	70345626	rs1057865	C	T	6782.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.50;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	70346923	rs2228178	C	T	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	70347362	rs4777227	C	A	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	70347816	rs11440222	A	AG	306.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	70348468	rs3817045	G	A	470.94	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr15	70348523	rs2270871	G	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	70349744	rs8036209	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:89,40:0.31:129
chr15	70350457	rs2291982	C	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:67,125:0.65:192
chr15	70351649	rs7176098	C	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr15	70351788	rs2133977	T	C	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:236,133:0.36:369
chr15	70358261	rs141303043	G	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr15	70368432	rs2291986	T	C	3666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-1.108;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:71,169:0.70:240
chr15	70388449	rs71149952	AG	A	3933.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	70960068	rs934005	G	A	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-3.201;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:315,108:0.26:423
chr15	70991925	rs4776525	G	C	3296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.593;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:573,226:0.28:799
chr15	71175296	rs1528828	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	71184278	rs2959174	G	T	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:40,107:0.73:147
chr15	71184495	rs2955035	A	G	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:38,122:0.76:160
chr15	71185837	rs2955037	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.60;ReadPosRankSum=0.277;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	71185853	rs5813612	CTT	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=-0.876;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	71186811	rs1881568	C	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	71193188	.	A	AAT	47	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=47;QD=40.0;SC=AAATTCTCCAAATATAAGATG;SbPval=0.36;Source=Platypus;TC=5;TCF=4;TCR=1;TR=2;WE=71193196;WS=71193178;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr15	71276480	rs3834543	GCAA	G	987.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr15	71341050	rs1713569	G	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.342;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr15	71403406	rs6494895	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	71404745	rs57841474	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.524;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	71535458	rs12440013	G	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr15	72037610	rs2291994	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=2.588;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr15	72040774	rs1872056	C	T	5137.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:115,240:0.68:355
chr15	72050139	rs8026426	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr15	72050181	rs8026307	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:107,53:0.33:160
chr15	72050436	rs924555	T	C	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	72057233	rs2277542	C	A	142.88	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	72057578	rs12442377	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	72103795	rs2742318	T	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,57:0.74:77
chr15	72104450	rs1805022	C	T	4203.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:73,186:0.72:259
chr15	72104798	rs1805023	G	A	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:145,273:0.65:418
chr15	72105928	rs11351249	AC	A	7076.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	72119423	rs116206236	C	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr15	72170599	rs11856568	T	C	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr15	72175950	rs16956367	G	A	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.658;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:69,121:0.64:190
chr15	72191073	rs2415128	T	C	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.300;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:298,130:0.30:428
chr15	72191266	rs2415129	C	T	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.607;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:209,85:0.29:294
chr15	72324975	.	T	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-1.184;QD=11.44;ReadPosRankSum=1.060;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr15	72431883	rs7175792	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.439;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	72432583	rs930871	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:119,38:0.24:157
chr15	72454729	rs897731	C	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	72457551	rs2959944	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	72460339	rs8025939	T	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr15	72462165	rs11072348	A	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr15	72462831	rs7182776	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr15	72533738	rs16956619	T	G	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:49,158:0.76:207
chr15	72543396	rs714808	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr15	72543656	rs2959904	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	72545876	rs1426166	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	72546522	rs116284231	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr15	72546765	rs2912227	A	G	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	72556799	rs11072352	G	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	72557955	rs1426170	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	72559326	rs62022788	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=9.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.329;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr15	72637795	rs4777502	T	C	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:46,155:0.77:201
chr15	72637960	rs2288259	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr15	72638892	rs1800431	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.527;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr15	72640193	rs2303449	G	T	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr15	72640226	rs2303450	T	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr15	72640563	rs74949863	C	T	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.299;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:34,72:0.68:106
chr15	72645352	rs12440768	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr15	72648034	rs10220917	T	G	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.615;QD=16.10;ReadPosRankSum=-0.914;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:18,53:0.75:71
chr15	72859640	.	C	CT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.518;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr15	72864384	.	AT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.166;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr15	72864425	rs182197270	G	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr15	72864578	rs5813687	AT	A	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.956;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr15	72875521	.	G	GT	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.649;QD=1.31;ReadPosRankSum=0.323;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr15	72879653	rs139334001	A	ATTG	1387.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr15	72968748	.	G	GT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=3.135;QD=1.59;ReadPosRankSum=-0.637;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr15	72978996	rs10467946	G	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr15	72987588	rs4777527	G	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,67:0.72:93
chr15	73002035	rs8033604	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr15	73023937	rs12914333	T	C	4792.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:107,222:0.67:329
chr15	73024181	rs9806635	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr15	73028375	rs12324395	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr15	73029052	rs2277597	T	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr15	73048529	rs2304598	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr15	73052840	rs8024644	T	C	5988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.52;ReadPosRankSum=1.393;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:55,155:0.74:210
chr15	73052845	rs8023358	A	G	5787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.14;ReadPosRankSum=2.136;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:51,141:0.73:192
chr15	73067234	rs11634630	T	C	4894.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:95,233:0.71:328
chr15	73076148	rs146134030	G	GC	2745.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:39,102:0.72:141
chr15	73409213	rs3840037	A	AT	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr15	73428224	rs8035499	T	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.266;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.326;QD=4.56;ReadPosRankSum=1.186;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr15	73566942	rs497539	G	A	4234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=-1.724;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:64,190:0.75:254
chr15	73614834	rs529004	T	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr15	73843387	rs12102004	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr15	73848808	rs922687	A	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr15	73851971	rs79100571	A	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	73852298	.	GA	G	31	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5002;HP=5;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=31;QD=31.0;SC=TCAAAGTATTGAAAAATGCTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=73852306;WS=73852288;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr15	73862767	rs75660208	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr15	73982965	rs6495076	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	73994806	rs7173448	C	T	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,74:0.77:96
chr15	73994847	rs7173476	C	A	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr15	73995165	rs111801073	A	C	6489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=1.809;QD=26.93;ReadPosRankSum=-2.418;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:75,166:0.69:241
chr15	73995173	rs11574479	C	T	6248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=1.244;QD=26.82;ReadPosRankSum=-1.857;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,156:0.67:233
chr15	73995431	rs11574480	G	T	10155.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:171,465:0.73:636
chr15	73995588	rs10152662	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr15	73995603	rs10152645	A	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr15	73996101	rs10083681	G	A	8248.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:105,376:0.78:481
chr15	73996359	rs2291014	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:20,59:0.75:79
chr15	74000729	rs2291012	G	C	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=1.117;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:24,78:0.76:102
chr15	74001993	rs11552770	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr15	74003533	rs966378	G	A	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:61,146:0.71:207
chr15	74043274	rs116258173	T	G	9738.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:161,441:0.73:602
chr15	74173638	rs7170291	C	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr15	74176453	rs66619071	GA	G	3194.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	74180702	rs59778825	A	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:30,100:0.77:130
chr15	74180875	rs140293674	GTCCTCCTCCTCCTCT	G	2133.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr15	74180902	.	CTCTTCCTCCTCCTCCTCCTCT	C	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=63.69;MQRankSum=-2.887;QD=2.49;ReadPosRankSum=-2.735;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:122,31:0.20:153
chr15	74181255	rs7170803	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	74219599	rs78803776	T	G	10174.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	74234171	rs8042181	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	74239342	rs77903968	G	A	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	74241986	rs1440102	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	74276228	rs2289413	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr15	74277795	rs10851866	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	74282833	rs3214695	G	GC	1390.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr15	74317043	rs2277599	T	C	799.94	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,35:0.88:40
chr15	74323604	rs80344031	T	A	2736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=1.294;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:37,127:0.77:164
chr15	74325182	rs2304716	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr15	74328116	rs743580	A	G	8142.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:134,366:0.73:500
chr15	74328206	rs743582	G	C	6047.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:130,276:0.68:406
chr15	74355944	rs146117206	C	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=44.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	74355944	.	CGT	TGC	446	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=2;MGOF=13;MMLQ=27;MQ=56.04;NF=19;NR=4;PP=446;QD=21.7159945592;SC=CCAAGTCCAGCGTACAGCCCC;SbPval=0.68;Source=Platypus;TC=25;TCF=20;TCR=5;TR=23;WE=74355954;WS=74355934;set=Platypus	GT:AD:AF:DP	1/1:2,23:0.92:25
chr15	74355946	rs148357440	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=44.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	74421010	rs2279379	C	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.660;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:167,64:0.28:231
chr15	74466151	rs74023444	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=4.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.007;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:134,41:0.23:175
chr15	74466271	rs923118	G	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr15	74472716	rs351242	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:34,95:0.74:129
chr15	74473739	rs736118	C	T	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:76,126:0.62:202
chr15	74476340	rs2277608	G	C	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:45,133:0.75:178
chr15	74483415	rs351228	T	C	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:49,179:0.79:228
chr15	74486444	rs974456	C	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr15	74489883	rs351218	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	74499956	rs351222	G	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:241,87:0.27:328
chr15	74500105	rs12915846	G	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:44,112:0.72:156
chr15	74528985	rs351175	T	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=0.145;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr15	74536285	rs67845844	CA	C	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.624;QD=9.08;ReadPosRankSum=0.610;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr15	74558927	rs440793	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	74560828	rs138360055	T	TG	2028.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.903;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:40,86:0.68:126
chr15	74560831	rs28460010	T	G	3843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=29.34;ReadPosRankSum=0.751;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:29,102:0.78:131
chr15	74572242	rs351165	T	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	74572917	rs351164	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	74574054	rs74023465	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr15	74574208	rs74897549	G	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr15	74611182	rs751528	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.30;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	74611189	rs751527	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	74659535	rs12442401	A	G	880.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.69;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	74659609	rs28681535	G	T	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr15	74703022	rs2075592	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr15	74703929	rs741761	T	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	74706943	rs1046146	G	A	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:69,166:0.71:235
chr15	74708876	rs28362919	G	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr15	74709566	rs2075590	T	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.222;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.357;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr15	74709975	rs2075589	G	A	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.812;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:308,113:0.27:421
chr15	74710305	rs28362914	G	A	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.232;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:178,63:0.26:241
chr15	74710593	rs28362912	C	T	10246.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr15	74711410	rs16968740	G	A	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	74741928	rs61184870	C	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr15	74742468	rs2289188	A	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr15	74753112	rs74025811	A	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.821;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:83,30:0.27:113
chr15	74865017	rs377466587	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.111;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr15	74865646	rs148647541	CAGG	C	2843.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr15	74888196	rs74781061	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	74889853	rs145671041	TAC	T	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=1.357;QD=1.82;ReadPosRankSum=0.422;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr15	74907787	rs77038084	C	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.303;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr15	74918128	rs35200328	ATCC	A	966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.663;QD=8.71;ReadPosRankSum=0.278;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr15	74919593	rs11629749	C	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	74919778	rs56042870	T	C	4086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-1.243;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:94,196:0.68:290
chr15	74927416	rs78266998	G	A	6457.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:151,308:0.67:459
chr15	74948063	rs7497342	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	75015206	rs17861094	A	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:272,96:0.26:368
chr15	75041917	rs762551	C	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	75045692	rs4646427	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.825;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr15	75080872	rs2168519	T	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	75093006	rs34499151	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr15	75093909	rs34866753	G	A	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:29,95:0.77:124
chr15	75105878	rs4886620	G	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.409;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:142,47:0.25:189
chr15	75111152	rs74025850	G	A	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-1.214;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:390,138:0.26:528
chr15	75113083	rs1531163	A	G	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=6.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.408;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:222,70:0.24:292
chr15	75114155	rs61671857	T	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.153;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:121,48:0.28:169
chr15	75114322	rs11636952	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr15	75115895	rs7162232	G	A	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	75116734	rs74025851	A	G	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.861;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.345;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:355,134:0.27:489
chr15	75130015	rs11312224	AG	A	1354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.088;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:230,75:0.25:305
chr15	75131567	rs8039777	C	T	5570.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:86,257:0.75:343
chr15	75131661	rs4886615	A	G	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr15	75134478	rs34945944	C	T	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=3.797;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:253,71:0.22:324
chr15	75135447	rs2290574	T	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	75141129	rs60757109	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.262;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr15	75144543	rs2305667	G	A	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	75145882	rs28582587	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr15	75147126	rs73434500	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr15	75195212	rs74025859	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr15	75305040	rs7174129	A	G	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.408;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:278,97:0.26:375
chr15	75305058	rs60910940	G	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:298,97:0.25:395
chr15	75309170	rs371189916	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.476;QD=2.12;ReadPosRankSum=-0.753;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr15	75310075	rs12593566	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.910;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr15	75310710	rs74023908	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr15	75336729	rs2304899	A	G	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.608;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:513,184:0.26:697
chr15	75498548	rs1466663	A	G	10002.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr15	75499602	rs12591506	C	A	15002.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr15	75499619	rs11072531	T	C	13380.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr15	75499861	rs11072532	G	A	16189.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr15	75499995	rs28509789	T	G	9748.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr15	75503147	rs3743211	G	A	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr15	75518241	rs1994639	G	C	328.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=41.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	75518246	rs1994640	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	75521833	rs6495165	G	C	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	75594160	rs4886678	A	G	2029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.209;MLEAC=2;MLEAF=1.000;MQ=59.26;MQRankSum=3.391;QD=39.80;ReadPosRankSum=-0.208;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr15	75594160	.	ACG	GCA	1439	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=0.9999;HP=1;HapScore=1;MGOF=9;MMLQ=27;MQ=58.92;NF=9;NR=28;PP=1439;QD=40.3369695909;SC=CTGGGGCTGTACGCTGGACTT;SbPval=0.63;Source=Platypus;TC=42;TCF=11;TCR=31;TR=37;WE=75594170;WS=75594150;set=Platypus	GT:AD:AF:DP	1/1:5,37:0.88:42
chr15	75594162	rs4886679	G	A	2029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.407;MLEAC=2;MLEAF=1.000;MQ=59.25;MQRankSum=3.353;QD=40.60;ReadPosRankSum=-0.294;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	75630562	rs143588533	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-3.071;QD=2.39;ReadPosRankSum=1.862;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr15	75630635	rs7166436	A	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr15	75640077	rs114767302	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr15	75640423	rs79244935	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr15	75643635	.	GA	G	31	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=19;HapScore=4;MGOF=48;MMLQ=15;MQ=58.39;NF=3;NR=2;PP=31;QD=13.2;SC=TTTTTTTTTTGAGACAGGGTC;SbPval=0.23;Source=Platypus;TC=15;TCF=5;TCR=10;TR=5;WE=75643643;WS=75643625;set=Platypus	GT:AD:AF:DP	0/1:10,5:0.33:15
chr15	75649326	rs77463819	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,46:0.81:57
chr15	75651022	rs149997575	C	CCCACATGCTGCCCAGCCCATA	3256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=13.056;QD=6.69;ReadPosRankSum=-0.712;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:388,99:0.20:487
chr15	75653333	rs113892152	G	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr15	75653378	rs7174408	T	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	75654915	rs78897298	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr15	75655765	rs34386653	G	GT	231.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr15	75664570	rs4886696	AA	TT	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.159;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.607;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr15	75692303	rs4886699	A	C	6402.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:120,298:0.71:418
chr15	75699523	rs8024276	G	A	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:39,98:0.72:137
chr15	75702754	rs79147131	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.433;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr15	75897646	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.503;QD=1.61;ReadPosRankSum=0.797;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr15	75909933	.	C	CT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.914;QD=1.56;ReadPosRankSum=-0.147;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr15	75916931	rs4886719	T	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=-0.320;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr15	75916940	rs4886720	T	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.60;ReadPosRankSum=-0.916;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr15	75949249	rs112360791	G	GAGC	1543.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr15	75967814	rs1127646	A	G	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr15	75970070	rs8023621	C	T	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:143,58:0.29:201
chr15	75977920	rs62027240	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr15	75979782	rs8030131	G	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.077;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr15	75980112	rs4414463	A	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.365;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:419,109:0.21:528
chr15	75981355	rs80089490	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:103,51:0.33:154
chr15	75981507	rs12900539	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:55,16:0.23:71
chr15	75981983	rs140667860	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:133,54:0.29:187
chr15	75982428	rs7182906	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-0.849;QD=4.61;ReadPosRankSum=0.511;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:95,39:0.29:134
chr15	76019382	rs28567605	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:88,52:0.37:140
chr15	76030993	rs12904654	A	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-4.226;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr15	76031008	rs7181595	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.237;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr15	76031241	rs28533248	G	T	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,46:0.38:122
chr15	76031384	rs28711283	C	T	3939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.379;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:317,126:0.28:443
chr15	76031393	rs28677951	C	T	3587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.752;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:295,108:0.27:403
chr15	76054723	rs8026666	G	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=0.032;QD=2.62;ReadPosRankSum=-1.734;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr15	76067911	rs12101948	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr15	76074518	rs3991352	T	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr15	76076039	rs8026030	G	C	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.063;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:90,35:0.28:125
chr15	76078471	rs2604398	A	G	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:178,76:0.30:254
chr15	76078564	rs2604399	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.049;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.265;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:134,45:0.25:179
chr15	76078723	rs115459123	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:70,184:0.72:254
chr15	76078830	rs2593291	A	C	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.669;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:114,30:0.21:144
chr15	76079069	rs2604400	G	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr15	76084875	rs12708521	C	T	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	76136194	rs2047866	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr15	76168406	rs66475371	C	CAAA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=0.956;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	76175828	rs1868020	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	76182949	rs335713	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	76183093	rs184344390	T	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.059;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr15	76189624	rs335692	A	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	76191644	rs28607641	A	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	76191802	rs335689	G	A	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	76191852	rs335688	T	C	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	76191966	rs335687	T	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	76197071	rs3073843	A	ATCT	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=43.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	76205523	.	A	AT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.013;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr15	76222140	rs335679	G	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	76248427	rs10711025	GT	G	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr15	76298132	rs4886755	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr15	76510036	rs116724809	C	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr15	76510073	rs1533600	G	A	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	76518346	rs11281932	C	CCCTTA	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=31.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	76632907	rs7180257	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.518;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:167,54:0.24:221
chr15	76673785	rs36022476	G	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.929;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:114,42:0.27:156
chr15	76696768	rs3743175	T	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,13:0.24:55
chr15	76797133	rs114364445	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr15	76994239	rs111697913	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr15	76998446	rs113931036	T	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=-2.189;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	77020900	rs80010060	A	G	3650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.395;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:91,173:0.66:264
chr15	77064389	rs66496622	TGAA	T	729.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	77085740	rs3102707	C	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	77096849	rs78555450	A	C	2977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.642;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:72,141:0.66:213
chr15	77150144	rs186713111	C	T	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr15	77154786	rs114705075	C	T	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.379;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:203,88:0.30:291
chr15	77176300	rs113169255	C	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	77231158	rs4886841	C	T	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	77241568	rs1711018	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	77308387	rs7173067	G	A	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:77,156:0.67:233
chr15	77310289	rs113013219	A	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	77310636	rs3812911	G	C	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr15	77310864	rs113386299	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr15	77321707	.	T	C	656.53	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,28:0.88:32
chr15	77322029	rs3935339	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=12.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.332;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	77323009	rs2469237	T	C	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr15	77324880	rs4078354	A	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	77325401	rs181432186	C	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr15	77327859	rs201582038	C	T	8355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.401;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:187,395:0.68:582
chr15	77327971	rs115368425	G	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.544;QD=3.67;ReadPosRankSum=-1.210;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr15	77328108	rs11373069	G	GA	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	77329410	rs145344175	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:37,125:0.77:162
chr15	77344793	rs11737	T	A	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	77347982	rs111689029	T	C	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	77363451	rs11072641	T	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	77406396	rs3743479	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr15	77425252	rs35381299	A	G	277.89	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	77425697	rs192678529	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-1.318;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:97,31:0.24:128
chr15	77472871	rs10519162	G	A	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:93,181:0.66:274
chr15	77764053	rs17471809	G	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.252;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	77771494	rs16968851	T	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,86:0.62:139
chr15	77924745	.	CCCTCCTCCGTTTCCT	C	9119.73	.	AC=2;AF=1.00;AN=2;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr15	77926536	rs9972481	A	G	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	77926576	rs59305775	T	TC	16545.73	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:2,470:1.00:472
chr15	77926792	rs13329323	T	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	77938731	rs72546313	A	AGTCCTGCCTCCCAG	1854.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	78189163	rs148372236	C	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:3,123:0.98:126
chr15	78272273	rs60320634	GC	G	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=15.230;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-12.173;QD=0.50;ReadPosRankSum=-4.728;SOR=2.326;set=HC	GT:AD:AF:DP	0/1:162,21:0.11:183
chr15	78272304	rs28637877	C	T	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-7.921;QD=4.86;ReadPosRankSum=-8.620;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:234,102:0.30:336
chr15	78276660	rs12916320	A	G	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=25.56;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	78369972	rs7176425	G	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	78390414	rs2289524	T	C	6771.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:137,319:0.70:456
chr15	78390824	rs377126819	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:344,158:0.31:502
chr15	78401534	rs3214707	T	TC	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.12;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	78401540	rs12592068	A	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.12;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	78401540	.	AC	CC	74	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=1.0000,1.0000;HP=7;HapScore=4;MGOF=10;MMLQ=24;MQ=65.19;NF=1,3;NR=2,2;PP=21,74;QD=28.281920157;SC=ATGTTCCCCCACCGCATATTC;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3,5;WE=78401548;WS=78401530;set=Platypus	GT:AD:AF:DP	0/1:0,5:1.00:5
chr15	78401540	.	AC	ACC	74	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=1.0000,1.0000;HP=7;HapScore=4;MGOF=10;MMLQ=24;MQ=65.19;NF=1,3;NR=2,2;PP=21,74;QD=28.281920157;SC=ATGTTCCCCCACCGCATATTC;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3,5;WE=78401548;WS=78401530;set=Platypus	GT:AD:AF:DP	0/1:0,3:1.00:3
chr15	78403004	rs1992469	A	G	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	78403179	rs2867986	C	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	78423479	rs8040395	T	C	4253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-0.334;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:83,198:0.70:281
chr15	78423596	rs11547207	A	C	4633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=1.302;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:66,215:0.77:281
chr15	78441769	rs11555541	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	78441796	.	TGGCA	T	51	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=2;MGOF=14;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=51;QD=34.5;SC=GGCCGGCGTGTGGCAGGCAGG;SbPval=1.0;Source=Platypus;TC=11;TCF=2;TCR=9;TR=2;WE=78441807;WS=78441786;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr15	78457242	rs12904700	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr15	78457537	rs11394499	C	CT	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.581;QD=12.68;ReadPosRankSum=-1.237;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr15	78458485	rs3816253	T	C	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=1.437;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:105,57:0.35:162
chr15	78458638	rs2304826	C	T	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:110,170:0.61:280
chr15	78458797	rs2304825	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr15	78466006	rs11072735	G	A	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:88,183:0.68:271
chr15	78466127	rs2304824	T	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	78472157	rs58848105	T	TCA	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr15	78474517	rs6495277	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	78485732	rs79908499	G	A	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr15	78485814	rs28700056	A	G	11194.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr15	78486189	rs2271902	G	A	3208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-0.780;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:71,149:0.68:220
chr15	78556571	rs62007805	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=4.003;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	78556589	rs12898295	C	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.44;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	78556967	.	A	AGCG	1717.73	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr15	78557005	rs28484827	A	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	78557086	rs66489434	GC	G	7530.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.12;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr15	78557720	rs62007832	C	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	78558509	rs2037347	G	A	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr15	78562814	.	ATC	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.769;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr15	78565478	rs7163689	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	78572359	rs9806426	C	G	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	78581892	rs1879153	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	78581938	rs16969675	C	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr15	78587111	rs138711577	TTTG	T	645.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr15	78587910	rs1040262	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	78632830	rs1127472	C	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=3.228;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr15	78633595	rs2139440	T	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	78758677	rs2958720	G	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.415;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr15	78758853	rs2938672	A	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr15	78777312	rs9788758	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=1.489;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr15	78780104	rs2230940	T	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.059;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr15	78786410	rs4887060	A	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr15	78807231	rs148681032	C	CCTCTCT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-2.662;QD=6.90;ReadPosRankSum=1.713;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr15	78807252	rs59105191	A	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-2.485;QD=7.18;ReadPosRankSum=1.222;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr15	78807254	rs146986269	A	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-2.485;QD=7.18;ReadPosRankSum=0.992;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr15	78807256	rs141436446	A	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-2.485;QD=7.16;ReadPosRankSum=0.443;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr15	78834689	rs2292117	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr15	78836631	rs67437837	CTGA	C	758.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:108,28:0.21:136
chr15	78841220	rs8053	T	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.143;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr15	78857896	rs503464	T	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr15	78879242	rs555018	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.674;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	78909452	rs3743075	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.308;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr15	78909480	rs3743074	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:84,23:0.21:107
chr15	78909539	rs3743073	G	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr15	78911261	rs2869547	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	78912943	rs7170068	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr15	78913067	rs66793222	ACAG	A	1947.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:115,57:0.33:172
chr15	78917399	rs1948	A	G	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr15	79045439	rs113168484	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:110,37:0.25:147
chr15	79054900	rs7495616	C	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	79056526	rs3830240	TC	T	113	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	79058572	rs1809421	T	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	79058923	rs1809422	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	79058940	.	GCGC	G	637.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	79058944	.	A	T	646.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.52;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	79059449	rs1810165	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	79065380	rs7177201	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	79065384	rs28577997	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	79065394	rs3743061	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	79065557	rs28450923	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.74;QD=44.21;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	79065562	rs8036224	A	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;QD=44.30;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	79065583	rs28406761	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	79069734	rs7161774	G	T	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	79089007	rs3743057	T	C	13358.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr15	79092603	rs6495329	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	79132814	rs7402877	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,14:0.25:57
chr15	79133026	rs6495341	C	T	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=0.362;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:137,36:0.21:173
chr15	79133038	rs6495342	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:99,29:0.23:128
chr15	79177515	rs78568814	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr15	79178464	rs8039160	T	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr15	79178720	rs78027264	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr15	79183305	rs4778952	T	C	43.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr15	79186584	rs16970207	T	C	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.204;QD=4.16;ReadPosRankSum=-1.555;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:197,81:0.29:278
chr15	79215311	rs2289693	A	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr15	79217690	rs2044226	G	C	11041.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr15	79217808	rs2869820	A	T	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:70,165:0.70:235
chr15	79223681	rs2289699	G	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	79223728	rs142440548	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-2.037;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:155,54:0.26:209
chr15	79224683	rs2289700	C	T	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr15	79224747	rs13345	C	T	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:74,206:0.74:280
chr15	79225813	rs3837715	CT	C	10755.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	79229992	rs145508218	G	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr15	79231518	rs11638844	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-1.667;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr15	79231523	rs35398112	G	GA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.746;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:98,39:0.28:137
chr15	79231616	rs10400902	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr15	79237403	rs67943698	GGA	G	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	79254480	rs4778732	T	A	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	79264097	rs4238514	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	79271428	rs8038472	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.391;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:180,46:0.20:226
chr15	79271707	rs13379704	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.988;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:114,29:0.20:143
chr15	79273098	rs2278650	CC	GT	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,70:0.79:89
chr15	79273184	rs80199659	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	79277150	rs3840034	A	AC	1698.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr15	79277247	rs4778750	A	C	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:92,233:0.72:325
chr15	79277298	rs3803544	T	C	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:100,251:0.72:351
chr15	79277327	rs11855236	G	C	6386.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:118,289:0.71:407
chr15	79277511	rs2230518	A	G	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:76,238:0.76:314
chr15	79277608	rs4778751	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	79288011	rs6495359	A	C	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	79292399	.	GGT	G	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.823;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr15	79310288	rs2304994	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:174,78:0.31:252
chr15	79312330	rs2304993	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr15	79324419	rs2304991	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.503;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:77,29:0.27:106
chr15	79327686	rs736554	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr15	79586361	rs8038778	T	C	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	79586865	rs55824566	G	A	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:337,151:0.31:488
chr15	79606137	rs3825933	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	79606408	rs3784544	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	79614206	rs906440	T	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	79614224	rs8037898	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr15	79614418	rs906439	A	G	11152.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr15	79748603	rs7183867	C	T	5237.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:97,237:0.71:334
chr15	79749447	rs11634652	G	T	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:92,219:0.70:311
chr15	79750307	rs1004724	T	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	79755604	rs2297773	A	G	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr15	80189058	rs71874818	GCGTGCGCGCGCCGGGAGGGGAAA	G	5807.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:37,145:0.80:182
chr15	80191203	rs73474598	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.68;ReadPosRankSum=0.742;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr15	80191343	rs7257	G	A	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.574;QD=3.12;ReadPosRankSum=-0.322;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:149,47:0.24:196
chr15	80214976	rs78016257	GTGC	G	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	80215978	rs7176433	A	G	3868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.273;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:282,117:0.29:399
chr15	80215987	rs7176586	C	A	3780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.585;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:288,113:0.28:401
chr15	80259837	rs148148832	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=0.58;ReadPosRankSum=1.583;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr15	80263345	rs1138358	A	C	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr15	80405098	rs12594035	C	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:261,117:0.31:378
chr15	80413935	rs934003	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.065;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	80414173	rs1522636	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr15	80445512	rs71699670	A	AG	4050.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:73,152:0.68:225
chr15	80445513	.	G	GGGGAGT	1824.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=606;ExcessHet=3.0103;FS=7.291;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.237;QD=8.00;ReadPosRankSum=1.070;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:166,62:0.27:228
chr15	80450328	rs1370276	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	80450389	rs1370275	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	80450459	rs34749737	A	G	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:75,120:0.62:195
chr15	80450485	rs28733633	C	T	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:81,144:0.64:225
chr15	80452075	rs1370274	T	C	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr15	80452268	rs1370273	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	80452886	rs733679	T	G	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	80454745	rs2114716	T	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	80460524	rs1545119	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	80460576	.	G	GT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=4.021;QD=0.96;ReadPosRankSum=2.476;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:104,30:0.22:134
chr15	80465248	rs58363292	GA	G	4088.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	80472431	rs2043691	C	A	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	80690189	rs116102761	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr15	80736696	.	G	GGT	356.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr15	80762526	rs5814026	TC	T,TCC	4989.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;QD=27.42;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:0,48,134:0.26,0.74:182
chr15	80806183	rs11072922	T	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.962;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:81,35:0.30:116
chr15	80845136	rs3924894	CT	TC	1894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-1.697;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:156,58:0.27:214
chr15	80855743	rs4778813	C	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr15	80866470	rs8040980	T	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:64,188:0.75:252
chr15	80867480	rs72732083	G	C	4184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.195;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=1.003;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:87,192:0.69:279
chr15	80867529	rs72732084	T	C	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:55,125:0.69:180
chr15	80873642	rs79914316	C	G	3645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=2.162;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:682,259:0.28:941
chr15	80884171	rs3935130	C	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	80886191	rs8033706	T	C	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	80889548	rs76861207	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.014;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:160,50:0.24:210
chr15	80889699	rs60225999	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=1.823;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr15	80987812	rs62007944	T	C	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	81172064	rs35541581	G	A	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:97,208:0.68:305
chr15	81180256	.	A	C	190.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr15	81212521	rs2271160	T	C	15790.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr15	81212608	rs1553647	G	A	11582.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr15	81216819	rs55811683	G	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr15	81217848	rs2271163	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr15	81234741	rs1553646	C	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	81241281	rs145931381	G	A	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-0.548;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:42,74:0.64:116
chr15	81426539	rs2683255	G	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	81426637	rs78657016	GG	AC	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;JOINED;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr15	81427603	rs80224042	C	T	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=2.589;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:14,56:0.80:70
chr15	81428830	rs8038176	T	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,63:0.62:102
chr15	81440147	rs11395672	C	CA	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr15	81489324	rs8037800	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	81518209	rs980618	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	81571005	rs12101752	G	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	81571067	rs10851949	C	T	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	81582126	rs73501756	T	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	81582425	rs73501758	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	81582868	rs8031107	G	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	81587757	rs17875496	T	A	4229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.845;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:75,196:0.72:271
chr15	81592159	.	G	A	8221.77	.	AC=1;AF=0.500;AN=2;DP=532;set=Intersection	GT:AD:AF:DP	0/1:158,371:0.70:529
chr15	81592802	rs11073001	A	G	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	81592847	rs114719112	C	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr15	81592891	rs11630277	C	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	81598238	rs17875534	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:142,59:0.29:201
chr15	81599038	rs138239545	GCTTTTTCTA	G	4206.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:46,107:0.70:153
chr15	81600510	rs11632978	A	T	5110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.667;QD=14.40;ReadPosRankSum=-1.510;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:108,247:0.70:355
chr15	81600995	rs4238526	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	81610592	rs4503751	A	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr15	81616329	rs74028612	G	A	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:68,203:0.75:271
chr15	81624768	rs4417518	C	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	81625028	rs8031046	C	T	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr15	81631681	rs4489964	C	T	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	81633694	rs116270804	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.502;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr15	81636267	rs7161991	C	T	8380.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr15	81642028	rs9630439	C	T	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	81642064	rs9630440	A	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.89;SOR=1.855;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	81643915	rs9972519	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	81644314	rs9972530	A	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	81648958	rs7165833	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr15	81649001	rs7167034	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	81654537	rs7164804	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr15	81654757	rs5814058	T	TG	1640.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	81664856	rs73434841	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	81665211	rs71708360	CGT	C	379.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=1.511;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	82335444	rs11073028	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	82387776	rs1532750	T	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.306;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:140,51:0.27:191
chr15	82387951	rs1969090	G	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.392;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr15	82431219	rs2457497	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	82443824	rs78664413	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr15	82443939	rs4725	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:133,38:0.22:171
chr15	82444437	rs905450	A	G	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,306:0.99:308
chr15	82450268	rs9944185	C	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.021;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr15	82512429	rs2292189	C	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	82520042	rs116358125	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr15	82523358	rs11073036	G	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.252;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr15	82530630	rs1972460	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:30,71:0.70:101
chr15	82533686	rs11548681	T	G	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.484;QD=3.17;ReadPosRankSum=-0.159;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:274,88:0.24:362
chr15	82544927	rs3902959	C	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	82545214	rs4344697	A	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	82555146	rs149892112	CCTCTG	C	6800.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:61,168:0.73:229
chr15	82558034	rs3858954	G	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	82563991	rs16973457	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:85,31:0.27:116
chr15	82564206	rs79777326	C	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr15	82575317	rs116324279	T	C	5022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.028;QD=15.60;ReadPosRankSum=-1.454;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:84,238:0.74:322
chr15	82575493	rs142677476	TAATA	T	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr15	83221392	rs3850610	C	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.275;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:122,29:0.19:151
chr15	83222444	rs11390316	G	GT	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,11:0.21:52
chr15	83224696	rs1145171	C	T	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	83230904	.	CTT	C,CT	1493.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.983;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.625;QD=12.24;ReadPosRankSum=-0.993;SOR=0.573;set=HC	GT:AD:AF:DP	1/2:17,38,67:0.31,0.55:122
chr15	83231022	rs145838887	C	T	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.520;QD=14.73;ReadPosRankSum=1.045;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:45,106:0.70:151
chr15	83240293	rs783544	A	C	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	83241804	rs77679643	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr15	83241984	rs11336258	AT	A	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.263;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:35,25:0.42:60
chr15	83331155	rs2278355	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	83334016	rs9806591	A	G	5137.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:98,221:0.69:319
chr15	83334128	.	AACACACACACACACACACACACAC	AACACAC,A	1068.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=56;set=Intersection	GT:AF:DP	1/1:1.00:22
chr15	83334245	rs9806343	C	T	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:71,159:0.69:230
chr15	83334419	rs7494860	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	83348420	rs151317499	TTGAG	T	4516.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:59,113:0.66:172
chr15	83395254	rs10468219	G	C	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:58,95:0.62:153
chr15	83428192	rs1108134	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr15	83437607	.	C	A	233.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr15	83455173	.	G	C	2292.77	.	AC=1;AF=0.500;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	0/1:47,108:0.70:155
chr15	83455423	rs62011702	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr15	83521036	rs1256429	C	T	8424.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr15	83528056	.	G	GTT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=1.550;QD=3.52;ReadPosRankSum=-2.065;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	83677515	rs72755956	G	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	83781474	rs1075619	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr15	83790657	rs190032138	G	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr15	83793622	rs17507693	A	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.168;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr15	83832698	rs12440562	T	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.665;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr15	83838062	rs75386403	A	AAAG	717.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr15	83838099	rs11259967	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-1.269;QD=3.18;ReadPosRankSum=-0.095;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr15	83937081	rs11854520	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr15	83953236	rs113285762	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.555;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr15	84373319	rs3079595	C	CAG	2012.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	84473505	rs28504011	A	G	288.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=1.444;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	84473531	rs7179507	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	84488636	rs4483821	A	G	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	84506904	.	G	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-2.154;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:127,58:0.31:185
chr15	84527457	.	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.203;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=393.892;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.961;QD=0.78;ReadPosRankSum=1.691;SOR=9.129;set=HC	GT:AD:AF:DP	0/1:183,95:0.34:278
chr15	84539476	rs17158590	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	84539619	rs4144691	C	G	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	84554018	rs8028931	G	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	84560205	rs144512205	C	T	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:31,124:0.80:155
chr15	84566444	rs7162129	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	84568504	rs6603004	A	G	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr15	84581889	rs12439867	G	A	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr15	84581904	rs4842923	T	C	13324.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr15	84582124	rs4842838	G	T	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr15	84639350	rs2277849	C	T	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	84650990	rs906426	G	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr15	84651185	rs8031704	C	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr15	84651290	rs7176737	T	C	8874.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:4,340:0.99:344
chr15	84657643	rs11629550	T	A	2442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.639;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.195;QD=39.40;ReadPosRankSum=1.037;SOR=0.313;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr15	84657647	rs148124765	T	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=41.64;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	84683428	rs17158450	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr15	84683527	rs73443196	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.699;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr15	84685118	rs146052518	C	CT	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:84,27:0.24:111
chr15	84705405	rs2279925	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr15	84705426	rs2279926	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.212;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr15	84741367	rs76023432	T	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr15	84749820	rs139071720	TTTA	T	2398.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	84753177	rs12437525	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	84784965	rs139915356	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.172;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr15	84790460	.	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-4.555;QD=8.13;ReadPosRankSum=-0.864;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr15	84873130	.	T	TCACCCC	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=32.128;MLEAC=1;MLEAF=0.500;MQ=45.98;MQRankSum=-4.924;QD=2.05;ReadPosRankSum=0.436;SOR=4.906;set=HC	GT:AD:AF:DP	0/1:114,16:0.12:130
chr15	84873141	.	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=29.171;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-4.891;QD=2.05;ReadPosRankSum=0.350;SOR=4.849;set=HC	GT:AD:AF:DP	0/1:116,16:0.12:132
chr15	84950209	rs10152249	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;QD=25.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	85149771	rs2271433	G	T	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	85159397	rs10083683	C	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	85163998	rs2044502	G	C	7233.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr15	85165700	rs114466419	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr15	85175102	rs2121452	G	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr15	85186637	rs510875	G	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	85188839	rs11073619	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:349,124:0.26:473
chr15	85188994	rs2271432	T	C	17942.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr15	85191274	rs7169629	C	G	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	85198362	rs1107179	G	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	85200754	rs2292462	G	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	85235757	rs12900890	C	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	85259053	rs6496355	C	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	85328159	rs75940609	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr15	85333953	rs2241645	A	G	12584.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr15	85341859	rs8182086	G	A	11911.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:242,557:0.70:799
chr15	85360004	rs55736017	A	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=-0.609;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:5,34:0.87:39
chr15	85360101	rs11857356	T	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	85370597	rs891286	C	G	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	85382193	rs1896864	C	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	85383839	rs3803406	G	A	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	85401259	rs306197	C	T	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	85401419	rs167379	T	C	6011.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	85402431	rs2289141	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr15	85402610	rs34122391	G	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.526;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:114,47:0.29:161
chr15	85407564	rs2289138	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	85411692	rs3748380	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr15	85432030	rs17222302	T	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-1.402;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:35,85:0.71:120
chr15	85432159	.	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:18,57:0.76:75
chr15	85438102	.	G	C	1443.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr15	85438118	rs7166433	T	G	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	85438132	rs7166440	T	C	6439.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	85447220	rs1545470	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr15	85448684	rs2290270	G	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr15	85448906	rs2290269	C	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:25,90:0.78:115
chr15	85451818	rs149982746	G	GC	326.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:79,25:0.24:104
chr15	85452088	.	G	A	147.77	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	85461898	rs1562885	G	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr15	85467207	rs3825875	T	C	6181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.335;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:136,289:0.68:425
chr15	85469711	rs2343674	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.863;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr15	85476441	rs2305367	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:357,151:0.30:508
chr15	85478111	rs74024765	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=1.382;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	85478153	rs7163966	G	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	85478410	rs2242048	A	G	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr15	85478573	rs8187779	C	A	6744.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:139,300:0.68:439
chr15	85487960	rs11479919	GC	G	16737.73	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr15	85488158	rs74024766	C	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr15	85488348	rs17222414	C	G	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:60,173:0.74:233
chr15	85488572	rs8025045	T	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	85607563	rs11073916	G	A	2874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.496;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:53,135:0.72:188
chr15	85607670	rs11073917	G	T	2754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-1.825;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:65,130:0.67:195
chr15	85620198	.	G	A	207.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	85632728	.	A	AT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.911;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr15	85633868	rs8029977	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:91,43:0.32:134
chr15	85652486	rs2304420	G	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr15	85656568	rs2304422	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	85658595	rs56912258	A	AG	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.869;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr15	85659150	rs71466073	C	CA	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.722;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:61,42:0.41:103
chr15	85679984	rs11073962	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	86029097	rs11856869	C	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr15	86064909	rs1483581	T	C	376.28	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr15	86077164	rs115105465	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr15	86077189	rs2279168	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr15	86087212	rs7162720	C	T	11929.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:2,454:1.00:456
chr15	86087309	rs2291049	T	C	10290.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr15	86098507	rs7180143	G	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	86098647	rs7164821	T	C	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr15	86122654	rs2061821	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr15	86122779	rs2061822	T	C	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	86122916	rs2061823	T	C	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	86123019	rs2061824	C	T	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	86123085	rs56156165	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:90,39:0.30:129
chr15	86123833	rs4075256	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	86123924	rs4075255	C	T	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	86123988	rs4075254	G	A	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	86124419	rs4843073	C	T	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	86124483	rs4843074	C	G	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	86124555	rs4843075	G	A	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	86124946	rs7162168	T	C	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr15	86124968	rs11633087	G	A	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:4,314:0.99:318
chr15	86125031	rs7178065	G	A	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr15	86129201	rs931082	T	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	86181286	rs201112050	A	AT	167.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.522;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	86181684	rs12593544	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	86182670	rs16942564	G	A	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:35,124:0.78:159
chr15	86182856	rs35727345	C	CT	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.42;ReadPosRankSum=-0.541;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	86189006	rs71468130	G	GT	230.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-1.198;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr15	86253768	rs8037947	T	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	86253911	rs8038249	T	G	6925.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr15	86259233	rs71141478	C	CT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.245;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr15	86260700	rs3765096	C	T	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	86261128	rs79813743	C	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr15	86269530	rs74336663	T	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:32,79:0.71:111
chr15	86278174	rs2241267	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	86278479	rs16943741	A	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	86284817	rs13511	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	86287910	rs11073517	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr15	86313048	rs2614657	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.348;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:144,47:0.25:191
chr15	86313782	rs372186220	C	T	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:90,238:0.73:328
chr15	86368835	rs4627292	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	86368898	rs4414449	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	86368959	rs4577031	A	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	86697596	rs7161846	G	C	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:74,159:0.68:233
chr15	86800209	rs1353578	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	86806029	rs1566088	C	T	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	86807542	rs10520617	C	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr15	86807761	rs10520618	A	G	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:152,81:0.35:233
chr15	86807843	rs11857527	T	C	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:89,152:0.63:241
chr15	86807884	rs11856833	A	C	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:71,125:0.64:196
chr15	86809807	rs8041327	C	T	292.22	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr15	86814654	rs11852354	T	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	86814866	rs11858435	A	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr15	86838497	rs9630451	C	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.817;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:148,33:0.18:181
chr15	86940622	rs4362360	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr15	86940673	rs1367647	C	T	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:53,121:0.70:174
chr15	87097468	rs9788743	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	87099370	rs73459654	A	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.230;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr15	87099537	rs752270	T	C	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	87217613	rs8028043	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	87531281	rs1006030	A	C	3232.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:49,152:0.76:201
chr15	88522552	rs28562651	A	C	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,129:0.68:191
chr15	88576185	rs2229910	G	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.678;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:178,47:0.21:225
chr15	88679785	rs1863480	G	A	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	88690736	rs66493620	CCTTCTT	CCTT,C	1205.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=86;set=Intersection	GT:AF:DP	1/1:1.00:31
chr15	89056040	rs13835	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=0.914;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr15	89071124	rs10591795	AAAC	A,AAACAAC	1703.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;QD=38.72;SOR=1.662;set=HC	GT:AD:AF:DP	1/2:0,32,12:0.73,0.27:44
chr15	89154966	rs7170666	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	89182596	rs3200942	A	G	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	89182693	rs61733732	C	T	7901.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:154,366:0.70:520
chr15	89195526	rs1137166	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:113,50:0.31:163
chr15	89383173	rs114283244	C	T	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:71,176:0.71:247
chr15	89386543	rs11324188	AG	A	3899.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=30.95;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	89390422	rs186480894	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.20;ReadPosRankSum=-1.055;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr15	89390424	rs191413025	G	A	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.65;ReadPosRankSum=-1.112;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr15	89390433	rs114350931	CG	AT	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.938;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.74;ReadPosRankSum=-1.626;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr15	89390559	rs34957282	G	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:42,144:0.77:186
chr15	89390574	rs34637731	G	A	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:45,145:0.76:190
chr15	89391160	rs2272023	C	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr15	89391256	rs57669733	A	G	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:76,198:0.72:274
chr15	89391378	rs75871541	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr15	89392745	rs1568116	T	C	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	89392786	rs34616796	G	A	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:71,223:0.76:294
chr15	89392802	rs35652696	C	T	5814.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:80,257:0.76:337
chr15	89398330	rs3743399	G	A	17846.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr15	89401109	rs4932439	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	89401362	rs34124958	G	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:64,97:0.60:161
chr15	89401814	rs34546634	G	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:30,79:0.72:109
chr15	89401989	rs35061438	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr15	89402051	rs1042630	A	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr15	89402239	rs1042631	T	C	9239.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr15	89403776	rs111239442	G	GCTCAGGCTT	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.655;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr15	89411369	rs28458331	A	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.973;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:68,35:0.34:103
chr15	89417238	rs1126823	A	G	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	89417629	rs2280465	G	A	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	89421327	rs2280463	A	G	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr15	89421405	rs7182726	G	A	12719.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr15	89422286	rs3809574	C	T	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr15	89423749	rs875024	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	89423828	rs75675606	C	T	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.326;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:96,38:0.28:134
chr15	89424022	rs55782943	A	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	89424581	rs938605	A	G	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	89425038	rs76379461	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.172;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr15	89425085	rs79533929	C	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:33,7:0.17:40
chr15	89430506	rs3743395	C	T	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:61,136:0.69:197
chr15	89436167	rs59440069	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:54,15:0.22:69
chr15	89436244	rs8024779	T	C	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	89436295	rs8039131	G	A	6535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=1.008;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:127,310:0.71:437
chr15	89436375	rs58786421	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:124,57:0.31:181
chr15	89444760	rs2015495	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	89449137	rs3743388	C	G	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,103:0.70:147
chr15	89450546	rs1878327	C	T	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr15	89450587	rs1878326	G	T	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	89456342	rs8033625	C	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	89456356	rs3743387	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr15	89456544	rs4945	G	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.589;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr15	89698538	rs7171974	A	G	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr15	89718934	rs145148495	TTCTC	T	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr15	89731347	rs2239288	G	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	89731564	rs28565281	T	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr15	89736558	rs6496562	T	C	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	89754954	rs950541	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr15	89758552	rs4932483	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr15	89761664	rs3825991	C	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr15	89761711	rs16942871	C	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr15	89762276	rs3743384	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=1.262;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	89804111	rs16942918	G	A	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	89805189	rs3217022	C	CTG	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr15	89806710	rs1981623	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.002;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:138,36:0.21:174
chr15	89806721	rs1981624	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.100;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:139,36:0.21:175
chr15	89807891	rs116005173	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	89811482	rs7497351	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	89811543	rs7496308	G	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	89811789	rs151141462	CTT	C	1768.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr15	89816541	rs72300014	TA	T	242.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.244;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr15	89816543	.	A	T	171.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.857;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr15	89817689	rs11073853	G	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	89821910	rs16942931	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:82,28:0.25:110
chr15	89821950	rs34405660	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:28,95:0.77:123
chr15	89824944	rs8027937	C	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:114,51:0.31:165
chr15	89826301	rs57172654	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr15	89826496	rs9806604	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	89837139	rs11857960	G	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:72,24:0.25:96
chr15	89838236	rs7183618	G	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	89847030	rs79223348	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.516;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	89848733	rs2108599	C	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,16:0.22:73
chr15	89856047	rs11321073	TA	T	238.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.140;QD=14.92;ReadPosRankSum=-0.589;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	89856250	rs57899063	G	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.657;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:162,63:0.28:225
chr15	89857711	rs71464462	A	ATACAAG	2198.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	89858319	rs115002048	C	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr15	89858542	rs34557339	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:72,185:0.72:257
chr15	89860157	rs3176241	G	A	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:27,128:0.83:155
chr15	89860559	rs2307454	T	C	1044.31	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,46:0.90:51
chr15	89863928	rs2307449	T	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	89864316	rs2307433	G	GCTAC	8143.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	89864614	rs16943050	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.404;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr15	89867154	rs2072267	A	G	7164.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr15	89867623	rs3176193	CA	C	898.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	89871499	rs3176174	T	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	89872343	rs200056162	TGAG	T	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:80,30:0.27:110
chr15	89876236	rs2283430	C	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	89876610	.	G	A	2538.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:31,112:0.78:143
chr15	89876827	rs41550117	T	TTGC	2944.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:93,139:0.60:232
chr15	90020188	rs10520683	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr15	90020238	rs12101836	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	90020916	rs73468553	G	A	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:93,249:0.73:342
chr15	90022829	rs56312001	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr15	90022837	rs2289352	C	T	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr15	90026485	rs4932134	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr15	90029573	rs113137908	G	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=5.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.046;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:140,43:0.23:183
chr15	90029795	rs59120813	CAGAGAGAGAGAGAGAG	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.185;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr15	90029830	.	A	AGAGAGT	987	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=27;MQ=57.9;NF=4;NR=47;PP=987;QD=19.4117647059;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.73;Source=Platypus;TC=80;TCF=8;TCR=72;TR=51;WE=90029841;WS=90029768;set=Platypus	GT:AD:AF:DP	1/0:29,51:0.64:80
chr15	90118778	rs115500294	C	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.860;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:72,27:0.27:99
chr15	90119614	rs11855211	G	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr15	90125796	rs75652548	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr15	90126121	rs10775247	C	T	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:82,183:0.69:265
chr15	90128799	rs893724	T	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	90128834	rs11639246	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr15	90128966	rs11629584	C	T	6134.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:67,272:0.80:339
chr15	90129188	rs1540504	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	90129227	rs1540503	A	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	90129259	rs8024752	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr15	90135172	rs35892197	C	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr15	90135196	rs8041127	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	90135432	rs34494298	A	G	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.65;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	90135432	.	ATAT	GTAC,GTAT	733	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=8,26;NR=14,49;PP=246,733;QD=13.6121761301;SC=TATCTCTTGAATATTGATTAT;SbPval=0.52;Source=Platypus;TC=75;TCF=26;TCR=49;TR=22,75;WE=90135443;WS=90135422;set=Platypus	GT:AF:DP	0/1:0.29:75
chr15	90135435	rs76527829	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.451;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:93,33:0.26:126
chr15	90138670	rs8042146	C	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	90144851	rs4932233	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	90144894	rs4932234	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	90144944	rs4244876	G	A	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:31,103:0.77:134
chr15	90161355	rs2289486	G	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	90161461	rs8026550	G	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:123,61:0.33:184
chr15	90168108	rs894157	C	T	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	90172035	rs78862745	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.897;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:141,36:0.20:177
chr15	90172133	rs12914042	C	G	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr15	90172419	rs143394914	GGGGTGGGGGCTGTGGGCTGGGT	G	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=19.77;ReadPosRankSum=-1.245;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr15	90172945	rs75760994	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.385;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr15	90173469	rs78984448	C	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.441;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr15	90173734	rs35820949	C	CAG	776.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=60.77;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr15	90174789	rs9672286	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr15	90174824	rs12900805	C	T	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:54,124:0.70:178
chr15	90174955	rs9672296	C	T	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:76,126:0.62:202
chr15	90176073	rs3803530	C	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr15	90176239	.	T	TAGGGAGGGAGGGAGGG	5109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=7.629;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.003;QD=25.81;ReadPosRankSum=-1.155;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:73,125:0.63:198
chr15	90176432	rs3803531	T	G	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	90177159	rs11633151	C	T	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:108,214:0.66:322
chr15	90188514	rs894159	A	G	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	90190048	rs1110060	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	90190947	rs112333674	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:144,62:0.30:206
chr15	90191827	rs8037349	T	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	90192905	rs4932240	T	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	90193229	.	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:18,59:0.77:77
chr15	90195765	rs11630003	AA	GG	12945.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr15	90195868	rs145049849	T	C	8239.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:137,389:0.74:526
chr15	90195946	rs113881220	C	T	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.059;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:265,95:0.26:360
chr15	90195967	rs8179066	C	G	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr15	90211047	rs894162	A	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	90213134	rs2304794	T	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	90213229	rs6496589	G	C	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	90214948	rs1077903	C	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr15	90229811	rs141631225	T	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr15	90273070	rs12148067	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:67,21:0.24:88
chr15	90274756	rs35502270	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:181,74:0.29:255
chr15	90278683	rs78188422	T	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr15	90281087	rs75510286	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.558;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr15	90281381	rs35017767	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:192,94:0.33:286
chr15	90281452	rs35389334	G	A	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=1.268;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:107,49:0.31:156
chr15	90286448	rs75562394	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:80,27:0.25:107
chr15	90293776	rs2305441	A	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	90293794	rs2305440	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr15	90294259	rs114552825	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.302;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr15	90294306	rs6496598	C	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.204;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr15	90308061	rs34284515	T	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr15	90308110	rs34936212	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-1.321;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr15	90308166	rs72754547	A	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr15	90308193	rs199847621	AG	A	344.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=2.357;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr15	90308231	rs62023459	A	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	90308253	rs62024160	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	90308305	rs62024161	T	C	266.18	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	90320000	rs28462216	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.735;QD=2.40;ReadPosRankSum=-1.522;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:238,63:0.21:301
chr15	90320120	rs200021459	GAGGGGCAGGGGCAAGGGCAGGGGC	G	1708.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr15	90320146	rs28546919	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=-2.677;QD=2.49;ReadPosRankSum=0.811;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr15	90328551	rs10584	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:136,47:0.26:183
chr15	90328774	rs71464487	A	AAC	899.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr15	90328821	rs12324351	A	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.137;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr15	90340666	rs3214806	C	CT	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr15	90340719	rs893615	G	A	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	90340725	rs3934	A	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	90344471	rs186405489	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr15	90344575	rs116745219	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr15	90346335	rs7169049	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr15	90347331	rs55977698	G	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-0.502;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr15	90347783	rs17240240	C	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.666;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:186,73:0.28:259
chr15	90347814	rs17240268	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-1.711;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:129,49:0.28:178
chr15	90349461	rs41276922	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-4.038;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:221,59:0.21:280
chr15	90349558	rs25653	C	T	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr15	90393949	rs11435035	C	CT	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=8.55;ReadPosRankSum=1.070;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr15	90414642	rs3759831	C	G	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.16;ReadPosRankSum=-0.725;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,79:0.86:92
chr15	90420673	rs12440156	G	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:24,77:0.76:101
chr15	90437293	rs28677806	G	C	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:85,196:0.70:281
chr15	90611818	rs75398740	C	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,67:0.39:172
chr15	90623052	rs2970357	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr15	90627616	rs60147683	T	C	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	90631924	rs144712130	C	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.532;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:167,52:0.24:219
chr15	90634684	rs11316815	CG	C	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.713;QD=4.58;ReadPosRankSum=-0.978;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:89,31:0.26:120
chr15	90634941	rs10852126	A	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.226;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr15	90760810	rs74037028	C	T	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:92,243:0.73:335
chr15	90760991	rs1543116	T	C	2651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.577;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:563,188:0.25:751
chr15	90762951	rs3833824	A	AG	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.400;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr15	90763267	rs8033071	T	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:45,87:0.66:132
chr15	90764096	rs74037030	T	C	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=0.181;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr15	90764104	rs74037031	A	G	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.303;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.75;ReadPosRankSum=-0.127;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr15	90764202	rs7174036	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:123,51:0.29:174
chr15	90764203	rs3825998	C	A	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:51,123:0.71:174
chr15	90764348	rs3825999	C	G	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-3.149;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:213,86:0.29:299
chr15	90764359	rs3826001	T	G	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	90765093	rs66795544	CG	C	2017.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	90765104	rs35147120	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	90766754	rs908048	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	90768156	rs1040083	A	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	90768959	rs908044	A	C	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,246:0.99:248
chr15	90769203	rs151047936	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=2.112;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr15	90771704	rs3751656	G	A	5436.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:112,252:0.69:364
chr15	90771750	rs3751655	T	G	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	90773801	rs74037064	T	C	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=1.106;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,50:0.71:70
chr15	90774348	rs34645714	C	T	5116.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:97,225:0.70:322
chr15	90775643	rs4451921	G	A	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	90776984	rs8025610	G	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.128;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:68,32:0.32:100
chr15	90784053	rs12901778	A	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	90784207	rs7166441	A	G	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr15	90784250	rs7171194	T	C	8480.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr15	90784930	rs10152994	C	A	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	90785060	rs10153004	C	T	8278.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	90794757	rs4357917	T	G	7904.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr15	90796469	rs143191447	CTG	C	2544.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr15	90800439	rs147887110	C	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.811;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:274,79:0.22:353
chr15	90800552	rs59553865	A	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr15	90800712	rs60877323	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr15	90801248	rs2048706	C	A	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:23,87:0.79:110
chr15	90805084	rs12592600	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	90805262	rs56151832	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.345;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:148,60:0.29:208
chr15	90805384	rs138900183	A	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.193;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:116,33:0.22:149
chr15	90806150	rs141761531	G	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-1.378;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:75,25:0.25:100
chr15	90806182	rs80093118	C	G	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:49,125:0.72:174
chr15	90807335	rs116633435	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr15	90808848	rs150429638	C	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr15	90809633	rs9635390	G	A	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr15	90818400	rs4533265	A	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	90818533	rs114112083	G	A	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:48,163:0.77:211
chr15	90818753	rs115783189	T	G	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.451;QD=3.21;ReadPosRankSum=0.315;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:315,100:0.24:415
chr15	90818827	rs4595780	G	A	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr15	90892293	rs2589973	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr15	90892585	rs7162211	G	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr15	90897885	rs8042825	G	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr15	90897952	rs8023776	C	T	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr15	90898527	rs16944254	C	T	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:45,113:0.72:158
chr15	90901969	rs16944263	C	T	164.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	90902172	rs16944267	C	T	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:33,93:0.74:126
chr15	90903204	rs16944270	G	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr15	90903311	rs2589957	A	G	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:62,146:0.70:208
chr15	90931457	rs2589941	C	T	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:50,160:0.76:210
chr15	90969335	rs2256388	G	T	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:39,107:0.73:146
chr15	90982482	rs7177137	A	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr15	90982756	rs6496675	C	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr15	91009484	rs2074585	G	A	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	91010776	rs1505936	T	C	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr15	91017232	rs1145325	G	A	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	91017274	rs10657378	T	TTTC	2221.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:55,103:0.65:158
chr15	91026477	rs8040585	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.68;ReadPosRankSum=-0.967;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	91030640	rs3833031	GTGC	G	2229.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr15	91034559	rs6496679	C	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,50:0.72:69
chr15	91040725	rs2301832	A	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr15	91043192	rs72311245	ATGTTTTGTTT	A,ATGTTTTGTTTTGTTT	1734.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/2:0.23,0.77:43
chr15	91073235	rs139499011	G	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-1.706;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr15	91083353	rs8033595	G	A	8048.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	91141810	.	A	C	43	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=27;MQ=60.0;NF=1;NR=4;PP=43;QD=15.5542425094;SC=AGATCCTAACATGAGTGTCTT;SbPval=0.73;Source=Platypus;TC=17;TCF=4;TCR=13;TR=5;WE=91141818;WS=91141800;set=Platypus	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	91160996	rs111569950	C	CA	634.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr15	91161097	.	C	CT	2220.73	.	AC=1;AF=0.500;AN=2;DP=168;set=Intersection	GT:AD:AF:DP	0/1:45,119:0.73:164
chr15	91168976	rs3743405	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:64,23:0.26:87
chr15	91309984	rs28385036	A	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-2.044;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr15	91312823	rs3815003	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=2.970;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr15	91326099	rs2227935	C	T	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:32,99:0.76:131
chr15	91337479	rs2227933	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.742;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr15	91354521	rs7167216	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr15	91358271	rs10685387	G	GGAA	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr15	91418910	rs75999568	G	A	358.80	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr15	91419432	rs11372849	T	TC	2485.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:29,89:0.75:118
chr15	91420003	rs76697532	G	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr15	91420973	rs1573643	T	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:25,79:0.76:104
chr15	91421283	rs1573644	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr15	91422543	rs8039305	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr15	91423543	rs6224	G	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr15	91424574	rs6226	G	C	25540.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,978:1.00:978
chr15	91428290	rs11539637	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr15	91428589	rs7183988	T	G	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.474;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:226,65:0.22:291
chr15	91428636	rs7177338	G	A	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.912;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:276,83:0.23:359
chr15	91430436	rs2071383	T	C	16929.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr15	91430617	rs2071384	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:81,22:0.21:103
chr15	91432483	rs77665645	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr15	91432522	rs75665339	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr15	91435172	rs2677734	G	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:55,130:0.70:185
chr15	91435199	rs180690811	G	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:72,177:0.71:249
chr15	91436224	rs186697894	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:19,74:0.80:93
chr15	91436488	rs376099256	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.681;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:121,43:0.26:164
chr15	91436765	rs2856849	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr15	91447686	rs2238340	G	A	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr15	91449015	rs2072078	A	G	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:84,180:0.68:264
chr15	91450441	rs2677744	G	A	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr15	91452595	rs2106673	A	G	3615.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:86,175:0.67:261
chr15	91455618	rs6496737	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr15	91456100	rs79792206	T	G	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.338;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:217,89:0.29:306
chr15	91456102	rs1266492	T	C	4625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-0.620;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:92,214:0.70:306
chr15	91459540	.	G	A	516.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr15	91461305	rs1266484	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr15	91475265	rs111756313	C	T	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:69,215:0.76:284
chr15	91482935	rs12440774	G	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	91483520	rs72630486	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr15	91485730	rs115978927	C	G	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:56,141:0.72:197
chr15	91489802	rs2304939	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	91491206	rs10635983	C	CCT	3938.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	91491216	rs2304940	T	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr15	91491760	rs2304941	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr15	91492034	rs28406911	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.009;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-0.765;QD=7.04;ReadPosRankSum=-0.956;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr15	91492100	rs2001749	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-1.349;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	91492877	rs749938	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr15	91493334	rs8032947	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr15	91496126	rs8039664	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr15	91496242	rs8041035	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:130,64:0.33:194
chr15	91500296	rs10852140	T	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	91503049	rs6496741	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.260;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr15	91503752	rs1867220	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	91504078	rs113379049	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr15	91504181	rs3743451	G	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr15	91504819	rs75775767	C	T	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=0.209;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr15	91505000	rs111317614	CAT	C	1584.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,43:0.41:104
chr15	91510336	rs59975379	C	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:85,28:0.25:113
chr15	91512509	rs145838057	A	AC	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr15	91513597	rs111722846	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.358;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr15	91513832	rs139256619	GGGA	G	2978.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	91517691	rs7168618	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr15	91517780	rs12898311	G	C	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr15	91523713	rs1867226	C	G	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.896;QD=16.24;ReadPosRankSum=-1.107;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:30,78:0.72:108
chr15	91523763	.	T	TTG	335.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.60;MQRankSum=0.944;QD=18.65;ReadPosRankSum=1.016;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr15	91524841	rs7172758	G	T	11130.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr15	91525197	rs2301826	C	T	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	91525318	rs11857612	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr15	91527451	rs8031684	T	A	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:32,83:0.72:115
chr15	91543131	rs16945153	T	A	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.826;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:243,99:0.29:342
chr15	91543761	rs11073964	C	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr15	91545463	rs79939036	T	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.756;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr15	91546497	rs4244883	T	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	91548575	rs112056441	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-2.422;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr15	91549511	rs59910084	TGGGGCCCACAGCCTGGTATAAGCAG	T	1700.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	91550232	rs59648701	G	A	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:62,137:0.69:199
chr15	91550953	rs3743447	C	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr15	91550983	rs57941827	T	C	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr15	91560078	rs873130	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr15	91560133	rs67954926	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr15	91560860	rs7179329	G	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr15	91769465	rs2073967	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr15	91795758	rs16945457	A	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr15	92293742	rs113356190	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=2.88;ReadPosRankSum=1.141;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr15	92293846	rs113446566	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=21.105;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=9.02;ReadPosRankSum=3.575;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr15	92293868	.	G	GTCATGGGGACAGCGACGGTAC	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=26.511;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-2.098;QD=11.14;ReadPosRankSum=2.675;SOR=0.004;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr15	92293882	rs377140320	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92293887	.	T	A	107.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92293889	.	G	A	107.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92293891	.	G	A	107.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92293894	.	G	A	107.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92293902	.	T	A	107.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.76;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	92397106	rs368016879	AGCG	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.403;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:112,13:0.10:125
chr15	92397670	rs7173207	C	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.647;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr15	92432263	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.457;QD=5.99;ReadPosRankSum=-2.671;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	92432419	rs75130046	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.487;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:172,60:0.26:232
chr15	92432549	rs77947211	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.463;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr15	92638193	rs2286355	G	A	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:57,123:0.68:180
chr15	92638326	.	GCCTCT	G	562.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.51;ReadPosRankSum=-0.056;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr15	92638331	.	T	TGAG	568.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=-0.519;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	92638332	.	GT	G	587	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=4;MGOF=5;MMLQ=27;MQ=60.0;NF=0;NR=5;PP=587;QD=126.0;SC=CCCTGCCTCTGTAGCTGGGGC;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=5;WE=92638340;WS=92638317;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	92638333	.	T	TG	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-0.446;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr15	92647645	rs1517618	G	C	14318.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr15	92647834	rs917355	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr15	92663630	rs6496893	A	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	92669184	rs8033892	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr15	92714879	rs2240589	C	T	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	92715131	rs2270061	A	T	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	92715167	rs2270060	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr15	92937268	rs3743365	G	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	92937276	rs3743364	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	92987938	rs2305561	C	G	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.184;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:280,102:0.27:382
chr15	92988165	rs11637874	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,36:0.35:102
chr15	93007302	.	C	CTT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.423;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr15	93015427	rs1455773	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:49,122:0.71:171
chr15	93016128	rs13380006	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:42,107:0.72:149
chr15	93043545	rs7178722	T	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	93198513	rs503112	C	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr15	93198671	rs501381	A	G	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	93198678	rs68056278	TTGGAGC	T	5573.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	93198784	rs2438194	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	93306082	.	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.084;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:143,46:0.24:189
chr15	93306348	rs8032507	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	93306367	rs10636472	G	GA	274.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.140;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=0.672;SOR=0.132;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr15	93306401	.	C	CTTT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.96;ReadPosRankSum=0.328;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	93306602	rs11634113	TG	CA	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	93306644	rs28493166	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.46;QD=25.36;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	93306681	rs12594947	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.26;QD=45.14;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	93306688	rs12910258	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.36;QD=43.30;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	93339219	rs7164758	T	C	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:68,184:0.73:252
chr15	93339701	rs28575385	A	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,75:0.72:104
chr15	93472081	rs145139295	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr15	93487854	rs1320819	G	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	93492086	rs80212944	T	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.211;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:130,43:0.25:173
chr15	93496874	rs1371390	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	93510603	rs4777755	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	93510828	rs144172255	GT	G	219.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.189;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr15	93515798	.	G	GAGGGTCTTAATTTTTACTT	70.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=23.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	93521604	rs11074121	A	G	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	93521651	rs11074122	T	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	93522312	rs2272461	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	93540453	.	A	C	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=1.163;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:34,93:0.73:127
chr15	93543956	rs12591124	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	93552330	rs12915582	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	93563661	rs964034	G	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	93567526	rs28558199	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr15	93588336	rs4238485	A	C	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr15	93595123	rs59619993	C	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr15	93595855	rs1997382	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.447;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr15	93609398	rs114371784	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr15	93609617	rs4778090	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:82,38:0.32:120
chr15	93616283	rs112633977	A	AAGG	1177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=4.248;QD=6.20;ReadPosRankSum=-0.679;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:148,42:0.22:190
chr15	93616903	rs2091635	T	C	4241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.910;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:625,266:0.30:891
chr15	93617107	rs11854629	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	93844616	rs12914371	T	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr15	93844762	rs12909691	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.529;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:113,40:0.26:153
chr15	93844836	rs34239935	G	A	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.328;QD=8.45;ReadPosRankSum=-1.321;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:209,77:0.27:286
chr15	93844843	rs12914719	T	A	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=0.012;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:218,74:0.25:292
chr15	93844947	rs41446745	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:95,29:0.23:124
chr15	94304132	rs12905790	C	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	94304189	rs12910750	T	C	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr15	94841380	.	GT	G	174.73	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	94841389	rs78144941	T	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.465;QD=12.25;ReadPosRankSum=-1.527;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	94841672	rs143256791	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,21:0.24:87
chr15	94841991	rs370876212	GTC	G	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.294;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr15	94857347	rs294553	T	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	94858167	rs74424819	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.698;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr15	94858980	rs8024196	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr15	94910779	.	G	T	581.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr15	94927493	rs3217405	AT	A	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	94942497	rs2289009	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	94945324	rs6497203	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr15	94945719	rs7178698	G	T	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.117;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:291,103:0.26:394
chr15	94986276	.	CTTTTT	C	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=1.489;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr15	95022146	rs150441534	C	CGAG	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	96831368	.	G	A	334.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:81,26:0.24:107
chr15	96869695	rs73471280	G	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:12,67:0.85:79
chr15	96875270	rs142499350	C	T	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	96876611	rs7173047	T	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	96880533	.	TC	T	742.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.875;QD=21.22;ReadPosRankSum=2.362;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr15	96880535	.	TTTTTC	T	742.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.875;QD=21.22;ReadPosRankSum=2.310;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr15	97327420	rs74035978	C	A	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.376;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:195,74:0.28:269
chr15	98301845	rs2048115	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	98302002	rs143322276	TAAC	T	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	98417093	rs74034156	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.035;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr15	98504100	rs4965046	G	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr15	98504326	rs12101554	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr15	98508735	rs55823836	C	T	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	98509063	rs61281998	C	CT	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	98512622	rs5814833	CT	C	1655.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:5,84:0.94:89
chr15	98513086	rs201375946	CT	C	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.287;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:13,55:0.81:68
chr15	98995052	rs56374714	G	GT	5140.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	98995081	rs12101356	A	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	99023968	rs4528551	T	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:88,36:0.29:124
chr15	99442595	rs3743256	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	99454539	rs36108138	C	A	4377.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:92,205:0.69:297
chr15	99456553	rs951715	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	99460025	rs34129005	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-1.042;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:154,57:0.27:211
chr15	99465285	rs2684806	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	99467934	rs1464430	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	99472734	rs4486868	T	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.319;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:137,43:0.24:180
chr15	99473606	rs33982004	A	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	99477911	rs2715449	T	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	99478493	rs10400894	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	99478505	rs34389972	A	AC	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	99486276	rs35362396	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr15	99492045	rs2684789	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr15	99512574	.	G	T	1263.77	.	AC=1;AF=0.500;AN=2;DP=339;set=Intersection	GT:AD:AF:DP	0/1:238,86:0.27:324
chr15	99512775	rs140607190	C	T	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:415,187:0.31:602
chr15	99514423	.	TGGG	T	390.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.52;ReadPosRankSum=-1.161;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr15	99514440	.	T	A	392.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.74;ReadPosRankSum=-0.582;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr15	99544411	rs74846637	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:35,89:0.72:124
chr15	99544427	rs187365595	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:114,53:0.32:167
chr15	99646107	rs60530833	A	AG	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=33.49;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	99653666	rs2305446	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr15	99653800	rs2305445	T	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:215,87:0.29:302
chr15	99667524	rs260090	G	C	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr15	99670518	rs1670227	T	C	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:93,260:0.74:353
chr15	99670989	rs3743248	T	C	7707.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr15	99671760	rs260087	T	C	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	99672722	rs2292288	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:236,84:0.26:320
chr15	99678257	rs28617660	G	A	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.592;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr15	99679489	rs34077294	GAGAT	G	1863.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr15	99679822	rs8024435	T	A	5423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=-3.243;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:61,149:0.71:210
chr15	99679830	rs260118	A	G	4831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.61;ReadPosRankSum=-2.384;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:56,119:0.68:175
chr15	99701857	rs3803472	A	G	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.693;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:104,44:0.30:148
chr15	99715352	rs2602016	A	G	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	99715370	rs141407504	CAGAA	C	1931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.767;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:126,56:0.31:182
chr15	99799750	rs1976589	T	C	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	99800100	rs55962871	G	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:55,148:0.73:203
chr15	100230908	rs325385	T	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	100243672	rs3730281	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr15	100246942	rs325407	G	A	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,108:0.72:150
chr15	100252709	rs373652230	CCAG	C	3657.73	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:261,115:0.31:376
chr15	100269309	rs6598263	T	G	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:25,85:0.77:110
chr15	100269613	rs11852387	C	T	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:130,269:0.67:399
chr15	100269796	rs6598264	A	G	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,78:0.75:104
chr15	100331100	rs936037	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.403;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr15	100331253	rs1060457	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.130;QD=3.17;ReadPosRankSum=1.359;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chr15	100331416	rs112013076	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=3.064;QD=1.46;ReadPosRankSum=1.432;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:153,34:0.18:187
chr15	100331819	rs2958994	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:116,39:0.25:155
chr15	100331953	rs60883741	T	C	1495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.503;QD=8.55;ReadPosRankSum=-1.509;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:129,46:0.26:175
chr15	100331961	rs1809156	A	G	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-4.045;QD=8.38;ReadPosRankSum=-1.808;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:133,50:0.27:183
chr15	100332543	rs8038502	C	T	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=2.755;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:194,86:0.31:280
chr15	100332553	rs8039154	A	G	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=2.661;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:206,86:0.29:292
chr15	100332662	rs369943588	C	T	7759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-8.436;QD=20.97;ReadPosRankSum=-0.656;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:164,206:0.56:370
chr15	100332671	rs372057278	T	A	7858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.748;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-9.279;QD=22.45;ReadPosRankSum=-1.517;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:160,190:0.54:350
chr15	100332675	rs376343628	G	A	7457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.965;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-9.382;QD=21.68;ReadPosRankSum=-3.367;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:150,194:0.56:344
chr15	100332743	rs8039516	A	G	8929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=10.259;QD=25.30;ReadPosRankSum=3.819;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:87,266:0.75:353
chr15	100332743	.	ATGCA	GTGCA,GTGCG	1614	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=34;MMLQ=24;MQ=50.49;NF=100,68;NR=105,65;PP=722,1614;QD=3.69156689047;SC=GCGCCGGTAGATGCATAACAG;SbPval=0.34;Source=Platypus;TC=248;TCF=130;TCR=118;TR=205,133;WE=100332755;WS=100332733;set=Platypus	GT:AF:DP	0/1:0.83:248
chr15	100332747	rs59281152	A	G	3084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=53.83;MQRankSum=1.487;QD=8.55;ReadPosRankSum=3.715;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:197,164:0.45:361
chr15	100332799	rs11639102	A	C	3862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.594;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-17.234;QD=8.38;ReadPosRankSum=7.227;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:340,121:0.26:461
chr15	100332807	rs11633999	C	T	3845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-16.680;QD=8.10;ReadPosRankSum=6.083;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:356,119:0.25:475
chr15	100332877	rs6598274	T	C	4346.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:84,201:0.71:285
chr15	100332919	rs2603217	T	C	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr15	100333075	rs11634114	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.42;QD=23.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	100339984	rs202154374	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr15	100340010	.	T	C	849.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr15	100345136	rs202231117	TA	T	1608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-3.392;QD=11.66;ReadPosRankSum=0.436;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:39,99:0.72:138
chr15	100514561	rs2581340	G	C	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	100514614	rs2573652	T	C	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	100516472	rs11634977	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	100533218	rs7175995	C	T	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr15	100537494	rs12900132	C	T	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.496;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:27,87:0.76:114
chr15	100589056	rs8028251	T	C	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:100,35:0.26:135
chr15	100591992	rs4965569	A	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr15	100594271	rs28529328	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:91,42:0.32:133
chr15	100594299	rs28587358	G	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr15	100603776	rs6598297	T	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:116,51:0.31:167
chr15	100636586	rs4965583	G	A	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	100649465	rs142688382	C	CCAGCTCCTCTAAACACGCGGCA	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	100649473	rs75158695	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	100649512	rs35121839	A	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	100672092	rs113935043	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr15	100672237	rs12907333	T	G	8370.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr15	100692845	rs28567966	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:240,103:0.30:343
chr15	100693032	rs10664668	C	CTT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.017;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr15	100739405	rs12148118	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr15	100739498	rs181560877	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:191,65:0.25:256
chr15	100794172	rs7172834	T	A	462.78	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	100794363	rs4369638	C	T	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=2.240;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:46,82:0.64:128
chr15	100801698	rs4965613	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr15	100801965	rs6598316	G	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr15	100802495	rs4965296	G	A	2527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=1.713;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:26,63:0.71:89
chr15	100802499	rs4965297	A	G	2614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=1.141;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:26,67:0.72:93
chr15	100821467	rs7496640	G	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	100821576	rs7496668	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	100821647	rs7497712	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	100871329	rs11639041	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,45:0.30:148
chr15	100881214	rs882607	G	T	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	100881995	rs2585224	G	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	100882122	rs150933882	GC	G	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:118,51:0.30:169
chr15	100882270	rs12148712	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.377;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr15	100889405	rs4965641	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:73,24:0.25:97
chr15	100889442	rs4965642	A	G	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=2.002;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:114,27:0.19:141
chr15	100889452	rs78271524	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=1.038;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:120,28:0.19:148
chr15	100889496	rs2289584	T	G	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	100890190	rs2289585	C	A	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr15	100890368	rs148484174	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr15	100942843	rs1023782	G	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.14;ReadPosRankSum=-1.294;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	100942952	rs115420351	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.811;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr15	100942962	rs2439928	T	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	100996038	rs12595207	C	T	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:96,202:0.68:298
chr15	100996076	rs11323964	AT	A	2572.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:250,107:0.30:357
chr15	101019529	rs2654574	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	101019819	rs2587763	G	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	101041896	rs1354332	T	C	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	101109358	rs28438569	A	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	101109677	rs8451	C	A	5264.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:86,236:0.73:322
chr15	101109794	rs12157	C	G	3626.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:78,170:0.69:248
chr15	101109818	rs12460	G	A	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:68,147:0.68:215
chr15	101109893	rs6598356	C	A	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:29,91:0.76:120
chr15	101110265	rs2411836	T	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr15	101110356	rs2411838	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr15	101110372	rs3084804	AAC	A	479.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	101112191	rs148166631	C	T	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.008;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:258,86:0.25:344
chr15	101112342	rs1493652	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	101113748	rs2062816	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr15	101113862	rs12719734	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	101113950	rs12592868	A	G	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:51,136:0.73:187
chr15	101114418	rs8039437	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr15	101115448	rs4965678	C	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=58.04;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	101120996	rs141782332	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr15	101152745	rs4965683	A	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	101170129	rs73483052	A	G	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:70,207:0.75:277
chr15	101418250	rs201820845	A	AT	1392.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:17,74:0.81:91
chr15	101425581	rs74386167	A	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.400;QD=5.49;ReadPosRankSum=2.254;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr15	101425619	rs4646655	G	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.462;QD=4.91;ReadPosRankSum=0.669;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr15	101425703	rs4646656	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	101427998	rs4646660	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr15	101432681	rs3809521	T	C	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:64,160:0.71:224
chr15	101436333	rs112554445	A	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,8:0.19:43
chr15	101440988	rs4646674	A	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	101441055	rs4646675	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	101445815	rs3803430	A	G	955.41	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:6,44:0.88:50
chr15	101447588	rs4646684	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	101455009	rs4646690	G	C	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:32,79:0.71:111
chr15	101455081	rs77734193	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr15	101464915	rs11630691	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-2.833;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:159,56:0.26:215
chr15	101527052	rs1551467	A	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:215,132:0.38:347
chr15	101527096	rs1551466	G	C	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:91,66:0.42:157
chr15	101527343	rs113434590	G	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.682;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chr15	101527635	rs7176015	G	A	5006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=1.777;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:145,245:0.63:390
chr15	101529118	rs4357923	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	101529413	rs57713827	T	TCTC	375.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.710;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=63.06;MQRankSum=6.021;QD=10.15;ReadPosRankSum=-2.063;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr15	101529414	rs57020487	A	T	384.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=63.26;MQRankSum=6.342;QD=9.38;ReadPosRankSum=-2.076;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr15	101529594	rs2412000	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr15	101550858	rs12595297	G	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	101550861	rs11300776	CT	C	2323.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.68;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	101552312	rs113678526	G	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.203;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:164,77:0.32:241
chr15	101561980	rs146724273	CGTGTGTGTGTGT	C	746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=1.659;QD=16.97;ReadPosRankSum=-0.128;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr15	101562793	rs11247253	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr15	101566118	rs4427776	C	T	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr15	101569366	rs61733311	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:252,91:0.27:343
chr15	101569467	rs11639307	T	C	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:54,114:0.68:168
chr15	101591857	rs10710683	CG	C	2641.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr15	101591917	rs116807808	C	A	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.881;QD=4.39;ReadPosRankSum=1.200;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:266,104:0.28:370
chr15	101593504	rs78975797	G	A	8188.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:151,380:0.72:531
chr15	101597266	rs2924845	A	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:63,105:0.62:168
chr15	101607513	rs2925201	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	101717680	rs8024370	G	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:70,144:0.67:214
chr15	101718097	rs28364839	C	G	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:60,171:0.74:231
chr15	101791262	rs7171436	C	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr15	101791359	rs7176149	C	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:73,172:0.70:245
chr15	101791605	rs7175303	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-1.121;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr15	101817630	rs28368985	G	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr15	101826919	rs28698071	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	101827759	rs35525027	T	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr15	101827855	rs61752834	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:49,89:0.64:138
chr15	101833547	rs74041974	G	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr15	101841009	rs76137657	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr15	101871941	rs34318939	G	GA	2372.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,74:0.69:107
chr15	101872179	rs1058291	G	A	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:55,152:0.73:207
chr15	101872306	rs2073592	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr15	101887794	rs1030	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr15	101905084	rs4965833	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr15	101906205	rs8029952	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=1.068;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	101906263	rs8034182	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr15	101929632	rs141220261	ATT	A	4061.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:8,139:0.95:147
chr15	101929825	rs6598460	G	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	101970308	rs2643354	G	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	101970323	rs3825896	G	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.078;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:88,14:0.14:102
chr15	101970336	rs3825895	T	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr15	101971388	rs2643356	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	101972055	rs12902244	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	101984036	rs11855154	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-1.309;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr15	102003442	rs12907397	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:53,14:0.21:67
chr15	102029519	rs186935141	C	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	102029597	rs1135910	C	G	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.975;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr15	102029685	rs199543153	G	GGC	1146.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=42.47;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	102173789	rs601741	G	C	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.484;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:321,99:0.24:420
chr15	102185368	.	T	TA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.858;QD=1.49;ReadPosRankSum=2.150;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr15	102191869	rs672314	G	A	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	102192034	rs507903	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.106;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:182,68:0.27:250
chr15	102192418	rs3743188	C	T	8759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=-1.004;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:123,399:0.76:522
chr15	102192540	rs675436	T	G	2609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.147;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:539,185:0.26:724
chr15	102192548	rs2939587	A	C	20072.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.07;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,646:1.00:646
chr15	102196186	rs572705	C	T	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.613;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:289,82:0.22:371
chr15	102211654	rs606511	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr15	102211993	rs139057031	C	CT	130.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	102242406	rs116227894	T	C	3205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=2.230;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:72,150:0.68:222
chr15	102248933	rs114481588	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr15	102251993	rs11247320	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr15	102284495	rs71407366	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	102288175	.	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.15;MQRankSum=-2.368;QD=16.23;ReadPosRankSum=-0.211;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:21,65:0.76:86
chr15	102291955	rs397212	G	A	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:109,182:0.63:291
chr15	102312008	rs144286100	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:133,67:0.34:200
chr15	102312207	rs75381810	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.987;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-0.157;QD=2.01;ReadPosRankSum=-2.559;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:115,28:0.20:143
chr15	102312240	rs59860046	GA	G	3730.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.84;QD=34.23;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	102312315	rs57638732	GA	G	5340.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	102312339	.	T	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=14.520;MLEAC=1;MLEAF=0.500;MQ=50.96;MQRankSum=2.008;QD=3.68;ReadPosRankSum=-2.352;SOR=2.023;set=HC	GT:AD:AF:DP	0/1:174,29:0.14:203
chr15	102312343	rs201217906	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=19.664;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=1.386;QD=3.55;ReadPosRankSum=-2.465;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:183,35:0.16:218
chr15	102313716	rs352719	A	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	102313869	rs72761685	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr15	102346657	rs77567328	T	C	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:34,132:0.80:166
chr16	81639	rs118023239	C	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	97354	rs8466	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	97610	rs798675	G	A	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	97707	rs148403942	C	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=1.223;QD=7.13;ReadPosRankSum=0.026;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr16	103423	rs2541593	C	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	103449	rs11376822	C	CG	4219.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	103517	rs183360	A	C	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	105320	rs216596	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	106426	rs60136132	G	T	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:38,93:0.71:131
chr16	106706	rs57112603	C	T	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:62,161:0.72:223
chr16	106777	rs216597	G	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	106952	rs11435836	G	GC	365.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	107162	rs10266	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	107275	rs1045001	T	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	108585	rs216598	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	108796	rs34941405	T	TG	2512.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	109330	rs60491225	A	G	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:73,210:0.74:283
chr16	109671	rs216599	A	G	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	110165	rs216600	T	C	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	112112	rs216601	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	112151	rs216602	A	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	112513	rs216604	T	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	113883	rs10659183	G	GCC	8910.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	113886	rs11285099	GC	G	8782.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	113924	rs216605	A	G	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:162,60:0.27:222
chr16	113970	rs2157115	T	C	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:54,162:0.75:216
chr16	128179	rs2562162	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	129223	rs710079	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	129266	rs2234890	G	GT	2427.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:31,98:0.76:129
chr16	129277	rs710080	A	G	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	129654	rs710081	C	T	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	136888	rs743725	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr16	138772	rs57321480	A	AG	9386.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.25;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	139784	rs74712570	G	C	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:48,111:0.70:159
chr16	142770	rs142977443	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr16	142825	rs2541618	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	148351	.	CGGGT	C	1841.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=4.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.75;ReadPosRankSum=-1.185;SOR=1.875;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr16	148356	.	ATGCACCAGGTCCTGCACCAGGTATGCACCG	A	1836.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=4.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.66;ReadPosRankSum=-0.870;SOR=1.875;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr16	148386	.	G	A	2136	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=2;NR=19;PP=2136;QD=103.37005774;SC=GGTATGCACCGGGTATGCACC;SbPval=0.96;Source=Platypus;TC=70;TCF=16;TCR=54;TR=21;WE=148394;WS=148335;set=Platypus	GT:AD:AF:DP	1/0:49,21:0.30:70
chr16	160668	rs808892	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	167165	rs216096	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	175144	rs2562166	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:80,40:0.33:120
chr16	175186	rs2562165	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr16	203016	rs2685128	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-5.512;QD=1.26;ReadPosRankSum=-0.504;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr16	203118	.	G	GACAGTGGGGAGGGGACAGTGGGGAGAGGACAGTGAGGAGGGGACCATGGGGAGGAC	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.378;QD=23.79;ReadPosRankSum=0.043;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr16	203132	rs2541598	C	G	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.708;QD=20.76;ReadPosRankSum=1.115;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	203135	rs2858919	T	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=23.55;ReadPosRankSum=0.601;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	203144	rs2947790	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.950;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr16	204410	rs111716204	C	G	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=1.823;QD=1.51;ReadPosRankSum=0.844;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:698,157:0.18:855
chr16	214689	.	C	CGCGGGGCGCGGTGCGGGCGGG	370.74	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.84;QD=46.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	214730	.	C	CG	299.75	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=37.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	214739	.	C	T	275.80	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.69;QD=45.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	216190	rs11431675	C	CG	3860.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	216351	rs115665345	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:121,49:0.29:170
chr16	223706	rs2541640	A	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	223735	rs2685121	A	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	230481	rs1005364	C	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	230578	rs11863726	A	G	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.612;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:157,44:0.22:201
chr16	240280	rs1211375	A	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	277458	rs1203974	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	284556	rs7191945	G	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.28;ReadPosRankSum=-1.680;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr16	284833	rs7202423	T	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	287382	rs73484307	G	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr16	309445	rs146746669	TG	T	702.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:103,25:0.20:128
chr16	309447	rs201639174	G	C	711.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-1.305;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:103,25:0.20:128
chr16	319219	rs116377490	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr16	319511	rs739999	A	G	7870.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr16	319725	rs740000	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	320865	rs28489087	G	A	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr16	321061	rs73486213	C	G	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:34,155:0.82:189
chr16	321179	rs141906694	C	T	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:36,153:0.81:189
chr16	324030	rs112344350	T	TG	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.038;SOR=2.058;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr16	324052	rs2685126	A	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	325683	rs200964940	C	CG	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	325695	rs201791993	A	AG	222.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	325732	rs202190256	A	AG	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	325771	rs111978133	GT	G	880.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.70;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	330925	rs369440	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	332558	rs61572786	CG	C	3158.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:38,128:0.77:166
chr16	334464	rs115506610	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.479;QD=2.20;ReadPosRankSum=-0.789;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:135,33:0.20:168
chr16	334612	rs34092632	AT	A	7884.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:68,245:0.78:313
chr16	334665	rs11863142	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:47,144:0.75:191
chr16	335619	rs45612235	G	A	13267.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr16	336377	rs45529833	C	G	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,91:0.77:118
chr16	336526	rs45468997	T	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.034;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:183,48:0.21:231
chr16	337122	rs45504596	G	A	11429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=-1.774;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:165,527:0.76:692
chr16	338332	rs11374767	A	AC	2794.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	339385	rs17135988	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:4,55:0.93:59
chr16	339415	rs387467	G	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:13,78:0.86:91
chr16	341385	rs9935878	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr16	343691	rs79781539	G	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.848;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:125,35:0.22:160
chr16	348042	rs1805103	C	A	4941.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:50,219:0.81:269
chr16	348233	rs116350678	C	T	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.794;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:206,72:0.26:278
chr16	359953	rs2301522	A	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.79;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	359953	.	ACC	GCC,GCT	510	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=31,7;NR=15,4;PP=510,24;QD=11.8428524467;SC=TGGGCTGAGGACCGCAAAGCC;SbPval=0.52;Source=Platypus;TC=47;TCF=32;TCR=15;TR=46,11;WE=359963;WS=359943;set=Platypus	GT:AF:DP	0/1:0.98:47
chr16	359955	rs116234849	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.169;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr16	360148	rs55931984	C	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	396264	rs1805105	A	G	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr16	417629	rs116146323	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.509;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr16	418462	rs11640313	C	G	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.242;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:217,52:0.19:269
chr16	419092	rs3830160	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	419283	rs11434190	A	AG	2076.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	419614	.	C	CCCGACCTGCTCTGCTCGCCTCCCCGACCTGCTCTGCTCGCCTCT	3657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.080;ClippingRankSum=0.000;DP=829;ExcessHet=3.0103;FS=8.044;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=19.838;QD=4.49;ReadPosRankSum=-4.207;SOR=1.562;set=HC	GT:AD:AF:DP	0/1:735,79:0.10:814
chr16	419733	rs114829852	A	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.041;QD=2.02;ReadPosRankSum=-0.415;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:248,60:0.19:308
chr16	419923	rs73492331	G	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.459;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:202,53:0.21:255
chr16	421912	rs17136392	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-1.984;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr16	422412	rs7184133	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr16	425298	rs11648905	G	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:42,94:0.69:136
chr16	426432	rs2071915	T	C	3486.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:32,155:0.83:187
chr16	426476	rs2071916	T	C	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:41,130:0.76:171
chr16	427013	rs763140	G	C	2518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=0.628;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:35,109:0.76:144
chr16	427349	rs763142	C	A	318.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr16	427435	rs79494779	G	A	1159.31	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:7,53:0.88:60
chr16	427479	rs11248931	T	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:14,88:0.86:102
chr16	427516	rs11649031	T	C	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:25,100:0.80:125
chr16	427622	rs371533664	G	A	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:34,120:0.78:154
chr16	427657	rs11641693	G	A	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:30,100:0.77:130
chr16	427784	rs11641742	G	A	3394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.332;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:59,156:0.73:215
chr16	427866	rs12933709	T	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=-0.668;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:14,65:0.82:79
chr16	431702	.	G	A	826.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr16	447100	.	GTCCGGGGCGGCGGGGGGC	G	168.87	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	447821	rs372308687	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:23,91:0.80:114
chr16	447948	rs111466606	A	G	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.773;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:216,76:0.26:292
chr16	448172	rs431324	A	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr16	448931	rs80189974	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr16	449162	rs7185254	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr16	449178	rs2363759	T	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr16	449345	rs763151	G	C	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr16	449659	rs14293	G	A	5642.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:58,269:0.82:327
chr16	449980	rs28394836	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr16	450140	rs35963490	C	CAG	11851.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:75,290:0.79:365
chr16	450165	rs448063	T	C	5690.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:76,260:0.77:336
chr16	450309	rs5841	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr16	450362	rs113276552	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr16	452159	rs112988705	CCTTT	C	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	456239	rs11391097	G	GC	4165.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	456291	rs11391098	G	GC	4077.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:78,146:0.65:224
chr16	456295	.	C	CCT	2330.73	.	AC=1;AF=0.500;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	0/1:157,77:0.33:234
chr16	456439	rs139257963	G	C	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:44,192:0.81:236
chr16	456483	rs3785290	T	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:25,93:0.79:118
chr16	460123	rs140298403	C	A	1264.96	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:5,53:0.91:58
chr16	476096	rs1883371	A	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	476430	rs181591879	C	G	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.342;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:225,77:0.25:302
chr16	532248	rs9935319	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	538720	rs11371105	T	TC	916.14	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:4,29:0.88:33
chr16	539088	rs3830847	T	TAA	2695.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr16	541091	rs76013650	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:23,77:0.77:100
chr16	547209	.	G	T	344.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:69,24:0.26:93
chr16	570454	rs11863276	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	570557	rs11537754	T	C	9076.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	570623	rs2071978	G	A	9925.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	593277	rs8054514	T	G	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	599893	rs8061159	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr16	601219	.	GTCCCGGTCAGTGAGGGT	G	2615	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=3;MGOF=54;MMLQ=24;MQ=60.3;NF=9;NR=8;PP=2615;QD=20;SC=GTCGGTGAGGGTCCCGGTCAG;SbPval=0.42;Source=Platypus;TC=24;TCF=14;TCR=10;TR=17;WE=601243;WS=601194;set=Platypus	GT:AD:AF:DP	1/0:7,17:0.71:24
chr16	601254	.	C	G	568	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=2;MGOF=72;MMLQ=24;MQ=60.24;NF=27;NR=10;PP=568;QD=16.2911138526;SC=CGGTGAGGGTCCCCTGTCGGT;SbPval=0.66;Source=Platypus;TC=54;TCF=38;TCR=16;TR=37;WE=601262;WS=601244;set=Platypus	GT:AD:AF:DP	0/1:17,37:0.69:54
chr16	601632	rs3213574	T	C	5559.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=-1.103;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,223:0.99:225
chr16	601914	rs12449064	G	A	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	601938	rs116203683	T	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:19,71:0.79:90
chr16	602046	rs7196821	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	602313	rs9930550	C	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.738;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:296,70:0.19:366
chr16	602801	.	T	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=47.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.238;SOR=4.971;set=HC	GT:AD:AF:DP	0/1:69,11:0.14:80
chr16	602805	.	GCA	G	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=37.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.638;SOR=4.608;set=HC	GT:AD:AF:DP	0/1:83,9:0.10:92
chr16	602807	.	A	AGGGGGGGGGGGGGGGG	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=35.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.934;SOR=4.608;set=HC	GT:AD:AF:DP	0/1:80,9:0.10:89
chr16	603471	rs11248937	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.253;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:236,49:0.17:285
chr16	604554	rs7763	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.180;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr16	628545	.	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.969;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:185,28:0.13:213
chr16	631235	.	G	A	2112.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:43,136:0.76:179
chr16	679412	rs9929621	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.770;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr16	679814	rs12447874	T	C	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	699456	rs12934086	A	G	442.94	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr16	699667	rs116801785	C	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr16	700644	rs13337278	G	C	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	701578	rs35244470	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	703721	rs9936879	A	C	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	705360	rs3803697	T	C	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	705795	rs12599798	C	T	9541.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:118,417:0.78:535
chr16	705844	rs8051645	T	C	11160.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr16	705920	rs9930754	G	C	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.863;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:125,47:0.27:172
chr16	706010	rs35582942	C	CA	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	706067	rs9932866	G	A	140.89	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	706534	rs28485323	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.222;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr16	707034	rs6600228	A	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	707295	rs6600229	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	707748	rs36022186	C	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.932;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:145,34:0.19:179
chr16	708071	rs2071831	G	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-1.601;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr16	708275	rs45613635	C	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.716;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:273,57:0.17:330
chr16	708419	rs7188691	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	709001	rs4984906	C	A	11579.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr16	709152	rs7184667	G	A	10740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=1.376;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:134,489:0.78:623
chr16	709157	rs7194532	T	C	25087.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.60;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,618:1.00:618
chr16	710255	rs3752496	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:19,72:0.79:91
chr16	710808	rs73487454	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr16	711016	rs76032962	G	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	711326	rs9932282	G	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	711545	rs11284424	CG	C	8920.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:3,304:0.99:307
chr16	711572	rs8062682	C	T	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.819;QD=2.88;ReadPosRankSum=2.796;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:284,82:0.22:366
chr16	711582	rs8062685	C	G	11299.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr16	711712	rs3177415	C	T	12724.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr16	711905	rs2301426	A	G	12728.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr16	712085	rs116025477	G	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr16	712127	rs10903018	A	G	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	712154	rs11248943	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:105,35:0.25:140
chr16	712867	rs1057835	A	G	8788.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	715847	rs3752494	A	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	715990	rs7190775	G	A	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr16	716273	rs11866949	T	C	7453.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:103,341:0.77:444
chr16	716428	rs3743909	G	A	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	717057	rs7189028	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	717085	rs7197072	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr16	717523	rs3752493	G	T	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr16	717544	rs3752492	G	C	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:50,194:0.80:244
chr16	717828	rs3752490	G	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	719592	rs11557858	G	A	5070.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:61,232:0.79:293
chr16	721798	rs146789763	T	TCCCCTG	16818.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.438;QD=33.57;ReadPosRankSum=0.316;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,499:1.00:501
chr16	722331	rs3177338	C	T	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	722548	rs1128550	A	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	723647	rs1045716	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	732287	rs3216838	GC	G	1771.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.711;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:352,82:0.19:434
chr16	735195	rs9930020	G	A	6251.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:68,271:0.80:339
chr16	735794	rs11640115	A	G	2875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=1264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.138;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:991,252:0.20:1243
chr16	735921	rs763053	T	C	21075.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:0,819:1.00:819
chr16	736777	rs77763943	G	A	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:76,184:0.71:260
chr16	737793	rs1018804	G	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.038;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:218,65:0.23:283
chr16	740404	rs4984682	C	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.621;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:287,81:0.22:368
chr16	740466	rs4984913	A	G	11192.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:1,433:1.00:434
chr16	746011	rs112597043	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr16	746884	rs4984683	A	C	1903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.251;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:412,138:0.25:550
chr16	746914	rs4984915	G	A	1976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.654;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:490,152:0.24:642
chr16	747454	rs12922098	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.716;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr16	765267	rs188927605	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	766001	rs1076939	T	G	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:52,182:0.78:234
chr16	766078	rs66649828	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr16	766485	rs6600231	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:32,100:0.76:132
chr16	766690	rs7197682	C	T	4879.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:77,222:0.74:299
chr16	767425	.	GT	TG	2231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=7.368;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.25;ReadPosRankSum=-1.113;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:22,57:0.72:79
chr16	767430	rs10682	C	G	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.21;ReadPosRankSum=-0.776;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:19,51:0.73:70
chr16	771181	rs56225914	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=1.006;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	771234	rs55708282	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	771286	rs11540049	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr16	771750	rs3752555	T	C	4466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-1.537;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:80,212:0.73:292
chr16	772061	rs55956436	C	T	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:29,133:0.82:162
chr16	772141	rs11867009	G	C	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:44,171:0.80:215
chr16	772842	rs12599130	T	C	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:61,212:0.78:273
chr16	772978	rs146067716	C	T	7235.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:77,325:0.81:402
chr16	773291	rs35843452	GC	G	3029.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:29,116:0.80:145
chr16	773558	rs11860108	G	A	5323.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:71,240:0.77:311
chr16	773998	rs73489336	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:84,25:0.23:109
chr16	774692	rs2071950	A	G	4928.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:83,229:0.73:312
chr16	775089	rs8055909	C	T	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:104,306:0.75:410
chr16	775605	rs61750931	G	A	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:54,144:0.73:198
chr16	776399	rs61910708	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:9,59:0.87:68
chr16	776614	rs79067232	C	A	610.53	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr16	777912	rs57108172	AG	A	3573.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:29,114:0.80:143
chr16	778024	rs1406814	T	C	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:55,124:0.69:179
chr16	778295	rs115650893	C	A	4171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=18.71;ReadPosRankSum=-1.047;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:36,187:0.84:223
chr16	778773	rs60982207	C	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:62,163:0.72:225
chr16	779435	rs61746467	G	C	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:24,123:0.84:147
chr16	779689	rs1054788	G	C	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-1.717;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:17,61:0.78:78
chr16	780339	rs7205337	A	G	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:49,138:0.74:187
chr16	784920	rs9932304	A	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-1.659;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	787827	rs12449156	A	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr16	789761	rs3752556	A	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr16	790078	rs112836927	C	G	10972.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:211,514:0.71:725
chr16	813120	rs144629364	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr16	813775	rs9929183	A	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.58;ReadPosRankSum=1.221;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr16	814307	rs4438308	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	814524	rs74001003	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:54,13:0.19:67
chr16	814749	rs150637121	AC	A	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.388;QD=2.30;ReadPosRankSum=-0.224;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:122,34:0.22:156
chr16	815370	rs7197395	T	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.79;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	815379	rs7197402	T	C	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	815413	rs7205754	C	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	815628	rs1737340	A	G	13976.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr16	816294	rs3765322	T	G	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	817016	rs72440262	AGCCAGGGAGTCCCTG	A	4962.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	817339	rs3765325	G	T	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=0.824;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:23,63:0.73:86
chr16	817407	rs72773454	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.527;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:157,48:0.23:205
chr16	818559	rs1135210	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:70,17:0.20:87
chr16	818643	rs58800379	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:216,55:0.20:271
chr16	818807	rs57272256	C	T	3195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=1114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-2.378;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:844,252:0.23:1096
chr16	818887	.	C	G	13748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=1.482;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:194,618:0.76:812
chr16	819008	rs58596209	T	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-1.221;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr16	820109	rs7185231	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:73,22:0.23:95
chr16	820143	rs9746539	TG	CA	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.977;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-1.198;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr16	820215	rs74656628	T	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:40,94:0.70:134
chr16	820249	rs9745376	G	A	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	820302	rs114829374	G	T	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:45,113:0.72:158
chr16	820328	rs3765328	A	C	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	820353	rs9746336	A	C	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	820379	rs55668207	C	T	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	820382	rs11384995	A	AT	2519.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	820636	.	CGGGTGAGGGGGGCTGGGCTCCACCAGGGGAGCCGCCTGGGGGGACG	C	5712.73	.	AC=2;AF=1.00;AN=2;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=38.34;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	820662	.	G	T	1276	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=3;MGOF=17;MMLQ=22;MQ=59.44;NF=39;NR=45;PP=1276;QD=15.604419197;SC=GGCTCCACCAGGGGAGCCGCC;SbPval=0.39;Source=Platypus;TC=96;TCF=41;TCR=55;TR=84;WE=820689;WS=820625;set=Platypus	GT:AD:AF:DP	1/1:12,84:0.88:96
chr16	820681	.	C	T	1019	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=4;HapScore=3;MGOF=12;MMLQ=19;MQ=59.08;NF=23;NR=27;PP=1019;QD=21.0754242509;SC=CCTGGGGGGACGGGGTGAGGG;SbPval=0.36;Source=Platypus;TC=66;TCF=27;TCR=39;TR=50;WE=820689;WS=820625;set=Platypus	GT:AD:AF:DP	1/1:16,50:0.76:66
chr16	820888	rs12599339	T	C	2968.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.895;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.117;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.82;ReadPosRankSum=-0.117;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:5,110:0.96:115
chr16	820888	.	TCTCATGGGCCTTGGT	CCTCACGGGCCTTGGC,CCTCATGGGCCTTGGT	1410	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=24;MQ=59.76;NF=6,17;NR=3,26;PP=231,1410;QD=32.7186527625;SC=CTGCCGAAGGTCTCATGGGCC;SbPval=0.28;Source=Platypus;TC=51;TCF=25;TCR=26;TR=9,43;WE=820911;WS=820878;set=Platypus	GT:AF:DP	0/1:0.18:51
chr16	820893	rs116597278	T	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-2.231;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:100,34:0.25:134
chr16	820903	rs114200955	T	C	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-1.184;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:94,35:0.27:129
chr16	821057	rs74001008	A	G	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	823094	rs7185842	A	G	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr16	823153	rs74001009	A	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.955;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:315,102:0.24:417
chr16	823386	.	CTTTT	C	491.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=9.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.94;ReadPosRankSum=1.945;SOR=5.549;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr16	824098	rs9927150	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	824141	rs72759403	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	824378	rs151219564	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:28,93:0.77:121
chr16	824390	rs140359955	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.936;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr16	824426	rs61734004	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.001;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr16	824473	rs61734013	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.065;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr16	824940	rs138626915	G	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr16	825255	rs73491269	G	A	5969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=3.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=3.689;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:70,268:0.79:338
chr16	825654	rs59872948	T	C	3722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=1210;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.562;QD=3.12;ReadPosRankSum=0.166;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:907,288:0.24:1195
chr16	828844	rs1737342	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	829955	rs3765329	G	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	830747	.	TGTGTGCACGGGTAGGTGACG	T	6276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=3.910;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.109;QD=21.79;ReadPosRankSum=8.213;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:127,161:0.56:288
chr16	830785	.	A	ACAG	2935	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=23;MMLQ=25;MQ=57.07;NF=6;NR=47;PP=2935;QD=20;SC=CGGGTAGGTGACGGTGTGCAC;SbPval=0.93;Source=Platypus;TC=127;TCF=25;TCR=102;TR=53;WE=830795;WS=830775;set=Platypus	GT:AD:AF:DP	1/0:74,53:0.42:127
chr16	833185	rs74001024	C	G	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr16	833223	rs145604781	G	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.347;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.523;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr16	833291	rs35339491	C	G	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	835776	.	C	T	776.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr16	835809	.	G	A	1866.77	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:30,79:0.72:109
chr16	836199	rs55658005	G	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.405;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:204,58:0.22:262
chr16	836342	rs57753356	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.831;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr16	836421	rs74001027	G	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	836992	rs2272896	G	C	12115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-2.796;QD=17.36;ReadPosRankSum=0.883;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:157,541:0.78:698
chr16	837310	rs531278	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	838044	rs8056717	G	C	124.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.60;ReadPosRankSum=-1.242;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr16	838148	rs8052561	C	T	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-2.047;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,46:0.81:57
chr16	838394	.	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=9.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=3.096;SOR=1.456;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr16	838407	rs10542661	GCC	G	174.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=1.739;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr16	839262	rs569951	A	G	8382.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.81;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	839262	.	ATCGGAGG	GTCGGAGA,GTCGGAGG	1364	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=60.0;NF=43,64;NR=51,72;PP=1364,381;QD=15.0794454773;SC=TGAACTTCAGATCGGAGGAGA;SbPval=0.6;Source=Platypus;TC=136;TCF=64;TCR=72;TR=94,136;WE=839277;WS=839252;set=Platypus	GT:AF:DP	0/1:0.69:136
chr16	839269	rs77682584	G	A	3253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-2.292;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:54,153:0.74:207
chr16	839434	.	G	C	3642.77	.	AC=1;AF=0.500;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:67,162:0.71:229
chr16	839949	rs11425062	C	CT	17750.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.146;QD=36.75;ReadPosRankSum=1.671;SOR=0.345;set=HC	GT:AD:AF:DP	1/1:1,482:1.00:483
chr16	839996	rs4984925	T	C	22345.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.203;QD=25.89;ReadPosRankSum=-0.755;SOR=0.462;set=HC	GT:AD:AF:DP	1/1:3,860:1.00:863
chr16	840014	rs4984926	A	C	3412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-2.012;QD=3.78;ReadPosRankSum=0.031;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:662,241:0.27:903
chr16	840190	rs147014783	A	C	6318.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:87,283:0.76:370
chr16	840378	rs3765263	A	G	9367.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr16	840409	rs3765264	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.410;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:320,74:0.19:394
chr16	840517	rs199586363	C	T	4862.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:52,208:0.80:260
chr16	841175	rs2063911	C	T	8883.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:123,413:0.77:536
chr16	841966	rs742319	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:270,96:0.26:366
chr16	842450	rs2277897	C	T	2020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.820;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:481,156:0.24:637
chr16	842686	rs4984929	C	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.005;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:245,67:0.21:312
chr16	842706	rs742320	G	A	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	842826	rs74908091	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=2.426;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:125,28:0.18:153
chr16	843084	rs3833825	C	CGGGTG	1036.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr16	845819	rs2294446	A	G	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	845901	rs2982244	T	C	18356.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr16	846031	rs35316821	C	T	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.878;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:291,73:0.20:364
chr16	846934	rs60372043	A	C	7819.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:114,362:0.76:476
chr16	847597	rs2294450	T	C	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	847835	rs74001030	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.707;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr16	848013	rs28396288	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,48:0.79:61
chr16	848697	rs146451993	TGA	T	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.087;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:95,25:0.21:120
chr16	848755	rs36073541	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.305;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:156,37:0.19:193
chr16	849166	rs2272900	C	A	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:15,68:0.82:83
chr16	855342	rs614048	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	855717	rs1005190	C	G	15361.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr16	855732	rs115484509	C	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.450;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:380,99:0.21:479
chr16	863192	rs13331006	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.056;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr16	863201	rs13337795	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.204;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:46,22:0.32:68
chr16	863336	rs11860086	T	C	12314.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	863355	rs138733834	AGGACGCCGGACCGACAC	A	17191.73	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr16	863498	rs13333991	G	C	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=-1.606;QD=3.53;ReadPosRankSum=0.827;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:308,104:0.25:412
chr16	905559	rs4984949	A	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	919403	.	T	C	3996.77	.	AC=1;AF=0.500;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	0/1:35,180:0.84:215
chr16	929711	rs2076425	C	T	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	942989	rs11864203	G	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	943107	rs4984705	A	G	12773.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr16	943130	rs4984706	C	G	11615.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr16	943317	rs11404654	C	CT	4464.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	943361	rs4984707	T	C	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	943534	rs4984708	C	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	984113	rs11248955	C	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	997352	rs12446579	A	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.848;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr16	997362	rs112267248	T	C	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.533;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:102,27:0.21:129
chr16	997473	rs12447306	T	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.044;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:230,61:0.21:291
chr16	997496	rs12445470	C	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.038;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:226,60:0.21:286
chr16	997520	rs12447329	T	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.731;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:205,52:0.20:257
chr16	997534	rs12933840	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=4.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.321;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:178,49:0.22:227
chr16	1004694	rs3751666	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chr16	1004743	rs3751665	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr16	1014119	rs11862542	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	1021000	.	CCGGAGGCCCCGCCCATTCT	CAGGCCCCGCCCATTCT,C	248.75	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=9;set=Intersection	GT:AF:DP	1/1:1.00:8
chr16	1021001	.	C	A	249	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=45;MMLQ=26;MQ=60.0;NF=1;NR=9;PP=249;QD=28.3771212547;SC=GGCGCACTCCCGGAGGCCCCG;SbPval=0.8;Source=Platypus;TC=13;TCF=2;TCR=11;TR=10;WE=1021026;WS=1020990;set=Platypus	GT:AD:AF:DP	1/1:3,10:0.77:13
chr16	1021004	.	AGGCCCCGCCCATTCTC	A	247.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1032353	rs201672745	C	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr16	1034834	rs237674	T	C	12070.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr16	1034954	rs11542178	T	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	1035456	rs11866418	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	1115495	rs213659	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.543;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr16	1116169	rs7189857	A	G	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.028;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:132,38:0.22:170
chr16	1116220	rs34024516	T	TG	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.448;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr16	1116445	rs530518	A	G	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr16	1116567	rs598257	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr16	1129525	rs4988488	G	A	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.510;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:272,74:0.21:346
chr16	1129872	rs169068	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-1.781;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:248,78:0.24:326
chr16	1129912	rs642249	A	G	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	1131207	rs73494036	G	A	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.600;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:252,77:0.23:329
chr16	1143422	.	A	ACC	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-0.000;QD=6.41;ReadPosRankSum=-0.967;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr16	1143443	.	GAC	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-0.000;QD=13.25;ReadPosRankSum=-0.547;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr16	1143547	rs73494080	T	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=1.092;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr16	1143978	rs142667444	G	GC	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.767;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:102,34:0.25:136
chr16	1204051	rs147910127	CGGCGGGGGGCGGGGGGCGGGG	C	2822.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:20,72:0.78:92
chr16	1244877	rs9936834	G	A	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-1.382;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:25,65:0.72:90
chr16	1244887	rs3751661	T	A	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.69;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	1245062	rs59794024	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.704;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:183,60:0.25:243
chr16	1245207	.	A	ATCAGGGCGAGGT	775.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr16	1245361	rs59721152	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.492;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr16	1246067	rs35907691	G	A	4443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=7.325;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.919;QD=16.58;ReadPosRankSum=-0.361;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:58,210:0.78:268
chr16	1250096	rs114319122	C	G	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:41,199:0.83:240
chr16	1250147	rs141166913	CTGATCACGTCCCTGACCT	C	15237.73	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:121,398:0.77:519
chr16	1250559	rs8044363	T	C	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:73,312:0.81:385
chr16	1251963	rs60414549	C	T	9283.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:99,416:0.81:515
chr16	1252259	rs9934839	A	G	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	1252473	rs150356401	C	G	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.351;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:130,47:0.27:177
chr16	1254563	rs116880320	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr16	1254577	rs11640345	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	1255030	.	A	G	330	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=2;MGOF=71;MMLQ=21;MQ=52.55;NF=17;NR=6;PP=330;QD=15.8596179368;SC=GGTGGGAGCCACGGGTGGGGG;SbPval=0.46;Source=Platypus;TC=30;TCF=23;TCR=7;TR=23;WE=1255038;WS=1255022;set=Platypus	GT:AD:AF:DP	0/1:7,23:0.77:30
chr16	1255030	.	A	ACGGGTGGGGGCCCCAGATCAGTGCCGGGGAGGGGTGGGAGCCG	499.73	.	AC=1;AF=0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;QD=55.53;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,0:0:9
chr16	1257731	rs12930875	G	A	13950.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr16	1257940	rs2738896	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-2.312;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr16	1260021	rs8056494	G	T	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	1260481	rs8063574	T	C	20088.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,780:1.00:780
chr16	1260767	rs2738897	G	A	7990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-2.116;QD=17.72;ReadPosRankSum=2.311;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:82,369:0.82:451
chr16	1260969	rs61910714	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr16	1261024	rs2738898	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1261119	rs2738899	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	1261219	rs2753326	A	G	18888.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr16	1261222	rs2753325	A	G	19069.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr16	1261282	rs4984637	T	C	14069.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:1,532:1.00:533
chr16	1261377	rs2738900	G	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	1264033	rs376817082	C	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr16	1265720	rs3897150	C	T	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	1266803	rs11395347	C	CT	1654.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	1268494	rs2745136	C	T	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	1269029	rs2738893	T	C	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	1270162	rs1054645	G	A	9658.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=9.930;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=1.288;SOR=0.333;set=HC	GT:AD:AF:DP	1/1:3,388:0.99:391
chr16	1270349	rs4247094	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	1271890	rs1004041	G	T	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:55,174:0.76:229
chr16	1272038	rs11248860	G	A	8881.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr16	1272865	rs4984639	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	1273638	rs909920	A	G	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr16	1275135	rs9938123	T	C	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr16	1278599	rs4360940	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.23;QD=43.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	1278609	rs77309587	G	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=41.20;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	1279545	rs1800990	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.42;QD=22.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	1279817	rs200692215	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.27;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	1291075	rs71380253	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.82;MQRankSum=-0.524;QD=14.96;ReadPosRankSum=0.524;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	1291188	rs17434400	C	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr16	1291510	rs375711119	G	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.42;MQRankSum=-0.953;QD=9.33;ReadPosRankSum=-0.966;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr16	1291597	rs144979264	C	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,73:0.34:216
chr16	1292003	rs199639987	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.41;MQRankSum=0.210;QD=24.46;ReadPosRankSum=-0.431;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr16	1292021	rs200521594	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.79;MQRankSum=-0.566;QD=16.97;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr16	1292425	rs67723611	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	1306268	rs1969652	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-4.320;QD=3.16;ReadPosRankSum=0.286;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:77,25:0.25:102
chr16	1306346	rs3865205	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.744;QD=9.28;ReadPosRankSum=0.520;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr16	1306355	rs1800984	T	C	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-5.317;QD=9.97;ReadPosRankSum=-0.111;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:80,34:0.30:114
chr16	1306377	rs3927397	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr16	1306484	rs2401939	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=-1.532;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr16	1306559	rs3830782	AG	A	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:64,22:0.26:86
chr16	1306607	rs113256300	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:33,95:0.74:128
chr16	1306665	rs3993988	A	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-5.742;QD=8.41;ReadPosRankSum=0.665;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr16	1306671	rs1141966	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-6.229;QD=8.42;ReadPosRankSum=1.100;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:94,33:0.26:127
chr16	1306954	rs61729110	C	G	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=2.103;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:23,90:0.80:113
chr16	1306981	rs2272971	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.919;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:98,27:0.22:125
chr16	1307209	rs114385573	G	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr16	1311143	rs116631860	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr16	1311361	rs57416515	C	T	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.746;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:472,139:0.23:611
chr16	1311697	rs7199412	C	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:40,130:0.76:170
chr16	1312621	rs75743580	G	A	7931.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:100,356:0.78:456
chr16	1312955	rs7184355	A	G	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:78,244:0.76:322
chr16	1323781	rs1610294	T	C	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:31,162:0.84:193
chr16	1358608	rs148430996	ATGAGGGAGGGAGGGAATTAG	A	919.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.64;QD=38.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	1358874	rs189481636	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	1358917	rs11644706	A	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr16	1358976	rs11645809	T	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	1364140	rs9941160	T	C	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr16	1364243	rs73502126	C	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,100:0.75:133
chr16	1364281	rs4984806	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	1370303	rs909916	T	C	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	1370309	rs909917	C	G	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	1370597	rs4017786	G	C	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	1370614	rs8063770	C	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1370630	rs8043720	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	1374656	rs761060	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.162;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr16	1374818	rs8063	A	G	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.138;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:282,97:0.26:379
chr16	1384552	rs142934795	GC	G	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.53;ReadPosRankSum=-1.068;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	1388416	rs13338616	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	1388888	rs7197416	C	T	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	1389153	rs7202563	C	A	11504.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr16	1389629	rs78268478	A	G	16719.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr16	1391132	rs11866635	C	T	15373.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.029;QD=25.24;ReadPosRankSum=0.871;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:2,607:1.00:609
chr16	1391871	rs2369699	C	G	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	1394507	rs1132356	A	C	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	1394551	rs11248872	A	G	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr16	1395614	rs183037640	A	C	512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=0.384;QD=14.24;ReadPosRankSum=5.117;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr16	1395615	rs187653083	A	T	469.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=0.384;QD=13.05;ReadPosRankSum=4.742;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr16	1395630	rs55683704	A	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=0.477;QD=14.85;ReadPosRankSum=4.296;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	1395638	.	AGCCTCCCCG	A	2971	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=4;HapScore=1;MGOF=67;MMLQ=24;MQ=63.03;NF=29;NR=36;PP=2971;QD=20;SC=CCACAACCCCAGCCTCCCCGG;SbPval=0.52;Source=Platypus;TC=68;TCF=30;TCR=38;TR=65;WE=1395654;WS=1395619;set=Platypus	GT:AD:AF:DP	1/0:3,65:0.96:68
chr16	1396788	rs3215518	TGCAGGTGGGGCCAGCGGG	T	2590.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	1397698	rs8055112	G	A	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	1398077	rs34766513	C	CCT	29197.73	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr16	1400693	rs2294605	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	1401845	rs28541713	C	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	1401895	rs28654239	G	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	1407792	rs4984644	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	1407809	rs4984820	T	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1417375	rs79959864	A	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	1417408	rs4984823	T	C	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	1417579	.	A	G	323	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=3;HapScore=3;MGOF=77;MMLQ=24;MQ=59.03;NF=10;NR=7;PP=323;QD=21.045365444;SC=CTCCCCTCCCATCTCACCCCC;SbPval=0.72;Source=Platypus;TC=22;TCF=12;TCR=10;TR=17;WE=1417592;WS=1417560;set=Platypus	GT:AD:AF:DP	1/1:5,17:0.77:22
chr16	1417584	.	A	AC	894	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=6;HapScore=3;MGOF=77;MMLQ=24;MQ=59.52;NF=10;NR=9;PP=894;QD=48.6842105263;SC=CTCCCATCTCACCCCCACACG;SbPval=0.4;Source=Platypus;TC=24;TCF=14;TCR=10;TR=19;WE=1417592;WS=1417560;set=Platypus	GT:AD:AF:DP	1/1:5,19:0.79:24
chr16	1419947	rs11248874	A	G	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	1433766	rs12918814	T	C	10349.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	1440802	.	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,44:0.83:53
chr16	1447278	rs61738727	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	1453264	rs151239528	G	A	4815.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:57,221:0.79:278
chr16	1455900	rs8044833	C	T	13582.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr16	1458381	rs1609562	G	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	1458561	rs2179534	T	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	1464636	rs111437424	A	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1476465	rs4984834	A	G	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	1478319	rs113339946	C	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	1484338	rs7192100	A	G	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=0.820;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:15,71:0.83:86
chr16	1484348	rs7196951	T	G	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.27;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	1484385	rs78398531	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.246;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:145,27:0.16:172
chr16	1484473	rs7192331	A	G	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	1484528	rs61744665	G	A	7150.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr16	1484613	rs7190606	G	A	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	1484791	rs7192233	C	T	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	1485243	rs9927318	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	1485255	rs9927323	A	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	1486352	rs909974	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	1486398	rs6600145	A	G	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	1486875	rs3751894	C	T	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	1488224	rs4984843	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	1488306	rs9924950	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	1488646	rs8054054	A	G	9977.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	1492660	rs760993	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	1493030	rs1883480	C	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:19,97:0.84:116
chr16	1493098	rs760994	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr16	1493130	rs760995	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr16	1493151	rs11641300	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.652;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr16	1493491	rs12929054	T	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.297;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr16	1493512	rs374630467	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.376;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	1493759	rs12596752	C	T	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:23,103:0.82:126
chr16	1497137	rs12599176	C	T	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:25,103:0.80:128
chr16	1498197	rs2235578	A	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr16	1498520	rs12597739	A	G	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr16	1499377	rs742408	C	T	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:50,134:0.73:184
chr16	1500708	rs61073146	G	GC	2562.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	1503879	rs2235579	T	A	11891.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:125,536:0.81:661
chr16	1504017	rs4786337	A	G	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	1504633	rs4265806	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	1505599	rs7190701	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr16	1507778	rs9922189	T	C	20217.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=811;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-0.220;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:2,798:1.00:800
chr16	1510567	rs2072950	T	G	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:58,149:0.72:207
chr16	1511552	rs2744994	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.961;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:82,15:0.15:97
chr16	1524085	rs55927314	C	CA	972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-1.456;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:30,68:0.69:98
chr16	1524261	rs28550432	G	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	1524774	rs150643839	G	GGCGC	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr16	1524850	rs3751884	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	1536047	rs59554810	T	C	6304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-0.154;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:114,295:0.72:409
chr16	1536114	rs79788206	C	A	16936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.25;ReadPosRankSum=0.967;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:162,417:0.72:579
chr16	1536117	rs58192896	G	A	17052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.15;ReadPosRankSum=1.282;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:164,421:0.72:585
chr16	1536323	rs2667671	A	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.707;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:212,63:0.23:275
chr16	1536380	rs2667672	G	T	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.211;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:290,104:0.26:394
chr16	1536499	rs2745097	G	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.425;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:212,69:0.25:281
chr16	1536535	rs2745098	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:163,52:0.24:215
chr16	1537414	rs56294663	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.856;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr16	1537432	rs368786490	C	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.476;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:89,36:0.29:125
chr16	1537455	rs2667673	T	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	1537693	rs61734779	C	A	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:5,198:0.98:203
chr16	1538263	rs72779260	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr16	1538330	rs180904866	A	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:153,67:0.30:220
chr16	1538363	rs1040499	C	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:314,118:0.27:432
chr16	1538460	rs111506404	A	G	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.795;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:706,184:0.21:890
chr16	1544301	rs2667660	GA	CG	15730.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;JOINED;set=Intersection	GT:AD:AF:DP	0/1:131,384:0.75:515
chr16	1547477	rs2745108	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.427;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr16	1551558	rs57600450	C	T	6638.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:73,288:0.80:361
chr16	1552454	rs2745109	T	C	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	1552876	rs2294603	C	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.378;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:230,49:0.18:279
chr16	1555589	rs2248128	A	G	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	1556500	rs45457991	A	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr16	1557090	rs11248882	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1557268	rs3736721	C	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-0.109;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:11,50:0.82:61
chr16	1557794	rs12927760	A	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,46:0.84:55
chr16	1559838	rs3180228	T	C	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr16	1559965	rs7191986	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:79,26:0.25:105
chr16	1560954	rs61749517	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr16	1568402	rs2076434	A	G	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:39,142:0.78:181
chr16	1570097	rs149277718	C	T	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.402;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:263,105:0.29:368
chr16	1570108	rs200660371	T	C	3552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.169;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:257,106:0.29:363
chr16	1570857	rs932391	T	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	1573485	rs34819117	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr16	1573810	rs2745176	A	G	13136.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr16	1574794	rs78178397	A	G	6012.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:107,283:0.73:390
chr16	1578252	rs68112448	C	G	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.675;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:321,86:0.21:407
chr16	1578304	rs147916170	CCA	C	3314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.722;QD=5.43;ReadPosRankSum=1.317;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:480,130:0.21:610
chr16	1578316	.	GCACGCATGCACGCACGTGTGCACACA	G	6409.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.366;QD=27.28;ReadPosRankSum=0.460;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:8,227:0.97:235
chr16	1578434	rs149176109	G	GCA	5299.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	1584446	rs1057612	G	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=3.292;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:132,39:0.23:171
chr16	1584618	rs2076438	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.517;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:89,28:0.24:117
chr16	1605051	rs9932984	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.878;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr16	1608005	rs34535263	A	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.329;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr16	1614097	rs8048410	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-1.483;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:196,33:0.14:229
chr16	1634385	rs34762152	C	T	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=1.095;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:257,81:0.24:338
chr16	1639793	rs12447357	C	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.316;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:153,27:0.15:180
chr16	1642423	rs2273679	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.877;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:89,25:0.22:114
chr16	1652614	rs2236269	T	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.780;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr16	1656765	rs2859310	A	G	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:212,60:0.22:272
chr16	1657034	rs34935994	CAT	C	1451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=7.063;QD=3.32;ReadPosRankSum=0.642;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:328,109:0.25:437
chr16	1657284	rs1894649	C	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.179;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr16	1660274	rs1057983	A	G	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.329;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:433,126:0.23:559
chr16	1662478	rs143265534	G	A	154.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.07;ReadPosRankSum=1.335;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr16	1664931	rs7201813	T	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	1682281	rs3169425	A	G	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	1687741	rs9941003	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.371;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr16	1691106	rs2072986	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	1691281	rs11865609	C	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.742;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr16	1695395	rs9928010	G	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,62:0.81:77
chr16	1697025	rs13336131	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.343;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:158,44:0.22:202
chr16	1712386	rs17135479	T	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.225;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr16	1716010	rs8058190	A	C	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	1716294	rs11861975	A	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.178;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:127,31:0.20:158
chr16	1720844	rs2272893	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	1720875	rs36064904	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr16	1730470	rs7200097	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.593;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr16	1733351	rs12719794	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	1733479	rs113851179	C	CT	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.380;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:115,33:0.22:148
chr16	1735671	rs34148924	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-0.243;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr16	1749358	rs10771	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.155;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr16	1779399	rs11248888	C	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=6.051;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.841;QD=2.75;ReadPosRankSum=-0.137;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:120,36:0.23:156
chr16	1779444	rs34520001	A	AG	926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.269;QD=2.79;ReadPosRankSum=2.251;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:278,54:0.16:332
chr16	1785165	rs144751105	CTG	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr16	1797050	rs2294613	C	T	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.280;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:266,63:0.19:329
chr16	1810116	rs57876690	C	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr16	1813523	rs3751828	G	A	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:18,76:0.81:94
chr16	1814019	rs2974846	G	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	1814440	rs2294619	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr16	1814964	rs2294621	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:17,72:0.81:89
chr16	1815337	rs2917508	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=2.534;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr16	1817754	rs2076427	A	G	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:44,163:0.79:207
chr16	1817768	rs2076428	T	G	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:38,167:0.81:205
chr16	1817935	rs2076429	A	C	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:74,221:0.75:295
chr16	1818152	rs2076430	CT	TC	15925.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;JOINED;set=Intersection	GT:AD:AF:DP	0/1:107,386:0.78:493
chr16	1818503	rs2076431	G	C	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:60,130:0.68:190
chr16	1818680	rs2072989	G	C	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:49,227:0.82:276
chr16	1820992	rs11890	T	A	8557.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:127,393:0.76:520
chr16	1826011	rs80194604	C	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.519;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:272,56:0.17:328
chr16	1826377	rs2235636	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr16	1827836	rs1178432	T	C	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	1833079	rs115879663	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr16	1836709	rs2575351	G	C	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.43;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	1836709	.	GG	CA,CG	1323	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=9;MMLQ=19;MQ=60.0;NF=17,69;NR=24,83;PP=438,1323;QD=11.9870213381;SC=CCCGCATCCCGGTGGAGGCCT;SbPval=0.71;Source=Platypus;TC=154;TCF=71;TCR=83;TR=41,152;WE=1836718;WS=1836699;set=Platypus	GT:AF:DP	0/1:0.27:154
chr16	1836710	rs79769512	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.560;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:176,86:0.33:262
chr16	1837900	rs344358	T	C	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	1838543	rs58637729	C	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:14,53:0.79:67
chr16	1838640	rs344359	T	C	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	1838836	rs1065656	C	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr16	1841033	rs17559	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr16	1842209	rs3751893	A	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	1843494	rs3817899	G	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-2.202;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr16	1843549	rs3817900	T	C	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.073;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr16	1843557	rs3817901	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-1.070;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr16	1843672	rs3817902	T	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	1844781	rs2256923	A	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	1844801	rs9924224	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:80,17:0.18:97
chr16	1844872	rs3829561	G	A	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.070;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:157,50:0.24:207
chr16	1844875	rs3829562	G	A	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=1.277;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:161,50:0.24:211
chr16	1859150	rs1057071	G	A	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	1859153	rs1057070	T	C	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	1859432	rs1628812	G	C	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	1859476	rs1629513	G	A	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.19;SOR=1.925;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	1859476	.	GAGCCCA	AAGCCCA,AAGCCCC	797	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=28;MQ=60.0;NF=14,8;NR=56,41;PP=50,797;QD=1.2110173221;SC=CGTGCTGGCCGAGCCCAGCCC;SbPval=0.52;Source=Platypus;TC=70;TCF=14;TCR=56;TR=70,49;WE=1859490;WS=1859466;set=Platypus	GT:AF:DP	0/1:1.00:70
chr16	1859482	rs1629534	A	C	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=5.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-0.172;SOR=1.613;set=HC	GT:AD:AF:DP	0/1:21,68:0.76:89
chr16	1859730	rs2745199	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=1.679;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1859850	rs1742442	A	G	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	1872160	rs238680	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=1.177;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr16	1872459	rs8045169	C	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:60,15:0.20:75
chr16	1872479	rs238679	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.896;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr16	1873087	rs104843	C	A	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr16	1876944	rs13330675	G	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.384;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:158,41:0.21:199
chr16	1876949	rs7188401	G	C	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	1877698	rs3743852	C	G	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:62,220:0.78:282
chr16	1877913	rs13166	C	G	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,106:0.76:139
chr16	1884501	rs171162	A	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr16	1894912	rs9806826	C	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.870;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:16,44:0.73:60
chr16	1902889	rs1617255	T	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1902901	rs7187251	A	T	88.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	1903138	rs76370825	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr16	1907652	rs428123	G	A	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	1907701	rs408286	AG	CA	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	1907946	rs411193	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	1910219	rs391288	A	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1910263	rs7185434	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.584;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	1910373	rs433268	C	G	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	1912021	rs1657125	T	G	3867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=1.167;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:48,181:0.79:229
chr16	1912139	rs380846	T	C	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	1912205	rs1657126	T	C	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=1.983;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr16	1915886	rs58422887	T	A	256.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr16	1917998	rs1742444	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	1918094	rs78268797	T	G	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:39,119:0.75:158
chr16	1918125	rs1742446	T	G	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	1961674	rs337285	G	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:110,45:0.29:155
chr16	1962046	rs1742399	CG	TA	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.516;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=2.222;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:314,60:0.16:374
chr16	1962132	rs8055325	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.211;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:305,76:0.20:381
chr16	1990994	rs13331553	T	C	24962.77	.	AC=2;AF=1.00;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	1/1:0,951:1.00:951
chr16	1994743	rs2754179	G	A	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	1994749	rs2531332	A	C	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	1994931	rs61276345	C	CAAGAG	9323.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	1994980	rs11640479	G	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	1994992	rs60819893	G	GC	2058.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr16	1996075	rs1003904	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	1996535	rs35725974	C	CA	2872.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	1997113	rs45467097	G	A	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr16	2002835	rs13334737	C	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr16	2003113	rs142776611	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr16	2004718	rs2815301	T	C	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	2011126	rs758335	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	2014031	rs6366	C	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	2014283	rs2286466	A	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=26.20;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	2014435	rs375992488	GTGGCTGA	G	2814.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr16	2018580	rs62038784	G	A	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:47,177:0.79:224
chr16	2024131	rs3743851	T	C	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	2024355	rs3743850	G	T	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.353;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:326,81:0.20:407
chr16	2025206	rs8053843	A	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=2.411;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:229,65:0.22:294
chr16	2028022	rs139303832	C	T	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:44,212:0.83:256
chr16	2028402	rs8460	A	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	2030029	rs34358073	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.608;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr16	2034661	rs2075812	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,67:0.75:89
chr16	2035868	rs1046502	C	T	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:92,294:0.76:386
chr16	2039658	rs80281205	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr16	2048751	rs149527164	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr16	2048826	rs2240691	C	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;MQ=59.69;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	2049003	rs2286468	A	T	4630.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:46,207:0.82:253
chr16	2049640	rs2286469	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr16	2049882	rs61746014	G	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.332;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr16	2050221	rs114962618	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.091;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr16	2050346	rs3743846	A	G	16866.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:2,669:1.00:671
chr16	2050910	rs11413382	C	CA	604.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr16	2050917	rs142385527	C	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=12.788;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.000;QD=26.89;ReadPosRankSum=1.552;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	2050941	rs8046471	A	C	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=14.289;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=17.22;ReadPosRankSum=3.323;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	2050951	rs8050923	TA	CG	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=45.34;SOR=2.035;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	2051240	rs115067888	T	C	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,88:0.75:118
chr16	2051428	rs72766631	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.530;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:141,46:0.25:187
chr16	2059621	rs11366527	GC	G	5551.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.165;QD=33.24;ReadPosRankSum=1.639;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,166:0.99:167
chr16	2059674	rs71384660	T	C	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.15;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	2059698	rs71384661	T	G	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	2059708	rs71384662	T	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	2059710	rs71384663	T	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.90;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	2059736	rs71148116	CG	C	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.91;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	2059939	rs968418	A	C	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr16	2059955	rs62038790	A	G	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr16	2070568	rs2286472	A	C	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.810;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:462,113:0.20:575
chr16	2075598	rs73496086	C	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.019;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:168,44:0.21:212
chr16	2077090	rs73496087	G	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr16	2079564	rs115604506	T	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr16	2079804	rs7203909	A	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:140,60:0.30:200
chr16	2086535	rs41286703	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr16	2087460	rs12447809	G	T	2557.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	2087658	rs12445258	A	G	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	2087785	rs34165865	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:32,113:0.78:145
chr16	2088222	rs369719523	CAG	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=2.304;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr16	2088312	rs11876	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr16	2088347	rs141052657	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-2.390;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr16	2088401	rs150212258	AC	A	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	2105335	rs2516734	C	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr16	2105400	rs1800720	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr16	2110571	rs2074968	C	G	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr16	2111779	rs17135764	T	C	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr16	2115413	.	CAA	C	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.106;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr16	2120402	rs7187438	T	C	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.060;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:146,51:0.26:197
chr16	2122128	rs6600185	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	2122822	rs7196184	A	G	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	2124481	rs112578519	T	TG	392.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr16	2125788	rs13331451	C	T	11423.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	2125834	rs13337626	T	C	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.764;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:467,131:0.22:598
chr16	2125937	rs1800715	C	G	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	2128915	rs9925571	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr16	2133333	rs13335062	C	T	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:45,161:0.78:206
chr16	2133727	rs11551373	G	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.317;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr16	2136476	rs142421783	CA	C	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr16	2138218	rs1800718	A	C	18844.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=0.453;SOR=0.240;set=HC	GT:AD:AF:DP	1/1:1,725:1.00:726
chr16	2138269	rs1748	T	C	17313.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,660:1.00:660
chr16	2138398	rs13332221	C	T	17720.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:1,410:1.00:411
chr16	2138422	rs13332222	C	G	20814.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr16	2138637	rs13332015	G	A	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:31,120:0.79:151
chr16	2140010	rs7203729	A	G	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	2140454	rs3087632	T	C	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	2140680	rs10960	T	C	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	2141396	rs11866494	C	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	2143501	rs36224524	CAA	C	1599.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr16	2143753	rs7192711	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:198,77:0.28:275
chr16	2144176	rs34197769	G	A	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.423;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:412,144:0.26:556
chr16	2144299	rs34123233	T	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	2147357	rs7194935	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.670;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:303,73:0.19:376
chr16	2152651	rs9928278	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.145;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr16	2159996	rs9935526	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=1.100;QD=14.07;ReadPosRankSum=0.149;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr16	2160503	rs71385734	T	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr16	2161233	rs142129358	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr16	2203106	rs116563915	C	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.031;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:275,61:0.18:336
chr16	2203456	rs26931	T	C	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	2216073	rs8062006	G	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	2233557	rs116507463	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.382;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	2233565	rs889495	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2236955	rs149073868	G	T	4742.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:36,205:0.85:241
chr16	2255804	rs3214648	TG	T	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	2259766	rs26858	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr16	2259865	rs25852	C	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	2260567	rs26857	C	T	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:50,191:0.79:241
chr16	2260612	rs26856	T	C	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:47,156:0.77:203
chr16	2264530	rs78258383	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.026;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr16	2282256	rs26839	G	A	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	2284515	rs3114131	C	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2287215	rs160550	G	A	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr16	2288224	rs27620	G	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	2288345	rs160551	C	T	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	2294355	rs160555	T	C	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	2304108	rs160549	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.638;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:145,51:0.26:196
chr16	2312453	rs155248	C	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:148,55:0.27:203
chr16	2313343	rs40342	C	T	3179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=1.532;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:38,144:0.79:182
chr16	2314401	rs161431	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr16	2318327	rs161430	C	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr16	2328790	rs150928	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr16	2328889	rs7190259	T	C	4531.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:78,211:0.73:289
chr16	2329171	rs7188263	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr16	2331430	rs149532	A	G	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr16	2339629	rs45502600	G	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr16	2339714	rs323017	T	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr16	2349371	rs170447	T	C	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:26,94:0.78:120
chr16	2367509	rs323066	G	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:96,40:0.29:136
chr16	2369485	.	CA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=2.607;QD=2.27;ReadPosRankSum=-0.292;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr16	2373484	rs45517732	A	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	2373687	rs74002800	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	2378296	rs45613834	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr16	2479712	rs13337091	A	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	2485620	rs146413013	ACACACACACATATATATG	A	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	2485665	rs147350588	CACATATATATATATATAT	C	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	2485896	rs12928789	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	2486998	rs12921396	A	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	2487012	rs34456414	C	CT	2383.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	2488211	rs12926008	T	C	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	2489533	rs28647184	T	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	2498828	rs28417759	A	G	8984.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:2,362:0.99:364
chr16	2498849	rs28670436	G	A	10675.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	2499011	rs8060813	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.995;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	2499786	.	G	GTCCCCTCCA	12246.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.15;MQRankSum=1.306;QD=41.51;ReadPosRankSum=-0.559;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:3,292:0.99:295
chr16	2503341	rs200571246	T	C	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.128;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:335,108:0.24:443
chr16	2510603	rs4786284	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	2523002	rs113551249	G	T	2532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.395;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:778,213:0.21:991
chr16	2523274	rs34818219	C	T	2486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DB;DP=1032;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.999;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:813,216:0.21:1029
chr16	2546119	rs13339105	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-1.830;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:83,35:0.30:118
chr16	2546356	rs13339237	T	C	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.327;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:271,87:0.24:358
chr16	2546934	rs201060500	C	T	7349.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:114,337:0.75:451
chr16	2548110	.	G	A	532.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr16	2549995	rs113737197	AC	A	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.808;QD=4.86;ReadPosRankSum=-1.398;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:119,37:0.24:156
chr16	2550393	rs202216463	C	A	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.279;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:408,120:0.23:528
chr16	2578975	rs74003021	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:87,30:0.26:117
chr16	2579366	rs77309966	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.234;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr16	2579492	rs142291569	C	T	6665.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:92,304:0.77:396
chr16	2579667	rs75096863	T	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr16	2580912	rs13331643	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:109,37:0.25:146
chr16	2581080	rs75801560	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:60,16:0.21:76
chr16	2582039	rs13332060	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:122,52:0.30:174
chr16	2587969	.	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-0.819;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	2587994	rs191389305	A	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=1.383;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	2642894	rs148991282	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.075;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:108,26:0.19:134
chr16	2645965	rs1005273	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	2692857	.	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-2.338;QD=14.19;ReadPosRankSum=0.641;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr16	2747815	.	A	G	597.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr16	2763321	rs11861927	C	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr16	2763995	rs140654864	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.503;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr16	2802684	rs2240146	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	2808363	rs3094778	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr16	2812647	rs2240142	C	T	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.079;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:283,83:0.23:366
chr16	2812890	rs2240141	A	G	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:40,175:0.81:215
chr16	2814162	rs3094775	G	A	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:38,104:0.73:142
chr16	2815237	rs3094773	A	C	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	2818161	rs2301802	T	C	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:54,176:0.77:230
chr16	2818704	rs3094792	T	G	6429.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:120,299:0.71:419
chr16	2820882	rs1050134	G	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.150;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr16	2821525	rs4036	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.750;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:197,44:0.18:241
chr16	2822174	rs2285877	G	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=1.403;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:208,69:0.25:277
chr16	2825594	rs3094774	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,48:0.74:65
chr16	2834826	rs12931183	A	G	3656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.500;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:52,169:0.76:221
chr16	2835189	rs12599918	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	2835579	rs7202954	G	A	528.78	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr16	2836027	rs7195287	T	G	4628.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:52,199:0.79:251
chr16	2836651	rs1990265	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:4,46:0.92:50
chr16	2837521	rs77705404	G	C	12513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-2.811;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:186,584:0.76:770
chr16	2837592	rs34341809	T	G	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.538;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:186,70:0.27:256
chr16	2848640	rs370894052	C	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.272;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:122,27:0.18:149
chr16	2848986	rs58782004	G	T	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	2854594	rs11864061	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-0.353;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	2867530	rs111876704	GA	G	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	2868641	rs2074907	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr16	2868783	rs2074906	A	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.204;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:212,53:0.20:265
chr16	2871121	rs11076844	T	C	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	2871555	rs10641	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.375;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:143,60:0.30:203
chr16	2880614	rs2190809	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	2880870	rs2240614	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	2882197	rs12373	G	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	2891540	rs11859372	C	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.342;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:103,46:0.31:149
chr16	2891635	rs11860210	C	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=8.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.222;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:296,72:0.20:368
chr16	2892370	rs3810801	C	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:163,60:0.27:223
chr16	2892454	.	C	T	4647.77	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:67,213:0.76:280
chr16	2903047	rs1054912	G	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr16	2903081	rs3743944	G	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.464;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr16	2903845	rs2074294	G	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.598;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr16	2949248	rs7281	T	C	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:30,79:0.72:109
chr16	2949269	.	C	CT	130.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.624;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr16	2972698	rs35374464	C	G	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:39,123:0.76:162
chr16	2973035	rs189224562	A	G	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:44,108:0.71:152
chr16	2973088	rs36122103	G	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:44,124:0.74:168
chr16	2973249	rs11642228	T	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	2980276	rs77106853	T	C	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:30,83:0.73:113
chr16	2980365	rs76343455	T	C	9623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-1.665;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:132,441:0.77:573
chr16	2983138	rs2074363	C	T	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:57,237:0.81:294
chr16	2983483	rs2074362	C	G	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:22,110:0.83:132
chr16	2986233	rs9933986	G	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr16	2986289	rs9921808	C	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:18,91:0.83:109
chr16	2986323	rs9928222	T	C	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:57,197:0.78:254
chr16	2986840	rs2074358	G	C	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:75,259:0.78:334
chr16	2987002	rs2074357	C	T	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,98:0.74:132
chr16	2998629	rs8050688	T	G	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	3014412	rs1076231	G	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-2.477;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr16	3016885	rs58462745	A	G	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	3017124	rs11641195	C	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,85:0.74:115
chr16	3017436	rs115715170	C	A	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	3017781	rs11861396	C	G	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.969;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:255,89:0.26:344
chr16	3017854	rs11866302	G	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=20.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.309;SOR=1.998;set=HC	GT:AD:AF:DP	0/1:144,37:0.20:181
chr16	3018328	rs7203326	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.612;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr16	3018607	rs7184103	T	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	3021116	rs4786365	T	C	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	3024188	rs2074528	T	C	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	3071420	rs2232798	T	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:81,27:0.25:108
chr16	3072801	rs116545155	G	C	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:24,85:0.78:109
chr16	3073240	rs10508	G	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=3.443;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:62,19:0.23:81
chr16	3075999	rs2245000	C	G	7631.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:83,324:0.80:407
chr16	3077710	rs56382043	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.529;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr16	3078544	rs2079244	T	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:11,51:0.82:62
chr16	3081049	rs61747753	G	A	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-1.771;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:375,121:0.24:496
chr16	3086813	.	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.070;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	3097596	rs3743936	T	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:11,54:0.83:65
chr16	3106994	rs1064948	A	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	3107696	rs115514829	A	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:19,76:0.80:95
chr16	3115947	rs114106725	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.439;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr16	3117272	.	C	CTG,CTGTG	262	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.4996,0.5004;HP=2;HapScore=3;MGOF=14;MMLQ=25;MQ=59.21;NF=4,4;NR=4,4;PP=25,262;QD=3.5;SC=CCATGTGTCTCTGTGTGTGTG;SbPval=0.58;Source=Platypus;TC=15;TCF=8;TCR=7;TR=8,8;WE=3117280;WS=3117262;set=Platypus	GT:AF:DP	0/1:0.53:15
chr16	3117937	rs2239303	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-2.638;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr16	3118340	rs113041230	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.000;QD=16.44;ReadPosRankSum=0.665;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr16	3118865	rs12934561	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	3118884	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr16	3118923	rs113049976	T	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.831;MLEAC=1;MLEAF=0.500;MQ=50.87;MQRankSum=2.183;QD=4.08;ReadPosRankSum=1.483;SOR=1.747;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr16	3119020	rs371244098	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=45.32;MQRankSum=2.115;QD=13.78;ReadPosRankSum=-2.716;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr16	3119167	rs34184287	T	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=50.51;MQRankSum=-0.813;QD=9.16;ReadPosRankSum=0.206;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:53,42:0.44:95
chr16	3119297	rs71818662	C	CG	2821.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:214,86:0.29:300
chr16	3119304	rs2981599	A	G	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:225,84:0.27:309
chr16	3131527	rs11860809	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr16	3131566	rs2741927	G	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=1.381;QD=3.41;ReadPosRankSum=2.037;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr16	3131663	rs4247354	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=14.956;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-3.606;QD=3.05;ReadPosRankSum=-0.168;SOR=3.893;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr16	3131937	rs191732434	A	C	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=15.455;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-6.615;QD=12.77;ReadPosRankSum=-4.335;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	3131940	rs58826170	C	CGG	977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=15.455;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-6.719;QD=13.04;ReadPosRankSum=-3.573;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	3142443	rs147058839	TG	T	4685.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:62,148:0.70:210
chr16	3142463	rs3810807	A	G	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	3165425	rs909410	A	G	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:35,117:0.77:152
chr16	3166587	rs224178	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.101;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr16	3168836	rs224181	T	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=6.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.492;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:232,42:0.15:274
chr16	3170188	rs12032	C	T	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.260;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:602,169:0.22:771
chr16	3187431	rs7197270	A	G	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:48,147:0.75:195
chr16	3187733	rs7198126	G	C	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr16	3191356	rs2735537	G	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:16,69:0.81:85
chr16	3196108	rs74699373	C	T	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=2.885;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:299,97:0.24:396
chr16	3197944	rs74353716	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,32:0.28:116
chr16	3197957	rs149474142	C	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr16	3254235	rs60611456	G	A	13070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.31;ReadPosRankSum=1.513;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:122,324:0.73:446
chr16	3254245	rs57224133	C	T	13288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.70;ReadPosRankSum=2.161;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:127,336:0.73:463
chr16	3254470	rs1834026	T	C	20495.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;MQRankSum=-0.253;QD=25.37;ReadPosRankSum=1.631;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:2,806:1.00:808
chr16	3254566	rs61731435	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.157;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:319,86:0.21:405
chr16	3254972	rs2075851	T	C	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.211;QD=4.72;ReadPosRankSum=1.942;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:208,85:0.29:293
chr16	3266071	rs2550401	A	G	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.137;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:545,130:0.19:675
chr16	3266130	rs111610055	C	T	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.778;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:709,150:0.17:859
chr16	3266552	rs2741916	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-2.526;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr16	3273964	rs150911467	T	C	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.024;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:331,101:0.23:432
chr16	3282422	rs61731424	C	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-2.440;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:198,56:0.22:254
chr16	3282707	rs76198203	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.223;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:58,10:0.15:68
chr16	3293132	rs11466048	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.489;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr16	3293808	rs11466046	G	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr16	3293888	rs1231122	C	T	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	3293922	rs1231123	A	T	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:53,162:0.75:215
chr16	3294678	rs1231124	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	3297073	rs224206	A	G	1768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.064;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:394,135:0.26:529
chr16	3299749	rs224213	G	A	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.549;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:284,84:0.23:368
chr16	3301897	rs224218	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.74;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	3302051	rs74268718	TAA	T	209.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-1.194;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	3304573	rs224223	G	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	3304654	rs224224	T	C	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	3304762	rs224225	A	G	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	3405875	rs1009429	T	C	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	3405986	rs1218762	G	A	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.30;SOR=1.468;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	3405994	rs1228348	A	G	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.92;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	3406387	rs1218763	C	G	10323.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	3406446	rs62000973	G	A	8585.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:115,386:0.77:501
chr16	3406477	rs115378494	C	T	7641.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:90,341:0.79:431
chr16	3406516	rs11643487	A	G	10458.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr16	3406564	rs62000974	A	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-2.888;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:238,51:0.18:289
chr16	3406626	rs11648783	G	A	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	3433146	rs141657089	G	A	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.608;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:208,60:0.22:268
chr16	3434724	rs34097514	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.032;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:118,24:0.17:142
chr16	3440394	rs27237	A	G	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	3441638	rs149452781	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	3441697	rs7204842	A	C	1836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.25;ReadPosRankSum=1.598;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:2,77:0.97:79
chr16	3446545	rs114352030	C	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.260;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:277,63:0.19:340
chr16	3446613	rs116456533	T	G	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.016;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:271,88:0.25:359
chr16	3447102	rs142198685	G	GT	2668.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr16	3447282	rs27241	C	G	4229.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:48,181:0.79:229
chr16	3447500	rs140432239	G	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.043;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:185,34:0.16:219
chr16	3447695	rs78984889	C	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr16	3452193	rs37811	T	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	3452453	rs377727247	C	CTT	2030.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=1.820;QD=17.06;ReadPosRankSum=-0.225;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:21,98:0.82:119
chr16	3452479	rs140827291	G	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.717;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.501;QD=3.26;ReadPosRankSum=0.129;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr16	3455079	rs37813	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	3458219	rs37819	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	3493102	rs13332163	A	C	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:95,239:0.72:334
chr16	3493240	rs3816916	A	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:112,35:0.24:147
chr16	3493301	rs7500590	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr16	3533577	rs1137454	C	G	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	3534780	rs34464545	C	G	12470.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr16	3534934	rs74870422	T	C	14021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-0.002;SOR=0.545;set=HC	GT:AD:AF:DP	1/1:3,548:0.99:551
chr16	3535116	rs4785936	T	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	3543822	rs190822077	C	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	3544040	rs56793723	G	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	3544512	rs61731450	G	C	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	3544586	rs61731451	C	T	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	3550998	rs79384355	T	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	3551067	rs78552393	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	3551143	rs115697151	C	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	3554799	rs34672214	T	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	3554840	rs80187466	G	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	3556473	rs75575487	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	3556498	rs78851263	T	A	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	3558283	rs59492947	A	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	3562578	rs115948598	A	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	3565675	rs59701722	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	3565721	rs58503092	CA	C	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	3576396	rs2285880	A	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	3576475	rs35603863	A	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	3576552	rs73503367	G	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	3580516	rs115552152	C	T	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	3580565	rs79684678	T	C	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	3582969	rs3751836	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	3592165	rs79724354	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	3593560	rs56108616	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	3594296	rs35402060	C	T	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	3598868	rs116156176	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	3602227	rs56070390	AG	A	3859.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	3605924	.	AAAATAAATAAATAAATAAAT	A	2179.73	.	AC=2;AF=1.00;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	3606947	rs116349864	G	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	3607180	rs79036469	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	3613004	rs8044546	A	G	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	3613150	rs8044743	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	3613207	rs9940099	G	T	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr16	3613270	rs114956512	G	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,191:0.99:193
chr16	3613867	rs146281357	C	T	8002.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	3613928	rs45483498	A	G	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	3615144	rs75627281	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	3615470	.	CAAAAAAAAAA	C	129.74	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.000;QD=25.95;SOR=3.229;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	3627017	rs56093151	G	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	3632335	rs3751839	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	3632755	.	A	AG	7448.73	.	AC=2;AF=1.00;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	3632774	rs75990295	A	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	3634691	rs74762428	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	3639039	rs78770603	C	T	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	3639058	rs78635099	C	T	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	3639139	rs3810812	A	G	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	3639571	rs115491049	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	3639856	rs77699867	C	T	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	3640274	rs714181	G	A	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	3640785	rs59939128	C	T	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	3644397	rs80020184	G	A	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	3647787	rs76350200	A	G	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr16	3650970	rs80116508	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	3658630	rs79126454	C	T	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr16	3706185	rs8176928	A	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	3706238	rs114579045	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	3707409	rs1799892	G	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	3707747	rs1053874	G	A	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	3708130	rs140188034	T	G	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	3708282	rs35081909	AT	A	1368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.260;QD=11.04;ReadPosRankSum=0.283;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:26,98:0.79:124
chr16	3708691	.	C	A	983.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.08;MQRankSum=1.583;QD=37.84;ReadPosRankSum=0.761;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr16	3708691	.	CA	AA	631	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=1.0000,1.0000;HP=8;HapScore=2;MGOF=70;MMLQ=27;MQ=65.51;NF=18,13;NR=3,2;PP=631,300;QD=31.7033910737;SC=AACAAACAAACAAAAAGACAG;SbPval=0.55;Source=Platypus;TC=22;TCF=19;TCR=3;TR=21,15;WE=3708699;WS=3708687;set=Platypus	GT:AD:AF:DP	0/1:1,21:0.95:22
chr16	3708691	.	CA	CAA	631	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=1.0000,1.0000;HP=8;HapScore=2;MGOF=70;MMLQ=27;MQ=65.51;NF=18,13;NR=3,2;PP=631,300;QD=31.7033910737;SC=AACAAACAAACAAAAAGACAG;SbPval=0.55;Source=Platypus;TC=22;TCF=19;TCR=3;TR=21,15;WE=3708699;WS=3708687;set=Platypus	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	3716183	rs145767341	G	A	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	3721901	rs183271733	T	C	9313.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-0.154;SOR=0.398;set=HC	GT:AD:AF:DP	1/1:1,365:1.00:366
chr16	3724330	rs190882078	A	G	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	3724465	rs13926	G	C	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	3724510	rs114495829	C	T	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	3726160	rs8050400	A	G	3783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.040;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=-0.942;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:1,148:0.99:149
chr16	3727411	rs150963093	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	3738887	rs2072379	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	3739243	.	CTT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-0.402;QD=4.37;ReadPosRankSum=0.342;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr16	3767650	.	C	T	88.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	3777690	rs142721165	GA	G	9310.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr16	3777697	rs2230140	A	G	9884.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr16	3785964	rs190572852	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	3789537	rs129967	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	3795363	rs3025684	G	A	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	3808052	rs75459669	TA	T	383.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.103;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr16	3811556	rs886528	A	G	7508.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	3811596	rs11076786	C	T	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	3819134	rs76231065	T	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	3828585	rs8052927	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	3860640	rs3025702	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	4039141	rs2072341	A	G	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	4165432	rs2530898	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	4242093	rs8051399	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	4245393	rs11076822	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	4245426	rs11076823	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	4245693	rs10852643	A	G	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	4254479	rs4644864	G	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	4254523	rs60137128	C	T	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr16	4254699	rs62039297	G	A	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	4254725	rs8054937	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	4258173	rs889807	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	4308032	rs78379133	G	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	4310468	rs251732	C	G	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr16	4386814	rs669561	T	C	15429.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr16	4391040	rs2072151	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	4431202	rs758044	A	G	16517.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,640:1.00:640
chr16	4432029	rs3810818	A	C	12922.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr16	4445327	rs3747579	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	4455675	rs3747580	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	4475868	rs2304631	A	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	4476089	rs1139652	T	C	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	4484328	rs4785962	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	4484396	rs1139653	A	T	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	4484613	rs4785964	A	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	4494549	rs12446640	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	4496973	rs2304633	T	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	4500544	rs2304634	C	T	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	4511926	rs3747582	G	A	8740.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-1.010;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:2,338:0.99:340
chr16	4516092	rs3747584	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	4519548	rs62039231	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	4524060	rs3761680	C	A	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	4559351	.	TA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.319;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr16	4562351	rs8129	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	4562512	rs7665	A	G	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr16	4621725	rs35531180	GA	G	2833.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	4625126	rs9673241	G	A	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	4641814	rs5815211	AG	A	1272.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	4649955	rs11076843	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	4649965	rs7403819	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	4660342	rs841184	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	4664412	rs138923012	T	TG	309.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	4664833	rs860889	T	G	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	4674954	rs3747587	C	G	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	4675116	rs1386092	G	T	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	4700318	.	CAA	C	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.731;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	4707432	rs3747590	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr16	4790059	rs111697257	C	CAA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.604;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	4796871	rs2341988	A	G	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	4797109	rs12926158	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	4812816	rs2290561	G	A	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	4815425	rs4786548	T	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	4815608	rs4786549	A	G	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	4861709	rs2085329	G	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	4873743	.	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.941;QD=1.66;ReadPosRankSum=0.284;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr16	4927402	rs367848284	G	A	11743.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr16	4933939	rs2037912	G	C	8663.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr16	4934549	rs1049208	G	A	13555.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	4934564	rs1049207	C	G	13961.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	4938160	rs2734742	T	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	4938280	rs2075637	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	4938321	rs2075636	A	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	4939225	.	G	GTT	73	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=7;HapScore=2;MGOF=28;MMLQ=21;MQ=50.33;NF=0;NR=1;PP=73;QD=94.0;SC=GCAAAAGGCAGTTTTTTTGTT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=1;WE=4939233;WS=4939215;set=Platypus	GT:AD:AF:DP	1/1:3,1:0.25:4
chr16	4940387	rs11644917	G	A	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	4940809	rs2471844	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr16	4940989	rs2471843	A	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	4940994	rs760118	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	4942099	rs1049205	C	T	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	4944518	rs1876363	C	G	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	4945221	rs12709119	A	G	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	4947534	rs8051246	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	4948936	rs12443906	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	4952598	rs2048098	C	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	4961003	rs8057613	A	G	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	5009433	rs7200245	G	A	4988.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.603;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:2,197:0.99:199
chr16	5009605	rs61423624	C	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	5037498	.	TG	T	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.836;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:137,64:0.32:201
chr16	5037523	rs80095370	C	G	8684.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.423;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.76;ReadPosRankSum=0.748;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,301:1.00:302
chr16	5040970	rs201747029	CT	C	2133.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	5041778	rs2972265	T	C	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	5046202	rs2908676	T	A	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	5046208	rs2908675	C	A	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.02;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	5046241	rs60492913	C	T	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	5055941	rs3815491	C	T	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	5056103	rs2302556	G	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	5061085	rs2908669	A	C	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	5061287	rs7197329	C	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,136:0.99:138
chr16	5064983	rs59506975	G	A	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	5075542	rs887854	G	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	5077897	rs112669475	G	A	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	5078841	rs1995278	T	C	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	5083483	rs2972272	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	5105359	rs2291954	T	C	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	5105440	rs741166	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	5105782	rs79730909	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	5105939	.	CGTGTGTGTGTGT	C	368.74	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	5106184	rs741164	C	T	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	5106279	rs77462052	C	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	5108720	rs759204	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	5122072	rs112683515	G	GGTCT	6919.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	5122191	rs34061670	C	CG	1891.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	5125365	rs4786590	C	T	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	5127335	rs11076869	T	A	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	5517175	rs34212245	T	TTC	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr16	5649140	rs71404537	T	TTAGGAAA	12068.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	6533549	rs7187508	C	A	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	7102147	rs8046264	G	A	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	7102285	rs6500906	G	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	7637217	rs35434610	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	7680710	rs200640782	T	C	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr16	7715108	rs8064206	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	7743418	rs60812796	C	CT	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.650;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:22,46:0.68:68
chr16	7759164	rs7196923	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	7759206	rs62011897	G	T	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	7760846	.	T	TA	39	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.9958;HP=14;HapScore=2;MGOF=13;MMLQ=26;MQ=61.78;NF=0;NR=4;PP=39;QD=10.75;SC=TTAGCAACTCTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=7760854;WS=7760836;set=Platypus	GT:AD:AF:DP	1/0:2,4:0.67:6
chr16	8619750	rs7198383	C	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr16	8620096	rs9922116	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	8728953	rs1731044	C	T	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	8729254	rs3108687	C	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	8729275	rs1641040	T	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	8729323	rs1731043	A	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	8732733	rs1362345	C	G	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	8732882	rs5815485	CA	C	3415.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	8733071	rs1641048	A	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	8734807	rs62030896	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=42.98;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	8734811	rs62030897	A	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=43.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	8734830	.	G	GCTGT	1234.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	8735120	rs8062990	T	C	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	8735200	rs8045911	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	8735212	rs1629322	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	8735245	rs1641055	C	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	8735355	rs1641056	A	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	8736028	rs1614616	T	C	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	8736150	rs1615559	A	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	8736246	rs1731007	G	A	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	8736263	rs7197891	C	T	7475.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.78;ReadPosRankSum=-1.753;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:2,288:0.99:290
chr16	8736499	rs1618219	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	8738350	rs11645418	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.261;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	8738398	rs1641065	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	8738427	rs1641066	T	C	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	8738499	rs1731000	G	A	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	8738579	rs1641067	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	8738622	rs9933132	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	8739954	rs1641070	G	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	8740015	rs1730994	A	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	8740418	rs1641072	T	C	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	8740503	rs1730992	G	A	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	8740653	rs1641073	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	8832479	rs57866199	G	T	203.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=8.14;ReadPosRankSum=4.193;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	8832485	rs201922810	G	T	203.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=8.14;ReadPosRankSum=2.237;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	8832515	.	C	T	324	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=2;MGOF=115;MMLQ=27;MQ=57.59;NF=3;NR=9;PP=324;QD=29.8976010456;SC=GTATGTGTGTCTGAGATGGAG;SbPval=0.6;Source=Platypus;TC=12;TCF=3;TCR=9;TR=12;WE=8832523;WS=8832505;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	8839954	rs1731017	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	8858580	rs2302608	T	A	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	8858700	rs112675542	GCA	G	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.240;QD=2.61;ReadPosRankSum=0.531;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:271,71:0.21:342
chr16	8861847	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.63;ReadPosRankSum=2.771;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr16	8862212	rs8049072	C	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	8862506	rs1273406	C	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	8862592	rs1273407	T	C	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	8866582	rs9937726	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	8896094	rs2304469	G	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	8904877	rs34742119	T	TATG	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	8905054	rs11074924	T	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	8907145	rs9924186	G	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	8948974	rs6898	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	8952248	rs988065	A	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	8989403	rs1677473	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	8992868	rs2437724	AC	CA	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	8995156	rs73498861	A	C	205.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=8.625;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.141;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr16	8995177	rs60094465	GA	G	139.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.198;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	9004564	rs2447916	C	A	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	9010213	rs7195624	T	G	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	9010446	rs57510291	A	AC	2655.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	9014350	rs1677470	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	9014385	rs7189170	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	9014434	rs2447912	T	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	9015252	rs30761	A	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.20;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	9015258	rs9940652	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	9017061	rs139138924	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	3320.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=100.63;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	9030444	rs1382390	C	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	9186735	rs4630540	C	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=23.34;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	9210373	rs8045589	A	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	9916204	rs9806806	C	G	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	9916303	rs140421891	A	AAG	1762.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.56;ReadPosRankSum=0.614;SOR=0.562;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr16	9934687	rs369643465	AAAAG	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.466;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr16	9943666	rs2229193	C	T	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	10031780	rs145680603	T	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	10524957	rs34430103	G	T	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr16	10525230	rs34404959	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	10527613	rs7205853	C	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	10532211	rs1532824	A	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	10566146	rs4453490	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	10567751	.	C	CTTTTTT	328	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=15;HapScore=2;MGOF=44;MMLQ=22;MQ=56.92;NF=2;NR=2;PP=328;QD=82.75;SC=TGAGGCAAAGCTTTTTTTTTT;SbPval=0.52;Source=Platypus;TC=5;TCF=3;TCR=2;TR=4;WE=10567759;WS=10567741;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr16	10567984	rs62027485	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	10721431	rs74007171	G	A	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	10770075	rs2719711	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	10861716	rs2233540	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	10861914	rs2233541	T	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	10862879	rs2233542	C	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	10862964	rs11716	A	G	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	10864350	rs9925173	T	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	10912139	rs13338873	C	T	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	10989374	rs11074937	C	T	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	10995933	rs8046121	A	G	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr16	10996449	rs8045125	G	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	10998793	rs151070223	TATTCATTC	T	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	11010150	rs6498130	G	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	11015906	rs6498134	A	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	11063011	rs2302558	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	11133523	rs7201658	T	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	11136048	rs2302557	C	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	11137978	rs8052325	A	G	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	11154770	rs2286973	G	A	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	11214668	rs3217121	AAC	A	623.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.35;ReadPosRankSum=-1.641;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr16	11250413	rs7189563	C	A	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	11272391	rs114461101	G	A	21180.77	.	AC=2;AF=1.00;AN=2;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,819:1.00:819
chr16	11349403	rs27829	A	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	11350059	rs27831	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	11444454	rs57767216	GA	G	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,57:0.93:61
chr16	11537345	.	A	AG	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=62.99;MQRankSum=-0.710;QD=3.21;ReadPosRankSum=2.736;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr16	11537347	rs79803820	A	G,AAGAG	1592.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.19;QD=48.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,22,11:0.67,0.33:33
chr16	11542894	rs4467099	C	T	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr16	11550629	rs8048440	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr16	11554737	rs8046254	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	11555016	rs6498202	C	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	11556121	rs4254342	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	11797365	rs147693005	TACAC	T	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.030;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr16	11820789	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-2.287;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr16	11846508	rs2303822	T	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	11850003	rs7198247	A	G	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	11852354	rs8743	A	C	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	11857532	rs13338039	G	A	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	11857566	.	AATATATATATATATATATATATATAT	A	90	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.50;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr16	11859341	rs7199993	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	11875077	.	C	T	257.78	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	11940390	rs8052900	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	11969724	rs33657	G	C	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=25.59;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	11980878	.	G	GTT	204.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.471;QD=10.78;ReadPosRankSum=-1.555;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr16	11991944	rs33635	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	12008941	rs33619	T	G	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr16	12009279	rs424518	A	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.66;SOR=2.896;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	12009530	.	CCCG	C	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.758;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr16	12009614	rs435108	G	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	12009781	rs434762	G	A	17086.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr16	12021352	rs112574008	C	T	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr16	12021521	.	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-5.918;QD=2.16;ReadPosRankSum=-2.449;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr16	12031390	rs677507	C	T	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	12031448	rs636664	T	C	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	12060163	rs373496	A	G	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	12136954	rs1703492	A	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr16	12142130	rs56363861	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	12142172	rs3826097	T	G	3878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.592;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=-0.310;QD=43.10;ReadPosRankSum=0.739;SOR=0.338;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr16	12142175	rs3826098	C	G	3878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.589;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.591;MLEAC=2;MLEAF=1.000;MQ=59.45;MQRankSum=-0.305;QD=41.71;ReadPosRankSum=0.609;SOR=0.339;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr16	12162969	rs1641843	A	G	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	12181510	rs11648468	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	12181702	rs11648228	G	T	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	12183500	rs12596549	C	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr16	12229233	rs73519806	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	12297562	rs1701113	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	12371875	rs16959111	C	T	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	12371915	rs12448443	T	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	12536703	rs11075077	A	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	12618465	rs11075087	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	12621176	rs2269446	C	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	12759027	rs1713479	A	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	12814296	rs77658674	C	T	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	12897578	rs3748976	G	T	7877.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	13002359	rs9938751	T	C	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	13297219	.	G	C	767.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr16	13297242	rs13331224	C	T	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	14026007	rs254942	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	14031520	rs31869	G	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	14038659	rs2020955	T	C	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	14280971	rs76370902	A	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	14280993	rs77936200	G	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	14306119	rs226778	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	14328172	rs13329901	G	A	5323.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	14334478	rs200754172	TCA	T	6001.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	14345901	rs30144	T	C	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	14700253	rs199500479	G	GA	48.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-0.417;QD=1.11;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr16	14700254	rs4782156	G	A	1401.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=31.86;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	14738525	rs376559546	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.530;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr16	14951630	rs199610264	CT	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=0.262;QD=7.46;ReadPosRankSum=-1.421;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr16	14969016	rs79100490	T	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=8.579;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-5.271;QD=3.53;ReadPosRankSum=2.599;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:141,52:0.27:193
chr16	15069202	rs71232880	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-4.072;QD=6.43;ReadPosRankSum=1.712;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	15082526	rs113531425	C	T	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	15091589	rs11421981	C	CT	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-5.026;QD=12.51;ReadPosRankSum=-0.184;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:16,52:0.76:68
chr16	15092116	rs6498535	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	15135071	rs7498279	G	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	15178499	rs76732059	G	A	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-13.150;QD=4.90;ReadPosRankSum=1.200;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:210,101:0.32:311
chr16	15178612	rs373009083	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-12.118;QD=1.14;ReadPosRankSum=-3.108;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:152,31:0.17:183
chr16	15501658	.	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=2.313;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr16	15596142	rs12448500	G	C	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	15626960	rs12919246	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	15693011	.	TAAAAAAAA	T	642.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	15695059	rs2071331	A	G	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr16	15696480	.	A	AAGGAAAGGAGGAGGGAGGCAGAG	906.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=60.45;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	15696504	rs28370438	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=37.14;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	15704981	rs78405494	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	15705605	rs7185421	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	15710815	rs114191892	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	15727459	rs5815838	AT	A	637.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.430;QD=14.49;ReadPosRankSum=-0.389;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:5,39:0.89:44
chr16	15729455	rs34376746	C	CAA	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.89;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	15758744	.	CTT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.823;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr16	15771601	rs6498567	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	15781054	rs8044738	A	G	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	15784956	rs114622559	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	15788226	rs114119135	A	C	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	15813945	rs2075512	C	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	15838940	rs2384934	G	C	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	15843899	rs6498570	G	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	15850204	rs2272554	A	G	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr16	15853596	rs2280764	C	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	15869801	rs2072619	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	15872609	rs2075514	A	G	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	15872748	rs11644832	G	T	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	15872807	rs11645883	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	15876471	rs2075513	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:3,91:0.97:94
chr16	15892466	.	A	T	330.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=11.809;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.63;ReadPosRankSum=1.923;SOR=2.607;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr16	15892480	rs139462998	AC	A	547.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.551;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.07;ReadPosRankSum=0.281;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr16	15917321	rs2272552	T	C	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,174:0.99:176
chr16	15973654	rs8045082	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	15982258	rs3213476	A	G	7173.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:373,362:0.49:735
chr16	16130514	rs903880	C	A	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	16130524	rs246232	C	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	16138322	rs246221	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	16139714	rs35587	T	C	11778.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	16139720	rs8187853	G	A	11703.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	16139878	rs35588	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	16149871	rs35595	G	A	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	16161976	rs35604	G	A	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	16162019	rs35605	T	C	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	16165358	rs45486698	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	16184232	rs2074087	C	G	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	16200756	rs11075296	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	16205141	rs4780592	A	G	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=45.21;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	16205141	.	ACA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=48;MMLQ=24;MQ=59.95;NF=66;NR=37;PP=2947;QD=20;SC=GCTGGGTGGCACAGTGCTGGT;SbPval=0.54;Source=Platypus;TC=105;TCF=67;TCR=38;TR=103;WE=16205151;WS=16205131;set=Platypus	GT:AD:AF:DP	1/1:2,103:0.98:105
chr16	16205143	rs4780593	A	G	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=46.10;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	16205161	rs4238623	G	A	9605.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	16205167	rs111263400	G	GTGGGGC	10084.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	16205449	rs3851716	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	16219596	rs113369901	G	GAAAAAAA,GAAAAAAAA	3873.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.68;QD=37.61;SOR=1.409;set=HC	GT:AD:AF:DP	1/2:0,29,74:0.28,0.72:103
chr16	16251435	rs3896244	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr16	16251531	rs58694313	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	16253283	rs56822940	GC	G	6627.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:3,230:0.99:233
chr16	16255195	rs3851721	T	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	16263837	rs7201980	T	C	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	16267079	rs11866320	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	16271357	rs6416668	T	C	10515.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr16	16272670	rs7500834	T	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr16	16278055	rs5815863	CAA	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=10.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.911;SOR=3.745;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	16278981	rs8060117	C	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	16280921	rs8056103	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	16284272	rs7193932	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	16286614	rs6498618	G	C	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr16	16306169	.	A	AT	849.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.59;MQRankSum=-0.885;QD=14.91;ReadPosRankSum=-3.110;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:7,50:0.88:57
chr16	16459764	.	C	A	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.03;MQRankSum=0.967;QD=10.26;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr16	17190040	rs3889206	G	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	17221423	rs4782034	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	17221755	rs3812961	T	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	17228368	rs12708815	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	17252858	rs16968522	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	17292074	rs28709752	G	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	17294295	rs11075341	C	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	17353090	rs113276942	G	C	7822.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	17432570	rs74013021	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	18549711	.	C	CA,CAA	618.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.869;MLEAC=1,1;MLEAF=0.500,0.500;MQ=43.22;MQRankSum=1.359;QD=15.47;ReadPosRankSum=0.281;SOR=2.566;set=HC	GT:AD:AF:DP	1/2:5,11,24:0.28,0.60:40
chr16	18597295	rs377160485	C	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	18799664	rs185485407	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	18823379	rs2606556	T	C	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	18895641	rs182893149	T	C	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=57.99;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	19041491	rs4381586	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	19046960	rs12933286	T	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr16	19056069	rs55792501	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.30;QD=21.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	19079037	rs17357834	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=2.602;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	19079095	rs4531717	T	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	19079995	.	AAAAAG	A	146.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=20.93;ReadPosRankSum=1.068;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr16	19080227	rs75015998	C	CTG	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	19083221	rs4782202	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	19089562	rs8051232	C	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	19126492	rs8051801	T	A	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr16	19180079	rs142399831	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	19183957	rs113855661	C	CT	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-2.523;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr16	19222713	rs229018	T	G	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	19236181	rs2072076	C	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	19236202	rs76985031	C	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19278429	rs56287900	T	TAA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.30;ReadPosRankSum=2.200;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	19309812	rs1548448	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	19333111	rs8049175	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	19333153	rs8047832	A	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	19333202	rs79117596	C	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr16	19333224	rs8048432	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr16	19333241	rs6497343	G	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	19455468	rs72785308	G	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	19455615	rs4782247	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	19460842	rs6497373	A	G	7051.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	19471700	rs9921076	C	A	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	19492898	rs7185836	A	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	19498761	rs11866114	C	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	19503770	rs1967950	T	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	19509333	rs2245086	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	19518945	rs11860778	G	A	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	19522101	rs2074171	T	C	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr16	19522394	rs12923369	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	19547357	rs10492785	A	G	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	19547503	rs3751821	C	T	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	19547747	rs226891	C	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	19559998	rs9921419	A	T	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	19576382	rs35102175	AT	A	176.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-2.063;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr16	19580699	rs121235	A	G	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	19580711	rs8062210	G	C	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	19584332	rs371889	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	19590334	rs11861774	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	19590444	rs11866050	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	19592990	rs5816059	T	TC	3255.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:3,131:0.98:134
chr16	19598717	rs226856	T	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	19612829	rs16972232	A	T	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	19612877	rs3216771	T	TA	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19619355	rs6497388	G	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	19619602	rs11291600	CT	C	1196.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.663;QD=12.87;ReadPosRankSum=-0.658;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:12,81:0.87:93
chr16	19620356	rs114368743	G	A	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	19638856	rs7186999	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	19640099	rs138081043	TTTTA	T	1874.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	19644524	rs8056927	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	19659047	rs58758722	GC	G	5171.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr16	19663126	rs7206712	T	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	19663269	rs875648	T	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	19680546	rs957676	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	19716505	rs739565	A	G	7513.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	19726499	rs114853135	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	19741841	rs114376582	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	19800133	rs6497404	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	19868687	rs2729	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	20043330	rs2147865	T	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	20322425	rs11647569	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	20322439	rs11642182	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	20327491	rs75747999	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	20327498	rs112083622	GT	G	985.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	20331737	rs73541251	C	G	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	20334679	rs4411505	C	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	20334807	rs4420538	AC	TA	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.38;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	20334816	rs4544248	C	G	8981.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.69;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	20334932	rs4393582	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	20337884	rs4632135	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	20339131	rs4643330	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	20355646	rs116287468	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	20359723	rs80142672	C	T	9012.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	20360359	rs77875418	G	A	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr16	20370810	rs9652588	C	T	13381.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	20370816	rs9652589	C	T	13421.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	20376734	rs8052918	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	20376755	rs8054266	T	C	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	20380985	rs148290115	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	20386115	rs4522429	T	C	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	20422709	rs9927595	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	20423000	rs9928053	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	20429351	.	C	CT	29	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=11;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=29;QD=10.75;SC=TAAATTGCTTCTTTTTTTTTC;SbPval=0.73;Source=Platypus;TC=14;TCF=4;TCR=10;TR=4;WE=20429359;WS=20429341;set=Platypus	GT:AD:AF:DP	0/1:10,4:0.29:14
chr16	20430678	rs7192210	G	A	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	20432511	rs60259312	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	20432605	rs59025904	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	20435262	rs12103211	T	G	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	20435314	rs73545426	C	T	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	20486702	rs144701679	A	G	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.18;MQRankSum=-5.188;QD=8.98;ReadPosRankSum=0.099;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:183,167:0.48:350
chr16	20488803	rs1634306	T	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;QD=25.06;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	20492000	rs146233716	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.68;QD=29.85;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	20498079	rs2072080	T	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	20551855	rs28750179	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	20552075	rs16970280	G	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	20554392	rs371734334	G	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.61;QD=32.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	20554582	rs142632912	T	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.18;QD=21.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	20557620	rs7499557	T	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	20563663	rs28621389	G	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	20563686	rs28493824	G	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	20565394	rs9926166	A	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=42.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	20565394	.	AGC	CGT	281	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=4;HapScore=2;MGOF=10;MMLQ=24;MQ=59.27;NF=7;NR=2;PP=281;QD=37.1630972069;SC=AGATCATGGGAGCCTGAGTCA;SbPval=0.79;Source=Platypus;TC=10;TCF=7;TCR=3;TR=9;WE=20565404;WS=20565384;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr16	20565396	rs6497500	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=42.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	20565585	rs6497501	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	20570466	rs28712600	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.18;QD=26.40;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	20570661	rs62035059	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.86;QD=25.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	20570775	rs9927854	G	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	20602287	rs28736286	A	G	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.19;QD=29.67;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	20603900	rs11640049	A	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	20604028	rs11640145	C	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.65;QD=25.28;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	20638576	rs1692729	A	T	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	20681229	rs61745764	T	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	20681288	rs61742591	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	20749639	rs142375586	A	G	137.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.287;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	20750498	rs34908456	AT	A	155.87	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr16	20753123	rs234271	T	C	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr16	20787243	rs2229242	G	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	20788589	rs113476421	C	A	276.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	20792188	rs5715	T	C	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr16	20811681	rs2301771	C	T	11341.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr16	20827647	rs5816137	AT	A	501.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.686;MLEAC=2;MLEAF=1.000;MQ=60.48;MQRankSum=0.521;QD=14.76;ReadPosRankSum=1.488;SOR=0.109;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr16	20855309	rs9929443	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	20935305	rs142810636	T	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	20955794	.	GC	G	2704.73	.	AC=2;AF=1.00;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	20956098	rs113676245	G	GAC	141.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.87;ReadPosRankSum=-0.236;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr16	20970611	rs143956219	G	A	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	20975303	rs3743697	A	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr16	20975522	rs3826156	A	G	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	20981162	rs12929546	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	20986506	rs3115438	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	20998832	rs114963676	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	20999464	rs4783517	C	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	20999478	rs145993882	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	21008690	rs3115446	T	C	7441.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	21030897	rs3095922	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	21033474	rs113953693	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	21035826	rs330135	G	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	21038591	rs79919964	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	21071404	rs858204	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	21071499	rs858205	G	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	21078693	rs861424	T	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	21082168	rs704554	C	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	21136477	rs7191215	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	21152073	rs7202719	CA	TG	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	21152481	rs8061542	G	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	21156829	rs6497538	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	21161526	rs7204599	A	G	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	21161552	rs11074486	T	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.83;QD=40.32;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	21161559	rs11074487	T	A	556.96	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=34.81;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	21161572	.	T	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=10.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.24;ReadPosRankSum=4.201;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr16	21190853	rs1063087	A	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	21209981	rs62033379	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	21210006	rs7189430	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	21211039	rs16971219	C	T	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	21217061	rs16971234	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	21222672	rs2075520	C	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	21272591	rs14122	G	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	21272768	rs34784464	T	TA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.849;QD=5.62;ReadPosRankSum=0.065;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr16	21289023	rs2075628	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	21396859	rs368310563	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=-4.656;QD=1.63;ReadPosRankSum=-0.447;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr16	21397273	rs369341030	CTG	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-1.559;QD=9.41;ReadPosRankSum=-0.475;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	21531135	rs190136898	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,69:0.50:138
chr16	21531494	rs42138	T	C	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	21531609	rs42139	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:69,96:0.58:165
chr16	21531645	rs150387611	CG	C	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr16	21531681	rs42140	C	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr16	21608472	rs194548	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	21652720	rs1055740	A	G	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	21689728	rs113757042	C	CAT	57.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	21690559	rs12445216	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr16	21696041	.	CTTA	C	209.80	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	21698673	rs74358975	C	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	21732553	rs35961471	TAC	T	279.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=23.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	21742068	.	A	G	241	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=20;MMLQ=26;MQ=48.27;NF=14;NR=0;PP=241;QD=19.6979437534;SC=AAGACAATCTATTCCTGAAAG;SbPval=1.0;Source=Platypus;TC=49;TCF=41;TCR=8;TR=14;WE=21742076;WS=21742058;set=Platypus	GT:AD:AF:DP	0/1:35,14:0.29:49
chr16	21763602	.	ATG	A	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-5.452;QD=3.01;ReadPosRankSum=-2.828;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr16	21771645	.	A	G	90	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=27;MQ=50.1;NF=6;NR=0;PP=90;QD=20.7952020912;SC=CTCTTTGGGGATCATTGTTCC;SbPval=1.0;Source=Platypus;TC=14;TCF=14;TCR=0;TR=6;WE=21771653;WS=21771642;set=Platypus	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	21821976	rs148768203	C	CA	109.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.20;ReadPosRankSum=-0.566;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr16	21970546	rs2967178	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	21992122	rs2965803	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	22012146	rs112306057	A	AATG	659.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr16	22108284	rs10591498	AT	A	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.839;QD=5.29;ReadPosRankSum=-1.032;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	22126526	rs115544590	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	22128052	rs11649656	TT	GC	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	22144318	rs1105929	C	T	9926.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr16	22144578	rs1105928	A	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	22149612	rs112136401	C	CTG	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr16	22155629	rs9937453	A	G	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	22161136	rs1991020	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	22178256	rs6497575	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	22178492	rs8060335	T	G	130.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	22268526	rs11640501	A	C	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	22269867	rs4783453	A	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	22271671	rs35233038	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.198;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	22271707	rs9934052	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	22276365	rs11860812	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	22277965	rs1559316	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	22320371	rs7196114	C	T	14416.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr16	22334035	rs8055191	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr16	22334084	rs8055349	A	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr16	22448133	rs56330751	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.138;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr16	22579730	rs376957934	A	ATG	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=4.931;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=0.752;QD=11.71;ReadPosRankSum=1.779;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	23079353	rs8047644	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	23221183	rs5740	A	G	8205.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr16	23221238	rs4281710	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	23224573	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.238;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr16	23360199	rs238547	T	C	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr16	23388589	rs61759922	C	T	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr16	23400494	rs250586	C	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	23486197	rs11074559	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	23489711	rs1135045	C	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	23490353	rs4968008	T	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	23498305	rs35896041	G	GTTT	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	23506940	rs722069	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	23521643	rs1071685	G	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	23521750	rs2285522	T	C	511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=-0.555;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr16	23521780	rs2285521	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	23533008	rs11074565	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	23535680	rs1468138	A	C	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	23536366	rs6497670	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	23536684	rs6497671	T	C	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	23540798	rs2072062	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	23541223	rs2072061	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	23541273	rs59125292	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	23546561	rs2073951	G	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	23555726	rs2369009	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	23557718	rs7196534	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	23557790	rs4968019	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	23563501	rs7187920	C	T	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	23573687	.	G	GT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=1.924;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr16	23606895	rs240744	G	T	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	23625463	rs249936	A	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	23713699	rs149793439	A	G	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	23718262	rs16972843	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	23721601	rs4967959	T	G	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	23722042	rs3899652	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	23722114	rs144657255	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	23724753	rs3809682	G	A	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	23766617	rs113290753	G	A	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	23767124	rs75430694	G	A	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	23767633	rs77005706	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	23768380	rs5816221	T	TG	656.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	23768802	rs80950	T	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	23768908	rs16972893	C	T	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	23847575	rs75964872	C	A	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	24043676	rs1971276	C	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	24185815	rs72154122	CT	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.272;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr16	24357998	rs5816249	T	TG	1159.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.11;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	24564879	rs72133882	GTA	G	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	24578458	rs7195386	T	C	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	24676090	.	TCACA	T	632.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	24741686	rs7202252	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	24762214	rs138910571	CATTT	C	217.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	24788389	rs4788428	A	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	24807165	rs1030211	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	24820823	rs56154395	CA	C	206.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=12.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	24888646	rs11074656	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr16	24902194	rs274081	T	C	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	24918048	rs17772929	C	T	11551.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	24919245	rs113206122	C	CAGGGA	2796.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	24921854	rs201159355	A	ATT	1881.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.82;ReadPosRankSum=-1.239;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,76:0.96:79
chr16	25043277	rs11074669	G	A	11718.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr16	25137289	rs7189229	G	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	25137385	rs11861481	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr16	25137449	rs7188975	A	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr16	25151398	rs10681142	A	ACT	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=35.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	25163017	rs139504024	G	GGTGTGT,GGTGTGTGT	938.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;QD=42.67;SOR=3.912;set=HC	GT:AD:AF:DP	1/2:0,7,15:0.32,0.68:22
chr16	25172274	rs277899	G	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	25172307	.	A	ATT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.96;ReadPosRankSum=0.291;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr16	25180610	rs6497812	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	25189173	.	C	T	904.77	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	25239805	rs2287798	G	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	25239872	rs2287797	G	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	25255080	rs141745999	T	TAAAACTCCTTGGTTTTGCACC	3383.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=52.87;ReadPosRankSum=1.409;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr16	25255506	rs11642611	C	T	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	25258035	rs11649280	A	G	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	25258655	rs61742723	A	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	25263278	rs2112811	G	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	25264440	rs11643089	T	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	25266658	rs116148718	A	G	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	25268368	rs4787310	A	G	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr16	25704145	rs2943336	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	25944544	rs117559033	C	T	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	25944700	rs4303490	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	26147454	rs9930821	G	T	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr16	27215267	rs877585	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	27215380	rs908382	A	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	27222442	.	C	CT	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.586;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:60,28:0.32:88
chr16	27253059	rs28363677	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	27269023	rs7201652	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	27356741	rs3024563	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	27358040	rs3024572	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	27366296	rs3024632	T	C	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	27366562	rs3024634	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	27367334	rs4787423	C	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	27367405	.	CTTTTTTTTTTTTTTTTTT	C	1341.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.05;MQRankSum=0.464;QD=40.66;ReadPosRankSum=1.093;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr16	27372316	rs3024669	C	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	27373467	rs3024675	A	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	27373558	rs3024676	C	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	27373872	rs1805011	A	C	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	27373915	rs2234898	G	T	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr16	27373972	rs2234900	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	27374400	rs1801275	A	G	9568.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:3,374:0.99:377
chr16	27374927	rs1805016	T	G	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	27375157	rs2074570	T	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	27414378	rs6498021	T	G	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr16	27510117	rs11452553	C	CA	2695.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	27561584	rs4787969	G	A	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	27629661	rs4787980	G	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	27642249	rs233453	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr16	27666204	rs233470	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	27752314	rs5816442	T	TC	203.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	27763110	rs2289875	T	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	27772901	rs4787984	G	A	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	27777831	rs8043555	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	27784375	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.798;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr16	27788843	rs189973163	C	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	27818887	.	A	AAAAAAC	3735.73	.	AC=2;AF=1.00;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=43.95;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	27856156	rs772960	T	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	27861779	rs9923632	A	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	27974418	rs2051742	T	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	27974487	rs2051743	T	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	28109760	rs28574753	G	A	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	28113063	rs13338974	G	A	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	28119128	rs13329972	C	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	28157337	rs8063003	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	28157351	rs28379290	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	28177794	rs73525027	A	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	28181306	rs28479048	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	28181378	rs9927275	C	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	28222563	rs7499332	G	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	28222668	rs76406515	G	A	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	28332023	.	G	A	402.77	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	28506397	rs143822957	CCT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.941;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr16	28508716	rs40832	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	28603393	rs27742	T	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.73;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	28617485	rs1801030	C	T	6314.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	28617552	rs3176926	C	G	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:195,167:0.46:362
chr16	28618238	rs7499134	A	G	24718.77	.	AC=2;AF=1.00;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	1/1:0,953:1.00:953
chr16	28618708	rs11648192	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	28620800	rs3760091	C	G	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:239,195:0.45:434
chr16	28621213	rs115812810	G	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr16	28621311	rs2077412	T	C	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	28631314	rs141320733	T	TTGTGTG	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	28631360	rs28410083	A	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.28;QD=22.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	28837515	rs8049439	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	28838073	rs12448482	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	28842311	rs4344749	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	28844068	rs7498491	T	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	28847246	rs12928404	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	28857645	rs7187776	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	28883327	rs28433345	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	28885057	rs28698920	G	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	28898793	rs6565259	T	C	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:4,227:0.98:231
chr16	28906084	rs9931989	G	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	28909777	rs66716803	GC	G	4491.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	28913787	rs7189927	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	28915527	rs10499	G	A	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr16	28922149	rs11646653	C	T	9211.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr16	28925978	rs3924376	T	C	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:3,242:0.99:245
chr16	28944396	rs2904880	C	G	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	28993049	rs6565300	A	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	28993649	rs11301233	AC	A	9603.73	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr16	28995057	rs11859822	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	28995757	rs7140	C	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	28996725	rs77760721	G	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	28997070	rs112964111	G	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	28997270	rs41280846	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	29000808	rs73535863	C	T	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	29001460	rs9929088	A	C	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:2,424:1.00:426
chr16	29097556	rs61151630	C	CAT	1201.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.12;QD=42.92;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	29102189	rs56374327	C	CT	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.08;QD=23.61;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	29113497	rs11366120	AT	A	3593.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.741;MLEAC=2;MLEAF=1.000;MQ=47.03;MQRankSum=-3.164;QD=19.43;ReadPosRankSum=0.994;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:7,178:0.96:185
chr16	29141189	rs111588985	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	29142059	rs1642020	G	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	29142189	rs1642021	A	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	29142204	rs1642022	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	29332380	rs257878	T	C	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	29375985	.	C	CT	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.89;MQRankSum=-2.037;QD=10.83;ReadPosRankSum=-0.477;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,35:0.73:48
chr16	29376400	.	CTGTG	C,CTGTGTGTGTG	3337.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=142;set=Intersection	GT:AF:DP	1/2:0.35,0.59:111
chr16	29624247	rs28455095	C	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	29644794	rs11150561	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	29645078	rs12597368	C	A	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=27.36;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	29645104	rs35388990	CA	C	1379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-0.285;QD=10.78;ReadPosRankSum=-1.219;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:24,104:0.81:128
chr16	29647700	rs200123374	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.09;QD=29.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	29705854	rs9936468	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	29708350	rs9932770	A	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	29755576	rs112310246	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	29790669	rs235634	T	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	29790678	rs183527	T	G	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	29790767	rs235635	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	29791561	rs235637	T	G	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	29791721	rs235638	G	C	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	29791818	rs35586094	TA	T	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	29809634	rs5816499	TACAC	T	481.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;QD=40.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	29811319	rs235648	C	T	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr16	29814234	rs2450399	G	A	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	29817445	.	ACCTC	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-1.832;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr16	29817998	rs111993640	C	T	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	29821744	rs2516825	G	A	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	29821983	.	C	CT	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.124;QD=9.11;ReadPosRankSum=-1.261;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr16	29822841	rs11150572	A	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	29823202	rs12923293	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	29825126	rs11150573	T	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	29859430	rs11350750	CT	C	183.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.283;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr16	29906499	.	CAAA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.924;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	29908433	rs11649499	C	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	29923510	rs4548895	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	29989739	rs11860782	A	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	29997802	.	C	T	4272.77	.	AC=1;AF=0.500;AN=2;DP=389;set=Intersection	GT:AD:AF:DP	0/1:179,205:0.53:384
chr16	29998200	rs4077410	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	29999225	rs11864149	G	A	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	30012691	rs57312298	C	T	17824.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.169;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=0.495;SOR=0.039;set=HC	GT:AD:AF:DP	1/1:4,693:0.99:697
chr16	30012922	rs11866084	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	30016022	rs12928610	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	30022185	.	A	G	166.80	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	30037128	rs11544328	A	C	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr16	30080780	rs11860935	C	T	16018.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:1,600:1.00:601
chr16	30094180	rs11861842	C	T	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	30096468	rs34627357	T	TG	599.80	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr16	30119525	rs8061772	C	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	30198151	rs1132812	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	30199584	rs35900366	G	A	13224.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr16	30364376	.	C	T	5848.77	.	AC=2;AF=1.00;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	30386262	rs8046445	C	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	30387103	rs139556248	TG	T	12167.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	30390314	rs12447833	T	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	30391169	rs191063042	C	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	30393660	rs4787643	G	A	10977.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr16	30393771	rs4788409	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	30407269	rs13333093	C	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	30408765	rs12921440	C	T	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	30410445	rs4788413	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	30424888	rs11314620	GT	G	671.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=20.99;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	30490854	rs11862597	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	30492666	rs57608894	TA	T	322.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=35.88;ReadPosRankSum=-0.000;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr16	30492690	rs10871452	A	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr16	30505512	rs1978079	CA	TG	27916.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chr16	30518041	rs2230433	G	C	10519.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr16	30528272	rs7196298	C	A	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	30532727	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=2.118;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr16	30536672	rs3751847	A	G	8639.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	30536918	rs10871453	C	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	30538259	rs3794703	T	C	232.53	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr16	30664136	rs144165240	G	A	17558.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.088;QD=25.56;ReadPosRankSum=-0.539;SOR=0.433;set=HC	GT:AD:AF:DP	1/1:3,684:1.00:687
chr16	30665449	rs370614424	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.014;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr16	30666367	rs3747481	C	T	12384.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	30671532	rs35629860	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	30672719	rs885107	T	C	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	30724070	rs4889500	G	T	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	30724221	rs4889501	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	30732406	rs1470129	C	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	30734963	rs4889502	C	A	10281.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr16	30760320	.	GGGTGGT	G	2430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.759;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=11.124;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.371;QD=27.01;ReadPosRankSum=3.524;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:12,78:0.87:90
chr16	30762640	rs4889504	C	T	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	30766247	rs9941201	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	30768492	rs71820772	GCTCTGGC	G	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	30770267	rs7188077	C	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	30772004	rs35446957	GAA	G	3449.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	30772040	rs4889505	A	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	30773822	rs1550477	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	30779716	rs7195142	A	G	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	30780828	rs4889506	A	G	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	30832463	rs6565205	A	C	4988.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.534;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-0.719;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:1,195:0.99:196
chr16	30832475	rs6565206	T	C	5124.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=-0.614;SOR=1.461;set=HC	GT:AD:AF:DP	1/1:1,200:1.00:201
chr16	30832701	rs8045550	A	C	7945.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	30833272	rs8046609	A	G	17629.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr16	30833321	rs8046001	C	T	15540.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:2,608:1.00:610
chr16	30833425	rs4889510	G	C	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	30910673	rs187644743	G	A	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	30939303	rs140893916	TCA	T	7020.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	30960895	rs202180769	CG	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=9.658;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.857;QD=2.78;ReadPosRankSum=2.886;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr16	30964940	rs9926903	A	G	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	30965549	rs35717321	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.326;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr16	30999434	rs34212827	T	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	31004812	rs12445568	T	C	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr16	31004926	rs7194921	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	31008243	rs73528516	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	31009025	rs7203711	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	31012781	rs12920772	G	A	4274.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;MQRankSum=-0.055;QD=25.45;ReadPosRankSum=-0.685;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,167:0.99:168
chr16	31044683	rs58726213	A	G	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	31044897	rs12445650	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	31049155	rs55979739	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	31050023	rs732173	C	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	31050033	rs732172	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	31075708	rs2032917	C	G	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr16	31091209	rs3751855	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	31092075	rs7196726	G	A	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	31095171	rs11865038	C	T	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:3,142:0.98:145
chr16	31095204	rs11864806	G	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr16	31095251	rs11864839	G	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr16	31095558	rs56909237	C	T	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	31096164	rs7199949	G	C	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	31097574	rs4889535	G	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	31102589	rs7200749	G	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	31122229	rs1549296	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	31122571	rs889555	C	T	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	31131614	rs4527034	A	G	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr16	31141826	rs1549295	A	G	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	31141880	rs1549294	A	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	31142381	rs2855479	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	31146739	rs8049043	C	G	16405.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=-1.434;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:2,639:1.00:641
chr16	31151521	rs8047469	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	31152717	rs889547	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	31153780	rs889546	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr16	31157312	rs72280366	AGGTATGGCAT	A	4824.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	31191482	rs929867	A	G	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr16	31195759	.	C	CT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.111;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr16	31196224	.	G	GT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.236;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr16	31196766	rs140000657	T	TA	827.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	31230463	rs7186832	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	31271545	rs11865830	G	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	31284529	rs13334383	A	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	31284618	rs201225943	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-2.220;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr16	31287903	rs28439473	T	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	31288121	rs9939679	A	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	31335906	rs41476751	T	C	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	31336888	rs1143683	C	T	9758.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	31342608	rs7188189	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	31343005	rs1143678	C	T	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	31368835	rs11574636	C	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	31371193	rs4264407	C	G	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	31380596	rs12930249	C	T	213.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=21.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	31384422	rs148124533	AAAG	A	692.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=38.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	31384554	rs2070896	T	C	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	31391745	rs58436070	G	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	31391887	rs59889488	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr16	31393119	rs112723689	C	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	31393313	rs113297646	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	31404467	rs8050328	T	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	31404488	rs8043967	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	31404571	rs8050500	T	C	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	31413400	rs192657965	G	A	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	31422429	rs12444660	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	31427678	rs8056122	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	31429692	rs141738009	G	T	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr16	31434786	rs77430224	C	G	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr16	31437333	rs13334461	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	31439513	rs115502256	C	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr16	31439562	rs115157197	T	C	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr16	31470540	rs3813002	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	31471378	rs9926717	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	31473376	rs9921490	G	T	8064.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	31475606	rs8058448	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.63;SOR=6.043;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	31475613	.	TAAAAAAAA	T	1832.73	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;QD=35.94;SOR=6.736;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr16	31503751	rs4536493	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	31519048	rs11861164	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	31539386	rs8050390	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	31575186	rs7192364	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	31580272	rs4889673	C	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr16	31580530	rs4889548	A	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	31613277	rs11865800	C	T	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr16	31614439	rs4550471	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	31724836	rs2884713	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	31734197	rs34186495	G	GA	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	31770696	rs34487972	G	GA	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	31770723	rs12921028	T	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	31926619	rs3850114	G	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	31987859	rs370699866	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.845;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=15.741;MLEAC=1;MLEAF=0.500;MQ=42.04;MQRankSum=1.529;QD=10.33;ReadPosRankSum=-1.280;SOR=4.024;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr16	31987931	rs489120	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=9.792;MLEAC=1;MLEAF=0.500;MQ=39.51;MQRankSum=0.396;QD=5.52;ReadPosRankSum=-0.250;SOR=3.246;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr16	32486756	rs28495417	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr16	32487933	rs28612238	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	32889182	.	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.99;MQRankSum=-0.727;QD=12.14;ReadPosRankSum=1.219;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	32890081	.	C	T	38.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.57;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	32891078	.	G	A	2475.77	.	AC=1;AF=0.500;AN=2;DP=398;set=Intersection	GT:AD:AF:DP	0/1:249,148:0.37:397
chr16	32891522	rs138173595	G	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.79;MQRankSum=-2.377;QD=6.43;ReadPosRankSum=1.127;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	32891573	rs147501614	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-2.450;QD=5.85;ReadPosRankSum=-0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr16	32893876	rs375167306	T	C	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.500;MQ=50.61;MQRankSum=-3.640;QD=4.50;ReadPosRankSum=0.683;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:120,51:0.30:171
chr16	32896488	rs372917285	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.28;MQRankSum=0.822;QD=11.76;ReadPosRankSum=-1.162;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	32896606	rs139370574	GC	AT	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	32896672	.	G	C	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=47.01;MQRankSum=-0.542;QD=14.04;ReadPosRankSum=-1.403;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr16	32896688	.	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-0.580;QD=13.47;ReadPosRankSum=-0.480;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr16	32936832	.	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.35;QD=44.90;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	32936837	.	G	T	1649.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.51;QD=41.24;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	32945402	rs57620987	A	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.707;QD=8.23;ReadPosRankSum=-0.920;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr16	32945457	rs28593326	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr16	32945481	rs28463965	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	32957041	rs62046846	C	T	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.063;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-8.815;QD=15.11;ReadPosRankSum=0.706;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:83,59:0.42:142
chr16	32957043	rs62046847	T	C	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.133;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-8.771;QD=15.66;ReadPosRankSum=1.302;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:81,56:0.41:137
chr16	33372666	rs4985326	C	T	2431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-11.444;QD=11.92;ReadPosRankSum=-1.962;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:136,68:0.33:204
chr16	33372673	rs4985325	T	C	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-11.609;QD=11.44;ReadPosRankSum=-1.155;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:152,72:0.32:224
chr16	33372677	rs4985324	C	T	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-12.115;QD=11.01;ReadPosRankSum=-1.201;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:160,76:0.32:236
chr16	33372694	rs4985323	T	C	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:212,101:0.32:313
chr16	33380000	rs4536488	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:285,88:0.24:373
chr16	33380074	rs28591591	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:271,102:0.27:373
chr16	33380234	rs57545706	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr16	33380263	rs57312786	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:30,6:0.17:36
chr16	33390329	rs12232434	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr16	33390399	rs4086208	C	T	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-9.358;QD=6.06;ReadPosRankSum=-0.784;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:157,88:0.36:245
chr16	33391213	rs4082382	C	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-2.655;QD=10.64;ReadPosRankSum=-0.613;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr16	33391222	rs4082381	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-2.867;QD=10.70;ReadPosRankSum=-0.783;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:59,29:0.33:88
chr16	33391256	rs7193840	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:82,40:0.33:122
chr16	33391348	rs7188099	G	A	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.091;MLEAC=1;MLEAF=0.500;MQ=54.01;MQRankSum=-2.656;QD=5.85;ReadPosRankSum=-0.582;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:105,54:0.34:159
chr16	33391395	rs7188064	G	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-2.745;QD=5.55;ReadPosRankSum=0.811;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:142,72:0.34:214
chr16	33391415	rs357994	A	C	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:102,128:0.56:230
chr16	33392008	rs56739713	A	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=2.032;QD=3.57;ReadPosRankSum=-2.011;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:192,66:0.26:258
chr16	33392165	rs11150710	C	G	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=0.300;QD=5.10;ReadPosRankSum=-0.251;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:258,122:0.32:380
chr16	33392215	rs11150709	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr16	33392231	rs11150708	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:66,36:0.35:102
chr16	33395795	rs373875949	TA	T	533.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.111;QD=17.22;ReadPosRankSum=-0.261;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	33395797	.	A	AAATAATAATAAT	189.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.645;QD=6.54;ReadPosRankSum=0.869;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr16	33395802	rs368088965	AT	A	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.156;QD=15.37;ReadPosRankSum=-0.033;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr16	33395820	rs113700056	A	ACAG	843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.064;QD=16.54;ReadPosRankSum=0.351;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr16	33395882	rs4887691	A	G	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-10.334;QD=5.77;ReadPosRankSum=0.375;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:164,85:0.34:249
chr16	33395983	rs28650990	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:160,56:0.26:216
chr16	33408626	rs8059234	T	C	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-9.506;QD=3.75;ReadPosRankSum=0.786;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:334,120:0.26:454
chr16	33408654	rs60406485	C	A	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:330,103:0.24:433
chr16	33408673	rs28415216	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:332,90:0.21:422
chr16	33408733	rs8058447	GC	AT	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=4.167;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-6.426;QD=5.18;ReadPosRankSum=-1.308;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:177,41:0.19:218
chr16	33408793	rs58465568	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-0.645;QD=1.83;ReadPosRankSum=-0.361;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr16	33410561	rs2632816	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr16	33410688	rs56055507	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.383;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-4.329;QD=1.97;ReadPosRankSum=-2.868;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:329,74:0.18:403
chr16	33410777	rs74905055	G	T	3698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-21.146;QD=5.58;ReadPosRankSum=6.818;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:434,229:0.35:663
chr16	33424634	rs60026982	T	C	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.046;QD=31.27;ReadPosRankSum=0.909;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:18,49:0.73:67
chr16	33424637	rs62033013	AA	GG	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.061;QD=29.68;ReadPosRankSum=0.903;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:20,53:0.73:73
chr16	33424691	rs2632824	T	C	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:79,141:0.64:220
chr16	33424787	rs2632823	C	T	7221.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:211,347:0.62:558
chr16	33424917	rs1906318	A	C	7266.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:203,343:0.63:546
chr16	33424950	rs2927971	C	T	6298.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:178,287:0.62:465
chr16	33500743	rs3888934	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr16	33500893	rs4079166	C	T	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.700;QD=4.39;ReadPosRankSum=0.961;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:420,87:0.17:507
chr16	33500900	rs4079165	C	T	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-9.673;QD=4.32;ReadPosRankSum=2.903;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:421,83:0.16:504
chr16	33500908	rs3888935	C	A	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.827;QD=4.60;ReadPosRankSum=3.528;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:406,84:0.17:490
chr16	33500915	rs4079164	T	A	2340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-10.238;QD=5.00;ReadPosRankSum=3.206;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:382,86:0.18:468
chr16	33500973	rs58427145	CAG	C	2208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.609;QD=8.24;ReadPosRankSum=-1.544;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:193,75:0.28:268
chr16	33530740	rs200449516	TA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=0.868;QD=5.18;ReadPosRankSum=-0.885;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr16	33534128	.	G	C	390	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=24;MQ=48.88;NF=24;NR=16;PP=390;QD=10.6192803137;SC=GAACAGGACTGGACTCTGATT;SbPval=0.37;Source=Platypus;TC=98;TCF=63;TCR=35;TR=40;WE=33534136;WS=33534118;set=Platypus	GT:AD:AF:DP	1/0:58,40:0.41:98
chr16	33534161	.	T	C	540	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=1;MGOF=31;MMLQ=27;MQ=49.55;NF=24;NR=20;PP=540;QD=13.0629821033;SC=CTTTTAACCATATCTTCATTT;SbPval=0.36;Source=Platypus;TC=127;TCF=76;TCR=51;TR=44;WE=33534169;WS=33534151;set=Platypus	GT:AD:AF:DP	1/0:83,44:0.35:127
chr16	33534194	rs112954068	C	CA	1003.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:209,37:0.15:246
chr16	33534198	rs146867572	C	A	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.961;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-14.579;QD=4.38;ReadPosRankSum=-4.408;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:209,42:0.17:251
chr16	33534205	rs75274563	T	C	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.470;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-14.909;QD=5.86;ReadPosRankSum=-5.316;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:210,53:0.20:263
chr16	33534209	rs111304289	T	A	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-15.277;QD=6.08;ReadPosRankSum=-4.324;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:218,56:0.20:274
chr16	33534212	rs74015084	C	T	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-15.422;QD=6.14;ReadPosRankSum=-4.027;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:219,59:0.21:278
chr16	33534278	rs10445205	A	G	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:66,121:0.65:187
chr16	33534325	rs375310866	CT	C	926.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr16	33534330	rs28594967	G	A	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr16	33534344	rs78083012	G	T	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-8.547;QD=14.65;ReadPosRankSum=-0.059;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:49,31:0.39:80
chr16	33534346	.	G	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-8.157;QD=11.22;ReadPosRankSum=-0.615;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	33534352	rs78884180	G	C	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-8.494;QD=13.82;ReadPosRankSum=-0.380;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr16	33534354	rs74594913	C	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-8.494;QD=13.78;ReadPosRankSum=-0.625;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr16	33534369	rs74800708	C	CAA	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr16	33539512	rs78972024	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=-4.487;QD=7.48;ReadPosRankSum=2.510;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr16	33539535	rs55950724	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=-2.308;QD=2.78;ReadPosRankSum=0.725;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr16	33539541	rs80334711	A	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=7.491;MLEAC=1;MLEAF=0.500;MQ=49.59;MQRankSum=-3.173;QD=2.34;ReadPosRankSum=3.170;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr16	33539648	rs56161129	C	A	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.555;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=8.564;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-6.739;QD=6.94;ReadPosRankSum=0.722;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:151,88:0.37:239
chr16	33539747	rs56272308	G	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr16	33629620	rs2005870	C	T	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr16	33629637	rs2005869	T	G	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:121,70:0.37:191
chr16	33629700	rs2019670	G	A	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:230,167:0.42:397
chr16	33629846	rs28494899	T	A	5414.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:339,277:0.45:616
chr16	33629950	rs4077614	G	T	4675.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:430,253:0.37:683
chr16	33629973	rs2002923	G	A	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:430,236:0.35:666
chr16	33630022	rs2075113	A	T	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:360,264:0.42:624
chr16	33630336	rs492688	A	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr16	33630533	rs2110374	A	C	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:152,168:0.53:320
chr16	33730608	.	G	A	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=48.31;MQRankSum=-1.274;QD=12.55;ReadPosRankSum=3.030;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:33,49:0.60:82
chr16	33730779	.	C	A	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=49.64;MQRankSum=-4.938;QD=16.44;ReadPosRankSum=0.376;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:70,60:0.46:130
chr16	33730784	.	T	C	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=49.81;MQRankSum=-4.935;QD=18.24;ReadPosRankSum=0.526;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:59,52:0.47:111
chr16	33784423	rs190376515	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=4.113;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-9.662;QD=0.22;ReadPosRankSum=-3.225;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:256,38:0.13:294
chr16	33784613	.	G	GC	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.82;MQRankSum=-3.207;QD=5.77;ReadPosRankSum=2.145;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr16	33961006	rs149658230	G	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.866;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=0.756;QD=4.29;ReadPosRankSum=1.263;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr16	33961008	rs375442662	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-2.377;QD=7.62;ReadPosRankSum=-0.841;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	33961010	rs143832052	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=12.460;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-1.559;QD=15.95;ReadPosRankSum=0.110;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr16	33961019	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.697;QD=5.63;ReadPosRankSum=-0.058;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr16	33961021	.	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.697;QD=5.53;ReadPosRankSum=-0.057;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr16	33961030	rs77469183	T	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.602;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr16	33961317	rs75989665	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=17.133;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-2.152;QD=5.14;ReadPosRankSum=0.473;SOR=1.813;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr16	33961327	rs79375500	G	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=15.385;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-3.606;QD=6.69;ReadPosRankSum=-0.118;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr16	33961363	.	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=6.169;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=0.453;QD=3.79;ReadPosRankSum=-0.679;SOR=1.674;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr16	33961370	rs72797450	A	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr16	33961386	rs76705741	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr16	33961390	.	GACCCGCTCCGCTGCGAGCCGGCTCTCC	G	595.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.761;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=7.992;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-6.429;QD=5.01;ReadPosRankSum=1.967;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr16	33961400	rs113037697	G	T	517.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-0.926;QD=5.39;ReadPosRankSum=0.534;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr16	33961418	rs113700972	A	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-1.698;QD=4.33;ReadPosRankSum=0.328;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:94,20:0.18:114
chr16	33961453	rs74808338	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:114,38:0.25:152
chr16	33961465	rs74932417	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-8.343;QD=0.39;ReadPosRankSum=-0.280;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:136,14:0.09:150
chr16	33961467	rs74834425	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-3.748;QD=0.67;ReadPosRankSum=-0.205;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:141,12:0.08:153
chr16	33961471	rs137972467	C	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.429;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.985;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-5.750;QD=1.05;ReadPosRankSum=-1.639;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:143,14:0.09:157
chr16	33961474	rs78784184	G	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-5.726;QD=0.83;ReadPosRankSum=-2.063;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:142,14:0.09:156
chr16	33961481	rs366164	A	C	590.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.810;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-10.219;QD=3.62;ReadPosRankSum=-2.150;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:139,24:0.15:163
chr16	33961482	rs78161808	T	C	635.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.218;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=7.692;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-10.553;QD=3.85;ReadPosRankSum=-1.754;SOR=1.564;set=HC	GT:AD:AF:DP	0/1:142,23:0.14:165
chr16	33961483	rs77018326	G	T	229.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.390;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=13.946;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-9.762;QD=1.38;ReadPosRankSum=-3.219;SOR=2.338;set=HC	GT:AD:AF:DP	0/1:148,18:0.11:166
chr16	33961499	rs75192280	CA	TG	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;JOINED;set=Intersection	GT:AD:AF:DP	0/1:158,29:0.16:187
chr16	33961506	.	A	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=7.912;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-12.203;QD=1.75;ReadPosRankSum=-1.873;SOR=1.594;set=HC	GT:AD:AF:DP	0/1:169,22:0.12:191
chr16	33961539	rs72797452	A	C	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.032;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=29.745;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-15.876;QD=4.52;ReadPosRankSum=-2.006;SOR=2.410;set=HC	GT:AD:AF:DP	0/1:246,48:0.16:294
chr16	33961541	rs79025441	T	G	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.147;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=31.758;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-15.403;QD=4.91;ReadPosRankSum=-2.223;SOR=2.490;set=HC	GT:AD:AF:DP	0/1:249,50:0.17:299
chr16	33961544	rs79909802	C	T	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=35.714;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-15.483;QD=5.59;ReadPosRankSum=-2.334;SOR=2.641;set=HC	GT:AD:AF:DP	0/1:250,54:0.18:304
chr16	33961552	rs76049930	G	A	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.354;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=33.431;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-15.562;QD=7.08;ReadPosRankSum=-3.612;SOR=2.167;set=HC	GT:AD:AF:DP	0/1:292,75:0.20:367
chr16	33961555	rs77111738	C	A	4138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.407;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=45.420;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-14.758;QD=10.59;ReadPosRankSum=-4.176;SOR=2.389;set=HC	GT:AD:AF:DP	0/1:303,88:0.23:391
chr16	33961556	rs75931509	A	G	4339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.249;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=40.576;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-14.586;QD=10.85;ReadPosRankSum=-4.611;SOR=2.164;set=HC	GT:AD:AF:DP	0/1:306,94:0.23:400
chr16	33961563	rs112604583	C	G	5213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-15.006;QD=11.21;ReadPosRankSum=-7.199;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:319,146:0.31:465
chr16	33961580	rs80277405	C	A	7141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-16.669;QD=11.34;ReadPosRankSum=-5.355;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:379,251:0.40:630
chr16	33961607	rs77756910	G	T	13249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.497;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-19.064;QD=16.38;ReadPosRankSum=0.269;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:448,361:0.45:809
chr16	33961628	rs72797455	A	G	13724.73	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:410,376:0.48:786
chr16	33961658	rs78363140	A	G	13244.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.063;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-21.066;QD=17.43;ReadPosRankSum=5.079;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:393,367:0.48:760
chr16	33961658	.	AG	GA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=2;MGOF=115;MMLQ=19;MQ=49.11;NF=130;NR=142;PP=2944;QD=20;SC=GGTGGGTGCCAGGGGCCGTCC;SbPval=0.5;Source=Platypus;TC=568;TCF=265;TCR=303;TR=272;WE=33961680;WS=33961587;set=Platypus	GT:AD:AF:DP	0/1:296,272:0.48:568
chr16	33961659	rs72797456	G	A	15198.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-21.814;QD=20.05;ReadPosRankSum=6.357;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:368,390:0.51:758
chr16	33961671	.	C	A	11787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.749;ClippingRankSum=0.000;DP=689;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-18.688;QD=17.23;ReadPosRankSum=3.366;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:379,305:0.45:684
chr16	33961671	.	CT	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=115;MMLQ=24;MQ=48.83;NF=84;NR=98;PP=2944;QD=20;SC=GGCCGTCCGGCTTCCTAGGCG;SbPval=0.43;Source=Platypus;TC=548;TCF=240;TCR=308;TR=182;WE=33961680;WS=33961587;set=Platypus	GT:AD:AF:DP	0/1:366,182:0.33:548
chr16	33961672	rs72797457	T	G	12578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-20.038;QD=19.53;ReadPosRankSum=3.950;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:331,313:0.49:644
chr16	33961689	rs75866886	G	A	10555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-15.750;QD=18.55;ReadPosRankSum=-0.827;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:303,266:0.47:569
chr16	33961689	.	GC	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=1;MGOF=132;MMLQ=22;MQ=48.2;NF=72;NR=97;PP=2944;QD=20;SC=GCGGGGCGCCGCGGGACCTCC;SbPval=0.51;Source=Platypus;TC=512;TCF=216;TCR=296;TR=169;WE=33961713;WS=33961679;set=Platypus	GT:AD:AF:DP	1/0:343,169:0.33:512
chr16	33961690	rs75534331	C	G	10088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=-15.979;QD=17.86;ReadPosRankSum=-1.505;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:309,256:0.45:565
chr16	33961702	rs79080425	C	A	10107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.946;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-16.665;QD=20.13;ReadPosRankSum=-3.410;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:250,252:0.50:502
chr16	33961705	rs72797458	A	G	10137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-17.910;QD=21.34;ReadPosRankSum=-4.166;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:229,246:0.52:475
chr16	33961725	rs76585222	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=52.88;MQRankSum=-2.171;QD=0.46;ReadPosRankSum=-2.589;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:297,27:0.08:324
chr16	33961748	.	C	T	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.544;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=23.011;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-11.397;QD=7.13;ReadPosRankSum=-2.550;SOR=2.408;set=HC	GT:AD:AF:DP	0/1:136,51:0.27:187
chr16	33961752	rs77324679	TT	CG	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	0/1:116,47:0.29:163
chr16	33961759	.	G	C	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=11.894;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-9.163;QD=4.28;ReadPosRankSum=-0.369;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:117,23:0.16:140
chr16	33961768	rs115947274	T	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-8.200;QD=4.93;ReadPosRankSum=3.600;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr16	33961772	rs77705528	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.352;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-4.121;QD=4.53;ReadPosRankSum=2.988;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:90,18:0.17:108
chr16	33961779	rs74332681	C	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.007;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-3.334;QD=6.72;ReadPosRankSum=1.178;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr16	33961787	rs201829623	G	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=11.933;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-7.012;QD=4.15;ReadPosRankSum=-1.460;SOR=2.648;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr16	33961794	rs78260690	C	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-4.311;QD=6.79;ReadPosRankSum=-1.336;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:74,26:0.26:100
chr16	33961810	rs78551646	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-5.464;QD=4.10;ReadPosRankSum=0.193;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr16	33961846	.	C	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-4.757;QD=2.17;ReadPosRankSum=1.564;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr16	33961852	.	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-4.824;QD=2.47;ReadPosRankSum=1.425;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr16	33961855	rs72797460	T	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.04;MQRankSum=-6.165;QD=15.16;ReadPosRankSum=-1.418;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr16	33961869	.	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-5.340;QD=3.85;ReadPosRankSum=-0.044;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr16	33961873	rs75103985	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.467;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-1.195;QD=2.91;ReadPosRankSum=-0.833;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr16	33961877	rs75193282	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-1.251;QD=2.85;ReadPosRankSum=-0.715;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr16	33961878	rs76097628	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.873;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-2.228;QD=4.69;ReadPosRankSum=0.271;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	33961880	rs79165944	CA	TG	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.873;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-2.228;QD=4.69;ReadPosRankSum=0.233;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr16	33961902	rs72797463	C	G	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.253;QD=5.00;ReadPosRankSum=0.151;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr16	33961918	.	G	T	181	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=4;MGOF=99;MMLQ=27;MQ=53.96;NF=7;NR=11;PP=181;QD=11.987289586;SC=GACCAAACCCGGCTCCGCCTT;SbPval=0.81;Source=Platypus;TC=48;TCF=23;TCR=25;TR=18;WE=33961926;WS=33961907;set=Platypus	GT:AD:AF:DP	0/1:30,18:0.38:48
chr16	33962391	rs77260646	C	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-4.752;QD=5.06;ReadPosRankSum=-1.531;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr16	33962400	rs74410326	C	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-4.570;QD=7.13;ReadPosRankSum=-0.589;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr16	33962412	rs72797477	A	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-4.620;QD=7.24;ReadPosRankSum=0.425;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	33962416	rs75367546	G	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-4.649;QD=11.74;ReadPosRankSum=0.229;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr16	33962434	rs149073555	CG	C	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-4.416;QD=14.49;ReadPosRankSum=0.677;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr16	33962446	rs117915306	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-3.990;QD=19.25;ReadPosRankSum=0.403;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr16	33962456	rs75550881	G	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=-3.343;QD=23.62;ReadPosRankSum=0.000;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	33962470	rs74988619	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.73;MQRankSum=-3.403;QD=24.84;ReadPosRankSum=1.303;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	33962479	rs74016524	T	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=-3.604;QD=23.94;ReadPosRankSum=2.293;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	33965407	rs140145020	T	C	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.386;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=8.898;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=0.872;QD=17.93;ReadPosRankSum=1.046;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:40,34:0.46:74
chr16	33965407	.	TG	CA	1171	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=106;MMLQ=24;MQ=58.07;NF=24;NR=0;PP=1171;QD=51.0194947859;SC=GGAGCGCCCTTGCCAAATCCA;SbPval=1.0;Source=Platypus;TC=74;TCF=68;TCR=6;TR=24;WE=33965416;WS=33965399;set=Platypus	GT:AD:AF:DP	1/0:50,24:0.32:74
chr16	33965408	rs146483430	G	A	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.341;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.928;QD=12.48;ReadPosRankSum=0.585;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chr16	33965435	.	C	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-0.813;QD=2.99;ReadPosRankSum=-1.495;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr16	33965456	rs79575365	T	C	5999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.651;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=7.958;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-5.745;QD=25.00;ReadPosRankSum=-0.123;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:97,143:0.60:240
chr16	33965459	rs112675472	C	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=11.445;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-9.516;QD=1.34;ReadPosRankSum=1.450;SOR=1.856;set=HC	GT:AD:AF:DP	0/1:231,24:0.09:255
chr16	33965460	rs112558134	G	A	5139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-0.046;QD=19.77;ReadPosRankSum=-1.205;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:128,132:0.51:260
chr16	33965482	rs370138825	GA	G	7802.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:234,196:0.46:430
chr16	33965484	.	G	T	192.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-12.841;QD=0.44;ReadPosRankSum=-4.748;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:395,43:0.10:438
chr16	33965489	.	A	T	8246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=4.965;QD=17.22;ReadPosRankSum=2.739;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:263,216:0.45:479
chr16	33965493	.	T	C	9023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=5.333;QD=17.62;ReadPosRankSum=3.878;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:290,222:0.43:512
chr16	33965496	.	A	T	9220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=5.221;QD=17.08;ReadPosRankSum=3.219;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:303,237:0.44:540
chr16	33965505	rs375920374	C	T	10578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=5.396;QD=16.20;ReadPosRankSum=0.009;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:344,309:0.47:653
chr16	33965507	rs74614199	G	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:554,129:0.19:683
chr16	33965518	.	G	C	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;ClippingRankSum=0.000;DP=791;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-14.202;QD=2.51;ReadPosRankSum=-1.638;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:626,87:0.12:713
chr16	33965520	.	C	T	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DP=802;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-10.899;QD=2.12;ReadPosRankSum=-1.306;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:712,89:0.11:801
chr16	33965529	rs437324	C	T	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-9.989;QD=1.83;ReadPosRankSum=-0.184;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:764,99:0.11:863
chr16	33965533	rs78817399	A	C	26939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-10.645;QD=29.70;ReadPosRankSum=-1.172;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:253,654:0.72:907
chr16	33965533	.	ATTGCAGCCC	CTTGCGGCCT,CTTGTGGCCC	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=111;MMLQ=24;MQ=55.15;NF=144,124;NR=104,71;PP=2934,2934;QD=20;SC=TTCGAACGCAATTGCAGCCCG;SbPval=0.49;Source=Platypus;TC=605;TCF=354;TCR=251;TR=248,195;WE=33965550;WS=33965472;set=Platypus	GT:AF:DP	0/1:0.41:605
chr16	33965537	.	C	T	7839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;ClippingRankSum=0.000;DP=942;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-17.035;QD=8.35;ReadPosRankSum=-0.250;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:719,220:0.23:939
chr16	33965538	rs146300192	A	G	29510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-10.449;QD=31.13;ReadPosRankSum=-0.256;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:260,688:0.73:948
chr16	33965542	.	C	T	17248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DP=1004;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=5.451;QD=17.27;ReadPosRankSum=2.230;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:543,456:0.46:999
chr16	33965560	rs75603223	T	A	35873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=1164;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-9.605;QD=31.09;ReadPosRankSum=1.883;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:281,873:0.76:1154
chr16	33965560	.	TTGCCTGTCTG	ATGCCTGTCTA,ATGCCTGTCTG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=145;MMLQ=26;MQ=55.86;NF=117,342;NR=91,273;PP=2944,2962;QD=20;SC=TCCCAGGGCTTTGCCTGTCTG;SbPval=0.59;Source=Platypus;TC=737;TCF=403;TCR=334;TR=208,615;WE=33965603;WS=33965550;set=Platypus	GT:AF:DP	0/1:0.28:737
chr16	33965563	.	C	T	5056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DP=1165;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-5.914;QD=4.38;ReadPosRankSum=-2.561;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:960,195:0.17:1155
chr16	33965570	.	G	A	9282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=1284;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-17.918;QD=7.27;ReadPosRankSum=2.321;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:983,293:0.23:1276
chr16	33965582	rs199951204	C	T	20677.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=1293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=10.006;QD=16.89;ReadPosRankSum=0.362;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:660,564:0.46:1224
chr16	33965583	.	C	T	9987.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DP=1294;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-16.923;QD=7.78;ReadPosRankSum=3.920;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:976,308:0.24:1284
chr16	33965589	rs62030476	G	A	39272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=1283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-9.336;QD=30.85;ReadPosRankSum=2.052;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:246,1027:0.81:1273
chr16	33965595	.	C	A	10266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DP=1279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-16.037;QD=8.08;ReadPosRankSum=4.675;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:961,309:0.24:1270
chr16	33965618	.	C	T	10099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DP=1114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-17.131;QD=9.14;ReadPosRankSum=3.210;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:809,296:0.27:1105
chr16	33965627	rs74218440	T	C	9767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=1009;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-16.492;QD=10.57;ReadPosRankSum=2.946;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:652,272:0.29:924
chr16	33965636	.	G	A	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=911;ExcessHet=3.0103;FS=4.731;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=1.609;QD=1.24;ReadPosRankSum=1.556;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:789,90:0.10:879
chr16	33965642	.	TGA	T	2226.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DP=823;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-8.436;QD=2.75;ReadPosRankSum=3.190;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:641,170:0.21:811
chr16	33965644	rs72799208	A	G	15040.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=6.835;QD=19.11;ReadPosRankSum=-0.587;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:377,410:0.52:787
chr16	33965646	.	G	GCA	8167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DP=756;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-12.634;QD=12.17;ReadPosRankSum=1.848;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:445,226:0.34:671
chr16	33965655	rs113687113	C	A	10196.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:331,261:0.44:592
chr16	33965665	rs74016532	C	T	6703.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=572;MQ=59.64;set=Intersection	GT:AD:AF:DP	0/1:385,180:0.32:565
chr16	33965666	.	G	A	8089.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.940;ClippingRankSum=0.000;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=5.119;QD=14.82;ReadPosRankSum=1.285;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:340,206:0.38:546
chr16	33965669	.	C	G	7463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=4.612;QD=14.30;ReadPosRankSum=0.916;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:324,198:0.38:522
chr16	33965672	.	C	T	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DP=496;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.489;QD=1.71;ReadPosRankSum=2.265;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:434,55:0.11:489
chr16	33965681	.	G	GA	6650.73	.	AC=1;AF=0.500;AN=2;DP=441;set=Intersection	GT:AD:AF:DP	0/1:262,172:0.40:434
chr16	33965684	.	C	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.488;QD=1.98;ReadPosRankSum=2.738;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:356,46:0.11:402
chr16	33965687	rs78198861	C	T	4020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.129;QD=10.96;ReadPosRankSum=0.097;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:256,111:0.30:367
chr16	33965688	.	G	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.223;QD=2.51;ReadPosRankSum=1.885;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:318,45:0.12:363
chr16	33965690	rs74964080	C	T	5217.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:212,139:0.40:351
chr16	33965696	.	C	T	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=5.998;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.674;QD=5.59;ReadPosRankSum=-1.049;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:242,78:0.24:320
chr16	33965708	.	G	A	3661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.773;QD=15.52;ReadPosRankSum=-0.370;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:149,87:0.37:236
chr16	33965711	rs76711006	G	A	8135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.415;QD=36.98;ReadPosRankSum=-0.871;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:34,186:0.85:220
chr16	33965725	.	T	TC	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.570;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:130,27:0.17:157
chr16	33965727	.	C	T	2279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.486;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.584;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:95,59:0.38:154
chr16	33965729	.	T	C	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.730;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.928;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:109,40:0.27:149
chr16	33965731	.	C	T	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.426;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.742;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:88,56:0.39:144
chr16	33965735	.	C	T	2022.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.906;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=14.66;ReadPosRankSum=1.314;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:85,53:0.38:138
chr16	33965736	rs74212775	G	A	1214.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-5.074;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-1.748;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:100,37:0.27:137
chr16	33965741	rs111610856	C	T	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.785;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=18.68;ReadPosRankSum=1.639;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:60,68:0.53:128
chr16	33965754	rs111429621	C	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.730;QD=5.98;ReadPosRankSum=-0.518;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr16	34257273	rs115084685	C	T	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:4,281:0.99:285
chr16	34318731	rs6563853	T	G	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	34681938	rs237988	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	34682019	rs237989	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	46565019	rs1436436	T	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	46637746	rs4967259	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	46651417	rs34949348	TA	T	161.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	46655210	rs6598679	A	G	5932.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	46696284	rs168745	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	46705502	rs36310	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	46714529	rs700582	A	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	46715191	rs700581	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	46743675	rs4141491	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	46744709	rs114652511	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	46755213	rs194055	C	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	46764482	rs36460	A	C	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr16	46773752	rs28185	G	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	46858579	rs71134504	C	CT	47	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	47117808	rs2231981	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	47177342	rs139415485	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	47192757	rs16952886	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	47252866	rs11453690	G	GA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.724;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr16	47271876	rs8044842	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	47345091	rs7499413	G	A	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	47409947	rs7185641	C	T	81.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	47486559	rs16945358	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	47621573	rs56268318	G	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	47694821	rs7195074	G	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	47695459	rs8054582	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	47697618	rs16945474	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	47698716	rs1011532	T	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	48145649	rs28526661	G	T	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr16	48149467	rs9302750	A	G	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	48151034	rs16945813	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr16	48151198	rs16945816	T	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	48151363	rs16945819	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	48155445	rs16945831	C	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	48167574	rs9940987	C	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	48174559	rs16945869	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr16	48175235	rs16945874	G	T	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	48576801	rs11866667	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	49412531	rs27813	A	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	49430229	rs27795	C	T	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	49557441	rs2287313	A	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	49557482	rs2287314	C	T	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	49670026	rs35529066	G	A	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	49672376	rs16947744	G	A	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	49764948	rs2292155	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	50059279	rs9934704	C	A	917.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.94;ReadPosRankSum=1.978;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr16	50059314	rs9924833	A	G	637.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=-0.654;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr16	50059500	rs7194313	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	50067513	.	G	A	819.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	50067905	rs9302745	G	A	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	50100274	rs6500280	G	C	11046.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	50102618	rs60730387	G	GAAAT	2805.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	50109478	rs12931497	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	50112971	rs66756058	GT	G	108.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	50117828	rs5816672	CT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.411;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr16	50118245	rs877639	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	50120122	rs2287196	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	50251590	rs3887556	G	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	50251671	rs10530119	G	GTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTCTC	808.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/1:1.00:19
chr16	50259213	rs375486130	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	50261735	rs4624170	C	T	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	50326661	rs8051594	A	G	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr16	50327439	rs2302712	A	G	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	50327456	rs2302713	C	T	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.96;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	50327462	rs2302714	G	A	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.92;SOR=1.634;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	50328421	rs2302716	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	50334840	rs3833062	AG	A	2939.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	50335150	rs35262781	TG	T	2701.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	50338723	rs9924714	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	50339289	rs12444679	C	T	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	50342658	rs17289102	C	T	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	50342847	rs2302681	C	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	50345710	.	GCCC	G,GC	1901.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.36;SOR=1.519;set=HC	GT:AD:AF:DP	1/2:0,30,27:0.53,0.47:57
chr16	50346748	rs3214383	T	TCC	1142.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	50348409	rs9926131	A	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50354039	rs55820113	CAAAA	C	1853.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	50355741	rs9922362	G	A	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	50367633	rs56370009	T	TA	213.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=19.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	50402240	rs62029995	C	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	50640785	rs9940490	T	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	50641988	rs2357620	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	50642137	rs730055	T	C	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	50642201	rs933566	G	C	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	50642364	rs73571947	G	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	50702042	rs4258614	G	C	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	50711334	rs1131716	G	A	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	50733859	rs2067085	C	G	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	50733969	rs2111235	A	G	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	50757050	rs11423748	G	GA	91.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.13;ReadPosRankSum=1.221;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	50827601	rs2302759	A	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	51098427	rs1528601	G	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	51171175	rs4614723	C	T	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr16	51173823	rs61740811	G	A	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	51176147	rs59785450	T	C	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	51177113	rs4399530	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	51177327	rs34204387	G	GA,GAA	2475.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.712;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=-0.482;SOR=0.486;set=HC	GT:AD:AF:DP	1/2:6,73,44:0.59,0.36:123
chr16	52085593	rs1582317	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr16	52085924	rs73589541	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr16	52107849	rs33338	C	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	52473263	rs9925256	A	G	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	52484079	rs67375262	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr16	52502318	rs2287144	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,98:0.78:125
chr16	52502571	rs9928698	A	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr16	52580500	rs3095602	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.163;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:84,35:0.29:119
chr16	52785055	rs145164444	AGGAGG	A	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=0.000;QD=8.06;ReadPosRankSum=0.788;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr16	52785272	rs79660453	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr16	52837322	rs4784259	A	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	52837537	rs200632213	A	AAGG	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.712;QD=32.94;ReadPosRankSum=-1.642;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr16	52992947	rs9933492	T	C	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	52993016	rs9931362	A	C	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr16	53035331	rs74018575	A	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr16	53035390	rs74018576	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:76,43:0.36:119
chr16	53035593	rs149966713	G	GC	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	53035605	rs114052562	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	53037359	rs16951903	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr16	53037529	rs6499205	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	53075934	rs16951957	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr16	53319390	rs112281896	T	TAATGA	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	53341748	rs6499548	T	G	7182.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	53404004	rs11860669	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.411;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:138,44:0.24:182
chr16	53404203	rs10775327	C	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr16	53404903	rs13333142	T	A	8234.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:200,384:0.66:584
chr16	53468773	.	G	A	291.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	53476804	rs17800577	G	A	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	53487218	rs9941254	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	53496598	rs7204496	G	A	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	53499599	rs1072910	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	53503934	rs1131220	G	A	19861.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.45;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr16	53503934	.	GCCTGGGCGC	ACCTGGGCGC,ACCTGGGCGG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=193,69;NR=164,60;PP=2962,1815;QD=20;SC=ATGGAGGGACGCCTGGGCGCA;SbPval=0.53;Source=Platypus;TC=358;TCF=194;TCR=164;TR=357,129;WE=53503951;WS=53503924;set=Platypus	GT:AF:DP	0/1:1.00:358
chr16	53503943	rs11540358	C	G	3997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.155;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:391,222:0.36:613
chr16	53504721	rs10748	T	C	8079.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	53513033	rs8043918	C	T	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	53513055	rs8049033	T	C	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	53524308	rs3929	G	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	53526551	rs9931702	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	53532165	rs189120131	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr16	53534095	rs17193678	T	A	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.684;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,82:0.65:127
chr16	53635933	rs4784319	A	T	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.935;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr16	53656135	rs111775292	G	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.609;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	53672355	rs7203525	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr16	53699003	rs4133017	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr16	53706694	rs35526952	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr16	53738283	rs4783818	A	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr16	53843960	.	ATTTG	A	625.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr16	53860481	rs3826169	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	53878247	rs62033438	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr16	53913636	rs16952616	C	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr16	53913782	rs148109727	T	C	8223.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:198,388:0.66:586
chr16	53913911	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.029;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	54018921	rs16952730	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:176,81:0.32:257
chr16	54145564	rs114204575	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.301;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr16	54318102	rs8050831	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	54318528	rs1450355	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	54319571	rs1868692	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	54319994	rs1868691	G	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	54602769	rs112946517	G	GGGAGAA	1544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.14;ReadPosRankSum=-1.525;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr16	54602890	rs16953701	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:201,101:0.33:302
chr16	55359126	rs31078	A	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:107,42:0.28:149
chr16	55359141	rs31079	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,37:0.29:127
chr16	55360208	rs31081	G	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=19.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-0.004;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr16	55361493	rs31082	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=2.466;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr16	55515695	rs708269	A	T	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.622;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:82,130:0.61:212
chr16	55515760	rs17859853	G	A	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.250;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:93,62:0.40:155
chr16	55516708	rs857403	T	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	55519607	rs1053605	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:198,102:0.34:300
chr16	55523705	rs243849	T	C	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	55525913	rs243846	G	C	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	55527026	rs11640428	A	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr16	55527113	rs2287074	G	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:180,99:0.35:279
chr16	55527298	rs243843	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	55530762	rs171498	G	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.360;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	55530772	rs243838	T	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.99;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	55532458	rs2287076	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr16	55536622	rs243835	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:50,13:0.21:63
chr16	55536687	rs243834	A	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:139,51:0.27:190
chr16	55539191	rs243832	C	G	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.579;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:110,66:0.38:176
chr16	55583149	rs2160277	T	A	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr16	55612918	rs4784549	T	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	55728081	rs28613651	T	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	55731735	rs8047672	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	55733589	rs1800887	T	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	55739006	rs6499773	T	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	55804073	rs77033107	T	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr16	55806311	rs28538364	G	T	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:219,104:0.32:323
chr16	55806409	rs28366434	T	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:174,114:0.40:288
chr16	55806532	rs143032941	C	CAATACCT	2418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.008;QD=13.44;ReadPosRankSum=1.048;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:113,67:0.37:180
chr16	55807252	rs62030211	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-2.137;QD=2.18;ReadPosRankSum=1.346;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr16	55807256	rs60044394	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-1.827;QD=2.18;ReadPosRankSum=0.698;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:79,11:0.12:90
chr16	55813552	rs28666799	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr16	55813600	rs28538101	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr16	55813644	rs28418425	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr16	55813712	rs28613114	G	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.536;QD=3.81;ReadPosRankSum=0.121;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr16	55813750	rs28594163	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.758;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr16	55844609	rs2244613	G	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.94;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	55844609	.	GGGTGAGCG	TGGTGAGCA,TGGTGAGCG	671	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=16,44;NR=20,50;PP=407,671;QD=12.7907743017;SC=CACCAGCCCCGGGTGAGCGAT;SbPval=0.65;Source=Platypus;TC=94;TCF=44;TCR=50;TR=36,94;WE=55844625;WS=55844599;set=Platypus	GT:AF:DP	0/1:0.38:94
chr16	55844617	rs2244614	G	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-0.468;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:99,70:0.41:169
chr16	55844926	rs112236246	A	AC	1361.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr16	55845084	.	T	TG	1489.73	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	55845122	rs146150314	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=2.875;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr16	55847045	rs3859092	A	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	55847051	rs3859093	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	55850708	rs2302719	T	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	55854246	.	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=0.842;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr16	55854259	rs2307237	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=1.242;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr16	55854412	rs2307229	A	T	1914.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=1.315;QD=19.15;ReadPosRankSum=0.055;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:12,88:0.88:100
chr16	55854452	rs2307233	G	A	3371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=1.665;QD=36.26;ReadPosRankSum=3.933;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,83:0.89:93
chr16	55854455	rs2307235	A	C	3393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=1.851;QD=36.89;ReadPosRankSum=4.206;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:10,82:0.89:92
chr16	55854514	rs8192940	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	55857396	rs150951789	A	C	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=48.77;MQRankSum=1.694;QD=13.49;ReadPosRankSum=-1.394;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr16	55857498	rs147694791	G	C	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:314,157:0.33:471
chr16	55862583	rs77360769	G	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-1.796;QD=0.51;ReadPosRankSum=-2.231;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:166,14:0.08:180
chr16	55862590	rs79821028	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.704;QD=0.27;ReadPosRankSum=-1.946;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:182,16:0.08:198
chr16	55862605	rs3848300	G	A	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	55862647	rs62028646	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.306;QD=1.16;ReadPosRankSum=-1.444;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:362,73:0.17:435
chr16	55862691	rs62028647	G	A	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.197;QD=1.81;ReadPosRankSum=3.117;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:402,93:0.19:495
chr16	55862717	rs76828834	T	C	2278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.926;QD=5.65;ReadPosRankSum=0.839;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:324,79:0.20:403
chr16	55862720	rs74019278	T	C	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.884;QD=5.79;ReadPosRankSum=0.597;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:315,78:0.20:393
chr16	55862762	rs3826194	C	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-10.162;QD=2.18;ReadPosRankSum=-1.338;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:245,56:0.19:301
chr16	55862791	rs114632091	T	C	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-16.812;QD=2.51;ReadPosRankSum=-0.098;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:273,72:0.21:345
chr16	55862824	rs3826192	C	T	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-16.094;QD=5.86;ReadPosRankSum=0.558;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:364,114:0.24:478
chr16	55862836	rs3826191	G	A	3017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-16.663;QD=5.49;ReadPosRankSum=1.151;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:417,133:0.24:550
chr16	55862883	rs3826190	C	A	2902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-18.574;QD=3.73;ReadPosRankSum=3.290;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:614,164:0.21:778
chr16	55862901	rs3826189	T	G	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-17.716;QD=2.46;ReadPosRankSum=1.895;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:624,150:0.19:774
chr16	55867006	rs12149371	T	C	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:114,172:0.60:286
chr16	55883618	rs2160276	T	C	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:81,147:0.64:228
chr16	55883761	rs7186875	A	C	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr16	55890398	rs9937572	G	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:147,73:0.33:220
chr16	55903548	rs13338753	G	A	7361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.507;QD=26.11;ReadPosRankSum=-0.041;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:103,179:0.63:282
chr16	55903554	rs13338754	G	A	7589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.488;QD=24.72;ReadPosRankSum=-0.591;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:109,198:0.64:307
chr16	55903666	rs13338809	G	A	8673.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:192,411:0.68:603
chr16	55905636	rs3859108	A	G	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	55907811	rs2397965	C	T	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr16	55909163	rs7194945	T	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	56226638	rs374523415	GCA	G	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.881;QD=14.23;ReadPosRankSum=0.666;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	56228066	rs1190761	A	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	56368689	rs1065375	C	T	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:397,199:0.33:596
chr16	56377748	rs1799917	A	G	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:422,169:0.29:591
chr16	56396486	rs4924	C	T	11798.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr16	56401294	rs2241957	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	56423368	.	C	T	397.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr16	56436824	rs2440472	A	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	56441862	rs2920704	A	G	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	56442066	rs4238787	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	56458908	rs140279056	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	56459332	.	T	TCGCTGCCGCTGC	949.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;QD=49.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	56468561	rs8056687	C	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	56485140	rs201408407	G	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,73:0.68:107
chr16	56519423	rs8062526	T	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	56535510	rs9929628	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr16	56540190	rs4784675	G	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,62:0.44:142
chr16	56548501	rs4784677	C	T	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	56599221	rs182221	C	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr16	56601720	rs666636	A	G	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	56601720	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=24;MQ=60.0;NF=60;NR=60;PP=2947;QD=20;SC=TGTAAAACATATTGGAAGAGT;SbPval=0.52;Source=Platypus;TC=123;TCF=62;TCR=61;TR=120;WE=56601730;WS=56601710;set=Platypus	GT:AD:AF:DP	1/1:3,120:0.98:123
chr16	56601722	rs666647	T	C	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	56623191	rs7195310	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	56623644	rs45439897	C	A	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:520,237:0.31:757
chr16	56666886	rs1827208	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr16	56667282	rs1827210	C	A	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:106,65:0.38:171
chr16	56667614	rs2270836	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,26:0.29:89
chr16	56667785	rs9936741	T	C	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:77,142:0.65:219
chr16	56667854	rs2270837	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr16	56673227	rs11640851	C	A	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.335;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr16	56673249	rs11647171	T	C	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.215;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:179,92:0.34:271
chr16	56673436	rs58069153	A	AAG	4573.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	56683626	rs7189840	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=-0.464;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	56686002	rs2070838	G	C	1917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.233;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.202;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:116,55:0.32:171
chr16	56686005	rs4619400	T	A	1917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.266;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:114,55:0.33:169
chr16	56686030	rs964372	C	G	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr16	56686470	rs12051311	C	T	4912.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:549,289:0.34:838
chr16	56686510	rs61744104	G	C	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:156,326:0.68:482
chr16	56687031	rs35231457	AT	A	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.621;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:98,66:0.40:164
chr16	56693261	rs2291957	G	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	56702000	rs904770	T	C	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	56709728	rs8046181	GA	CG	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	56716316	.	G	T	1998.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:51,87:0.63:138
chr16	56718015	rs34700091	AT	A,ATT	666.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.002;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.470;SOR=0.909;set=HC	GT:AD:AF:DP	1/2:23,54,36:0.48,0.32:113
chr16	56832302	rs9927884	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr16	56852822	rs1561139	G	T	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	56855496	rs2118017	C	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	56864398	rs1561140	C	T	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.10;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	56864398	.	CT	TC,TT	1181	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=44,53;NR=31,37;PP=1181,53;QD=16.4595716648;SC=AGCAGTCAGCCTTTCCTTGTT;SbPval=0.5;Source=Platypus;TC=91;TCF=54;TCR=37;TR=75,90;WE=56864407;WS=56864388;set=Platypus	GT:AF:DP	0/1:0.82:91
chr16	56864399	rs201054475	T	C	2571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.896;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:49,117:0.70:166
chr16	56864618	rs4461062	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr16	56865705	rs376612590	G	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr16	56867191	rs149503681	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.809;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr16	56868700	rs1347591	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr16	56871469	rs145442551	TTTTATTGATTAC	T	886.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.868;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=10.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.084;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:126,31:0.20:157
chr16	56872722	rs3764265	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,30:0.30:101
chr16	56876467	rs5817078	CT	C	150.74	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr16	56878549	rs16962807	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:42,64:0.60:106
chr16	56900931	rs13306673	C	T	3924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=0.667;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:67,180:0.73:247
chr16	56904587	rs1529927	C	G	11453.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr16	56904752	rs71152213	C	CT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.869;QD=7.40;ReadPosRankSum=0.574;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr16	56906489	rs35516802	G	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	56911932	.	G	GTCCCTCCCTCCCTCTCTCCC	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=30.284;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.363;QD=12.05;ReadPosRankSum=-0.519;SOR=5.080;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr16	56917953	rs2304483	T	C	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:78,140:0.64:218
chr16	56919073	rs11076172	G	A	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.884;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:345,160:0.32:505
chr16	56926176	rs12443855	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr16	56926828	rs2278489	T	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	56933315	rs9922270	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr16	56966011	rs37025	G	A	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr16	56966071	rs37024	T	G	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr16	56994394	rs61631085	GT	G	1454.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:5,79:0.94:84
chr16	56994528	rs17231506	C	T	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:217,122:0.36:339
chr16	56994894	rs4783961	G	A	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:211,94:0.31:305
chr16	56995038	rs4783962	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	56995124	rs17237883	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.206;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	56995236	rs1800775	C	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	56996158	rs3816117	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	56996211	rs711752	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,51:0.35:144
chr16	56996288	rs708272	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:106,49:0.32:155
chr16	56997072	rs9935228	A	G	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:85,165:0.66:250
chr16	57003723	rs891141	G	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	57003846	rs34716057	C	T	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:211,336:0.61:547
chr16	57003977	rs891142	T	C	19241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.456;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.63;ReadPosRankSum=1.062;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:1,440:1.00:441
chr16	57003980	rs891143	T	C	19144.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.73;ReadPosRankSum=1.167;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:1,427:1.00:428
chr16	57005764	rs12720871	C	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr16	57007446	rs11076176	T	G	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	57015463	rs7195984	G	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	57015545	rs1800774	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.609;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:141,49:0.26:190
chr16	57016092	rs5882	G	A	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr16	57017474	rs289741	G	A	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	57017762	rs289742	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	57056295	rs149634155	AGGAGGCTGT	A	1314.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr16	57057619	rs1684575	G	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:251,107:0.30:358
chr16	57057654	rs1672865	A	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:351,140:0.29:491
chr16	57059241	rs56132500	G	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr16	57059280	rs113208427	A	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:93,159:0.63:252
chr16	57060667	rs34984588	C	T	5817.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:183,255:0.58:438
chr16	57060724	rs13339199	G	A	9930.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:273,470:0.63:743
chr16	57061924	rs113162434	G	A	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:96,171:0.64:267
chr16	57062177	rs1684576	T	A	9251.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=0.561;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,359:0.99:361
chr16	57063675	rs79189186	C	A	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:120,329:0.73:449
chr16	57069992	rs113408105	C	T	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:71,138:0.66:209
chr16	57070004	rs11409789	C	CT	7147.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	57070164	rs116732890	G	A	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.635;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr16	57070164	.	GT	AC	169	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=1;HapScore=3;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=10;PP=169;QD=18.5389895719;SC=CCCCGTGTTCGTAATCAGCAG;SbPval=0.82;Source=Platypus;TC=20;TCF=5;TCR=15;TR=12;WE=57070173;WS=57070154;set=Platypus	GT:AD:AF:DP	1/0:8,12:0.60:20
chr16	57070165	rs1651668	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.07;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	57071113	rs1684579	TA	CG	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	57071209	rs9926871	T	C	9593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.591;QD=15.68;ReadPosRankSum=-1.401;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:160,452:0.74:612
chr16	57071226	rs142016487	TCC	T	16780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.599;QD=29.91;ReadPosRankSum=0.488;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:149,412:0.73:561
chr16	57071232	rs1684580	C	G	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.583;QD=3.52;ReadPosRankSum=-0.180;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:445,149:0.25:594
chr16	57071236	rs55857123	C	T	17235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.580;QD=29.61;ReadPosRankSum=1.036;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:148,434:0.75:582
chr16	57071335	rs1651670	G	A	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	57071375	rs1672866	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	57073683	rs864750	G	C	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr16	57074451	rs289726	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=1.106;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr16	57074671	rs59957141	C	T	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=-0.301;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:32,70:0.69:102
chr16	57075781	rs289727	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr16	57075912	rs73546859	G	A	2852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.185;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:254,158:0.38:412
chr16	57076115	rs158482	T	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	57089130	rs1167512	C	A	9429.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr16	57095835	rs200874338	T	TAAGAAAAAAAGA	4611.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	57103579	rs289710	G	A	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	57103854	rs289711	T	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr16	57110635	rs10500405	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr16	57110711	.	T	TCTA	3698.73	.	AC=1;AF=0.500;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	0/1:207,104:0.33:311
chr16	57111364	rs34702866	G	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	57111993	rs11432614	T	TG	2159.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	57112001	rs75220858	T	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	57113229	rs42221	A	G	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	57113291	rs78845475	T	G	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr16	57114924	rs154045	A	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	57114982	rs154044	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr16	57115274	rs154043	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	57116287	rs27195	A	G	9325.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr16	57116514	rs27194	T	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	57127883	rs9926472	C	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	57128096	rs8051658	G	A	5812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.22;ReadPosRankSum=1.348;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:92,148:0.62:240
chr16	57128099	rs8057953	T	C	5823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-1.125;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:76,145:0.66:221
chr16	57144920	rs8053682	TG	AC	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	57159248	rs4784771	C	T	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:207,141:0.41:348
chr16	57159402	rs4784772	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr16	57160026	rs2278985	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr16	57171233	rs2305693	C	G	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	57197745	rs62037356	G	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	57249981	rs11391063	A	AT	3248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.005;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:170,260:0.60:430
chr16	57255363	rs7206038	T	C	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	57255435	rs77316426	T	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr16	57261146	rs11643790	A	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	57392602	rs73557184	G	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr16	57392733	rs4359426	A	C	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr16	57394356	rs34057704	C	T	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:254,137:0.35:391
chr16	57481305	rs178602	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	57494178	rs223868	T	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	57495026	rs223870	T	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	57496494	rs178601	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	57496931	rs223837	G	C	7749.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	57497353	rs113857623	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr16	57497579	rs73561591	C	A	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	57499782	rs1114156	T	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	57499902	rs4937	T	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	57503773	rs223874	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	57507991	rs75862393	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:105,54:0.34:159
chr16	57509164	rs223877	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	57513542	.	G	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.111;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	57551966	rs28649020	A	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr16	57552088	rs28756858	T	C	5454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=905;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.360;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:574,321:0.36:895
chr16	57552277	rs11865877	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr16	57555076	rs28446687	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,44:0.36:121
chr16	57562423	rs8045906	T	C	10243.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr16	57562804	rs12935069	G	A	11929.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,471:1.00:472
chr16	57563111	rs4784815	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	57598779	rs148143320	A	AAGGCTGGG	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.298;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr16	57602001	rs74019570	G	A	4651.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:138,221:0.62:359
chr16	57608955	rs7196203	C	T	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	57609624	rs6499885	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	57624549	rs67587091	G	A	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	57625470	rs11646739	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	57637468	rs1982394	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr16	57687314	rs2305307	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	57689230	rs200184349	G	GGT	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr16	57689385	rs1801257	C	G	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:75,165:0.69:240
chr16	57689482	rs145581686	G	GT	2898.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:86,149:0.63:235
chr16	57689883	rs1376041	T	C	3263.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	57690319	rs2305308	A	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr16	57690711	rs8060868	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	57697513	rs74022020	C	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:197,103:0.34:300
chr16	57697532	rs10852554	T	G	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	57697568	rs10852555	C	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	57697592	rs74022021	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr16	57702232	rs56288453	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:95,58:0.38:153
chr16	57702473	rs7205731	T	C	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	57707435	rs72793599	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr16	57710077	rs72793600	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr16	57713250	rs4238795	C	T	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr16	57713534	rs9925766	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,75:0.64:117
chr16	57713536	rs4784006	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr16	57713679	rs9935751	C	A	21579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=1.685;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:366,552:0.60:918
chr16	57713685	rs9925879	A	C	21440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.72;ReadPosRankSum=1.182;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:359,545:0.60:904
chr16	57722328	rs12444859	C	T	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.393;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:191,101:0.35:292
chr16	57723752	rs9939524	A	G	7187.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:201,338:0.63:539
chr16	57724078	rs9929288	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr16	57724800	rs113402969	AAT	A	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr16	57724932	rs201650396	TA	T	1177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=26.17;ReadPosRankSum=-1.640;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr16	57724941	rs77948765	A	G	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=26.26;ReadPosRankSum=-0.716;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:15,31:0.67:46
chr16	57725063	rs200025417	AAGAAGGAGGG	A	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-1.799;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr16	57732888	rs11648684	G	A	8685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.905;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:248,411:0.62:659
chr16	57736047	rs72795521	G	A	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.076;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:135,47:0.26:182
chr16	57741662	rs79419641	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr16	57755789	rs58935089	A	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr16	57756564	rs3826094	G	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr16	57758508	rs12598604	A	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr16	57758732	rs2923144	C	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,108:0.62:173
chr16	57759844	rs4784008	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	57762298	rs57064649	A	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:98,118:0.55:216
chr16	57762401	rs2923147	T	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:71,115:0.62:186
chr16	57771126	rs1061546	G	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr16	57771337	rs58845971	A	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr16	57775537	rs61620199	C	T	5261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.255;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:122,236:0.66:358
chr16	57778488	rs2967152	A	G	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-2.195;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:223,99:0.31:322
chr16	57778550	rs2967153	C	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	57785813	rs34438625	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:126,64:0.34:190
chr16	57786415	rs7185975	C	T	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:288,159:0.36:447
chr16	57789472	rs77524524	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr16	57790920	rs6994	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr16	57792657	rs80180585	C	G	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:582,249:0.30:831
chr16	57796236	rs113626648	G	A	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:511,245:0.32:756
chr16	57797949	rs58535973	C	T	12532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.082;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:330,590:0.64:920
chr16	57806030	rs2965789	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr16	57822440	rs74022043	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr16	57822734	rs74022044	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:41,100:0.71:141
chr16	57837462	rs8043981	C	A	108.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	57918268	rs7190372	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:129,56:0.30:185
chr16	57921752	rs11076207	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr16	57931205	rs60885635	C	CA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=1.254;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr16	57937856	rs413562	G	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:113,63:0.36:176
chr16	57937895	rs437920	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr16	57946937	rs8044629	A	T	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.143;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:137,51:0.27:188
chr16	57946973	rs434961	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr16	57950178	rs440565	G	C	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:107,155:0.59:262
chr16	57950270	rs4784871	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr16	57951394	rs3991715	T	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:15,57:0.79:72
chr16	57951421	rs691490	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.192;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	57952870	rs489106	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	57954268	rs166000	A	G	9697.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:3,382:0.99:385
chr16	57954448	rs2161703	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr16	57957138	rs247065	G	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	57973989	rs2303779	G	A	4751.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:103,217:0.68:320
chr16	57974240	rs2303778	G	A	5178.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:105,230:0.69:335
chr16	57983274	.	T	TTCC	3020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=3.731;QD=11.49;ReadPosRankSum=0.168;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:116,147:0.56:263
chr16	57984483	rs152143	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	57989291	rs115148978	C	T	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:55,114:0.67:169
chr16	57991123	rs34759686	GC	G	1950.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	57991317	rs503686	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:100,44:0.31:144
chr16	57992119	rs399634	T	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr16	57992229	rs147036428	G	GGGTCCCTTCTTCCTACTGTGCCTTCACACCCCAGGGACACA	8038.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.901;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=88.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.89;ReadPosRankSum=-3.723;SOR=4.340;set=HC	GT:AD:AF:DP	0/1:230,69:0.23:299
chr16	57992499	rs73545176	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.663;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr16	57994737	rs16959600	G	C	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:115,192:0.63:307
chr16	57996474	rs16959602	G	A	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:87,200:0.70:287
chr16	57996960	rs13336595	C	T	8572.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	57998124	rs115569700	A	G	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.232;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:50,75:0.60:125
chr16	57998345	rs3859043	C	T	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	57998638	rs74338843	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr16	58019065	rs35768173	TG	T	5472.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	58019070	rs2304485	G	C,T	5224.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=131;set=Intersection	GT:AF:DP	1/2:0.38,0.62:130
chr16	58019396	rs9934227	G	A	24212.77	.	AC=2;AF=1.00;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	1/1:1,952:1.00:953
chr16	58021395	rs2241771	A	C	9347.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr16	58030401	rs3743555	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	58030634	rs3743556	C	T	15938.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr16	58035652	rs12599089	A	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	58036347	rs3743560	G	A	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.277;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:169,71:0.30:240
chr16	58052974	rs16959640	C	T	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:108,168:0.61:276
chr16	58053161	rs3743562	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	58072153	rs2241774	C	T	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,59:0.38:155
chr16	58075578	rs200994796	G	A	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:514,296:0.37:810
chr16	58076422	rs2118018	A	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	58079204	rs41434246	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr16	58148024	rs112009407	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chr16	58200464	rs112507755	ACT	A	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.650;QD=1.73;ReadPosRankSum=-0.940;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:158,27:0.15:185
chr16	58218129	rs112704813	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:250,128:0.34:378
chr16	58220580	rs140769300	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:166,84:0.34:250
chr16	58230603	rs111299682	G	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.356;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:110,62:0.36:172
chr16	58292197	rs180911132	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr16	58296542	rs9923694	T	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.174;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.871;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr16	58296545	rs3815802	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	58301385	rs35986384	C	G	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:55,99:0.64:154
chr16	58312357	rs80172997	CT	C	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr16	58312699	rs112414360	A	ATTTT	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.674;QD=15.98;ReadPosRankSum=-0.103;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	58312702	.	T	TTTTTG	39	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=27;MQ=60.57;NF=0;NR=4;PP=39;QD=31.7756880851;SC=AAGGATGATTTGTTTTTTTTG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=58312710;WS=58312692;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr16	58312703	rs142772910	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.27;ReadPosRankSum=0.358;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	58313566	rs6499945	T	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=2.046;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:52,29:0.36:81
chr16	58313578	rs71155257	CT	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.428;QD=2.80;ReadPosRankSum=-0.431;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:64,32:0.33:96
chr16	58313749	rs16960012	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr16	58314433	rs2241414	T	C	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:80,126:0.61:206
chr16	58314598	rs1052276	C	T	4615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=1.101;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:106,213:0.67:319
chr16	58314736	rs77015310	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr16	58318604	rs3815803	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:135,97:0.42:232
chr16	58318672	rs140625002	T	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:81,64:0.44:145
chr16	58318710	rs116552128	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-2.830;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr16	58318721	rs11313996	AT	A	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=-0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.45;ReadPosRankSum=-0.129;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr16	58320211	rs4784916	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	58324807	rs3803582	T	C	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,87:0.68:128
chr16	58327646	rs2288012	A	G	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	58426703	rs13334093	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr16	58428980	rs10707626	AT	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.14;ReadPosRankSum=1.939;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	58429241	rs200370113	AT	A	139.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.91;ReadPosRankSum=1.036;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr16	58438652	rs11649008	A	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,53:0.79:67
chr16	58528736	rs371388096	T	TAA	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.519;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr16	58533932	rs982697	A	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	58537897	rs2427787	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr16	58538662	rs9928398	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	58540058	rs200871998	GTGTC	G	56.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.552;QD=1.53;ReadPosRankSum=1.750;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr16	58540060	rs72499708	GTC	G	724.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.970;QD=19.59;ReadPosRankSum=-1.090;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr16	58540531	rs2271948	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,52:0.73:71
chr16	58544640	rs12597973	C	G	5010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=2.088;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:133,233:0.64:366
chr16	58545426	rs42945	A	G	10441.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr16	58549932	rs4784046	T	C	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.52;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	58550028	.	T	TGGGGCGGGGC	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.000;QD=22.43;ReadPosRankSum=-1.083;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	58550052	.	G	GCGGGGCGGTT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.217;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr16	58550300	rs77328516	A	AAC	15455.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	58552228	rs2280397	G	A	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr16	58552921	rs3607	G	A	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	58557209	rs71155275	G	GA	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr16	58561954	rs37057	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr16	58566304	rs37060	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr16	58566325	rs115342267	G	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr16	58570812	rs76735595	C	T	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr16	58571185	rs2244453	C	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	58571185	.	CGCAT	TGCAC,TGCAT	467	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=4,12;NR=8,30;PP=68,467;QD=10.1223229052;SC=TACAGACATACGCATGTATAG;SbPval=0.46;Source=Platypus;TC=42;TCF=12;TCR=30;TR=12,42;WE=58571197;WS=58571175;set=Platypus	GT:AF:DP	0/1:0.29:42
chr16	58571189	rs2243463	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=1.443;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr16	58572200	rs76062938	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr16	58573901	rs246194	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	58573946	rs246195	C	T	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	58575489	rs11540994	G	A	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:140,244:0.64:384
chr16	58577315	rs5817153	GA	G	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.958;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:80,31:0.28:111
chr16	58577421	rs41260	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	58577939	rs75133019	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	58579158	rs42947	A	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.127;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	58579274	rs246258	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.788;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:86,39:0.31:125
chr16	58580213	rs2241570	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:60,133:0.69:193
chr16	58580519	rs246197	A	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:131,63:0.32:194
chr16	58580530	rs173475	T	C	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.149;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:160,70:0.30:230
chr16	58585178	.	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-1.255;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr16	58587737	rs11866002	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:137,180:0.57:317
chr16	58589112	rs1568399	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr16	58589945	rs78796375	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr16	58593926	rs79398002	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr16	58594340	rs71739184	AT	A	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.733;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr16	58612510	rs35176616	T	TA	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	58622596	rs34716647	TC	T	1558.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr16	58703966	rs9923128	A	G	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:119,257:0.68:376
chr16	58704919	rs373423998	G	A	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:128,78:0.38:206
chr16	58709824	rs34833577	TG	T	2821.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:71,123:0.63:194
chr16	58711470	rs7201899	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr16	58712497	rs9922337	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr16	58713894	rs7193572	A	G	6450.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:218,309:0.59:527
chr16	58743454	rs30842	A	C	7916.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	58750604	rs1058192	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	58750869	rs7204324	A	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr16	58757668	rs14221	A	C	9300.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	58757683	rs257636	A	G	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	58767916	rs3217426	AGT	A	2975.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:3,122:0.98:125
chr16	60393292	rs142375595	C	CG	2844.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr16	60393312	rs114596708	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:49,77:0.61:126
chr16	60393404	rs2407146	T	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chr16	61687701	rs16963768	C	T	2221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.314;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:272,131:0.33:403
chr16	61689269	rs8054635	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=1.802;SOR=0.139;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr16	61747669	rs12446623	T	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.68;ReadPosRankSum=-2.074;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	61747933	rs115548634	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:114,76:0.40:190
chr16	65016240	rs55924658	C	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr16	65016285	rs35212	C	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr16	65025658	rs35196	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	65025849	rs35194	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr16	65038826	rs74026219	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,50:0.38:133
chr16	65087742	rs9928837	G	A	9910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-0.310;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:227,469:0.67:696
chr16	65839631	.	TCTC	T	2158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=7.682;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.997;QD=22.72;ReadPosRankSum=0.351;SOR=1.538;set=HC	GT:AD:AF:DP	0/1:32,63:0.66:95
chr16	66420885	rs1130844	C	T	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	66424235	rs2304527	T	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr16	66432303	rs113303884	GACCACCCC	G	1785.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:102,51:0.33:153
chr16	66432423	rs1049970	TC	CT	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;JOINED;set=Intersection	GT:AD:AF:DP	0/1:232,106:0.31:338
chr16	66434571	rs6499082	G	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr16	66437131	rs1063438	A	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr16	66503380	rs73596603	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.304;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr16	66511627	rs11075636	A	G	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.282;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:63,110:0.64:173
chr16	66527192	rs58468753	G	A	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:76,114:0.60:190
chr16	66545982	rs16956600	C	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr16	66571031	.	T	C	1589.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr16	66583028	rs3743713	C	T	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.458;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:315,127:0.29:442
chr16	66584002	rs3743716	T	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:94,136:0.59:230
chr16	66600479	rs7193473	G	A	10895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=0.854;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:243,495:0.67:738
chr16	66601057	rs377761335	CT	C	1069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=6.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.049;SOR=1.568;set=HC	GT:AD:AF:DP	0/1:49,87:0.64:136
chr16	66613525	rs11553598	G	A	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:109,172:0.61:281
chr16	66613841	rs2290183	G	C	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:79,167:0.68:246
chr16	66614008	rs2290182	T	C	8874.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:206,422:0.67:628
chr16	66621086	rs146529324	GCTT	G	3176.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:63,82:0.57:145
chr16	66757487	.	G	GT	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=4.645;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.664;QD=1.76;ReadPosRankSum=-0.841;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:89,35:0.28:124
chr16	66759682	rs2305311	C	A	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	66759976	rs2305310	C	T	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	66762847	rs12599882	T	C	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	66762860	rs58727720	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	66776657	rs4407052	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	66785117	.	G	C	1058.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr16	66785604	rs9929143	C	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr16	66811035	rs71671589	GA	G	501.80	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:5,31:0.86:36
chr16	66812653	rs363161	T	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	66812797	rs363162	C	T	16737.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:2,659:1.00:661
chr16	66844736	rs138689562	AC	A	1979.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	66847658	rs16957014	A	T	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	66851224	rs9889170	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	66852579	.	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.518;QD=1.80;ReadPosRankSum=-1.546;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr16	66857338	rs144225174	GAC	G	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr16	66861470	rs11372346	C	CA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-0.410;QD=13.60;ReadPosRankSum=0.357;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr16	66861836	rs7195853	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr16	66885652	rs151460	A	G	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	66886450	rs149116525	GAAGA	G	476.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.147;QD=19.07;ReadPosRankSum=-0.654;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:2,23:0.92:25
chr16	66886479	rs368431732	GAAAAGAAAAGAAAAAA	G	2009.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=43.69;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	66886581	rs7187695	A	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	66918076	rs11455501	C	CA	131.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.191;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	66920452	rs11861556	G	A	9508.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	66944180	rs34621310	C	T	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.329;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:402,134:0.25:536
chr16	66946894	rs150509525	CGT	C	1413.73	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:197,83:0.30:280
chr16	66947363	rs8048423	G	A	53783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=1297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=41.82;ReadPosRankSum=0.733;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:2,1284:1.00:1286
chr16	66947383	rs3848284	C	G	51206.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=1187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=43.47;ReadPosRankSum=2.008;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:2,1176:1.00:1178
chr16	66951783	rs2271025	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	66958581	.	AAAT	A	1446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=62.98;MQRankSum=-5.866;QD=11.13;ReadPosRankSum=0.754;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:81,49:0.38:130
chr16	66958602	.	T	TAATAATAATAATAAC	2262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=64.01;MQRankSum=5.578;QD=12.30;ReadPosRankSum=2.360;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:79,105:0.57:184
chr16	66977094	rs2241409	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	67000267	rs67674179	G	A	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:102,137:0.57:239
chr16	67006899	rs8059252	A	G	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:142,218:0.61:360
chr16	67034983	.	TGG	T	965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.684;QD=24.76;ReadPosRankSum=0.407;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	67035519	rs11860308	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	67037054	rs61744399	A	C	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	67039380	rs78240458	C	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr16	67040335	rs3848290	G	A	7668.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	67063499	rs8061800	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr16	67063612	rs79560117	G	T	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:100,251:0.72:351
chr16	67116355	rs79440925	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr16	67165281	rs75001741	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr16	67174361	rs77081283	CA	TG	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr16	67178083	rs10717954	AG	A	1018.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.443;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:73,37:0.34:110
chr16	67178973	rs61023332	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	67180113	rs76171566	G	C	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr16	67180171	rs7184692	T	C	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	67197138	rs1106304	C	T	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:384,218:0.36:602
chr16	67197776	rs5817616	C	CG,CGGG	1586.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/2:0.72,0.18:68
chr16	67198991	.	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.851;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr16	67203835	.	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=7.336;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.684;QD=1.95;ReadPosRankSum=-0.601;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr16	67207933	rs2233455	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:199,118:0.37:317
chr16	67212032	rs143977756	GAGCCCCGCCCCTCGCCCGA	G	3122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.846;QD=6.76;ReadPosRankSum=-0.050;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:360,102:0.22:462
chr16	67212812	rs56149159	A	AC	2315.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:189,86:0.31:275
chr16	67213923	rs13339140	C	T	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:329,140:0.30:469
chr16	67214346	rs7186508	C	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-1.195;QD=3.95;ReadPosRankSum=-2.888;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr16	67218375	rs16957210	T	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:142,74:0.34:216
chr16	67218761	rs73585101	G	A	5082.77	.	AC=1;AF=0.500;AN=2;DB;DP=983;set=Intersection	GT:AD:AF:DP	0/1:663,311:0.32:974
chr16	67219107	rs9939768	G	C	5852.77	.	AC=1;AF=0.500;AN=2;DB;DP=1132;set=Intersection	GT:AD:AF:DP	0/1:751,357:0.32:1108
chr16	67220457	rs868213	A	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr16	67221050	rs9924876	A	G	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr16	67222676	rs13334403	G	A	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:102,53:0.34:155
chr16	67228128	rs3730397	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr16	67229793	.	ACAG	A	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=2.568;QD=1.11;ReadPosRankSum=0.579;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:418,80:0.16:498
chr16	67233266	rs12923138	A	C	11044.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr16	67233697	rs8058614	G	A	4663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.209;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:506,274:0.35:780
chr16	67234134	rs8058861	A	G	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.392;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:192,64:0.25:256
chr16	67234741	rs73586989	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:169,66:0.28:235
chr16	67237343	rs13336793	A	G	4637.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:527,278:0.35:805
chr16	67241427	rs12051249	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	67241450	rs73588903	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr16	67241754	rs56234712	T	C	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-1.145;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:254,137:0.35:391
chr16	67241930	rs34595673	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.328;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:159,57:0.26:216
chr16	67262775	rs1140380	C	T	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:300,145:0.33:445
chr16	67264629	rs6499117	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.028;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:104,31:0.23:135
chr16	67265360	rs6499118	C	A	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.201;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:446,209:0.32:655
chr16	67271106	rs13330273	T	C	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:359,146:0.29:505
chr16	67271858	rs3852700	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	67272273	rs73589001	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:287,149:0.34:436
chr16	67289841	rs9940665	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr16	67293964	rs8049096	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr16	67304531	rs73591135	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr16	67304915	rs1061356	A	G	7594.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:837,424:0.34:1261
chr16	67304990	rs1061357	C	T	6272.77	.	AC=1;AF=0.500;AN=2;DB;DP=1194;set=Intersection	GT:AD:AF:DP	0/1:805,375:0.32:1180
chr16	67315123	rs57651895	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.936;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=10.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=2.022;SOR=2.013;set=HC	GT:AD:AF:DP	0/1:76,30:0.28:106
chr16	67315128	rs78476762	C	T	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.020;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr16	67316234	rs11860295	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:189,83:0.31:272
chr16	67316266	rs13331362	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:191,94:0.33:285
chr16	67316600	rs7200919	G	A	11809.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr16	67318242	rs8044843	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr16	67320223	rs3868142	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:203,91:0.31:294
chr16	67321983	rs116110038	T	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-1.463;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:76,33:0.30:109
chr16	67324827	rs8053912	A	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:143,90:0.39:233
chr16	67324957	rs27860	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	67328453	rs3868143	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr16	67329327	rs8047484	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr16	67338497	rs10852437	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr16	67384060	rs35595978	C	CT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.077;QD=4.45;ReadPosRankSum=-0.359;SOR=1.915;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr16	67397580	rs9922085	G	C	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.864;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:282,108:0.28:390
chr16	67397657	rs9921946	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:128,58:0.31:186
chr16	67409180	rs8052655	G	A	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:378,195:0.34:573
chr16	67410583	rs7205526	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,58:0.32:180
chr16	67410697	rs7184290	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:116,61:0.34:177
chr16	67418860	rs8058996	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.138;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:97,42:0.30:139
chr16	67419025	rs8059226	G	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.343;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	67423939	rs1053612	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr16	67429595	rs7191318	C	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr16	67440389	rs8059722	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr16	67441762	rs874469	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:175,100:0.36:275
chr16	67469969	rs5480	G	A	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:262,152:0.37:414
chr16	67470327	rs45574737	A	G	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.199;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:88,52:0.37:140
chr16	67472376	rs145078546	GCACA	G,GCACACA	3169.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=130;set=Intersection	GT:AF:DP	1/2:0.27,0.69:111
chr16	67679348	rs73597578	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr16	67679879	rs73597580	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.225;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:230,82:0.26:312
chr16	67680956	rs60990105	T	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr16	67682234	rs73597581	G	A	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.755;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=4.154;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:252,160:0.39:412
chr16	67683564	rs76841123	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr16	67683626	rs73597582	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr16	67690012	rs202014858	G	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.823;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:73,35:0.32:108
chr16	67691645	rs67114979	G	T	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:198,109:0.36:307
chr16	67691668	rs6979	A	G	8733.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr16	67691876	.	G	A	10028.77	.	AC=1;AF=0.500;AN=2;DP=768;set=Intersection	GT:AD:AF:DP	0/1:270,464:0.63:734
chr16	67692486	rs72549181	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr16	67693437	rs8058187	T	C	3611.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:86,162:0.65:248
chr16	67699948	rs7187476	T	C	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:262,128:0.33:390
chr16	67805993	rs35741053	C	CA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=6.592;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.415;QD=1.90;ReadPosRankSum=2.406;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr16	67841129	rs7199443	T	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.485;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:152,61:0.29:213
chr16	67854841	rs200933447	C	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,71:0.61:116
chr16	67861134	rs2292316	C	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:125,64:0.34:189
chr16	67863451	rs3743733	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	67902326	rs2271294	A	T	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:290,134:0.32:424
chr16	67911517	rs8060686	T	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:196,102:0.34:298
chr16	67920049	rs73594554	G	A	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:254,146:0.36:400
chr16	67964361	rs11552953	G	A	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:424,220:0.34:644
chr16	67969930	rs20549	A	G	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=2.489;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:159,51:0.24:210
chr16	67985706	rs2292318	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr16	67997745	.	A	ACGGGGCCTGCAGAGGGG	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=5.213;QD=4.50;ReadPosRankSum=0.968;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:130,40:0.24:170
chr16	67997920	rs3785100	T	C	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:259,169:0.39:428
chr16	68010782	rs74858163	C	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr16	68011654	rs57136942	G	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:90,199:0.69:289
chr16	68013471	rs255049	T	C	32.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr16	68024995	rs255052	G	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.780;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr16	68025801	rs255051	G	C	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	68057096	rs237831	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	68072161	rs150058704	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr16	68100461	rs2285912	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	68264209	rs62637560	C	G	3393.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:100,163:0.62:263
chr16	68325665	.	G	GGTGTGTGTGT,GGTGTGT	1699.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=126;set=Intersection	GT:AF:DP	1/1:0.90:39
chr16	68344696	rs3803650	C	T	17145.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:1,650:1.00:651
chr16	68344945	rs3743741	G	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	68345036	rs3743742	G	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	68356187	rs7203220	A	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	68356419	rs4783618	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	68363181	rs1111571	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	68382447	rs2863975	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	68387373	rs1562479	C	T	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	68387496	rs1868159	A	C	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	68389772	rs1131933	C	T	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	68391189	rs7192234	C	G	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	68395094	rs2279539	G	A	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	68397530	rs3826167	T	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	68397909	rs1465470	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	68397916	rs1465469	T	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	68398924	rs1868158	C	T	11967.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr16	68573945	rs1182968	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	68591156	rs1728784	T	A	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	68591230	rs1728785	A	C	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	68591350	rs1645929	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr16	68591386	rs11859322	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	68598007	rs1177648	A	G	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:386,177:0.31:563
chr16	68598744	.	A	ATTT	79	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=12;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=79;QD=28.3333333333;SC=CAGTAGACAGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=68598752;WS=68598734;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr16	68710165	rs3118229	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	68712217	rs2296410	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	68712730	rs8049247	C	A	14284.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr16	68713730	rs2296409	G	A	8845.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=3.774;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=25.94;ReadPosRankSum=1.524;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:1,340:1.00:341
chr16	68713823	rs2296408	C	A	13735.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,532:1.00:533
chr16	68716179	rs1886697	T	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	68718560	rs11860187	G	A	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:118,199:0.63:317
chr16	68718750	rs2281850	A	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	68721340	rs2296406	G	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	68721470	rs2296405	T	C	15362.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr16	68725783	rs2274239	G	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	68729112	rs8060790	A	G	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	68732062	rs189179742	C	T	6827.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:167,307:0.65:474
chr16	68771372	rs3743674	C	T	4423.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.035;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.190;QD=24.99;ReadPosRankSum=1.165;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:1,176:0.99:177
chr16	68771424	.	A	AGCCCCGTGCCCCAGCCCTGC	5315.73	.	AC=2;AF=1.00;AN=2;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=47.04;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	68771547	rs3743675	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	68847576	rs9935130	A	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=0.144;QD=14.31;ReadPosRankSum=-1.585;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr16	68847584	rs8056633	T	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=38.93;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	68856041	rs33935154	G	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:173,108:0.38:281
chr16	68857441	rs1801552	T	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	68877703	rs16958412	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr16	68936169	rs74342619	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr16	68953193	rs41433348	A	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:37,8:0.18:45
chr16	68961901	rs61730958	C	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:69,89:0.56:158
chr16	69006988	rs79446336	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.626;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:68,33:0.33:101
chr16	69007846	rs3743677	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr16	69056919	rs16942919	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr16	69143481	rs2232227	T	G	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.963;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:386,174:0.31:560
chr16	69149097	rs2232232	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:173,78:0.31:251
chr16	69166366	.	G	GC	57	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=6;HapScore=2;MGOF=66;MMLQ=24;MQ=59.83;NF=4;NR=0;PP=57;QD=20.5;SC=AGCCTCCCGTGCCCCCCGCCC;SbPval=1.0;Source=Platypus;TC=17;TCF=13;TCR=4;TR=4;WE=69166374;WS=69166356;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr16	69188395	rs77012617	C	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:94,58:0.38:152
chr16	69191180	rs142362164	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr16	69221510	rs10650	C	G	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.374;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:154,91:0.37:245
chr16	69279773	rs79966240	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr16	69304242	rs75710579	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.223;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr16	69317807	rs12325242	G	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr16	69334880	rs34703750	C	CA	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.707;QD=1.45;ReadPosRankSum=-0.076;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:82,23:0.22:105
chr16	69349994	rs80035728	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:153,88:0.37:241
chr16	69350035	rs3817030	A	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:122,68:0.36:190
chr16	69350069	rs12708896	C	G	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:94,62:0.40:156
chr16	69354963	rs1127231	A	G	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.819;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:244,93:0.28:337
chr16	69355229	.	GT	TT	64	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.4997,0.5000;HP=10;HapScore=4;MGOF=5;MMLQ=24;MQ=60.63;NF=0,2;NR=4,4;PP=20,64;QD=8.0;SC=GGGATGTTCGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=4,6;WE=69355237;WS=69355219;set=Platypus	GT:AD:AF:DP	0/1:14,6:0.30:20
chr16	69355229	.	GT	GTT	64	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.4997,0.5000;HP=10;HapScore=4;MGOF=5;MMLQ=24;MQ=60.63;NF=0,2;NR=4,4;PP=20,64;QD=8.0;SC=GGGATGTTCGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=4,6;WE=69355237;WS=69355219;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr16	69356695	rs11075714	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr16	69358036	rs78701173	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.510;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr16	69363734	rs2242414	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.166;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr16	69364030	rs3852691	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:144,86:0.37:230
chr16	69364437	rs184453457	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.516;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr16	69364443	rs8057004	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.722;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr16	69365121	.	A	AG	509	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=12;HapScore=4;MGOF=4;MMLQ=19;MQ=59.34;NF=1;NR=7;PP=509;QD=65.75;SC=GAGGCCGGGGAGGGGGGGGCG;SbPval=0.56;Source=Platypus;TC=20;TCF=2;TCR=18;TR=8;WE=69365131;WS=69365111;set=Platypus	GT:AD:AF:DP	1/0:12,8:0.40:20
chr16	69365123	rs9928658	G	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	69372927	rs3759979	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr16	69373414	rs11542583	T	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,46:0.32:146
chr16	69375658	rs8053850	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr16	69381769	rs16958777	C	T	3388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.691;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:487,212:0.30:699
chr16	69390702	rs372147187	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.268;QD=2.16;ReadPosRankSum=1.468;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr16	69395141	.	GA	G	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.610;QD=5.52;ReadPosRankSum=-0.254;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr16	69458779	rs1619397	G	A	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:111,187:0.63:298
chr16	69492973	rs34120910	A	AT	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.663;QD=11.26;ReadPosRankSum=0.660;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr16	69599670	.	T	TC	2297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.984;QD=11.97;ReadPosRankSum=0.951;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:92,100:0.52:192
chr16	69599803	rs8048032	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	69602281	rs62052822	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.31;MQRankSum=1.732;QD=12.58;ReadPosRankSum=-0.501;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	69602283	rs62052823	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.31;QD=30.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	69704122	rs72523664	C	CTG	1921.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=43.68;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	69704204	rs3217435	CT	C	222.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	69711311	rs3743673	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.489;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr16	69745145	rs1800566	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr16	69752175	rs147731382	G	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr16	69752464	rs689452	C	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	69760286	rs689460	C	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:325,113:0.26:438
chr16	69782385	rs60816774	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	69873992	rs2291959	T	G	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	69876164	rs9940315	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	69905567	rs74029725	T	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr16	69942608	rs5817677	AG	A	9990.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	69942824	rs144287207	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr16	69959223	rs2270838	G	A	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	69963355	rs1566452	G	A	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	69965024	rs2270840	A	T	8142.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	69965280	rs78727023	C	T	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-1.101;SOR=1.271;set=HC	GT:AD:AF:DP	0/1:33,60:0.65:93
chr16	69965280	.	CT	TG	672	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=27;NR=11;PP=672;QD=19.0912598648;SC=CTCTAGGAAGCTAGTTTTCAT;SbPval=0.82;Source=Platypus;TC=65;TCF=41;TCR=24;TR=38;WE=69965289;WS=69965270;set=Platypus	GT:AD:AF:DP	0/1:27,38:0.58:65
chr16	69965281	rs8052727	T	G	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.03;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	69965592	rs2291961	A	G	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	69967093	rs2102066	G	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	69967732	rs8047818	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	69967897	rs2270841	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	69970000	rs2270842	T	G	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr16	69970329	rs1983016	A	G	8997.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	69970371	rs904802	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:113,45:0.28:158
chr16	69973044	rs58342753	C	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:143,75:0.34:218
chr16	69973158	rs183526881	G	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr16	69973622	rs10712484	GC	G	6293.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	69973655	rs4985461	C	G	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:112,185:0.62:297
chr16	69988315	rs145695799	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr16	69988373	rs2549097	T	C	6889.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.85;MQRankSum=-1.887;QD=25.61;ReadPosRankSum=-0.761;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,267:0.99:269
chr16	70055746	rs199727301	A	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.03;MQRankSum=-0.047;QD=6.96;ReadPosRankSum=1.158;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr16	70065013	rs61671039	A	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr16	70099593	rs889377	T	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.49;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	70099909	rs7201853	C	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr16	70100219	rs870977	C	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.408;QD=22.05;ReadPosRankSum=1.121;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	70100229	rs870976	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-0.802;QD=23.59;ReadPosRankSum=0.458;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr16	70154480	rs200469748	A	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-16.911;QD=0.72;ReadPosRankSum=-1.326;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:360,65:0.15:425
chr16	70154486	rs60114701	G	C	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=4.565;QD=4.08;ReadPosRankSum=2.780;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:301,113:0.27:414
chr16	70161263	rs2549532	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.095;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=33.665;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-8.080;QD=2.81;ReadPosRankSum=-2.335;SOR=3.088;set=HC	GT:AD:AF:DP	0/1:109,26:0.19:135
chr16	70163691	rs4985506	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:563,112:0.17:675
chr16	70163825	rs4985403	G	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-10.875;QD=3.51;ReadPosRankSum=1.786;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr16	70164248	rs7206450	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr16	70164334	rs10852462	A	G	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=1.413;QD=4.56;ReadPosRankSum=-2.728;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:199,80:0.29:279
chr16	70165914	rs2113175	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr16	70170004	rs8045700	C	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr16	70170016	rs8045569	A	G	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=45.85;MQRankSum=-0.749;QD=16.66;ReadPosRankSum=0.283;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr16	70170222	rs59034887	G	T	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:382,214:0.36:596
chr16	70172890	rs142218067	C	T	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=45.97;MQRankSum=-2.539;QD=9.14;ReadPosRankSum=-3.304;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:78,65:0.45:143
chr16	70176076	rs2549125	G	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-11.112;QD=4.52;ReadPosRankSum=-0.082;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:118,46:0.28:164
chr16	70176321	rs113493832	CT	C	2249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=3.779;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-0.343;QD=5.33;ReadPosRankSum=1.080;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:207,215:0.51:422
chr16	70177378	rs374787212	G	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:214,90:0.30:304
chr16	70177577	rs2303198	G	A	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:190,141:0.43:331
chr16	70177618	rs7191901	G	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,83:0.61:136
chr16	70177648	rs2303200	G	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	70178401	rs7192962	A	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.92;MQRankSum=-0.615;QD=11.75;ReadPosRankSum=0.448;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	70178440	rs201716692	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.92;MQRankSum=0.319;QD=2.56;ReadPosRankSum=0.319;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr16	70181537	rs145995386	C	T	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-1.061;QD=5.20;ReadPosRankSum=0.894;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:101,50:0.33:151
chr16	70182325	rs55843501	T	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr16	70182375	rs62050977	T	C	2473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-1.108;QD=6.34;ReadPosRankSum=-2.662;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:309,81:0.21:390
chr16	70182390	rs62050978	T	G	2621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-0.715;QD=6.01;ReadPosRankSum=-1.266;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:341,95:0.22:436
chr16	70182488	rs9927748	C	T	1183.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.590;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.887;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.773;QD=4.40;ReadPosRankSum=-0.028;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:192,77:0.29:269
chr16	70182489	rs145754705	ACTTCCCTTCC	A	1415.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.289;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=9.416;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=3.360;QD=7.45;ReadPosRankSum=3.763;SOR=1.423;set=HC	GT:AD:AF:DP	0/1:144,46:0.24:190
chr16	70187164	rs2287979	G	A	2026.88	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:8,77:0.91:85
chr16	70190401	rs6499302	C	T	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:276,191:0.41:467
chr16	70191029	rs4985509	T	G	12519.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr16	70191118	rs4985405	A	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr16	70191161	rs11647087	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr16	70211226	rs150357848	T	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.39;MQRankSum=-10.196;QD=2.72;ReadPosRankSum=-2.409;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:181,53:0.23:234
chr16	70211290	rs76842247	T	C	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.55;MQRankSum=-13.888;QD=3.00;ReadPosRankSum=2.679;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:324,105:0.24:429
chr16	70237550	rs9673623	G	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr16	70285102	rs11859730	T	G	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr16	70285227	rs138696758	G	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr16	70285492	.	G	C	125.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	70285901	rs4985407	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	70287177	rs4081753	A	G	15060.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr16	70287574	rs8045571	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	70288732	rs7205918	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr16	70299401	rs7190921	G	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr16	70299420	rs7192000	T	C	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr16	70302333	rs16970302	T	G	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:130,248:0.66:378
chr16	70303418	rs7193598	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr16	70303580	rs2070203	G	A	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:272,161:0.37:433
chr16	70303659	rs11537667	C	T	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:146,212:0.59:358
chr16	70305681	rs74024185	T	C	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,62:0.71:87
chr16	70329025	rs7189535	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr16	70333300	rs74024193	G	T	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:84,149:0.64:233
chr16	70348591	rs199580957	A	ATATC	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.622;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-1.112;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr16	70348599	rs149821008	C	CTA	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.142;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr16	70350114	rs35388962	GT	G	603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.422;QD=4.37;ReadPosRankSum=-0.929;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:75,63:0.46:138
chr16	70351429	rs7195567	C	G	2894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.397;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:100,143:0.59:243
chr16	70359606	rs74024199	T	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr16	70363045	rs60523557	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr16	70363125	.	CA	C	440.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=3.020;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,47:0.75:63
chr16	70363181	rs11324118	TG	T	3810.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:60,133:0.69:193
chr16	70363670	rs74024200	A	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr16	70365855	rs58592676	T	G	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:69,160:0.70:229
chr16	70367043	rs74024202	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.91;MQRankSum=-0.349;QD=17.71;ReadPosRankSum=1.876;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	70381966	rs57177608	C	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr16	70384626	rs56037787	A	T	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr16	70400854	rs58055772	T	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=-1.160;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr16	70400857	rs8058224	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	70422263	rs7199655	A	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr16	70429103	rs57422630	A	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:52,109:0.68:161
chr16	70496969	rs17885314	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr16	70497235	rs17879135	A	G	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:83,98:0.54:181
chr16	70497248	rs17883115	A	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr16	70497581	rs60470914	C	A	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:146,166:0.53:312
chr16	70497768	rs60237114	T	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr16	70500070	rs17880268	T	C	6352.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:349,321:0.48:670
chr16	70500969	rs17882726	C	T	3186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.597;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:217,171:0.44:388
chr16	70501465	rs17879684	C	T	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr16	70501521	rs17879964	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr16	70502610	rs12446395	C	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	70504885	rs17881219	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr16	70505024	rs370943475	G	A	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-1.302;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:143,93:0.39:236
chr16	70506557	rs17883780	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr16	70506907	rs7192865	T	C	13500.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:2,529:1.00:531
chr16	70512143	rs8049316	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr16	70512191	rs8049046	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr16	70513372	rs11860625	G	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr16	70514828	rs7919	A	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	70515355	rs11054	C	T	12551.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr16	70515600	rs6416698	T	G	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	70516228	rs9933510	C	G	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	70516478	rs74026053	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	70517641	rs34329336	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,102:0.50:204
chr16	70517769	.	C	T	3358.77	.	AC=1;AF=0.500;AN=2;DP=366;set=Intersection	GT:AD:AF:DP	0/1:190,170:0.47:360
chr16	70524216	rs74026056	G	C	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:238,197:0.45:435
chr16	70530359	rs2303793	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr16	70530384	rs57301833	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr16	70531754	rs2303791	T	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	70542721	rs8053883	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr16	70542816	rs8055338	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr16	70543111	rs16970240	T	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr16	70543645	rs74026072	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.13;ReadPosRankSum=1.282;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	70543933	rs16970243	G	C	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr16	70546396	rs7193228	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr16	70548297	rs3931036	G	A	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	70549950	rs11862417	C	T	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=1.018;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:197,143:0.42:340
chr16	70549958	rs7185462	T	C	10038.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.35;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	70551469	rs8051618	T	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-1.903;QD=13.00;ReadPosRankSum=-0.135;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr16	70553382	rs7204583	G	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	70557213	rs59149508	C	G	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:64,99:0.61:163
chr16	70557258	rs16970260	A	G	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:204,151:0.43:355
chr16	70563181	rs8047593	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr16	70563202	rs74026076	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr16	70599171	rs74026080	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:126,120:0.49:246
chr16	70599218	rs74026081	A	C	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:156,150:0.49:306
chr16	70601227	rs28613466	G	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr16	70603220	rs4985534	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	70604927	rs8057766	G	A	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:203,190:0.48:393
chr16	70680744	rs3813904	G	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	70690989	rs8046424	G	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	70693872	rs3214847	C	CT	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=7.170;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.415;QD=3.72;ReadPosRankSum=0.811;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:141,68:0.33:209
chr16	70693945	rs7206509	G	C	5611.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:265,279:0.51:544
chr16	70695288	rs58442115	AG	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=24.362;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.556;QD=4.52;ReadPosRankSum=-2.758;SOR=1.834;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr16	70698535	rs139618050	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr16	70708093	rs67662127	CAGTCTCAACAGCTATAGT	C	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	70710943	.	G	GC	3457.73	.	AC=1;AF=0.500;AN=2;DP=449;set=Intersection	GT:AD:AF:DP	0/1:252,173:0.41:425
chr16	70722103	rs11864186	G	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr16	70722133	rs147952023	TCCGTCATGGCGGGC	T	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	70726795	rs2278983	C	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:122,120:0.50:242
chr16	70726926	rs373449211	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr16	70731246	.	A	G	269.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr16	70732483	rs7201952	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr16	70732761	rs9673700	G	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr16	70789074	rs115213258	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr16	70789322	rs78594930	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr16	70790057	rs77757308	T	C	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,67:0.52:128
chr16	70796416	rs16970522	T	A	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:214,184:0.46:398
chr16	70800345	rs16970525	G	C	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:198,172:0.46:370
chr16	70814787	rs16970545	G	A	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:299,151:0.34:450
chr16	70814845	rs74024453	G	A	6136.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:151,292:0.66:443
chr16	70814885	rs78433041	T	C	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:86,175:0.67:261
chr16	70815630	rs77373379	T	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	70816893	rs1875941	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	70817440	rs144822178	C	T	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:283,125:0.31:408
chr16	70818733	rs60817340	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.028;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr16	70820061	rs75816871	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	70867056	rs150445431	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-2.340;QD=2.10;ReadPosRankSum=-0.957;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr16	70884416	rs374224023	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=50.88;MQRankSum=-0.143;QD=9.73;ReadPosRankSum=0.291;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr16	70888912	rs117642227	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-1.383;QD=4.86;ReadPosRankSum=-0.324;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	70899378	rs117694048	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.81;MQRankSum=-4.671;QD=5.83;ReadPosRankSum=-0.327;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr16	70913651	rs116891635	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.718;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=1.791;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr16	70917785	rs74706348	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:59,19:0.24:78
chr16	70934892	rs4985435	T	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr16	70934974	rs12102425	T	C	3540.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:224,190:0.46:414
chr16	70935224	rs75445533	A	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-2.655;QD=4.86;ReadPosRankSum=-1.915;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	70954829	rs201875517	G	A	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=1.758;QD=3.15;ReadPosRankSum=0.960;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:266,80:0.23:346
chr16	70954915	rs1798531	G	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.04;QD=31.25;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	70972595	rs79004160	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:157,122:0.44:279
chr16	70972784	rs1615602	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-5.151;QD=1.67;ReadPosRankSum=0.031;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr16	70993881	.	CT	GA	130	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=44.94;NF=0;NR=3;PP=130;QD=61.1559582874;SC=TAGTGTACGACTAGGCCCTTT;SbPval=1.0;Source=Platypus;TC=17;TCF=4;TCR=13;TR=3;WE=70993890;WS=70993871;set=Platypus	GT:AD:AF:DP	0/1:14,3:0.18:17
chr16	70995845	rs138353494	C	T	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	70996115	rs77561642	GA	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=-4.383;QD=2.20;ReadPosRankSum=2.847;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr16	70998557	rs141145866	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.596;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr16	71004735	rs76424707	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-0.840;QD=9.30;ReadPosRankSum=-1.211;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr16	71008389	rs150780870	A	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-3.416;QD=2.84;ReadPosRankSum=-1.354;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr16	71015329	rs112779887	G	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-1.188;QD=14.26;ReadPosRankSum=1.123;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	71025394	rs149427312	C	T	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.702;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=9.834;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-5.589;QD=9.23;ReadPosRankSum=-1.005;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:95,93:0.49:188
chr16	71025835	.	C	G	339.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr16	71054333	.	T	TTG	56	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=42.6;NF=0;NR=2;PP=56;QD=31.5;SC=TTCTTTTTCTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=15;TCF=5;TCR=10;TR=2;WE=71054341;WS=71054323;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr16	71098746	.	G	T	852.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr16	71101240	rs144802912	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:187,82:0.30:269
chr16	71103148	rs75792522	G	A	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=24.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	71103538	rs6499429	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr16	71109662	rs141412506	C	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	71163693	rs150028416	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-0.341;QD=1.81;ReadPosRankSum=-1.722;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr16	71163744	rs138029722	T	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.30;MQRankSum=-0.946;QD=15.67;ReadPosRankSum=0.908;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	71218926	rs3785347	T	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	71220880	rs12927616	T	C	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	71237587	rs1895528	T	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.109;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:59,32:0.35:91
chr16	71237702	rs764600	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr16	71264399	rs3743954	G	C	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:259,124:0.32:383
chr16	71264523	rs12449210	T	A	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=1290;set=Intersection	GT:AD:AF:DP	0/1:899,382:0.30:1281
chr16	71317567	rs16970857	A	G	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,102:0.64:159
chr16	71318577	rs3803704	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr16	71319539	rs3826247	C	T	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.052;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:234,69:0.23:303
chr16	71319646	rs3096380	G	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	71319900	rs9928675	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr16	71406024	rs7203012	C	T	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	71411446	rs12445308	G	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	71416431	rs12919213	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	71417783	rs35885273	C	T	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	71418562	rs367842304	CCACA	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	71418572	rs111526151	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	71419595	rs4327058	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	71423487	rs34538886	C	T	5458.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	71464943	rs7195767	A	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:16,59:0.79:75
chr16	71465613	rs7203200	T	G	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	71466088	rs4620964	A	G	22515.77	.	AC=2;AF=1.00;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	1/1:1,878:1.00:879
chr16	71483497	rs72795864	C	G	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:262,167:0.39:429
chr16	71484621	rs66920642	CA	C	991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.277;QD=11.40;ReadPosRankSum=-1.000;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:14,73:0.84:87
chr16	71487206	rs2070832	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	71488175	rs34380814	C	T	4152.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:91,193:0.68:284
chr16	71500810	rs116701692	C	T	217.31	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr16	71501076	rs56996503	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr16	71509207	rs75731908	A	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.075;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:145,47:0.24:192
chr16	71509685	rs2288489	C	G	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	71602665	rs16973331	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr16	71603912	rs172650	C	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	71606410	rs16973337	T	C	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.351;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:36,82:0.69:118
chr16	71607384	rs2432520	T	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	71609856	rs78302875	C	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.466;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:73,36:0.33:109
chr16	71610276	rs74344827	G	A	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:121,171:0.59:292
chr16	71660115	rs4788820	G	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.49;SOR=2.340;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	71660404	rs61753635	G	A	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:53,112:0.68:165
chr16	71668800	rs7206470	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	71678679	rs7204608	G	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr16	71682796	rs61733125	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr16	71682830	rs61733124	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr16	71689406	.	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.480;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr16	71690657	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=5.146;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.279;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr16	71701248	rs1423983	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	71703436	rs2032918	T	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	71710646	rs115951872	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr16	71715915	rs11439127	G	GA	214.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=19.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	71718366	rs7195059	C	T	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	71736702	rs10626314	G	GTATTTT	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	71757939	rs7201649	C	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	71772795	rs904764	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr16	71773190	rs904763	G	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:112,54:0.33:166
chr16	71784000	rs2270829	A	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	71784348	rs149580087	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	71790166	rs8053186	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	71792190	rs11866559	G	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	71799347	rs12149092	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	71801834	rs182871380	C	T	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:158,284:0.64:442
chr16	71801958	rs7192956	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	71804956	rs9635524	C	G	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	71805160	rs4788443	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr16	71808507	.	G	GA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.000;QD=1.07;ReadPosRankSum=-0.016;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:129,31:0.19:160
chr16	71879868	rs4788563	A	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr16	71917058	rs2288029	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr16	71950892	rs7198082	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr16	71955426	rs56089063	C	CAT	1309.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr16	71961389	.	C	CAA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.822;QD=6.90;ReadPosRankSum=0.032;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	71963928	rs57754843	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr16	71964175	rs16973496	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr16	71977809	rs75867702	A	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr16	71986832	rs7204504	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr16	71986946	rs7204708	A	G	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:54,117:0.68:171
chr16	72007232	rs7197967	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:103,63:0.38:166
chr16	72007399	rs9925415	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:69,100:0.59:169
chr16	72010986	rs7188827	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-2.172;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr16	72011040	rs3929023	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr16	72011181	rs1559401	G	T	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:69,124:0.64:193
chr16	72011193	rs1559400	A	C	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,131:0.63:207
chr16	72011261	rs1559399	A	G	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:75,141:0.65:216
chr16	72011450	rs1559398	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.251;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	72011457	rs55908226	C	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.98;ReadPosRankSum=-0.973;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	72011461	.	T	TCC	193.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.434;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.90;ReadPosRankSum=-0.626;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	72011462	.	T	TC	193.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.902;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.90;ReadPosRankSum=-0.906;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	72012072	rs8053841	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr16	72012402	rs62053845	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.792;QD=12.25;ReadPosRankSum=2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	72012404	rs62053846	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.792;QD=12.25;ReadPosRankSum=2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	72012406	rs370830204	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.792;QD=12.25;ReadPosRankSum=2.189;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	72013797	rs7185272	G	C	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:105,206:0.66:311
chr16	72018099	rs12443563	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr16	72020134	rs12708923	T	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:111,236:0.68:347
chr16	72020294	rs4788590	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:53,77:0.59:130
chr16	72020323	rs4788591	A	G	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr16	72027194	rs9931901	A	G	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:71,152:0.68:223
chr16	72032231	rs16973585	T	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.217;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:131,43:0.25:174
chr16	72042682	rs3213422	A	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:107,51:0.32:158
chr16	72042825	rs3213423	T	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	72046268	rs1465457	C	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr16	72048332	rs3764310	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	72048632	rs8062895	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr16	72050826	.	A	AT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.568;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr16	72050885	rs11075914	G	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	72054984	rs1862752	G	T	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:67,113:0.63:180
chr16	72057282	rs2288002	A	G	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:50,93:0.65:143
chr16	72057333	.	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-1.813;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr16	72078043	rs763665	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr16	72088418	rs5469	T	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr16	72088461	rs5471	A	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.848;MLEAC=1;MLEAF=0.500;MQ=49.93;MQRankSum=1.157;QD=4.92;ReadPosRankSum=0.328;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:67,28:0.29:95
chr16	72088467	rs5472	A	G	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=1.441;QD=12.57;ReadPosRankSum=0.475;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:41,56:0.58:97
chr16	72088652	rs9927981	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:138,73:0.35:211
chr16	72088675	rs4788458	T	C	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:21,109:0.84:130
chr16	72089958	rs148260617	ATG	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.720;QD=1.07;ReadPosRankSum=0.138;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:101,17:0.14:118
chr16	72090450	rs371786946	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.54;MQRankSum=0.839;QD=16.46;ReadPosRankSum=-1.063;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr16	72107692	rs146688744	CGT	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.029;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr16	72110948	rs12646	C	G	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:149,147:0.50:296
chr16	72123992	rs7191127	G	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr16	72124157	rs7190995	A	G	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:101,158:0.61:259
chr16	72124219	rs7192730	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:46,74:0.62:120
chr16	72124495	rs2303285	A	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,114:0.68:168
chr16	72130203	rs1050361	C	G	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:78,154:0.66:232
chr16	72130815	rs1050362	C	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,66:0.75:88
chr16	72131740	rs34749771	ACT	A	2149.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr16	72132356	rs11862813	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	72132713	rs2072142	C	T	4129.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:125,196:0.61:321
chr16	72133211	rs2072141	G	A	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.560;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:31,49:0.61:80
chr16	72135014	rs1050363	T	C	6024.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:183,288:0.61:471
chr16	72135319	rs8043606	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr16	72137561	rs2240243	G	A	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:116,227:0.66:343
chr16	72139184	rs2074626	C	A	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:105,178:0.63:283
chr16	72139396	rs150617	T	C	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	72139537	rs42544	T	C	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,241:0.99:243
chr16	72142072	rs8051882	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr16	72142895	rs9926156	G	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr16	72146441	rs7940	C	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr16	72146570	rs6680	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,56:0.70:80
chr16	72156666	rs35909200	T	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr16	72156842	rs16973716	T	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr16	72157000	rs12935266	C	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	72158920	rs3812987	C	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr16	72158950	rs3812986	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr16	72162855	rs6499562	G	A	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr16	72174213	rs185701896	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr16	72205021	rs71391445	GA	G	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr16	72827758	rs699444	T	C	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	72832135	rs740178	T	A	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	72832618	.	T	TA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.44;ReadPosRankSum=-0.794;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	72845682	rs56991537	G	A	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr16	72991286	rs2157786	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,48:0.34:142
chr16	72991660	rs10852515	C	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:128,93:0.42:221
chr16	72991715	rs4788682	A	G	2104.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:146,110:0.43:256
chr16	72993831	rs7193297	A	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr16	73126858	rs7189194	T	G	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	73127515	rs79936602	G	A	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:97,179:0.65:276
chr16	73164795	rs34115176	A	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr16	73517250	rs147828241	A	AAG	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.563;QD=12.49;ReadPosRankSum=1.243;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr16	73520562	rs72799499	G	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr16	74320977	rs112297841	CA	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.663;QD=0.99;ReadPosRankSum=3.022;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:130,37:0.22:167
chr16	74366531	rs3743922	A	C	1977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-5.212;QD=6.05;ReadPosRankSum=1.945;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:208,119:0.36:327
chr16	74366672	rs3743923	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr16	74366694	.	A	G	51.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	74372914	.	GTT	G	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.80;ReadPosRankSum=-2.287;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	74394671	rs62055171	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:219,125:0.36:344
chr16	74394745	rs71391080	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:167,38:0.19:205
chr16	74425358	rs6564065	G	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr16	74425548	rs2868591	A	G	24230.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr16	74425558	.	C	CCCTCTTCCACCCTCT	1631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DP=660;ExcessHet=3.0103;FS=10.528;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-4.801;QD=3.13;ReadPosRankSum=3.036;SOR=1.823;set=HC	GT:AD:AF:DP	0/1:452,70:0.13:522
chr16	74425569	rs11641596	C	T	6187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=2.706;QD=9.65;ReadPosRankSum=0.451;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:343,298:0.46:641
chr16	74443401	.	T	C	917.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.52;QD=31.65;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	74443633	.	G	A	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DP=500;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=51.44;MQRankSum=-2.568;QD=3.97;ReadPosRankSum=-0.882;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:360,130:0.27:490
chr16	74447514	rs2650549	T	C	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-13.566;QD=2.23;ReadPosRankSum=-0.921;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:240,61:0.20:301
chr16	74451884	rs141132121	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.90;MQRankSum=1.492;QD=14.90;ReadPosRankSum=-0.948;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	74501856	rs6564117	C	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	74504097	rs12716764	G	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	74506524	rs13339376	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	74537591	rs4887772	C	T	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	74566090	rs200740673	AAAT	A	221.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;MQRankSum=0.000;QD=14.78;ReadPosRankSum=1.741;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr16	74660174	rs12933037	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	74664743	rs7193541	T	C	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	74664810	rs7188880	A	T	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	74664969	rs7193959	T	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	74666634	rs4072450	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	74670458	rs4888262	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	74695079	rs8058922	G	T	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	74706298	rs4888274	A	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	74709737	rs7184423	C	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	74712905	rs6564158	A	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	74750405	rs2301865	G	A	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	74753079	rs2074629	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	74760292	rs11295057	CT	C	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr16	74808425	rs929881	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	74908439	rs2870148	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	74920374	rs4888305	C	T	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	74921947	rs113657642	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	74926520	rs11149776	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	74927507	rs10718591	CA	C	1283.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:16,91:0.85:107
chr16	74943487	rs61734552	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	74943867	rs35006526	G	GTT	1531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.59;ReadPosRankSum=-0.916;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr16	74943890	rs12325318	A	G	1589.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.13;ReadPosRankSum=-0.902;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr16	74949759	rs9934255	A	T	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	74976486	rs16950763	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	74985516	rs3743921	T	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	74999617	rs4888324	A	C	14003.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.74;ReadPosRankSum=0.004;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:2,311:0.99:313
chr16	74999625	rs4887796	A	T	14098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.98;ReadPosRankSum=1.515;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:2,326:0.99:328
chr16	75034133	rs6564195	A	G	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	75148984	rs143145471	GC	G	996.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	75200378	rs9929570	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	75200416	rs7200789	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	75263661	rs7190458	G	A	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	75263974	rs6564241	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	75267676	rs4888361	A	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	75267994	rs112392504	GAC	G	261.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	75269124	rs16957552	T	C	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	75269267	rs3169330	A	G	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	75269325	rs16957558	C	A	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	75269534	rs3743613	C	T	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	75269958	rs10623347	C	CCA	1211.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	75270721	rs2278020	C	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr16	75276295	rs7195938	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	75277344	rs4888363	A	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr16	75277446	rs76709948	AAGAC	A	2073.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	75277480	rs4887810	C	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	75285164	rs1862738	A	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	75300708	rs11149811	C	G	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	75327700	rs6625	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	75327916	rs6624	A	G	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	75339131	rs7192981	T	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	75445906	rs247435	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	75538756	rs148883297	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.72;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	75538799	rs143481312	T	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	75563227	rs74027407	G	T	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr16	75565420	rs2641806	A	G	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	75579427	rs199898251	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.92;QD=29.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	75579470	rs200769675	T	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	75634014	rs7206481	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	75642673	rs59487462	G	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	75646508	rs56029288	T	C	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	75646685	rs3743598	G	T	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	75652408	rs7191044	A	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.102;QD=4.51;ReadPosRankSum=-3.165;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr16	75661803	rs6834	G	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	75665005	rs7187847	G	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	75665019	rs7189895	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	75667954	rs6564270	C	T	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	75681603	rs1865492	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	75681743	rs1865493	C	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	75703213	rs199883674	T	TA	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.133;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr16	75730037	rs5817959	T	TA	3069.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	75794714	.	C	CT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.039;QD=0.79;ReadPosRankSum=-1.864;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:150,32:0.18:182
chr16	75794738	rs7205764	T	C	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	76311602	rs59314262	G	GT	6125.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	76461273	rs7192076	A	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	76461519	rs9927638	C	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	76461588	rs9938200	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	76482605	.	C	CT	116	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=12;HapScore=2;MGOF=64;MMLQ=17;MQ=59.81;NF=4;NR=4;PP=116;QD=15.25;SC=AGAAGGGAACCTTTTTTTTTT;SbPval=0.49;Source=Platypus;TC=28;TCF=16;TCR=12;TR=8;WE=76482613;WS=76482595;set=Platypus	GT:AD:AF:DP	0/1:20,8:0.29:28
chr16	76486581	rs28584228	A	G	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	76501542	rs1002974	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	76509948	rs9935035	C	T	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	76532392	rs12932943	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	76532583	rs12933808	A	G	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	76555005	rs72373340	AT	A	4450.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	76555015	rs11353699	CT	C	1987.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.490;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.510;QD=16.99;ReadPosRankSum=0.904;SOR=0.441;set=HC	GT:AD:AF:DP	1/1:8,109:0.93:117
chr16	76569754	rs6564348	A	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	76587202	rs7202925	T	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr16	76587331	rs7184958	T	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	76587647	rs4243123	G	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	76902850	rs7499278	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	77225217	rs3214483	A	AG	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	77228629	rs2232503	A	G	8317.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr16	77228866	rs2232504	T	C	8893.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	77233338	rs8398	C	T	2217.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.199;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.59;ReadPosRankSum=-0.473;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr16	77233394	rs4888607	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	77242083	rs9934426	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	77242284	rs1424146	G	A	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	77246988	rs7203616	T	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	77327226	rs4888618	C	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	77334293	rs114018664	C	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	77353973	rs9930984	G	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	77359919	rs11640912	A	T	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	77360019	rs62044892	G	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	77389762	rs8058333	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	77389956	rs8059275	A	G	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	77393446	rs3067843	GA	G	165.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;MQRankSum=0.588;QD=11.05;ReadPosRankSum=0.117;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr16	77398081	rs1948719	T	C	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	77398386	rs2562119	A	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	77401684	rs2434895	T	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	77465036	rs1366545	C	G	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	77769369	rs308926	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	77769647	rs186305	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	77769679	rs17716789	C	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	77775459	rs11648791	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	77910418	rs3751765	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	77912966	rs3751767	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	77913219	rs9930395	C	T	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr16	78062159	rs2075738	C	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	78062190	rs2735403	T	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	78062219	rs2204891	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	78063000	rs7197560	T	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	78063064	rs7190832	G	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	78063143	rs7192416	C	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	78085754	rs2344923	C	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	78142209	rs4887937	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	78143607	rs2287972	C	T	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	78148794	rs1469117	T	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	78312489	rs8048830	G	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	78312497	rs8050128	C	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	78420983	rs61054844	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	78458699	rs74618473	G	A	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	78458750	rs4130513	G	A	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	78790765	rs7199110	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	79245465	rs384216	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	79245820	rs383362	G	T	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	79245956	rs2288034	C	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	79245961	rs2288033	T	C	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	79619727	rs60080524	GAAA	G	1634.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.349;QD=30.84;ReadPosRankSum=1.377;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr16	79628536	rs66467731	AT	A	287.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-1.537;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr16	79633805	rs5818251	TGCC	T	4573.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	80574871	rs186083546	T	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,158:0.99:160
chr16	80574886	rs9922406	T	C	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	80577098	rs8049769	G	T	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	80581547	rs6564762	C	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	80581580	rs6564763	A	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	80581631	rs6564764	G	A	4843.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.823;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=1.591;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,191:0.99:192
chr16	80583642	rs74031512	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	80641906	rs9940301	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	80641931	rs9933302	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr16	80646592	rs896624	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	80718619	rs75914279	C	T	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr16	81010073	rs1127390	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	81012303	rs9937731	C	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	81014684	.	CA	C	26	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=14;HapScore=2;MGOF=35;MMLQ=16;MQ=65.19;NF=0;NR=2;PP=26;QD=15.0;SC=CAATATGAGGCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=81014692;WS=81014674;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	81015588	rs112144114	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	81050817	rs9889194	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81050965	rs935939	A	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	81051203	rs11866803	T	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	81051327	rs935940	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	81053682	rs10602593	CT	C	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	81056111	rs9921914	C	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	81060124	rs11150336	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81062151	rs10579473	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.885;QD=0.54;ReadPosRankSum=1.248;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:118,29:0.20:147
chr16	81066159	rs35840091	G	GT	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=1.414;QD=10.01;ReadPosRankSum=0.363;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr16	81069449	rs2602430	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81076202	rs2278021	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	81077384	rs34105513	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	81078081	rs36040615	A	G	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	81087488	rs12927239	G	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	81087679	rs12928648	C	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	81094760	rs804884	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	81094792	rs12929250	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	81118289	rs7187102	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	81129590	rs8177849	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81142257	rs1869348	T	C	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	81142358	rs4520846	C	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	81143032	rs77387537	A	G	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	81143048	rs113193858	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	81145630	rs8053975	C	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	81145664	rs8054611	A	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81145675	rs8059153	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	81145737	rs8059318	T	G	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	81145807	rs8054182	C	G	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	81151122	rs4889238	A	C	12996.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr16	81151163	rs8053191	C	T	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	81155068	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.644;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr16	81157576	rs57043371	G	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	81164274	rs11150345	C	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	81167314	rs3826050	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	81167342	rs11150346	T	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81173136	rs12918619	T	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	81183624	rs5818322	CT	C	196.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.57;ReadPosRankSum=-0.447;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr16	81193156	rs10871403	C	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	81198441	rs7191852	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	81199440	rs78430346	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	81199520	rs12931217	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	81199572	rs12927442	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	81201448	rs11313252	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	81201620	rs35292101	C	A	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	81201625	rs34504526	G	A	10879.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	81201774	rs34172014	C	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	81201837	rs35055907	G	A	323.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	81201853	rs72822032	C	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81201868	rs34722210	G	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	81201872	rs76815905	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	81204172	rs11648241	A	C	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81204423	rs11640279	T	C	9917.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr16	81204751	rs79736308	G	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81211496	rs9935113	C	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	81211548	rs9934605	G	A	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	81211720	rs9925522	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	81213378	rs4889261	A	G	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	81213422	rs4889262	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	81219329	rs9319563	G	T	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr16	81224423	rs11647179	G	A	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	81232275	rs7205673	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81232564	rs7194871	T	G	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	81240931	rs11150368	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	81241098	rs11150369	C	T	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	81241098	.	CGG	TGC	1652	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=5;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=24;NR=25;PP=1652;QD=34.8054668339;SC=CTTACCTCGGCGGGTTGTAGG;SbPval=0.58;Source=Platypus;TC=49;TCF=24;TCR=25;TR=49;WE=81241108;WS=81241088;set=Platypus	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81241100	rs11150370	G	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	81242102	rs6420424	G	A	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	81242148	rs55980345	GTT	G	7337.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	81242151	rs5818326	T	C	7345.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	81242194	rs6564838	T	C	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	81242366	rs6564839	T	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81242386	rs6564840	T	G	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	81272625	.	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.488;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr16	81293207	rs76073106	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	81298352	rs112981006	G	A	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	81301460	rs34500060	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	81301694	rs12934922	A	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	81314381	rs7188650	T	C	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	81320830	rs8048342	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	81398635	rs2608555	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	81410946	rs80326128	C	G	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	81529181	rs112511178	A	G	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	81679151	rs4889356	A	G	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr16	81703861	rs11150398	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	81704014	rs12920501	C	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	81712240	rs74910737	G	GC	1613.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	81816787	rs4476171	T	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	81816818	rs72834729	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr16	81923018	.	GTTTCT	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.318;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,3:0.18:17
chr16	81929488	rs1143688	C	T	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	81931362	rs8053636	T	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	81931403	rs8049305	A	G	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	81939150	rs4435248	G	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	81941319	rs1143689	C	T	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	81946423	rs4243222	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	81946471	rs4243223	G	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	81953081	rs12448130	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	81953368	rs12448152	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	81954789	rs12446127	C	G	3571.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=-1.170;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:4,164:0.98:168
chr16	81954996	.	A	AT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=9.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.310;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr16	81956927	rs4485360	C	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	81964977	rs7187863	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	81973474	rs4405546	C	A	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81973805	rs12923387	A	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	81973807	rs141767011	G	GTGCA	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	82033022	rs11861598	A	G	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	82033612	rs16956174	T	C	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	82033964	rs4383138	T	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr16	82124776	rs2955154	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	82182832	rs11859599	C	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	82182973	rs16956538	T	C	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	82203705	rs2303265	A	C	11336.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	82203711	rs2303264	G	T	11518.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	82203742	rs1134847	T	C	14077.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	82203758	rs2303262	C	T	14269.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	82203768	rs2303261	G	T	13586.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	82673047	rs4782724	C	T	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	82673209	rs76597901	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	82882174	.	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=2.650;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:119,22:0.16:141
chr16	82917768	rs929847	G	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	82917852	rs929848	T	C	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	83065664	rs6565105	G	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	83065965	rs2228685	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	83159227	rs151001954	A	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	83159337	rs140871269	G	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	83159350	rs7196370	A	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	83251210	rs4572385	G	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	83520298	rs16960645	T	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	83520342	rs57457070	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	83775093	.	G	GTA	70.25	.	AC=2;AF=1.00;AN=2;DP=3;MQ=63.51;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	83816828	rs153654	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	83817019	rs1048612	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	83828487	rs147186305	G	GA	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr16	83842792	rs8053753	G	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	83873259	rs435383	G	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	83873285	rs435367	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	83873312	rs367415	C	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=1.846;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr16	83873471	rs34854190	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	83886451	rs115517215	C	T	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	83886469	rs441219	T	C	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	83886498	rs453426	A	G	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	83933296	rs446036	T	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	83982460	rs4782863	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	83982960	rs4782864	C	T	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	83983071	rs4782865	C	T	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	83983144	rs144657094	C	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	83983755	rs2245008	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	83983867	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=60;MMLQ=24;MQ=57.98;NF=133;NR=113;PP=2965;QD=20;SC=GGCAGATACGCACACACAGAC;SbPval=0.53;Source=Platypus;TC=248;TCF=133;TCR=115;TR=246;WE=83983875;WS=83983857;set=Platypus	GT:AD:AF:DP	1/1:2,246:0.99:248
chr16	83983892	.	CA	TG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=46;MMLQ=26;MQ=57.18;NF=110;NR=108;PP=2947;QD=20;SC=GCATACATACCAGCACACACG;SbPval=0.53;Source=Platypus;TC=224;TCF=113;TCR=111;TR=218;WE=83983901;WS=83983882;set=Platypus	GT:AD:AF:DP	1/1:6,218:0.97:224
chr16	83984578	.	GCA	G	1329	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=31;MMLQ=24;MQ=41.1;NF=17;NR=7;PP=1329;QD=56.375;SC=ATACATACTGGCACACACGTA;SbPval=0.73;Source=Platypus;TC=32;TCF=21;TCR=11;TR=24;WE=83984587;WS=83984566;set=Platypus	GT:AD:AF:DP	1/0:8,24:0.75:32
chr16	83984776	rs28555129	A	C	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.65;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	83984844	rs2244899	A	C	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=43.63;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	83984850	rs2244898	C	G	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.15;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	83984857	rs112842302	C	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=46.58;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	83986885	rs7203516	C	G	14680.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	83986888	rs7203864	G	A	14551.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	83992785	rs2665296	G	A	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	83994569	rs2136662	G	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	83998662	rs733728	A	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	83999033	rs173776	A	G	10045.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:4,388:0.99:392
chr16	83999665	rs74369854	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	84002403	.	C	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr16	84002406	.	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr16	84011979	rs925332	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	84012104	rs925331	T	C	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	84014482	rs16962369	C	G	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr16	84014563	rs12102668	G	A	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	84014759	rs111637074	G	GTCCAGGGC	2216.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr16	84014778	rs60683281	C	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	84024286	rs72793619	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	84027016	rs72793621	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	84027181	rs16962432	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	84027225	.	CTG	C	165	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=34;MMLQ=27;MQ=58.52;NF=0;NR=5;PP=165;QD=33.6;SC=GCAAGGTGAGCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=18;TCF=1;TCR=17;TR=5;WE=84027234;WS=84027215;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr16	84027242	.	TG	T	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.304;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.728;QD=8.85;ReadPosRankSum=-0.809;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	84027243	rs182890480	G	T	113.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.915;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-0.549;QD=7.58;ReadPosRankSum=0.707;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr16	84027244	.	TG	T	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.469;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.728;QD=8.85;ReadPosRankSum=-0.281;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	84028123	rs2292326	T	C	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	84028428	rs150916876	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	84030955	rs8052260	C	T	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	84031675	rs59756669	T	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	84031722	rs2292328	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	84032023	rs7201492	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	84034310	rs36152286	C	T	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	84034439	rs73248883	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	84034447	rs79781941	G	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.84;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	84034513	rs16962491	C	G	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	84035320	rs34647179	G	A	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	84035348	rs35016623	G	T	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr16	84035446	rs2271298	C	G	10072.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr16	84035531	rs2271300	A	G	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr16	84035594	rs2271302	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	84035838	rs1995866	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	84035844	rs5012586	T	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	84035919	rs5012585	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	84036011	rs34037353	C	CCT	4953.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	84043380	rs7196330	A	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	84043406	rs144862027	C	T	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	84046412	rs11149615	T	C	342.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	84046432	rs11864037	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	84046499	rs11864095	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	84046762	rs11864211	C	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	84046769	rs13336030	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	84063120	rs78965848	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	84063320	rs143276186	A	AAGGAAG	1745.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	84063337	rs115286173	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	84065710	rs907043	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	84065720	rs907044	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	84065773	.	AGTTTTGTTGTT	A	2427	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=2;HapScore=1;MGOF=43;MMLQ=27;MQ=60.0;NF=1;NR=7;PP=2427;QD=307.75;SC=TCAGATGTAGAGTTTTGTTGT;SbPval=0.65;Source=Platypus;TC=8;TCF=1;TCR=7;TR=8;WE=84065791;WS=84065763;set=Platypus	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	84065774	.	GTT	G	682.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	84067004	rs57576928	C	T	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	84070238	rs8057543	C	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	84070500	rs1317524	C	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.32;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	84070510	rs1876962	G	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	84070514	rs1876960	A	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	84075563	rs1105355	C	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	84094450	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.243;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr16	84101458	rs116331055	T	C	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	84104478	rs1980011	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	84121078	rs34335025	C	CA	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.630;QD=10.21;ReadPosRankSum=-0.271;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr16	84124602	rs8045891	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=26.22;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	84132628	rs10690442	G	GAC	6382.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	84135453	rs1049884	A	G	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	84135493	rs907045	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	84158248	rs4378600	G	C	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr16	84163458	rs11859059	T	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	84183802	rs75346263	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	84188501	rs367733826	G	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	84199368	rs141073777	GTTTC	G	1898.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	84199617	rs11866161	C	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	84203511	rs35504640	G	A	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	84203595	rs36062234	C	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84205726	rs12926474	G	A	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	84208446	rs111554344	AT	A	6457.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	84209634	rs2288019	C	G	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	84211483	rs8692	C	T	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	84212031	rs1056611	A	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	84212597	rs61753438	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	84212710	rs4150176	C	T	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	84212785	rs4150175	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	84213125	rs61730960	G	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr16	84213434	rs2230129	A	T	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	84213876	rs4150164	C	T	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	84213982	rs189700737	G	A	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	84214837	rs2303234	G	C	9669.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	84215314	rs3815814	T	C	15183.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,590:1.00:590
chr16	84215824	rs35555723	G	A	9949.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr16	84216585	rs4150139	T	C	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	84216606	rs4150138	C	T	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr16	84217062	rs4782591	C	T	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	84218565	rs2230126	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	84224929	rs200340222	C	G	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	84228199	rs11864937	G	T	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	84228218	rs139313669	C	T	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	84228237	rs11646787	A	C	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	84228305	rs11864916	C	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	84228612	rs35353940	CT	C	19139.73	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=36.11;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr16	84229090	rs115633817	C	T	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	84229436	rs62049905	G	A	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	84229559	rs2303238	T	C	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	84230065	rs370598027	G	T	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	84230235	rs16962986	T	C	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	84230376	rs2303242	T	C	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr16	84230500	rs2303243	A	C	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	84270381	rs244811	G	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	84270650	rs61743417	C	T	10049.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	84328752	rs369797	G	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	84328756	rs401782	G	C	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	84328826	rs429725	A	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	84351853	rs7184264	C	T	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	84357925	rs244786	G	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	84358121	rs244787	A	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.16;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	84358139	rs57330047	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	84360633	rs116120855	C	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	84402133	rs13330390	G	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	84402275	rs62048787	G	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	84431973	rs12148971	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	84438512	rs11149650	G	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	84444113	rs2291006	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	84444349	rs247818	A	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	84455961	rs2288573	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	84456642	rs247814	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	84459227	rs78160790	C	T	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	84459512	rs1887	G	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	84473137	rs247904	G	C	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	84473195	rs247903	T	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84481995	rs247891	T	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	84485573	rs247885	C	A	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr16	84486867	rs2435172	A	G	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	84488684	.	G	T	1109.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.66;ReadPosRankSum=-0.119;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr16	84492683	rs693552	A	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	84493144	rs410388	C	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	84494020	rs393515	G	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	84494450	rs381467	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	84495224	rs369750	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	84495770	rs2241639	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	84497186	rs2241634	C	T	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	84516309	rs433293	G	A	6545.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.216;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.024;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=-0.108;SOR=0.111;set=HC	GT:AD:AF:DP	1/1:2,266:0.99:268
chr16	84520223	rs431629	A	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84520325	rs431389	T	C	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	84520396	rs422145	A	G	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	84520537	rs431818	T	C	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	84520780	rs378384	G	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	84522867	rs422918	C	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	84522897	rs436278	G	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	84528317	rs2435171	G	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	84531307	rs442288	G	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	84531780	rs501782	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	84600676	.	AAATGGAAATTCAGCAGCAGAGTCAGTC	A	884.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	84691044	rs3751762	C	T	15447.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr16	84738420	rs73243904	C	T	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	84774120	rs4510001	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	84793720	rs60900812	T	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	84793946	rs73245646	A	G	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	84797637	rs3213810	T	A	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	84797655	rs55928403	C	T	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	84802071	rs60875796	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	84872051	rs1546124	G	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	84879286	rs12931881	G	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	84879324	rs12051168	T	C	5123.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	84879464	rs12051468	A	G	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	84882911	rs4783086	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	84882974	rs4783087	C	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	84883102	rs8061351	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	84883195	rs140532417	A	ATTG	989.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	84884072	rs4782673	T	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	84884116	rs4783090	A	G	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	84888541	rs2646127	T	C	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	84888597	rs2646126	C	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	84907499	.	G	GT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.374;QD=2.85;ReadPosRankSum=-1.135;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr16	84922859	rs767050	C	T	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	84923073	rs146325517	CG	C	3690.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	84940479	rs1874008	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	85009970	rs7195377	A	G	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	85011423	rs57465878	CA	C	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	85011480	rs8045409	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	85011622	rs8044638	G	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	85023855	rs931713	C	T	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	85105348	rs61317273	G	GT	91.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.49;ReadPosRankSum=0.157;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr16	85109328	rs16975200	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	85112002	rs2291967	T	G	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	85120364	rs11410626	G	GA	4996.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.14;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	85120609	rs2291962	A	G	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	85133872	rs3764278	G	C	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	85139173	rs8050910	G	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	85141556	rs67587184	G	A	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	85141661	rs17200833	G	A	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	85145800	rs60296580	C	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	85145977	rs9931038	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	85393188	rs57953410	C	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85691294	rs7404958	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	85721297	rs9930592	T	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	85722496	rs80063963	A	C	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	85722649	rs57115773	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	85743732	rs2305357	C	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	85768676	rs16939642	T	C	1456.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=0.335;SOR=0.457;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr16	85775064	rs388855	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	85775117	rs77310585	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	85775175	rs446444	G	A	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	85775186	rs78861859	T	C	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	85813231	rs8587	A	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	85813526	rs301163	G	A	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	85813880	rs301164	T	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	85813963	rs301165	C	T	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	85814899	rs3081701	T	TAGTC	6880.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr16	85814995	rs301166	A	G	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr16	85815074	rs301167	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	85838093	rs2599088	G	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	85838115	rs2733963	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	85838166	rs2599089	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=25.35;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	85838195	rs2733964	A	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=24.72;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	85838503	rs2599090	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	85838532	rs2733965	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	85838653	rs2599091	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	85838804	rs11419687	G	GA	1727.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	85839140	rs2599092	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	85839186	rs2733966	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	85839211	rs2075532	G	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr16	85839543	rs2641797	C	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	85839977	rs2075553	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	85840035	rs5818557	CA	C	3733.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.30;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	85945076	rs2292980	T	C	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	85945231	rs8052064	C	T	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	85946907	.	C	G	634.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	86546749	.	G	A	2164.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	86565826	rs3751803	C	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	86565860	.	C	T	4158.77	.	AC=2;AF=1.00;AN=2;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	86574618	rs16941469	G	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	86574897	rs35698660	T	TA,TAA	721.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.94;MQRankSum=0.614;QD=18.99;ReadPosRankSum=0.687;SOR=0.804;set=HC	GT:AD:AF:DP	1/2:2,11,25:0.29,0.66:38
chr16	86575281	rs9674116	G	A	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	86575293	rs9674156	C	T	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	86575460	rs3213418	C	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	86575703	rs9674276	G	C	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	86575858	rs16941478	G	A	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	86585905	rs8046613	C	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	86588655	rs2354022	G	C	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr16	86588954	rs73272425	G	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	87344687	rs74038423	C	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	87344867	rs74038425	G	A	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	87349333	rs6540037	A	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	87349489	rs7193801	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	87349529	rs7198660	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	87350997	rs4843592	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	87369157	rs55852830	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	87370045	rs57731385	G	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr16	87376623	rs4843237	C	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	87377425	rs56412475	G	A	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	87416903	rs8058715	A	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	87426028	rs8043569	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=24.77;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	87436382	rs8044820	G	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	87436463	rs8051218	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	87436764	rs1054528	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	87445363	rs1050846	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	87445839	rs3748400	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	87446053	rs2042395	G	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	87452546	rs4240794	C	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	87452584	rs8046992	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	87453342	.	GT	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.664;QD=1.07;ReadPosRankSum=0.124;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr16	87493737	rs11648852	T	C	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	87637893	.	CCTGCTGCTG	C,CCTG	5050.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=173;set=Intersection	GT:AF:DP	1/2:0.12,0.87:134
chr16	87637958	rs115916470	A	G	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	87677791	rs918367	A	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	87678144	rs918368	T	C	11438.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,438:1.00:439
chr16	87678576	rs34975147	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr16	87723838	rs34767155	T	C	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	87741929	rs151165491	G	A	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	87748198	rs2081981	G	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	87760337	rs67926154	A	C	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	87764267	rs9934565	A	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	87782258	rs16943239	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	87788756	rs2303770	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	87788864	rs2303771	G	A	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	87871714	rs2287121	T	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	87873247	rs750950	A	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	87874246	rs111888503	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	87902684	rs17853938	G	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	87921685	rs112673036	C	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	87925370	rs113816844	G	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.99;QD=22.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	87935628	rs73239028	G	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	87936161	rs4843730	A	G	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	87969777	.	TA	T	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=2.404;QD=6.83;ReadPosRankSum=4.231;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:19,36:0.65:55
chr16	88012150	rs8052854	T	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	88012310	rs74040226	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;QD=23.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	88014554	rs8052770	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	88017809	rs3815820	C	T	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.81;QD=25.37;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	88061150	rs74740586	C	T	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	88066655	rs11641367	A	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.21;QD=46.15;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	88066659	rs11646301	C	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.15;QD=42.50;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	88105394	.	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.343;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:92,23:0.20:115
chr16	88110014	rs78209926	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	88123400	rs145767060	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	88123598	rs8063486	C	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	88123697	rs8063654	C	A	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	88134285	rs11860533	A	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	88494947	rs11648572	T	C	14862.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr16	88494976	rs11640794	A	C	17862.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,695:1.00:695
chr16	88495407	rs7199961	G	C	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	88495654	rs12927001	A	G	19836.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=-2.694;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:4,776:0.99:780
chr16	88497031	rs9924504	T	C	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	88497400	rs9938800	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	88497446	rs7197071	A	G	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	88498221	rs4782300	C	T	16069.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr16	88498297	rs12445417	T	G	21953.77	.	AC=2;AF=1.00;AN=2;DB;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,838:1.00:838
chr16	88499539	rs9931465	C	G	8413.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr16	88500348	rs13334190	G	A	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr16	88502482	rs3812953	C	T	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr16	88502505	rs1983014	A	G	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr16	88504868	rs904783	A	G	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr16	88505635	rs4782301	A	G	12486.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:2,480:1.00:482
chr16	88505734	rs4782362	C	T	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr16	88535242	rs55823018	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	88535341	rs56292801	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	88535407	rs35613341	C	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	88535591	rs36024491	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	88552370	rs3751673	A	G	5937.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=-1.051;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:2,236:0.99:238
chr16	88593209	rs199766456	CCT	C	140.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.472;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.832;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr16	88593210	rs35678431	CT	C	1404.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr16	88599695	rs67712719	GGA	G	5006.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	88599697	.	AG	CC	1755	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=18;NR=28;PP=1755;QD=39.3145190187;SC=GCCAGAGCGGAGCCTCTGGCC;SbPval=0.54;Source=Platypus;TC=46;TCF=18;TCR=28;TR=46;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	88599699	.	CCTCTGG	C	1891	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=24;MQ=60.11;NF=3;NR=28;PP=1891;QD=62.1290322581;SC=CAGAGCGGAGCCTCTGGCCCA;SbPval=0.58;Source=Platypus;TC=31;TCF=3;TCR=28;TR=31;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	88599700	rs67322929	CT	C	5004.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	88599702	rs67873604	CTGG	C	5002.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	88599953	rs375798810	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	88601481	rs2279777	C	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	88643457	rs936621	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	88644005	rs899728	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	88664758	rs3887592	T	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	88666035	rs6500481	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	88675177	rs9932685	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	88675194	rs9932692	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	88675529	rs9930974	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	88691558	.	G	T	3389.77	.	AC=2;AF=1.00;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	88695300	rs4782387	C	T	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	88695332	rs4782306	G	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	88695338	rs4782388	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	88705804	rs2254073	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	88709712	rs7195830	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	88709737	rs1049255	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	88709828	rs1049254	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	88712733	.	C	T	314	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=2;MGOF=29;MMLQ=24;MQ=60.0;NF=12;NR=5;PP=314;QD=20.5159536792;SC=GGGACGTGCGCGGACCGGGGC;SbPval=0.86;Source=Platypus;TC=34;TCF=20;TCR=14;TR=17;WE=88712741;WS=88712723;set=Platypus	GT:AD:AF:DP	0/1:17,17:0.50:34
chr16	88712733	.	C	CGGACCGGGGCTGCAAAGTCTCAGCACAAGGCAGACCCAGGGGACGTGCGT	1222.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.91;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	88712767	rs12933505	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	88712780	rs12933512	A	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	88712780	.	ACA	CCG	807	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=60.0;NF=27;NR=8;PP=807;QD=24.5847964246;SC=CTTGATGTGGACACTAGCGGC;SbPval=0.56;Source=Platypus;TC=39;TCF=30;TCR=9;TR=35;WE=88712790;WS=88712757;set=Platypus	GT:AD:AF:DP	1/1:4,35:0.90:39
chr16	88712782	rs12709103	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=4.021;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	88713236	rs4673	A	G	10855.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr16	88713473	rs4782308	G	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	88713501	rs4782393	A	G	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.743;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	88716660	rs72558355	C	T	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	88717386	rs8053867	T	C	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	88719943	rs74033340	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	88723538	rs9302778	TGG	T	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.57;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	88729670	rs7193657	G	T	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	88752693	rs11076698	T	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	88762943	rs1132579	A	T	682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.808;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=1.420;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:6,49:0.89:55
chr16	88766168	rs55780854	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	88767861	rs2306048	C	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	88772491	rs7194105	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	88776141	rs4598894	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	88776461	rs115768982	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	88778133	rs2879902	C	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	88778427	rs11361741	GC	G	4513.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	88778615	rs7205989	G	A	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	88778814	rs142973829	G	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	88779323	.	CGAGAGCCCCCCTTCCCCGGGCCCTGACCCCCACTCATGCCCCT	C	1514.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.72;MQRankSum=3.807;QD=28.05;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:2,52:0.96:54
chr16	88779739	rs11549837	A	G	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	88779898	rs73262670	C	T	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	88779952	rs74757912	C	CCT	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	88780472	rs7205626	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	88780518	rs3826076	A	G	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	88780603	rs73262673	C	G	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=25.76;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr16	88780635	rs149847195	G	GGTGT	7160.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=43.93;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	88780685	rs7191439	C	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	88780923	rs8050715	C	G	7282.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	88780954	rs73262679	C	T	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	88781125	rs8043637	T	C	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr16	88781384	.	C	CCGT	3985.73	.	AC=2;AF=1.00;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	88781419	rs2306046	A	G	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	88782676	rs2290902	A	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	88783374	rs8044367	A	G	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:3,223:0.99:226
chr16	88783449	rs8057031	C	G	12272.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	88783521	rs6500491	T	C	14500.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-1.552;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:2,568:1.00:570
chr16	88783738	rs4782432	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	88783903	rs7186082	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	88784114	rs11641326	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	88785262	rs142920248	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	88786967	rs4401037	C	T	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	88787704	rs8043924	G	C	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	88788309	rs34346312	C	G	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr16	88788477	rs9935872	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	88788903	rs4238687	T	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	88788934	rs4238686	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	88792047	rs4782430	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	88792097	rs4782429	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	88793090	rs4516218	A	G	9928.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	88793102	.	GC	CG	5503.77	.	AC=2;AF=1.00;AN=2;DP=239;JOINED;set=Intersection	GT:AD:AF:DP	1/1:6,222:0.97:228
chr16	88793377	rs77276858	G	A	15480.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr16	88793632	rs61649074	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	88793813	rs8057198	T	C	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	88793823	rs2879904	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.16;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	88793858	rs2242170	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	88798625	rs73264802	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	88798731	rs112680298	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr16	88799005	rs73266607	T	C	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	88799674	rs58273686	G	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	88800122	rs9928479	C	G	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	88800372	.	GTCC	G	3183.73	.	AC=2;AF=1.00;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	1/1:13,140:0.92:153
chr16	88800395	.	CCTG	C	645	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=27;MQ=60.17;NF=5;NR=39;PP=645;QD=14.8409090909;SC=TCCTCCTCCTCCTGCTGCTGC;SbPval=0.92;Source=Platypus;TC=70;TCF=14;TCR=56;TR=44;WE=88800405;WS=88800385;set=Platypus	GT:AD:AF:DP	1/0:26,44:0.63:70
chr16	88800913	rs34908386	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	88801002	rs79613370	C	T	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	88801457	rs115016757	G	A	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr16	88802511	rs36100417	G	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	88802830	rs11860864	A	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	88803124	rs13333358	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	88803195	rs4782410	T	C	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	88804618	rs8060643	G	A	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr16	88804734	rs7184427	A	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	88804924	rs34600315	TC	T	7773.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	88805231	rs12443723	G	A	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	88805236	rs7185664	G	A	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	88805256	rs57868176	C	A	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	88805282	rs57044148	C	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	88807862	rs4040061	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	88807896	rs7404939	G	A	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	88808743	rs6500495	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	88810082	rs73266647	A	G	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	88810129	rs8053135	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	88815647	rs112962992	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.567;QD=0.88;ReadPosRankSum=-0.266;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr16	88870099	rs865103	T	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	88871908	rs1834065	A	G	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	88872145	rs507329	T	C	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	88872229	rs480727	A	G	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	88872511	rs510862	T	C	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	88874626	rs77893539	G	A	16164.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	88874632	rs572275	C	G	15776.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr16	88874778	rs15829	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	88875928	rs4695	T	C	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	88876103	rs2070256	T	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,140:0.99:142
chr16	88876620	rs8191492	G	C	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr16	88878357	rs8191469	G	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	88884466	rs2303271	C	T	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr16	88891078	rs73251097	C	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	88891362	rs73251099	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	88891438	rs75205147	G	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	88891440	rs76578155	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	88891464	.	G	GGGGCTGGAGCTCCTGGGTGGCCA	411.74	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	88893013	rs3859024	C	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	88893373	rs74035850	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	88901850	rs11076721	T	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	88902183	rs1064315	G	A	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	88902518	rs2269333	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	88946955	rs564705	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	89006622	.	C	T	209.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr16	89017602	.	C	T	1420	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=64;MMLQ=26;MQ=52.07;NF=42;NR=21;PP=1420;QD=23.0916065484;SC=ACCTGTCTTCCGGATCTGTTC;SbPval=0.38;Source=Platypus;TC=70;TCF=49;TCR=21;TR=63;WE=89017610;WS=89017592;set=Platypus	GT:AD:AF:DP	1/1:7,63:0.90:70
chr16	89017663	.	G	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=45;MMLQ=24;MQ=58.25;NF=85;NR=84;PP=2965;QD=20;SC=GTTGGCACCTGTCTTCCGGGT;SbPval=0.47;Source=Platypus;TC=174;TCF=90;TCR=84;TR=169;WE=89017671;WS=89017653;set=Platypus	GT:AD:AF:DP	1/1:5,169:0.97:174
chr16	89119037	rs73262119	C	T	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	89119156	.	CT	C	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.731;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	89119203	rs73262121	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	89160419	.	G	GCCCACGGGA	187.87	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	89167140	rs7201122	G	C	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	89178457	.	G	GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCGCCGCCGTGGGTCTC	1985.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=104.51;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	89178773	rs4782449	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	89180664	rs9940965	C	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	89180883	rs3743979	G	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	89180935	rs3743980	G	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	89187378	rs3743983	G	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	89188672	rs8058601	C	A	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	89211662	rs140859425	C	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	89212200	rs4302032	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	89212282	rs60881405	A	T	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	89234676	rs12597281	A	G	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	89246670	rs59865771	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	89251693	rs148424541	C	T	10016.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	89251798	rs2287356	C	T	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	89251851	rs2287354	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	89258747	rs75791347	A	C	1965.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=1.603;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr16	89259993	rs3815615	A	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	89262453	rs151127561	G	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	89263851	rs3743986	T	C	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	89263964	rs76696221	G	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	89265101	rs74640353	C	A	7613.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.438;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.020;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=0.622;SOR=0.116;set=HC	GT:AD:AF:DP	1/1:2,300:0.99:302
chr16	89265212	rs78845109	C	G	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	89265466	rs12926888	A	G	14211.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr16	89267769	rs34679577	GC	G	475.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.45;QD=36.59;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	89267784	.	A	G	386.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=38.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	89287298	rs149521985	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	89287460	rs72819396	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	89291309	rs28533907	A	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	89293281	rs74033442	G	A	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	89293525	rs7201172	G	A	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	89293890	rs7197077	C	T	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	89294044	rs74033443	A	G	10438.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,400:1.00:402
chr16	89295046	rs12927047	T	C	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	89299052	rs58421580	T	TG	1176.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.854;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.03;ReadPosRankSum=0.829;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr16	89299053	rs59572628	T	TA	661.27	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.043;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:7,34:0.83:41
chr16	89299200	rs61078268	C	A	14598.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr16	89299268	.	ATCAACTCGCACTGCGTATGCAAC	A	5888.73	.	AC=2;AF=1.00;AN=2;DP=537;set=Intersection	GT:AD:AF:DP	1/1:4,232:0.98:236
chr16	89299851	rs35483107	G	A	20525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;MQRankSum=2.323;QD=44.33;ReadPosRankSum=1.045;SOR=0.384;set=HC	GT:AD:AF:DP	1/1:3,460:0.99:463
chr16	89299851	.	GTG	ATA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=25;MQ=57.64;NF=118;NR=107;PP=2947;QD=20;SC=CTCGCACTGCGTGTGCAACTC;SbPval=0.51;Source=Platypus;TC=242;TCF=127;TCR=115;TR=225;WE=89299861;WS=89299841;set=Platypus	GT:AD:AF:DP	1/1:17,225:0.93:242
chr16	89299853	rs34789784	G	A	20525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;MQRankSum=2.055;QD=40.81;ReadPosRankSum=0.515;SOR=0.393;set=HC	GT:AD:AF:DP	1/1:3,500:0.99:503
chr16	89299964	rs74035761	A	C	19870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.58;ReadPosRankSum=-0.501;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,455:1.00:456
chr16	89299969	rs74035762	C	T	20607.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.69;ReadPosRankSum=-0.254;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,450:1.00:451
chr16	89300015	rs62068548	A	G	20402.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr16	89300088	rs74035763	A	C	22529.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,558:1.00:559
chr16	89300117	rs112060123	T	TCA	3880.73	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.48;QD=34.65;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	89300147	rs62068549	A	G	19627.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:4,454:0.99:458
chr16	89300159	.	A	G	1844	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=70;MMLQ=24;NF=53;NR=70;PP=1844;QD=15.2745627036;SC=ATGCAACTCAACTCGCACTGC;SbPval=0.58;Source=Platypus;TC=316;TCF=140;TCR=176;TR=123;WE=89300167;WS=89300149;set=Platypus	GT:AD:AF:DP	0/1:193,123:0.39:316
chr16	89300181	.	A	AGCTCGC	698.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-1.615;QD=11.84;ReadPosRankSum=5.486;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:15,44:0.75:59
chr16	89300182	.	A	G	2965	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=63;MMLQ=24;NF=94;NR=129;PP=2965;QD=20;SC=ATGCAACTCAACTCGCACTGC;SbPval=0.39;Source=Platypus;TC=280;TCF=112;TCR=168;TR=223;WE=89300190;WS=89300172;set=Platypus	GT:AD:AF:DP	1/1:57,223:0.80:280
chr16	89300182	.	A	ACTGCGTATGCAACTCAG	8002.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=1.482;MLEAC=2;MLEAF=1.000;MQ=58.13;MQRankSum=-2.334;QD=28.68;ReadPosRankSum=4.386;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:16,263:0.94:279
chr16	89379900	rs16965550	G	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	89379936	rs3102350	T	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	89389645	rs3114900	G	C	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.50;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	89612979	.	ACC	A,AC	2384.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=0.543;SOR=0.709;set=HC	GT:AD:AF:DP	1/2:12,38,64:0.33,0.56:114
chr16	89644178	rs2271914	C	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	89645321	rs78176582	C	T	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	89652246	rs147652223	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	89662387	.	GAGACGCACAGCACACACGTGAGGTTCTACCAGGCA	G	3060.73	.	AC=2;AF=1.00;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	89704365	rs1126464	G	C	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	89717781	rs141950187	AAAAC	A	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr16	89717808	.	ACAAAAT	A	270	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=27;MQ=60.7;NF=7;NR=4;PP=270;QD=25.2727272727;SC=AAACAAACAAACAAAATATAT;SbPval=0.58;Source=Platypus;TC=17;TCF=11;TCR=6;TR=11;WE=89717821;WS=89717798;set=Platypus	GT:AD:AF:DP	1/0:6,11:0.65:17
chr16	89720409	rs258338	T	A	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	89724572	rs154664	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	89735923	rs9937322	G	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	89753971	rs258325	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr16	89754255	rs258324	T	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	89757199	rs62068364	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	89757905	rs55819627	C	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	89758973	rs187282	A	G	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	89760552	rs460057	T	C	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	89760652	rs2162943	C	T	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	89760712	rs2115400	G	A	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	89763045	rs460367	C	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	89763214	rs4247353	T	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	89763359	rs3803690	G	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	89774396	rs1110331	G	A	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	89774411	rs11860230	T	C	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	89775422	rs59660050	C	G	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	89775429	rs143353176	C	CCCCG	2942.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	89777761	rs12920315	C	T	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	89778224	rs7206836	G	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	89804335	rs17233826	CT	C	13732.73	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:2,458:1.00:460
chr16	89805261	rs1800359	A	G	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	89805977	rs1061646	G	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	89806347	rs7195906	A	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	89811196	rs9923733	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	89815217	rs1800345	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	89818491	rs3743860	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	89828977	rs113028128	G	GA	245.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr16	89829201	rs9806894	G	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	89836323	rs7195066	C	T	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	89836507	rs7200990	T	C	6524.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	89836865	rs886951	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	89836872	rs886950	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	89838078	rs1800340	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	89842029	rs3785275	C	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	89845110	rs7187436	A	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	89845194	rs1800337	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	89849480	rs2239359	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	89849583	rs2239360	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	89857622	rs1057042	T	C	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	89857700	rs8049660	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	89857964	rs1800330	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	89858505	rs6500452	T	C	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr16	89858525	rs1800287	C	G	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr16	89859008	rs3856	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	89859015	rs35617323	GT	G	1712.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	89866043	rs7190823	T	C	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr16	89866160	rs7186192	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	89869761	rs1800286	T	C	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	89874559	rs11076627	A	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	89874628	rs1800285	C	T	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr16	89882807	rs78004870	G	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	89882826	rs72631431	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	89902482	rs12598477	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	89912063	rs13331995	T	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	89925556	rs7200842	G	A	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr16	89952385	.	C	CGCCCTTCTCTGCGGCT	768.37	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr16	89964952	rs72813432	A	G	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	89981303	.	G	T	192	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=0.9997;HP=2;HapScore=2;MGOF=20;MMLQ=26;MQ=57.65;NF=10;NR=1;PP=192;QD=20.615564777;SC=ACATTTGTGTGTGTGTGCCTG;SbPval=0.85;Source=Platypus;TC=12;TCF=10;TCR=2;TR=11;WE=89981311;WS=89981293;set=Platypus	GT:AD:AF:DP	1/1:1,11:0.92:12
chr16	89981345	.	T	TTG	955	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=27;MQ=58.84;NF=10;NR=11;PP=955;QD=46.0;SC=GGGTGCACATTTGTGTGTGTG;SbPval=0.53;Source=Platypus;TC=24;TCF=11;TCR=13;TR=21;WE=89981353;WS=89981335;set=Platypus	GT:AD:AF:DP	1/1:3,21:0.88:24
chr16	89986252	rs3212366	T	C	7939.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	90000925	rs4396536	T	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	90002290	rs1135425	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	90020861	rs7195043	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	90037828	rs4785755	G	A	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr16	90050880	rs4785759	A	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	90093969	rs3743829	T	C	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	90094195	rs3743827	A	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	90094214	rs3743826	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	90095277	rs7191175	T	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	90095561	rs3785183	C	T	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.38;QD=26.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	90095597	rs71137702	T	TGGGGCAGCCTACGGGGCAGGCTGC	2831.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	90099061	rs4324129	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	90104019	rs2241036	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	90109519	rs2241032	G	A	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	90109711	rs3743825	A	G	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.02;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	90109756	rs3833069	G	GC	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	90110027	rs3743824	G	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr16	90110284	rs3743821	G	A	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	90110289	rs1048148	C	A	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	90110737	rs3743817	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	90124621	rs7184954	A	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	90141477	rs7196459	T	G	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	90161065	rs8051193	A	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	90161170	rs8050754	C	T	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	90161274	rs6500467	T	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	90161292	rs6500468	G	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	63547	rs73971657	G	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	65404	rs114427950	C	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	65632	rs7207457	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	131709	rs11150871	A	G	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	131756	rs12451279	T	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	171290	rs111745556	G	A	2955.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.05;ReadPosRankSum=-0.392;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:2,116:0.98:118
chr17	181474	rs12953074	T	C	13951.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	181479	rs12947988	C	A	14039.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	182990	.	A	C	1372	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=18;MQ=55.13;NF=21;NR=54;PP=1372;QD=18.7569495006;SC=GACACAGAGAAGGCCATTAGA;SbPval=0.7;Source=Platypus;TC=82;TCF=26;TCR=56;TR=75;WE=182998;WS=182980;set=Platypus	GT:AD:AF:DP	1/1:7,75:0.91:82
chr17	263294	.	C	G	441	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=1;HapScore=2;MGOF=15;MMLQ=18;MQ=52.26;NF=13;NR=13;PP=441;QD=18.2988927903;SC=CCGACCCCGACGCCCTCAAGG;SbPval=0.52;Source=Platypus;TC=27;TCF=13;TCR=14;TR=26;WE=263302;WS=263284;set=Platypus	GT:AD:AF:DP	1/1:1,26:0.96:27
chr17	263606	rs180817296	C	T	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=-0.378;QD=27.21;ReadPosRankSum=-1.117;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:17,35:0.67:52
chr17	263613	rs184547508	C	A	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=49.49;MQRankSum=-0.729;QD=26.29;ReadPosRankSum=-1.854;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:18,39:0.68:57
chr17	263615	rs75457484	C	T	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=49.49;MQRankSum=-0.729;QD=27.03;ReadPosRankSum=-2.040;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:18,39:0.68:57
chr17	263622	rs76926791	A	G	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=52.59;MQRankSum=0.731;QD=21.93;ReadPosRankSum=-4.389;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,66:0.79:84
chr17	295585	.	TA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.610;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr17	295777	rs9902142	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	422896	rs2034087	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	423051	rs2034088	T	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	436196	rs79639543	A	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	440108	rs11653961	A	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	463843	rs741677	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	465775	rs2075443	G	A	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	505162	rs4968055	A	G	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	505227	rs7225041	G	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	505250	rs4968092	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	530339	rs16954064	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	556485	rs60631479	C	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	602753	.	T	TA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.99;ReadPosRankSum=0.985;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr17	618039	rs2474694	G	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	618100	rs2955626	C	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	643729	rs78582373	G	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr17	648186	rs7813	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	648498	rs2740349	C	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	649547	rs910925	G	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	649935	rs2740348	G	C	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	650156	rs182380523	A	G	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	673895	rs2644706	C	G	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	683981	.	CAA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.59;ReadPosRankSum=0.349;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr17	686296	rs34512506	GT	G	129.75	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr17	686589	rs35144249	C	CT	580.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.143;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr17	704480	rs570710	C	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	706862	rs598974	G	C	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr17	706933	rs61731770	C	T	5102.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.028;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.942;SOR=0.113;set=HC	GT:AD:AF:DP	1/1:2,202:0.99:204
chr17	708345	rs76916305	C	T	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	725433	rs503779	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	767355	rs72812010	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-7.560;QD=0.64;ReadPosRankSum=-0.488;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:121,20:0.14:141
chr17	767377	.	G	GCACGTTTACCATTGCTCGGTCCCACGTTTACCGTTGCTCGGTTCCGGTGAAGGGA	4933.73	.	AC=2;AF=1.00;AN=2;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=38.85;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:2,125:0.98:127
chr17	882474	.	AGGGCAGGGGTAACGGGCGTGGGGGGC	A	1458.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	910636	rs2586304	A	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	915333	rs67186058	G	C	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	915368	rs333652	A	G	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	925764	rs2663345	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	960221	rs2304959	C	G	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	961149	rs9912632	T	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	961304	rs2260448	C	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	961900	rs2304961	G	A	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	970251	rs2258097	TG	CA	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	970413	rs2262150	C	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	976711	rs2258893	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	1083083	rs62070499	A	G	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	1183354	rs6502774	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	1264611	rs140254754	TA	T	762.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;MQRankSum=0.905;QD=11.74;ReadPosRankSum=1.247;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr17	1359363	rs2229075	T	G	9311.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	1370459	rs2302459	T	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	1371088	rs8069059	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	1371123	rs8072859	T	C	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.84;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	1371818	rs8080389	C	T	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	1373518	rs9905106	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	1373612	rs8081370	C	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	1374503	rs2302456	C	T	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	1377851	rs112303325	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr17	1377878	rs2286871	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr17	1377943	rs2286873	A	G	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	1381005	rs2286876	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	1381521	rs45456691	T	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	1381601	rs113518060	G	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	1383054	rs73292768	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	1384066	rs4790518	A	G	11922.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr17	1386049	.	CCCT	C	1177.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.28;QD=47.11;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	1386054	.	C	G	1276.77	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=47.29;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	1386056	.	A	ACTGG	1492.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.52;QD=51.47;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	1386061	rs184607444	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;QD=47.81;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	1386063	rs28732994	C	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=59.68;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	1386075	rs372806969	G	GC	3562.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=47.50;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	1386094	rs79390695	G	GCACT	5994.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.717;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=-0.231;QD=49.96;ReadPosRankSum=2.185;SOR=1.733;set=HC	GT:AD:AF:DP	1/1:2,118:0.98:120
chr17	1386095	.	G	GAC	5993.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=2.755;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.101;QD=44.73;ReadPosRankSum=1.992;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr17	1387387	rs11868607	G	A	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	1412455	rs5818804	GC	G	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	1419853	rs3815465	C	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr17	1424948	rs2277669	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	1480088	rs7222193	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	1486671	rs113605188	G	A	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1489088	rs4790208	C	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	1490230	rs148577276	AC	A	4650.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr17	1490364	.	C	T	2143.77	.	AC=2;AF=1.00;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	1490379	rs143498029	A	ACACTGCGTTTCCCG	1748.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	1490400	.	A	G	390	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=3;HapScore=4;MGOF=125;MMLQ=24;MQ=60.0;NF=7;NR=12;PP=390;QD=22.3563796077;SC=CCCGCACTGCATTTCCCACTA;SbPval=0.33;Source=Platypus;TC=31;TCF=9;TCR=22;TR=19;WE=1490417;WS=1490390;set=Platypus	GT:AD:AF:DP	0/1:12,19:0.61:31
chr17	1490409	rs8078582	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	1493972	rs7210368	T	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	1494027	rs4790668	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	1507953	rs189770286	C	A	8579.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	1516267	rs7214201	A	G	163.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=8.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.186;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr17	1516480	rs7219369	T	C	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	1516622	rs59078842	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	1519810	rs3809799	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1538302	rs3760460	C	A	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr17	1538628	rs3744644	C	G	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	1542803	rs34632795	GA	G	287.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.93;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	1548344	rs7221629	G	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	1549048	.	C	G	3833.77	.	AC=2;AF=1.00;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	1549986	rs7212294	A	G	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	1551231	rs34982553	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	1552055	rs2272009	C	A	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	1552171	rs76453306	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	1552836	rs9915159	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	1552936	.	C	G	4626.77	.	AC=2;AF=1.00;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	1554463	rs369391284	C	T	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	1554770	rs1802491	A	G	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	1558921	.	A	AT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.090;QD=2.81;ReadPosRankSum=-0.505;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr17	1559647	rs9889459	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	1562872	rs149754453	GAAACC	G	3291.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr17	1565461	rs3814969	A	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	1565588	.	C	A	745.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	1576369	rs11078563	C	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	1576562	rs11078564	C	T	6807.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	1577690	rs28715427	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr17	1578032	rs8070091	A	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	1578122	rs8066413	C	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=26.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	1578835	rs35570313	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	1578939	rs33965342	C	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	1579131	rs377204605	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	1580929	rs11078565	G	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	1582010	rs116616717	C	T	9891.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr17	1582205	rs9902534	G	A	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	1584324	rs7503397	A	G	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	1585130	rs11559305	A	G	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,394:0.99:396
chr17	1611043	rs373889759	C	T	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	1611433	rs4790809	A	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	1611545	rs4790810	A	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	1612777	rs11078594	G	C	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	1630208	rs57207396	C	T	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,363:1.00:364
chr17	1630395	rs59643265	T	C	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr17	1630584	rs7221974	A	G	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr17	1633868	rs62090047	C	T	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	1635614	rs62090048	T	C	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	1636934	rs3809870	A	G	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	1637074	rs3809871	A	G	10682.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	1637302	rs3809872	A	G	11594.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:1,442:1.00:443
chr17	1639458	rs11549259	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr17	1649267	rs7501729	A	G	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	1651780	rs2277695	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	1657653	rs1057335	G	A	21978.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,835:1.00:835
chr17	1657899	rs1057355	G	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	1657979	rs67887323	TG	T	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	1673276	rs1136287	C	T	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	1673405	rs12603825	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	1674544	rs71375537	CT	C	76.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-0.000;QD=6.94;ReadPosRankSum=0.199;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr17	1704296	rs7224496	C	A	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	1704402	rs74746778	A	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	1707762	rs8067685	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	1761423	.	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.089;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-13.417;QD=1.84;ReadPosRankSum=-3.975;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:250,31:0.11:281
chr17	1761425	.	C	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=4.563;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-13.906;QD=1.72;ReadPosRankSum=-3.230;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:265,32:0.11:297
chr17	1761428	.	G	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-14.382;QD=1.37;ReadPosRankSum=-2.676;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:272,33:0.11:305
chr17	1761431	rs3809874	T	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-14.487;QD=1.65;ReadPosRankSum=-0.670;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:311,33:0.10:344
chr17	1761436	.	A	G	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-15.922;QD=2.09;ReadPosRankSum=-1.077;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:317,39:0.11:356
chr17	1761445	.	C	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-15.432;QD=2.81;ReadPosRankSum=-0.620;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:333,50:0.13:383
chr17	1761447	.	G	A	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-15.589;QD=2.75;ReadPosRankSum=-0.452;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:336,49:0.13:385
chr17	1761457	.	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-15.253;QD=2.88;ReadPosRankSum=0.784;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:326,52:0.14:378
chr17	1761482	.	C	T	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-14.664;QD=0.65;ReadPosRankSum=3.811;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:297,52:0.15:349
chr17	1937081	.	C	G	8066.77	.	AC=2;AF=1.00;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr17	1943888	rs2236375	T	C	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr17	1945041	rs7216804	A	G	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	1945621	rs2015866	G	T	6215.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=1.511;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,242:1.00:243
chr17	1964759	rs145926620	C	CG,CGG	1015.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.08;ReadPosRankSum=-0.525;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:3,31,12:0.67,0.26:46
chr17	1965085	rs7214308	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	1965096	rs12939002	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	1968983	rs2232486	T	C	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	2139995	.	TCACACACACACACA	TCA,T	339	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.34;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=26;MQ=60.77;NF=0,0;NR=6,6;PP=339,63;QD=57.0;SC=TCACTCTGTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=6,6;WE=2140016;WS=2139985;set=Platypus	GT:AF:DP	0/1:0.60:10
chr17	2195933	rs3215741	GA	G	4171.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	2196088	rs216206	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	2196150	rs216205	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	2200434	rs170043	A	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	2202943	rs216196	T	C	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	2203167	rs216195	T	G	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr17	2203348	rs216194	T	C	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:1,337:1.00:338
chr17	2203453	rs216193	A	G	8516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=3.755;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.40;ReadPosRankSum=1.793;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:1,348:1.00:349
chr17	2222325	rs8081273	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	2236404	rs2281726	T	C	7954.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	2238741	rs372572298	T	TAA	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.723;QD=13.58;ReadPosRankSum=0.955;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr17	2265592	rs62067014	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr17	2266055	rs8073644	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	2266709	rs2003969	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	2266799	rs745400	G	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	2266812	rs2003968	T	C	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	2267694	rs2286881	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	2268139	rs2447099	G	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	2268311	rs2248821	G	A	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	2268681	rs2429908	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	2270777	rs2429910	T	C	1216.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=1.287;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr17	2274378	rs73296287	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	2275734	rs3213712	C	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	2275844	rs3213713	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	2297567	.	G	GCACACACA	691.73	.	AC=1;AF=0.500;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.01;QD=17.29;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr17	2297571	rs140207094	G	A	2764.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.57;QD=41.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	2318695	rs4790335	G	A	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	2322776	rs1056321	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	2595251	.	CCACG	C	2354.73	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.28;QD=43.61;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	2595264	.	CCGCCCCCGCCCCCGCCA	C	2314.73	.	AC=2;AF=1.00;AN=2;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.61;QD=42.09;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	2595964	rs2302199	G	A	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	2597723	rs66960934	GCAGCGGGGACA	G	7888.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	2597969	rs2277663	C	T	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	2598627	rs1003398	T	C	10386.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	2605528	.	AAC	A	86	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=3;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=86;QD=23.5;SC=TGACACCACAAACACACACAC;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=4;WE=2605537;WS=2605518;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr17	2703907	rs12600364	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	2868935	rs12950923	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	2921210	rs56791699	C	CGT	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-1.952;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr17	2921251	rs8064800	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	2923597	rs2304981	C	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	2923767	rs2304982	A	G	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	2924011	rs4790416	T	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	2929286	rs4072679	A	C	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	2929392	rs55904912	G	A	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	2929674	rs12941934	T	C	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	2930223	rs4790114	T	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	2930339	rs4790115	G	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	2935577	rs4239038	T	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	2935591	rs4239039	T	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	2965915	rs369118820	A	T	53.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=0.319;QD=13.45;ReadPosRankSum=-0.674;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr17	2965978	rs370377496	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=41.24;MQRankSum=-0.654;QD=14.83;ReadPosRankSum=-0.067;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr17	2966032	rs202049082	C	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=46.02;MQRankSum=-2.476;QD=13.09;ReadPosRankSum=0.524;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:24,32:0.57:56
chr17	2966173	rs61752193	G	C	4015.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:220,205:0.48:425
chr17	2966191	rs61752194	G	A	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:234,204:0.47:438
chr17	2966273	rs2676567	G	A	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:269,210:0.44:479
chr17	2966308	rs2855605	C	T	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:313,252:0.45:565
chr17	2966543	rs142753580	TA	T	5234.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	2995572	rs4300683	G	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	3030582	rs9892491	C	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	3101038	.	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	3101076	rs2241092	G	C	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	3101590	rs2469791	C	T	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	3119008	rs4325604	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	3119673	rs769426	A	G	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	3119767	rs769427	C	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	3119871	rs17174920	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3143983	rs200686480	A	G	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=26.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	3300946	rs404983	T	C	721.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.238;MLEAC=2;MLEAF=1.000;MQ=51.51;MQRankSum=-1.578;QD=24.89;ReadPosRankSum=-0.893;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr17	3300970	rs61735439	C	G	514.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.464;MLEAC=2;MLEAF=1.000;MQ=46.31;MQRankSum=-2.332;QD=25.70;ReadPosRankSum=-0.856;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr17	3301549	rs150988	G	A	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	3324004	rs146946227	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.73;QD=32.37;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	3324086	rs227788	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	3336325	rs148101354	G	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-12.456;QD=6.52;ReadPosRankSum=-1.136;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:106,60:0.36:166
chr17	3337057	rs769431	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.81;QD=26.38;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	3397702	rs12948217	C	T	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	3417123	rs906418	C	T	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	3417143	rs10573788	GCA	G	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	3418119	rs10579788	AGTT	A	1448.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	3419690	rs8082339	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	3422032	rs7216486	G	A	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	3422077	rs12946883	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	3424183	rs8079980	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	3458072	rs322965	T	C	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr17	3476826	rs11441416	G	GC	6081.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.35;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	3492002	rs161390	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	3492319	rs7220415	C	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	3493200	rs222747	C	G	11423.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	3493533	rs161387	A	G	4572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.568;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:2,182:0.99:184
chr17	3514028	rs224496	G	C	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	3526637	rs150857	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	3527663	rs16953311	T	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	3563314	rs11868420	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	3566857	rs11541134	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	3567461	rs2235107	G	A	5880.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	3567615	rs73307303	C	T	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr17	3568012	rs8278	A	G	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	3572436	rs146987134	G	T	1919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.73;ReadPosRankSum=-0.728;SOR=0.576;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr17	3572436	.	GTG	TTT	662	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=1;HapScore=1;MGOF=60;MMLQ=24;MQ=60.0;NF=20;NR=8;PP=662;QD=25.5524241022;SC=GCCCGGGCTGGTGCGATGGCC;SbPval=0.49;Source=Platypus;TC=30;TCF=22;TCR=8;TR=28;WE=3572446;WS=3572426;set=Platypus	GT:AD:AF:DP	1/1:2,28:0.93:30
chr17	3572438	rs150979622	G	T	1919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.73;ReadPosRankSum=-0.633;SOR=0.576;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr17	3577273	rs160587	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	3620138	rs2293881	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	3626481	rs75053862	T	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	3631118	rs2915558	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	3631473	rs7219600	C	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	3634629	rs78134599	CTTTTTTTTTTTT	C	1297.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.408;QD=33.28;ReadPosRankSum=1.526;SOR=2.884;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr17	3635603	rs56163349	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	3635645	rs170209	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	3635768	rs3744678	A	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	3638037	rs184335	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3638356	rs112195456	C	T	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	3646977	rs10642081	C	CTT	195.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	3649214	rs1183610	G	A	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	3657175	rs220479	T	C	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	3665160	rs220471	C	G	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	3687533	rs55722017	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	3687697	.	C	CT	208.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.98;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	3704240	rs9889931	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3704380	rs148284695	C	T	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	3728975	rs188647794	G	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	3743554	rs368397813	CA	C	1033.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	3765599	rs177985	C	G	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr17	3769357	rs2567875	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3769379	rs2567874	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	3769407	rs2532946	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	3776555	rs34231122	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	3776867	rs9904678	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	3786804	rs737361	C	G	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	3786994	rs72825475	A	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	3787593	rs8082046	G	A	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	3806664	rs7219732	T	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	3807044	rs740794	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	3808032	rs2074989	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	3808713	rs2074988	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	3818620	rs10852862	T	C	10439.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr17	3818788	rs2875751	G	A	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	3818830	rs2325788	A	G	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	3819002	rs11078475	T	C	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	3844985	rs17846890	A	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	3845927	rs17846889	A	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	3846732	rs9913158	C	T	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	3846802	rs758641	A	G	8966.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	3846899	rs757611	C	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	3848013	rs1800911	A	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	3848153	.	GTCCGCCTCTTGGCCCCGCCCCTAGGAGGGGGC	G	875.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	3850876	rs9915542	G	A	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	3853974	rs201357601	G	C	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	3854489	.	TA	AT	1077.77	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.16;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3854840	rs2302298	G	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:4,47:0.92:51
chr17	3856615	rs1800915	A	G	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr17	3867571	rs887384	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	3916823	rs8075562	G	A	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr17	3921307	rs2247194	C	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	3922918	rs711178	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3935370	rs968114	G	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3936043	rs17175962	C	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	3947533	rs1006954	G	A	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr17	3947644	rs781831	T	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	3953083	rs781853	T	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	3953102	rs781852	A	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	3957601	rs113189199	G	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	3961489	rs781839	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	3962428	rs34838830	A	AT	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	3966064	rs781825	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	3968149	rs71383514	G	GA	385.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.468;QD=11.69;ReadPosRankSum=3.002;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr17	3969527	rs9892466	T	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	3976075	rs781820	C	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	3977411	rs112438340	G	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	3980318	rs897026	T	C	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	3981148	rs8074454	G	C	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	3985864	rs8068804	G	A	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	3989669	.	G	A	300	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=13;NR=0;PP=300;QD=25.7516317344;SC=TTCCCACAGCGGCAATCCCTT;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=13;WE=3989677;WS=3989659;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	3989997	rs111274472	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	3991943	rs67005107	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	4005770	rs1869493	T	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	4027047	rs7225521	A	G	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	4027152	rs7214284	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	4027392	rs7208760	G	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	4027411	rs7214779	T	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	4045809	rs4239043	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	4046101	rs1454121	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	4046270	rs1454122	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	4071302	rs4790583	G	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	4071326	rs4790178	C	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	4074261	rs897030	A	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	4077485	rs4790585	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	4088291	rs2020118	C	T	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	4098573	rs5818941	A	AT	2804.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:9,133:0.94:142
chr17	4166804	rs2325881	C	T	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	4192401	.	TAC	T	105.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr17	4337283	rs35751906	G	A	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	4337412	rs3809853	C	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	4350182	rs2047233	T	C	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	4350367	rs2047232	A	G	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	4350373	rs3055435	GGT	G	5757.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr17	4350407	rs2047231	G	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	4351396	rs6502786	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	4351560	rs12450838	G	A	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	4351640	rs884250	G	A	11027.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr17	4352457	.	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr17	4352539	rs7224464	C	T	8653.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr17	4391132	rs2291743	C	T	14723.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:2,356:0.99:358
chr17	4391153	rs333122	A	G	13715.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr17	4391201	rs2291742	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr17	4391217	rs143303039	C	G	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4402803	rs184566	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	4433962	rs61743835	G	A	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	4436005	rs9892232	T	C	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	4437214	rs4790202	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr17	4439313	rs1077200	A	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	4439501	rs1076071	C	G	13063.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:2,509:1.00:511
chr17	4439532	rs1076072	T	C	19081.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,750:1.00:750
chr17	4440907	rs34901192	A	G	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	4447969	rs368743844	ACGGGGGTGGGCGCACAGGGAGG	A	2698.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:4,89:0.96:93
chr17	4448296	rs114480019	C	G	11046.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:1,420:1.00:421
chr17	4455500	rs7206974	T	C	12665.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=0.458;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:2,497:1.00:499
chr17	4458302	rs1871348	C	A	11609.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	4458314	rs1871347	C	T	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	4463023	rs11657054	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	4495682	rs4790654	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	4498656	rs59211026	C	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	4498682	rs4790655	C	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	4500072	rs9906333	A	G	96.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	4513974	rs111699059	A	AAAAG	3673.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr17	4535385	rs2619112	A	G	11821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=-1.011;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,445:1.00:446
chr17	4535413	rs6502804	T	C	11231.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=1.805;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,434:1.00:435
chr17	4541744	rs899452	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.58;QD=28.80;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	4544729	rs9906597	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	4544978	rs369435246	G	GAGA	2346.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	4575283	rs3862485	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	4577112	rs11658808	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	4578007	rs4790673	C	G	13569.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	4579638	rs8071990	G	A	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	4580137	rs6502806	A	G	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr17	4580224	rs11078530	C	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	4586253	rs34352526	GA	G	1778.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	4594847	rs7226084	T	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	4618472	rs16954146	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	4620497	rs7208257	C	T	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	4622077	rs11463798	C	CT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.272;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr17	4623666	rs34556580	C	T	13853.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr17	4638010	rs3744700	T	G	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	4644491	rs9903643	A	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	4646772	rs73973614	A	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	4647002	rs8082690	A	G	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	4647044	rs58209386	C	T	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr17	4648262	rs58866259	T	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	4649030	.	G	GCCCCTGGGAGCCCCGA	1367.73	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	4686340	rs3853643	TT	GG	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	4688996	rs2279962	A	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:4,76:0.95:80
chr17	4693054	rs12951761	G	A	13358.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr17	4693170	rs34850425	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	4693342	rs35910358	C	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	4693508	rs34421346	G	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	4699947	rs2241933	T	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	4700695	rs76289772	AG	A	4854.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	4712395	rs1132446	A	T	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	4713981	rs7212512	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	4714021	rs3081314	G	GGAAA	3940.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.36;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	4720131	rs2302325	C	G	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	4722133	rs3764900	C	T	7140.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-1.315;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:2,280:0.99:282
chr17	4722299	rs2326097	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	4722606	rs3764899	G	A	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	4750525	rs59076401	G	GTTCA	981.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	4758174	rs73341669	C	A	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	4764241	rs116002616	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	4784181	rs138142152	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	4788971	rs116006193	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr17	4796274	rs11556634	T	C	8415.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	4796286	rs11556635	C	T	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	4799236	rs2270158	C	T	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr17	4800290	rs2302317	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr17	4800304	rs2302316	G	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr17	4801887	rs12936083	A	G	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	4801970	rs12940036	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	4802329	rs33978919	G	A	7744.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	4803711	rs35400274	G	A	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	4804073	rs12942540	G	C	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	4835895	rs2243093	T	C	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	4837171	.	GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA	G	3147.73	.	AC=2;AF=1.00;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	1/1:3,120:0.98:123
chr17	4837952	rs199616811	A	AG	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	4847849	rs7223795	C	T	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr17	4858311	.	T	C	649.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	4858823	rs75748087	G	A	7756.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	4859102	.	T	TTGTCTCTGCTC	2116.73	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	4863410	rs238224	A	G	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4875566	rs238230	T	C	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:3,378:0.99:381
chr17	4876675	rs146651734	C	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	4877120	rs238229	G	A	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	4877913	rs148150425	C	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	4880320	rs16954309	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	4882952	rs1859434	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	4883818	rs238234	C	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	4886037	rs238232	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	4890843	rs8071428	T	C	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	4893357	rs427703	G	C	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	4906146	rs146311497	GCC	G,GC	1175.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/1:1.00:34
chr17	4908378	rs73345319	G	A	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	4926126	rs35748479	C	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	4926882	rs346828	A	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	4936336	rs72822610	A	T	10325.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	4936972	rs346821	G	A	6848.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	4937575	rs346822	T	C	11889.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr17	4937982	rs346824	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	5013095	rs73976309	G	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	5034048	rs11871054	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	5036152	.	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=6.470;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.011;QD=1.66;ReadPosRankSum=-2.745;SOR=2.121;set=HC	GT:AD:AF:DP	0/1:53,7:0.12:60
chr17	5036161	rs73976312	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.603;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.298;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-7.541;QD=1.72;ReadPosRankSum=-1.957;SOR=2.008;set=HC	GT:AD:AF:DP	0/1:72,11:0.13:83
chr17	5036191	rs75631218	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.625;QD=1.87;ReadPosRankSum=-1.419;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:119,28:0.19:147
chr17	5036205	rs80328123	A	C	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=8.602;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.983;QD=8.26;ReadPosRankSum=-2.050;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:150,49:0.25:199
chr17	5036210	.	TC	GT	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=7.092;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-7.965;QD=8.07;ReadPosRankSum=-1.555;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:156,51:0.25:207
chr17	5036214	rs114647990	C	T	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=8.211;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-7.957;QD=8.45;ReadPosRankSum=-1.071;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:159,52:0.25:211
chr17	5036224	rs72830922	C	G	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-7.479;QD=8.15;ReadPosRankSum=-1.739;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:173,67:0.28:240
chr17	5036274	rs78465432	C	A	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-6.480;QD=9.96;ReadPosRankSum=3.690;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:191,82:0.30:273
chr17	5036281	rs76236903	G	C	2724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-5.463;QD=10.81;ReadPosRankSum=3.460;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:173,79:0.31:252
chr17	5036329	rs72830923	A	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:96,53:0.36:149
chr17	5036383	rs76207017	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr17	5042346	rs11870506	C	A	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	5042422	rs4080179	G	A	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	5042894	rs8073787	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	5044640	.	T	TA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=1.48;ReadPosRankSum=1.512;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr17	5058638	rs147400050	CA	C	5029.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	5084763	rs1689965	G	A	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	5268356	rs71151866	TAA	TA,T	298.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/1:0.95:21
chr17	5308308	rs8067757	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	5328659	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.594;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr17	5336509	rs200276588	T	TA	2309.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:7,111:0.94:118
chr17	5421005	rs56750129	TC	AA	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	5424129	rs12946467	C	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	5424376	rs12944976	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	5425077	rs11651270	T	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	5436263	rs2301582	C	T	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	5984445	rs143677339	C	G	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr17	6014176	rs2302837	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	6329954	rs62637018	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	6330068	rs2292546	T	C	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr17	6330153	rs925616	C	T	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr17	6330165	rs115341523	A	T	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	6330455	rs139767358	CT	C	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	6331582	rs116170538	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	6331803	rs8075035	T	C	5857.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr17	6331836	rs12453262	T	G	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	6331914	rs75839062	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	6337190	.	A	AGCCCAGAAAAGACTAGTCCCAGGAGACAG	811.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=67.64;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	6338224	rs200574696	G	GT	85.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	6338289	rs183510560	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	6348823	rs7220100	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	6349444	rs111825381	TC	T	2581.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.88;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	6349565	rs56120113	G	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	6350727	rs12947546	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	6352863	rs34107703	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	6353679	rs7218283	A	C	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	6358979	.	G	GAGGGC	1362	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5034;HP=3;HapScore=1;MGOF=21;MMLQ=28;MQ=59.42;NF=0;NR=23;PP=1362;QD=59.7391304348;SC=GAGGGCAGGGGAGGGCAGGGG;SbPval=1.0;Source=Platypus;TC=35;TCF=0;TCR=35;TR=23;WE=6358997;WS=6358969;set=Platypus	GT:AD:AF:DP	0/1:12,23:0.66:35
chr17	6358988	.	G	GCA	1951.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;MQRankSum=0.507;QD=36.83;ReadPosRankSum=1.056;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr17	6358989	.	G	C	916	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=3;HapScore=1;MGOF=21;MMLQ=28;MQ=59.52;NF=10;NR=28;PP=916;QD=25.020295067;SC=GAGGGCAGGGGAGGGCAGGGC;SbPval=0.56;Source=Platypus;TC=38;TCF=10;TCR=28;TR=38;WE=6358997;WS=6358969;set=Platypus	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	6358989	.	G	GGGC	2043.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;MQRankSum=0.507;QD=38.56;ReadPosRankSum=1.198;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr17	6364753	rs11654099	A	G	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	6364881	rs73346359	T	C	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	6366998	rs113292877	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	6377945	rs115037070	A	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr17	6441164	rs165106	T	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	6483046	rs3744720	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	6493056	rs367918	T	C	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	6493198	rs1443417	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	6499498	rs73342622	G	A	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	6515387	rs2289642	A	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	6524358	rs8074991	G	A	60.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	6531648	rs2072149	A	G	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	6538355	rs2301873	G	A	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	6544354	rs111501451	C	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	6544465	rs34720503	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	6546259	rs2285999	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	6553410	.	T	TA	54	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=11;HapScore=3;MGOF=25;MMLQ=27;MQ=60.12;NF=3;NR=3;PP=54;QD=10.5;SC=TGAAAAGCATTAAAAAAAAAA;SbPval=0.16;Source=Platypus;TC=25;TCF=6;TCR=19;TR=6;WE=6553418;WS=6553400;set=Platypus	GT:AD:AF:DP	1/0:19,6:0.24:25
chr17	6555225	rs73351900	G	T	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	6555546	rs56268735	C	CG	10154.73	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:2,396:0.99:398
chr17	6596497	.	A	AAC	337.73	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr17	6661584	rs4796550	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	6662948	rs3833979	G	GGT	299.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr17	6663144	rs71157213	CT	C	2284.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	6663666	.	C	CA	64	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=20;HapScore=2;MGOF=73;MMLQ=24;MQ=57.07;NF=4;NR=1;PP=64;QD=13.4;SC=GACTCTGTCTCAAAAAAAAAA;SbPval=0.59;Source=Platypus;TC=6;TCF=5;TCR=1;TR=5;WE=6663674;WS=6663656;set=Platypus	GT:AD:AF:DP	1/1:1,5:0.83:6
chr17	6663753	rs34195599	A	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	6663895	rs2271231	C	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	6683871	rs10401001	C	A	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	6716385	rs8081510	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	6719044	rs113813807	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	6733672	rs8078571	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	6943266	rs4796576	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	6979609	rs199919890	C	CCTTT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.500;MQ=61.73;MQRankSum=0.548;QD=4.66;ReadPosRankSum=0.913;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr17	6981353	rs732828	G	C	12853.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr17	6981397	rs90951	A	G	8711.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	7010403	rs61731747	G	A	13265.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	7011225	rs61731746	T	G	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	7011722	rs62061385	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	7077214	rs147127857	T	C	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	7077822	rs114113707	C	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7077931	.	TACAC	T	53.70	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	7080111	.	TCACACACA	T,TCA	6312.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;QD=38.97;SOR=1.056;set=HC	GT:AD:AF:DP	1/2:1,26,135:0.16,0.83:162
chr17	7080489	rs183814527	C	A	17743.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=-4.055;QD=25.87;ReadPosRankSum=1.793;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,683:1.00:686
chr17	7080508	rs3215126	T	TCCCTG	26486.73	.	AC=2;AF=1.00;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.82;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr17	7094282	.	CTTTTTTTTT	C	529.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.577;QD=31.16;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	7111624	rs178471	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	7121785	rs2521985	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	7127718	rs17671352	T	C	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	7129840	rs35594616	T	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	7129974	rs2074222	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	7132556	rs222837	C	T	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr17	7139165	rs146433176	GA	G	5407.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr17	7139238	rs222851	G	A	14154.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr17	7139412	rs61737789	G	A	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	7140606	rs222852	A	G	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7145492	rs58574748	C	CA	7285.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	7150552	rs2074217	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	7150574	rs73235891	A	C	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	7154460	rs200552437	TGTCCCCAACACCGCCAGAC	T	16016.73	.	AC=2;AF=1.00;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	1/1:10,662:0.99:672
chr17	7154534	rs414206	G	A	12220.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.199;QD=26.17;ReadPosRankSum=1.524;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:2,465:1.00:467
chr17	7156447	rs2074219	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	7158128	.	ACCCCTCC	A	2963	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=4;HapScore=1;MGOF=96;MMLQ=27;MQ=59.89;NF=35;NR=134;PP=2963;QD=20;SC=TCCTGGTGAGACCCCTCCTTC;SbPval=0.23;Source=Platypus;TC=222;TCF=38;TCR=184;TR=169;WE=7158142;WS=7158116;set=Platypus	GT:AD:AF:DP	0/1:53,169:0.76:222
chr17	7158164	rs147213620	CTGCCAAGGAGTG	C	15951.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	7158203	rs402514	T	G	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	7158258	rs55999520	GT	G	833.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.471;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:14,67:0.83:81
chr17	7161956	rs78782818	G	A	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	7163739	rs4562	A	G	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	7165001	rs143827220	GC	G	1494.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr17	7165044	rs115784361	C	A	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	7185788	rs222848	T	C	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.86;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	7185861	rs222849	T	C	12626.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr17	7187123	rs5435	T	C	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr17	7210352	rs9904081	G	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	7210448	rs183824855	G	A	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	7214824	rs11658072	C	T	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	7216763	rs8076120	C	T	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	7217463	rs2292064	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	7218482	.	G	T	172.80	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	7221385	rs1127440	G	A	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	7221544	rs7222233	T	C	5159.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-1.133;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,198:0.99:200
chr17	7221707	rs7216490	G	T	13652.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr17	7221726	rs112774750	C	T	16412.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr17	7224319	rs3809811	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	7225425	rs2062771	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	7228469	rs66468923	GC	G	33.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.46;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr17	7230738	rs187911149	C	A	15337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.110;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=0.055;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:2,602:1.00:604
chr17	7245674	rs8069505	G	A	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr17	7246940	rs3809829	T	G	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	7251605	rs2292066	G	C	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	7253659	rs2292068	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr17	7254602	rs66687178	T	G	12225.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr17	7259083	rs144825300	A	AG	1320.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	7286326	rs1554948	T	A	5090.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	7292107	rs6503018	G	A	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	7293715	rs3744549	C	T	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	7297452	rs4613118	A	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	7307103	rs56134360	ACC	A	3715.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	7307287	rs9900153	T	C	13907.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,532:1.00:534
chr17	7317647	rs60631713	A	AC	6338.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	7318396	rs2241233	C	T	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	7318559	rs6503019	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7320142	rs3752031	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	7321067	rs62061175	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	7326835	.	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.873;QD=1.99;ReadPosRankSum=-0.458;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr17	7385174	rs8065577	G	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	7400041	rs9890920	C	T	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	7400137	rs9898024	T	C	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	7401335	rs111845660	G	GGCTCTGGGGT	3984.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	7402556	rs2277638	G	A	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	7402600	rs2228129	T	C	11424.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	7403942	rs12936464	A	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	7404107	rs7217707	T	C	11596.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	7404209	rs6503030	G	A	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	7404991	rs2228130	T	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	7405074	rs8075218	C	T	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr17	7406343	rs9890028	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	7411855	rs4796432	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	7412212	rs9889368	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	7413020	rs60621306	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	7413120	rs7218412	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	7414958	rs2071502	G	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	7416683	rs9894023	A	G	48879.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=1964;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.016;QD=25.46;ReadPosRankSum=2.344;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:2,1918:1.00:1920
chr17	7417086	rs4344809	G	A	28412.77	.	AC=2;AF=1.00;AN=2;DB;DP=1097;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.21;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,1084:1.00:1084
chr17	7417551	rs9533	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	7452906	rs74578413	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	7452977	rs9899183	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	7460559	rs4968189	T	G	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	7462657	rs142700143	T	TG	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	7463644	rs72154130	TCAA	T	3923.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	7470285	rs58837213	CA	C	4713.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	7474277	rs4968213	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	7474539	rs28625968	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	7477938	rs1057086	G	C	185.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.90;ReadPosRankSum=1.602;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	7499382	rs858526	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	7557419	rs1642763	A	G	10091.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	7557834	rs1642764	C	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	7565336	.	AAG	A	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.083;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr17	7578115	rs1625895	T	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	7578382	.	G	C	4990.77	.	AC=2;AF=1.00;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	7578645	rs2909430	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	7579548	rs1800371	G	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	7579643	rs146534833	CCCCCAGCCCTCCAGGT	C	6989.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:3,266:0.99:269
chr17	7579801	rs1642785	G	C	9266.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.60;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	7580500	rs12944939	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	7580564	.	G	T	3010.77	.	AC=2;AF=1.00;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	7592168	rs2287499	C	G	9413.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	7604183	rs115388376	C	A	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	7606722	rs7640	C	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:12,231:0.95:243
chr17	7646166	rs2642160	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	7721231	rs9916791	T	C	11072.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr17	7721821	rs1106826	G	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	7722365	rs7213894	C	T	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	7726665	.	CAG	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.381;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr17	7733555	rs7405476	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	7750177	rs61462443	T	TACC,TACCACC	13415.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.144;QD=41.79;ReadPosRankSum=-1.376;SOR=0.872;set=HC	GT:AD:AF:DP	1/2:4,24,293:0.07,0.91:321
chr17	7756255	rs149078689	C	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	7788145	.	CGAG	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.962;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr17	7788409	rs201772788	C	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	7794202	rs12450454	C	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	7796897	rs57946102	T	A	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	7806529	rs7222046	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr17	7808061	.	G	A	787.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	7811998	rs4239111	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	7852887	rs7217194	T	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	7906426	rs9905402	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	7915920	rs56130505	G	A	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	7917279	rs8069344	T	A	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr17	7918119	rs12103471	G	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	7919931	rs12103519	T	C	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:4,314:0.99:318
chr17	7942434	rs73972649	A	G	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7948175	rs6503070	C	T	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:3,272:0.99:275
chr17	7950377	rs11541083	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	7950952	rs9898751	C	A	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	7951819	rs4792147	A	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	7960380	rs8072641	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	7960625	rs9896256	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	7961129	rs7214975	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	7977105	rs12937410	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	7979463	rs2289586	A	G	14139.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr17	7983799	rs2304907	A	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	7983969	rs2304908	G	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	7990565	.	C	CACACACACAG	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.934;QD=8.13;ReadPosRankSum=1.663;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr17	7990567	.	C	CACACACAG	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=15.508;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.506;QD=0.85;ReadPosRankSum=2.454;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr17	7990577	rs7504003	G	C	4301.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=34.97;ReadPosRankSum=1.735;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr17	7991330	rs9909784	T	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	7991628	rs9903712	C	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	8012511	rs3027205	T	C	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	8013394	rs58194728	AC	A	4673.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	8015579	rs894505	G	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	8019125	rs3027218	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	8022065	rs3027232	G	A	12997.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:2,501:1.00:503
chr17	8027318	rs1372869	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	8045060	.	CT	C	2656	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=8;HapScore=1;MGOF=9;MMLQ=27;MQ=59.78;NF=39;NR=43;PP=2656;QD=20;SC=GAGCTCAATTCTTTTTTCTCC;SbPval=0.48;Source=Platypus;TC=98;TCF=45;TCR=53;TR=82;WE=8045068;WS=8045050;set=Platypus	GT:AD:AF:DP	1/1:16,82:0.84:98
chr17	8046772	rs2585405	C	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	8048169	rs2253820	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	8048283	rs2735611	G	A	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	8050737	rs885747	G	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	8052525	rs147233293	CAAAAACA	C	1810.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.763;MLEAC=2;MLEAF=1.000;MQ=62.55;MQRankSum=1.075;QD=34.82;ReadPosRankSum=1.734;SOR=1.901;set=HC	GT:AD:AF:DP	1/1:3,49:0.94:52
chr17	8135061	rs3027238	T	C	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	8138503	rs75790638	C	T	7807.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	8139327	rs4791626	A	G	8366.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	8141707	rs6503093	T	C	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	8151163	rs9900520	A	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	8192922	rs869773	C	T	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	8215534	rs3744651	C	T	29705.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=1.022;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,1134:1.00:1136
chr17	8216468	rs871841	T	C	21551.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.78;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,836:1.00:836
chr17	8216737	rs2302867	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	8219478	rs2270445	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	8275001	rs2909439	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	8283379	rs409445	C	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=25.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	8296383	rs12601362	C	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	8296440	rs12601265	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	8339103	rs8065181	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	8339283	rs3744652	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	8339307	rs8064417	G	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.62;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	8349984	.	T	TC	197	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=7;HapScore=2;MGOF=149;MMLQ=18;MQ=60.0;NF=6;NR=0;PP=197;QD=36.3333333333;SC=TTCCTTGGGTTCCCCCCCACC;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=6;WE=8349992;WS=8349974;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	8383253	rs4791316	G	C	99.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	8383344	rs3215073	G	GC	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	8383894	rs6503120	A	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	8384875	rs904417	T	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8387438	rs113838551	G	GATGA	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	8390655	rs7219356	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8393900	rs2270744	G	C	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	8393979	rs2270743	C	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8395894	rs904416	T	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	8396010	rs3744653	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	8397315	rs2277670	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	8412133	rs9889907	A	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	8413358	rs145464629	A	ATT	830.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.481;QD=21.30;ReadPosRankSum=-0.915;SOR=0.643;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr17	8416901	rs11374	C	T	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr17	8417006	rs66631876	GT	G	2444.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:31,161:0.84:192
chr17	8424270	rs8067456	G	A	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	8449716	.	T	TA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.327;QD=3.79;ReadPosRankSum=0.813;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr17	8449767	rs4791724	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	8451744	rs57472344	GA	G	135.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8455532	rs883811	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	8473182	rs422173	G	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	8478586	rs10573578	CAAT	C	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	8478605	rs268460	C	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	8647015	rs9893451	G	A	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	8647181	rs9902109	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.95;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	8647337	rs7218546	A	G	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	8656851	rs56985159	G	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8659114	rs62069167	G	A	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	8661641	rs72848106	C	T	8278.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	8701116	rs2242374	G	A	9657.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr17	8701799	rs17854013	G	T	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr17	8707534	rs7209143	G	C	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	8725008	rs191432768	G	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	8725214	rs56322041	A	AG	7914.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr17	8725820	rs59338144	A	G	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	8725874	rs75136733	T	C	12862.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:2,504:1.00:506
chr17	8726022	rs117881973	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	8726160	rs2074258	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	8726251	rs142633587	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	8726899	rs192530188	C	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	8727002	.	G	C	167.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	8732382	rs72848129	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	8732391	rs72012584	TAC	T	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	8732852	rs72848133	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	8732918	.	T	TAC	6206.73	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr17	8732939	.	G	GCACACAGA	9700.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;MQRankSum=-0.147;QD=48.99;ReadPosRankSum=-1.036;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:2,196:0.99:198
chr17	8738575	rs1005898	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	8739821	rs12948724	G	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	8741875	rs144468168	A	G	12944.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr17	8785087	rs9903447	A	C	40648.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.82;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,907:1.00:907
chr17	8785092	rs9902600	C	T	40647.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.38;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,916:1.00:916
chr17	8787847	rs436193	G	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	8787955	rs436384	T	C	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	8788154	rs454347	C	A	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	8789718	rs112743807	G	A	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	8791075	rs449373	T	C	1056.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.108;QD=23.48;ReadPosRankSum=2.244;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr17	8792029	rs381309	A	G	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	8792514	rs394811	G	A	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	8793905	rs365024	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	8794002	rs364676	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8794014	rs381198	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	8808348	rs139803775	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	9083081	rs9907119	C	T	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	9083377	rs9906162	G	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	9083395	rs9906347	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	9086228	rs2302196	C	A	18955.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,742:1.00:742
chr17	9086293	rs2302197	G	C	13626.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr17	9086561	rs16957995	C	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	9086676	rs16957998	T	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	9086708	rs62068199	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	9086743	rs62068200	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	9154103	rs2072322	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	9154116	rs200293848	CGCT	C	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	9395034	rs7222078	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	9408290	.	C	CAAAAAAAAAAA	293.75	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=41.96;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	9472728	rs73975733	T	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	9472792	rs73975734	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	9479048	rs7210038	T	C	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	9479051	rs9889912	G	A	9625.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	9479064	rs9891626	C	T	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	9479364	rs6503230	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	9479877	rs16958487	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	9538649	rs418706	G	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	9546551	rs274899	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	9586165	rs12453943	C	T	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	9590243	rs148093920	CGT	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.439;QD=1.45;ReadPosRankSum=-1.079;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:81,13:0.14:94
chr17	9590267	rs73975790	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr17	9680451	rs2272033	T	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	9683087	rs11078817	G	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	9712092	rs56256681	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	9712255	rs9908677	G	A	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	9714009	rs4079466	C	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	9725101	rs8067929	G	A	17054.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:1,662:1.00:663
chr17	9725338	rs8068308	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=2.564;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	9725347	rs8070074	A	G	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=2.348;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	9729645	rs2047665	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.64;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	9729649	rs2047666	A	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	9760716	rs2293100	G	T	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	9760892	rs61730821	A	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	9764531	rs2001486	A	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	9768941	rs756224	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	9769062	rs73974316	T	A	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr17	9769199	rs756223	T	C	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	9769278	rs4791896	G	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	9783566	rs4791903	G	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	9783855	rs2277690	A	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	9791159	rs2240737	G	A	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	9792634	rs4791904	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr17	9801299	.	ATG	A	43	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=24;MQ=59.64;NF=2;NR=1;PP=43;QD=17.0;SC=CCTGGGGTGGATGTGTGTGTG;SbPval=0.7;Source=Platypus;TC=18;TCF=12;TCR=6;TR=3;WE=9801308;WS=9801298;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr17	9820695	rs4791910	C	T	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	9820739	rs11078821	A	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	9820831	rs16958993	C	A	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	9821585	rs9916639	T	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.69;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	9821614	rs61532416	G	GA	2141.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	9821618	rs55976773	T	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	9830171	rs56199323	C	T	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	9843565	rs78133171	C	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	10204176	rs151072379	CG	C	3841.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	10205047	rs62060457	C	G	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	10205067	rs2008528	C	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	10214628	rs2074867	C	T	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	10215839	rs73283680	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	10254197	rs2108568	A	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	10258153	rs3214260	GT	G	1856.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr17	10258155	rs5010940	T	C	1865.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr17	10314375	rs12601552	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	10314395	rs12601678	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	10317831	rs4791406	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	10317842	rs4791407	A	G	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	10318636	rs8068729	A	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	10319148	rs7216301	A	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	10346781	rs3744554	T	C	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	10348354	rs2277649	T	C	6770.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	10348705	rs3833153	A	AGAAGC	3556.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	10355371	rs11651295	C	T	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	10355763	rs917361	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	10356816	rs3744557	C	G	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	10360016	rs2041123	C	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	10362746	rs2058099	A	G	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr17	10363410	rs3744561	A	G	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr17	10364191	rs1029665	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	10399897	rs3744563	A	G	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	10411335	rs68047947	G	GT	1681.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=-0.400;QD=18.28;ReadPosRankSum=-0.530;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:5,87:0.95:92
chr17	10411370	rs4791995	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	10411397	rs4791996	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	10411632	rs35152572	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	10411957	rs147545214	C	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	10414284	rs8082000	C	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	10415840	rs2007027	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	10418275	rs1017068	T	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	10424897	.	C	CATAT,CAT	127.82	.	AC=1,0;AF=0.500,0.00;AN=2;DP=12;set=Intersection	GT:AF:DP	0/1:0.80:5
chr17	10427924	rs1042236	G	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	10431275	rs12952334	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	10431877	rs11372676	A	AT	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	10432638	rs2277651	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	10434925	rs3744565	T	C	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	10435325	rs11379780	G	GA	141.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	10442977	rs2277653	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	10446182	rs719277	C	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	10446508	rs11078849	T	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	10446877	.	G	T	178.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	10448769	rs11078850	A	T	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr17	10450816	rs12600539	T	C	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	10589898	rs10712779	CA	C	33.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=2;MLEAF=1.000;MQ=59.28;MQRankSum=-0.319;QD=4.23;ReadPosRankSum=-0.272;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr17	10595388	rs2520178	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	10633245	rs202312	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	10633321	.	C	CG	807.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	11455359	rs2969191	C	T	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	11459012	rs1030055	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	11502403	rs8079566	G	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	11511412	rs4792156	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	11513661	rs2191072	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	11522764	rs10852799	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	11523082	rs9892256	A	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	11532613	rs9896886	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	11532835	rs9895535	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	11555990	rs4792159	T	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	11572650	rs199690396	C	T	10859.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr17	11583089	rs8071438	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	11604598	rs7214186	T	A	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	11622494	rs12945437	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	11648332	rs3744578	C	T	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	11648444	rs3744580	T	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	11651057	rs3744581	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	11660158	rs16945294	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	11660722	rs11078030	G	T	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	11660769	rs77382068	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	11671913	rs2277658	G	C	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	11684571	rs2277659	G	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	11715110	rs1859890	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=23.99;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	11737895	rs57971270	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	11738227	rs56260572	G	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	11778577	rs11396360	G	GC	1473.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	11787975	rs11078042	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr17	11795158	rs16945431	G	A	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	11797651	rs16945437	A	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	11806266	rs3815269	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	11827112	rs28622261	GC	AA	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	11827353	rs2286300	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	11935794	rs201172820	C	CT	60	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	12011406	rs4792218	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	12013527	rs28923220	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	12647408	rs8073291	A	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	12656052	rs28730823	G	A	12470.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.53;ReadPosRankSum=1.212;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:2,468:1.00:470
chr17	12798396	rs72813190	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	12812343	rs66643297	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr17	12820421	rs35221864	T	C	108.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	12820646	rs7210937	G	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	12822892	rs3826375	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	12822905	rs3826374	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	12823271	rs56974323	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	12855719	rs2072253	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	12856039	.	CTTTTTTTTTTTTTTT	C	1104	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=21;HapScore=1;MGOF=21;MMLQ=20;MQ=54.83;NF=0;NR=3;PP=1104;QD=369.0;SC=TGCATGGTCTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=12856061;WS=12856029;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr17	12860183	.	A	AACAC,AAC	276.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:6
chr17	12897127	rs7217826	G	A	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	12898994	rs2286338	C	G	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	13399486	rs11385090	A	AT	2038.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.253;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=-0.523;SOR=0.519;set=HC	GT:AD:AF:DP	1/1:12,106:0.90:118
chr17	13928093	rs62052313	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-2.065;QD=8.13;ReadPosRankSum=1.671;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:33,28:0.46:61
chr17	13972811	rs6502330	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	13977813	rs143814384	C	CTTTA	1528.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	14005373	rs1017076	C	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	14005386	rs2108683	T	C	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	14005439	rs2159132	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	14063292	rs16949103	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	14063389	rs7212977	G	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	14095309	rs2230354	A	G	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	14095566	rs151441	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:217,62:0.22:279
chr17	14095639	rs373313742	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.262;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=20.733;MLEAC=1;MLEAF=0.500;MQ=47.96;MQRankSum=-0.843;QD=4.51;ReadPosRankSum=-4.793;SOR=1.834;set=HC	GT:AD:AF:DP	0/1:131,51:0.28:182
chr17	14095682	rs2158978	T	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	14110236	rs2230355	G	A	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	14139414	rs146117581	C	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr17	14139565	rs4791563	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr17	14139774	rs4791564	C	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.63;QD=25.82;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	14139888	rs11650811	C	T	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=-2.123;QD=6.07;ReadPosRankSum=0.548;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:140,80:0.36:220
chr17	14139891	rs62052131	A	C	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.05;QD=32.17;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	14140103	rs4792453	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	15134175	rs13422	T	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	15142945	rs77406217	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	15154966	rs66507245	T	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	15155057	rs3826362	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	15162389	rs231020	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	15207364	rs13961	T	G	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	15215588	rs8071713	C	T	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr17	15215790	rs6502446	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	15222535	rs11387328	C	CA	77	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	15341022	rs2954757	TT	GC	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	15341183	rs2954759	A	C	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	15342305	rs2906988	G	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	15342590	rs10707095	TA	T	662.82	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:5,40:0.89:45
chr17	15342606	rs2906987	G	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	15342653	rs2954761	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=23.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	15343524	rs71150251	C	CCTT	7844.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.57;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	15343740	rs2954764	T	C	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	15406123	.	CCT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.305;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr17	15443734	rs200768112	A	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.80;QD=45.12;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	15443742	rs138309602	C	G	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.39;QD=43.29;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	15458722	rs148282820	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr17	15469278	rs201538928	C	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.69;QD=24.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	15477358	rs236801	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	15477417	rs28420774	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.54;QD=24.67;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	15492409	rs151442	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.94;QD=28.98;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	15492426	rs28445278	C	T	792.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.207;MLEAC=2;MLEAF=1.000;MQ=49.39;MQRankSum=1.672;QD=21.41;ReadPosRankSum=2.458;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr17	15496777	rs146110909	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	15499737	rs762697	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	15499812	rs7218951	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.69;QD=30.56;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	15500031	rs3217025	GA	G	2284.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr17	15508521	rs2190756	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.85;QD=25.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	15516147	rs200120591	C	CA	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:19,113:0.86:132
chr17	15516157	rs201310265	C	A	2578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=29.276;MLEAC=2;MLEAF=1.000;MQ=59.84;MQRankSum=6.547;QD=19.54;ReadPosRankSum=2.055;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:11,121:0.92:132
chr17	15517060	.	G	GA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQRankSum=-6.990;QD=0.96;ReadPosRankSum=0.454;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:107,29:0.21:136
chr17	15517284	rs200934978	G	C	127.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=43.34;MQRankSum=-2.100;QD=15.97;ReadPosRankSum=-0.180;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	15522903	rs201403935	GA	G	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=45.07;MQRankSum=-1.025;QD=16.64;ReadPosRankSum=-1.593;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	15602900	rs2601942	T	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr17	15602950	rs12449956	G	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr17	15603021	rs12452845	T	C	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-9.925;QD=10.21;ReadPosRankSum=2.164;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:96,42:0.30:138
chr17	15603031	rs12450403	G	T	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-10.007;QD=9.39;ReadPosRankSum=2.736;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:107,42:0.28:149
chr17	15604395	rs77257979	TG	CA	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	15604444	rs4792655	A	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	15611495	rs3760299	T	C	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	15613021	rs2654397	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.28;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	15620647	rs61435333	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.57;QD=27.99;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	15640815	rs201215351	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.65;QD=25.95;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	15642176	rs199916546	G	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	15643382	rs11429009	A	AC	3180.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;MQRankSum=-0.506;QD=17.87;ReadPosRankSum=0.665;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:11,167:0.94:178
chr17	15644392	rs7222367	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	15668250	rs138605095	G	A	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	15668330	rs2955833	G	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	15668720	rs935147	C	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr17	15668775	rs1814454	A	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	15690210	rs376068178	AC	A	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.42;QD=29.36;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	15690793	rs534861	T	C	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	15884227	rs2286796	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	15897285	rs75885533	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=25.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	15907467	rs112911249	G	GA	1539.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr17	15909728	rs3760297	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	15968143	rs2285583	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	16052606	.	CAT	C	98	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=3;MGOF=15;MMLQ=25;MQ=60.0;NF=3;NR=5;PP=98;QD=12.75;SC=AGATTTAAGTCATATATATAT;SbPval=0.41;Source=Platypus;TC=14;TCF=4;TCR=10;TR=8;WE=16052617;WS=16052596;set=Platypus	GT:AD:AF:DP	0/1:6,8:0.57:14
chr17	16221271	rs56228407	A	AC	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	16251859	rs2286666	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	16256240	rs3095172	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	16256686	.	G	GCGGAGGCCC	285.87	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr17	16322676	rs4792739	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	16323608	rs68189233	ATAGT	A	8922.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	16325968	rs8121	A	G	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	16326005	rs1129235	A	C	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	16326253	rs7225104	G	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	16331820	rs4792742	T	C	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr17	16335191	rs34786363	C	A	13637.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:1,526:1.00:527
chr17	16336828	rs7213055	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	16336992	rs14039	C	G	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	16340316	rs7214366	A	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr17	16340405	rs7215836	T	C	82.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	16342813	rs4072454	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	16344314	rs55710649	A	ACT	9100.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	16344600	rs4617905	TG	CC	9834.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	16344875	rs9251	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	16346932	rs4792745	G	T	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	16347567	rs4438345	T	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	16350156	rs1009237	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	16350239	rs2882581	A	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.14;SOR=2.595;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	16351592	rs2351084	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	16456614	rs7224723	T	G	9938.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	16470548	rs16959832	C	T	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	16527795	rs8065506	C	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	16537372	rs60858649	CA	C	1903.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	16537397	rs9911677	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	16550817	rs7218241	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	16552913	rs28626982	C	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	16623497	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-3.256;QD=0.80;ReadPosRankSum=-0.500;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr17	16624049	.	T	C	258.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr17	16664991	rs145983138	G	A	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.02;QD=24.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	16734809	rs2688010	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.20;QD=25.08;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	16734869	rs62074145	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.48;QD=24.96;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	16842912	rs11078355	A	G	12043.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-0.385;SOR=0.244;set=HC	GT:AD:AF:DP	1/1:4,484:0.99:488
chr17	16843911	rs75425006	C	T	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr17	16852027	rs2274892	T	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	16855878	rs8072293	C	T	7477.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	17047002	rs35034705	T	G	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.21;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	17120668	rs4985705	G	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	17122286	rs8065572	C	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	17122327	rs8065832	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	17150391	rs8511	A	C	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	17152363	rs11336908	GA	G	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.932;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr17	17158128	rs71152853	G	GA	425.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=1.318;QD=8.03;ReadPosRankSum=-1.287;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chr17	17168164	rs3182911	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	17179209	rs9892352	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	17179299	rs4985760	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	17184399	rs2012954	A	C	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	17207201	rs7219752	C	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	17209724	rs76597655	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	17209760	rs79668556	A	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	17325093	rs9889949	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	17325181	rs9890753	G	A	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	17326363	rs35590625	G	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	17326604	rs7225976	CA	TG	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr17	17409401	rs3816511	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	17409560	rs7946	C	T	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	17409709	rs1918249	T	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	17410313	.	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	17412032	rs4646407	G	C	6614.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.14;ReadPosRankSum=-0.434;SOR=0.557;set=HC	GT:AD:AF:DP	1/1:5,269:0.98:274
chr17	17480187	rs8068641	A	G	14304.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.56;ReadPosRankSum=-1.636;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:2,319:0.99:321
chr17	17480195	rs2124344	A	G	14745.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.99;ReadPosRankSum=-1.685;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:2,341:0.99:343
chr17	17682484	rs1006656	G	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	17697093	.	CCAGCAGCAG	C,CCAG	4896.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=263;set=Intersection	GT:AF:DP	1/2:0.11,0.84:199
chr17	17698254	rs8067439	G	A	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	17700573	rs4925112	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr17	17700792	rs35686634	C	T	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	17714717	rs11304211	GA	G	155.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.342;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr17	17715317	rs2297508	C	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	17716853	rs56155608	G	A	7970.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=2.182;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:2,311:0.99:313
chr17	17719503	rs7501788	G	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	17719989	rs7214136	C	T	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	17720391	rs2229591	A	G	14139.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:2,550:1.00:552
chr17	17721457	rs4925115	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	17750907	rs7501812	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	17767526	rs34383547	A	AT	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.761;QD=10.72;ReadPosRankSum=0.610;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:8,32:0.80:40
chr17	17770355	rs11657074	G	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	17772622	rs34879782	G	GA	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.868;QD=8.57;ReadPosRankSum=-0.454;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:26,47:0.64:73
chr17	17774118	rs9907287	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	17875407	rs59304093	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	17880877	rs7219320	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	17897739	rs4924832	T	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr17	17919749	rs9913277	G	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	17931496	rs111266938	G	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	17931884	.	C	CA	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.185;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr17	18003671	rs2272570	T	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	18005120	rs80220069	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	18022039	rs854818	A	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	18023897	rs2955365	G	A	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	18024013	rs2955366	A	G	3537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.07;ReadPosRankSum=1.005;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:4,143:0.97:147
chr17	18025226	.	G	GTCACTCCCCCCAAGGATA	7578.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.79;MQRankSum=1.286;QD=38.87;ReadPosRankSum=-1.010;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:8,187:0.96:195
chr17	18025744	rs712268	C	G	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	18030524	rs854793	G	A	8244.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-0.832;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:2,319:0.99:321
chr17	18039075	rs114328138	C	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr17	18039679	rs74372818	C	T	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	18042276	rs2075658	A	C	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	18042527	rs854783	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	18043766	rs854780	C	G	8504.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	18044270	rs854779	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	18046058	rs854778	A	C	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	18046290	rs8065026	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	18046898	rs854777	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	18047671	rs11421905	G	GC	1095.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	18047772	rs11421904	T	TC	5895.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	18051975	rs854774	T	C	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	18052466	rs4303606	A	G	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	18052867	rs2955379	T	C	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	18054702	rs191171943	C	G	15431.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:2,589:1.00:591
chr17	18054868	rs854773	G	T	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	18054917	rs865923	T	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr17	18055229	rs854772	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr17	18057215	rs9916193	C	G	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	18057272	rs712271	A	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	18057907	rs62073602	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	18058365	rs115796504	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	18062710	rs188069918	C	T	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	18070761	rs854796	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	18077175	rs854800	T	C	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	18077187	rs190486507	G	A	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	18098253	rs28694704	C	T	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	18128959	.	C	T	387.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	18133495	rs2290502	G	A	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	18135753	rs2290503	T	C	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	18137141	rs2290505	A	G	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	18137498	rs73288297	G	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	18144115	rs139860810	A	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	18144720	rs2245737	C	T	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	18149854	rs2856289	A	G	11715.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	18150444	.	AC	A	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.657;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr17	18156541	rs2071241	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr17	18164404	rs2605142	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	18167505	rs2605143	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	18174984	rs201088056	T	TC,TCTCACAGCACAGACACAC	1024.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:15
chr17	18174985	.	T	TCACAGCACAGACACACA	1024.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=64.05;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	18178012	rs3215557	C	CG	954.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18181794	rs8071231	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	18184011	rs6502644	G	T	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	18188715	rs7213789	C	T	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	18194362	rs6502645	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18205750	rs66697088	TGGAGAGTGAA	T	1029.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18208334	rs7225932	C	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	18208544	rs7207123	G	A	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18211537	.	CAAAAAAAAAAAAAA	C	638.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	18211984	.	C	CTT	76	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=11;HapScore=2;MGOF=19;MMLQ=17;MQ=60.0;NF=4;NR=0;PP=76;QD=21.25;SC=TGTATATTAGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=4;WE=18211992;WS=18211974;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr17	18217958	rs2230153	C	T	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	18220770	rs1563632	G	A	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	18226177	rs4925171	G	T	17116.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:2,660:1.00:662
chr17	18231998	rs1979276	G	A	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	18232096	rs1979277	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	18239012	rs2273028	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	18259415	rs12950117	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	18284262	rs570145	G	A	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	18286234	rs58499955	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	18286916	.	AGCGGCAG	A,AGGCGGCAG	4229.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=100;set=Intersection	GT:AF:DP	1/1:1.00:97
chr17	18286922	.	A	AG	1681	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=3;HapScore=1;MGOF=4;MMLQ=24;MQ=54.41;NF=5;NR=38;PP=1681;QD=39.3720930233;SC=GGGCAGCGGCAGGGCGGCAGG;SbPval=0.55;Source=Platypus;TC=43;TCF=5;TCR=38;TR=43;WE=18286946;WS=18286906;set=Platypus	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	18286930	rs200680358	A	AG	4189.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.66;QD=45.05;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	18286931	.	GGGCGGCA	G	2251	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=24;MQ=57.59;NF=4;NR=35;PP=2251;QD=58.0256410256;SC=CAGGGCGGCAGGGCGGCAGGG;SbPval=0.56;Source=Platypus;TC=39;TCF=4;TCR=35;TR=39;WE=18286946;WS=18286906;set=Platypus	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	18286938	rs145486982	A	AG	3506.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.17;QD=45.54;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	18291432	rs140944304	TCACAGC	T	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	18291456	rs578670	C	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	18291470	rs586214	C	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	18291544	rs586322	A	G	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr17	18291618	rs586757	C	T	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	18314830	rs62074236	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:91,25:0.22:116
chr17	18314913	rs62074237	T	C	8576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-5.365;QD=13.81;ReadPosRankSum=1.224;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:368,253:0.41:621
chr17	18314964	rs62074238	T	G	12879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=1082;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-16.613;QD=12.08;ReadPosRankSum=-1.566;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:587,479:0.45:1066
chr17	18315107	rs113907775	C	CCT	68425.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=1644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.93;MQRankSum=-1.172;QD=42.87;ReadPosRankSum=-0.815;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:2,1594:1.00:1596
chr17	18380135	rs4924879	C	G	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-3.165;QD=4.21;ReadPosRankSum=-0.062;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:212,83:0.28:295
chr17	18380154	rs1682220	A	G	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-3.723;QD=4.06;ReadPosRankSum=1.369;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:215,84:0.28:299
chr17	18380260	rs77759205	C	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.228;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-6.338;QD=3.97;ReadPosRankSum=0.514;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr17	18387129	.	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=43.69;MQRankSum=-0.717;QD=7.31;ReadPosRankSum=-1.283;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr17	18387192	rs150833554	G	A	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=47.46;MQRankSum=-3.519;QD=6.74;ReadPosRankSum=-1.405;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:95,61:0.39:156
chr17	18390928	rs200433251	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=6.18;ReadPosRankSum=-0.887;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr17	18390993	rs3907320	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.49;MQRankSum=0.373;QD=12.70;ReadPosRankSum=0.084;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr17	18391003	rs3907319	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=43.21;MQRankSum=-0.577;QD=12.07;ReadPosRankSum=0.665;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr17	18395647	.	G	T	2187.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:147,107:0.42:254
chr17	18395992	rs142011239	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr17	18498059	rs66528329	C	CA	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.32;QD=27.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	18498497	rs59933375	G	GA,GAA	1131.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.520;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.62;MQRankSum=-0.513;QD=16.64;ReadPosRankSum=-1.032;SOR=0.619;set=HC	GT:AD:AF:DP	1/2:9,35,24:0.51,0.35:68
chr17	18528623	rs34925025	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	18541296	rs2386412	G	A	343.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=48.32;MQRankSum=1.670;QD=24.56;ReadPosRankSum=-0.795;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr17	18541775	rs9902086	A	G	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.38;QD=26.29;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	18541852	.	ACCCAC	A,AGATGGTGCCCAC	2903.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:53
chr17	18541857	.	C	CGATGGTG	2903.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.74;QD=54.79;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18541868	rs55807264	A	G	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18542074	rs9908833	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	18542432	rs201342024	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.15;QD=27.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	18542519	rs74452761	T	G	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=47.64;MQRankSum=-3.039;QD=10.76;ReadPosRankSum=0.620;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:64,77:0.55:141
chr17	18544520	rs201807927	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.90;QD=30.20;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	18565143	rs55636053	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	18565350	rs9912644	G	C	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	18565423	rs9912852	G	A	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	18574794	rs201620470	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.16;QD=30.49;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	18574872	rs146810330	G	T	6152.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.67;MQRankSum=-0.043;QD=26.07;ReadPosRankSum=-0.730;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:2,234:0.99:236
chr17	18574998	rs9635701	A	T	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr17	18575127	rs9635680	G	A	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.22;QD=40.76;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	18575140	rs9635681	A	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.14;QD=42.95;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	18575492	rs192165192	G	A	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	18575675	rs55797270	T	G	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	18576256	rs4924901	G	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.24;QD=24.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	18602476	rs1969051	A	G	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	18610134	rs1973459	T	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.65;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	18630995	rs8075739	G	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	18638151	rs9916065	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr17	18643642	rs150131079	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.62;QD=25.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	18647539	rs116483657	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.68;QD=30.03;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	18661908	.	T	G	109	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=50.62;NF=0;NR=9;PP=109;QD=15.9745791719;SC=TCTTTTTATATTTAACAGTTT;SbPval=1.0;Source=Platypus;TC=38;TCF=6;TCR=32;TR=9;WE=18661916;WS=18661898;set=Platypus	GT:AD:AF:DP	1/0:29,9:0.24:38
chr17	18673262	rs149142028	C	G	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr17	18682677	.	C	CT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-1.187;QD=7.31;ReadPosRankSum=0.388;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr17	18694277	rs61075345	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	18708830	rs55974180	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=7.307;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=1.940;QD=0.31;ReadPosRankSum=-0.469;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:220,45:0.17:265
chr17	18769349	rs2386404	T	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	18770733	rs2305064	G	A	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	18775900	rs4393623	A	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	18776020	rs7503678	A	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	18780888	rs112755492	GT	G	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	18785883	rs80293494	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18786099	rs79836654	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	18793061	rs3803835	C	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	18793225	rs3826380	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	18814661	rs55971101	T	TTA	2727.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr17	18834021	rs1801755	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	18863979	rs2074274	G	C	8876.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr17	18882991	rs2472714	T	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	18916893	rs11652575	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	18918258	rs28526726	C	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	18920617	rs79284479	C	T	11620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=1.375;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,450:1.00:451
chr17	18997015	rs73982623	T	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.79;QD=34.12;SOR=7.864;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	19216917	rs3826405	T	C	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	19231898	rs7206963	T	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	19232078	rs6587220	T	C	10639.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr17	19233096	rs2296979	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	19240972	rs11652712	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	19314611	rs739830	T	C	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	19314917	rs33912708	CT	C	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=1.793;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,38:0.76:50
chr17	19318031	rs1295330	A	G	9258.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr17	19319374	rs76138388	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr17	19445923	rs12451696	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	19458777	rs2440149	G	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	19476572	rs148651857	T	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	19595540	rs11313767	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.969;QD=2.02;ReadPosRankSum=0.782;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr17	19648219	rs56234923	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.84;ReadPosRankSum=0.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr17	19648271	rs59720526	G	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	19699358	rs192511	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	19699605	rs10587010	CAT	C	834.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr17	19713740	rs150122	C	T	6184.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	19729309	.	A	AT	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	19729312	rs60573446	A	AT	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	19729314	.	A	AATAAATAAAT	54.52	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	19729495	rs157397	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	20107773	rs2703805	T	C	7684.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	20108239	rs2703806	A	T	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	20109189	rs2703807	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	20163529	rs2703791	A	G	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	20209474	rs2120282	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	20261101	rs111285254	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	20305306	.	C	CAATAAT	301.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=43.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	20354747	rs200108749	C	CCT	379.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;ClippingRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.93;MQRankSum=1.413;QD=34.53;ReadPosRankSum=1.793;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr17	20356536	rs200986076	A	G	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.77;MQRankSum=-3.287;QD=13.09;ReadPosRankSum=0.511;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr17	20361493	rs201762600	T	C	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-1.683;QD=10.31;ReadPosRankSum=0.010;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:76,76:0.50:152
chr17	20363552	rs201278698	C	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:61,14:0.19:75
chr17	20459595	rs57570943	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	20483817	.	CG	TA	2517.77	.	AC=2;AF=1.00;AN=2;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	20483882	rs11868057	T	C	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	20492807	rs199914815	C	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:59,13:0.18:72
chr17	20768788	rs78365129	G	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.468;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-9.824;QD=0.24;ReadPosRankSum=-3.807;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:249,16:0.06:265
chr17	20768803	rs76135364	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-9.280;QD=0.78;ReadPosRankSum=-2.612;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:224,21:0.09:245
chr17	20768816	rs73298040	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-9.406;QD=1.47;ReadPosRankSum=-0.626;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:200,25:0.11:225
chr17	20768839	rs372665136	GA	G	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-8.040;QD=4.27;ReadPosRankSum=1.864;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:109,22:0.17:131
chr17	20768850	rs114103783	G	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-7.885;QD=4.34;ReadPosRankSum=3.283;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr17	20768867	rs9906896	A	C	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-7.709;QD=7.43;ReadPosRankSum=2.843;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr17	20768928	rs141057464	AAT	A	473.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr17	20768931	rs76382049	A	G	482.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr17	20799119	rs2279263	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	21087615	rs3744227	C	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	21117837	rs4985988	T	C	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	21147404	rs897926	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	21156530	rs201190568	G	GC	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	21194585	.	G	C	90	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=2;MGOF=124;MMLQ=27;MQ=48.94;NF=7;NR=0;PP=90;QD=17.8244589353;SC=CAATACAATAGAATACAATAC;SbPval=1.0;Source=Platypus;TC=20;TCF=16;TCR=4;TR=7;WE=21194593;WS=21194578;set=Platypus	GT:AD:AF:DP	1/0:13,7:0.35:20
chr17	21194658	.	T	TACAACACAACACAACACAAC	1749.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=72.91;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	21194769	rs72840055	C	T	2802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=9.318;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-2.590;QD=13.22;ReadPosRankSum=0.139;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:134,78:0.37:212
chr17	21194785	rs72840057	T	C	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=7.055;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=-2.450;QD=14.60;ReadPosRankSum=-1.060;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:126,81:0.39:207
chr17	21194820	rs66503560	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:124,95:0.43:219
chr17	21194843	rs75693966	T	C	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.522;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:108,72:0.40:180
chr17	21194852	rs72840058	G	A	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.525;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:102,63:0.38:165
chr17	21194859	rs62056394	G	A	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.944;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:93,61:0.40:154
chr17	21198972	rs2363221	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr17	21199037	rs2885719	G	A	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:163,156:0.49:319
chr17	21199105	rs71291780	AGG	A	5346.73	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:177,156:0.47:333
chr17	21199236	rs2363219	C	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr17	21199275	rs2363218	G	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=0.599;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr17	21199275	.	GTG	TTA	606	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=27;MQ=60.0;NF=2;NR=13;PP=606;QD=43.9645249908;SC=CAGGGTCTCTGTGCAGAGCTT;SbPval=0.96;Source=Platypus;TC=41;TCF=13;TCR=28;TR=15;WE=21199285;WS=21199265;set=Platypus	GT:AD:AF:DP	0/1:26,15:0.37:41
chr17	21199277	rs2363217	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=1.247;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr17	21199376	rs5819736	G	GT	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.431;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:50,30:0.38:80
chr17	21199390	rs4997717	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=3.071;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr17	21199403	rs4997718	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=1.125;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:60,28:0.32:88
chr17	21199499	rs2885718	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr17	21199515	rs5025581	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr17	21201579	rs11651154	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr17	21201719	rs8076154	T	C	6413.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:342,330:0.49:672
chr17	21201851	rs8072386	A	G	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:269,293:0.52:562
chr17	21201884	rs2305875	T	C	5317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=7.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=0.796;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:132,149:0.53:281
chr17	21201890	rs8072401	A	G	4883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.69;ReadPosRankSum=2.041;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:114,122:0.52:236
chr17	21201894	rs8071865	C	T	4615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=2.177;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:108,116:0.52:224
chr17	21201907	rs2305874	G	A	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:71,96:0.57:167
chr17	21202056	rs34676150	G	A	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.144;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:79,52:0.40:131
chr17	21202063	rs77850849	G	C	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.424;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:93,57:0.38:150
chr17	21202067	rs76764437	A	G	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.755;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:96,65:0.40:161
chr17	21202078	rs35477472	G	A	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:119,80:0.40:199
chr17	21202102	rs35701021	C	T	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:196,115:0.37:311
chr17	21202191	rs33911218	C	A	8138.77	.	AC=1;AF=0.500;AN=2;DB;DP=1092;set=Intersection	GT:AD:AF:DP	0/1:647,440:0.40:1087
chr17	21202237	rs36047035	G	C	9879.77	.	AC=1;AF=0.500;AN=2;DB;DP=1176;set=Intersection	GT:AD:AF:DP	0/1:649,522:0.45:1171
chr17	21202272	rs34880480	C	G	7977.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:501,420:0.46:921
chr17	21202310	rs77343934	GC	AT	8283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.791;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=1.221;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:259,217:0.46:476
chr17	21202316	rs78463537	T	C	7811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=2.461;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:233,185:0.44:418
chr17	21202318	rs77591777	G	T	7035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=2.307;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:219,177:0.45:396
chr17	21202370	rs34794731	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr17	21202382	rs35763451	TG	T	1704.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr17	21203689	rs71207220	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr17	21203711	rs73311537	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr17	21203820	rs78304829	G	C	2729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-0.659;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:64,70:0.52:134
chr17	21203825	rs75854955	C	G	2783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=0.684;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:76,75:0.50:151
chr17	21203893	rs34105301	T	C	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:131,134:0.51:265
chr17	21203934	rs62057672	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,94:0.47:202
chr17	21203949	rs62057673	C	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr17	21203998	rs62057674	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr17	21204153	rs66883103	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr17	21204187	rs56067280	G	T	6464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=2.132;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:251,172:0.41:423
chr17	21204192	rs56216806	C	T	6566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=1.747;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:267,182:0.41:449
chr17	21204210	rs55796947	C	T	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:347,214:0.38:561
chr17	21204257	rs56166328	G	A	10698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-2.298;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:461,300:0.39:761
chr17	21204266	rs2230435	T	C	10672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.535;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:481,295:0.38:776
chr17	21204308	rs55777930	G	T	10990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.245;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:423,305:0.42:728
chr17	21204314	.	TTG	T	10546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DP=699;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.661;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:406,283:0.41:689
chr17	21204318	.	A	ACG	10278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DP=679;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=3.043;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:398,271:0.41:669
chr17	21204428	rs36191822	G	T	3333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.403;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:111,95:0.46:206
chr17	21204437	rs76549047	T	C	3050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.74;ReadPosRankSum=0.922;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:94,78:0.45:172
chr17	21204441	rs78162711	T	C	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=1.798;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:90,70:0.44:160
chr17	21205349	rs367722629	C	G	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=17.065;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.022;QD=8.20;ReadPosRankSum=-0.189;SOR=1.779;set=HC	GT:AD:AF:DP	0/1:147,49:0.25:196
chr17	21205352	rs66761201	CGGA	C	1546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=17.672;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.043;QD=7.70;ReadPosRankSum=0.291;SOR=1.878;set=HC	GT:AD:AF:DP	0/1:153,48:0.24:201
chr17	21205358	.	GGGGGCT	G	2980	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=1;MGOF=24;MMLQ=24;MQ=60.18;NF=14;NR=6;PP=2980;QD=20;SC=ACGTCGGAGAGGGGGCTGGGG;SbPval=0.06;Source=Platypus;TC=72;TCF=33;TCR=39;TR=20;WE=21205371;WS=21205339;set=Platypus	GT:AD:AF:DP	0/1:52,20:0.28:72
chr17	21205360	rs74998514	G	A	1547.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.655;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=21.230;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.102;QD=7.59;ReadPosRankSum=0.453;SOR=2.009;set=HC	GT:AD:AF:DP	0/1:155,49:0.24:204
chr17	21205361	rs67557217	GGCT	G	1538.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.866;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=21.171;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.152;QD=7.36;ReadPosRankSum=0.752;SOR=2.038;set=HC	GT:AD:AF:DP	0/1:160,49:0.23:209
chr17	21205396	rs75974715	C	A	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=6.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.733;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:137,69:0.33:206
chr17	21205406	rs72831582	A	G	2367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.195;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:139,72:0.34:211
chr17	21205460	rs62057721	C	T	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:157,133:0.46:290
chr17	21205592	rs66644302	GGC	G	4457.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:97,118:0.55:215
chr17	21205604	rs62057722	T	C	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:88,108:0.55:196
chr17	21205642	rs62057723	T	G	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr17	21205654	rs72831585	A	G	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.012;QD=19.65;ReadPosRankSum=0.583;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr17	21205654	.	AT	GA	1634	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=4;MGOF=27;MMLQ=21;MQ=60.12;NF=7;NR=19;PP=1634;QD=64.9026105716;SC=GAGCCTGCCTATTGATGGTGT;SbPval=0.45;Source=Platypus;TC=58;TCF=14;TCR=44;TR=26;WE=21205663;WS=21205632;set=Platypus	GT:AD:AF:DP	1/0:32,26:0.45:58
chr17	21205655	rs76165275	T	A	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.024;QD=19.92;ReadPosRankSum=0.808;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:41,41:0.50:82
chr17	21206269	rs73982750	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr17	21206294	rs73311581	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr17	21206360	rs67280439	A	G	4259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.58;ReadPosRankSum=-0.008;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:103,104:0.50:207
chr17	21206372	rs72838545	G	C	4951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.05;ReadPosRankSum=0.071;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:122,125:0.51:247
chr17	21206385	rs72838547	C	T	5160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=1.671;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:160,146:0.48:306
chr17	21206440	rs3744222	C	T	6642.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:260,321:0.55:581
chr17	21206444	rs62057728	A	G	5271.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:329,268:0.45:597
chr17	21206556	rs736103	C	T	3581.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:269,189:0.41:458
chr17	21206608	rs142661444	G	A	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.534;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:69,71:0.51:140
chr17	21206616	rs57761454	G	A	2288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=0.384;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:62,57:0.48:119
chr17	21206632	rs35678520	C	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=11.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=1.684;SOR=2.723;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr17	21206635	rs77285979	T	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.846;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=17.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=2.314;SOR=3.987;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr17	21206642	rs59259996	G	A	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=15.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=1.922;SOR=3.841;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr17	21206654	rs56821097	G	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr17	21207602	rs55677712	C	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr17	21207649	rs56342308	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr17	21207844	rs2230436	C	T	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:179,210:0.54:389
chr17	21207916	rs7209761	A	G	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	21207938	rs75147012	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.793;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:74,15:0.17:89
chr17	21207945	rs9896440	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr17	21208292	rs7214432	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.272;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:143,75:0.34:218
chr17	21208317	rs4456559	G	A	5552.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:129,209:0.62:338
chr17	21208331	rs1898407	G	A	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.098;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:274,122:0.31:396
chr17	21208347	rs4559960	C	A	2992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-0.291;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:325,147:0.31:472
chr17	21208349	rs7209860	C	G	2366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.993;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:324,147:0.31:471
chr17	21208413	rs1657695	C	T	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:343,187:0.35:530
chr17	21208449	rs1657694	G	T	5529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-1.126;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:242,155:0.39:397
chr17	21208456	rs1657693	A	G	5294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.321;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:228,144:0.39:372
chr17	21208640	rs7209152	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.73;ReadPosRankSum=-0.349;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr17	21208652	.	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.58;ReadPosRankSum=-1.221;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr17	21215424	rs35026048	G	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.774;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:66,58:0.47:124
chr17	21215434	rs113634008	A	AC	1483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.23;ReadPosRankSum=2.294;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:84,61:0.42:145
chr17	21215446	rs62055363	C	T	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.47;ReadPosRankSum=1.141;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:107,86:0.45:193
chr17	21215483	rs55935757	C	T	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:200,156:0.44:356
chr17	21215537	rs55736474	C	A	12214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-0.122;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:426,315:0.43:741
chr17	21215552	rs56369732	C	T	13528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.36;ReadPosRankSum=0.488;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:472,355:0.43:827
chr17	21215557	rs35206134	G	A	13863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=870;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.12;ReadPosRankSum=0.369;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:486,374:0.43:860
chr17	21215637	rs66486636	G	A	10299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.483;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:345,285:0.45:630
chr17	21215643	rs73302034	A	G	9922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.083;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:326,258:0.44:584
chr17	21215682	rs73302038	G	A	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:188,119:0.39:307
chr17	21215700	rs73302043	T	G	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:142,92:0.39:234
chr17	21216661	rs4994551	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.556;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.649;QD=16.50;ReadPosRankSum=0.034;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr17	21216664	rs4081986	A	G	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.735;QD=14.78;ReadPosRankSum=0.477;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr17	21216686	rs4994549	C	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,37:0.36:102
chr17	21216758	rs5819747	G	GCTTC	5817.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:208,149:0.42:357
chr17	21216788	rs1673840	C	T	4569.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:304,240:0.44:544
chr17	21216846	rs1657688	G	C	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:286,237:0.45:523
chr17	21216951	rs1673839	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr17	21216964	rs1657686	T	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	21217290	rs1673837	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr17	21217397	rs1657685	A	G	9152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.689;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:368,236:0.39:604
chr17	21217400	rs1622401	G	A	9456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-0.070;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:373,248:0.40:621
chr17	21217411	rs1657684	T	C	9904.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:398,286:0.42:684
chr17	21217513	rs2363198	G	A	5617.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:337,294:0.47:631
chr17	21217547	rs2363197	T	C	5706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-0.335;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:203,161:0.44:364
chr17	21217554	rs2363196	C	T	5465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=0.507;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:186,140:0.43:326
chr17	21217566	rs2363375	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:167,121:0.42:288
chr17	21217586	rs2363374	G	T	3019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.116;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:126,86:0.41:212
chr17	21217596	rs2363373	C	G	2901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.934;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:109,76:0.41:185
chr17	21318521	rs76804083	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr17	21318546	rs112960185	A	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-2.131;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:87,45:0.34:132
chr17	21318552	rs112854769	G	A	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.200;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:109,51:0.32:160
chr17	21318555	rs58462457	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=4.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.556;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:109,62:0.36:171
chr17	21318569	rs74584621	C	T	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:157,77:0.33:234
chr17	21318586	rs59891808	G	C	7332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.218;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.63;ReadPosRankSum=-1.451;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:109,230:0.68:339
chr17	21318588	rs77791524	C	G	4290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.740;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=9.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-0.331;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:228,116:0.34:344
chr17	21318603	rs79809401	C	T	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:297,144:0.33:441
chr17	21318629	rs58862472	C	A,T	6532.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.585;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-4.083;SOR=0.592;set=HC	GT:AD:AF:DP	1/2:209,288,231:0.40,0.32:728
chr17	21318663	rs72846666	G	A	7236.77	.	AC=1;AF=0.500;AN=2;DB;DP=1125;set=Intersection	GT:AD:AF:DP	0/1:710,409:0.37:1119
chr17	21318698	rs1657738	C	T	6144.77	.	AC=1;AF=0.500;AN=2;DB;DP=1311;set=Intersection	GT:AD:AF:DP	0/1:899,392:0.30:1291
chr17	21318741	rs75113504	C	T	12821.77	.	AC=1;AF=0.500;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	0/1:811,437:0.35:1248
chr17	21318760	rs74880280	G	T	12356.77	.	AC=1;AF=0.500;AN=2;DB;DP=1253;set=Intersection	GT:AD:AF:DP	0/1:836,395:0.32:1231
chr17	21318782	rs78117732	G	A	7216.77	.	AC=1;AF=0.500;AN=2;DB;DP=1262;set=Intersection	GT:AD:AF:DP	0/1:850,394:0.32:1244
chr17	21318821	rs1714865	A	C	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=1139;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.885;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:839,231:0.22:1070
chr17	21318852	rs149992288	C	T	4871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-2.396;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:764,310:0.29:1074
chr17	21318867	rs73979893	G	A	5581.77	.	AC=1;AF=0.500;AN=2;DB;DP=1069;set=Intersection	GT:AD:AF:DP	0/1:728,336:0.32:1064
chr17	21318897	rs1657739	G	C	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;ClippingRankSum=0.000;DB;DP=1035;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.461;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:740,227:0.23:967
chr17	21318918	rs79626424	G	A	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=1023;set=Intersection	GT:AD:AF:DP	0/1:714,294:0.29:1008
chr17	21318948	rs112314728	C	T	7690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;ClippingRankSum=0.000;DB;DP=961;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.524;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:702,238:0.25:940
chr17	21318951	rs75757803	C	T	7833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.475;ClippingRankSum=0.000;DB;DP=954;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.168;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:701,233:0.25:934
chr17	21318952	rs8076599	A	G	15456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.004;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:400,529:0.57:929
chr17	21318969	rs79666990	C	T	6538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.761;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=0.651;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:664,202:0.23:866
chr17	21318981	rs9909970	C	T	6012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.016;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.544;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:646,194:0.23:840
chr17	21319007	rs1657740	G	A	4747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=4.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=2.421;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:431,274:0.39:705
chr17	21319007	.	GG	AC	2345	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=37;MMLQ=18;MQ=59.96;NF=80;NR=77;PP=2345;QD=15.276865445;SC=GCTGAGGGCCGGGGCCGCACA;SbPval=0.27;Source=Platypus;TC=445;TCF=200;TCR=245;TR=157;WE=21319016;WS=21318997;set=Platypus	GT:AD:AF:DP	1/0:288,157:0.35:445
chr17	21319008	rs1657741	G	C	12245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=-0.116;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:334,378:0.53:712
chr17	21319069	rs76265595	G	A	4616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.371;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=2.105;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:672,170:0.20:842
chr17	21319087	rs75029097	G	A	5323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;ClippingRankSum=0.000;DB;DP=853;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=2.306;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:664,181:0.21:845
chr17	21319110	rs77283567	G	A	5448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=1.049;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:651,192:0.23:843
chr17	21319171	rs73313922	G	A	2763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.010;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:682,209:0.23:891
chr17	21319208	rs73979896	C	T	3139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=2.221;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:673,220:0.25:893
chr17	21319251	rs73313923	C	T	7847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=993;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.598;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:724,256:0.26:980
chr17	21319272	rs73313926	C	T	8690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.344;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:706,257:0.27:963
chr17	21319285	rs72846667	C	T	8913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=1.210;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:722,262:0.27:984
chr17	21319302	rs1657743	T	C	9948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.223;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:714,281:0.28:995
chr17	21319311	rs72846668	C	T	9855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-0.294;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:747,299:0.29:1046
chr17	21319392	rs73979899	G	A	10707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=1327;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.692;QD=8.16;ReadPosRankSum=0.178;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:973,339:0.26:1312
chr17	21319407	rs16962951	C	T	10318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=1354;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.500;QD=7.67;ReadPosRankSum=0.171;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:1019,326:0.24:1345
chr17	21319436	rs77270326	G	A	7486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=1185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-6.285;QD=6.36;ReadPosRankSum=-0.146;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:931,247:0.21:1178
chr17	21319439	rs76684759	T	G	7416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=1174;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-5.826;QD=6.36;ReadPosRankSum=-0.621;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:923,244:0.21:1167
chr17	21319452	rs73313929	G	A	5766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=1038;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-7.174;QD=5.58;ReadPosRankSum=0.172;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:838,195:0.19:1033
chr17	21319465	.	T	C	4749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DP=908;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-8.203;QD=5.25;ReadPosRankSum=-0.645;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:740,164:0.18:904
chr17	21319470	.	T	C	4229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DP=884;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-8.633;QD=4.81;ReadPosRankSum=-0.223;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:728,152:0.17:880
chr17	21319488	rs77176173	C	T	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-10.788;QD=4.55;ReadPosRankSum=-1.614;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:567,113:0.17:680
chr17	21319519	rs78113532	G	C	1632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-10.694;QD=3.39;ReadPosRankSum=-0.743;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:412,70:0.15:482
chr17	21319523	rs77987694	C	T	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-10.778;QD=3.49;ReadPosRankSum=-0.599;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:394,66:0.14:460
chr17	21319543	rs80335301	G	A	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.789;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=5.088;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-10.452;QD=3.74;ReadPosRankSum=0.263;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:331,57:0.15:388
chr17	21319560	rs74801394	G	T	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-9.621;QD=3.85;ReadPosRankSum=0.359;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:261,51:0.16:312
chr17	21319650	.	CGAG	C	1775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.313;QD=3.87;ReadPosRankSum=-0.018;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:364,95:0.21:459
chr17	21319716	rs78135255	G	A	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-13.297;QD=5.49;ReadPosRankSum=3.281;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:399,98:0.20:497
chr17	21319728	rs76681424	T	C	3018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-13.066;QD=6.32;ReadPosRankSum=1.488;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:373,105:0.22:478
chr17	21319743	rs76267885	A	G	2870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-13.156;QD=6.42;ReadPosRankSum=2.848;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:356,91:0.20:447
chr17	21319767	rs1612176	C	G,T	2957.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=368;set=Intersection	GT:AF:DP	0/1:0.35:233
chr17	21319785	rs1657745	C	T	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:188,114:0.38:302
chr17	21319786	rs78547883	G	A	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-10.430;QD=6.71;ReadPosRankSum=-0.168;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:234,66:0.22:300
chr17	21319845	rs72846670	C	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.465;QD=5.49;ReadPosRankSum=0.120;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:115,31:0.21:146
chr17	21319860	rs2917720	C	T,A	1540.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.634;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.22;MQRankSum=2.534;QD=12.95;ReadPosRankSum=1.189;SOR=0.539;set=HC	GT:AD:AF:DP	1/2:35,54,30:0.45,0.25:119
chr17	21319860	.	CGGCCTCAG	AGGCCTCAT,TGGCCTCAG	511	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=40;MMLQ=24;NF=4,9;NR=7,17;PP=360,511;QD=37.5879886238;SC=GAAGCCGGGACGGCCTCAGCC;SbPval=0.51;Source=Platypus;TC=62;TCF=20;TCR=42;TR=11,26;WE=21319876;WS=21319850;set=Platypus	GT:AF:DP	0/1:0.18:62
chr17	21319868	rs73979902	G	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=1.119;QD=7.10;ReadPosRankSum=0.090;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:87,26:0.23:113
chr17	21319908	rs66981137	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.115;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr17	21319943	rs5021699	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr17	21319955	rs76506689	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.053;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr17	21319982	.	C	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=2.002;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr17	21319989	rs5021700	C	A,T	710.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.34;ReadPosRankSum=1.392;SOR=0.527;set=HC	GT:AD:AF:DP	1/2:4,6,16:0.23,0.62:26
chr17	21319993	rs5021701	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.07;ReadPosRankSum=0.616;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr17	21320008	rs78435971	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.548;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr17	21320012	rs77515828	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr17	21320025	rs5021702	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr17	21536065	rs9325914	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.052;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=11.040;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-12.100;QD=0.76;ReadPosRankSum=-3.067;SOR=1.513;set=HC	GT:AD:AF:DP	0/1:221,38:0.15:259
chr17	21536106	rs9325915	T	C	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-13.470;QD=3.22;ReadPosRankSum=-0.501;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:244,75:0.24:319
chr17	21536168	rs9325916	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-9.061;QD=4.69;ReadPosRankSum=5.200;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:122,51:0.29:173
chr17	21544462	rs9285742	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-1.834;QD=7.38;ReadPosRankSum=-1.306;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr17	21544470	rs9285743	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-2.491;QD=9.62;ReadPosRankSum=-1.465;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr17	21544587	rs9285744	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:49,58:0.54:107
chr17	21544646	rs9285745	T	C	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.812;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr17	21544674	rs9747056	T	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr17	21730703	rs72842072	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	22066735	.	CA	GG	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.025;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-9.777;QD=4.63;ReadPosRankSum=-0.959;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr17	22066745	rs78440652	C	G	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-11.020;QD=4.80;ReadPosRankSum=-0.804;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:105,27:0.20:132
chr17	22066776	rs75644031	T	C	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-13.612;QD=10.89;ReadPosRankSum=-0.929;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:144,64:0.31:208
chr17	22066780	rs78507742	C	T	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-13.919;QD=10.65;ReadPosRankSum=-0.872;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:148,69:0.32:217
chr17	22066807	rs78727354	G	T	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-15.113;QD=4.75;ReadPosRankSum=3.870;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:182,85:0.32:267
chr17	22066822	rs137955476	C	T	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-14.438;QD=5.74;ReadPosRankSum=2.645;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:157,87:0.36:244
chr17	22066835	rs147079852	C	T	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.152;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-13.871;QD=6.24;ReadPosRankSum=0.824;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:142,87:0.38:229
chr17	22066856	rs138169151	CAG	C	1823.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-12.119;QD=10.67;ReadPosRankSum=0.638;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:113,58:0.34:171
chr17	22066870	rs79914182	G	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-11.897;QD=5.71;ReadPosRankSum=-0.036;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:108,58:0.35:166
chr17	25924596	rs16966333	C	T	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	25931586	rs116300704	C	T	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	25944235	rs4267373	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	25972157	rs72845102	A	G	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	25972311	rs2304886	C	T	5747.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:316,295:0.48:611
chr17	26079737	rs2304887	T	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.82;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	26079849	rs71373641	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.19;QD=28.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	26080008	rs4796027	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	26086227	rs28730831	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	26088337	rs59685746	GC	G	69.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	26089867	rs1060826	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	26092555	rs2297512	G	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	26092631	rs1060822	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	26099171	rs2274894	T	G	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	26100321	rs2248814	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	26108040	rs2297520	T	C	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr17	26109030	rs3729508	T	C	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	26109102	rs3730017	G	A	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	26114955	rs28942369	G	A	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	26115949	rs16966563	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	26206414	rs3751972	C	A	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	26633348	rs6505076	T	G	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	26646434	rs5819836	G	GC	4403.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	26669245	rs5819838	A	AG	1812.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	26676135	rs13469	C	T	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	26678960	rs2073867	G	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	26684283	rs11314852	GT	G	6158.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	26684390	rs11448856	G	GC	4636.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	26684394	rs17856014	T	G	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	26684449	rs4795429	G	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	26684529	rs113967755	G	GGC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	26687484	rs11379368	G	GC	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	26687898	rs11382918	G	GC	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	26691321	rs9910163	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	26692224	rs11387886	A	AG	14601.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	26694861	rs704	G	A	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chr17	26695704	rs2227725	A	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	26695832	rs2071379	A	G	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	26699121	rs7212814	G	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	26699195	rs11437592	C	CG	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	26699199	rs112387743	G	GC	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	26699205	rs11340312	GA	G	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	26699367	rs11437594	G	GC	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	26708298	.	A	AGC	9570.73	.	AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	26708302	.	GGT	G	9633.73	.	AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	26708550	rs11658194	TC	CG	7075.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	26716821	rs4795433	C	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=24.48;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	26716917	rs4795434	G	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	26727721	rs5819844	GA	G	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	26729214	rs41297097	C	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr17	26729428	rs4795436	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	26818676	rs9890678	T	C	9951.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	26850810	rs10527420	TTCTCTCTCTCTCTCTC	T	2338.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	26850929	rs483434	A	C	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	26851501	rs614434	G	A	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,402:1.00:403
chr17	26861605	.	C	CA	20	.	AC=1;AF=0.500;AN=2;FR=0.4992;HP=14;HapScore=2;MGOF=11;MMLQ=25;NF=1;NR=1;PP=20;QD=12.0;SC=ACTCATGAGCCAAAAAAAAAA;SbPval=0.61;Source=Platypus;TC=8;TCF=5;TCR=3;TR=2;WE=26861613;WS=26861595;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr17	26883313	rs631905	A	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr17	26918795	rs115257710	C	T	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr17	26970925	rs77624456	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	27000391	rs9904043	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	27002402	rs9892089	A	G	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	27005361	rs16964489	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	27050723	rs76539025	C	T	7999.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	27050924	rs368186775	AAT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.960;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr17	27051771	rs34739563	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	27053780	rs114594477	C	T	7786.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:2,306:0.99:308
chr17	27065211	rs3809797	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	27093475	.	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.415;QD=2.99;ReadPosRankSum=2.642;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr17	27093542	rs9900141	G	A	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.33;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	27185827	rs2242345	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	27207571	rs1060244	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	27210253	rs6505095	T	C	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	27213076	rs57069941	C	CGG	326.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;QD=32.67;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	27216152	rs78073990	G	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	27224693	rs147520554	G	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	27228786	rs115755544	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	27246368	rs68042462	CCTCCCCTCCTTGATCCTAACATT	C	698.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	27290969	rs11450637	T	TG	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	27306661	rs62068969	G	A	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	27306898	.	CGTGTGT	C,CGT	134	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=9;MMLQ=17;MQ=60.0;NF=0,0;NR=4,4;PP=76,134;QD=19.75;SC=AAGGCTGAACCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4,4;WE=27306911;WS=27306888;set=Platypus	GT:AF:DP	0/1:0.44:9
chr17	27382119	rs114162436	G	A	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	27413908	rs4795495	C	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	27414253	rs114622641	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	27437168	rs140129224	CAGA	C	4688.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	27446571	.	ATT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.23;ReadPosRankSum=-2.050;SOR=3.086;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr17	27456234	rs73268386	A	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	27492869	rs6505113	A	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr17	27575992	rs149652143	GCAA	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.222;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:69,7:0.09:76
chr17	27577334	rs72819448	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr17	27579051	rs116279055	A	G	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	27580756	rs1047790	C	T	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	27591393	.	C	CTATA	1277.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.76;ReadPosRankSum=0.578;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr17	27809104	rs6505138	A	G	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	27816686	rs9897675	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	27829588	rs367720840	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=9.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=2.135;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr17	27835138	rs508706	C	T	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	27889578	rs539307	T	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	27889986	rs542939	T	C	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr17	27895682	rs200199476	GC	G	299.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=33.30;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	27898828	rs565977	T	C	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	27899986	rs11541471	C	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	27901537	rs35948647	C	CA	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	27901975	rs550818	A	G	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	27904322	rs601364	A	G	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	27905673	rs563976	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	27938424	rs11080107	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	27949934	rs77991986	G	GC	948.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=35.14;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	28120851	rs2617882	A	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	28320248	rs4795524	T	A	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	28323499	rs12944395	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	28378276	rs11653805	C	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	28381141	rs4074170	C	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	28386526	rs4075623	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	28400079	.	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.528;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:185,36:0.16:221
chr17	28407287	rs11080114	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	28407876	rs7221743	T	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	28410124	rs12941382	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	28417376	rs8065059	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	28418765	rs11080116	C	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr17	28418794	.	T	C	658.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr17	28434826	rs5819880	ACTTTT	A	850.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;MQ=60.49;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	28505024	rs7221154	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	28511978	rs1979572	G	A	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	28538532	rs140701	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	28542776	rs34083002	C	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	28549898	rs6354	G	T	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr17	28612448	rs7342921	G	C	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	28618796	rs201772650	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	28618972	rs34774348	T	TCGG	4440.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.094;QD=40.37;ReadPosRankSum=-0.399;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:4,106:0.96:110
chr17	28646057	rs6505173	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	28659010	rs3110095	C	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	28706011	rs181199485	C	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	28811805	rs116313398	G	A	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	28900708	rs3764416	G	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	28900915	rs58713975	C	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	28960991	.	CT	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-1.191;QD=3.89;ReadPosRankSum=-0.366;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr17	29051705	rs9903735	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.28;QD=27.09;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	29061941	rs112064181	T	C	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.69;QD=25.98;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	29111368	rs11867457	A	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	29192593	.	G	C	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr17	29206420	rs368295774	TG	T	75.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-3.534;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr17	29206421	rs6505216	G	T	902.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=2.197;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:19,52:0.73:71
chr17	29221227	rs9898911	A	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	29221277	rs62070652	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	29226630	rs28539246	T	A	574.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	29226652	rs9897628	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	29258846	rs369963418	CA	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=2.956;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr17	29298304	rs7225888	C	G	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	29298413	rs7211440	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	29298451	rs7224960	G	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	29315193	rs7220978	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	29320775	rs6505224	A	T	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	29324169	rs73267786	G	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	29421446	.	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.050;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:77,18:0.19:95
chr17	29482878	rs2269855	G	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	29486152	rs2952976	G	A	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr17	29508775	rs1801052	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	29509791	rs2953000	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	29528562	rs17885375	G	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	29545987	rs67472948	A	AT	847.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	29553336	.	G	GACACACACACACACACACAC,GACACACACACACACACAC	518.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:10
chr17	29553473	rs2230851	C	T	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	29558082	rs2071009	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	29559942	rs2066737	A	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	29560021	rs2066733	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	29563085	rs56874702	T	TG	2207.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.512;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=0.000;QD=27.26;ReadPosRankSum=-1.413;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:5,76:0.94:81
chr17	29576817	rs17883128	TATTTATTCCAAGG	T	855.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.75;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	29586219	rs112394672	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	29634943	rs115218357	C	T	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	29635089	rs113128446	T	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	29646032	rs1129506	G	A	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr17	29653293	rs9894648	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	29654876	rs2285894	T	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	29663624	rs66638017	T	TA	557.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=34.86;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	29663625	rs7406039	T	A	607.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=37.99;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	29663964	rs17880702	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	29670190	rs7405740	C	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	29675971	rs2525569	T	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	29679152	rs17886826	G	A	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	29679246	rs964288	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	29684553	rs7350943	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	29705947	rs2525574	T	C	9942.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	29706131	rs113186393	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	29758774	rs34137478	C	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	29815385	rs57391434	G	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr17	29815404	rs8075239	T	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	29848450	rs2301684	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	29848849	rs8068385	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	29852092	rs2023795	A	G	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	30183663	rs71142094	G	GC	485.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	30183857	rs8068049	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	30185565	rs9906443	G	A	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	30185892	rs11542477	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	30186375	.	C	CGGGGGCGGGGCGGTGCA	359.74	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	30195292	rs16967029	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	30216514	.	ATTT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.369;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr17	30321113	rs71375493	T	G	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	30368543	rs12937850	G	A	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr17	30469470	.	C	CCCG,CCCGCCG	798.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;QD=39.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:0,6,14:0.30,0.70:20
chr17	30509939	rs6505286	C	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	30519351	rs10615858	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.150;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr17	30632617	rs9905406	A	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	30632617	.	AAA	CAG	810	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=14;PP=810;QD=53.9667421789;SC=GGCCCATTTCAAATGAGCGCC;SbPval=0.57;Source=Platypus;TC=17;TCF=2;TCR=15;TR=16;WE=30632627;WS=30632607;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	30632619	rs9905407	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	30643361	rs2344973	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	30659006	rs1019152	T	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	30687522	rs6505295	G	C	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	30689814	rs9896320	G	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	30696292	rs2286645	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	30791503	rs2302276	C	T	10372.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,420:1.00:422
chr17	30822034	rs9889257	C	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	31039267	rs9913989	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	31039287	rs73280074	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	31065226	rs16967586	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	31076030	rs73281835	G	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	31082747	rs4548927	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	31266419	rs2726134	T	C	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=46.33;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	31266438	rs377006515	A	AAAGG	7170.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;QD=38.55;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	31319024	rs2188953	A	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	31319033	rs3922357	G	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	31319092	rs2188952	T	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	31319126	.	GGA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.87;ReadPosRankSum=-2.260;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr17	31323728	rs140981292	A	AG	564.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	31324077	rs28904	C	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	31324330	.	A	AGTGT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.43;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr17	31324523	rs35014584	C	T	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	31324657	rs28958	T	C	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	31342949	rs28929	A	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	31344549	rs2074215	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	31344862	rs28925	C	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	31355227	rs58042873	A	AG	564.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	31439097	rs140895516	AAG	A	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.350;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr17	32364722	rs4795846	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr17	32583132	rs2857657	G	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	32614672	rs34262946	A	C	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	32904480	rs887231	G	A	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	32904586	rs887230	C	T	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	32906373	rs56322375	G	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	32908064	rs4795938	T	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	32908210	rs7218304	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	33257931	rs114921705	T	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	33288269	rs142083371	GTC	G	4885.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr17	33307700	rs57311484	GC	G	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	33330150	rs4796030	A	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	33332177	rs1003918	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	33341834	rs2074519	T	C	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr17	33353332	rs3926358	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	33353706	rs116652668	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	33428159	rs9914109	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	33433820	rs936656	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	33443770	rs9915609	C	T	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	33445549	rs9901455	G	A	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr17	33448818	rs1871892	T	C	13061.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr17	33463568	rs3736143	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	33464864	rs7215209	C	T	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	33469279	rs1471615	G	C	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	33482522	rs11869662	G	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	33503922	rs9902956	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	33504465	rs12451132	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	33513591	rs3744365	A	C	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	33586728	rs9905150	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr17	33680812	rs139588310	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.44;QD=30.85;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	33680840	rs28571667	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	33687416	rs938298	C	T	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	33689926	rs4796077	T	C	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	33690863	rs4796078	G	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	33769039	rs116769825	G	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-5.640;QD=5.03;ReadPosRankSum=-0.745;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:113,56:0.33:169
chr17	33802156	rs3744372	T	G	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr17	33805150	rs2304968	T	C	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	33805180	rs2304967	G	C	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	33806332	rs8066132	C	T	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	33806812	rs12451876	C	T	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	33807250	rs9905892	T	A	806.78	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr17	33814735	rs10626701	G	GAA	9775.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=43.45;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	33879670	rs71366453	C	CAT	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	33879682	rs71366454	C	CAT	325.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=40.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	33881631	rs321612	T	C	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	33881718	rs321613	G	A	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=40.00;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	33881734	rs321614	A	G	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.51;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	33884006	rs80281779	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	33921160	rs225305	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	33925522	rs114654792	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	33933006	rs225284	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	33963611	rs11345348	AT	A	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	33968871	rs225270	A	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	33998802	rs1049379	G	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	34072555	rs3744374	G	A	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr17	34090916	.	AAAATAAATAAAT	AAAAT,A	1549.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:35
chr17	34100350	rs58543174	G	GC	10270.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	34171590	rs4251785	A	G	5225.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=-0.261;QD=24.53;ReadPosRankSum=-1.274;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:4,209:0.98:213
chr17	34325532	rs2075746	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	34325809	rs142938376	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	34340161	rs1734953	T	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	34416151	rs5029410	A	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	34416665	rs1719133	A	G	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	34431287	rs1049750	G	T	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	34431961	rs1719146	T	C	213.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.21;MQRankSum=-1.824;QD=16.40;ReadPosRankSum=-1.015;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr17	34432125	rs1719147	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	34842521	rs4796224	A	G	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr17	34862220	rs1109442	T	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	34869150	rs6607296	C	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	34869155	rs8882	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.79;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	35294464	rs71380119	G	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	35295304	rs71380120	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	35295663	rs35618899	C	A	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	35299688	rs8075125	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	35300494	rs138151008	GAA	G	2660.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.484;MLEAC=2;MLEAF=1.000;MQ=61.19;MQRankSum=0.741;QD=23.97;ReadPosRankSum=1.296;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:13,98:0.88:111
chr17	35307774	rs9905926	T	C	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	35307777	rs34288228	C	A	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	35307823	rs35798242	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	35470230	rs3815059	A	T	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	35478362	rs1470452	T	C	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	35486486	rs9789070	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.42;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	35486495	rs17848779	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	35581887	rs144469510	TTA	T	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr17	35614635	.	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=436.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.297;SOR=9.087;set=HC	GT:AD:AF:DP	0/1:111,93:0.46:204
chr17	35771437	rs17138766	C	A	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	35771468	rs7211875	C	T	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	35783852	rs10706906	CT	C	128.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.06;ReadPosRankSum=2.838;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr17	35818739	rs66822894	TTGTGTGTG	T,TTG	1283.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=73;set=Intersection	GT:AF:DP	1/2:0.30,0.65:43
chr17	35898342	rs2074409	G	T	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	35899141	rs1034686	T	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	35900732	.	C	CTTT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.16;ReadPosRankSum=-1.131;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr17	35902390	rs61753647	T	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	35921724	rs7208481	T	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	35956263	rs4795207	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	35984410	rs7216445	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	35988672	rs7224513	C	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	35988718	.	TA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.313;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr17	36003275	rs3813911	T	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	36003359	rs3813910	A	G	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	36003613	rs59697282	CTT	C	327.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	36047275	rs1800929	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	36047417	rs3110641	A	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	36058993	rs9890418	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	36059246	rs2269842	A	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	36059377	rs2269841	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	36060883	rs2189302	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	36061297	rs2074429	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	36093863	rs3216929	G	GCAGA	4229.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr17	36204767	.	C	CTTAT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr17	36204779	rs79915033	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=-1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr17	36204788	rs77286110	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-0.637;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr17	36213829	rs6607306	C	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	36233906	rs9896972	C	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=25.09;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	36234106	rs2677185	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	36352408	rs11407739	G	GT	8858.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=2.509;QD=11.06;ReadPosRankSum=3.242;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:200,601:0.75:801
chr17	36352537	rs62074773	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.01;QD=29.92;SOR=3.868;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	36352572	rs62074774	C	T	561.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.488;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.99;MQRankSum=-1.546;QD=28.09;ReadPosRankSum=-0.612;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr17	36353528	.	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=49.12;MQRankSum=1.222;QD=2.18;ReadPosRankSum=-0.507;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr17	36353545	rs8065386	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.81;MQRankSum=-1.107;QD=2.70;ReadPosRankSum=1.007;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr17	36353560	rs111638343	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.10;QD=30.07;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	36353746	rs7212559	CA	TG	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.12;MQRankSum=-1.481;QD=2.91;ReadPosRankSum=0.861;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:477,73:0.13:550
chr17	36357280	rs149632022	TA	T	1383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-15.938;QD=1.83;ReadPosRankSum=0.664;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:558,198:0.26:756
chr17	36357295	rs79239780	A	G	2345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.751;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-0.964;QD=3.11;ReadPosRankSum=0.736;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:565,190:0.25:755
chr17	36357365	rs372645632	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.464;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=1.396;QD=1.86;ReadPosRankSum=-0.571;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:119,24:0.17:143
chr17	36357835	rs1848308	G	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:434,171:0.28:605
chr17	36358189	.	GATATATAT	G	1815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DP=319;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.981;QD=12.02;ReadPosRankSum=4.101;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:73,78:0.52:151
chr17	36358847	rs77355093	T	A	57624.77	.	AC=2;AF=1.00;AN=2;DB;DP=2210;set=Intersection	GT:AD:AF:DP	1/1:0,2180:1.00:2180
chr17	36361992	rs201942294	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.500;MQ=53.51;MQRankSum=-0.818;QD=3.95;ReadPosRankSum=0.466;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:203,75:0.27:278
chr17	36365172	rs199974327	C	T	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-5.983;QD=2.78;ReadPosRankSum=0.164;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:402,116:0.22:518
chr17	36365191	rs200956444	A	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-3.573;QD=5.12;ReadPosRankSum=1.434;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:198,90:0.31:288
chr17	36374963	rs11389346	TA	T	1413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=1.531;QD=8.08;ReadPosRankSum=0.570;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:51,124:0.71:175
chr17	36375227	rs2271169	C	T	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:323,153:0.32:476
chr17	36384823	.	G	GAGACA	1672.73	.	AC=1;AF=0.500;AN=2;DP=235;set=Intersection	GT:AD:AF:DP	0/1:160,51:0.24:211
chr17	36385052	.	T	G	952.77	.	AC=1;AF=0.500;AN=2;DP=221;set=Intersection	GT:AD:AF:DP	0/1:154,60:0.28:214
chr17	36398142	.	TCACA	T	2778	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=27;MQ=48.88;NF=33;NR=71;PP=2778;QD=20;SC=TCTCTCTCTCTCACACACACA;SbPval=0.68;Source=Platypus;TC=170;TCF=59;TCR=111;TR=104;WE=36398155;WS=36398115;set=Platypus	GT:AD:AF:DP	1/0:66,104:0.61:170
chr17	36398144	rs2663721	A	T	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:230,113:0.33:343
chr17	36398162	.	ACACC	A	1636.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.510;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=1.174;QD=3.74;ReadPosRankSum=5.485;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:325,113:0.26:438
chr17	36398164	rs74431493	A	C	311.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=5.423;QD=0.79;ReadPosRankSum=3.335;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:335,59:0.15:394
chr17	36453113	rs139534849	T	G	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.500;MQ=49.16;MQRankSum=-2.479;QD=15.97;ReadPosRankSum=-1.138;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:39,114:0.75:153
chr17	36453125	rs112285248	T	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.323;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=49.86;MQRankSum=1.502;QD=2.52;ReadPosRankSum=2.554;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:128,39:0.23:167
chr17	36453208	rs149988943	T	C	6422.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.68;MQRankSum=-1.283;QD=25.39;ReadPosRankSum=-0.507;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,252:1.00:253
chr17	36474601	rs59939216	A	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=25.65;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	36474721	.	C	CTTTTCTTTTTTT	2128.73	.	AC=2;AF=1.00;AN=2;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.46;QD=35.48;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:4,56:0.93:60
chr17	36478300	rs73984499	T	C	894.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-0.811;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr17	36478345	rs73302946	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	36478388	rs73302948	G	T	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	36485753	rs35803744	G	C	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	36489291	rs11871123	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	36490466	rs4293432	C	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	36490801	rs4795266	C	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	36491376	rs4794778	T	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	36493203	rs4312356	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	36493598	rs9894059	A	G	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:3,232:0.99:235
chr17	36499499	.	G	A	2235.77	.	AC=1;AF=0.500;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	0/1:161,114:0.41:275
chr17	36517443	rs9890974	C	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	36617210	rs9898977	A	G	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	36622482	rs8075324	G	C	16878.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr17	36623139	rs115941914	G	A	14477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.040;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:2,561:1.00:563
chr17	36625536	rs9896092	C	T	11888.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr17	36646386	rs9891156	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	36666551	rs62074752	T	C	2548.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=1.951;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,103:0.99:104
chr17	36667183	rs9303325	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	36699322	rs2502364	A	G	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	36700376	rs2502363	C	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	36707305	rs2471622	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	36708648	rs35447171	A	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	36718610	rs6503709	T	A	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=25.38;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	36719593	rs114770101	C	A	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	36734700	rs7503695	T	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	36734706	rs144253512	CAGCCGG	C	3417.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	36761834	.	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	36830562	rs79676758	G	C	484.82	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr17	36861983	rs17855918	T	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	36863040	rs7226104	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	36869321	rs79269569	C	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	36873149	rs9892493	C	T	6260.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr17	36881872	rs372049304	AC	A	3370.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	36887875	rs12452967	T	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	36889466	rs5820264	G	GCCTGC	8171.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:3,178:0.98:181
chr17	36894768	rs7212919	A	G	11062.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	36894839	rs1138349	G	A	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	36895206	rs2075056	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	36896534	rs2075057	C	T	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	36918551	rs228280	G	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr17	36926731	rs228289	T	G	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	36927690	rs25540	C	CTAAG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	36932200	rs228293	C	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	36932233	rs369394659	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.464;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr17	36932891	rs228294	A	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	36962670	rs228249	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	36962689	rs2302472	G	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	36963226	rs3785452	G	T	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.38;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	36963234	rs3785451	A	G	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	36963260	rs3785450	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	36977197	rs73985024	G	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	36993655	rs645686	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	36993689	rs75878144	G	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	36997288	rs595306	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	37009674	rs73985033	T	G	9421.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	37010150	rs923370	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	37055077	rs17590541	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	37070658	rs525989	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	37070737	rs525767	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	37071189	rs2241009	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	37075070	rs138655471	G	A	13247.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr17	37075286	rs144614922	A	AGGGCGAGGCCCGTGG	14871.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=45.34;SOR=1.551;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	37076331	rs646097	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=25.92;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	37094715	.	CTT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.32;ReadPosRankSum=-0.399;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr17	37101380	rs9906595	T	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	37217280	rs143023150	AGG	A	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	37228765	rs9907595	A	G	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	37235720	rs77715135	C	T	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	37235838	rs114480223	C	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	37239671	rs9891236	A	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	37253064	rs4795348	T	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	37253316	rs4795349	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	37262080	rs7213676	G	C	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	37317672	rs511163	C	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	37340970	rs73304972	G	T	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	37341235	rs2301775	A	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	37349710	rs16532	C	G	16024.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,642:1.00:642
chr17	37351041	rs16535	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	37357653	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.213;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr17	37359427	.	ATT	A,AT	1415.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.712;QD=14.75;ReadPosRankSum=1.156;SOR=0.917;set=HC	GT:AD:AF:DP	1/2:6,55,35:0.57,0.36:96
chr17	37371141	rs8070891	G	C	14255.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr17	37371519	rs11078892	T	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	37381851	rs35137197	G	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	37399379	rs2879258	G	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	37441679	rs679995	A	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	37453294	rs632202	C	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	37453485	rs594794	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	37457342	rs2302073	A	G	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	37499604	rs9903363	C	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	37561613	rs6503513	A	G	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	37561712	.	AT	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.505;QD=2.01;ReadPosRankSum=-1.241;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr17	37671910	rs8070799	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	37855713	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.863;QD=0.69;ReadPosRankSum=1.858;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr17	37898543	rs2952142	T	C	10959.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	37921899	rs2952141	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	38032969	rs34986808	T	G	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	38068514	rs1011082	T	C	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	38097602	rs11344927	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.32;ReadPosRankSum=-0.701;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr17	38100134	rs4795406	G	C	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	38101140	rs377232669	TTC	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.081;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr17	38121993	rs3894194	G	A	14443.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-1.055;SOR=0.112;set=HC	GT:AD:AF:DP	1/1:2,561:1.00:563
chr17	38126911	.	AACACACACAC	A,AAC	2197.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=62;set=Intersection	GT:AF:DP	1/2:0.24,0.76:54
chr17	38127713	rs3916061	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr17	38128584	rs5820314	A	AG	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	38128648	rs3859192	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	38128714	rs3859191	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	38129996	rs60137005	A	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	38130139	rs56326707	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	38131187	rs56030650	C	A	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	38140524	rs3816471	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	38145828	rs57968500	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	38146263	rs3217173	GA	G	2555.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	38146482	.	CT	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.181;QD=3.28;ReadPosRankSum=-0.113;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:83,60:0.42:143
chr17	38153714	rs10671123	T	TGA	11985.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	38153875	rs7021	T	A	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	38171668	rs2227322	C	G	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	38172192	rs2227324	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr17	38172305	rs2071369	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	38172452	rs2071370	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	38172942	rs2227338	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	38176476	rs9899955	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	38178627	rs3213762	A	G	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	38179290	rs4794824	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	38179667	rs2302778	A	G	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	38182659	.	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	38252667	rs939346	G	A	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	38253228	rs2102928	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	38296626	.	AACAC	A	233.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=33.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	38324766	rs11327454	AT	A	480.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	38334359	rs66989091	A	AG	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	38346802	rs56304903	C	G	9283.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	38348616	rs56357916	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	38447569	rs1130199	T	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	38450788	rs4135014	T	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	38451739	rs57344278	T	TA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.796;QD=1.27;ReadPosRankSum=0.988;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr17	38457151	rs13706	G	A	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	38512197	rs8069541	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	38519291	rs502041	C	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	38556770	rs471692	T	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	38563710	rs558068	C	G	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	38566396	rs2715548	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	38572366	rs2586112	G	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	38609187	rs1009727	G	A	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	38609207	rs1009728	T	C	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	38609431	rs5820347	G	GAC	1998.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr17	38640744	rs2290207	C	T	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	38640992	rs2290206	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	38644752	rs34377860	G	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	38645125	rs3764424	A	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	38645331	rs34879399	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	38786451	rs4890092	A	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	38786641	rs67015271	GT	G	5024.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	38813462	rs34128971	CA	C	109.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	38813824	rs8068721	G	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	38813828	rs11412331	G	GT	352.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	38816526	rs917593	A	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.85;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	38816595	rs2008469	T	C	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	38855772	rs2462961	T	C	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	38856297	rs16966138	G	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	38857401	rs76253297	G	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	38857975	.	GTATATATATATATATATATATATATATATATATATATATATA	G	2157	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=24;MQ=59.94;NF=2;NR=2;PP=2157;QD=540.0;SC=TGATCCTCTAGTATATATATA;SbPval=0.59;Source=Platypus;TC=18;TCF=10;TCR=8;TR=4;WE=38858037;WS=38857965;set=Platypus	GT:AD:AF:DP	1/1:14,4:0.22:18
chr17	38857986	.	TA	T	1933.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.46;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	38857988	.	TATATATATATATATATATATATATATATATATATATATATA	T	1934.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	38910970	rs33924883	C	CAA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-0.000;QD=9.08;ReadPosRankSum=-1.510;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr17	38948759	rs148682580	G	T	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	38950239	rs2270153	C	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	38950251	rs2270154	A	G	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	38953540	rs3813038	A	G	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:2,349:0.99:351
chr17	38954687	rs9914044	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr17	38955951	rs111474643	G	A	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	38975190	rs184159044	C	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	38975328	rs17855579	G	A	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	38976998	rs1799873	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	38978536	rs4261597	A	C	25734.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.42;ReadPosRankSum=-0.406;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:2,972:1.00:974
chr17	38990834	rs2240078	G	C	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	39036795	rs113117542	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	39038941	.	TTTTATTTATTTA	T	3170.73	.	AC=2;AF=1.00;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr17	39041052	rs7212483	C	T	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	39081546	rs2269860	A	G	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	39081713	rs8037	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	39084504	rs9257	T	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	39092868	rs2269858	G	A	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	39123131	rs5820378	G	GT	1956.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	39134455	rs2271277	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=25.09;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	39134561	rs2271278	C	T	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	39134576	rs2271279	A	C	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	39134585	rs2271280	G	A	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	39134590	rs2271281	G	C	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	39135084	rs8064733	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	39135205	rs8064910	A	G	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=44.83;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	39135214	rs8068970	T	C	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=43.97;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	39135322	rs8068223	C	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	39137297	rs721957	C	T	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	39138526	rs141909768	G	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	39139256	rs9910558	A	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	39139348	rs16968859	A	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	39140272	rs17843015	A	G	10349.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr17	39150284	rs2010201	A	G	12175.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:2,474:1.00:476
chr17	39150357	rs1989365	A	G	8550.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	39150443	rs2010209	G	A	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	39155758	rs3813047	G	A	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	39155881	rs3813048	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	39155969	rs3813050	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.87;QD=31.58;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	39156067	rs9890989	A	G	9625.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.04;QD=25.46;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	39156084	rs9897046	T	C	9804.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr17	39156224	rs3813051	C	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	39240426	rs11658607	G	A	14903.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr17	39240504	rs11655310	A	G	16746.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.77;QD=42.18;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	39240504	.	AGCCAAGA	GGCCAAGA,GGCCAAGT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MMLQ=24;MQ=45.58;SC=CCAGGGCTGCAGCCAAGACCT;Source=Platypus;TC=311;TR=311,250;WE=39240519;set=Platypus	GT:AF:DP	0/1:1.00:311
chr17	39240511	rs383835	A	T	7801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.601;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=63.956;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=8.203;QD=20.37;ReadPosRankSum=6.994;SOR=0.150;set=HC	GT:AD:AF:DP	0/1:42,341:0.89:383
chr17	39240661	rs11650484	C	G	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	39254335	rs201764113	A	AT	11281.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	39254444	rs6416913	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	39257791	.	TGAGGG	T	233.79	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=38.96;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	39258027	rs7503699	G	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.80;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	39258495	rs168397	G	A	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	39261560	rs349792	T	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.95;QD=32.21;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	39261608	rs349791	G	A	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.87;QD=46.02;SOR=2.474;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	39261611	rs11654665	G	A	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.67;QD=42.77;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	39261933	rs7207685	C	T	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	39261949	rs7212474	T	C	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	39274069	rs349771	G	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr17	39274415	rs425487	C	T	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-9.833;QD=3.74;ReadPosRankSum=-1.947;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:264,52:0.16:316
chr17	39274426	.	T	A	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-10.296;QD=3.22;ReadPosRankSum=-3.988;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:275,44:0.14:319
chr17	39274435	.	A	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=7.043;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-11.758;QD=2.37;ReadPosRankSum=-3.343;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:288,33:0.10:321
chr17	39274437	.	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=9.410;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-11.474;QD=1.43;ReadPosRankSum=-2.349;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:292,28:0.09:320
chr17	39274518	rs9897031	C	T	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	39305956	rs1497383	G	A	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	39333956	rs377518	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	39334133	rs389784	T	C	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr17	39334456	rs493514	G	A	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	39340597	rs452216	G	A	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	39340707	rs398825	C	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	39340795	.	ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	A	3985.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;MQRankSum=-0.378;QD=37.25;ReadPosRankSum=0.279;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:2,105:0.98:107
chr17	39340812	.	T	C	1168	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MMLQ=26;NF=25;NR=29;SC=CAGCTGGACATACCACAGCTG;Source=Platypus;TCF=25;TR=54;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:2,54:0.96:56
chr17	39340826	.	T	C	942	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=6;HapScore=1;MGOF=48;MMLQ=24;MQ=54.79;NF=16;NR=34;PP=942;QD=19.5354242509;SC=ACAGCTGGGGTGGCAGGTGGT;SbPval=0.54;Source=Platypus;TC=53;TCF=17;TCR=36;TR=50;WE=39340834;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:3,50:0.94:53
chr17	39340843	.	GCAGAGTGGG	ACAGACTGGG,ACAGAGTGGA	1340	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=47;MMLQ=27;MQ=55.3;NF=2,13;NR=11,20;PP=430,1340;QD=37.1898365279;SC=TGGTCTGACAGCAGAGTGGGC;SbPval=0.95;Source=Platypus;TC=51;TCF=17;TCR=34;TR=13,33;WE=39340860;WS=39340833;set=Platypus	GT:AF:DP	0/1:0.25:51
chr17	39340910	rs2320231	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	39341158	rs452531	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr17	39341266	rs449817	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	39341294	rs385122	T	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	39346518	rs238824	T	C	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	39346595	rs11283848	T	TGCTGTGGGTCCAGCTGCTGCCAGCCTA	4302.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=-0.063;QD=34.15;ReadPosRankSum=0.591;SOR=0.466;set=HC	GT:AD:AF:DP	1/1:1,125:0.99:126
chr17	39406409	rs2191379	C	A	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	39406447	rs3967754	A	G	6962.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	39432562	rs9893993	A	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	39458765	rs1005197	A	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	39459167	rs1005196	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	39535859	rs2239710	A	G	8525.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	39593768	rs897416	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	39593872	rs897415	A	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	39594934	rs71155140	AC	A	22889.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.120;QD=29.35;ReadPosRankSum=2.543;SOR=0.408;set=HC	GT:AD:AF:DP	1/1:5,775:0.99:780
chr17	39595661	rs2071611	T	A	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	39596393	rs12601328	C	A	7503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.14;ReadPosRankSum=1.885;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:2,168:0.99:170
chr17	39596402	rs2071610	G	A	7543.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.86;ReadPosRankSum=1.239;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,174:0.99:176
chr17	39596538	rs2071609	C	T	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	39596611	rs1350046	T	C	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	39616288	rs3840884	TG	T	117	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	39616430	rs2604953	G	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	39619093	rs2604954	GT	AC	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	39619115	rs2071563	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	39619219	rs2857257	G	A	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr17	39619388	rs4796636	C	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	39620399	rs12948056	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	39633317	rs2239711	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	39633349	rs2071601	G	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	39634625	rs7216017	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	39635194	rs12936485	G	A	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	39636044	rs2011243	G	A	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	39637244	rs743686	A	G	5903.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	39644057	rs2301353	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	39646021	rs1003842	A	G	6770.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	39648609	rs71373414	G	A	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	39659194	rs4796697	T	C	7399.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:3,288:0.99:291
chr17	39659357	rs34367942	G	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	39661275	rs34047520	T	A	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:4,276:0.99:280
chr17	39661689	rs8182306	G	A	17908.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr17	39671045	rs897421	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	39728050	rs8070680	G	A	25180.77	.	AC=2;AF=1.00;AN=2;DB;DP=985;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,964:1.00:964
chr17	39738797	rs2001185	T	C	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=26.01;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	39739272	rs936100	T	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	39739411	rs897428	A	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	39739451	rs35380497	T	TG	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	39740317	.	C	T	81.56	.	AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=20.39;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	39740319	.	C	T	82.41	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=20.60;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	39740321	rs28391845	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=22.82;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	39740629	rs75795684	T	C	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	39741124	rs71373429	A	G	4008.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;MQRankSum=-0.119;QD=24.59;ReadPosRankSum=-0.951;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:2,161:0.99:163
chr17	39741280	rs35849957	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	39742894	rs3826551	G	A	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=43.71;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	39742898	rs11551758	GC	AT	10762.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.60;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	39766504	rs7406899	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;MQ=59.61;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	39767744	rs4796681	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	39767836	rs2100509	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	39871700	rs7220169	G	A	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	39874075	rs7213435	C	A	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	39874137	rs7212417	G	A	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	39874267	rs7218465	T	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	39874283	rs11079007	T	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	39881289	rs8075017	G	C	28382.77	.	AC=2;AF=1.00;AN=2;DB;DP=1111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,1099:1.00:1099
chr17	39881487	rs11869104	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	39883595	rs7216154	T	C	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	39883721	rs7211623	C	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	39883972	rs4796600	C	T	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	39884091	rs4796601	G	C	15732.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-0.807;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,611:1.00:613
chr17	39884246	rs4796602	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	39884419	rs4796692	C	T	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,350:0.99:352
chr17	39884583	rs4796693	G	A	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	39884684	rs4796694	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	39888455	rs3895103	G	C	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr17	39890715	rs4796603	A	T	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	39890876	rs4796604	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	39912145	rs1126821	T	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	39912259	rs141010071	A	AC	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	39912581	rs9890858	A	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=24.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	39913645	rs7216034	T	C	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	39914957	rs73983658	G	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr17	39923614	rs12942034	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	39925925	rs7405731	A	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	39959189	rs1065029	C	G	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	39959511	rs3809877	C	T	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.434;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	39977862	rs8072866	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	39983644	rs9896766	A	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	39983808	rs1046404	G	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	39983820	rs1046403	G	A	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	39983849	rs1128966	G	C	5193.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=1.949;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,202:0.99:204
chr17	39987130	rs4796712	T	C	9504.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	39988601	rs7208062	C	T	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	39991790	rs1319763	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	39991867	rs3039772	A	ATATC	5558.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	39991988	rs1865841	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	39998141	rs1529933	C	T	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	40003421	rs4796721	C	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	40003762	rs370591937	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.564;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr17	40010979	rs3744782	G	A	11432.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	40024023	rs7217218	A	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	40024868	rs57604811	AG	A	56.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=-1.732;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	40024895	rs8079008	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	40025264	rs9912300	G	T	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	40025285	rs9914829	A	G	8223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.508;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=3.172;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=1.292;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:1,327:1.00:328
chr17	40025453	rs3744779	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	40025670	rs3744780	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	40027869	rs1808787	A	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	40028450	rs8071627	A	T	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	40028541	rs8071753	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	40028568	rs8071234	C	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	40048613	rs8065502	A	G	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	40049171	rs4796735	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	40049473	rs4796736	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	40053021	rs11652326	T	C	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	40058204	rs3816121	C	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.21;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	40058212	rs3816122	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.41;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	40068613	rs2304499	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	40075058	rs182189366	C	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	40101597	rs35481109	CA	C	284.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.612;QD=12.38;ReadPosRankSum=0.274;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr17	40104384	.	CA	C	37.90	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=7.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	40105401	rs77012779	T	TATG	4906.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	40118807	rs4432296	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	40123829	rs12602950	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr17	40146970	rs6503679	G	A	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	40152431	rs374909941	CT	C	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	40152451	rs73983694	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	40169519	rs4796758	G	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	40173851	rs9894001	A	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	40179983	rs73983697	T	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	40180910	rs7208473	G	A	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	40181159	rs7210636	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	40183707	rs75049227	G	C	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	40186128	rs4277396	C	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	40190157	rs8066861	G	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	40215180	rs4796765	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	40255812	rs2074160	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	40257163	rs2074158	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	40259980	rs2074154	A	T	15231.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr17	40270040	rs146062629	G	GGA	2599.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.144;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.33;ReadPosRankSum=0.000;SOR=0.478;set=HC	GT:AD:AF:DP	1/1:3,75:0.96:78
chr17	40270053	rs35478347	C	A	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	40270081	rs12952244	A	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	40270119	rs71835160	GGAGA	G	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	40270238	rs2074164	G	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	40271757	rs730086	G	A	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	40271970	rs8072215	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	40272406	rs35184688	G	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	40272594	rs2285657	C	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr17	40274873	rs1122326	A	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	40277941	rs113741264	T	C	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	40278081	rs2240010	T	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	40280291	rs2230326	G	A	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	40280944	rs739637	G	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	40337347	rs9902709	A	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	40353722	rs2230097	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	40359539	rs145076987	ACAC	A	1579.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.96;MQRankSum=3.455;QD=24.29;ReadPosRankSum=1.043;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:6,59:0.91:65
chr17	40375658	rs7213630	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	40384208	rs80041287	C	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr17	40441680	rs143393929	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	40441819	rs8067443	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	40447500	rs7217884	T	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	40451643	rs8072785	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	40451844	rs141010733	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=25.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	40452675	rs2293157	C	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	40462796	.	TTG	T	33.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,6:0.15:39
chr17	40469180	rs8069115	G	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	40475650	rs3830585	G	GA	5604.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr17	40481529	rs2293152	G	C	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	40490539	.	T	G	393	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=2;MGOF=139;MMLQ=27;MQ=58.27;NF=15;NR=1;PP=393;QD=26.7357007842;SC=GAATACTCCTTGACCTGAGGG;SbPval=0.64;Source=Platypus;TC=16;TCF=15;TCR=1;TR=16;WE=40490547;WS=40490532;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	40490559	.	G	T	535	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=84;MMLQ=27;MQ=58.68;NF=21;NR=5;PP=535;QD=21.9142774057;SC=GAATACTCCTGGACCTGAGGG;SbPval=0.54;Source=Platypus;TC=27;TCF=22;TCR=5;TR=26;WE=40490567;WS=40490549;set=Platypus	GT:AD:AF:DP	1/1:1,26:0.96:27
chr17	40619937	rs4796668	A	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	40639422	rs8069972	G	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	40642452	rs9899168	T	C	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	40689455	rs659497	T	C	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	40689613	rs2071046	G	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	40696233	rs86312	C	G	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	40699291	rs607740	G	A	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	40699332	rs607795	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	40699475	rs67843205	G	GC	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	40700448	rs2854973	C	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	40719107	rs116090103	C	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	40723391	rs2010750	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	40737117	rs4792992	G	A	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	40744320	rs4793253	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	40812797	rs3835175	C	CT	2101.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	40817448	rs3817331	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	40817990	rs7225374	G	A	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	40822308	rs8071056	C	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	40826525	rs35595844	AAGG	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	40848342	.	ATTT	A	42.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=1.282;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr17	40850552	.	CGT	C	114	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=78;MMLQ=24;MQ=55.82;NF=2;NR=1;PP=114;QD=39.0;SC=TCAAAGAGTGCGTGTGTGTGT;SbPval=0.42;Source=Platypus;TC=9;TCF=4;TCR=5;TR=3;WE=40850561;WS=40850542;set=Platypus	GT:AD:AF:DP	1/0:6,3:0.33:9
chr17	40881033	.	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.541;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr17	40912760	rs1078523	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	40913366	rs9892728	C	T	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	40931054	rs3744239	T	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	40945873	rs115916034	G	A	1421.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	40945874	.	CT	C	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.214;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr17	40951107	rs61995867	C	A	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr17	40957708	rs139359998	CATT	C	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	40957849	rs61995868	G	A	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	40957885	rs61995870	C	T	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	40961445	rs61995871	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	40972669	rs9890617	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	40986454	.	GGA	G	55.73	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,8:0.17:47
chr17	40996617	rs35154433	T	C	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:4,266:0.99:270
chr17	41004681	rs2229596	C	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	41007334	rs34472078	G	C	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	41008357	rs8078145	A	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	41046440	rs324079	T	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	41063466	rs2229611	T	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	41103938	rs534720	T	C	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	41108004	rs59362389	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	41113543	rs2670865	C	G	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	41116234	rs690941	G	A	9342.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr17	41116291	rs11278824	CAGCCCT	C	5080.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	41116565	rs690971	G	T	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr17	41116680	.	C	A	30	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=10;HapScore=2;MGOF=45;MMLQ=20;MQ=56.79;NF=0;NR=5;PP=30;QD=12.9542425094;SC=AGGAAAAAAACAAACAAACAA;SbPval=1.0;Source=Platypus;TC=18;TCF=6;TCR=12;TR=5;WE=41116688;WS=41116670;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr17	41116723	rs690979	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	41121207	rs373590793	GGGGC	G	3654.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=43.51;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	41121209	.	GGC	G	629	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=4;HapScore=1;MGOF=6;MMLQ=18;MQ=60.64;NF=3;NR=31;PP=629;QD=19.2941176471;SC=TCATCCTGGGGGCGGGGGGGA;SbPval=0.57;Source=Platypus;TC=34;TCF=3;TCR=31;TR=34;WE=41121226;WS=41121197;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	41121218	.	G	GAA	2526.73	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=33.69;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	41122443	rs2670866	T	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	41131622	rs34584554	C	T	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr17	41131645	rs35444712	C	A	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr17	41132578	rs692074	T	C	235.96	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr17	41133071	rs1708875	T	C	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	41133242	rs550285	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr17	41150983	rs691954	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	41154817	rs11871636	A	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	41164126	rs692651	A	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	41165262	rs73983784	G	A	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	41165432	rs73983785	T	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	41165493	rs588703	A	G	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	41165734	rs443759	C	T	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	41165878	rs13229	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	41170898	rs429464	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	41170943	rs55845054	GTAA	G	760.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	41177808	rs10451258	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	41215805	rs8176259	CA	C	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	41244936	rs799917	G	A	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr17	41256074	rs368252296	CA	C	290.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-2.283;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr17	41262604	.	CAA	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.76;ReadPosRankSum=0.274;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr17	41277187	rs799905	G	C	15758.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-0.681;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:6,634:0.99:640
chr17	41327684	rs10684756	C	CTG	4356.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	41332804	rs9904555	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	41354888	rs17527933	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr17	41361881	rs11322550	AT	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=1.833;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr17	41454935	rs2061873	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	41458614	rs9890403	A	G	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	41458728	rs9907347	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	41465968	rs377041387	T	C	6597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.701;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=21.717;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.617;QD=17.50;ReadPosRankSum=-11.074;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:217,160:0.42:377
chr17	41465970	rs371420425	A	G	6395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.564;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=13.323;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.666;QD=17.01;ReadPosRankSum=-10.288;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:218,158:0.42:376
chr17	41465973	.	A	C	6186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.998;ClippingRankSum=0.000;DP=386;ExcessHet=3.0103;FS=7.519;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.581;QD=16.32;ReadPosRankSum=-9.118;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:217,162:0.43:379
chr17	41465975	rs142037739	T	C	6108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.493;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=6.102;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-5.539;QD=16.65;ReadPosRankSum=-8.851;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:213,154:0.42:367
chr17	41465989	rs147059896	A	G	6183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.157;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=9.293;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-5.326;QD=16.53;ReadPosRankSum=-7.432;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:210,164:0.44:374
chr17	41465993	rs145825652	T	C	6458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.610;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=11.265;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.074;QD=17.50;ReadPosRankSum=-7.352;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:203,166:0.45:369
chr17	41465994	.	T	C	6447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.203;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=13.303;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.062;QD=17.52;ReadPosRankSum=-7.282;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:202,166:0.45:368
chr17	41466000	.	C	CGAGGGG	7320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.088;ClippingRankSum=0.000;DP=386;ExcessHet=3.0103;FS=25.771;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-4.796;QD=19.42;ReadPosRankSum=-6.567;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:202,175:0.46:377
chr17	41466002	.	C	CGAG	7533.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.565;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=41.926;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-4.273;QD=20.04;ReadPosRankSum=-4.771;SOR=1.780;set=HC	GT:AD:AF:DP	0/1:203,173:0.46:376
chr17	41466003	.	T	G	7080.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.903;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=50.838;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.833;QD=19.14;ReadPosRankSum=-3.884;SOR=1.961;set=HC	GT:AD:AF:DP	0/1:201,169:0.46:370
chr17	41466007	.	C	CG	7122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.462;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=53.382;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.792;QD=19.25;ReadPosRankSum=-3.143;SOR=1.984;set=HC	GT:AD:AF:DP	0/1:199,171:0.46:370
chr17	41466009	.	GC	G	11971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.914;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=64.692;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.855;QD=32.10;ReadPosRankSum=-2.965;SOR=2.112;set=HC	GT:AD:AF:DP	0/1:196,177:0.47:373
chr17	41466019	.	T	G	12349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.687;ClippingRankSum=0.000;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.758;QD=25.15;ReadPosRankSum=-7.557;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:188,303:0.62:491
chr17	41466022	rs79526563	G	C	12144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.363;QD=24.63;ReadPosRankSum=-5.601;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:187,306:0.62:493
chr17	41466035	rs79889672	A	C	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:160,328:0.67:488
chr17	41466049	rs62080661	A	G	13509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.459;QD=29.56;ReadPosRankSum=-0.649;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:119,338:0.74:457
chr17	41466055	rs62080662	G	C	13419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.804;QD=30.50;ReadPosRankSum=0.104;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:108,332:0.75:440
chr17	41466096	rs62080664	A	G	6556.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:58,283:0.83:341
chr17	41466108	rs62080665	G	C	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:40,256:0.86:296
chr17	41466120	rs66825422	GCGGCGCATGGA	G	6501.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:33,189:0.85:222
chr17	41522213	rs7207008	T	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	41561601	rs140026870	CGGAAGGA	C	8173.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr17	41622398	rs61114325	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	41622562	.	C	CGTGTGT,CGTGTGTGT	1131.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;QD=37.72;SOR=1.893;set=HC	GT:AD:AF:DP	1/2:3,16,11:0.53,0.37:30
chr17	41719477	rs28729140	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	41721202	rs35674347	T	C	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	41846964	rs1230403	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	41901281	rs114118433	G	A	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	41930569	rs4793040	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	41931375	rs12453522	A	G	10071.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr17	41931511	rs73320354	G	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	41939339	rs16940274	C	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	41955158	rs231521	A	G	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	41958816	rs67843533	C	T	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	41959808	rs124721	T	C	22029.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,847:1.00:847
chr17	41960633	rs412849	CG	GC	10227.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	41961451	rs231518	T	C	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	41994696	rs61455159	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	41994792	rs61231498	T	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	42018541	rs7215698	T	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	42030528	rs61612861	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	42030531	rs1058046	G	C	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	42030743	rs229969	G	C	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	42031331	rs2070592	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	42035215	rs73986647	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	42083840	rs228770	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42085150	rs228773	T	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	42085972	rs186636	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	42155838	rs9913925	G	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	42170181	rs67111880	TG	T	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=26.87;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	42188298	rs35223928	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	42225547	rs227584	A	C	10349.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr17	42232442	rs2246287	C	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	42239349	rs730228	T	C	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	42248346	rs7218599	A	T	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	42249717	rs10628218	A	ATG	806.76	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr17	42254011	rs7220138	C	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	42254281	rs7212573	A	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	42254417	rs7212854	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	42254527	rs7217858	T	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	42255097	rs3826412	T	C	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	42264962	rs4793082	A	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	42266218	rs2240226	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	42266224	rs8073555	G	C	95.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	42267949	rs9895154	G	A	15479.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:1,601:1.00:602
chr17	42268274	rs757430	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42287519	rs2071167	C	T	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	42288128	rs2526011	T	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	42294198	rs2269908	G	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	42294215	rs2269907	G	A	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	42392042	.	TGGG	T,TG	969.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.52;SOR=1.536;set=HC	GT:AD:AF:DP	1/2:2,10,22:0.29,0.65:34
chr17	42392077	rs68030960	T	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	42392622	rs708386	T	C	7781.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr17	42398052	rs2011951	A	G	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	42398656	rs79622469	C	T	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	42398757	rs2011895	C	A	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	42430244	rs5848	C	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	42431902	rs145834427	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	42454270	rs850731	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	42454973	rs35735980	C	A	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	42475983	rs936019	G	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	42744238	rs9907151	A	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	42745413	rs61745789	T	C	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	42745666	rs114536199	C	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	42751607	rs6416902	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	42808491	rs16970956	G	A	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	42814018	rs16970963	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	42824648	rs9893320	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	42846994	rs8070918	T	C	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	42849094	rs114458198	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	42850941	rs12450742	T	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr17	42851634	rs62066014	G	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	42851729	rs35936481	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42852604	rs1558083	G	T	14445.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	42852610	rs1558084	T	C	14675.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	42853427	rs4792955	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	42854053	rs55752145	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	42854610	rs8075210	T	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	42855248	rs2070603	T	C	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	42855472	rs2070604	T	C	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	42855554	rs2070605	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	42857430	rs35504352	G	A	14168.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr17	42857517	rs16970986	C	T	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	42882280	rs2229395	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,212:0.98:216
chr17	42925559	rs12164	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	42927628	rs2231647	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	42929970	rs2289673	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	42932244	rs2289672	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	42934372	rs6503405	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	42934694	rs2277615	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	42945296	rs2120276	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr17	42945867	rs3785890	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	42953409	rs2289674	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	42957139	rs2289676	C	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	42957855	rs1443463	A	G	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	42961009	rs2289677	C	T	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	42979592	rs12451394	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42989088	rs2289681	C	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	43003484	rs3169733	T	C	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	43101700	.	TGTGTGTGG	T	111.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.16;ReadPosRankSum=1.899;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr17	43101702	.	TGTGTGG	T	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-1.899;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr17	43102088	rs145143667	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	43111162	rs9303432	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	43111688	rs9900173	G	A	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	43163756	rs6416904	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	43170907	rs2239921	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	43175906	rs2239922	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	43181287	rs4793167	A	G	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	43182810	rs2239924	T	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	43183028	rs1053733	G	A	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	43191006	rs2285427	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	43192549	rs35911033	T	TC	9196.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	43192821	rs713101	A	G	11987.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=1.759;SOR=0.553;set=HC	GT:AD:AF:DP	1/1:1,462:1.00:463
chr17	43196546	rs4362432	G	A	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	43198166	rs11382448	A	AG	2486.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	43213772	rs2306828	A	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	43219912	rs72628318	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=24.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	43219921	.	CTT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.551;QD=2.07;ReadPosRankSum=-0.367;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr17	43227766	rs78243847	T	TTTGG	1471.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	43308183	rs58744688	A	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	43314515	rs35156005	TG	T	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	43316520	rs1023995	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	43318778	rs7218169	GC	CG	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	43319434	rs372669041	TCCG	T	8104.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	43323443	rs5820573	GCCC	G	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	43333219	rs114473694	C	T	11217.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	43333785	rs76453679	AAGAC	A	4324.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	43334649	rs60163605	C	A	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	43334653	rs58314091	T	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	43334725	rs115263394	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	43339339	rs9909384	A	G	5230.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.821;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=9.518;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=0.550;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:3,216:0.99:219
chr17	43345079	rs11867907	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	43364293	rs56405343	C	CG	9856.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	43366854	rs149318591	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	43522812	rs10221250	C	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.500;MQ=47.73;MQRankSum=0.846;QD=16.19;ReadPosRankSum=-0.862;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr17	43679196	.	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	43679277	.	G	T	970.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.46;QD=26.24;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	43910402	rs17689948	G	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.54;QD=26.70;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	43911224	rs73984622	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=30.59;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	43923898	rs171443	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.65;QD=28.23;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	43924337	rs12373168	A	C	446.41	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr17	44408406	.	A	G	958.77	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.61;QD=29.05;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	44564345	.	T	C	275.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.16;QD=27.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	44827044	rs144599950	A	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	44950122	rs4968281	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	44953856	rs754474	G	C	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	45012248	rs169126	T	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	45127217	.	AAC	A	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.821;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=57.895;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-16.181;QD=0.98;ReadPosRankSum=-10.695;SOR=6.358;set=HC	GT:AD:AF:DP	0/1:383,48:0.11:431
chr17	45198343	rs731790	C	T	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	45214519	rs74348171	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-12.173;QD=0.87;ReadPosRankSum=-6.279;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:205,20:0.09:225
chr17	45214527	rs62075618	T	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-12.527;QD=1.46;ReadPosRankSum=-5.130;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:201,24:0.11:225
chr17	45214558	rs77685276	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-11.429;QD=0.50;ReadPosRankSum=1.129;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:144,25:0.15:169
chr17	45214604	rs75661039	AT	TC	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-8.683;QD=4.89;ReadPosRankSum=-1.973;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr17	45214643	.	A	T	73	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=3;MGOF=27;MMLQ=27;NF=3;NR=3;PP=73;QD=17.9618687579;SC=AATTTGGATCAACTTGGATAG;SbPval=0.25;Source=Platypus;TC=31;TCF=9;TCR=22;TR=6;WE=45214651;WS=45214621;set=Platypus	GT:AD:AF:DP	1/0:25,6:0.19:31
chr17	45214685	rs11570543	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	45234303	rs200611688	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-4.022;QD=1.12;ReadPosRankSum=-1.723;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:70,10:0.12:80
chr17	45234406	rs112848754	CA	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=52.63;MQRankSum=-1.547;QD=10.89;ReadPosRankSum=-1.580;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr17	45234420	rs78493795	T	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=-4.634;QD=12.43;ReadPosRankSum=-1.427;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr17	45234760	rs11372544	C	CA	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.783;QD=8.58;ReadPosRankSum=-0.122;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr17	45266432	rs11079761	C	G	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	45291103	rs11327482	TG	T	3914.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	45300218	rs4968309	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	45331501	.	G	A	296.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	45363546	rs35265764	G	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	45364722	rs2292865	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	45367681	rs2292864	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	45368337	rs15908	A	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	45369777	rs4642	A	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	45369789	rs4634	G	A	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	45422605	rs80014939	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	45425144	rs3851808	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	45438690	rs56100955	G	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	45447634	rs55756546	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	45451894	rs4968318	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	45456460	rs3736439	A	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	45456549	rs150727372	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	45468842	rs72825679	A	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	45468871	rs75090710	A	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	45479687	rs144400242	T	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	45486816	rs3830478	CCAAGTA	C	302.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	45490251	rs3883318	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	45503346	rs7342870	A	T	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	45568523	.	T	G	3393.77	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=25.33;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	45569815	rs2610367	A	G	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	45569850	rs138621300	A	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	45569957	rs111925142	C	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	45623409	.	G	GGT	784.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=1.252;QD=10.19;ReadPosRankSum=0.541;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:38,39:0.51:77
chr17	45623439	.	TGA	T	47.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=1.485;QD=0.63;ReadPosRankSum=0.692;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:64,12:0.16:76
chr17	45623441	rs181591349	A	T	1127.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=5.312;QD=15.04;ReadPosRankSum=4.075;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:28,47:0.63:75
chr17	45663680	rs372546318	GTA	G	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.713;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=0.755;QD=3.58;ReadPosRankSum=-2.507;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr17	45664593	rs140005328	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-10.264;QD=1.16;ReadPosRankSum=3.973;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:185,32:0.15:217
chr17	45668303	.	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=48.83;MQRankSum=-4.519;QD=1.68;ReadPosRankSum=-2.540;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:279,64:0.19:343
chr17	45668320	.	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-4.397;QD=1.84;ReadPosRankSum=-2.497;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:123,27:0.18:150
chr17	45668339	rs2610294	T	G	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.316;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.043;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-6.230;QD=5.11;ReadPosRankSum=-5.529;SOR=1.989;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr17	45669428	rs59875832	T	TAAA	2130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=89.524;MLEAC=1;MLEAF=0.500;MQ=51.18;MQRankSum=-11.658;QD=9.69;ReadPosRankSum=-7.233;SOR=6.091;set=HC	GT:AD:AF:DP	0/1:141,79:0.36:220
chr17	45669444	rs111230318	A	G	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.934;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=74.386;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-10.918;QD=3.75;ReadPosRankSum=-7.951;SOR=6.722;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr17	45673921	.	C	T	511.77	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	45677208	rs181630616	G	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	45690029	rs35841962	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.728;QD=2.38;ReadPosRankSum=-0.564;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr17	45700384	rs3065062	C	CCTA	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	45734148	.	A	AAT	836.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	45734209	rs68149542	CTTT	C	2991.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	45741473	rs182448261	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr17	45742233	rs56226803	T	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	45750590	.	A	G	3034.77	.	AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=42.15;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	45750596	rs3809868	G	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=45.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	45750626	.	TTAAG	T	998.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	45754569	rs11301979	AC	A	1199.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=34.28;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	45755810	rs4239162	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	45757343	rs199792110	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	45757598	rs7210738	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	45759767	rs7223246	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	45774072	rs8078309	T	C	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	45822579	rs12721470	G	A	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	45885687	rs9907142	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	45885756	rs9911983	C	T	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	45888251	rs2074188	C	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	45890898	rs55928544	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	45894735	rs9914156	A	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	45896478	rs878171	T	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	45897502	rs61622029	G	A	13747.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=-0.546;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:2,532:1.00:534
chr17	45897531	rs1985407	C	A	12551.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.874;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.038;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:2,486:1.00:488
chr17	45905850	rs4793671	C	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	45908653	rs56409623	T	A	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	45915788	rs7350974	T	C	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr17	45916018	rs35901087	C	G	9215.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	45994044	rs2228253	C	T	14864.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,560:1.00:560
chr17	45994094	rs2228251	T	C	13084.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	46023163	rs9894340	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	46048157	rs2525084	A	G	363.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	46048165	rs2597168	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	46048168	rs2255697	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	46048412	rs2285860	G	T	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	46048592	rs2905846	A	G	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	46048858	rs2525085	C	G	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	46052793	rs2597172	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	46054264	rs2525087	C	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr17	46055106	rs2597173	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	46055347	rs2875746	A	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	46055435	rs71366815	G	GTTT	140.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.12;ReadPosRankSum=0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr17	46056455	.	A	G	642.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	46110044	rs115870363	T	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	46115122	.	A	AG	501	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=24;MQ=59.77;NF=1;NR=10;PP=501;QD=49.4545454545;SC=GGACGTGGCCAGCCTCGGGCC;SbPval=0.61;Source=Platypus;TC=12;TCF=1;TCR=11;TR=11;WE=46115130;WS=46115112;set=Platypus	GT:AD:AF:DP	1/1:1,11:0.92:12
chr17	46132212	rs373501023	T	TG	1054.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;MQ=60.29;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	46135645	rs76434554	C	T	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	46152333	rs2875747	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	46152559	rs35354810	C	CT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.358;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr17	46190819	rs8080662	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	46190910	.	G	GTT	408.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	46190928	rs12601675	T	C	417.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	46190929	rs12602948	G	A	417.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	46198876	rs3744346	G	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	46239985	rs208005	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	46262171	rs2278868	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	46440998	rs80339077	G	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	46607021	rs7226137	T	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	46620301	rs79499476	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	46620619	rs35384218	G	A	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	46620688	rs34801978	G	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	46622335	rs111979968	A	AC	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	46651061	rs2288277	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	46651340	rs372107693	C	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	46654435	rs79154089	A	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	46655142	rs151227265	A	AC,ACCC	529.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	0/1:0.83:29
chr17	46669430	rs9299	C	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	46670520	rs7406798	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	46688256	rs7406910	T	C	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	46799812	rs1054072	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	46805221	rs9899142	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	46805590	rs8556	G	A	9701.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	46840178	rs12936178	T	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	46847364	rs2032844	C	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	46847575	rs11868085	C	T	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	46862333	rs114353344	G	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	46862686	rs200384099	GTC	G	132	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.00;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	46863468	rs138499306	G	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	46878577	rs145663465	AGG	A	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	46881748	rs489005	T	C	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	46926772	rs551605	A	G	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	46970836	rs684682	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	46973139	rs35074390	TG	T	2216.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	46985756	rs71144541	AG	A	570.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	46993396	rs142959616	CT	C	1872.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	47000251	rs1058018	C	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	47000320	rs73329977	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	47010535	rs59445943	G	A	526.22	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr17	47014571	rs73332250	T	C	12181.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	47014675	rs2132201	C	T	9294.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	47014754	rs2132200	T	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	47018293	rs34165903	C	T	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	47038391	rs6504587	T	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	47038471	rs4794004	A	G	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	47039254	rs2291726	T	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr17	47076551	rs2411760	G	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	47103981	rs200023769	TCCTTCCTTCCTTCCTG	T	678.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=64.04;MQRankSum=-0.619;QD=28.28;ReadPosRankSum=0.000;SOR=2.330;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr17	47120776	rs2289636	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	47122525	rs8068981	T	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	47210429	rs7207842	A	G	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	47237791	rs114803982	A	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	47237802	rs1523137	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	47238028	rs8071836	C	T	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	47241604	rs8074457	T	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	47243622	rs16970025	G	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	47280301	rs4794029	T	C	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	47293848	rs2233368	C	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	47297297	rs616338	T	C	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	47329705	rs596783	T	C	11713.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	47486684	rs2277637	T	C	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr17	47490726	rs2233663	C	T	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr17	47579417	rs4794056	C	T	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	47688881	rs140209761	T	TAGAG	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	47778793	rs8186	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	47779288	.	CA	C	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=1.256;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:73,48:0.40:121
chr17	47780710	rs10595474	GCA	G	1704.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=-1.847;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr17	47780714	rs79789286	A	G	2431.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.74;ReadPosRankSum=1.147;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:3,67:0.96:70
chr17	47780714	.	ACA	GCG	1655	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=21;MQ=59.35;NF=11;NR=25;PP=1655;QD=47.4574409684;SC=ATGTGCGCACACACACACACA;SbPval=0.67;Source=Platypus;TC=51;TCF=17;TCR=34;TR=36;WE=47780724;WS=47780700;set=Platypus	GT:AD:AF:DP	1/1:15,36:0.71:51
chr17	47780716	rs200689359	A	G	1174.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.741;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:6,53:0.90:59
chr17	47785064	rs9908959	C	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	47801651	rs11079874	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	47869193	rs77004615	G	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	47888852	rs4462645	A	G	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	47923640	rs11297059	AT	A	302.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.537;QD=9.45;ReadPosRankSum=0.502;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr17	48068720	rs8081044	T	A	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	48069284	rs75107289	C	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	48072225	rs33937843	G	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	48072426	rs2278163	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	48157827	.	GGT	G	72.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr17	48172779	rs7221362	A	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	48184288	rs847694	G	A	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	48184377	rs847693	A	G	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	48186131	rs3059824	T	TCTC	3642.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	48202135	.	G	GCGCA,GCGCACA	109.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=12;set=Intersection	GT:AF:DP	0/1:0.78:9
chr17	48212647	rs11317638	GA	G	1239.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.42;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	48212910	rs3744535	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	48216944	rs1569116	C	T	10227.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	48226445	rs112058541	G	GC	2174.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	48227384	.	G	GGC	5207.73	.	AC=2;AF=1.00;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	48227403	.	G	GGC	3742.73	.	AC=2;AF=1.00;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	48243504	rs9911548	C	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	48245180	rs2696297	C	T	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	48247689	rs1801191	C	T	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:3,343:0.99:346
chr17	48252804	rs2696288	T	C	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	48253226	rs73987439	A	G	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	48258140	rs2586484	T	C	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	48258321	rs2586485	C	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	48264717	rs2696245	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	48265426	rs2586488	A	G	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	48265495	rs1800215	T	C	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	48266160	rs138425306	CAG	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=-0.085;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:228,24:0.10:252
chr17	48266669	rs2586489	G	C	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	48267291	rs2075559	G	C	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	48268223	rs2734272	A	G	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	48268341	rs78377092	G	A	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	48268626	rs2696246	A	G	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	48269302	rs2857396	G	A	9797.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	48269426	rs2586490	C	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	48271433	rs1007086	A	G	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	48272055	rs2253369	C	T	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	48273439	rs2734281	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	48273464	rs2141279	T	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	48274291	rs2075555	T	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	48274309	rs2075554	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr17	48276004	rs5820805	G	GC	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.39;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	48276971	rs2256835	G	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	48277059	rs150854949	AGCCCCAGGCCCCAGGCCCCAG	A	4659.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	48354999	rs73987470	C	G	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	48356260	rs6504642	G	C	9909.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr17	48423418	rs9912067	G	C	125.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	48432042	rs11430429	G	GA	2096.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	48432749	rs73344091	G	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	48433081	rs886568	G	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	48433958	rs4794136	T	C	15186.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr17	48440467	.	T	TA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.509;QD=0.89;ReadPosRankSum=1.882;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:245,64:0.21:309
chr17	48440522	rs10656180	T	TCCA	15109.73	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	48445674	rs111380254	CCTGGTCAG	C	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr17	48448023	rs16948951	C	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	48452776	rs3760413	A	C	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	48452978	rs3060668	A	AAGC	10738.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	48457609	rs917028	C	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr17	48472270	rs3760407	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	48504132	rs9901133	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	48539035	rs9674937	T	C	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	48539997	rs8082089	T	C	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	48540960	rs3744522	C	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	48541443	rs2277630	G	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	48541707	rs898455	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	48542572	rs898454	C	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	48546232	rs2412325	G	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	48556228	rs151222980	C	CGCGCT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	48557326	rs2290862	G	A	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	48557348	rs2290861	T	C	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	48559559	rs7210579	A	G	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	48560550	rs5820814	A	AAAAAAAG	182.76	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.82;QD=30.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	48560883	rs1551717	A	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	48562047	rs72834177	T	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	48595109	rs56994118	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	48595988	rs8064455	G	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	48598785	rs1380657	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	48599195	rs9893172	T	C	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	48599450	rs7216625	A	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	48602098	.	T	TGTGAGA,TGTGAGAGA	851.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=23;set=Intersection	GT:AF:DP	1/1:1.00:21
chr17	48606537	rs1133818	C	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	48606606	rs4793659	G	A	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	48607280	rs6504671	G	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	48608717	rs1064055	T	C	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	48610272	rs755046	G	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	48613837	rs3785915	A	G	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr17	48616114	rs4794158	C	G	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	48618106	rs7215760	A	G	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	48618445	rs7214535	G	A	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	48619249	rs4794159	C	A	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	48624523	rs9890200	A	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	48625828	rs8076470	C	T	15858.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr17	48625928	rs8076632	C	G	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	48626389	rs8077316	C	T	10247.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	48626398	rs8077323	C	T	10387.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	48626575	rs8077587	C	T	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	48626626	rs8076628	G	A	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	48627860	rs10586811	CCT	C	6811.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	48628092	rs1132414	A	G	8035.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	48628470	rs9913430	T	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	48628581	rs9913677	T	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	48629312	rs8082568	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	48629458	rs8065903	A	G	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr17	48631607	rs739924	T	C	11966.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	48631857	rs873839	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	48646376	.	T	TGTGTGTGGTG,TGTGTGTGTGGTG	1488.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.27;QD=45.11;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:0,10,23:0.30,0.70:33
chr17	48652875	rs198550	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	48668013	rs8064333	G	C	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	48668021	rs34926473	AT	A	5371.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	48668091	rs8066026	A	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	48668653	rs7359536	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	48668720	rs7359527	C	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	48678325	rs198530	A	T	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	48703986	rs9893223	G	A	10261.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	48712705	rs12604031	G	A	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	48712711	rs9890046	C	G	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	48746135	rs879459	C	T	6941.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	48746923	rs4794176	G	C	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	48752600	rs4148415	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	48752866	rs2072365	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	48752890	rs2072366	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	48777806	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.818;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr17	48777821	rs200307796	AG	A	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.350;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr17	48777822	rs6504677	G	A	218.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.708;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr17	48797210	rs11398903	T	TG	5668.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=34.99;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	48821201	rs9894501	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	48823815	rs2302288	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	48828384	.	GT	G	416.73	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr17	48834023	rs3760403	A	G	51.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	48834032	rs3760402	G	A	51.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	48834080	rs9303561	A	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	48917333	rs9675120	C	T	15597.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr17	48940422	rs4626	T	C	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	49041948	.	C	CA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.000;QD=11.52;ReadPosRankSum=1.158;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr17	49060008	rs74915161	A	G	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	49067763	rs9899816	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	49071146	rs115371969	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	49091746	rs59713190	CA	C	3412.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr17	49124845	rs11400140	G	GA	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	49197654	rs5820842	A	AC	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.95;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	49231623	rs34431255	C	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	49231627	rs11556835	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	49237562	rs2041296	C	T	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	49239036	rs2159359	C	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	49245901	rs3744660	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	49258140	rs200155927	TAC	T	1615.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	49278902	.	AT	A	1002.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	49280307	rs80042289	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	49337867	rs114131498	G	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	49337883	rs116316923	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	49340637	rs28379319	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	49357897	rs9903174	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr17	49366052	rs79439595	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	49371505	rs917654	C	G	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	49567749	rs12603818	T	C	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	49567908	rs114148352	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	49711045	rs2286634	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr17	49713428	rs139939914	GACAT	G	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	51900268	rs113521969	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr17	51901084	rs3803825	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	51901643	rs4561518	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	51901703	rs4561519	C	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	51902252	rs3826355	C	T	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	51902492	rs10693171	A	AAAT	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	52982981	.	AC	A	626.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	52992128	rs3834969	TA	T	6942.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=33.22;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	52992245	rs12601712	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	52993346	rs2934935	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	53007655	rs12939352	T	G	412.90	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr17	53014186	rs76481432	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	53014442	rs71361740	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.510;QD=0.33;ReadPosRankSum=0.377;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr17	53076799	rs1156287	G	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	53076986	rs11658717	G	A	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	53124546	.	CGT	C	373.27	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr17	53342796	rs10635027	G	GTTTC	7281.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	53392852	rs2287223	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	53478675	rs3744308	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	53828678	rs111819298	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	53828706	rs890488	C	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	53828875	rs183161401	A	G	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	53851071	rs2960063	A	G	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	53851078	rs2912558	T	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	53851228	rs2960062	C	T	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	53852111	rs2960061	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	54428089	rs112248650	GGT	G	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	54517855	rs7224536	T	C	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	54520199	rs16957230	T	C	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	54526285	rs8082447	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	54534634	rs10852985	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	54554821	.	CTT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.417;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr17	54558249	.	G	GGTGTGT	336.74	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	54558284	rs11079234	A	G	321.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	54872391	rs55815590	A	G	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	54872439	rs72837329	T	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr17	54872555	rs72837330	C	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	54872595	rs72837331	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.49;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	54872604	rs72837332	C	T	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.06;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	54872614	rs72837333	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.62;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	54892126	rs4794668	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	54892348	rs72837358	G	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	54912339	rs1048159	G	A	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	54912737	rs7225724	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	54925262	rs6503775	G	T	679.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.832;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=-0.532;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr17	54925480	.	CAT	C	126.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr17	54990652	rs59740850	C	CT	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	55019580	rs2240214	A	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	55026912	rs12942251	A	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	55027850	rs8071691	T	C	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	55038062	rs9899845	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	55055482	rs73313810	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	55058689	rs3095499	G	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	55065558	rs11437466	T	TA	1547.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.35;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	55074482	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.793;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr17	55075630	rs148137974	C	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	55075670	.	C	CA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.693;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:79,38:0.32:117
chr17	55075941	rs116631490	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	55189723	rs3094444	T	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr17	55334577	.	GCC	G	168.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	55363421	rs11079286	G	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr17	55606875	rs55990806	G	GT	1050.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=21.44;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	55674423	rs6503820	G	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	55704465	rs1861474	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	55822122	rs115612632	C	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	55948515	rs144693081	G	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	55950300	rs2304943	T	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	55950826	rs11650742	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	55957058	rs149845264	C	G	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	56166499	rs16942662	T	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	56232459	rs145787234	TTTTG	T	2252.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	56233034	rs7218964	C	A	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr17	56233499	rs3863502	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	56235322	rs1987665	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	56247101	rs60994383	C	A	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	56270442	rs11079339	A	G	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	56272390	rs2240815	A	G	11728.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr17	56276940	rs35750729	A	C	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	56277187	rs34630974	T	G	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	56283449	rs11548967	C	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	56289545	rs3213698	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	56290334	rs3826300	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	56290556	rs3744105	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	56294141	rs73329636	C	T	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	56296368	rs73329640	G	T	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	56344656	rs8178407	A	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	56351708	rs67661903	AGTGTGTGT	A	170.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	56357818	rs7208693	C	A	8895.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	56388626	rs9674726	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	56435885	rs2526374	G	T	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	56492800	rs3744093	T	C	9760.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr17	56544280	rs1017089	T	G	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	56569842	rs75741842	T	TGA	9967.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	56580997	rs1860262	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	56581651	rs4277402	C	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	56584205	rs2302189	A	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	56585872	rs3744108	G	C	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr17	56591835	.	G	A	542.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=-0.964;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr17	56598213	rs10719315	GA	G	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	56598439	rs1057068	T	C	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	56603934	.	A	AACAC	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.63;ReadPosRankSum=1.085;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr17	56603978	rs2079703	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	56609525	rs11869828	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	56621286	rs8071623	G	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	56621359	rs6503867	T	C	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	56636854	rs7225128	T	C	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	56654690	rs1267542	T	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	57089588	.	G	GCAGCAGCAGCAGCAGCAGCAC	6259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DP=467;ExcessHet=3.0103;FS=2.770;MLEAC=1;MLEAF=0.500;MQ=63.19;MQRankSum=2.276;QD=16.34;ReadPosRankSum=3.335;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:78,305:0.80:383
chr17	57094617	rs4932691	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	57138604	rs114352528	T	C	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	57247249	rs9914425	T	A	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	57274988	rs115631993	G	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.85;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	57287454	rs6503905	A	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	57290383	rs3744383	G	A	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	57292240	rs74665766	T	C	6910.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=2.374;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:2,281:0.99:283
chr17	57297939	rs61738392	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	57311748	rs6503908	C	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.04;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	57322954	rs9912727	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	57326097	rs115654827	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	57334668	rs12450435	C	G	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	57642846	rs10713316	TG	T	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	57652789	rs77178464	C	T	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.76;QD=25.76;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	57663596	.	TAA	T,TA	894.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.956;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.97;MQRankSum=0.527;QD=9.42;ReadPosRankSum=0.976;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:20,33,42:0.35,0.44:95
chr17	57683105	rs146925898	T	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	57685238	.	G	GAT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.183;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr17	57717763	rs67782942	C	CT	585.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.514;SOR=0.675;set=HC	GT:AD:AF:DP	1/1:6,37:0.86:43
chr17	57719568	rs58081210	A	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	57721911	rs111928644	G	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;QD=23.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	57725043	rs8071749	T	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	57733479	rs4349212	T	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	57743691	rs9893154	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	57750982	rs8065248	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	57760379	rs7213568	T	C	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	57937792	.	G	GA,GAA	1243.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.366;SOR=0.821;set=HC	GT:AD:AF:DP	1/2:20,44,35:0.44,0.35:99
chr17	57940977	rs377342839	CA	C	194.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.764;QD=7.50;ReadPosRankSum=-0.083;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr17	57943906	rs35806089	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	57963537	rs1292053	A	G	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	58011498	rs180524	G	T	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	58012768	rs11459613	C	CA	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	58013925	rs9913441	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	58030551	.	CTT	C,CT	404.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.73;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.665;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:5,13,13:0.42,0.42:31
chr17	58031412	rs11368	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	58066607	rs200816848	AT	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.848;QD=1.51;ReadPosRankSum=1.640;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:100,40:0.29:140
chr17	58149745	rs3744375	G	A	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.68;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	58153603	.	C	CA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.415;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr17	58180062	rs8075626	T	C	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr17	58180079	rs8074512	C	G	5549.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr17	58180172	rs8075789	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr17	58234154	rs117154637	A	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	58235343	rs345186	C	T	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	58303313	rs11309727	CA	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-0.698;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr17	58677865	rs16944543	G	A	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	58701192	rs7208331	G	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	58733845	rs79189654	A	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr17	58734335	.	T	C	816.77	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	58786681	rs34712615	A	G	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr17	58786758	.	C	CT	1135.73	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr17	58824567	rs7501675	T	C	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	58945949	rs73320618	G	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	58969056	rs9303430	T	C	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	58987841	rs61340991	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	59067621	rs722681	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	59104637	rs12051671	A	G	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	59104873	rs2191185	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	59111921	rs16944765	C	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	59115477	rs73324823	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	59477903	rs75743672	C	A	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	59480291	rs12937792	T	G	50.18	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.55;QD=25.09;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	59482300	rs8080990	G	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	59489893	rs9907379	T	C	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	59534847	rs145137675	C	T	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:2,347:0.99:349
chr17	59544863	rs758596	G	A	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	59557755	rs112008276	GCC	G	263.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.68;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	59560974	.	A	AGTGTGTGTGTGTGTGTGT	2110	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=30;MMLQ=15;MQ=57.21;NF=0;NR=4;PP=2110;QD=528.25;SC=AAGGTATTCCAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=59560982;WS=59560964;set=Platypus	GT:AD:AF:DP	1/1:4,4:0.50:8
chr17	59760996	rs4986763	A	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	59763114	rs4988357	A	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	59763347	rs4986764	A	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	59763465	rs4986765	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	59857809	rs4988351	C	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	59858089	.	AAAC	A	151.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	59924612	rs4988344	G	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	59955426	rs606072	T	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	59958635	rs73332565	G	T	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	59967387	rs2271576	T	C	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	59989126	rs3744434	A	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	60032650	rs4968463	A	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	60033277	.	CAAGTTA	C	160	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=2;MGOF=33;MMLQ=26;MQ=60.0;NF=0;NR=4;PP=160;QD=46.25;SC=CCTGTAGAACCAAGTTAAAGT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=60033290;WS=60033267;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr17	60038880	rs56723756	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.591;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr17	60040329	rs2278812	C	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	60043884	rs671347	G	A	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	60043929	rs76432344	T	C	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	60070111	rs11375626	G	GT	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	60070140	rs11375627	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=0.648;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr17	60129875	rs4968467	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	60142662	.	C	CG	2032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=4.081;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.769;QD=13.20;ReadPosRankSum=1.940;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:61,93:0.60:154
chr17	60142710	.	G	GC	870.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.28;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	60215748	rs11079465	T	C	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	60316546	rs142362958	T	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	60324448	rs12325728	C	T	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	60324593	rs11079467	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	60351138	rs78496773	G	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr17	60360238	rs10163525	A	G	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	60360261	rs62069132	T	C	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	60363906	rs202158824	G	T	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.03;QD=24.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	60363941	rs148555715	G	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.70;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	60365992	rs149569922	C	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.31;QD=32.92;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	60366741	rs2668983	C	G	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	60366787	rs200284807	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-3.767;QD=1.19;ReadPosRankSum=0.704;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr17	60374173	rs202112984	CT	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-0.271;QD=10.99;ReadPosRankSum=1.283;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr17	60464688	rs9909704	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	60472681	rs139259048	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	60483804	rs116286825	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	60484429	rs8068208	C	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	60501409	rs11543000	A	G	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	60503892	rs2543409	A	G	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	60503921	rs2319055	T	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=30.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	60525136	rs116660710	C	T	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	60651627	rs58923111	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	60651884	rs11314763	GT	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.247;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr17	60654327	rs59523807	CT	C	339.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.572;QD=10.96;ReadPosRankSum=1.576;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr17	60654358	rs4539664	G	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	60768243	rs2465425	A	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	60778932	rs2251393	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	60779025	rs2251391	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	60813245	rs17683602	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	60813765	rs115042182	G	A	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr17	60814504	rs146015773	T	G	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	60814612	rs138762803	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	60837337	rs78457484	G	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	61087073	rs16946713	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	61315272	rs2460111	G	A	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	61432774	rs4968765	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	61457217	rs8065950	G	C	9053.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=3.232;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.586;SOR=0.394;set=HC	GT:AD:AF:DP	1/1:1,361:1.00:362
chr17	61473325	rs2270133	C	A	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	61489968	rs34592714	CT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.657;QD=1.38;ReadPosRankSum=0.225;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:112,46:0.29:158
chr17	61548918	rs4277405	C	T	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	61548948	rs4459609	C	A	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr17	61555182	rs9896551	G	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	61556298	rs4295	C	G	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	61556527	rs4296	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	61557200	rs4298	C	T	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	61560763	rs4311	T	C	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	61560986	rs4312	A	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr17	61561017	rs4313	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr17	61566031	rs4343	G	A	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	61571452	rs4354	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	61571907	rs4358	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	61574492	rs4363	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	61600717	rs71376915	A	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	61611423	rs7225568	T	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	61611475	rs115048320	G	A	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	61612943	.	T	TTGTATGCATGAGTGAACAAAAGCAGGCCTGACTGCACCCTTCCAAGGGCTGACCCCAGCCC	4103.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=341.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61615371	rs4465659	T	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	61615660	rs148485289	T	TG	2230.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	61621330	rs76957877	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	61621805	rs8070334	T	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	61623052	rs35819807	C	T	11710.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr17	61660889	rs66502552	CG	C	6028.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	61710010	rs6504171	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	61729882	rs8080211	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	61735056	rs6504173	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	61763031	rs11658329	G	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	61766880	rs1877316	C	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	61769456	rs7211213	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61776479	rs1877317	T	C	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	61776538	rs3817181	G	C	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	61781980	.	TGGG	T,TGG	86.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	0/1:0.60:5
chr17	61782325	rs9897229	T	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	61783908	rs3817182	A	G	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	61805607	rs2137144	G	A	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	61805747	rs4968597	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	61829157	rs11283431	A	ATAGTGTT	1444.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	61829989	rs3785572	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	61838196	rs374704881	CA	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.188;QD=2.61;ReadPosRankSum=1.114;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr17	61838259	rs11654841	G	A	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	61864325	rs28611775	C	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;QD=25.23;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	61870024	.	A	AT	74.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr17	61877666	rs3833115	AAT	A	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61884120	rs2251164	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	61888693	rs2584629	T	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61889213	rs3217509	G	GA	4798.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=28.56;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	61898063	rs3833114	C	CGCTTGAACCTGGAAGACGG	531.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=44.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61898135	rs2665836	C	A	900.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;MQRankSum=-0.616;QD=18.02;ReadPosRankSum=-0.882;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:6,44:0.88:50
chr17	61899303	rs73333734	C	T	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	61901197	rs2727288	T	A	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	61901439	rs2584627	T	C	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	61901641	rs894407	T	C	10867.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	61901657	rs894406	A	G	11026.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	61902011	rs9910549	C	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	61902142	rs9912451	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	61902822	rs716880	C	G	8980.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,342:0.99:344
chr17	61903445	rs2584625	G	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	61904337	rs141581810	TCCACTTCCAGTTTC	T	2626.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	61904465	rs28362566	C	CG	650.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	61904724	rs2665834	T	C	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	61904728	rs2727287	G	A	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	61905380	rs138713078	CA	C	2614.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	61906846	rs2665833	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	61908055	rs55833669	CT	C	926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.707;QD=12.36;ReadPosRankSum=0.169;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,63:0.84:75
chr17	61908271	rs968719	C	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	61908316	rs7220892	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	61912261	rs2665832	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	61949461	rs9674635	C	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	61958669	rs2006123	G	T	13329.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.63;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr17	61972811	rs71377720	T	C	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	61986027	rs2854152	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	61987405	rs2006122	A	T	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	61996130	rs2001345	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.86;QD=43.59;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	61996140	rs6173	A	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.07;QD=37.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	61996204	rs6171	T	C	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.57;QD=25.52;SOR=1.956;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	61996255	rs2005172	A	C	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=25.18;SOR=1.620;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	62006497	rs1051684	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	62007498	rs2070776	A	G	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,354:1.00:355
chr17	62018109	rs2228995	T	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	62018164	rs2227906	A	C	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	62018239	rs2227907	G	A	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	62018737	rs59081944	G	A	9814.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr17	62018773	rs2070720	T	C	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr17	62020348	rs2058194	T	C	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	62020572	.	CAG	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=4.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.216;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr17	62022208	rs9899194	C	T	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr17	62022659	rs58028318	A	AG	1871.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	62041068	rs6504191	T	C	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	62045293	.	CA	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.749;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr17	62045555	rs7218917	G	A	11245.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	62048467	rs2302236	A	G	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	62049235	rs9892013	A	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	62075994	rs76735942	G	GA	5355.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	62080113	rs4886	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	62080969	rs4141180	A	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	62082848	rs9890839	T	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	62083929	rs6504194	A	G	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	62122145	rs196915	A	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	62122677	rs196917	G	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	62123022	rs196918	C	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	62125272	rs196923	A	G	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	62126506	rs16947393	C	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	62130389	rs10689374	G	GCCT	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	62130551	rs9890717	A	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	62130937	rs196929	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	62131814	rs58103512	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	62132309	rs196931	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	62141455	rs187826	A	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	62152611	.	TA	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=1.683;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr17	62156933	rs196947	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	62232073	rs4968693	A	T	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	62254983	rs1967130	G	A	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	62265838	rs36104018	TC	T	3551.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	62270785	rs2166290	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	62385609	rs113369705	A	AAAACAAAC	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.37;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	62386078	rs28670385	T	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	62401118	rs2812	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	62406971	rs2070783	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	62461735	rs8067243	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	62463825	rs199721035	T	TG	1328.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.91;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	62476375	rs9908620	A	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	62476638	rs7225672	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	62479028	rs70937066	T	TA	2035.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	62481801	rs7223078	A	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	62492413	rs3744409	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	62492582	rs1427463	C	T	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr17	62499701	rs9896462	G	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	62500753	rs2075552	C	T	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	62501006	rs6504237	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	62501856	rs16947825	C	G	10354.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	62501928	rs2075551	C	G	14515.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,566:1.00:567
chr17	62501967	rs2075550	A	G	11791.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:3,455:0.99:458
chr17	62503131	rs3744407	T	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	62528251	rs71831837	G	GT,GTT	694.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.735;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.423;QD=17.81;ReadPosRankSum=1.992;SOR=2.368;set=HC	GT:AD:AF:DP	1/2:4,23,12:0.59,0.31:39
chr17	62541852	rs2872314	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.913;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.136;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr17	62541858	.	G	C	1641.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.04;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	62574803	rs112909827	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	62587143	rs8068867	T	C	1855.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=-0.706;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr17	62658004	.	CGGCGGCGGG	C	821.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	62750365	rs9916496	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	62750390	rs9890154	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	62754586	rs9908143	T	C	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	62754672	rs9907075	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	62758984	rs11374577	G	GC	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	62777643	rs114331438	T	G	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	62782689	rs6504255	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	62788424	.	A	G	214.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.82;QD=26.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	62793372	.	C	T	127.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.48;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	62796196	rs140145794	C	T	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	62796759	.	A	C	2475.77	.	AC=2;AF=1.00;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	62801318	.	T	C	491.77	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	62811364	.	A	C	1305.77	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	62816604	rs9911118	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	62820746	rs9915020	G	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr17	62924044	rs6504263	G	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	62952689	rs3960389	C	G	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=26.45;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	63052361	rs7216195	C	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	63133804	rs2585858	A	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	63154324	rs12452228	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	63156467	rs16960740	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	63173756	rs9896245	A	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	63197920	rs2292593	T	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	63204209	rs2292592	A	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	63221704	rs73994767	T	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	63223326	rs8078885	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	63533789	rs9915936	T	C	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr17	63534250	rs8078753	T	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	64023624	rs17704679	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	64024255	.	AA	TA	34	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.9999,0.9999;HP=2;HapScore=4;MGOF=6;MMLQ=27;MQ=70.0;NF=2,2;NR=0,0;PP=34,24;QD=48.9228802356;SC=CTACATCTCAAAGCATCAATC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2,2;WE=64024263;WS=64024254;set=Platypus	GT:AD:AF:DP	0/1:0,2:1.00:2
chr17	64024255	.	AA	ATA	34	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.9999,0.9999;HP=2;HapScore=4;MGOF=6;MMLQ=27;MQ=70.0;NF=2,2;NR=0,0;PP=34,24;QD=48.9228802356;SC=CTACATCTCAAAGCATCAATC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2,2;WE=64024263;WS=64024254;set=Platypus	GT:AD:AF:DP	0/1:0,2:1.00:2
chr17	64024303	rs4277386	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	64024340	rs9901053	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	64024375	rs9899985	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	64025068	rs11651749	C	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	64025093	rs11651820	G	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	64025331	rs11652766	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	64025926	rs9908964	G	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	64049733	rs1401049	A	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	64062830	rs908713	T	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	64066163	rs56728223	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	64128760	rs229854	A	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	64208230	rs6933	G	A	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	64208396	rs1558359	G	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	64210456	rs8178940	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	64210757	rs4581	C	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	64216644	rs3744317	G	A	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	64735035	rs5821506	C	CT	3678.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:4,152:0.97:156
chr17	64783081	rs6504459	G	A	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	64784939	rs73994621	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	64785022	rs2228945	G	A	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	64785191	rs11420909	T	TG	1229.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	64785203	rs9898776	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	64875035	rs2286676	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	64881037	rs62621240	C	T	16002.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr17	64881075	rs2286678	A	G	9988.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	64961276	rs55909537	C	CCACA	321.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.126;QD=32.18;ReadPosRankSum=0.253;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr17	65020922	.	G	A	7643.77	.	AC=2;AF=1.00;AN=2;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	65026515	rs2240648	A	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	65027626	rs58736569	C	G	13550.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr17	65051104	rs11322532	CA	C	1781.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	65051180	rs2363844	A	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	65074354	rs35467630	G	GA	520.06	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:5,31:0.86:36
chr17	65104666	rs11657929	T	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	65104743	rs11653020	G	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	65116491	rs12709454	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	65119931	rs148790310	C	CTGTGTG	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.298;QD=29.60;ReadPosRankSum=1.187;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr17	65119962	.	T	TGTGTGTGC	456	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=27;MQ=58.64;NF=3;NR=5;PP=456;QD=57.375;SC=TGTGTGTGTGTCAGAGAGAAA;SbPval=0.3;Source=Platypus;TC=17;TCF=4;TCR=13;TR=8;WE=65119970;WS=65119952;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr17	65142070	rs34812114	G	GA	867.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:4,46:0.92:50
chr17	65145874	rs3213754	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	65156919	rs1035176	G	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	65157277	rs2287127	A	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	65211876	rs10512514	A	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	65528801	rs2304278	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	65548518	rs146525851	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr17	65548540	rs2916133	G	T	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	65549847	rs2570046	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	65683398	rs2625565	T	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	65714359	rs3760226	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	65717461	rs141717993	G	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	65718798	.	TA	T	44	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.5948;HP=12;HapScore=3;MGOF=14;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=44;QD=12.5;SC=GAAATTTCTTTAAAAAAAAAA;SbPval=0.58;Source=Platypus;TC=5;TCF=1;TCR=4;TR=4;WE=65718807;WS=65718788;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr17	65718839	rs999043	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	65722690	rs116640209	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	65722812	rs114599593	C	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	65722849	rs3744268	G	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	65730404	rs4790943	G	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	65732262	rs80169867	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	65732959	rs7223990	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	65734514	rs1542610	A	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	65737016	rs34886243	CT	C	216.86	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr17	65821481	rs12945266	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	65822320	rs73351760	C	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	65882457	rs8072824	T	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65889701	rs7214985	G	A	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.47;QD=26.67;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	65890244	rs143731190	A	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	65906925	rs200868858	AAT	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.671;QD=17.73;ReadPosRankSum=-0.108;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr17	65920941	rs149035359	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	65955651	rs8068790	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	65955758	rs139709271	T	TCCTCCAGCC	3959.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:5,153:0.97:158
chr17	65955774	.	G	GCCCCTCCAA	2985	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=4;HapScore=1;MGOF=55;MMLQ=28;MQ=61.54;NF=10;NR=49;PP=2985;QD=20;SC=AGCCCCTCCAGCCCCTCCACC;SbPval=0.5;Source=Platypus;TC=73;TCF=12;TCR=61;TR=59;WE=65955782;WS=65955764;set=Platypus	GT:AD:AF:DP	1/1:14,59:0.81:73
chr17	65972188	rs61489754	TA	T	198.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.28;QD=18.07;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	65989048	rs28368756	T	C	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	66036934	rs75756883	A	AT	2544.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.090;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-1.539;SOR=0.441;set=HC	GT:AD:AF:DP	1/1:8,126:0.94:134
chr17	66036969	rs201365288	C	CAGAT	4480.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.209;QD=42.67;ReadPosRankSum=0.868;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:2,103:0.98:105
chr17	66038597	rs113615404	A	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	66040175	rs1136739	T	C	6497.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	66121807	rs1964244	C	T	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=24.99;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	66122027	rs374673808	TA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.416;QD=2.67;ReadPosRankSum=-0.313;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr17	66124489	rs2240606	G	A	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	66246416	rs3213690	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	66247426	rs58359332	A	ACTGTATAG	996.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	66252886	rs139896934	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	66253019	rs113287202	A	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;MQ=59.84;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	66265148	rs148251357	G	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	66340000	rs141203586	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	66343094	rs148639419	G	A	8399.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	66347899	rs76945033	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	66364749	rs1558877	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	66420766	rs3785605	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=26.38;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	66422390	rs1006226	C	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	66423272	rs57572180	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	66424923	rs1002446	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	66425995	rs3785610	T	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=44.95;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	66425995	.	TCC	GCT	1546	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=27;MQ=59.5;NF=26;NR=14;PP=1546;QD=39.9866968716;SC=CTCCCAAGGTTCCGGGATTAC;SbPval=0.54;Source=Platypus;TC=40;TCF=26;TCR=14;TR=40;WE=66426005;WS=66425985;set=Platypus	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	66425997	rs3785611	C	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=44.21;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	66430801	rs114881704	A	G	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	66446803	rs2302782	T	C	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	66447073	rs2302783	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	66449122	rs883541	G	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	66453305	rs71378928	C	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	66453320	rs67556103	A	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.11;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	66453410	rs71378929	C	T	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	66453572	rs146213184	GGCCCGGGAA	G	3414.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	66547829	.	A	AATT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.82;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr17	66871570	.	G	GA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.558;QD=1.88;ReadPosRankSum=-2.074;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr17	66872802	rs1481	G	C	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	66873743	rs8068987	G	A	10458.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,408:1.00:410
chr17	66880081	rs8080098	A	G	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	66880371	rs1470293	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	66883719	rs6501839	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	66890117	rs4148000	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	66928545	rs16973450	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	66938232	rs4147958	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	66985397	.	T	TCTCACA,TCACA	318.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	1/1:1.00:10
chr17	66986162	rs9902444	A	C	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	66987202	rs2302293	A	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67017819	rs146273534	G	GTCCT	659.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=0.710;QD=32.96;ReadPosRankSum=-0.063;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr17	67020526	rs7221250	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	67023385	rs16973521	C	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	67023755	rs6501947	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	67024585	rs12940103	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	67024799	rs8066758	T	A	2358.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	67031369	rs1860448	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr17	67075294	rs2302289	C	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	67080770	rs11657954	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	67080811	rs71144653	CT	C	138.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	67081732	rs2302133	C	T	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.98;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	67081830	rs2302134	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	67099129	rs2364315	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67101718	rs7212506	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67109662	rs11659091	G	A	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	67109673	rs7504026	A	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67109894	rs9282552	C	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	67119593	rs4603621	G	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	67125840	rs4968839	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	67131029	rs58333377	C	CTTTTTTTTTTT	305.76	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=38.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67132022	rs7219200	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	67150176	rs2886232	T	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	67150561	.	CTTTT	C	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.72;ReadPosRankSum=1.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr17	67152893	rs10605889	CAAAT	C	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67160186	rs7208382	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	67170736	rs740520	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	67171748	rs12940557	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	67178316	rs4968849	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	67178954	rs4968851	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	67178976	rs200637080	GAA	G,GA	221.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	0/1:0.50:16
chr17	67181540	rs11658738	C	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	67181548	rs11655199	T	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	67188576	rs8070232	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67188668	rs8074259	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	67193150	.	A	AGGGAGGGGGAGG	320.75	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;QD=40.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67211058	rs9909045	T	A	126.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67212031	rs11077414	A	G	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	67212423	rs9909216	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	67212574	rs9912127	A	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	67215712	rs12941264	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	67215993	rs77873035	T	A	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67219703	rs11655507	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	67219768	rs1468512	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	67245941	rs1420904	G	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67249922	rs9909726	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	67264251	rs145417915	AGATATATCTTAG	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	67267317	rs557491	T	C	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	67280310	rs564426	A	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	67290840	rs17686569	T	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	67293535	rs487382	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	67304447	rs11544715	C	T	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	67502138	rs2074027	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	67532388	rs3815035	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	68128587	rs146289278	G	A	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	69334553	rs4401085	G	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.50;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	69334971	.	TATTTC	T	892.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.75;QD=35.71;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	69334972	.	A	C	265	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=7;HapScore=2;MGOF=2;MMLQ=28;MQ=60.61;NF=5;NR=9;PP=265;QD=21.4122294677;SC=TGTTTCTTTTATTTCCTTTCT;SbPval=0.58;Source=Platypus;TC=14;TCF=5;TCR=9;TR=14;WE=69335015;WS=69334962;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	69334981	.	CTTTCTTTCTTCCTTCCTTTCTTTCTTT	C	890.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.37;QD=37.11;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	70643910	rs61342866	A	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	70645103	rs182005927	A	C	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr17	71027543	rs9912666	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	71189155	.	A	AGG	976	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=7;HapScore=1;MGOF=78;MMLQ=24;MQ=59.92;NF=10;NR=13;PP=976;QD=43.5652173913;SC=AAGATGGCGGAGGGGGCGGGA;SbPval=0.72;Source=Platypus;TC=27;TCF=13;TCR=14;TR=23;WE=71189163;WS=71189145;set=Platypus	GT:AD:AF:DP	1/1:4,23:0.85:27
chr17	71189182	rs3764359	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	71192468	rs1052705	C	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	71192663	rs1052706	G	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	71192873	rs11544800	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	71192955	rs1010442	C	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	71193594	rs7221701	G	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	71195949	rs1009110	C	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	71196809	rs1026128	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	71196995	rs1026129	G	A	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	71197200	rs1026130	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	71197748	rs1037256	G	A	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	71201675	rs3829571	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	71203231	rs57965299	CAAAAA	C	561.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	71205854	rs8387	A	G	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	71208647	rs10717516	GC	G	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	71223424	rs71154980	GA	G	212.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr17	71223501	rs17184168	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	71231604	rs3751925	A	C	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	71232687	rs745143	T	C	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	71232804	rs904384	C	A	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	71232807	rs904383	T	C	11245.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.45;ReadPosRankSum=1.585;SOR=0.376;set=HC	GT:AD:AF:DP	1/1:1,252:1.00:253
chr17	71232881	rs745142	G	C	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	71233130	rs11869253	A	G	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	71238433	rs1566286	G	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	71238525	rs1566287	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	71238649	rs5821951	T	TC	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	71238693	rs1566288	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	71239000	rs2270726	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	71239016	rs2270727	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	71244630	rs8915	C	T	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	71344896	rs146350585	T	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	71348854	rs146331595	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	71358045	rs11657033	T	C	1725.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.995;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.54;ReadPosRankSum=-1.493;SOR=0.342;set=HC	GT:AD:AF:DP	1/1:4,80:0.95:84
chr17	71365150	rs56761775	C	CA	169.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.578;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr17	71365314	rs867998	A	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	71375175	rs73345936	A	G	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	71375824	rs9914611	T	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	71382747	rs7212508	T	C	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	71386577	rs61752521	G	T	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	71390200	rs73345964	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	71390338	rs73345967	C	T	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	71397375	rs7226251	T	G	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	71398170	rs9302962	G	C	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	71415245	rs8071352	G	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	71415538	rs16977634	C	A	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	71418605	rs9894213	T	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	71420035	rs6501636	T	C	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	71443696	rs7224502	C	T	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	71443924	rs7209875	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	71503636	rs9895895	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	71746479	rs2683163	C	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	71746508	rs2683162	T	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	71746560	rs4416068	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	71824671	.	CT	C	166.75	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr17	72206117	rs58720199	CT	C	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.076;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr17	72209858	rs7206926	A	G	10168.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.002;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=1.106;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,396:1.00:397
chr17	72226945	rs877583	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	72233419	rs74718342	C	T	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	72233559	rs62621376	G	A	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	72240177	rs35999669	T	G	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	72240336	rs73356650	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	72245613	rs1870991	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr17	72245629	rs1870993	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	72245953	rs1112216	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr17	72245986	rs36208397	CCACTGTGGGGCTCCTGGGAGACGGAGCCT	C	5089.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.65;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	72246101	rs3897753	T	C	14360.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=26.02;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr17	72246382	rs139483749	TCTCG	T	10299.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.40;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	72246466	rs7224615	C	T	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.66;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	72248363	rs4789639	C	T	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	72248483	rs4789640	A	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	72248524	rs4789641	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	72248593	rs4789642	C	T	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	72249229	rs9899862	C	A	9793.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:1,380:1.00:381
chr17	72250110	rs8069056	G	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	72250149	rs8074722	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	72256155	rs7225498	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	72256196	rs34344898	TC	T	3364.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	72277879	rs3803792	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr17	72281367	rs6501706	A	G	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	72305753	rs2290957	C	T	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	72305793	rs12051676	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	72306116	rs66769719	CCT	C	8899.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	72308319	rs1979370	G	A	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	72308403	rs4239008	G	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	72308410	rs4239009	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	72308447	rs1979371	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	72310476	rs2054400	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	72321928	rs7207519	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	72322881	rs8082699	G	A	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	72332849	rs1111596	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	72337088	rs113482479	T	TG	4469.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	72338164	rs11285065	TC	T	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	72358170	rs111792213	G	A	10043.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	72366695	rs2382647	C	A	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr17	72367896	rs111722967	G	A	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	72368550	rs11658891	T	C	9836.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	72439700	rs9893663	T	G	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	72444893	rs74978552	A	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	72469958	rs1127737	A	G	11699.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.83;QD=44.66;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	72469966	rs2272111	G	A	11996.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.10;QD=43.47;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	72473553	rs7209406	T	C	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	72477385	rs1879967	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	72478030	rs55682471	CT	C	2156.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	72480288	rs73352401	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	72519798	rs1472726	C	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=23.13;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	72527718	rs965229	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	72537894	rs2140253	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	72541838	rs809740	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	72541980	rs783230	A	G	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	72575977	rs7219289	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	72584764	rs783239	C	T	8983.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	72588326	rs493430	A	C	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	72588806	rs545652	C	A	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	72610143	rs147982605	G	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	72610164	rs56380796	T	C	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	72610315	rs143378566	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	72613589	rs581157	T	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	72691263	rs34303409	G	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr17	72691885	rs59859657	C	T	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr17	72691928	rs2034310	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	72700943	rs35489971	A	G	11720.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	72709195	rs67406906	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	72709210	rs71380839	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	72736755	rs11651291	A	G	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	72773794	rs9910691	C	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr17	72781812	rs2166703	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	72784932	rs2016126	G	A	12629.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr17	72786157	rs112618654	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	72786912	rs4494584	A	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	72791086	.	G	GA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.602;QD=1.28;ReadPosRankSum=0.858;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:106,31:0.23:137
chr17	72791618	rs7221435	A	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr17	72791725	rs139380725	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	72838481	rs939536	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	72839130	rs139495021	A	AGCTCCGGGG	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	72839647	rs139011774	G	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	72848758	rs75018418	C	CG	5416.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	72848772	rs199662980	G	GC	5066.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	72848778	rs201209302	C	CG	4495.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	72851133	rs689730	A	G	4188.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.616;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=6.074;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.14;ReadPosRankSum=-0.365;SOR=0.066;set=HC	GT:AD:AF:DP	1/1:3,178:0.98:181
chr17	72858999	rs140429107	C	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	72859078	rs690371	A	G	14605.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=1.605;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,560:1.00:561
chr17	72860253	rs552432	A	G	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	72860653	rs34038065	G	A	6987.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	72861145	rs1996710	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	72861829	rs35893883	C	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	72862879	rs34207358	C	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	72864747	rs114592509	G	A	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr17	72866228	rs34615400	G	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	72868128	rs3833107	AG	A	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	72868492	rs34037885	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	72869106	rs35832918	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	72869183	rs35326669	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	72874671	rs73997539	A	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	72888836	rs489152	G	A	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	72889676	.	G	GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC	12482.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=5.058;MLEAC=2;MLEAF=1.000;MQ=59.15;MQRankSum=-0.575;QD=46.40;ReadPosRankSum=0.971;SOR=3.223;set=HC	GT:AD:AF:DP	1/1:2,267:0.99:269
chr17	72927123	rs6501741	G	T	22840.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,867:1.00:867
chr17	72929380	rs2035835	G	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	72948369	rs17853024	A	G	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	72951823	rs9899490	C	T	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	72951845	rs9903414	G	A	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	72952017	rs9906160	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	72956124	rs3744198	G	A	10752.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	72959000	rs7503218	G	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	72959176	rs60549366	G	C	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	72960050	rs9899935	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	72983888	rs7222918	A	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	72997364	rs58998428	T	TAGG	1679.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.312;QD=25.07;ReadPosRankSum=-1.032;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:2,65:0.97:67
chr17	73000061	rs3744203	A	G	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	73000204	rs35384667	A	G	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	73008804	rs3744206	G	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	73038746	rs9660	T	C	668.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.06;ReadPosRankSum=-0.363;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr17	73048920	rs114077345	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73049228	rs60660596	G	A	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	73096951	rs4238978	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	73110144	rs1531565	G	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73110279	rs1531564	C	T	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	73126746	rs10715821	GT	G	10762.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	73127024	rs9910084	C	G	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	73132058	.	G	GA	236.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-1.289;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr17	73138711	rs372163854	AGGAGGGGAG	A	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=36.23;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	73138751	rs111454348	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=24.10;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	73177444	rs1471453	C	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	73208182	.	CGTGT	C,CGT	6413.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=168;set=Intersection	GT:AF:DP	1/2:0.12,0.87:134
chr17	73208186	rs377216149	T	C	3786.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.525;QD=28.26;ReadPosRankSum=2.655;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:17,117:0.87:134
chr17	73208186	.	TGT	CGC	1687	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=24;MQ=59.79;NF=24;NR=38;PP=1687;QD=28.0720624978;SC=TGCGCGCGTGTGTGTGTGTGT;SbPval=0.68;Source=Platypus;TC=87;TCF=37;TCR=50;TR=62;WE=73208196;WS=73208166;set=Platypus	GT:AD:AF:DP	1/1:25,62:0.71:87
chr17	73208188	.	T	C	6825.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=3.634;MLEAC=2;MLEAF=1.000;MQ=59.75;MQRankSum=-0.057;QD=43.48;ReadPosRankSum=1.512;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:1,156:0.99:157
chr17	73211902	rs146733557	T	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	73222847	rs1551967	C	T	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	73227760	rs146201831	TATGCGGGTGCTCTTCAGC	T	2711.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73228101	rs899318	T	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	73230796	rs35857535	T	C	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	73230856	rs9988	C	T	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	73230936	rs3214915	TTA	T	5329.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr17	73230963	rs2291032	G	A	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	73231148	rs73356305	C	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73231817	rs3841603	AT	A	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	73235728	rs9902741	C	T	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	73236124	rs28641831	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	73236305	rs16967691	C	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73236605	rs11077781	C	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	73240559	rs2306216	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	73240836	rs4789156	T	C	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	73257813	rs16967742	G	T	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	73257830	rs2279161	C	T	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	73258085	rs36039201	GGC	G	3345.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	73258479	rs6501772	C	T	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:2,372:0.99:374
chr17	73262615	rs16967764	G	A	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	73263012	rs61739324	C	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	73264082	rs73356374	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	73265607	rs73356377	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	73265629	.	CTTTT	C	300.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.34;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:4,7:0.64:11
chr17	73266180	rs3744232	G	C	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr17	73269530	rs1809352	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	73274181	rs2306217	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	73274500	rs3214917	T	TA	1916.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73279700	rs4788882	C	T	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	73328773	rs1529844	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	73402246	rs7220246	C	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	73482110	rs11331365	TC	T	1609.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	73482664	rs9899149	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	73484694	rs56323400	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73484753	rs11652993	C	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	73485033	rs11867527	T	C	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	73488794	rs4078259	C	T	14443.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr17	73489220	rs7215753	T	C	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	73490036	rs55768663	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.03;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	73490611	rs8078131	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	73491894	rs11077792	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	73494963	rs9894026	G	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	73497415	rs8081353	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.59;SOR=1.917;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	73497415	.	TTT	CTC	2558	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=27;MQ=60.0;NF=42;NR=15;PP=2558;QD=20;SC=ATCTAGGTGATTTCAACACCT;SbPval=0.53;Source=Platypus;TC=61;TCF=45;TCR=16;TR=57;WE=73497425;WS=73497405;set=Platypus	GT:AD:AF:DP	1/1:4,57:0.93:61
chr17	73497417	rs8081354	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	73497439	rs8075850	G	A	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	73497794	rs9892311	T	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	73498483	rs7503373	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	73499697	rs7207376	T	C	7992.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	73502118	rs28558885	G	A	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	73504416	rs6501815	T	C	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	73510012	rs4789206	A	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	73512643	.	T	TGGAGCC	635.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	73513677	rs11559205	A	C	11825.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,454:1.00:455
chr17	73514944	rs62088466	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	73515237	rs55786842	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	73518284	rs6501820	G	C	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	73519137	rs62088468	A	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	73519589	rs62088469	T	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	73539631	rs6501822	A	G	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	73554523	rs1671033	C	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	73559342	rs936060	G	A	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	73559563	rs1671028	G	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	73559629	rs1671027	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	73564962	rs34001927	A	G	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	73565171	rs1671021	T	C	10735.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	73565262	rs2305526	T	A	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	73565510	rs936059	T	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73567846	rs1661715	C	T	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	73568055	rs1661714	C	T	13506.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr17	73568984	rs1671020	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73569010	rs1661713	T	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	73569776	rs10648915	C	CCT	2185.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	73569927	rs1671019	G	T	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	73570718	rs1126939	C	G	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	73570756	rs1661712	G	T	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	73571030	rs1042861	A	G	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	73587640	rs707709	T	C	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	73587910	rs12449676	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73590436	rs820254	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	73590830	rs820256	T	G	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	73601517	rs11448916	T	TA	407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.154;QD=12.36;ReadPosRankSum=0.874;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:5,28:0.85:33
chr17	73601755	rs936054	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	73608744	rs11336364	CA	C	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.791;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.603;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr17	73609139	rs3803728	C	T	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	73610203	rs4789221	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73612642	rs11439064	A	AT	13451.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	73620804	rs820187	C	A	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr17	73625173	rs34354281	A	G	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	73625478	rs820191	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr17	73625932	rs112797397	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	73626208	rs820193	G	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	73626817	rs820194	G	A	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	73626829	rs820195	C	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	73626922	rs56158987	G	GT	3152.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:11,119:0.92:130
chr17	73626924	rs113150921	G	T	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:12,122:0.91:134
chr17	73626966	rs111902955	C	T	8795.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	73626983	rs9896073	G	C	9460.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	73627440	rs60199317	C	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	73627565	rs820197	A	G	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	73629644	rs111344412	G	A	11503.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:6,443:0.99:449
chr17	73636250	.	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	73720638	rs820166	C	T	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	73720900	rs820167	A	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	73723453	rs34275940	GC	G	4732.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	73723749	rs146609350	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	73725239	rs71271523	CA	C	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=1.281;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:19,35:0.65:54
chr17	73725298	rs1661674	C	T	9601.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	73725301	rs34598265	C	T	9799.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	73725304	rs1661675	C	G	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	73726654	.	T	TCTCCCTCC	1739	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=3;HapScore=1;MGOF=20;MMLQ=23;MQ=59.58;NF=0;NR=27;PP=1739;QD=64.7037037037;SC=CTCAGACACCTCTCCCTCCCT;SbPval=1.0;Source=Platypus;TC=48;TCF=0;TCR=48;TR=27;WE=73726662;WS=73726644;set=Platypus	GT:AD:AF:DP	1/1:21,27:0.56:48
chr17	73726684	.	T	TCCC	756.82	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.52;MQRankSum=0.271;QD=36.04;ReadPosRankSum=1.570;SOR=4.712;set=HC	GT:AD:AF:DP	0/1:1,20:0.95:21
chr17	73726685	.	T	TCCCTC	756.82	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.05;MQRankSum=0.271;QD=36.04;ReadPosRankSum=1.735;SOR=4.712;set=HC	GT:AD:AF:DP	0/1:1,20:0.95:21
chr17	73729649	rs148312483	G	A	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	73732025	rs820174	C	T	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	73732045	rs820175	T	C	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	73732522	rs820176	T	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	73732810	rs820177	A	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	73733315	rs820179	G	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	73746146	rs820387	T	C	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	73753661	rs9367	C	T	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	73754248	rs743554	G	A	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	73759038	rs35008831	TC	T	5809.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	73759304	rs820386	G	T	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	73774877	rs9895763	G	A	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	73781075	rs11335367	GC	G	95.87	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	73805823	rs76388976	G	A	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	73812909	rs9908146	A	G	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	73816026	rs11868471	A	G	12736.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	73819525	rs8078208	C	T	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	73824067	rs61753922	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	73824121	rs7210574	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	73826400	rs114246714	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	73826611	rs2290768	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	73827205	rs1135688	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	73827436	rs3217698	C	CG	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	73830270	rs7212635	G	A	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr17	73831633	rs116106644	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	73831658	rs3744024	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	73831900	rs3744026	T	C	10670.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	73833087	rs142821095	C	CCCTCCTCCAGGGCCCCTGGTGGAGAA	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	73836162	rs7223416	C	G	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	73836441	rs7226310	G	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	73837142	rs8067076	A	C	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr17	73838816	rs3744006	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73839498	rs9903200	G	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	73840272	rs3744011	C	T	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	73842892	rs2305914	C	T	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	73844748	rs2290771	A	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	73851241	rs3988221	C	CCCCACCA	6379.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	73871911	rs3744021	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73872948	rs1055129	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	73872969	rs3833085	A	AG	740.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	73874012	rs3903010	T	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.71;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	73874071	rs4600514	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr17	73874138	rs4072479	G	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73886888	rs3760128	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	73887318	rs9892938	C	T	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr17	73887996	rs4393627	A	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	73888343	rs9914840	C	T	9976.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	73888423	rs7222755	A	G	15588.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	73888427	rs7222757	A	C	15596.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	73888743	rs3744027	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	73888806	rs9916659	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	73892600	rs55861951	G	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73892750	.	T	TCGGGGC	2495.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=43.78;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	73897033	rs111405920	A	AC	18165.73	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:4,573:0.99:577
chr17	73897046	rs9902371	A	G	26614.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr17	73900688	rs3744015	T	C	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	73906934	rs9302994	G	A	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	73908475	rs8065151	C	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73908566	rs9895947	A	C	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	73913729	rs4788912	C	G	154.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	73913965	rs11288315	TC	T	1934.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73916423	rs7213548	A	T	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	73917426	rs3744014	A	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	73918264	rs11870961	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	73919521	rs7219918	C	T	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	73919538	rs7218738	G	A	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	73922941	rs2305913	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	73926231	rs72865811	G	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	73931847	rs7218498	C	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	73942976	rs2666003	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73944569	rs12051891	A	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	73953404	rs11077798	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	73982505	rs58190545	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	73987652	rs10852767	C	T	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	73997474	rs2069528	G	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	74003805	rs7342882	G	A	10220.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr17	74003846	rs7342883	G	A	9005.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr17	74005476	rs7225323	G	A	10706.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	74011721	rs2665970	C	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr17	74014228	rs8071298	G	A	10103.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	74014468	rs2071194	C	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	74014628	rs2071193	G	A	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	74014668	rs2071192	T	C	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	74015590	rs2244371	C	T	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	74015595	rs2244370	T	C	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	74017682	.	C	CCT	6568.73	.	AC=2;AF=1.00;AN=2;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=44.38;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	74017700	rs71161251	T	TC	5826.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=30.99;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	74018640	rs1806914	C	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	74018655	rs2598417	C	T	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	74019572	rs2257388	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	74035543	rs7409	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	74036912	rs2598444	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	74037208	rs2598445	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	74039867	rs1530834	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	74046672	rs2665972	A	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	74056413	rs2665998	C	T	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	74063291	rs74767531	T	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	74063523	rs4789241	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	74066447	rs2443168	T	A	8043.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	74077797	rs1043149	C	T	19009.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr17	74080443	rs2305347	C	T	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	74152366	rs881502	A	G	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	74236115	rs8070711	G	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	74261677	rs2585751	T	C	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	74261929	rs71382201	A	G	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	74266322	rs712833	T	C	20192.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,800:1.00:800
chr17	74273299	rs73350377	G	A	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	74275030	rs182972	T	C	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	74276315	rs73350386	G	A	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	74283214	rs346786	C	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	74283253	rs8072620	A	G	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	74283769	rs346785	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	74286082	rs4789273	C	T	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	74286106	rs4789274	C	T	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	74286173	rs17509527	A	G	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	74287204	rs2279052	C	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	74287389	rs2279053	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	74287594	rs2279054	G	A	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr17	74288564	rs35035566	CTGA	C	12853.73	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:4,485:0.99:489
chr17	74289242	rs3803736	T	C	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	74289500	rs3803737	G	A	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	74289705	rs6501880	A	G	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr17	74289839	rs6501881	G	A	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	74289875	rs6501882	C	T	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	74289908	rs6501883	A	G	7516.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	74290097	rs7225131	T	A	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	74300497	rs73996306	G	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	74300916	rs8068457	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	74301070	rs8068763	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr17	74303379	rs73996309	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=34.68;ReadPosRankSum=-0.253;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr17	74307737	rs10459	T	C	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	74308891	rs61440609	T	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	74310084	rs56194157	A	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.44;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	74324729	rs346791	C	A	1488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-1.265;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr17	74326553	rs449114	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	74326556	rs399029	A	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	74328576	rs382008	C	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	74381567	rs346803	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	74381797	rs75167000	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	74401405	rs11290311	AG	A	5056.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.689;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.173;QD=33.27;ReadPosRankSum=1.642;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr17	74401522	rs445683	C	T	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	74468552	rs12942767	A	G	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	74475024	rs3744045	G	A	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	74475975	rs3809694	C	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	74476045	rs3826287	G	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	74476089	rs138608987	ATGTGTGTGTG	A	110.74	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;QD=27.68;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	74477340	rs3826288	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	74524506	rs201303782	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	74536332	rs8176326	TC	T	675.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=13.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=1.207;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr17	74536333	rs77817682	C	G	657.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=14.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-1.650;SOR=1.756;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr17	74539092	rs4318240	C	T	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	74540665	rs73998961	G	A	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	74557072	rs111693607	G	GAA	270.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74557211	rs16969028	A	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	74557361	rs113071120	T	TCTTC	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	74557584	rs113357646	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	74557681	rs4510053	A	C	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	74557698	rs73369108	G	A	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	74557803	rs60161580	GT	G	3099.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.418;QD=19.50;ReadPosRankSum=-0.004;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:8,151:0.95:159
chr17	74557887	rs78580816	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	74562169	rs1053392	G	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	74563653	rs2241918	A	G	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	74568888	rs143529427	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	74570408	rs7207173	A	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	74570572	rs137991970	T	C	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	74581898	rs111567841	C	T	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	74581945	rs12449329	AA	GC	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	74582025	rs1867561	G	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	74621635	rs2286595	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	74639530	rs719430	T	C	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	74681435	rs2286593	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	74684598	rs4788942	C	T	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	74684858	rs7219390	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	74707050	rs71383084	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.04;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	74707086	rs372946783	CGTCGCCGCGCCCG	C	332.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.27;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	74721488	rs36106744	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.971;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr17	74728938	rs4789351	C	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74732507	rs237058	A	G	11878.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	74733099	rs237057	G	A	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr17	74734323	rs237054	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	74734598	rs237053	C	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	74736999	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-1.709;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr17	74750215	rs11399997	C	CT	6800.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.96;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	74750331	rs116719	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	74857515	rs499828	A	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	74899234	rs568277	T	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	74899320	rs567361	G	C	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	74900582	rs733369	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	74900585	rs535136	C	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	74921072	rs3889145	G	C	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	74944585	rs11870033	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	74944709	rs9894270	T	C	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr17	74944934	rs3803745	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	75085226	rs3214724	TC	T	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	75085260	rs2247814	C	G	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	75085329	rs16969660	G	T	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	75085434	rs2678770	G	A	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	75085654	rs16969661	A	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	75187403	rs73378315	T	C	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr17	75190846	rs673918	A	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr17	75207966	rs2280269	A	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	75277611	rs8070026	A	C	7925.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	75303298	rs4789439	T	C	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	75393267	rs434143	C	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	75398205	rs189537244	C	G	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	75401190	rs2164449	G	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	75401310	rs2117924	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	75478628	.	T	C	4327.77	.	AC=2;AF=1.00;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	75478809	rs149896636	C	CACCGCAGCCT	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.75;QD=44.15;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	75483528	rs3765043	C	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	75484156	rs441670	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	75484200	rs35261301	TC	T	1227.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	75484700	rs378578	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	75484781	rs370531	T	C	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	75485014	rs426885	A	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	75488973	rs2627198	C	T	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	75489015	rs188747	T	C	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	75489216	rs312797	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	75489244	rs167498	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	75489282	rs61127839	C	CA	383.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	75494705	rs2627223	A	G	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	75494787	rs5822173	T	TC	1834.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr17	75834770	rs9910282	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	76045269	rs7223750	G	A	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	76046726	rs77879497	A	G	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	76047561	.	TAAAA	T	389.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.128;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=-1.904;QD=19.49;ReadPosRankSum=-0.238;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:7,13:0.65:20
chr17	76047612	rs4411562	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	76060954	rs61730171	A	C	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	76075339	rs116484568	C	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	76079256	rs7208399	A	T	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	76094111	rs2290905	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	76131070	rs12452890	G	A	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	76134828	rs7221365	C	A	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	76137198	rs369764	T	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	76142402	rs2310998	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	76143009	rs7217374	G	A	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr17	76157266	rs4071641	T	C	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	76157348	rs12951279	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	76178748	rs1143697	T	C	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	76182766	.	A	AAGGGGAGGGG	1080.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.07;MQRankSum=0.912;QD=60.04;ReadPosRankSum=1.739;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	76183043	rs1071664	A	G	11265.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	76198754	rs35822441	T	C	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	76218857	rs4789559	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	76219591	rs2071214	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr17	76228088	rs8068943	T	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	76230455	rs193130660	A	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	76394042	rs16971107	G	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	76394449	rs2292644	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	76395421	rs2292643	G	A	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.07;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	76395430	rs2292642	C	T	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.60;SOR=2.854;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	76395750	rs12450500	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=3.306;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	76396963	rs3817294	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	76400236	rs3744219	G	A	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	76400258	rs3744217	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	76400268	rs3826323	C	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	76410871	rs3744216	G	A	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr17	76411154	rs3833108	T	TG	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	76422473	rs4969188	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	76423097	rs2271613	G	A	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	76424482	rs651806	A	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	76433685	rs2289757	A	G	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	76433898	rs12941494	T	C	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	76435448	rs12150123	C	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	76447617	rs34002770	A	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	76451921	rs8069561	A	G	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	76456352	rs623336	T	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	76457559	rs692529	T	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	76462949	rs116615136	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	76464916	rs635874	G	A	9197.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	76472768	rs7405830	G	A	3104.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=0.658;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:2,125:0.98:127
chr17	76475469	rs74357643	A	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	76476744	rs78743838	G	A	3804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.571;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=-1.015;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,152:0.99:153
chr17	76480848	rs12952246	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	76481608	rs11077370	A	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	76481613	rs74001378	G	A	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	76481693	rs11872051	C	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr17	76481997	rs12944880	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	76482256	rs691142	A	G	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	76487476	rs74889218	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	76488973	rs1983306	A	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	76490083	rs691912	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	76491127	rs691652	TG	CC	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	76495050	rs691291	C	T	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,217:1.00:218
chr17	76496350	rs35901117	A	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	76496361	rs34124297	C	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	76496492	rs2028734	A	G	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	76496577	rs2028735	C	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	76497778	rs671899	T	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	76497920	rs690844	C	A	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	76498692	rs930571	C	T	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	76502734	rs11077378	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	76503527	rs9894913	G	A	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	76503593	rs9896398	T	C	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	76503966	rs9902653	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	76506607	rs867654	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	76521076	rs56410782	G	A	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr17	76525592	rs61736293	C	T	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,287:1.00:288
chr17	76525851	.	GA	G	1968.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	76526641	rs192079141	G	C	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	76528585	rs61741264	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	76533259	.	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.551;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr17	76554114	rs62075923	A	G	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	76554147	rs4969171	A	G	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	76556811	rs78321431	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	76557862	rs894966	T	C	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	76558159	rs2376587	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	76565341	rs72920970	G	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	76566963	.	AAAAAGAAAAG	A	187.74	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=20.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	76567013	rs12948559	C	T	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	76567332	rs12949510	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	76567707	rs894968	T	C	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	76567783	rs61743539	C	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	76567910	rs4969149	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	76569056	rs12951733	G	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	76570757	rs73999136	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	76571269	rs9903478	A	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	76867185	rs55743137	G	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	76886678	rs115997189	C	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	76970879	rs3744166	A	G	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	77089515	rs4789891	G	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	77089630	rs371204042	GA	G	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.560;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.900;QD=2.01;ReadPosRankSum=1.367;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr17	77089873	rs112110060	C	CCACA	373.74	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=37.37;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	77097811	rs2612798	G	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	77102966	rs36122090	T	TC	1678.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=31.09;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	77111732	rs80198744	G	A	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	77704912	rs8074547	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	77705045	rs8074728	T	C	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.02;QD=25.38;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	77709339	rs11657217	C	G	7302.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	77709527	.	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.269;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr17	77751983	rs71368052	C	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	77755442	rs115837021	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	77758691	rs3751957	G	A	10982.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:3,426:0.99:429
chr17	77768654	rs4889891	C	A	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	77769928	.	GAAAGAAGA	G	1272.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr17	77772068	rs9905914	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	77772187	rs9906169	G	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	77809365	.	CA	C	42.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.609;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr17	77809366	.	A	C	740.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-0.018;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr17	77809591	.	GC	G	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.613;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:287,71:0.20:358
chr17	77914985	rs141373322	A	G	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr17	77919001	.	C	T	522.77	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	77921387	.	G	A	2326.77	.	AC=2;AF=1.00;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	77984141	rs35922784	C	T	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	78013724	rs2289527	G	C	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	78014024	rs2885349	G	A	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr17	78021037	rs7207441	A	G	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	78021061	rs7223400	G	C	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	78021214	rs7212525	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	78021260	rs7212643	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	78023614	rs7219552	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	78032677	rs61734950	C	T	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	78032919	rs75047487	C	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	78041266	rs11868400	T	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	78041365	rs11867810	A	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	78041467	rs35892854	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	78041471	rs75855179	GC	AT	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	78061317	rs11150839	A	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	78061353	rs11150840	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	78061979	rs12942049	A	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	78064216	.	CAGCACGTGCATGAACAACACAGGACACACACA	C	1861.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.87;QD=39.61;SOR=2.352;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	78071052	rs12952612	T	C	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	78073562	rs2304854	A	G	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	78078709	rs1800300	T	C	14200.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr17	78081278	rs74003611	C	T	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	78081982	rs2241888	G	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	78083726	rs2278619	A	G	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	78084867	rs2304842	G	T	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	78086846	rs2304836	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	78090928	rs2304832	G	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.742;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	78090932	rs2304831	T	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=2.761;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	78091405	rs1126690	G	A	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	78091513	rs1800314	G	A	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	78092381	rs4889821	G	C	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	78092585	rs1800315	C	T	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:3,211:0.99:214
chr17	78093133	rs1800317	G	A	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	78111178	rs61751628	G	C	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	78111449	rs2289535	A	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	78111877	rs2361710	T	C	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	78120791	.	CGCCGCTGCCGACCTCGCT	C	914.73	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	78157592	rs11656949	C	T	3077.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr17	78157995	rs4889990	G	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	78158063	rs4889991	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	78161928	rs114702862	C	T	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	78169233	rs142981600	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	78169374	rs61751630	C	T	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	78187954	rs6565647	A	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr17	78188755	.	A	G	965.77	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	78188963	rs4889839	G	A	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	78191030	rs9900502	C	T	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	78191036	rs9900509	C	T	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	78193831	rs4889841	T	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	78196742	rs5822330	T	TGTG	1966.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=43.71;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	78201554	rs6565652	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	78201783	rs6565653	T	G	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	78210944	rs8070283	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	78211215	rs28399176	T	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78215441	rs12943906	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	78219100	rs7406844	C	T	10739.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	78222064	rs11871932	T	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	78222280	rs7209848	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	78222565	rs7214131	A	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	78222661	rs9904116	C	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	78225055	rs8078855	G	T	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	78225299	rs8068779	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	78226332	rs58855338	T	C	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	78252770	rs7219131	T	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	78261805	rs7215243	A	G	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	78262161	rs17857135	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	78263429	rs62076476	C	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	78263486	rs17853989	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	78263514	rs17853713	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	78263634	rs141921176	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	78264298	rs11651637	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	78265667	rs7503557	T	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	78272294	rs72849841	C	T	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	78281088	rs61087724	G	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	78293189	rs55996424	A	T	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	78298938	rs6565674	A	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	78317144	rs116693616	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	78318507	rs78912458	T	C	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	78354661	rs4889848	C	T	11717.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	78354756	rs61747138	C	T	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	78360102	rs58364615	T	G	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	78397381	rs114008153	G	A	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	78401588	rs8065290	G	T	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	78404049	rs9889496	C	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	78444658	rs12943620	T	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	78599469	rs8077863	T	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78617439	rs6565469	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.66;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	78681590	rs2306690	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	78765219	rs4969429	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	78829069	rs73351957	C	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	78854056	rs6420478	A	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	78882806	rs1468029	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	78896488	rs2271602	C	T	25912.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.035;ClippingRankSum=0.000;DB;DP=1010;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=0.664;SOR=0.384;set=HC	GT:AD:AF:DP	1/1:1,991:1.00:992
chr17	78897561	rs6565491	C	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	78914245	rs17848659	G	T	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	78919349	rs8080910	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr17	78919387	rs17848707	G	A	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=25.43;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	78919558	rs1567962	C	T	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	78923126	rs35638552	T	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	78934088	rs77734083	G	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	78937925	rs3751938	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	78970779	rs12951796	G	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	78970909	rs4969334	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	78971176	rs9989475	A	G	10750.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	78971182	rs9989472	C	T	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	78971283	rs8081168	A	C	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	78972326	rs10871491	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	78972864	rs11870458	T	C	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr17	78978275	rs61048303	AA	GG	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	78978285	rs115579065	C	T	2109.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.37;ReadPosRankSum=1.984;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr17	78978654	rs7219221	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	79005225	rs57754289	A	ATCT	6560.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	79005292	rs55762738	G	A	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	79006850	rs11870986	T	C	11980.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr17	79007075	rs11150764	C	A	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	79009153	rs8073224	T	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	79010533	rs4969350	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	79010839	rs6565527	A	C	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	79031773	.	ACCCC	A	442.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;QD=34.06;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr17	79058476	rs115640568	C	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	79077957	rs34057293	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	79077980	rs57792378	A	C	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	79080554	rs115733273	A	G	14870.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,582:1.00:582
chr17	79085956	rs200155219	A	AC	993.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	79089428	rs12450670	A	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	79093142	rs144250320	C	CCGCGTGCCCTACCTCT	2498.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=56.79;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	79094290	rs61743713	C	T	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	79095085	rs61738824	G	A	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	79095144	rs8073904	G	A	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	79095629	rs7503604	C	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	79095707	rs61738829	G	A	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	79098519	rs116038548	G	A	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	79098838	rs141491493	GGCAGGGTGA	G	4812.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	79105850	rs4969253	T	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr17	79106306	.	T	C	675.77	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	79108141	rs4969397	A	G	13789.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:1,528:1.00:529
chr17	79108332	rs116639549	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.332;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	79155116	rs906180	A	G	16524.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr17	79163829	rs112158522	G	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	79165016	rs143205584	C	G	16155.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr17	79165182	rs115229120	G	A	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	79166103	rs870187	T	C	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	79168616	rs144742446	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr17	79170724	rs202200104	C	T	19270.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr17	79171967	rs2659016	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	79172258	rs192803962	G	A	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	79173184	rs2659015	T	C	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	79173224	rs2725419	T	C	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	79174221	rs2466773	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	79180369	rs55844247	C	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr17	79180775	rs2256881	A	G	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr17	79182667	rs9896314	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79204661	rs12937612	C	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	79205736	rs11655759	G	A	13481.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	79210707	rs2271089	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	79219566	rs57072484	C	G	10573.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr17	79220584	rs78200885	G	A	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr17	79255912	rs7213540	C	T	8819.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	79257138	rs76572820	G	A	21285.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr17	79258787	rs8077394	A	G	7180.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	79263397	rs75982513	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	79268562	rs8064597	A	G	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	79268733	rs115343321	T	C	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	79278357	rs11871509	C	G	11835.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	79279017	rs2056439	C	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	79287477	rs9916085	G	A	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	79288124	rs9891595	C	T	11192.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	79372952	rs146560663	T	TGC	2968.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:11,124:0.92:135
chr17	79373203	rs182760976	C	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr17	79380614	rs12450346	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	79385310	.	GCCTGCCTTCCTTCCTTCCTTCCTT	GCCTTCCTT,G	1309.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=109;set=Intersection	GT:AF:DP	1/1:1.00:30
chr17	79389251	rs9897258	C	T	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	79389486	rs11870740	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	79390260	rs151241907	G	GGT,GGTGT	2512.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=242;set=Intersection	GT:AF:DP	1/2:0.19,0.74:135
chr17	79390277	.	G	A	1638	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=87;MMLQ=25;MQ=59.05;NF=47;NR=14;PP=1638;QD=27.4224788942;SC=GTGTGTGTGTGTGTCCATGAG;SbPval=0.99;Source=Platypus;TC=174;TCF=99;TCR=75;TR=61;WE=79390287;WS=79390244;set=Platypus	GT:AD:AF:DP	1/0:113,61:0.35:174
chr17	79390298	.	T	TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC,TGC	13938.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=146;set=Intersection	GT:AF:DP	1/1:1.00:135
chr17	79390339	.	GTT	G	1811	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=4;HapScore=1;MGOF=79;MMLQ=24;MQ=59.29;NF=61;NR=106;PP=1811;QD=11.0538922156;SC=GTGTGTGCGTGTTTGTGTGTA;SbPval=0.53;Source=Platypus;TC=167;TCF=61;TCR=106;TR=167;WE=79390348;WS=79390313;set=Platypus	GT:AD:AF:DP	1/0:0,167:1.00:167
chr17	79390370	rs36169187	CGT	C	21451.73	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr17	79409309	rs12938890	A	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	79409434	rs12939225	A	G	5709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-1.294;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:2,226:0.99:228
chr17	79414307	rs7213444	A	G	18220.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:1,686:1.00:687
chr17	79414914	rs10871497	A	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	79418260	rs6565571	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	79418983	rs34593866	G	GC	14884.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.118;QD=27.72;ReadPosRankSum=2.727;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:5,532:0.99:537
chr17	79419158	rs374505812	C	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	79424516	rs12601317	A	G	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	79425609	rs11871605	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	79425640	rs11871611	C	T	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	79426481	rs4969273	A	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	79428601	rs61738790	C	T	20929.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=27.29;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,767:1.00:767
chr17	79430035	rs79478942	C	T	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	79478019	rs1139405	G	A	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	79478916	rs9910792	G	T	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	79479469	rs8064532	A	C	17977.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:1,686:1.00:687
chr17	79496295	rs34567655	T	C	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	79496811	rs60324496	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	79497255	rs78333089	G	C	3466.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.74;ReadPosRankSum=1.468;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,144:0.99:146
chr17	79497691	rs74002407	C	T	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	79502281	.	T	TCACCATCCCCATCAC	522.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.85;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	79502296	.	T	C	272	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=3;MGOF=12;MMLQ=27;MQ=50.12;NF=3;NR=11;PP=272;QD=21.9122294677;SC=ATCCCCATCATCACCATCCCC;SbPval=0.59;Source=Platypus;TC=14;TCF=3;TCR=11;TR=14;WE=79502322;WS=79502286;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	79503354	rs74002410	G	A	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79508400	rs14422	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	79508506	rs2228698	G	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	79513881	rs369579337	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=3.297;QD=0.84;ReadPosRankSum=2.140;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:57,22:0.28:79
chr17	79514028	rs74818865	C	G	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	79556210	rs75735577	A	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	79564304	rs62074671	G	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	79580173	rs6565601	C	T	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	79589052	rs75305572	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	79589242	rs6565604	G	A	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79596811	rs9894429	C	T	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	79603831	rs9895741	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	79604477	rs57463122	GTTTTT	G	7186.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,165:0.98:169
chr17	79604494	rs28660208	T	C	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.17;SOR=1.406;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	79609410	rs7406219	G	T	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	79609550	rs7406636	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	79612333	rs6565617	G	A	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	79612382	rs7210026	T	C	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	79612397	rs6420484	A	G	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	79612413	rs7210043	T	C	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	79612443	rs7210193	T	C	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	79614481	rs9906358	A	G	16051.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:2,634:1.00:636
chr17	79614932	rs34872037	TTAAC	T	10268.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	79615225	rs7406494	G	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	79615309	rs7406516	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	79618059	rs8477	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79618252	rs7217415	G	A	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	79618834	rs12603868	G	C	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	79632363	rs1128812	C	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	79633781	rs114120030	G	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	79637349	rs10438817	T	C	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	79637367	rs7226091	C	G	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	79637565	rs7215601	T	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	79637637	rs7209877	G	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	79638637	rs60041560	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	79639045	rs12940151	C	G	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	79639198	rs7502870	C	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	79639310	rs12938873	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	79639370	rs35384619	G	GA	377.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=1.178;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr17	79639550	rs11546630	G	A	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	79639708	rs11546631	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	79639724	rs148449642	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	79649304	rs3205137	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	79650181	rs34815730	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	79650675	rs8080624	C	G	11851.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	79650828	rs8066889	T	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.15;SOR=4.396;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	79655985	rs12450153	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	79668720	rs143087314	C	T	11817.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr17	79679358	.	C	CGGGCGCG	170.87	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	79679591	rs62077193	C	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	79682558	rs2072700	T	C	8927.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	79682943	rs56713834	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	79683698	rs62077217	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	79687218	rs11150813	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	79784101	rs374374934	GCA	G	884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.727;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:365,76:0.17:441
chr17	79827146	rs138551115	G	A	18612.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr17	79847032	rs147825902	C	G	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	79862882	rs146889521	C	G	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr17	79864852	.	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	79872129	rs1879568	A	G	12187.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	79872241	rs1879569	A	G	13697.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr17	79891147	rs61747618	T	C	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	79894106	.	A	AT	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=5.482;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.058;QD=3.02;ReadPosRankSum=-1.563;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:125,48:0.28:173
chr17	79966973	.	C	T	2811.77	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	79967791	rs36093868	C	CT	54.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.83;ReadPosRankSum=1.068;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr17	79977813	rs4969471	C	G	6378.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	79990972	rs10708637	CG	C	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80000798	rs140905889	GAC	G	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.705;QD=1.10;ReadPosRankSum=0.239;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:354,50:0.12:404
chr17	80006504	rs1128009	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	80006957	rs12948507	A	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	80007018	rs12939972	T	C	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	80007055	rs62078730	T	C	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	80007080	rs28404464	T	C	19738.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	80007088	rs28696285	C	G	20282.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr17	80007887	rs9915228	A	G	19085.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	80007897	rs9915742	G	T	18777.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	80008018	rs9893491	A	G	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	80008392	rs9916764	G	T	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	80008676	rs4464142	A	C	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	80009156	rs28552909	T	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	80009668	rs117999554	C	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	80011394	rs4969483	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	80013235	rs4969464	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	80014861	rs4969484	T	G	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	80020812	rs11542332	C	T	7972.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	80022656	rs34249409	C	CG	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	80023023	rs58112725	C	T	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	80023050	rs28374526	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	80038629	rs148481729	G	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	80040607	rs4969465	T	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	80043349	rs17848939	C	T	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	80043739	rs2229422	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	80050272	rs17848925	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80050554	.	CG	C	216.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr17	80051183	rs2228309	A	G	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	80059530	rs139419313	CT	C	1659.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	80059532	rs142239773	T	G	1668.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	80059850	rs78414096	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	80071244	rs7211808	T	C	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	80085283	rs73360060	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80085295	rs74001545	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	80085326	rs62078305	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	80085341	rs62078306	A	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	80085633	rs11077969	A	G	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	80085703	rs7213172	G	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	80086386	rs7406162	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.82;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80086389	rs7406163	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	80086395	rs4625783	T	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	80086597	rs4459614	C	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	80092131	rs4789753	T	C	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	80092171	rs4789752	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	80146089	rs4789729	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	80146185	rs7406116	T	C	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	80159566	rs8072670	T	C	9587.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=1.659;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:2,373:0.99:375
chr17	80195582	rs9303026	T	C	10539.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	80198007	rs9901910	G	C	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	80218800	rs35693344	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80275253	rs3176829	T	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	80280940	rs114200658	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr17	80356315	rs6502107	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	80362033	rs372506195	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	80369517	rs141178405	GAC	G	1542.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	80373431	rs34028107	C	T	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	80376170	.	GC	G	405.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80377690	rs1141463	T	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	80382172	rs74001687	C	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	80382476	.	G	C	1560.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	80391486	rs7222855	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr17	80397484	rs28561791	A	G	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	80398011	rs74004105	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	80398078	rs149171483	C	CTG	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	80404326	rs11077994	G	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80405552	rs3751913	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	80405561	rs114075632	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80416777	rs144921983	C	T	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	80416783	rs189363872	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	80422323	rs28401416	A	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80426550	rs3214988	TA	T	1181.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80430359	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=4.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.906;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr17	80438163	rs5822530	G	GCA	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.90;MQRankSum=5.160;QD=16.92;ReadPosRankSum=0.346;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr17	80438165	rs28451401	G	A	1657.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.298;MLEAC=2;MLEAF=1.000;MQ=66.50;MQRankSum=3.355;QD=35.27;ReadPosRankSum=1.236;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:4,43:0.91:47
chr17	80439606	rs61126963	CA	C	722.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=8.182;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.490;QD=12.91;ReadPosRankSum=-0.152;SOR=0.049;set=HC	GT:AD:AF:DP	1/1:6,50:0.89:56
chr17	80439925	rs9905527	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.31;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	80439934	rs61415604	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.58;ReadPosRankSum=0.524;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr17	80440251	rs73999951	C	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	80441195	.	CA	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.915;QD=0.83;ReadPosRankSum=1.210;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:89,26:0.23:115
chr17	80442565	rs73999955	G	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	80442722	rs3829567	T	C	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	80443296	rs11453409	C	CA	788.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=1.256;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:7,42:0.86:49
chr17	80443309	rs9890316	G	A	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=37.79;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	80521092	rs4789795	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	80545156	rs6502124	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	80574082	rs753569	T	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	80601769	rs59318270	TA	T	3394.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	80606079	rs9789075	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80619080	rs4789706	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	80622344	rs2279392	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	80626210	rs7221877	T	C	7182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=0.350;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,288:1.00:289
chr17	80656616	rs2243606	T	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	80674643	rs2250000	C	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	80674839	rs10714010	CG	C	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.66;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	80676946	rs111661651	A	ACCACCCC	885.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	80684638	rs2246103	T	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr17	80685126	rs2243446	T	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80693705	rs2256322	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	80693805	rs2256316	C	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	80696410	rs2253149	A	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	80696542	rs2253132	G	A	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	80696547	rs2253131	T	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	80699093	rs2252848	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	80700592	rs1994554	T	C	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr17	80700712	rs1994553	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	80706928	rs2243416	G	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	80708601	rs1056534	C	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	80730527	rs615630	T	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	80755615	rs36020328	C	CT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=1.530;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr17	80763983	rs582192	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	80765322	rs668990	C	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	80786008	rs6502134	G	A	29950.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=1347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=6.367;QD=22.42;ReadPosRankSum=14.729;SOR=0.684;set=HC	GT:AD:AF:DP	1/1:146,1190:0.89:1336
chr17	80786427	rs11364632	GC	G	28961.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=30.07;ReadPosRankSum=-1.487;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:2,961:1.00:963
chr17	80786603	rs72074640	TTGAA	T	10715.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	80786627	rs34655768	GCA	G	5739.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	80788465	rs12938126	T	C	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	80788492	rs12948179	A	G	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	80788726	rs35792712	A	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	80790442	rs3744165	T	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	80827955	rs7222931	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	80863857	rs2292971	T	C	3870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.34;ReadPosRankSum=1.705;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:2,157:0.99:159
chr17	80865526	rs2085616	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80865866	rs879715	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	80866427	rs8073910	G	T	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	80867281	rs2271916	C	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	80867333	rs2271915	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	80878389	rs1471197	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	80887244	rs1127986	T	C	13537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=-1.615;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,538:1.00:540
chr17	80887451	rs2034962	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	80890638	rs898095	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	80895055	.	A	C	1331.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	80895253	rs8079398	G	A	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	80895745	rs3785520	T	C	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	80895769	rs3785521	A	G	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	80895933	rs3785522	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	80899507	rs2292968	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80914458	rs58023177	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80914600	rs57857201	G	T	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	80914988	rs1001865	G	T	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	80915162	rs77708204	C	T	11307.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:2,437:1.00:439
chr17	80915232	rs115449172	C	G	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	80915321	rs61741987	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	80915466	rs59160990	G	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	80923432	rs7217917	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	80963331	rs9901757	C	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	80993058	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.310;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr17	81009622	rs59686903	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	81009636	rs57923322	T	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	81009811	.	C	G	836.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	81042773	rs72854237	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr17	81043039	rs9908756	A	G	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	81050747	rs112036212	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	81050833	rs74775917	A	AG	10778.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	81051007	rs7502442	G	T	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr17	81052407	rs1133217	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	81083419	rs28399067	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr18	120645	rs8096198	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,34:0.41:83
chr18	120683	rs11284195	TC	T	1589.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:98,75:0.43:173
chr18	180211	rs79829832	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=2.278;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:106,43:0.29:149
chr18	196829	rs655781	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr18	204815	rs56806027	T	A	367.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr18	204816	rs4039610	T	TAAAAA	358.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr18	224184	rs631343	C	G	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:135,110:0.45:245
chr18	225081	rs71352928	A	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr18	252559	rs657138	G	A	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:223,260:0.54:483
chr18	334758	rs2305026	T	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr18	334994	rs2305025	A	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:94,100:0.52:194
chr18	335244	rs5822558	G	GA	2559.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:125,128:0.51:253
chr18	335316	rs2012143	A	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr18	346821	rs3826628	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr18	348265	rs8085115	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr18	357570	rs685658	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr18	500665	.	G	GCCCGCGCTC	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.39;ReadPosRankSum=1.836;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr18	606993	rs62090069	G	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr18	607024	rs62090070	A	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr18	607068	rs62090071	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr18	607210	rs62090072	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr18	617928	rs9960753	A	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:147,131:0.47:278
chr18	618036	rs35437309	G	A	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:221,223:0.50:444
chr18	619050	rs546696	G	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	624783	rs495688	A	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	624824	rs495799	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	625070	rs498466	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	627044	.	C	T	710	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=3;MGOF=18;MMLQ=26;MQ=59.73;NF=29;NR=5;PP=710;QD=21.9050356632;SC=AAGAAAGAGTCGAGAAAGAAA;SbPval=0.56;Source=Platypus;TC=34;TCF=29;TCR=5;TR=34;WE=627052;WS=627003;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	645176	rs565034	C	A	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	662103	rs1001761	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr18	662370	rs2612095	T	C	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr18	669292	rs147919381	GTTGA	G	2153.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr18	670541	rs2847609	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.310;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr18	670888	rs3826626	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr18	671520	rs2853536	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:121,110:0.48:231
chr18	671648	rs2853537	A	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr18	672792	rs1059394	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr18	673016	rs699517	C	T	4314.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:203,217:0.52:420
chr18	674535	rs2847172	T	C	1402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.337;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:67,71:0.51:138
chr18	675272	rs8089075	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr18	678947	rs2741186	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr18	685797	rs2847329	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr18	688463	rs2612088	G	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-1.473;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr18	688711	rs115778295	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr18	691173	rs2612087	G	A	4151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.317;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:189,215:0.53:404
chr18	691305	rs114664632	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr18	693977	rs2305995	G	A	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:190,167:0.47:357
chr18	693986	rs3217714	GCT	G	5573.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:182,148:0.45:330
chr18	694206	rs2847602	A	G	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:130,156:0.55:286
chr18	706589	rs2612102	A	G	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:174,216:0.55:390
chr18	712319	.	TCGG	T	288	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=24;MQ=52.09;NF=3;NR=5;PP=288;QD=40.125;SC=AGAGCTGCAGTCGGCGGGGCG;SbPval=0.77;Source=Platypus;TC=20;TCF=9;TCR=11;TR=8;WE=712329;WS=712309;set=Platypus	GT:AD:AF:DP	0/1:12,8:0.40:20
chr18	724612	rs537141	A	G	8804.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr18	732812	rs4084145	G	C	3723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.180;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:163,186:0.53:349
chr18	737036	rs28722141	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr18	742858	rs9961743	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr18	743226	rs3786347	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	743436	rs3786348	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.534;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr18	745884	rs3214047	A	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-2.178;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr18	904766	rs2231181	G	C	6558.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:289,330:0.53:619
chr18	905537	rs2231183	T	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	905559	rs2231184	A	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr18	907675	rs8192597	G	A	5709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.138;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:221,279:0.56:500
chr18	1269684	rs16976454	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr18	1359323	rs114614388	T	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr18	2539016	rs8084295	C	G	11219.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr18	2544702	rs7226507	G	A	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr18	2544923	.	TA	T	159.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr18	2547500	rs2677879	G	T	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr18	2552885	rs11080957	G	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	2552892	rs11080958	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	2554807	rs34143130	T	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	2554836	rs16943442	A	G	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	2555002	rs12607882	C	T	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	2555005	rs61730027	C	T	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	2555008	rs12606220	T	G	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	2567375	rs143717748	GA	G	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr18	2572827	rs16943476	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr18	2585077	rs6506019	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	2589929	rs8097280	A	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr18	2610978	rs3817350	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	2656248	rs2430853	G	C	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr18	2666084	rs621302	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	2666256	rs634246	G	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	2666279	rs531379	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	2667005	rs7239096	T	C	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:92,134:0.59:226
chr18	2667063	rs648105	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	2673077	rs660777	A	G	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	2674253	rs596500	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	2688306	rs9962343	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr18	2707619	rs2276092	G	A	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.554;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:118,128:0.52:246
chr18	2728559	rs9961682	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr18	2728707	rs9950040	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=0.712;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	2729170	rs9952719	C	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr18	2740798	rs115632137	A	T	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.508;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:41,59:0.59:100
chr18	2751475	rs300293	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr18	2763697	rs483547	C	T	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:194,164:0.46:358
chr18	2771516	rs300291	G	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.777;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr18	2777702	.	G	T	94.77	.	AC=1;AF=0.500;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	2777719	rs76955546	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr18	2847730	rs2289687	C	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr18	2847744	rs2289686	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr18	2885110	rs35201788	C	T	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-2.721;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr18	2885118	rs592120	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-1.949;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr18	2909831	rs607411	C	G	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:207,140:0.40:347
chr18	2920482	rs16944043	G	A	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,100:0.43:231
chr18	2926900	rs143574323	T	G	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:156,166:0.52:322
chr18	2929251	rs143599992	AATC	A	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr18	2934536	rs3765622	G	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr18	2937542	.	TAAAAA	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.464;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr18	2937646	rs3826637	A	G	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:86,115:0.57:201
chr18	2937679	rs79439091	C	G	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:166,123:0.43:289
chr18	2940789	rs73375270	C	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr18	2946188	rs141092173	T	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:203,160:0.44:363
chr18	2946291	rs643507	C	T	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:156,134:0.46:290
chr18	2954439	rs7226624	C	T	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr18	2960719	rs143261167	A	G	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:145,163:0.53:308
chr18	2960969	rs17881253	TTATTAA	T	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr18	2982817	rs1539792	C	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	3067278	rs2230164	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	3072052	.	AT	A	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-0.079;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr18	3075503	rs10667835	C	CAAA	14663.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr18	3075712	rs2298539	C	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	3084007	rs16944397	A	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:122,121:0.50:243
chr18	3084982	rs80003627	T	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:54,82:0.60:136
chr18	3089522	rs948298	G	T	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	3090720	rs75748615	C	T	5585.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:242,277:0.53:519
chr18	3112568	rs8097874	C	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	3116277	rs114910754	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr18	3120037	.	G	GT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.867;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr18	3120060	rs6506068	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr18	3129131	rs8089599	T	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	3131593	rs34489383	CT	C	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr18	3135575	rs115382168	T	C	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:155,153:0.50:308
chr18	3164385	rs11659820	C	T	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	3168816	rs2230167	G	A	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	3169070	rs140809501	C	CAAAAAA	348.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr18	3176040	rs8099021	C	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	3187438	rs78760271	G	T	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:169,156:0.48:325
chr18	3187721	rs77399354	G	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr18	3188613	rs113174034	T	C	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr18	3188630	rs140742792	AG	A	1925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=9.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=2.113;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:72,112:0.61:184
chr18	3188642	rs111506648	A	G	5623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=5.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.93;ReadPosRankSum=1.031;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:78,157:0.67:235
chr18	3188664	rs36223371	TACACAC	T,TACAC	10072.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.954;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.70;MQRankSum=-0.176;QD=36.23;ReadPosRankSum=1.271;SOR=0.167;set=HC	GT:AD:AF:DP	1/2:2,201,75:0.72,0.27:278
chr18	3188715	rs73375192	T	C	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:155,299:0.66:454
chr18	3188857	rs2230166	A	G	7731.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:388,395:0.50:783
chr18	3253245	rs79676951	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:142,114:0.45:256
chr18	3272744	rs7242012	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	3272798	rs6506097	AG	TA	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	3272855	rs6506099	C	T	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	3272874	rs7407072	T	A	5049.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=24.88;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	3273153	rs7407045	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	3277306	rs3208344	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr18	3277466	rs6506100	TG	CA	18662.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr18	3277691	rs6506102	A	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	3447725	rs238137	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr18	3447871	rs151472	T	C	11333.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr18	3450455	rs238132	C	A	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:205,177:0.46:382
chr18	3452222	rs11571510	CT	C	3919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=2.816;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:280,211:0.43:491
chr18	3457244	rs451488	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr18	3457695	rs2229335	C	T	4376.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:318,233:0.42:551
chr18	3457776	rs2229336	T	G	6243.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:458,335:0.42:793
chr18	3534175	rs2072389	G	A	5955.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:245,287:0.54:532
chr18	3534282	rs34171157	G	A	7473.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:509,397:0.44:906
chr18	3534322	rs35715722	G	A	5630.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:355,287:0.45:642
chr18	3580485	rs2240900	G	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.500;MQ=50.98;MQRankSum=-1.934;QD=9.94;ReadPosRankSum=1.830;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr18	3580577	rs151338815	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr18	3656233	rs111849635	C	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:103,73:0.41:176
chr18	3729175	rs3745051	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:93,115:0.55:208
chr18	3742572	rs3745050	C	G	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr18	3874336	rs16945584	C	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,66:0.44:151
chr18	5145609	rs1395063	G	T	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	5196888	rs7240473	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr18	5196981	rs292285	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,65:0.43:151
chr18	5196992	rs292286	T	C	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	5197170	rs6506291	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-1.155;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr18	5232843	rs9963665	C	T	9279.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr18	5233105	rs3887348	C	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	5238208	rs1061666	C	T	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	5238412	rs9627	C	A	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:112,143:0.56:255
chr18	5238442	rs11795	G	C	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	5238507	rs79570056	G	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr18	5292030	rs620652	A	G	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	5292207	rs11327444	CA	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.428;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr18	5395794	rs111820233	T	TTTCACTATC	2101.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:83,57:0.41:140
chr18	5396489	rs112698199	T	TCAAA	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr18	5396513	rs58817821	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr18	5397016	rs10525487	GTTTTA	G	1075.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr18	5397323	rs8096452	C	G	4608.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:290,231:0.44:521
chr18	5407911	rs2322093	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	5410574	rs3817466	A	G	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:255,248:0.49:503
chr18	5410749	rs16948127	C	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	5420021	rs3752061	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	5423237	rs57308947	G	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	5423324	rs59407154	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr18	5423563	rs75645749	T	C	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.276;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:62,63:0.50:125
chr18	5423663	rs73379522	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr18	5433570	rs2272130	A	C	4545.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:216,237:0.52:453
chr18	5433722	rs3931700	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	5437961	rs5822861	T	TC	4918.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:204,172:0.46:376
chr18	5630531	rs4083186	G	A	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	5630689	rs9952048	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr18	5840617	rs9965310	G	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr18	5840674	rs9966028	C	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr18	5956238	rs3737353	C	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr18	5956425	rs3737354	C	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:88,106:0.55:194
chr18	5956483	rs3737357	G	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr18	5956502	rs34472471	GCT	G	1575.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr18	5960010	rs142973265	CAT	C	338.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=3.505;QD=19.93;ReadPosRankSum=0.203;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr18	5960012	.	T	TATATATATAC	218.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.803;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-3.735;QD=12.15;ReadPosRankSum=-0.398;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr18	5960026	.	T	TAC	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-3.687;QD=8.14;ReadPosRankSum=1.200;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr18	5960038	.	C	CATATATAT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-3.412;QD=5.68;ReadPosRankSum=1.446;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr18	5960040	rs199658556	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-4.401;QD=4.10;ReadPosRankSum=2.764;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr18	5960042	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-4.142;QD=6.35;ReadPosRankSum=2.606;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr18	5960044	rs199756387	CAT	C	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=1.708;QD=6.86;ReadPosRankSum=1.694;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr18	5960048	rs368307522	T	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.157;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-2.637;QD=13.18;ReadPosRankSum=-0.727;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr18	5960060	rs10658145	C	CGT	971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-2.610;QD=12.79;ReadPosRankSum=-0.262;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,33:0.43:76
chr18	5960165	rs505559	G	A	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr18	6032256	rs111748585	A	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-0.814;QD=15.03;ReadPosRankSum=-1.275;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr18	6032282	rs56241623	TA	T	114.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=0.000;QD=8.78;ReadPosRankSum=0.498;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr18	6046717	rs7234770	T	C	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	6213267	rs140895911	GTTA	G	4144.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:90,106:0.54:196
chr18	6215840	rs150158091	AAT	A	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.905;QD=16.63;ReadPosRankSum=-1.155;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr18	6237821	rs115972796	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr18	6243200	rs116485526	G	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr18	6244451	rs140275303	A	G	4788.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:213,243:0.53:456
chr18	6511473	rs4798453	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	6511669	rs4798454	T	G	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	6511759	rs58594073	T	TA	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr18	6513872	rs73379446	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	6576156	rs2004296	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,83:0.53:156
chr18	6588929	rs8094425	A	T	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr18	6588981	rs11386877	T	TA	2780.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	6589061	rs8097431	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr18	6589556	rs73391457	G	A	11437.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr18	6590781	rs9956798	T	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.783;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.647;QD=12.91;ReadPosRankSum=-0.060;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr18	6730016	rs57509765	G	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	6851267	rs8087719	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	6873646	rs11309322	CT	C	2177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=2.360;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:128,148:0.54:276
chr18	6889973	rs4239328	A	G	5006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=1.741;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:267,263:0.50:530
chr18	6890043	rs73386355	A	G	5149.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:295,271:0.48:566
chr18	6890434	rs1116757	A	G	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:132,142:0.52:274
chr18	6890591	rs1116756	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr18	6896450	rs11081282	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:101,51:0.34:152
chr18	6908976	rs116232392	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.448;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr18	6912004	rs1346931	G	A	15358.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr18	6912143	rs1056408	A	C	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	6928138	rs4798516	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr18	6928180	rs4797265	G	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr18	6928257	rs4798517	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr18	6928291	rs4797266	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr18	6928338	rs4798518	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr18	6928422	rs4797267	C	T	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:114,114:0.50:228
chr18	6928547	rs4797268	T	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr18	6947013	rs489023	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr18	6947143	rs2155697	A	C	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:117,106:0.48:223
chr18	6947362	rs12966847	C	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr18	6948614	rs62081479	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr18	6948629	rs3840904	TTCA	T	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr18	6949052	rs500355	A	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:111,80:0.42:191
chr18	6950999	rs62081480	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr18	6951060	rs17439137	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.58;ReadPosRankSum=-0.417;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr18	6956393	rs11875257	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr18	6956415	rs16950875	T	C	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	6956504	rs11270496	ACAGCTCCAGCTC	A	8358.73	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:273,221:0.45:494
chr18	6980457	rs693360	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,40:0.40:101
chr18	6980487	rs74938552	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr18	6980566	rs148925029	G	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr18	6982443	rs538815	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:116,72:0.38:188
chr18	6985506	rs616722	T	C	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.63;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr18	6985506	.	TG	CA,CG	1335	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=25;MQ=60.0;NF=31,91;NR=24,68;PP=606,1335;QD=11.9903249975;SC=GTACTGTGGCTGTGCTGAGAT;SbPval=0.49;Source=Platypus;TC=160;TCF=92;TCR=68;TR=55,159;WE=6985515;WS=6985496;set=Platypus	GT:AF:DP	0/1:0.34:160
chr18	6985507	rs523711	G	A	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.072;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:171,118:0.41:289
chr18	6985631	rs617206	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:98,83:0.46:181
chr18	6985655	rs617573	C	T	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	6986227	rs12607841	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:106,103:0.49:209
chr18	6992509	rs7243349	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:153,140:0.48:293
chr18	6999315	rs525394	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr18	6999368	rs525231	C	T	3834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.30;ReadPosRankSum=0.456;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:75,97:0.56:172
chr18	6999377	rs525206	A	G	4342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.11;ReadPosRankSum=-1.259;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:91,125:0.58:216
chr18	6999628	rs625106	T	C	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	6999694	rs693754	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	7000030	rs114439426	A	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr18	7002412	rs5822937	G	GA	2989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.914;QD=8.35;ReadPosRankSum=0.716;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:196,162:0.45:358
chr18	7008591	rs662471	T	C	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr18	7011371	rs79497917	G	A	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,132:0.53:249
chr18	7011413	rs619106	G	A	8587.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr18	7011959	rs496865	T	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr18	7012123	rs9946794	A	G	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr18	7015714	rs603258	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr18	7017322	rs539713	A	G	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	7017459	rs11420876	G	GA	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.378;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr18	7017536	rs4797276	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr18	7023371	rs684634	A	G	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:156,109:0.41:265
chr18	7024345	rs548577	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,53:0.42:127
chr18	7026031	rs28687669	C	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,48:0.44:110
chr18	7026187	rs510991	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr18	7031986	rs113133818	T	TA	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr18	7032221	rs7240655	A	G	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:127,125:0.50:252
chr18	7033037	rs621993	G	A	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr18	7033173	rs113773518	GA	G	5114.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	7033235	rs4797278	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	7033255	rs628540	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	7034448	rs566825	G	A	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	7034464	rs674733	T	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr18	7034508	rs566655	T	G	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,134:0.49:276
chr18	7035915	rs677136	A	C	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	7036249	rs16951073	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr18	7037866	rs647595	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	7042099	rs9946620	A	G	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=0.830;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr18	7042104	rs9957859	C	T	1764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.365;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:48,48:0.50:96
chr18	7042398	rs73938551	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.292;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr18	7042402	rs648161	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	7049282	rs11873300	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	7117623	rs334406	G	C	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.779;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:139,116:0.45:255
chr18	7117782	rs334407	A	G	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:109,117:0.52:226
chr18	7117887	.	CCGTCCCGCCCCGGCTTGGCCCCGCCA	C	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.545;QD=10.07;ReadPosRankSum=-4.180;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr18	7567803	rs67536179	C	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:103,104:0.50:207
chr18	7947184	rs11661715	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr18	8088969	rs488952	G	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr18	8089027	rs658110	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	8244282	rs60751184	C	CA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.067;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr18	8244353	rs79078425	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr18	8296348	rs149344518	G	A	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:197,166:0.46:363
chr18	8343381	rs16953329	T	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr18	8380473	rs657374	T	A	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	8387058	rs664201	T	G	3537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.255;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:161,177:0.52:338
chr18	8387065	rs594742	C	T	11945.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.55;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr18	8387195	rs593978	G	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:100,93:0.48:193
chr18	8387219	rs593950	G	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	8545593	rs7236554	A	G	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr18	8545617	rs7234996	G	A	16315.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr18	8545622	rs7236681	A	G	16646.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr18	8545736	rs7236864	A	G	22905.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,872:1.00:872
chr18	8545785	rs7236891	A	G	21073.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr18	8545823	rs7241117	T	C	13697.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:1,523:1.00:524
chr18	8545859	rs7237030	A	G	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr18	8609506	.	CGGA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.908;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,4:0.11:37
chr18	8705679	rs8089706	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr18	8705871	rs142882599	T	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr18	8784370	rs918272	A	G,T	12420.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=533;set=Intersection	GT:AF:DP	1/2:0.48,0.52:518
chr18	8784723	rs3744979	A	G	8742.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:443,444:0.50:887
chr18	8786027	rs201167430	C	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr18	8786117	.	C	CCCA	4752.73	.	AC=1;AF=0.500;AN=2;DP=285;set=Intersection	GT:AD:AF:DP	0/1:107,145:0.58:252
chr18	8793236	rs556991	T	C	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr18	8796551	rs540278	T	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr18	8806815	rs11877424	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr18	8809418	rs10583994	TCA	T	3842.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,115:0.54:213
chr18	8809445	rs632423	G	C	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:128,149:0.54:277
chr18	8821301	rs656602	T	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	8824590	rs610915	C	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr18	8825030	rs115043055	C	T	17840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=1926;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.402;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:994,909:0.48:1903
chr18	8825192	rs581894	A	G	4631.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:221,219:0.50:440
chr18	8825311	rs377502555	C	T	4390.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:336,233:0.41:569
chr18	8829060	.	C	G	459.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr18	9102737	.	C	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.229;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr18	9105108	rs1396740	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr18	9117867	rs906807	T	C	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	9119489	rs41274300	A	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr18	9122504	rs142452461	AT	A	857.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr18	9182328	rs377025467	G	A	146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.711;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=-1.217;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr18	9182329	rs149819427	T	TA	547.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	9182331	.	A	AACTTCAGGTAGGT	1913	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=4;MGOF=0;MMLQ=24;MQ=60.0;NF=3;NR=3;PP=1913;QD=335.5;SC=GTGGTGCGTAACCTATTGTAT;SbPval=0.65;Source=Platypus;TC=8;TCF=4;TCR=4;TR=6;WE=9182340;WS=9182318;set=Platypus	GT:AD:AF:DP	1/1:2,6:0.75:8
chr18	9182332	rs60039834	C	CTTCAGGTAGGTT	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.48;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	9235480	rs115513033	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr18	9255784	rs72939232	C	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.265;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr18	9256046	rs35889774	A	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr18	9258531	rs3744823	C	T	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=-0.072;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr18	9258537	rs3744822	T	C	2658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=0.601;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:66,68:0.51:134
chr18	9258902	rs116206533	C	T	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:198,124:0.39:322
chr18	9396597	rs2298550	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr18	9513364	rs62087371	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	9522606	rs329007	G	A	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr18	9522666	rs2241943	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	9526002	rs139290821	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr18	9530794	rs7240572	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	9547785	rs73939879	T	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr18	9549120	rs55638045	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chr18	9553179	rs403093	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	9577352	rs329000	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	9595248	rs60279081	C	CA	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr18	9614096	rs71360847	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr18	9775149	rs7232286	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr18	9775372	rs6506697	A	G	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr18	9775411	rs6506698	A	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	9791999	rs73940032	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr18	9815053	rs59446209	CT	TG	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr18	9815066	rs59718720	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr18	9815099	rs16955697	C	T	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:90,85:0.49:175
chr18	9859134	rs10695443	A	AAATATT	3465.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	9859432	rs75709326	A	G	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr18	9886890	rs601874	A	G	10584.77	.	AC=1;AF=0.500;AN=2;DB;DP=1366;set=Intersection	GT:AD:AF:DP	0/1:784,568:0.42:1352
chr18	9887271	rs146289731	G	A	14497.77	.	AC=1;AF=0.500;AN=2;DB;DP=1423;set=Intersection	GT:AD:AF:DP	0/1:708,711:0.50:1419
chr18	9887497	rs11081510	G	A	15497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=1226;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=5.654;QD=12.78;ReadPosRankSum=4.935;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:446,767:0.63:1213
chr18	9936132	rs29152	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,54:0.61:89
chr18	9936827	rs143549498	A	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:96,102:0.52:198
chr18	9944956	rs29133	T	C	4010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.342;QD=20.05;ReadPosRankSum=-0.053;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:94,106:0.53:200
chr18	9944960	rs29132	A	G	3919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.375;QD=20.31;ReadPosRankSum=0.974;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:93,100:0.52:193
chr18	9945081	rs71849777	TAGG	T	1400.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr18	9954233	rs151289099	C	CT	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-2.065;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,48:0.61:79
chr18	9954341	rs644481	T	C	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	10454960	rs28769876	C	G	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr18	10455077	rs28379930	A	G	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	10455133	rs28484275	C	T	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	10468315	rs3748418	A	G	311.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	10468326	rs115787114	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=0.551;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	10468326	.	CA	TG	128	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=1;HapScore=4;MGOF=7;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=128;QD=60.4892916207;SC=TACACGAGAGCACGCACTGTG;SbPval=0.7;Source=Platypus;TC=9;TCF=6;TCR=3;TR=3;WE=10468335;WS=10468310;set=Platypus	GT:AD:AF:DP	1/1:6,3:0.33:9
chr18	10468327	rs3748417	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	10468453	rs539412	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr18	10468679	rs73388589	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr18	10485357	rs489837	T	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.67;SOR=2.128;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	10485363	rs91958	T	C	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.20;SOR=1.940;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	10485369	rs91959	G	A	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.68;SOR=1.846;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	10487918	rs3185480	C	T	10447.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr18	10488091	rs1045584	G	T	582.56	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:2,26:0.93:28
chr18	10526187	rs2290279	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr18	10526263	rs12962879	C	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	10530664	rs71169932	CT	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=0.026;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr18	10530928	rs509370	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	10532897	rs652521	T	C	43.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	10533302	rs483995	A	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr18	10534257	rs73392623	C	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr18	10539739	rs640832	A	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	10540432	rs510110	A	C	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr18	10548536	rs377525469	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.28;ReadPosRankSum=0.966;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr18	10677880	rs5823112	GA	G	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr18	10680104	rs1944383	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr18	10680132	rs688237	C	T	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=-1.064;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr18	10680142	rs688222	T	A	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.171;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:42,33:0.44:75
chr18	10680163	rs487037	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,52:0.50:103
chr18	10691216	rs3748422	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr18	10696043	rs11661737	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr18	10696333	rs868525	C	G	3403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=0.810;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:88,88:0.50:176
chr18	10696337	rs868526	A	G	3415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=0.906;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:86,89:0.51:175
chr18	10697708	rs875957	C	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr18	10697913	rs2277857	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr18	10698010	rs6146217	C	CGGATGCATTTGTGAACAATTACTGA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.98;ReadPosRankSum=0.256;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr18	10699129	rs113682091	G	T	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:84,107:0.56:191
chr18	10702247	.	T	C	181.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr18	10715851	rs28712767	A	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr18	10731428	rs2865121	C	T	3200.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:217,173:0.44:390
chr18	10736476	rs35790059	G	GT	1459.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr18	10736515	rs12455888	T	G	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr18	10741011	rs5024299	G	A	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr18	10743986	rs7233917	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	10744108	rs8093389	G	A	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr18	10748603	rs8096037	A	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	10752666	rs7234309	C	T	4795.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:196,239:0.55:435
chr18	10758023	rs7407105	G	A	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	10759935	rs2865119	A	G	4051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.66;ReadPosRankSum=0.825;SOR=0.450;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr18	10759961	rs2865118	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	10762418	rs8095476	G	A	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.048;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:101,96:0.49:197
chr18	10762962	rs7241380	G	A	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr18	10763007	rs7227167	T	C	8633.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr18	10763218	rs2865131	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	10770345	rs77049018	T	A	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.084;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:56,54:0.49:110
chr18	10773324	rs79147809	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr18	10773338	rs77903703	C	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr18	10773858	rs76165949	G	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr18	10784733	rs3830641	GA	G	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	10785070	rs12604151	A	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	10787047	rs6505592	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	10787199	.	GA	G	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.915;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr18	10789014	rs2870106	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	10794830	rs11875564	A	G	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.395;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr18	10795051	rs7236574	C	A	2372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.94;ReadPosRankSum=-3.088;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:56,63:0.53:119
chr18	10795057	rs7236576	C	G	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-2.673;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:56,61:0.52:117
chr18	10855551	rs8085615	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr18	11148617	rs140831475	G	GGA	4967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.031;QD=17.37;ReadPosRankSum=1.805;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:151,135:0.47:286
chr18	11609811	rs8087666	G	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.31;QD=32.08;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	11609903	rs8087561	CA	GG	29694.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr18	11609916	rs140833776	G	A	7831.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:328,394:0.55:722
chr18	11609978	rs79858187	C	T	27498.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.18;QD=44.28;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chr18	11609981	rs76641843	T	C	27165.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.90;QD=45.20;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr18	11609994	rs75154847	C	T	21794.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.11;QD=42.99;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr18	11610001	rs79348909	A	G	20876.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.52;QD=45.09;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr18	11610024	rs80224205	A	G	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr18	11610042	rs76699910	G	A	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr18	11610118	rs140394422	C	G	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-0.347;QD=13.98;ReadPosRankSum=1.093;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr18	11610121	rs73943948	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.04;QD=38.80;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	11610149	rs74706935	G	A	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	11619799	rs112261054	ATGT	A	11315.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr18	11689522	rs9303742	T	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	11690019	rs9675415	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	11752736	rs28696966	C	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr18	11752943	rs1895689	C	A	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:116,89:0.43:205
chr18	11753067	rs5823172	TG	T	998.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr18	11753716	rs8095592	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr18	11753992	rs9963594	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr18	11824829	rs1647555	A	G	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	11824880	rs1647556	T	A	8316.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr18	11824886	rs1647557	T	G	8819.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=1.303;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr18	11825061	.	T	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=450.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=6.355;SOR=8.033;set=HC	GT:AD:AF:DP	0/1:157,111:0.41:268
chr18	11864707	rs4315401	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	11864720	rs2855641	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.66;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	11864720	.	AAGA	GAGA,GAGG	191	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.39;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=2,2;NR=20,11;PP=159,191;QD=8.80778238851;SC=CCTTTCAGGTAAGAGCAGCTG;SbPval=0.6;Source=Platypus;TC=22;TCF=2;TCR=20;TR=22,13;WE=11864731;WS=11864697;set=Platypus	GT:AF:DP	0/1:1.00:22
chr18	11864723	rs2855642	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.196;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-1.235;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr18	11867297	rs2855646	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr18	11872174	rs2855639	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-0.842;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	11872516	rs2071140	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	11884670	rs643652	C	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	11884937	rs10083973	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	11893554	rs34932177	C	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:112,137:0.55:249
chr18	11998946	.	AC	CG	806	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=21;HapScore=2;MGOF=115;MMLQ=25;MQ=57.38;NF=1;NR=15;PP=806;QD=53.7167421789;SC=CCCCCCCCCCACCCAATGGCA;SbPval=0.98;Source=Platypus;TC=33;TCF=8;TCR=25;TR=16;WE=11998955;WS=11998914;set=Platypus	GT:AD:AF:DP	0/1:17,16:0.48:33
chr18	11999115	rs11545506	T	C	2986.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:124,149:0.55:273
chr18	12012451	rs2028624	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=1.678;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr18	12012457	rs635370	A	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.24;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	12014411	rs643107	T	G	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	12057195	rs9959517	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,97:0.47:205
chr18	12057389	rs9959781	C	G	15367.77	.	AC=1;AF=0.500;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:373,403:0.52:776
chr18	12057403	rs9959774	A	G	15803.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:371,420:0.53:791
chr18	12057809	rs9960429	G	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	12067090	rs75963261	C	T	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:198,154:0.44:352
chr18	12067762	rs7506731	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:103,104:0.50:207
chr18	12067777	rs6505712	T	C	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	12067919	rs12966234	G	A	4014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.911;QD=9.12;ReadPosRankSum=0.319;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:231,209:0.47:440
chr18	12076504	rs12966109	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=24.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	12094006	rs9964971	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	12096249	rs1986751	G	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	12097547	rs4796945	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	12099654	rs6505715	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	12107372	.	TATA	T	1345.73	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr18	12115002	rs9959641	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	12115310	rs8091585	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	12115339	rs8091463	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	12115509	rs4519391	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	12125657	rs7243248	G	A	5021.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	12126407	rs9303759	T	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	12254250	rs28362151	G	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr18	12254268	.	T	A	411.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr18	12254785	rs11873135	G	C	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chr18	12274104	rs11545881	G	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:195,106:0.35:301
chr18	12329536	rs1129115	C	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr18	12337642	.	C	CCAG	3002.73	.	AC=1;AF=0.500;AN=2;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,81:0.41:198
chr18	12344285	rs75206140	C	T	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr18	12344375	rs114393425	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr18	12348285	rs11553521	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:212,128:0.38:340
chr18	12348553	rs148211082	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr18	12351463	rs118126456	C	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr18	12358997	rs7407640	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:169,101:0.37:270
chr18	12360157	.	ATAAAT	A	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-1.804;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr18	12360223	rs141822744	T	C	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr18	12363683	rs2298543	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.566;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr18	12363950	rs2298542	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr18	12367442	rs8093375	T	C	5393.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:219,264:0.55:483
chr18	12421442	rs3906620	T	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr18	12449984	rs35442495	GT	G	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.38;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	12453005	rs499013	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	12506670	rs78538080	A	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:118,158:0.57:276
chr18	12512385	rs5823223	CA	C	1666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.435;QD=5.34;ReadPosRankSum=0.812;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:160,152:0.49:312
chr18	12512559	rs550613	C	A	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr18	12512574	rs567709	T	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	12634934	rs35302137	CA	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.883;QD=4.92;ReadPosRankSum=-0.544;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr18	12634986	rs12454931	T	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr18	12658191	rs3902981	T	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.475;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr18	12658600	rs1062235	A	G	2961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.685;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:247,166:0.40:413
chr18	12662148	rs1129214	G	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.126;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:80,59:0.42:139
chr18	12678486	rs12966424	A	G	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr18	12680595	rs34861312	CAA	C	673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=8.941;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-2.105;QD=7.93;ReadPosRankSum=-0.197;SOR=2.509;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr18	12700092	rs2542173	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	12703067	rs3809916	A	G	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:224,160:0.42:384
chr18	12703192	rs3809919	C	T	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:202,186:0.48:388
chr18	12706829	rs148401125	C	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=1.655;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr18	12718593	rs2302768	A	G	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:206,153:0.43:359
chr18	12819041	rs7245206	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=1.575;QD=8.47;ReadPosRankSum=-0.739;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr18	12819093	rs113934905	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.868;QD=1.07;ReadPosRankSum=1.939;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr18	12883939	rs9961931	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr18	12884241	.	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.098;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr18	12884246	.	G	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.790;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr18	12951738	rs1474043	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	12955439	rs11286163	CT	C	725.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.587;MLEAC=2;MLEAF=1.000;MQ=58.97;MQRankSum=-0.335;QD=13.96;ReadPosRankSum=0.426;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:6,46:0.88:52
chr18	12979028	rs56263236	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	12982759	rs192091365	T	A	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.999;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr18	12982760	rs12955780	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.48;SOR=2.373;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	12984144	rs6505776	C	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr18	12986802	rs113784266	G	GT	1677.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.596;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.268;QD=19.07;ReadPosRankSum=1.622;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:5,83:0.94:88
chr18	13001512	rs4499304	G	C	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=7.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=0.596;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:130,74:0.36:204
chr18	13001704	rs7240309	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr18	13008369	rs6505777	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	13008701	.	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.062;QD=2.85;ReadPosRankSum=0.189;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr18	13030383	rs9964466	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	13040084	rs7229869	A	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.904;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr18	13049948	rs11441028	G	GA	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr18	13068132	rs578208	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:131,97:0.43:228
chr18	13069782	rs6505780	C	T	7334.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.041;QD=25.03;ReadPosRankSum=2.170;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:2,291:0.99:293
chr18	13072979	rs1787013	T	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:176,103:0.37:279
chr18	13087047	rs61739369	A	G	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:104,151:0.59:255
chr18	13087453	rs114960572	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	13087789	rs472992	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	13087815	rs527839	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=0.497;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	13088673	rs498685	T	C	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr18	13089038	rs147735216	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.85;ReadPosRankSum=1.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	13089354	rs75076422	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	13095609	rs474337	T	C	11373.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr18	13096436	rs556371	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	13103814	rs116475654	A	T	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.753;QD=13.11;ReadPosRankSum=1.827;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:32,53:0.62:85
chr18	13114025	rs75846614	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr18	13116432	rs1786263	G	T	10976.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr18	13459840	rs78946079	G	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	13459879	rs138247051	T	TA	5569.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	13666845	rs76854156	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	13671689	.	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.068;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr18	13671976	.	C	CA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.285;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:99,28:0.22:127
chr18	13731407	rs61281036	C	CA	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr18	13742365	rs4239313	A	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	13759816	rs4797812	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	13759820	rs4797813	G	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	13762011	rs4461147	C	A	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	13825727	rs1541276	A	C	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:198,128:0.39:326
chr18	13826088	rs17848292	C	T	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:395,237:0.38:632
chr18	13826391	rs2236700	C	G	8122.77	.	AC=1;AF=0.500;AN=2;DB;DP=1123;set=Intersection	GT:AD:AF:DP	0/1:677,440:0.39:1117
chr18	13826508	rs2236701	C	T	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:259,174:0.40:433
chr18	13884685	rs28926182	A	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr18	13885607	rs35534963	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,61:0.39:157
chr18	14105016	rs61609068	C	A	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:247,150:0.38:397
chr18	14105923	rs2159940	T	C	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	14156143	rs149108958	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=9.901;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-3.669;QD=3.81;ReadPosRankSum=0.354;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr18	14156241	rs115684852	A	T	1280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-7.269;QD=10.50;ReadPosRankSum=0.264;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:52,70:0.57:122
chr18	14156370	rs146401622	A	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr18	14156653	.	C	CA,CAAG	6530.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=290;set=Intersection	GT:AF:DP	0/1:0.59:282
chr18	14156655	.	GT	AA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=4;MGOF=2;MMLQ=27;MQ=55.64;NF=26;NR=37;PP=2944;QD=20;SC=AAACAAGGCAGTCAATCATAA;SbPval=0.58;Source=Platypus;TC=128;TCF=54;TCR=74;TR=63;WE=14156664;WS=14156643;set=Platypus	GT:AD:AF:DP	1/0:65,63:0.49:128
chr18	14156655	.	G	GAA	6614.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-1.845;QD=23.46;ReadPosRankSum=1.321;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:117,165:0.59:282
chr18	14156656	.	T	A	6623.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-2.043;QD=23.41;ReadPosRankSum=1.034;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:117,166:0.59:283
chr18	14157213	rs144491817	G	T	5727.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:197,274:0.58:471
chr18	14157373	rs7505684	T	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:44,62:0.58:106
chr18	14179364	rs143809162	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr18	14179488	rs111671782	C	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	14378446	rs12604202	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr18	14378533	rs2137484	G	C	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	14393878	rs9960054	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=2.086;QD=13.66;ReadPosRankSum=0.588;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr18	14542979	rs200806970	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=7.817;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-11.690;QD=0.87;ReadPosRankSum=0.599;SOR=1.291;set=HC	GT:AD:AF:DP	0/1:476,86:0.15:562
chr18	14543139	rs28535987	T	C	8811.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr18	14748391	rs114423543	G	A	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr18	14752768	rs45620343	G	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	14752957	rs12457503	G	A	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr18	14779969	rs9675365	C	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr18	14796214	rs9303863	G	T	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	14797570	rs9748260	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.395;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.573;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr18	14830262	.	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-7.274;QD=1.92;ReadPosRankSum=0.087;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr18	14837168	rs56391489	GT	G	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr18	14848821	rs28555630	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.87;QD=25.04;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	14848935	rs3878726	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.16;QD=28.09;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	14850375	rs3126404	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	14851756	rs148887033	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.32;QD=33.49;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	14852335	rs12386087	C	A	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	14852496	.	A	AAT	988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.016;QD=15.21;ReadPosRankSum=-0.309;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr18	14866355	rs1770756	T	C	20825.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:8,468:0.98:476
chr18	14866373	rs1713892	G	C	21249.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:1,494:1.00:495
chr18	15003932	rs114392021	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr18	15004728	rs11080802	A	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr18	15005736	rs4890719	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr18	18534702	rs2663699	T	C	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr18	18534948	rs201390233	G	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:301,35:0.10:336
chr18	18540293	.	T	C	268.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr18	18981382	.	A	G	54.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.70;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	18983766	rs2117317	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr18	19020160	rs9948725	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr18	19020197	.	ATC	A	2541.73	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr18	19024150	rs4368249	T	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr18	19034556	rs3794938	T	C	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:98,107:0.52:205
chr18	19048666	rs8083036	A	G	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:142,169:0.54:311
chr18	19065494	rs7234335	C	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr18	19079537	rs8087553	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	19079853	rs4800747	A	G	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-0.935;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:148,128:0.46:276
chr18	19100517	rs1395251	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr18	19100758	rs34960489	A	ATCT	4953.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	19119801	rs1818274	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-0.941;QD=9.88;ReadPosRankSum=0.466;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr18	19119813	.	TA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.860;QD=2.27;ReadPosRankSum=0.765;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr18	19119974	rs35031202	GAT	G	733.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr18	19153494	rs973730	C	T	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr18	19154143	rs13381941	G	A	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:189,210:0.53:399
chr18	19192255	rs2850556	C	T	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	19202890	rs61664136	AT	A	60.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.76;ReadPosRankSum=2.200;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr18	19208851	rs2847117	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	19282515	rs148633631	A	ATTTTG	1419.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	19284462	rs76867119	C	T	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-1.044;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:220,114:0.34:334
chr18	19284677	rs150746310	C	CGAGCGGGCGA,CGAGCGGGCGAGAGCGGGCGAGAGCGGGCGAGAGCGGGCGA	1693.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.64,0.36:33
chr18	19345704	rs3017047	A	C	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:122,87:0.42:209
chr18	19345932	rs3017048	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr18	19358201	rs3017038	T	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr18	19395864	rs2959513	A	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr18	19408950	rs9989532	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr18	19423963	rs3216119	GT	G	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	19761674	.	TTAA	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=31;QD=28.5;SC=CTGAATATGTTTAATATATTC;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=2;WE=19761684;WS=19761664;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr18	19763011	rs3764962	A	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:140,69:0.33:209
chr18	19780527	rs11352746	AC	A	6587.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	20513374	rs7227168	C	T	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	20526473	rs61195791	A	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr18	20529855	rs9807119	G	C	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	20555219	rs2336916	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	20573866	rs62095211	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	20577669	rs17852769	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	20768667	rs80256063	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr18	20774318	rs2278453	A	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr18	20793995	rs2304301	G	A	3771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=0.911;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:136,188:0.58:324
chr18	20814542	rs11430114	A	AT	634.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr18	20817276	rs12185467	G	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr18	20932285	rs141669749	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr18	20936632	rs139933592	G	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr18	20945768	rs11663274	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.568;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr18	20950158	rs148939309	GA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.898;QD=0.52;ReadPosRankSum=1.884;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr18	20950355	rs59227730	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,21:0.27:78
chr18	20953720	rs8099409	G	A	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	20964769	rs8094375	A	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	21017835	rs12967028	C	T	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.232;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:128,74:0.37:202
chr18	21017835	.	CT	TC	359	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=12;NR=17;PP=359;QD=14.2230301677;SC=TCGTCCCCTTCTCGGGGATCC;SbPval=0.59;Source=Platypus;TC=107;TCF=45;TCR=62;TR=29;WE=21017844;WS=21017825;set=Platypus	GT:AD:AF:DP	0/1:78,29:0.27:107
chr18	21017836	rs7226498	T	C	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	21033582	rs8086258	G	C	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	21043106	rs72884533	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr18	21055092	rs7235571	A	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	21061127	rs73967109	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr18	21061391	rs1801991	T	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	21088081	rs1652381	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	21089320	rs375025352	AAT	A	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr18	21107628	rs111369676	G	GTATTGTATTTCT	1443.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	21107892	rs142968496	G	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr18	21109145	rs34222289	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:134,95:0.41:229
chr18	21109250	rs1788825	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr18	21109269	rs1652375	T	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	21110073	rs73967112	G	A	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:217,120:0.36:337
chr18	21119291	rs6507720	A	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:58,70:0.55:128
chr18	21120035	rs7239575	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr18	21123536	rs11299077	TA	T	342.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.574;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.548;QD=13.18;ReadPosRankSum=2.017;SOR=1.770;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr18	21124834	rs35047242	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr18	21124907	rs3837910	A	AC	271.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:67,20:0.23:87
chr18	21124908	.	C	CCA	2012.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr18	21124945	.	C	G	3957.77	.	AC=2;AF=1.00;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	21131533	rs9963518	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr18	21134569	rs11340795	CA	C	93.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.658;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr18	21166329	rs2303880	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.342;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr18	21192014	rs34612679	A	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr18	21192261	rs1652366	G	T	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	21199310	.	G	C	325.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr18	21242754	rs7229310	C	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=6.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=-1.232;SOR=1.416;set=HC	GT:AD:AF:DP	0/1:43,41:0.49:84
chr18	21242858	rs192694647	G	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr18	21293869	rs112340800	CT	C	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr18	21294022	rs115800115	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.477;QD=4.90;ReadPosRankSum=-1.841;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:94,44:0.32:138
chr18	21294117	rs34200895	TA	T	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=4.81;ReadPosRankSum=1.708;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr18	21328088	rs9955745	G	T	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,67:0.54:124
chr18	21329577	rs10502440	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr18	21338276	rs6507894	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr18	21338515	rs11308832	TC	T	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	21343354	rs7232856	A	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr18	21353351	rs6507907	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr18	21393229	rs11420756	A	AT	40.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.18;ReadPosRankSum=-0.253;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr18	21395358	rs2155841	G	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	21396557	rs12608087	C	T	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:76,110:0.59:186
chr18	21400028	rs6507956	G	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	21404334	rs1941521	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr18	21413869	rs9962023	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr18	21414110	rs1109950	G	A	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	21427549	rs35035965	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:216,153:0.41:369
chr18	21438632	rs8092476	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr18	21441461	rs8093035	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr18	21441484	rs8093042	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr18	21469993	rs958631	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:121,97:0.44:218
chr18	21470198	rs77144889	T	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr18	21481340	rs1154227	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=1.345;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	21511089	rs1154233	A	G	8680.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr18	21511172	rs1258107	G	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	21531512	rs2288593	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr18	21644091	rs56229252	G	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.224;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr18	21662816	rs2305024	A	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr18	21693671	rs894931	G	A	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	21694618	rs4800176	G	A	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	21696599	rs28582690	A	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	21698540	rs8083625	C	T	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.439;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:96,46:0.32:142
chr18	21698618	rs10537168	AT	A	420.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.948;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr18	21703649	rs9956079	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	21703706	rs58104245	C	CT	149.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=1.109;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr18	21706607	.	AT	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.703;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr18	21710321	rs12970083	C	T	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	21735610	rs74725347	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.528;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr18	21736933	rs1049683	T	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	21740031	rs149126027	CTG	C	3326.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr18	21743365	rs7243112	C	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr18	21743391	rs7243722	A	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	21747472	rs76435246	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	21752366	rs2077984	A	G	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr18	21759531	rs16940533	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	21883552	rs1487377	G	A	2515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.693;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=1.868;SOR=0.306;set=HC	GT:AD:AF:DP	1/1:1,99:0.99:100
chr18	21891975	rs2337961	A	G	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=2.209;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:80,90:0.53:170
chr18	21894351	rs12966893	A	G	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr18	21894409	rs12966456	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr18	21897189	rs34306542	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr18	21901561	rs114117652	A	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr18	21901628	rs34481824	T	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr18	21912865	rs2848605	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	21938384	rs7226913	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr18	21938396	rs7226922	T	C	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr18	21938658	rs7227401	T	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=2.363;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr18	21946572	rs656487	T	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.933;QD=10.02;ReadPosRankSum=-0.067;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr18	22008913	rs582358	C	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	22010421	rs9783924	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr18	22017752	rs1941814	C	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	22020543	rs677688	C	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	22029928	rs2739104	C	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr18	22056970	rs11662595	A	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:141,93:0.40:234
chr18	22804244	rs4129657	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	23603804	rs34038435	AT	A	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr18	23670399	rs149043034	T	TC	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr18	23670632	rs112442364	T	G	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr18	23714109	rs7235001	T	C	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	23772573	rs2069310	G	C	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr18	23807027	rs78262333	G	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr18	23865868	rs75973076	A	G	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=1.089;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:95,81:0.46:176
chr18	23875239	.	A	G	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.319;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:44,48:0.52:92
chr18	23875336	rs1382260	T	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.86;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	23875336	.	TTGGAAGGCAA	ATGGAAGGCAA,ATGGAAGGCAG	71	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=12;MMLQ=27;MQ=60.0;NF=1,0;NR=11,4;PP=71,22;QD=8.81426771227;SC=GACTGATTTCTTGGAAGGCAA;SbPval=0.64;Source=Platypus;TC=12;TCF=1;TCR=11;TR=12,4;WE=23875354;WS=23875326;set=Platypus	GT:AF:DP	0/1:1.00:12
chr18	23875346	rs115632785	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.164;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr18	23907227	rs79455866	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr18	23937493	rs114013059	A	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.622;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr18	23937533	rs116472435	A	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.714;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr18	23970058	rs73395974	A	G	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,95:0.57:167
chr18	24035675	rs3753	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr18	24442107	rs72557970	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-1.879;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr18	24442210	rs61731042	A	G	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-3.710;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:88,82:0.48:170
chr18	24445433	rs3875089	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr18	24445692	rs162008	C	T	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:114,121:0.51:235
chr18	24496491	.	T	G	2233.77	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:125,116:0.48:241
chr18	25565082	rs1220144	A	G	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr18	25570228	rs1628684	G	C	7737.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr18	25572837	rs1662733	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	25573308	rs1662734	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	25573622	rs2957286	G	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	25727760	.	G	GA	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.455;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:163,54:0.25:217
chr18	25757021	.	A	AGGC	766.73	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr18	28586964	rs1313586	A	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,76:0.53:143
chr18	28598866	rs5823777	CTG	C	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr18	28605715	rs202439	A	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr18	28610901	rs34818241	G	GA	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr18	28611139	rs276936	A	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr18	28622524	rs276924	C	T	2896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.053;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:155,147:0.49:302
chr18	28647936	.	A	T	114.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr18	28659724	rs1658128	T	C	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	28662776	rs1790702	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.192;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr18	28666526	rs35717505	T	TTAA	2190.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	28671212	rs1790683	T	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr18	28671381	rs34593516	GA	G	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr18	28673565	rs12954874	T	C	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:94,106:0.53:200
chr18	28711519	rs1789072	C	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	28719674	rs1789043	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	28719871	.	A	T	325.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr18	28728384	rs2577067	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	28734749	rs2249810	A	G	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	28737198	rs2246736	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	28737299	rs2118342	T	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	28739495	rs35550730	C	CAA	615.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.616;QD=18.66;ReadPosRankSum=0.641;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr18	28898201	rs1834582	A	G	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr18	28898294	rs1426310	A	G	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:126,90:0.42:216
chr18	28906460	rs57200666	T	C	252.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.98;ReadPosRankSum=-0.473;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	28906461	rs60498108	G	A	252.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.98;ReadPosRankSum=-0.473;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	28907096	rs765054	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	28908090	rs2303465	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	28911606	rs16961651	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr18	28913599	rs12967407	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:137,110:0.45:247
chr18	28913929	rs5823800	TTC	T	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr18	28916230	rs74277377	G	GAT	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	28916290	rs6506917	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	28919779	rs8091003	A	C	2140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=2.301;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:76,105:0.58:181
chr18	28919794	rs8091117	C	A	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=3.711;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:96,118:0.55:214
chr18	28919884	rs16961689	A	C	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-1.013;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:174,165:0.49:339
chr18	28919911	rs61730306	A	G	4844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=2.062;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:143,128:0.47:271
chr18	28919913	rs34302455	G	A	4844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=3.006;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:145,125:0.46:270
chr18	28923983	rs11660224	AT	CA	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	28934298	rs61730308	A	G	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:111,98:0.47:209
chr18	28934473	rs61730309	G	A	4189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=0.433;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:138,113:0.45:251
chr18	28934481	rs140793832	T	C	4152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.836;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:137,109:0.44:246
chr18	28934621	rs16961692	T	A	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:187,179:0.49:366
chr18	28934715	rs16961693	C	T	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:145,91:0.39:236
chr18	28934973	rs1042754	T	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:140,102:0.42:242
chr18	28935375	rs8099566	C	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr18	28969016	rs147207368	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr18	28983500	rs9945567	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:102,53:0.34:155
chr18	28986333	rs4799570	A	C	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	28989674	rs1020839	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr18	28991061	rs17729233	T	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr18	28991505	rs3903775	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr18	28992826	rs112653254	A	C	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,76:0.54:141
chr18	29028057	rs141268501	T	TTTTG	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	29036316	rs3848485	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	29037131	rs17660414	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr18	29038536	rs7240789	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:116,75:0.39:191
chr18	29039719	rs112918971	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr18	29039761	rs3737365	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr18	29055957	rs1380866	A	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	29098323	rs2276149	G	A	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr18	29098345	rs9807377	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr18	29101230	rs55657337	T	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=17.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=2.387;SOR=4.118;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr18	29104564	rs3737378	C	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr18	29104698	rs2230233	C	T	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr18	29104878	rs62095194	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=1.108;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:37,34:0.48:71
chr18	29116462	rs2276150	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr18	29122799	rs2278792	G	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.057;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr18	29125854	rs1042769	A	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:81,93:0.53:174
chr18	29126670	rs1791235	T	C	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr18	29178379	rs1667251	T	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr18	29178562	rs148538950	G	A	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:231,188:0.45:419
chr18	29211163	rs10657836	C	CTT	491.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.42;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	29225280	rs146313105	G	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:104,125:0.55:229
chr18	29237765	rs1449086	T	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	29264182	rs1449081	G	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	29426552	rs34846731	A	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-2.653;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr18	29426868	rs682279	A	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	29435778	.	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=4.369;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.864;QD=1.14;ReadPosRankSum=-1.111;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr18	29447468	rs2291238	T	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr18	29487596	rs4581778	T	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.157;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr18	29497573	rs6506948	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	29599084	rs73413947	A	T	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr18	29617255	rs9947278	T	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	29672559	rs8095867	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	29672748	rs116403100	G	C	7505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.537;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:433,394:0.48:827
chr18	29691696	rs114759061	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	29708981	rs684359	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	29771974	rs16962783	C	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	29775163	.	C	T	114.90	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	29775226	.	T	TACACAC	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.64;ReadPosRankSum=-0.078;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr18	29784370	rs17663067	C	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-2.016;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr18	29788107	rs4799640	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr18	29790378	rs2241891	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr18	29793526	rs335518	C	T	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:165,170:0.51:335
chr18	29795076	rs173032	T	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr18	29795101	rs233223	T	C	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	29797921	rs616114	C	T	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr18	29797958	rs680321	T	C	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr18	29800119	rs673408	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	29847739	rs35950532	G	GT	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr18	29848436	rs3859366	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,58:0.51:113
chr18	29850086	rs28394787	T	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr18	29867091	rs16962974	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr18	29867504	rs16962977	T	C	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:127,126:0.50:253
chr18	29890042	rs616601	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.43;ReadPosRankSum=-0.169;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr18	29890297	rs683701	G	C	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:119,150:0.56:269
chr18	29890411	rs625361	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr18	29890448	rs628733	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=8.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.531;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr18	29972724	rs3786310	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	29972964	rs3786308	A	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr18	30050356	rs11664566	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	30257000	rs1523580	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr18	30275526	.	GA	G	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.208;QD=7.30;ReadPosRankSum=-1.253;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr18	30350021	rs61737323	G	A	5917.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:190,283:0.60:473
chr18	30517995	rs75955534	T	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr18	30804756	rs466113	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	30846895	rs9965081	A	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	30908047	rs8087168	A	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.25;QD=23.21;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	30913033	.	G	GA	30	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=0.9998;HP=16;HapScore=2;MGOF=3;MMLQ=27;MQ=57.88;NF=1;NR=1;PP=30;QD=17.0;SC=TCAATTTTAAGAAAAAAAAAA;SbPval=0.56;Source=Platypus;TC=3;TCF=2;TCR=1;TR=2;WE=30913041;WS=30913023;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr18	30936121	rs9948028	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	31187706	rs4799350	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.45;ReadPosRankSum=2.989;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr18	31224761	.	A	AT	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.106;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr18	31225030	rs4799705	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr18	31241480	.	G	A	137.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	31241497	rs9304126	C	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	31263320	rs8086318	G	A	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	31263603	rs62092392	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr18	31312106	rs10432168	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	31314196	rs34501189	A	G	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	31318336	rs1845385	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	31318376	rs1493910	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	31319675	rs9946495	A	G	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:161,121:0.43:282
chr18	31320229	rs2282632	A	G	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr18	31324056	rs16964887	T	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:120,84:0.41:204
chr18	31324934	rs7232237	A	G	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr18	31463130	.	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.258;QD=15.54;ReadPosRankSum=-1.110;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr18	31463134	.	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.143;QD=15.55;ReadPosRankSum=-1.333;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr18	31463136	.	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.090;QD=14.95;ReadPosRankSum=-1.637;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr18	31463137	.	A	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.090;QD=14.95;ReadPosRankSum=-1.688;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr18	31463174	.	TA	T	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.026;QD=6.12;ReadPosRankSum=0.106;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:46,38:0.45:84
chr18	31463448	rs368732680	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	31709810	.	C	CT	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.861;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:55,58:0.51:113
chr18	32386340	rs9952711	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,93:0.51:184
chr18	32418265	rs1954861	G	A	99.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.16;ReadPosRankSum=-0.566;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr18	32431910	rs115712655	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:91,73:0.45:164
chr18	32459704	rs2288085	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr18	32470291	rs9944927	G	A	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	32470459	rs7227051	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr18	32558525	rs34534618	C	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	32650341	rs3744923	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr18	32650369	.	AT	A	54.73	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	32711893	.	TTC	T	39.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:30,5:0.14:35
chr18	32720189	rs3786314	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr18	32822382	rs4799374	G	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	32823757	rs62096496	A	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr18	32823905	rs1054890	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	32834186	rs2249769	T	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr18	32838807	rs7229055	T	C	220.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=22.08;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	32865043	rs115689111	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr18	32886528	rs147217916	T	TAGTC	1758.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	32887914	rs1131709	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr18	32887933	rs9963614	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	32917644	rs2032729	T	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr18	32917780	rs5823970	G	GA	295.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	32948446	.	TTTTA	T,TTTTATTTATTTATTTATTTA	1763.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=39.19;SOR=1.414;set=HC	GT:AD:AF:DP	1/2:0,33,12:0.73,0.27:45
chr18	32948510	rs2909340	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr18	32949555	rs9963473	T	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr18	33048554	rs3088182	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr18	33058318	.	G	GA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.42;ReadPosRankSum=0.777;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr18	33243536	rs3744989	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr18	33647254	rs1789517	A	C	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr18	33706614	rs1789528	C	G	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr18	33718201	rs74715150	T	TC	1453.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	33721325	rs3819174	C	T	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.380;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:103,104:0.50:207
chr18	33767479	rs11665282	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr18	33775371	rs2298601	G	A	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.97;ReadPosRankSum=1.119;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr18	33775379	rs2298602	C	T	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=0.714;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr18	33778607	rs596644	C	A	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr18	33779821	rs646424	C	A	8663.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr18	33779855	rs623053	C	T	9933.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chr18	33779896	rs540967	A	G	12230.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr18	33780020	rs623558	A	G	14487.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr18	33780188	rs150272391	C	T	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:206,156:0.43:362
chr18	33780236	rs139002197	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:159,127:0.44:286
chr18	33784959	.	C	CAAAAAA,CAAAAA	198.80	.	AC=2,0;AF=1.00,0.00;AN=2;DP=6;set=Intersection	GT:AF:DP	1/1:1.00:5
chr18	33784991	rs189848162	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr18	33785093	rs678560	G	A	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	33785185	rs667667	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr18	33785304	rs667195	T	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	33793511	rs687387	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	33795425	rs631108	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	33828805	rs4799859	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr18	33828980	rs567458	C	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	33829077	rs568388	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	33831044	rs518413	C	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	33831315	rs58430324	C	T	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:120,110:0.48:230
chr18	33831390	.	C	T	636.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr18	33839956	rs78187031	C	T	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.335;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-2.471;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:117,89:0.43:206
chr18	33848663	rs111317566	A	ATACAT	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	34081849	rs17565834	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.643;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr18	34174725	rs114251216	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr18	34174958	rs8087763	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr18	34175003	rs115746392	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr18	34192144	rs77756799	A	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr18	34192160	rs76432596	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr18	34205415	rs59051454	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	34229169	.	CGTTGTT	C	528	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=3;HapScore=2;MGOF=86;MMLQ=21;MQ=60.61;NF=1;NR=11;PP=528;QD=44.9166666667;SC=ATTATTATTTCGTTGTTGTTG;SbPval=0.88;Source=Platypus;TC=18;TCF=3;TCR=15;TR=12;WE=34229182;WS=34229159;set=Platypus	GT:AD:AF:DP	0/1:6,12:0.67:18
chr18	34233231	rs1893434	C	T	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	34261559	rs542241	T	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr18	34261581	rs34100890	AG	A	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	34273039	rs479570	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	34273279	rs61735993	C	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:128,87:0.40:215
chr18	34273440	rs483351	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr18	34289364	rs11661275	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr18	34326807	rs116049732	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr18	34340486	rs9946701	C	G	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=1.200;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:37,60:0.62:97
chr18	34408969	rs9958080	C	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	34475793	rs368540498	G	A	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:129,98:0.43:227
chr18	34475826	rs1246622	C	T	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	34647176	rs3747895	T	C	10801.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:1,414:1.00:415
chr18	34647323	rs3747896	T	A	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	34664093	rs323295	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	34809470	rs1786073	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	34809591	rs1631150	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	34850846	rs1443638	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr18	35065396	rs4799451	T	C	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	35237129	rs11873400	A	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr18	39542407	rs33946724	GAT	G	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr18	39570683	rs11082257	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.91;ReadPosRankSum=-0.194;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr18	39584487	rs16975526	G	A	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:81,93:0.53:174
chr18	39623942	rs534507	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	40323497	rs1804730	G	T	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr18	40503735	rs10633642	G	GA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.517;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr18	40613840	rs12954451	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr18	40851876	rs16977443	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr18	40853969	rs16977447	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr18	41559268	rs7230555	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr18	41559321	rs7229587	C	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=1.664;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr18	42456653	rs663651	G	A	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:90,108:0.55:198
chr18	42456670	rs3085861	C	CTCTT	3916.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:84,100:0.54:184
chr18	42530796	rs113053616	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chr18	42533130	rs8096662	A	G	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	42618580	rs35460875	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr18	43206985	rs1484873	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr18	43221341	rs7233416	T	C	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:86,88:0.51:174
chr18	43243679	rs8092227	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	43245986	rs7234198	T	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	43246156	rs9960464	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr18	43246779	rs2170973	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	43247001	rs2156609	C	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	43247784	rs9964193	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	43248504	rs6507631	T	C	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	43248509	rs10451385	T	C	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	43248578	rs9304319	C	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.43;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	43248578	.	CTAATAACTA	ATAATAACTA,ATAATAACTC	127	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=36;MMLQ=27;MQ=60.0;NF=6,2;NR=15,7;PP=108,127;QD=6.79862916891;SC=GTCCACTGGACTAATAACTAA;SbPval=0.56;Source=Platypus;TC=21;TCF=6;TCR=15;TR=21,9;WE=43248595;WS=43248568;set=Platypus	GT:AF:DP	0/1:1.00:21
chr18	43248587	rs187246344	A	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.834;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr18	43252786	rs1531926	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	43253100	rs1000501	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr18	43258919	rs72437878	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.654;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr18	43262359	rs3745009	G	A	4767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.349;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:256,249:0.49:505
chr18	43262501	rs3745008	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr18	43262532	rs3745007	C	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr18	43307455	rs3861806	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	43310313	rs113578396	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr18	43310415	rs2298720	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,75:0.46:162
chr18	43311054	rs113029149	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,68:0.53:129
chr18	43311131	rs28994287	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr18	43314401	rs35812340	G	GA	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr18	43316538	rs2298718	A	G	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr18	43319060	rs473429	T	C	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr18	43319359	rs531281	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	43329719	rs1032119	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-1.595;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr18	43405792	rs1440822	T	C	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:154,102:0.40:256
chr18	43416974	rs9950673	T	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr18	43418718	rs78592672	A	G	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:104,132:0.56:236
chr18	43419003	rs2919643	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr18	43422280	rs500899	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	43432358	rs508915	A	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	43435666	rs150647938	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr18	43435738	rs514001	A	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	43445466	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.126;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr18	43446734	rs3826633	T	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	43456075	rs9950550	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	43481075	rs1893523	G	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,119:0.47:255
chr18	43484125	rs114132677	T	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr18	43487885	.	TAA	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.41;ReadPosRankSum=0.700;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr18	43492121	rs67738770	CAGAG	C	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	43497710	rs3744998	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr18	43502190	rs1075906	G	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr18	43502494	rs148777356	A	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:91,75:0.45:166
chr18	43505558	rs4476262	C	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	43523312	rs3745000	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr18	43523819	.	A	G	41.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr18	43524145	rs75005183	C	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr18	43528362	rs142428797	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr18	43535264	rs145177562	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr18	43547127	rs11301517	TG	T	3420.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	43565195	rs1048827	G	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	43565380	rs57589400	A	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:99,73:0.42:172
chr18	43565399	rs58786055	C	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:95,61:0.39:156
chr18	43565514	rs60116181	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr18	43568593	rs3844540	T	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr18	43568717	rs2276199	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr18	43570777	rs7242970	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr18	43570814	rs7243109	C	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr18	43572178	rs113089939	A	AAAG	2759.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:91,74:0.45:165
chr18	43573589	rs73953951	T	C	4348.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:212,222:0.51:434
chr18	43577631	.	TC	T	75.25	.	AC=1;AF=0.500;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.05;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr18	43578623	rs10468860	A	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr18	43579395	rs55966192	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,55:0.42:132
chr18	43585536	rs9675392	A	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	43652203	rs8085444	G	A	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.485;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:56,65:0.54:121
chr18	43652345	rs3745002	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.865;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr18	43666480	rs369105133	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr18	43666861	rs8095031	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr18	43666952	rs8097521	C	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,46:0.39:119
chr18	43667528	rs7244921	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=1.932;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr18	43668321	rs11659795	G	T	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	43669980	rs2298787	T	C	3254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.400;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:154,163:0.51:317
chr18	43678024	rs56181324	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr18	43678035	rs3753069	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr18	43678328	rs143002048	ACC	A	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=11.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=0.901;SOR=3.816;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr18	43678333	.	CT	C	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.261;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr18	43678334	.	T	C	287.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.249;SOR=2.356;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr18	43678336	.	T	C	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=12.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-0.331;SOR=3.952;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr18	43914204	.	AGCC	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.397;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:77,9:0.10:86
chr18	43914438	rs8084936	A	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	44036144	.	G	A	510.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr18	44063598	rs1377016	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr18	44102099	rs376122149	C	T	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:328,212:0.39:540
chr18	44104333	.	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr18	44114362	rs7244681	G	A	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr18	44114473	rs436433	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	44122010	rs10775482	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	44124899	rs182538477	A	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr18	44126909	rs1893566	T	C	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr18	44135027	rs732108	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr18	44135050	rs732109	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr18	44135143	rs11665444	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr18	44137415	.	GC	G	2119.73	.	AC=1;AF=0.500;AN=2;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,85:0.46:185
chr18	44138894	rs538314	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.865;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr18	44138902	rs4243280	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.527;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=-0.401;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr18	44139626	rs111330585	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr18	44146393	rs188517529	C	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:117,99:0.46:216
chr18	44146562	rs113726084	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	44171827	rs12606558	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr18	44173449	rs328145	A	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr18	44181596	rs674948	G	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	44237098	rs34951935	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr18	44272034	rs533027	A	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.021;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr18	44336499	rs115140167	G	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:116,77:0.40:193
chr18	44409581	rs72907142	C	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-1.299;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr18	44409625	rs114596483	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr18	44424105	.	G	GAA	309.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.83;ReadPosRankSum=1.593;SOR=2.788;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr18	44424651	rs377729779	CT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.447;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	44426656	rs8092951	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr18	44499902	rs79163746	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr18	44526030	rs116490029	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.13;ReadPosRankSum=-0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	44526798	rs2187092	A	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr18	44560300	rs3744863	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-1.310;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr18	44560429	rs892586	C	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	44560875	rs2010834	C	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:173,127:0.42:300
chr18	44561100	rs2571028	C	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=2.797;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr18	44561516	rs2571027	C	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr18	44572996	rs114959999	A	C	106.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr18	44580919	rs2576041	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr18	44585955	rs7233515	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.727;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:46,35:0.43:81
chr18	44589380	rs111633829	C	T	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.790;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:140,117:0.46:257
chr18	44595809	rs2289036	A	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr18	44610634	rs73954224	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.272;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr18	44610718	rs16954999	T	C	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.394;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:64,79:0.55:143
chr18	44624410	rs116002379	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr18	44624592	rs35678878	C	CAA	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	44635048	rs2635058	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	44660923	rs7230131	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr18	44692921	rs73954246	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-1.709;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr18	44693469	rs77335447	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.562;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr18	44702502	rs12968552	A	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr18	44702722	.	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,90:0.58:156
chr18	44771419	rs201348002	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.837;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr18	44771849	.	A	ATTTTT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.583;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr18	45371686	rs9956201	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr18	45374758	rs77958995	A	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr18	45555613	rs55732061	G	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr18	45555829	rs7231151	T	C	5380.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:426,295:0.41:721
chr18	45567545	rs141199664	A	AG	2074.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	45706779	rs7228157	T	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:97,94:0.49:191
chr18	46196856	rs3830253	AC	A	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	46196865	rs74363574	C	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.41;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	46196880	rs2279304	T	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr18	46196902	rs74915550	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr18	46284587	rs1038308	T	C	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr18	46284840	rs4556859	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr18	46343818	rs9951895	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.624;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr18	46343913	rs62103298	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.702;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr18	46383898	rs937022	T	C	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:86,126:0.59:212
chr18	46384073	rs937021	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr18	46385671	rs28541524	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr18	46385948	rs3752082	A	G	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr18	46476074	rs149563164	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr18	46476333	rs375582985	C	T	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:126,140:0.53:266
chr18	46570704	rs45588531	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr18	46576058	rs12456845	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr18	46623883	rs60818038	C	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr18	47013723	rs6417105	A	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:80,85:0.52:165
chr18	47014953	rs35737964	G	GTGT	2648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=-0.945;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:79,68:0.46:147
chr18	47015609	rs36084909	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.178;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr18	47016046	rs6507920	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr18	47088655	rs34474737	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr18	47093790	rs2000812	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	47102002	rs2276269	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	47110177	rs79592405	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr18	47113312	rs41507045	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	47116675	rs77530906	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.928;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr18	47313630	.	TAAAAAAAAAA	T,TAAA	214.79	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:6
chr18	47328930	.	C	CAAA	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.67;ReadPosRankSum=-0.140;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr18	47329386	rs113004879	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.55;ReadPosRankSum=-1.645;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	47340423	rs191949319	C	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr18	47352733	rs112174362	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-3.782;QD=3.40;ReadPosRankSum=1.661;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr18	47352742	rs11874243	T	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-1.989;QD=10.11;ReadPosRankSum=-0.440;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr18	47352754	.	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-4.428;QD=1.54;ReadPosRankSum=0.225;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,4:0.14:29
chr18	47352955	rs78657366	T	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr18	47369863	rs112905294	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr18	47376128	rs490697	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	47402280	rs657424	A	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	47405282	rs114515602	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr18	47405425	rs3841750	T	TGAG	1668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.285;QD=13.91;ReadPosRankSum=0.942;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr18	47406913	rs1217632	A	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr18	47406938	rs1217633	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr18	47433101	rs373966052	AC	A	695.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr18	47455805	.	C	CA	61	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=0.9998;HP=2;HapScore=2;MGOF=20;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=61;QD=47.0;SC=CGACGGTACACAGAGGGCTCC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=47455813;WS=47455795;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	47455923	rs2298628	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.657;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr18	47463587	rs1790797	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	47463872	rs1787519	A	G	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	47480660	rs1787299	G	A	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	47488625	rs17715416	A	G	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr18	47489589	rs68106090	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	47506874	rs16951352	G	T	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:148,153:0.51:301
chr18	47518652	rs16951370	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr18	47563299	rs1815930	T	C	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	47563429	rs58132038	G	A	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:85,121:0.59:206
chr18	47582758	.	G	A	253.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr18	47769194	rs1662895	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr18	47777012	rs1790458	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr18	47777358	rs920791	T	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr18	47902337	rs1970679	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	47906416	rs1441293	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	47906690	rs1441294	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	47906719	rs1441295	T	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	47908556	rs6507992	G	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr18	47911471	rs16951837	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr18	47911496	rs58785508	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr18	47911550	rs16951840	A	C	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr18	47911631	rs11538068	A	G	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:95,70:0.42:165
chr18	47917769	rs147664072	C	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr18	48325926	rs75558285	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr18	48326352	rs12967343	C	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr18	48326378	rs2586778	G	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr18	48345963	.	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr18	48446953	rs674210	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr18	48458662	rs649224	G	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:93,66:0.42:159
chr18	48577782	rs7229678	G	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr18	48584855	rs57847829	A	ATT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.509;QD=4.98;ReadPosRankSum=0.314;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr18	48591762	rs11875522	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr18	48593379	rs186332162	T	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.083;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr18	48723217	rs35675106	C	T	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	48723242	rs149809554	G	C	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:45,98:0.69:143
chr18	48723340	.	T	TTCCTCC	1780.73	.	AC=1;AF=0.500;AN=2;DP=157;set=Intersection	GT:AD:AF:DP	0/1:91,50:0.35:141
chr18	49867224	rs9951523	T	C	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	50432602	rs2229080	C	G	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr18	50450240	rs2276204	T	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr18	50451821	rs2298654	T	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr18	50592553	rs113735955	C	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr18	50592640	rs28683803	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.379;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr18	50683691	rs2276147	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr18	50731829	rs4497763	A	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	50923932	rs7231978	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr18	50929098	rs10612041	CAAT	C	2486.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr18	50942544	rs76454812	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr18	50976898	rs35891220	G	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr18	50994208	rs1502229	G	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr18	51053218	rs113173464	T	TCACCCCAGGC	474.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr18	51056915	rs2270953	G	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr18	51686057	rs9946304	G	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	51795847	rs3730668	G	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.956;QD=10.75;ReadPosRankSum=-1.203;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr18	51795957	rs10584411	GCGA	G	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	51796003	rs3730669	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr18	51797698	rs3218777	A	C	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:133,146:0.52:279
chr18	51806923	.	T	TGTG	2481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.588;QD=29.90;ReadPosRankSum=2.263;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,63:0.76:83
chr18	51820805	rs8305	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	51850947	rs114075116	G	A	248.31	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr18	51880586	rs141426557	AT	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.59;ReadPosRankSum=0.390;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	51880986	rs1370363	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	51889056	rs6508290	A	G	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	51892259	rs116395327	A	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.29;ReadPosRankSum=-1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	51900781	rs16958125	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.702;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr18	51900788	rs71297084	T	TTTAA	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	51904461	rs35286005	C	CTTTA	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	51904641	rs3753056	A	G	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	51904644	rs3753055	G	A	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	52265308	rs9947055	A	C	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:199,160:0.45:359
chr18	52555398	rs4343367	G	A	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	52571434	rs4801109	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	52571741	rs4801110	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	52575002	rs1944382	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	52585071	.	GACACACACAC	G,GAC	612.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=24;set=Intersection	GT:AF:DP	1/2:0.42,0.58:19
chr18	52585211	rs142691952	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr18	52608329	rs8087479	C	A	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	52609945	rs61743412	C	T	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.216;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:77,113:0.59:190
chr18	52895418	rs6567210	G	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr18	52895531	rs8766	T	C	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,75:0.46:162
chr18	52896000	rs8087569	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.85;ReadPosRankSum=-0.566;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr18	52896003	rs8087570	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.42;ReadPosRankSum=-0.765;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr18	52901607	rs41483647	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr18	52942827	rs1788027	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr18	52969873	rs73960228	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr18	53131204	rs200413459	TGTGTGA	T	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr18	53131208	.	TGA	T	129	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=3;MGOF=22;MMLQ=18;MQ=58.16;NF=2;NR=4;PP=129;QD=22.0;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.46;Source=Platypus;TC=8;TCF=2;TCR=6;TR=6;WE=53131217;WS=53131194;set=Platypus	GT:AD:AF:DP	1/0:2,6:0.75:8
chr18	53131488	rs3760600	C	A	66.41	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	53131504	rs144919408	T	A	66.41	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	53177740	rs9954890	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.217;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	53177774	rs9964328	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.41;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr18	53252388	rs599550	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	53263520	rs182953341	A	G	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:181,150:0.45:331
chr18	53302845	rs610362	C	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	53303101	rs611326	C	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	53332089	rs796742	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	53696010	rs1477440	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr18	53696180	rs2551452	C	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr18	53696212	rs34257372	ATGAG	A	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr18	53727502	rs2535724	T	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-1.168;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chr18	54281831	rs17090267	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr18	54339818	rs568078	C	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	54339977	rs566956	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	54346482	rs683248	T	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	54346510	rs597585	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	54346745	rs11452823	A	AT	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr18	54346804	rs525682	T	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	54348514	rs605067	C	T	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	54348650	rs474607	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	54353382	rs609195	A	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	54354074	rs1943016	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr18	54354076	rs5825199	T	TTC	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	54354239	rs576095	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	54359029	rs372880345	T	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.187;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr18	54359062	rs2110414	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.61;ReadPosRankSum=-1.135;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr18	54426267	rs74182159	ATTTG	A	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	54605732	rs76982245	A	C	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:78,104:0.57:182
chr18	54606452	rs28595099	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.65;ReadPosRankSum=-1.525;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	54606452	.	CTA	TTG	141	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=2;MGOF=100;MMLQ=27;MQ=58.84;NF=4;NR=0;PP=141;QD=48.6169687156;SC=TATAGACTTTCTATGGGCAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=8;TCR=1;TR=4;WE=54606462;WS=54606442;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	54606454	rs28377894	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.65;ReadPosRankSum=-1.525;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	54606734	rs8093847	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.745;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr18	54815025	rs11151997	G	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	55019963	rs34708192	TCACACACACA	T,TCACACACACACA	1842.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.410;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=0.418;QD=23.62;ReadPosRankSum=-2.418;SOR=0.997;set=HC	GT:AD:AF:DP	1/2:8,47,23:0.60,0.29:78
chr18	55021725	rs3745060	A	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.377;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:76,67:0.47:143
chr18	55024099	rs677514	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	55027334	rs1153626	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:90,110:0.55:200
chr18	55027526	rs739692	C	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr18	55143589	rs618953	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr18	55143766	rs3745074	C	T	2527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-1.571;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:167,134:0.45:301
chr18	55221648	rs536560	T	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	55226254	rs1736440	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr18	55226383	rs536765	G	C	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr18	55240455	rs577152	T	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	55253710	rs317815	G	A	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	55272968	rs4940931	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	55287739	rs388644	A	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	55288007	rs389031	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr18	55288879	rs368935	A	G	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	55288879	.	ACTGGAG	GCTGGAA,GCTGGAG	989	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=24;MQ=60.0;NF=26,65;NR=14,35;PP=562,989;QD=15.3866968716;SC=CCGAAACCCGACTGGAGCAGA;SbPval=0.54;Source=Platypus;TC=100;TCF=65;TCR=35;TR=40,100;WE=55288893;WS=55288869;set=Platypus	GT:AF:DP	0/1:0.40:100
chr18	55288885	rs112085277	G	A	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=0.725;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:103,83:0.45:186
chr18	55317676	rs222581	C	T	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	55319472	rs7226404	A	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr18	55329937	rs34396065	CA	C	52.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr18	55335412	rs317845	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr18	55335495	rs317844	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	55335786	.	T	TAAAAAAAA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.34;ReadPosRankSum=-1.104;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	55336461	rs58094309	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.467;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr18	55338656	rs317838	G	A	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr18	55352389	rs11659313	T	C	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:103,105:0.50:208
chr18	55352436	rs319459	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	55352470	rs143958246	TTTA	T	490.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr18	55362532	rs319443	T	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	55362816	rs319442	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	55364830	rs319439	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr18	55364852	rs319438	A	G	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	55397512	rs319432	T	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	55397624	rs33964473	GATA	G	5947.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	55397674	rs319433	G	C	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	55397871	rs319434	T	C	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr18	55398604	rs12606419	T	C	357.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	55398604	.	TAT	CAC	256	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=2;MGOF=62;MMLQ=27;MQ=60.0;NF=6;NR=2;PP=256;QD=38.6834843578;SC=TATATATATATATACACACAC;SbPval=0.53;Source=Platypus;TC=14;TCF=11;TCR=3;TR=8;WE=55398614;WS=55398594;set=Platypus	GT:AD:AF:DP	1/1:6,8:0.57:14
chr18	55398606	rs12606420	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	55398756	rs651867	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	55816791	rs4149601	G	A	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.248;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:121,118:0.49:239
chr18	55832896	rs564442	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=-0.328;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	55862743	rs473740	G	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	55983330	rs2288774	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr18	55983364	rs2288775	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.40;ReadPosRankSum=-0.628;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	55990401	rs73439414	C	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr18	55990580	rs77259956	G	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:94,91:0.49:185
chr18	55997929	rs144384654	CTTCT	C	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr18	56002802	rs73439430	A	G	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.222;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:65,43:0.40:108
chr18	56016636	rs140266146	T	TGG	860.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr18	56024396	rs201044327	ATT	A	1567.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.446;QD=20.10;ReadPosRankSum=-0.744;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:15,63:0.81:78
chr18	56040649	rs1943994	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	56054616	rs5825274	AT	A	373.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.734;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr18	56054651	rs5825275	GT	G	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.428;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr18	56118493	rs17669	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr18	56149099	rs7240666	T	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr18	56182174	rs7505023	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr18	56182507	rs4940399	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=1.006;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	56196451	rs7236563	C	T	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr18	56196613	rs187971105	G	A	32.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr18	56202059	rs10469211	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	56202418	rs10469212	T	C	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:114,104:0.48:218
chr18	56202982	rs3826594	A	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:98,69:0.41:167
chr18	56203411	rs3809980	G	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr18	56203447	rs3809979	A	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr18	56203891	rs3809978	G	T	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.338;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:85,55:0.39:140
chr18	56203898	rs3809977	T	G	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=1.731;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:82,53:0.39:135
chr18	56204250	rs3809976	A	C	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:144,120:0.45:264
chr18	56204387	rs67925233	ACAGTTGATGTGTCCT	A	2855.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:133,76:0.36:209
chr18	56204410	rs55910046	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:133,80:0.38:213
chr18	56204671	rs4940404	A	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr18	56204747	rs3826593	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr18	56204932	rs3809973	T	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:151,111:0.42:262
chr18	56204945	rs3809972	C	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:171,114:0.40:285
chr18	56204977	rs3809971	C	T	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:213,144:0.40:357
chr18	56204991	rs3809970	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:211,151:0.42:362
chr18	56205262	rs12103986	A	C	3349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.629;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:179,174:0.49:353
chr18	56205472	rs9962199	G	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.771;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr18	56205481	rs9962203	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.715;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr18	56205551	rs9962964	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.549;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr18	56245966	.	A	ACACACACACGCGCGCGCGCGCG	233.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr18	56245968	.	A	ACACACACGCGCGCACGCGCGCG	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.566;QD=12.05;ReadPosRankSum=-0.371;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr18	56246437	rs148879560	T	C	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:194,204:0.51:398
chr18	56246442	rs12606191	T	C	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:204,202:0.50:406
chr18	56247180	rs9958735	T	C	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	56247567	rs9956630	A	G	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	56247600	rs9944810	C	A	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	56274514	rs6566986	A	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	56279025	rs6566987	T	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	56378058	rs11334706	AT	A	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr18	56383323	rs9959997	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=1.579;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	56400547	rs57115850	T	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr18	56400826	rs28740963	T	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-1.017;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr18	56401432	rs4940746	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr18	56413121	rs4940748	G	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr18	56587967	.	CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	C,CGTGTGTGTGTGTGTGTGTGTGTGTGT	314.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=38;set=Intersection	GT:AF:DP	0/1:0.64:14
chr18	56646583	rs35743757	A	AAAAT	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr18	56703194	rs9961940	A	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	56711225	rs11152115	A	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	56711284	rs11152116	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	56807308	rs3744890	C	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr18	56807339	rs3744891	T	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr18	56819930	rs3760555	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr18	56887507	rs1062557	C	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	56887813	rs180969154	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr18	56985739	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr18	56998901	rs12959578	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	57000274	rs7238054	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr18	57000303	rs2298712	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr18	57000518	rs10714229	GT	G	298.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr18	57014704	rs10632432	A	AAACC	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.10;ReadPosRankSum=0.736;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr18	57014713	rs7234168	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-1.025;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr18	57022754	rs1127220	T	C	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:176,153:0.47:329
chr18	57026361	rs33926449	A	G	3864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.826;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:240,204:0.46:444
chr18	57103383	rs115490148	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr18	57115203	rs1893788	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	57115490	rs749999	T	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=-0.792;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr18	57115532	rs75346177	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	57133862	rs8083041	T	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	57134152	rs4940876	A	G	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	57136869	rs632899	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr18	57136902	rs663452	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr18	57136943	rs650033	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr18	57147351	rs1663548	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	57147390	rs1790508	C	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	57567699	rs78800940	G	A	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	57637560	rs112843209	T	TCA	8718.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr18	57637765	rs114758346	C	T	2533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=2.039;QD=9.38;ReadPosRankSum=2.027;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:141,129:0.48:270
chr18	58039276	rs2229616	C	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:165,111:0.40:276
chr18	58279197	.	C	CCTGAATCTCTGGAACAGTTACTTGCTGATTGCA	2196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.303;QD=14.74;ReadPosRankSum=-0.463;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:93,56:0.38:149
chr18	58283202	rs7229783	G	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr18	58287311	rs9949231	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr18	58289642	rs11388808	T	TA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-1.959;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr18	58290213	rs78397733	G	C	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:108,138:0.56:246
chr18	58290330	rs1560400	A	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr18	58291479	rs9947661	T	C	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr18	58310604	rs11659206	C	T	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	59157764	rs680530	T	C	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	59158065	rs681902	T	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	59166541	rs12964819	C	T	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	59166762	rs113925343	T	TAC,TACAC	400.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.83;QD=33.39;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,6,6:0.50,0.50:12
chr18	59170304	rs595093	C	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	59174817	rs1547956	C	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr18	59206197	rs5825446	C	CT	748.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr18	59206480	rs11875000	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr18	59217504	rs10439060	T	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr18	59713134	rs200481058	C	A	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.530;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:63,79:0.56:142
chr18	59805532	rs9959632	T	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	59894502	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.506;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr18	59942586	rs112272563	G	GT	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-2.282;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:65,33:0.34:98
chr18	59942746	.	AT	A	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.287;QD=6.22;ReadPosRankSum=1.361;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr18	59992547	rs7238731	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	60027149	rs6567271	T	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,50:0.37:135
chr18	60027171	rs6567272	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:106,57:0.35:163
chr18	60027241	rs1805034	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:83,54:0.39:137
chr18	60027361	rs9653064	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr18	60029122	rs34950264	A	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr18	60036083	rs8092336	A	G	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	60190786	.	C	CCCG	124.73	.	AC=1;AF=0.500;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;QD=31.18;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:0,4:1.00:4
chr18	60191428	rs7229802	G	A	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr18	60212013	rs143702074	ATG	A	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr18	60225865	rs72941651	G	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr18	60227939	rs146609669	TAATTA	T	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr18	60232405	rs4940561	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	60237388	rs8096750	A	G	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	60241732	rs3744926	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:156,131:0.46:287
chr18	60382871	.	G	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.339;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr18	60491364	rs34639796	CA	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=2.421;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr18	60491477	rs114953724	G	A	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=9.97;ReadPosRankSum=2.891;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:79,81:0.51:160
chr18	60505995	rs10563075	TTC	T	3545.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	60562298	rs624821	A	T	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr18	60572437	rs3217528	GT	G	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.372;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.209;QD=8.45;ReadPosRankSum=0.206;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr18	60626119	rs114946587	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr18	60630531	rs547690	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	60630691	rs114123997	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr18	61022622	rs77123659	C	G	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr18	61022634	rs1809319	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr18	61022791	rs2003149	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr18	61034175	rs427065	A	G	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	61034420	rs402348	T	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr18	61058463	.	CT	C	28	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9999;HP=17;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=28;QD=10.3333333333;SC=ACTCCCTATTCTTTTTTTTTT;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=61058471;WS=61058453;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	61067818	rs35437748	G	A	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.724;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:75,76:0.50:151
chr18	61151959	.	C	G	67	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=23;MMLQ=24;MQ=60.11;NF=1;NR=5;PP=67;QD=16.9618687579;SC=TGTGCCATTCCAGGACTCTCT;SbPval=0.91;Source=Platypus;TC=18;TCF=6;TCR=12;TR=6;WE=61151967;WS=61151949;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr18	61154148	rs7237192	C	T	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.210;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:75,97:0.56:172
chr18	61156606	rs12454742	G	C	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.732;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:63,59:0.48:122
chr18	61160287	rs2289519	T	C	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.203;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:116,96:0.45:212
chr18	61166256	rs71366963	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.439;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr18	61166267	rs373058086	TGCGC	T	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.758;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr18	61166269	rs56208842	C	T	463.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-1.966;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr18	61166273	rs12458191	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.99;ReadPosRankSum=-1.049;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr18	61166282	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.701;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr18	61170500	rs1455557	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.65;ReadPosRankSum=2.771;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr18	61170721	rs1455556	T	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,79:0.47:167
chr18	61170782	rs1455555	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,102:0.52:198
chr18	61170925	rs8093128	T	C	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	61225801	rs7244584	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr18	61226694	rs11152391	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	61226702	rs11872798	C	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-1.092;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr18	61226740	rs12103954	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr18	61226973	rs74887610	A	T	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=2.351;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:78,79:0.50:157
chr18	61228248	rs9676250	T	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	61231143	rs33927218	AAAAAT	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.97;MQRankSum=1.283;QD=5.49;ReadPosRankSum=-0.176;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr18	61231417	rs9957786	A	G	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr18	61233739	rs2077549	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	61234091	rs35623491	C	T	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.816;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:47,56:0.54:103
chr18	61234144	rs56812375	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr18	61254525	rs3216123	A	AT	585.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr18	61255723	rs12327505	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr18	61256117	rs77936810	GC	G	225.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	61261515	rs11152394	T	C	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr18	61261540	rs11152395	T	C	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	61261565	rs11152396	C	G	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	61264298	rs1020694	G	A	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr18	61264468	rs1020693	C	T	12296.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr18	61271065	rs7229459	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	61306690	rs2276203	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	61308895	rs2518061	A	G	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr18	61322995	rs1065205	T	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,99:0.46:214
chr18	61326505	rs8089032	T	A	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	61326597	rs8085479	A	C	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=44.49;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr18	61326602	rs8085482	A	G	10222.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=45.64;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr18	61326609	rs8089201	T	G	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=44.24;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	61326628	rs11370831	A	AT	6183.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=31.07;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr18	61377579	rs1395268	A	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	61377644	rs1395269	T	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	61378743	rs1506424	G	T	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	61379838	rs4940595	T	G	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr18	61387312	rs1506418	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	61387333	rs1506419	T	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	61387389	rs1506420	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	61387984	rs7239198	T	C	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	61388052	rs7239229	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	61390316	rs1395265	C	A	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr18	61390332	rs1395266	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr18	61390361	rs1395267	T	C	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	61390570	rs953695	T	G	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	61390649	rs953696	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	61391228	rs2089318	T	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	61391323	rs147160513	CTCT	C	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.54;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	61391449	rs144614464	C	CTCTTCT	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.21;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	61391505	rs144622175	CTCT	C	2743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.33;MQRankSum=0.860;QD=35.18;ReadPosRankSum=-0.096;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:7,71:0.91:78
chr18	61391697	rs12326861	A	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	61393442	rs9965604	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	61393644	rs1893563	T	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	61394300	rs8097334	C	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	61394403	rs8098025	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	61394522	rs6567386	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	61463784	rs1701648	G	T	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	61465810	rs1720858	A	G	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	61465822	rs113041735	A	AT	1962.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr18	61466024	rs1720857	C	T	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	61466058	rs1720856	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	61468085	rs2658459	T	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	61468306	rs2689399	G	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	61471887	rs1625353	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	61558656	rs6095	C	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	61558878	rs6093	C	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=0.263;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr18	61558882	rs6094	T	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.96;ReadPosRankSum=-0.451;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr18	61562371	rs7233370	T	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr18	61562391	rs7229383	A	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr18	61562608	rs6096	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr18	61562690	rs3942631	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	61564394	rs6098	A	G	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.592;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:115,118:0.51:233
chr18	61564513	rs2278180	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr18	61564532	rs2278179	A	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr18	61564589	rs2278178	G	A	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	61569543	rs1863583	T	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	61569559	rs17072043	C	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	61569819	rs200726702	TTTAAGTTTCTGGGGC	T	2181.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr18	61569849	rs3217292	GTGAGA	G	3004.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	61570470	rs6102	T	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.659;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr18	61570503	rs6103	C	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr18	61570529	rs6104	C	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr18	61570551	rs6097	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr18	61575232	rs1006961	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.323;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr18	61575434	rs8086898	G	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr18	61582751	rs17072097	T	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr18	61582867	rs8097425	A	G	2663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=0.141;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,105:0.99:106
chr18	61583073	rs17072102	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr18	61584642	rs17072109	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.928;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr18	61584817	rs17072114	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr18	61585145	rs724557	A	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr18	61585260	rs724558	T	C	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=1.127;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:58,69:0.54:127
chr18	61587053	rs17072146	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr18	61587067	rs9967382	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	61587241	rs17072152	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr18	61587289	rs620535	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr18	61600384	rs963075	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr18	61620766	rs9945924	G	A	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	61647069	rs1944270	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:126,75:0.37:201
chr18	61649170	rs12605976	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	61653570	rs73484274	C	G	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-1.302;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:115,89:0.44:204
chr18	61654297	rs3169983	A	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:141,117:0.45:258
chr18	61654587	rs143838221	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.503;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr18	61747500	rs138973130	T	A	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.604;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:111,138:0.55:249
chr18	61765810	rs116807783	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-1.599;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr18	61766039	rs2613658	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr18	63430340	rs2276190	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=2.329;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr18	63430344	rs2276191	T	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=2.723;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr18	63477317	.	G	GA	100.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.000;QD=5.60;ReadPosRankSum=-0.857;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr18	63489243	rs28722899	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr18	63511176	rs2306675	T	C	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,104:0.49:212
chr18	63527083	rs8091515	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=0.595;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr18	63527083	.	CGA	TGT	171	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=21;MQ=60.0;NF=2;NR=5;PP=171;QD=32.066839266;SC=ATATTGTTACCGATAGAGGCA;SbPval=0.73;Source=Platypus;TC=27;TCF=9;TCR=18;TR=7;WE=63527093;WS=63527073;set=Platypus	GT:AD:AF:DP	0/1:20,7:0.26:27
chr18	63527085	rs8091386	A	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=0.807;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr18	64197236	rs34892363	CAT	C	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr18	64197289	rs11873628	C	T	130.41	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr18	64211562	rs35635169	TCA	T	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr18	64748928	rs113465311	CT	C	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:99,76:0.43:175
chr18	65178103	.	G	GCA	33	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=33;QD=21.0;SC=ATACACGCGTGCACACACACA;SbPval=0.56;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=65178111;WS=65178093;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr18	65179327	rs142355970	T	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:261,128:0.33:389
chr18	65179829	rs2279269	G	A	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:163,80:0.33:243
chr18	66344127	rs309204	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr18	66348127	rs309208	T	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.764;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:70,28:0.29:98
chr18	66350264	rs8083026	G	A	3153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=1.234;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:80,143:0.64:223
chr18	66358403	rs309228	G	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr18	66365129	rs433550	T	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	66367821	rs141156149	A	AATATAT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.79;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	66377166	rs111306573	CA	C	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr18	66377171	rs77518690	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr18	66377209	rs17079606	A	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr18	66377408	rs113906830	C	CA	1240.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr18	66378705	rs9967380	G	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr18	66504078	rs61998185	C	T	4708.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:132,228:0.63:360
chr18	66509199	rs139455395	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.500;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr18	66509224	rs113999940	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-1.490;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr18	66509244	rs144968094	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.029;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr18	66511027	rs9962597	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	66511207	rs33926572	TA	T	403.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	66513256	rs8088575	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	66513471	rs1954878	C	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	66513662	rs1977942	T	C	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr18	66513749	rs1970675	T	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr18	66513769	rs1539895	A	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	66513840	rs1970674	C	A	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	66513846	rs1970673	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-0.956;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr18	66542006	rs745894	G	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr18	66542108	rs2004027	T	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	66564474	rs146661486	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr18	66678131	rs7234663	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	66678453	rs930164	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	67266877	rs6566432	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	67345034	rs8099030	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	67365585	rs4581806	A	G	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	67365668	rs4426448	A	G	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr18	67508495	rs76231229	C	T	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr18	67688110	rs150783273	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr18	67809632	rs78051412	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.089;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr18	67818046	rs12604751	C	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	67860412	rs35759421	CA	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=7.458;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.713;QD=9.59;ReadPosRankSum=2.031;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr18	67860719	rs283250	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	67863850	rs74941514	T	TCTC	5265.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	67871228	rs283254	G	A	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	67872778	rs283230	C	T	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	67873001	rs73966851	G	A	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	70416119	rs11872857	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	70416367	rs35742923	C	CA	1429.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	70417396	rs922999	C	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	70423192	rs7244244	T	C	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	70520686	rs111871022	G	GA	454.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	70531961	rs41499247	T	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	70532840	rs10164255	T	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	70532977	rs10163845	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	71920966	rs1790871	T	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	71928150	rs7238987	C	T	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr18	71930734	rs2032262	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=26.19;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	71930758	rs2032263	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=26.19;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	71930834	rs144732931	C	CTG	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	71930844	rs2032264	C	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	71958903	rs58450389	G	A	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	71987895	rs28701630	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	72021717	rs12606060	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	72021836	rs148920473	CA	C	2541.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	72103782	rs2278154	T	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	72109174	rs1559805	C	A	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	72113730	rs3861310	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	72114455	rs8087020	C	T	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr18	72180723	rs2241511	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	72185688	rs735076	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	72186059	rs733062	G	A	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	72186175	rs5826329	T	TC	7226.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=30.62;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr18	72201918	rs11151964	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	72223591	rs10663835	G	GTGC	6546.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:8,157:0.95:165
chr18	72238283	rs4892244	A	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	72247278	rs4892247	C	T	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	72264397	rs7505285	A	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	72264406	rs7505289	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	72264473	rs7505334	C	T	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	72343008	rs7243081	T	C	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	72592979	rs28506470	G	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	72593118	rs2628126	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	72776121	rs3744913	G	A	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr18	73130653	rs3214645	G	GT	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	73130705	rs33995140	AT	A	2360.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	74090931	rs690353	C	T	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	74090957	rs56087742	CG	C	3550.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	74091718	rs17059302	G	A	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr18	74092366	rs12970367	G	A	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	74208485	rs3841258	CG	C	2700.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=29.04;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	74591992	rs5826483	G	GT	408.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.490;QD=13.63;ReadPosRankSum=-0.458;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr18	74611127	rs608433	A	G	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	74648536	rs630229	G	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	74680369	rs470774	C	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	74701936	rs76912958	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	74702113	rs71172389	AT	A	294.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.349;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr18	74721697	rs3752070	G	A	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	74778506	rs77084065	G	T	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr18	74779614	rs4890887	C	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	74779866	rs4890888	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	74962447	rs13306375	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	74962556	.	C	T	3686.77	.	AC=2;AF=1.00;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	74962645	rs5374	T	C	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr18	74962810	rs5375	G	T	11560.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr18	74963227	rs75393275	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	74980809	rs5376	G	A	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	76753588	rs7240860	A	G	8533.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr18	76753768	rs2447437	C	G	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr18	76754466	rs2472644	C	T	6549.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr18	76829509	rs370572724	G	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	76933856	rs28419454	T	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	77063557	rs116617106	G	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	77089430	.	G	GTTTT	184.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=23.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	77097226	rs111550287	C	A	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr18	77097479	rs115785061	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	77105710	rs114825096	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	77107596	rs185466312	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	77135247	rs150051202	G	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	77137202	rs1110784	A	G	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr18	77156103	rs71359461	G	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77156449	rs58346397	G	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	77160235	rs56376587	A	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	77160256	.	G	GGGGGGC	457.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	77160367	.	C	CGCCCCG	4382.73	.	AC=2;AF=1.00;AN=2;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=45.65;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	77209015	rs2278801	A	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	77210902	rs680802	C	T	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	77211175	rs2290154	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	77211595	rs9965861	T	C	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	77211764	rs15350	T	C	4810.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=0.227;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:1,193:0.99:194
chr18	77221207	rs2304738	C	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	77221264	rs2304739	C	T	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,157:0.99:159
chr18	77221278	rs56112793	G	A	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	77221420	.	C	CTGGGGTCTGCTGGAGCCACTGCGGGTCCCCAGAGCCTGGGAGGG	2005.73	.	AC=2;AF=1.00;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	77227473	rs25658	G	A	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	77227476	rs25656	A	G	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	77287385	rs451691	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77402295	rs55831729	AC	A	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	77402305	rs56014953	C	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	77420703	rs868678	C	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	77439532	rs3826573	T	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	77440128	rs17855830	T	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	77489169	rs9956086	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	77513721	rs626169	T	C	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr18	77659495	rs114148894	T	C	8027.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr18	77917479	rs62101564	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.98;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77921331	rs33942860	CAG	C	8492.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr18	77926795	rs11275834	T	TACAAATAAC	3752.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	77927028	rs1879105	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	287786	rs111230410	C	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr19	287943	.	CCCCCATCAGGCCCCCAGGGTAAAGCTGGCCCCA	C	268	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=6;HapScore=1;MGOF=40;MMLQ=26;MQ=60.34;NF=8;NR=17;PP=268;QD=11.72;SC=CTGTGCCACCCCCCCATCAGG;SbPval=0.58;Source=Platypus;TC=31;TCF=10;TCR=21;TR=25;WE=287983;WS=287933;set=Platypus	GT:AD:AF:DP	0/1:6,25:0.81:31
chr19	287970	.	G	GT	1934.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr19	290947	rs8111051	C	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.80;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	307037	rs72982402	C	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	311787	rs111820777	C	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr19	312026	rs60667274	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr19	312141	.	AGT	GGC	197	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=22;MQ=59.94;NF=16;NR=6;PP=197;QD=11.3849034028;SC=AACGGTCAGCAGTGCCCAGGG;SbPval=0.77;Source=Platypus;TC=74;TCF=49;TCR=25;TR=22;WE=312151;WS=312131;set=Platypus	GT:AD:AF:DP	0/1:52,22:0.30:74
chr19	312179	.	A	G	738	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=20;MQ=59.97;NF=29;NR=25;PP=738;QD=14.3105780101;SC=GAAGGCCCAGACCGCTGCTCA;SbPval=0.5;Source=Platypus;TC=127;TCF=70;TCR=57;TR=54;WE=312187;WS=312169;set=Platypus	GT:AD:AF:DP	0/1:73,54:0.43:127
chr19	312311	rs60199290	G	C	3098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-2.607;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:115,87:0.43:202
chr19	312311	.	GCA	CCG	1609	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=16;NR=30;PP=1609;QD=36.1406059753;SC=TGGGCTCAGCGCAGGAGCCGA;SbPval=0.6;Source=Platypus;TC=103;TCF=37;TCR=66;TR=46;WE=312321;WS=312301;set=Platypus	GT:AD:AF:DP	1/0:57,46:0.45:103
chr19	312313	rs58749922	A	G	3098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=-2.209;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:113,80:0.41:193
chr19	313633	rs12104349	G	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,99:0.54:185
chr19	325514	rs73916894	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	326481	rs4897949	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr19	327182	rs7256086	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.815;QD=3.06;ReadPosRankSum=0.211;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr19	327260	.	T	TA	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.336;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	327323	rs7250846	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	327821	rs7257040	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr19	327998	rs2305113	G	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr19	328028	rs57488274	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr19	334474	rs11084956	T	G	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:222,205:0.48:427
chr19	335946	rs3816322	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	336279	rs11879189	T	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	366986	rs13382143	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	371369	rs372771292	GGT	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.475;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr19	371396	rs644644	G	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.976;QD=11.22;ReadPosRankSum=1.386;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	372551	rs652081	A	G	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.230;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:49,49:0.50:98
chr19	373618	rs3214576	GC	G	1648.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr19	374453	rs3815960	T	C	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr19	374492	rs10410345	G	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	375779	rs61745664	A	G	3069.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:182,162:0.47:344
chr19	407900	rs10411998	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	422512	rs145753543	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr19	422543	rs2287958	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	422555	rs2287957	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	425290	rs73916977	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	430613	rs115028205	G	A	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr19	434854	rs61745866	G	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:120,159:0.57:279
chr19	436742	rs148626479	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr19	440817	rs59355917	T	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr19	441069	rs78652217	G	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	441100	rs76708153	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.587;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	460515	.	TG	T	167.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	464310	rs34551779	A	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	467664	rs79399119	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr19	472218	rs73503325	C	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	474588	rs12610594	A	G	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:137,104:0.43:241
chr19	474607	rs12610013	C	G	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:124,98:0.44:222
chr19	496532	rs78668504	G	A	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr19	498212	rs12461640	A	C	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	498524	rs2302217	A	G	8161.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=-0.520;SOR=0.331;set=HC	GT:AD:AF:DP	1/1:1,329:1.00:330
chr19	498973	rs73505423	G	A	4743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.157;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:254,239:0.48:493
chr19	499822	rs57175451	C	T	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-1.025;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:59,66:0.53:125
chr19	500013	.	C	G	875.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr19	500359	rs6510810	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	501737	.	C	CAGGAG	576.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-2.000;QD=5.49;ReadPosRankSum=3.279;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:74,31:0.30:105
chr19	501738	rs1063736	C	A,CCTCCCGACACCACCTCCCA	3365.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.31;QD=44.29;SOR=1.519;set=HC	GT:AD:AF:DP	1/2:0,45,31:0.59,0.41:76
chr19	501743	rs1140822	T	C	11767.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=40.44;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	504830	rs7246543	C	G	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:103,131:0.56:234
chr19	505071	rs1140823	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	507450	rs7246920	G	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	536068	.	G	GTCCTCGTCCTTCCGGGATCCGGGGCGCTGGGAGCCTCACA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=1.759;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	536107	rs10406729	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr19	537171	rs16990571	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr19	544140	rs892209	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr19	547224	rs4919846	A	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	547491	rs2070795	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	548865	rs12972174	C	T	503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.565;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=-0.766;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr19	549595	rs1599883	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	549678	rs1599882	A	G	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	578239	rs2283571	C	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	579010	rs7253615	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	579022	rs374000063	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr19	579035	rs2283572	C	T	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr19	580163	rs5826703	GA	G	1208.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	580268	rs2108832	G	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:127,83:0.40:210
chr19	580333	rs11879069	G	A	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:161,116:0.42:277
chr19	580665	rs4682	T	C	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.236;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:156,147:0.49:303
chr19	580793	rs10416339	A	C	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	580810	rs10422916	T	C	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=46.21;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	580810	.	TG	CA,CG	542	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=26;MQ=59.15;NF=7,22;NR=20,46;PP=430,542;QD=17.9062175875;SC=CTGGGGGTCCTGGACCCAGCC;SbPval=0.77;Source=Platypus;TC=69;TCF=22;TCR=47;TR=27,68;WE=580819;WS=580800;set=Platypus	GT:AF:DP	0/1:0.39:69
chr19	580811	rs11879178	G	A	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.175;QD=9.13;ReadPosRankSum=2.032;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:60,42:0.41:102
chr19	580887	rs28992478	C	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	581190	rs149750330	TCCCGGACTCAGCCC	T	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-1.092;QD=16.94;ReadPosRankSum=0.828;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr19	581633	rs3764937	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-1.094;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	582253	rs4919862	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	582292	rs202135216	C	T	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.074;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:109,110:0.50:219
chr19	582468	rs2074962	A	G	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	582505	rs2072309	G	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,79:0.55:143
chr19	582693	rs2072310	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	582775	rs8637	A	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr19	582927	rs8259	T	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.180;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr19	603513	rs4919815	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr19	604022	rs10409268	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	605171	rs12981860	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	605233	rs116723556	C	T	137.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.25;ReadPosRankSum=0.489;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	607941	rs3752159	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr19	607984	rs3752158	G	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr19	613560	rs149420100	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-1.568;QD=10.88;ReadPosRankSum=0.636;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr19	613572	.	CGGGGCCGGGGATGGGGATGGGGATGGGGAT	C	648.73	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;QD=43.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	613898	rs1054786	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	617195	rs11670098	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.235;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	617205	rs2072122	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=34.08;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	617963	rs41546612	T	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr19	619021	rs14155	G	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	619574	rs10853990	T	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-1.100;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr19	619772	rs11669381	G	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	620005	rs151235528	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr19	621020	.	T	C	246	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=6;HapScore=2;MGOF=17;MMLQ=18;MQ=58.15;NF=11;NR=7;PP=246;QD=15.5984006971;SC=GGCGCGGGGGTGCCGGGAGGG;SbPval=0.58;Source=Platypus;TC=18;TCF=11;TCR=7;TR=18;WE=621028;WS=621010;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	621712	rs2238547	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	622000	rs2238548	C	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.85;ReadPosRankSum=-0.887;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	622336	rs2238549	T	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr19	623080	rs41563114	A	AT	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.259;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	623546	rs41553913	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr19	625198	rs1056766	A	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	629503	rs2283577	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr19	633381	rs11669858	A	G	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:83,108:0.57:191
chr19	633529	.	G	GGCGCCGCCGCCGCCGCCGCC	1853.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr19	641129	rs11572860	G	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:49,76:0.61:125
chr19	643103	.	GG	AT	340	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=2;HapScore=2;MGOF=125;MMLQ=27;MQ=60.0;NF=9;NR=1;PP=340;QD=39.3467874862;SC=CGTCGTGGTCGGGAGGGGACT;SbPval=0.52;Source=Platypus;TC=14;TCF=13;TCR=1;TR=10;WE=643112;WS=643094;set=Platypus	GT:AD:AF:DP	1/0:4,10:0.71:14
chr19	643104	.	G	GGAGGGGACTCGTGGTCTGGGGCAGGGGGGGCTCCTCGTGTCTGTCGTGGTCAT	888.73	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=222.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	646854	rs72974181	C	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr19	646891	rs10403235	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr19	646900	rs7249518	A	G	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.564;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:63,74:0.54:137
chr19	647039	rs2074460	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	648823	rs10418071	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.034;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	652147	rs73503983	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	652206	rs8102953	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	652739	rs12973146	C	G	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	652948	rs10153505	T	G	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr19	663131	rs192291082	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	680378	rs7246311	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=1.067;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	686791	rs10439152	C	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	687142	rs8102982	G	A	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	691909	rs4375794	T	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:105,93:0.47:198
chr19	695002	rs78743093	G	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	695466	rs72978241	T	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:98,74:0.43:172
chr19	725939	rs3787017	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	726200	rs10408458	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,69:0.56:123
chr19	727225	.	C	CAACCCT	4683.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=3.378;MLEAC=2;MLEAF=1.000;MQ=59.59;MQRankSum=-0.111;QD=42.20;ReadPosRankSum=-0.781;SOR=0.519;set=HC	GT:AD:AF:DP	1/1:1,110:0.99:111
chr19	727237	.	C	CGACCCT	4685.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=3.409;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=-0.110;QD=41.10;ReadPosRankSum=-0.486;SOR=0.541;set=HC	GT:AD:AF:DP	1/1:1,113:0.99:114
chr19	731055	rs10405821	G	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	731077	rs10405836	GG	CT	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	731144	rs1050457	A	G	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	736153	rs143675835	TGGGGCG	T	1635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.965;QD=20.19;ReadPosRankSum=-0.618;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr19	740272	rs7245884	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	740560	rs10419493	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	746206	rs2384776	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	757037	rs35093527	T	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chr19	757399	rs3746172	A	C	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:77,87:0.53:164
chr19	757412	rs3746173	A	G	3097.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,81:0.54:151
chr19	757606	rs3746174	T	C	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:120,169:0.58:289
chr19	757752	rs35384259	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr19	763508	rs8107847	A	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:121,81:0.40:202
chr19	797517	rs10414379	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr19	799342	rs8100561	G	C	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,59:0.43:136
chr19	803685	rs145434216	G	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr19	803697	rs351983	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr19	804013	rs351982	A	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr19	804079	rs351981	T	C	3263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.491;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:171,164:0.49:335
chr19	804456	rs351980	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr19	806634	rs351977	G	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-0.381;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr19	806673	rs351976	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	808824	rs62131353	C	T	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:88,96:0.52:184
chr19	808920	rs62131354	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	810445	rs10426392	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.264;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	813220	rs351994	T	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	813822	rs369603002	G	C	2820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=2.004;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:108,81:0.43:189
chr19	813841	rs351993	G	A	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=6.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=0.406;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:77,72:0.48:149
chr19	814287	rs351989	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr19	815086	rs351988	A	G	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	815150	rs113219986	A	C	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.528;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:175,181:0.51:356
chr19	815173	rs351987	T	G	4452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.740;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:216,225:0.51:441
chr19	827975	rs649411	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.016;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:48,30:0.38:78
chr19	828032	rs151053279	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr19	828105	rs10420530	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	828399	rs201991986	G	A	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr19	829723	rs678976	A	G	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:249,253:0.50:502
chr19	830621	rs653847	A	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:76,77:0.50:153
chr19	830854	rs595844	T	C	19770.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,749:1.00:749
chr19	831040	rs112932668	G	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr19	831811	rs588442	C	T	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:115,66:0.36:181
chr19	841100	rs62132296	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr19	843454	rs7257699	C	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr19	843692	rs2301879	A	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr19	844020	rs351111	G	A	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr19	844042	rs73492537	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:55,84:0.60:139
chr19	844077	rs351112	A	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr19	846041	rs629631	C	T	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	852797	rs17216621	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	860852	rs1629038	G	C	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	861102	rs1626564	C	A	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	861593	rs1683563	C	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	862024	rs1683561	C	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	868031	rs113862234	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	868115	rs13090	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.405;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr19	868329	rs73492565	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr19	868421	rs35040519	G	A	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.122;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:84,73:0.46:157
chr19	868551	rs1631848	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr19	869037	rs1683591	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.85;ReadPosRankSum=0.272;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	871135	rs1683569	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr19	871447	rs1683570	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr19	871724	rs73492568	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	871987	rs78047294	G	A	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.303;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:138,111:0.45:249
chr19	873743	rs1651888	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	875389	rs11546307	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr19	876910	rs112523035	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	884782	rs2965294	C	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr19	885818	rs1060442	A	G	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:140,141:0.50:281
chr19	886088	rs11492	C	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:96,116:0.55:212
chr19	886257	rs2930900	A	G	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.742;QD=25.39;ReadPosRankSum=1.568;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,31:0.67:46
chr19	886269	rs35223165	AAC	A	1062.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.734;QD=25.92;ReadPosRankSum=1.950;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr19	889821	rs11879886	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-2.223;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	890073	rs11878621	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	890092	rs112050406	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	890099	rs113332652	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=-0.419;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	890295	rs73505588	G	A	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=1.153;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:82,75:0.48:157
chr19	890310	rs76277763	A	G	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=0.764;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:73,67:0.48:140
chr19	890881	rs73505593	T	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-1.465;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	891119	rs77924290	G	A	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:217,205:0.49:422
chr19	891156	rs73505595	G	T	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:145,134:0.48:279
chr19	897571	rs3746149	G	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr19	899978	rs2306718	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:79,26:0.25:105
chr19	913048	rs1683587	G	C	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	913050	.	C	G	470.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=1.084;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	913051	rs1623302	C	G	430.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-0.197;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	917380	rs3810423	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	917526	rs10407968	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	918632	rs142810073	C	T	3408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.302;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:169,172:0.50:341
chr19	920170	rs350131	G	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	920252	rs73507529	C	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	920440	.	C	T	4260.77	.	AC=1;AF=0.500;AN=2;DP=462;set=Intersection	GT:AD:AF:DP	0/1:234,222:0.49:456
chr19	920642	rs350132	T	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	929543	rs3746144	C	T	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr19	929741	rs34967265	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	929753	rs1799595	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	932340	rs732140	G	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.836;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	932377	rs732139	C	T	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.044;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr19	960187	rs1637993	G	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	960266	rs1683584	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr19	964483	rs76801073	A	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	965043	rs12608658	T	C	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	966458	rs71335324	CA	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.37;ReadPosRankSum=0.271;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	966693	rs6510986	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr19	968284	rs111672925	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	968318	rs8105235	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	968345	rs7251219	CA	TG	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.99;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	968551	rs116347167	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=0.049;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	971933	rs1051504	A	G	4857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;MQRankSum=-0.123;QD=31.96;ReadPosRankSum=-0.040;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr19	971949	.	GG	AG	1189	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=56;MMLQ=24;MQ=59.19;NF=29,4;NR=29,22;PP=948,1189;QD=16.9443312508;SC=CGGCGGCGGCGGCAGCAGCAG;SbPval=0.53;Source=Platypus;TC=107;TCF=53;TCR=54;TR=58,26;WE=971957;WS=971939;set=Platypus	GT:AD:AF:DP	0/1:49,58:0.54:107
chr19	971949	.	GG	GGCAG	1189	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=56;MMLQ=24;MQ=59.19;NF=29,4;NR=29,22;PP=948,1189;QD=16.9443312508;SC=CGGCGGCGGCGGCAGCAGCAG;SbPval=0.53;Source=Platypus;TC=107;TCF=53;TCR=54;TR=58,26;WE=971957;WS=971939;set=Platypus	GT:AD:AF:DP	0/1:41,26:0.39:67
chr19	971949	rs1051505	G	A,GGCA	5215.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.73;MQRankSum=-0.126;QD=36.22;ReadPosRankSum=-1.358;SOR=0.842;set=HC	GT:AD:AF:DP	1/2:2,57,85:0.40,0.59:144
chr19	984218	rs8112598	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	984231	rs34402804	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	984533	rs2301810	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr19	984554	rs4806884	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr19	984578	rs2301811	T	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	985815	rs2074573	T	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:107,110:0.51:217
chr19	985997	rs2074574	C	G	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	990185	rs10409367	G	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr19	990217	rs57658837	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:95,101:0.52:196
chr19	990281	rs2158367	G	A	11098.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr19	990394	rs2240148	T	C	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:147,144:0.49:291
chr19	990819	rs2240149	G	A	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:152,115:0.43:267
chr19	991063	rs2240150	A	C	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:112,88:0.44:200
chr19	991129	rs11538683	G	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr19	991196	rs60416441	CGTCCCAG	CCCCAG,C	9487.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=217;set=Intersection	GT:AF:DP	1/1:1.00:210
chr19	991199	rs201372013	CCCAGG	C	9487.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	991204	.	G	C	2437	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=25;MQ=59.94;NF=67;NR=59;PP=2437;QD=19.6172318456;SC=CACGTCCCAGGTGACCCCTGT;SbPval=0.6;Source=Platypus;TC=142;TCF=73;TCR=69;TR=126;WE=991212;WS=991186;set=Platypus	GT:AD:AF:DP	1/1:16,126:0.89:142
chr19	991374	rs77430782	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr19	991873	rs71335284	G	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	991892	rs71335285	T	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr19	991968	rs1127043	T	C	3160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.040;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.878;QD=11.45;ReadPosRankSum=-0.276;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:119,157:0.57:276
chr19	1000420	rs112743753	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr19	1000568	rs112236900	C	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	1000717	rs139242998	C	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.138;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	1003439	rs55646937	G	A	2820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.411;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:126,142:0.53:268
chr19	1004710	rs4807399	C	T	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:178,174:0.49:352
chr19	1004740	rs2240157	T	C	12785.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr19	1008358	rs10403909	A	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	1009485	rs10401245	C	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.971;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	1009585	rs10401454	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr19	1010406	rs62131162	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	1010691	rs2240159	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	1010973	rs8100391	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	1011338	rs34750262	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr19	1011823	rs2240161	A	G	7913.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:4,294:0.99:298
chr19	1012120	rs7145	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:136,136:0.50:272
chr19	1012379	rs2240162	C	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.169;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	1012379	.	CGT	GGC	296	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=5;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=9;NR=1;PP=296;QD=34.9467874862;SC=CACAGCCCCCCGTCCCGCACC;SbPval=0.88;Source=Platypus;TC=30;TCF=24;TCR=6;TR=10;WE=1012389;WS=1012369;set=Platypus	GT:AD:AF:DP	0/1:20,10:0.33:30
chr19	1012381	rs2240163	T	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.044;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	1012440	rs11672715	A	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr19	1012611	rs970100	A	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:113,81:0.42:194
chr19	1012639	rs62131163	A	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr19	1013148	rs3815170	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr19	1014377	rs1058506	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,67:0.46:147
chr19	1014398	rs7146	A	G	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	1014537	.	ACGTGATGGGG	A	1107	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=2;MGOF=37;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=1107;QD=281.0;SC=CCAAGGGCCTACGTGATGGGG;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4;WE=1014554;WS=1014527;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr19	1020673	rs1005504	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1031212	rs7247087	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	1031329	rs56707950	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-1.496;QD=8.98;ReadPosRankSum=-0.434;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	1031338	.	G	GGGGGGGA	396.74	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.75;QD=39.67;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1031340	rs12978059	C	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.35;QD=45.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1032369	rs10401325	C	T	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	1032702	rs4315451	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr19	1032756	rs55784632	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.804;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr19	1032871	rs4630683	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	1036018	rs930232	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr19	1036314	rs112340731	A	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr19	1036456	rs1064410	C	G	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:117,104:0.47:221
chr19	1036468	rs1064411	A	G	4260.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:146,119:0.45:265
chr19	1036552	rs2304262	T	C	26529.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=33.75;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,786:1.00:786
chr19	1036575	rs2304260	G	A	7553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.274;QD=8.25;ReadPosRankSum=-0.612;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:516,400:0.44:916
chr19	1036631	rs11672916	T	C	9624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=1173;ExcessHet=3.0103;FS=9.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.215;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:631,520:0.45:1151
chr19	1036691	rs11670349	C	T	14189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=10.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=1.372;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:468,402:0.46:870
chr19	1036704	rs11670373	C	T	13266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=8.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=2.098;SOR=1.223;set=HC	GT:AD:AF:DP	0/1:393,344:0.47:737
chr19	1036718	rs11667191	G	A	10907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=1.661;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:306,281:0.48:587
chr19	1036793	rs11672975	T	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr19	1037640	.	C	T	970	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=3;MGOF=218;MMLQ=20;MQ=48.59;NF=3;NR=4;PP=970;QD=143.53874465;SC=ATGACGGCTCCCGGGACCCGG;SbPval=0.39;Source=Platypus;TC=18;TCF=10;TCR=8;TR=7;WE=1037653;WS=1037630;set=Platypus	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	1037645	.	AC	A	978	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=3;MGOF=218;MMLQ=24;MQ=47.99;NF=2;NR=4;PP=978;QD=167.5;SC=GGCTCCCGGGACCCGGCGGCA;SbPval=0.75;Source=Platypus;TC=15;TCF=6;TCR=9;TR=6;WE=1037653;WS=1037630;set=Platypus	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	1037715	rs200177867	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-4.970;QD=1.17;ReadPosRankSum=-1.302;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr19	1037716	rs201532581	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-5.148;QD=1.10;ReadPosRankSum=-1.013;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:43,5:0.10:48
chr19	1037718	rs199741851	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-5.148;QD=1.10;ReadPosRankSum=-1.115;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:43,5:0.10:48
chr19	1037731	.	C	T	1672	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=4;HapScore=4;MGOF=140;MMLQ=27;MQ=52.71;NF=5;NR=9;PP=1672;QD=121.912229468;SC=ACACGCAGGGCGCCAACCAGA;SbPval=0.84;Source=Platypus;TC=38;TCF=18;TCR=20;TR=14;WE=1037739;WS=1037705;set=Platypus	GT:AD:AF:DP	1/0:24,14:0.37:38
chr19	1037828	rs75602230	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.179;QD=0.89;ReadPosRankSum=-1.853;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,4:0.10:39
chr19	1037833	rs80286396	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.179;QD=0.89;ReadPosRankSum=-2.039;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,4:0.10:39
chr19	1037932	rs3848639	G	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	1043638	rs3752231	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr19	1043936	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-0.000;QD=2.32;ReadPosRankSum=-0.564;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	1044753	rs3764648	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	1045373	rs73505207	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	1049012	rs4147912	A	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.234;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	1049490	.	C	CT	1442	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=6;HapScore=1;MGOF=40;MMLQ=27;MQ=57.63;NF=0;NR=31;PP=1442;QD=47.1935483871;SC=ACCCCGTGAGCCCCCCCACCA;SbPval=1.0;Source=Platypus;TC=32;TCF=0;TCR=32;TR=31;WE=1049499;WS=1049480;set=Platypus	GT:AD:AF:DP	1/1:1,31:0.97:32
chr19	1049491	.	C	G	864	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=6;HapScore=1;MGOF=40;MMLQ=28;MQ=56.96;NF=2;NR=31;PP=864;QD=27.2354912893;SC=CCCCGTGAGCCCCCCCACCAC;SbPval=0.59;Source=Platypus;TC=33;TCF=2;TCR=31;TR=33;WE=1049499;WS=1049480;set=Platypus	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1049510	.	C	T	615	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=3;HapScore=1;MGOF=84;MMLQ=27;MQ=56.84;NF=1;NR=24;PP=615;QD=25.9908485019;SC=ACTCCCTCCCCGTGAGCCCCC;SbPval=0.63;Source=Platypus;TC=25;TCF=1;TCR=24;TR=25;WE=1049518;WS=1049500;set=Platypus	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	1050781	.	AAAT	A,AAATAAT	360.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=14;set=Intersection	GT:AF:DP	1/2:0.64,0.36:11
chr19	1051137	rs9282562	CTG	C	5063.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:96,130:0.58:226
chr19	1051214	rs3752240	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr19	1051751	rs3764651	A	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	1051933	rs56709116	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr19	1052005	rs3764652	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,77:0.44:176
chr19	1052086	rs61576791	G	A	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:131,133:0.50:264
chr19	1052195	rs59366698	G	A	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:155,155:0.50:310
chr19	1053299	rs3829687	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	1053677	rs3752242	G	A	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.500;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:57,50:0.47:107
chr19	1053839	rs111483435	C	T	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:201,172:0.46:373
chr19	1054060	rs3752243	A	G	12194.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr19	1055191	rs3745842	G	A	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:163,106:0.39:269
chr19	1056018	rs3833881	GC	G	6735.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr19	1056065	rs881768	A	G	5551.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=-0.497;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:1,215:1.00:216
chr19	1056227	rs111322482	T	C	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,107:0.52:205
chr19	1056421	rs113711363	G	A	7496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.069;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:441,388:0.47:829
chr19	1056492	rs3752246	G	C	13889.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr19	1057776	rs113768208	G	GA	137.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.426;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	1058126	rs79335712	G	A	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:138,167:0.55:305
chr19	1059004	rs2279796	A	G	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	1061698	rs11420923	C	CA	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=1.612;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr19	1064193	rs4147930	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	1065018	rs4147934	G	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr19	1065197	rs4147936	G	C	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	1066256	rs4147938	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.18;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	1068734	rs3764653	T	C	10956.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	1068738	rs1801284	G	A	10759.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	1071312	rs4807506	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	1073409	rs2074441	C	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	1074000	rs2074442	A	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	1074064	rs12610818	C	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	1074252	rs11084881	T	G	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	1077701	rs8105082	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr19	1077985	rs7251797	A	G	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	1079727	rs143010365	G	T	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-1.028;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:161,141:0.47:302
chr19	1080189	rs2074453	G	C	6378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.381;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:310,322:0.51:632
chr19	1080311	rs2074454	G	C	14948.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr19	1081120	rs8113708	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	1081617	rs10404947	A	G	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	1085509	.	T	TCCATCTCTCCTGTCTCTCC	710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=9.403;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.364;QD=18.70;ReadPosRankSum=1.745;SOR=2.690;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	1090020	rs61585798	TG	T	1837.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	1090803	rs3787016	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr19	1094004	rs12459404	G	A	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	1095151	rs10416031	A	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	1095336	rs1046041	C	T	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	1106615	rs713041	T	C	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:185,200:0.52:385
chr19	1108333	rs377552987	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.234;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr19	1108854	rs201177605	G	A	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:122,97:0.44:219
chr19	1109213	rs2159133	A	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:153,143:0.48:296
chr19	1109538	rs375608296	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:175,153:0.47:328
chr19	1110829	rs2302109	G	A	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:254,232:0.48:486
chr19	1111895	rs11881821	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	1112034	rs200406247	C	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:93,67:0.42:160
chr19	1112579	rs62131217	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr19	1113701	rs2302110	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr19	1114119	rs3746162	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr19	1114369	rs374653400	C	T	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,66:0.50:133
chr19	1115782	rs2072281	G	A	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=0.837;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:52,69:0.57:121
chr19	1115789	rs2072282	A	G	2750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.65;ReadPosRankSum=2.354;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:67,73:0.52:140
chr19	1116935	rs7251039	G	A	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=1.954;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:102,117:0.53:219
chr19	1117007	rs8112247	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr19	1119019	rs2074920	C	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,100:0.58:171
chr19	1119281	.	G	A	603.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr19	1119699	rs7249751	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr19	1119876	rs8107205	T	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr19	1119963	rs2074921	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:160,101:0.39:261
chr19	1120101	rs2074922	C	G	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:78,94:0.55:172
chr19	1122147	rs2072280	G	A	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:158,175:0.53:333
chr19	1124053	rs2024093	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr19	1132007	rs2286400	G	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	1147431	rs56808651	T	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=-1.707;QD=3.99;ReadPosRankSum=-0.788;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr19	1154517	rs75953628	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.403;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	1207238	rs3764640	G	T	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.441;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:49,47:0.49:96
chr19	1207280	rs3764641	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=1.057;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	1218523	rs2075604	G	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr19	1219159	.	C	T	307.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	1219274	rs34928889	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr19	1219421	rs376313955	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:81,91:0.53:172
chr19	1219443	rs147990629	G	GCGGGGGC	1518.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr19	1220321	rs2075606	T	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr19	1222926	.	A	G	385.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	1231142	rs8110590	T	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr19	1251781	rs2285811	A	G	7339.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:404,374:0.48:778
chr19	1254122	rs2301761	G	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr19	1254359	rs201314448	G	A	4399.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:223,219:0.50:442
chr19	1256998	rs9823	C	T	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:102,118:0.54:220
chr19	1270181	rs114106544	G	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,98:0.49:198
chr19	1270231	rs377634662	GCC	G	1024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.045;QD=13.85;ReadPosRankSum=-1.154;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr19	1272040	rs12488	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,117:0.57:207
chr19	1277275	rs757292	G	C	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.051;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:69,91:0.57:160
chr19	1295989	.	GTGGGGCCAGGGGGGAGTGGGCGGGGCCGCGGAA	G	252	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=22;MQ=62.28;NF=0;NR=4;PP=252;QD=71.25;SC=GGGCCGCGGTGTGGGGCCAGG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=1296029;WS=1295979;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	1354983	rs10555657	AGCG	A	789.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=41.56;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	1357082	rs713042	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr19	1360575	rs3826942	G	A	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	1366179	rs72377165	CGCTGGGGTCACCCCCAGA	C	1631.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	1366422	rs2668418	C	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	1371159	rs116347581	G	A	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr19	1371354	rs2668424	T	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:134,129:0.49:263
chr19	1388538	rs1142530	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr19	1389045	rs73515044	T	C	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:304,291:0.49:595
chr19	1389064	rs7258846	G	T	5144.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:247,254:0.51:501
chr19	1389168	rs192541486	G	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr19	1389176	.	A	G	869.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:75,46:0.38:121
chr19	1389215	rs200247849	TACAC	T	1105.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr19	1389324	rs66919466	ACT	A	3951.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,109:0.52:211
chr19	1389517	rs11666067	C	A	2566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.442;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:184,137:0.43:321
chr19	1390839	rs7256647	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr19	1393469	rs73515052	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	1395503	.	C	T	1627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.203;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:161,95:0.37:256
chr19	1398782	rs114229164	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:115,107:0.48:222
chr19	1399723	rs266808	A	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr19	1407618	.	A	AGCCGCCGCC	331.74	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	1417722	.	T	G	170.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	1421046	rs72458772	ACT	A	501.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	1421083	rs116621053	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr19	1422299	rs2271055	T	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	1430170	rs369409330	T	G	4947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.040;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:145,131:0.47:276
chr19	1430177	rs375043193	T	C	5167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=0.327;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:161,143:0.47:304
chr19	1430303	rs113778676	T	C	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	1435010	.	TG	T	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.695;QD=13.71;ReadPosRankSum=0.210;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	1438467	rs373705155	C	T	6060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.138;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:362,306:0.46:668
chr19	1438865	rs7251165	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=1.212;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	1439957	.	G	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.334;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr19	1453705	rs12985827	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr19	1454985	rs35774440	ACC	AC,A	56	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=4;set=Intersection	GT:AF:DP	1/1:1.00:4
chr19	1455933	rs146334923	C	CAGAGTCAGAGCCCAGGGCGAAGTCATCCCAGGA	1363.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1456544	rs2656869	A	G	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	1457875	rs12005	G	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	1457894	.	C	CGGG,CGGGGGGGG	835.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=23;set=Intersection	GT:AF:DP	1/1:1.00:15
chr19	1460998	rs7256954	A	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:157,138:0.47:295
chr19	1462224	rs112629291	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr19	1465122	rs374264119	G	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr19	1467684	rs265273	A	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr19	1467770	rs265272	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr19	1468328	rs182043	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	1469030	rs265278	A	G	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr19	1469371	.	C	T	30	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=86;MMLQ=19;MQ=58.21;NF=1;NR=2;PP=30;QD=21.5904041824;SC=CCCCAGGGCGCCTCGCCCCGC;SbPval=0.42;Source=Platypus;TC=9;TCF=5;TCR=4;TR=3;WE=1469379;WS=1469361;set=Platypus	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	1469530	rs166452	C	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr19	1470021	rs265277	T	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:141,137:0.49:278
chr19	1475391	rs166451	A	C	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr19	1482315	rs145661644	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	1483246	rs114410467	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=1.383;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	1483753	rs149306857	G	A	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.539;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:90,81:0.47:171
chr19	1487561	rs62128466	C	G	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-1.553;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:190,153:0.45:343
chr19	1489770	rs791468	T	G	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:122,115:0.49:237
chr19	1490377	rs791469	T	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	1491171	rs791473	T	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	1495670	rs2668411	C	T	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr19	1496263	rs2244686	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr19	1496699	rs10641649	C	CTG	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	1496718	rs10414511	C	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.77;ReadPosRankSum=1.556;SOR=2.768;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	1496718	.	CGC	TGT	708	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=3;MGOF=32;MMLQ=27;MQ=59.79;NF=0;NR=14;PP=708;QD=54.3905624902;SC=TGTGTGTGTGCGCGCGCGCGC;SbPval=1.0;Source=Platypus;TC=35;TCF=5;TCR=30;TR=14;WE=1496728;WS=1496706;set=Platypus	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	1496720	rs112026182	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=1.292;SOR=2.768;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	1497121	rs2244801	G	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	1497305	rs113278021	A	G	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:161,175:0.52:336
chr19	1497466	rs80104934	G	A	4416.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:251,223:0.47:474
chr19	1497543	rs1050017	A	G	12041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=-1.247;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:381,316:0.45:697
chr19	1497547	rs78735375	C	A	12217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.14;ReadPosRankSum=-2.099;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:381,332:0.47:713
chr19	1498002	.	C	T	24	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=24;QD=19.5904041824;SC=GCATGAATCCCGGCTGTGCCG;SbPval=0.65;Source=Platypus;TC=10;TCF=3;TCR=7;TR=3;WE=1498010;WS=1497992;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	1506448	rs75714435	T	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	1507535	rs791461	T	C	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:96,119:0.55:215
chr19	1507710	rs791462	T	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr19	1508157	rs145302429	GACCTGGGGAAAGGGC	G	1045.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr19	1510172	.	T	C	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-1.102;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:170,145:0.46:315
chr19	1510661	rs265291	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr19	1526931	rs2656858	A	C	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:166,177:0.52:343
chr19	1527036	rs2656859	G	A	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr19	1527051	rs11288093	CG	C	2632.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	1528231	rs2668408	T	C	3979.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.530;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,153:0.99:155
chr19	1528780	rs2656861	A	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	1529385	rs2656862	C	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.970;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:71,63:0.47:134
chr19	1529527	rs2668409	G	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	1529550	rs2656863	A	G	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	1530015	rs2668410	C	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	1531663	rs146667790	C	T	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:166,155:0.48:321
chr19	1533869	rs61257352	GT	G	792.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=-0.145;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	1533870	rs265286	T	G	261.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=0.112;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr19	1533871	rs201797915	GGGGGCGAGGGGT	G	793.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.89;ReadPosRankSum=0.245;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	1533972	rs11084897	C	G	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.193;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:59,66:0.53:125
chr19	1534042	rs10853954	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr19	1534155	rs11084898	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.560;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	1534191	rs10775585	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	1534215	rs11084899	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	1535084	rs12984316	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,75:0.54:140
chr19	1535147	rs265283	C	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:135,133:0.50:268
chr19	1535193	rs58035688	GCCC	G	7018.73	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:236,188:0.44:424
chr19	1535205	rs265282	G	C	15160.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	1535349	rs265281	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr19	1555434	rs200001023	A	AC	1215.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr19	1555551	rs2277752	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.552;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr19	1555622	rs114451952	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr19	1567695	.	G	A	262.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	1584726	rs201597427	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr19	1584963	.	G	A	549.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr19	1585256	rs187905136	A	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr19	1599629	.	G	A	877.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr19	1605349	rs200457463	G	A	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr19	1611929	.	C	CA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=0.712;QD=22.10;ReadPosRankSum=1.465;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	1611932	.	G	GA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.366;QD=22.25;ReadPosRankSum=0.366;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	1615775	rs149277795	C	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:160,69:0.30:229
chr19	1619339	rs8140	T	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	1619749	rs10648013	A	AGGGTG	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	1620883	rs190947326	G	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr19	1622116	rs2240590	G	A	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr19	1624007	rs55677929	A	G	2929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.845;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:179,153:0.46:332
chr19	1624036	rs140533767	C	A	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:169,143:0.46:312
chr19	1625811	rs11084904	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr19	1627491	.	C	A	838.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr19	1650019	rs111231760	CAG	C	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	1650134	rs1860661	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	1783261	rs2385387	C	T	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=1.910;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:119,100:0.46:219
chr19	1784890	rs3764605	A	G	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.974;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:74,62:0.46:136
chr19	1784944	rs3764606	A	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=1.513;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr19	1789721	rs56335545	T	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.416;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr19	1789767	rs181880881	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr19	1792190	rs2286004	A	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	1795783	.	TACACACACACACACAC	T,TACAC	1541.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=9.420;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.12;SOR=4.163;set=HC	GT:AD:AF:DP	1/2:1,33,14:0.69,0.29:48
chr19	1796166	rs8100856	C	T	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr19	1799763	.	C	CA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.544;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr19	1802433	rs10418344	T	C	10401.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	1806210	rs7252063	A	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	1806463	rs28397595	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	1809598	rs9941464	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:118,103:0.47:221
chr19	1809836	rs8107742	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	1810605	rs716993	T	C	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	1811408	rs75759084	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.759;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr19	1811547	rs12609187	A	G	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	1811603	rs7250872	C	T	3805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=2.612;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:240,198:0.45:438
chr19	1817113	rs12976128	A	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr19	1817134	.	C	CCCAGATGGGG	1680.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.93;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1817866	rs2304612	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr19	1818459	rs1610106	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	1818952	rs893538	C	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	1819125	rs2396359	T	C	3235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.447;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:152,169:0.53:321
chr19	1821637	rs4807145	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	1825927	rs149465929	TCTC	T	2545.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr19	1827020	rs143867072	T	TGGA	919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.301;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=0.751;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr19	1827565	rs10415018	A	G	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr19	1848243	rs12984809	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1854557	rs3746045	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	1880950	rs4807160	T	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	1905356	rs754066	G	A	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-1.286;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:64,71:0.53:135
chr19	1905559	rs754065	G	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-1.421;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	1908423	rs10408061	T	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	1912934	rs12984675	T	C	15302.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr19	1912986	rs76159002	C	T	12045.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	1914940	rs11084918	A	G	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	1915118	rs10853957	A	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	1918023	rs10415845	T	C	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	1924005	rs28719567	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	1952881	.	CAG	C	5307.73	.	AC=1;AF=0.500;AN=2;DP=310;set=Intersection	GT:AD:AF:DP	0/1:151,138:0.48:289
chr19	1952893	rs16991001	C	T	5202.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:152,136:0.47:288
chr19	1953922	rs76156271	C	T	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:170,207:0.55:377
chr19	1954126	rs34622118	C	CA	5916.73	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:166,154:0.48:320
chr19	1954128	rs34797288	T	C	5925.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:162,151:0.48:313
chr19	1978271	rs740423	C	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr19	1979386	rs11550450	C	T	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:112,99:0.47:211
chr19	1980081	rs71337071	G	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:111,112:0.50:223
chr19	1980397	.	C	G	544.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr19	1986414	rs2286352	G	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-1.370;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr19	1986455	rs7254820	A	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:86,54:0.39:140
chr19	1987279	rs11669527	C	T	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	1987386	rs8111128	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	1990825	rs8102506	G	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	1990902	rs77857181	A	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	1997363	rs1610045	A	G	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.919;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:120,111:0.48:231
chr19	2037834	.	G	GA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=2.135;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	2040061	rs56197957	T	C	8013.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=2.217;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:2,308:0.99:310
chr19	2041032	rs2287003	T	C	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	2042886	rs7253052	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	2043412	.	A	G	552.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr19	2046281	rs148071042	G	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:92,103:0.53:195
chr19	2046325	rs75854250	C	T	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.176;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:198,140:0.41:338
chr19	2073466	rs758145	T	C	12569.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:6,511:0.99:517
chr19	2078409	rs2074893	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	2078488	rs2074894	T	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	2098835	rs60844806	AG	A	4658.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	2098864	rs58783004	AG	A	3416.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	2099109	rs2240649	G	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	2099109	.	GCT	TCG	1067	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=9;NR=16;PP=1067;QD=44.8187149945;SC=TGCACACCCTGCTGACATCCC;SbPval=0.64;Source=Platypus;TC=26;TCF=10;TCR=16;TR=25;WE=2099119;WS=2099099;set=Platypus	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	2099111	rs12984606	T	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	2116703	rs201354946	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	2123507	rs114230112	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	2244831	rs137869838	A	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr19	2244903	rs6510652	T	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	2246652	rs2074861	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	2249323	rs139215834	G	A	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:166,159:0.49:325
chr19	2249477	rs10407022	G	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr19	2251512	rs7252789	T	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	2251817	rs10417628	T	C	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	2252626	rs35356610	C	T	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:196,160:0.45:356
chr19	2253590	rs3746158	C	T	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	2255336	rs886363	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	2271263	rs28384670	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	2271282	rs2074457	T	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	2271314	rs28384671	G	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	2271323	rs2523175	A	G	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	2271577	rs28384674	CT	C	2606.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	2276527	rs139594592	GC	G	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr19	2278755	rs73518414	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	2280756	rs202241723	TCCTGCCGCTCCCTGCACCCA	T	519.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	2289984	rs185864642	C	T	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.008;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:42,59:0.58:101
chr19	2290499	rs7258841	C	T	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:128,144:0.53:272
chr19	2290870	rs8111892	G	C	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:83,107:0.56:190
chr19	2321854	rs886881	C	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:121,91:0.43:212
chr19	2324384	rs10404826	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	2328281	rs11666344	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-0.814;QD=15.61;ReadPosRankSum=-0.315;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr19	2334538	rs10413189	C	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr19	2337377	rs3752204	C	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	2339115	rs73520586	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:68,68:0.50:136
chr19	2339773	rs60107832	G	A	2095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=1.914;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:122,115:0.49:237
chr19	2339949	rs3746285	T	C	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.09;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	2339958	rs1609752	T	C	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	2340046	rs3746287	C	T	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.586;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:74,61:0.45:135
chr19	2340151	.	G	T	1464.77	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:62,73:0.54:135
chr19	2340154	rs5826760	G	GC	4200.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr19	2340389	rs1008922	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	2341047	rs55818311	C	T	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	2341059	rs11880345	G	A	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=1.474;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:83,109:0.57:192
chr19	2341059	.	GT	AC	861	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=29;NR=34;PP=861;QD=14.5153630931;SC=GAGTCCTCGGGTGCACCAGGG;SbPval=0.64;Source=Platypus;TC=110;TCF=53;TCR=57;TR=63;WE=2341068;WS=2341037;set=Platypus	GT:AD:AF:DP	1/0:47,63:0.57:110
chr19	2341060	rs7245824	T	C	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.01;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	2341079	rs73916992	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:113,78:0.41:191
chr19	2341209	rs7246088	T	C	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:4,206:0.98:210
chr19	2341405	rs73916993	G	A	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:235,256:0.52:491
chr19	2344637	rs28602188	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr19	2353148	rs10402284	T	C	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:89,99:0.53:188
chr19	2363776	.	C	CTGTG	354.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.47;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	2363778	rs7255676	C	G	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	2363787	rs7256144	A	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	2363805	rs4807241	T	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	2382603	rs145510194	G	GAC,GACAC	13647.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=406;set=Intersection	GT:AF:DP	1/2:0.51,0.49:336
chr19	2382678	rs148093377	TACAC	T	1377.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr19	2389872	rs891174	G	C	9441.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr19	2389954	rs891175	G	A	7147.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.05;ReadPosRankSum=0.424;SOR=0.453;set=HC	GT:AD:AF:DP	1/1:1,169:0.99:170
chr19	2389958	rs891176	T	A	7085.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.74;ReadPosRankSum=0.689;SOR=0.509;set=HC	GT:AD:AF:DP	1/1:1,161:0.99:162
chr19	2396556	rs7252886	C	T	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-0.153;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:105,123:0.54:228
chr19	2396611	rs17685098	C	T	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:97,109:0.53:206
chr19	2398849	rs10407225	A	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	2403014	rs17685104	A	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr19	2405559	rs7254110	A	G	5496.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:321,290:0.47:611
chr19	2405641	rs4807260	C	T	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	2408306	rs116772876	G	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	2410332	rs3848635	T	C	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:165,198:0.55:363
chr19	2413788	rs147023760	G	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:142,124:0.47:266
chr19	2413961	rs10153475	G	C	4819.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:279,247:0.47:526
chr19	2416833	rs184571404	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr19	2421747	rs73918165	C	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	2424938	rs7343178	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	2425184	rs184330957	A	G	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:191,166:0.46:357
chr19	2426198	.	G	GGGTCATGGGCATGCATTTTGGTACCACCCTTTGTTCCAA	426.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	2426828	rs6945	G	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	2427152	rs12609742	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	2427204	rs113881095	CT	C	1244.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr19	2431939	rs76678887	C	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr19	2432343	rs11880917	T	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	2432450	rs11882908	C	G	5295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.777;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:287,270:0.48:557
chr19	2432555	rs736705	A	G	5024.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:269,260:0.49:529
chr19	2433713	.	G	A	953	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=24;MMLQ=23;MQ=45.15;NF=39;NR=15;PP=953;QD=18.2920594916;SC=CGGTCATTCCGGTCACCTTGT;SbPval=0.82;Source=Platypus;TC=81;TCF=53;TCR=28;TR=54;WE=2433721;WS=2433703;set=Platypus	GT:AD:AF:DP	1/0:27,54:0.67:81
chr19	2433735	.	C	T	1526	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=3;MGOF=24;MMLQ=24;MQ=52.21;NF=22;NR=21;PP=1526;QD=36.297004943;SC=CCCTGCCTCGCATTGGCCGGC;SbPval=0.18;Source=Platypus;TC=117;TCF=72;TCR=45;TR=43;WE=2433754;WS=2433725;set=Platypus	GT:AD:AF:DP	0/1:74,43:0.37:117
chr19	2433746	.	A	G	1526	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=3;MGOF=24;MMLQ=24;MQ=54.18;NF=28;NR=21;PP=1526;QD=31.8524737255;SC=ATTGGCCGGCAGCCCCGTCAC;SbPval=0.42;Source=Platypus;TC=134;TCF=81;TCR=53;TR=49;WE=2433754;WS=2433725;set=Platypus	GT:AD:AF:DP	0/1:85,49:0.37:134
chr19	2433890	rs11084940	A	G	13593.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:2,525:1.00:527
chr19	2434551	rs2304241	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr19	2444363	rs11668494	A	G	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:147,146:0.50:293
chr19	2477665	rs3214277	A	AC	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	2506056	.	G	GA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.597;QD=1.48;ReadPosRankSum=-1.447;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr19	2514966	rs67860726	CAG	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.644;QD=4.79;ReadPosRankSum=1.079;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr19	2520716	rs1133692	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr19	2520791	rs3764585	C	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	2524477	rs4807289	T	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:106,72:0.40:178
chr19	2524508	rs73516630	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:69,101:0.59:170
chr19	2524659	rs4807290	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr19	2524685	rs4807291	C	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr19	2524819	rs8111910	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.156;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr19	2524824	rs8101230	T	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.088;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	2524834	rs8111050	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.229;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr19	2538074	rs71337145	C	CAAACA	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.045;QD=15.77;ReadPosRankSum=-0.533;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	2538668	rs16989558	A	G	4317.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=-0.643;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chr19	2538758	rs113521303	A	AT	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr19	2538760	rs7250546	A	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr19	2538808	rs142216309	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	2557267	rs71832797	GCA	G	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	2557312	rs76966814	GAC	G	3365.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,97:0.60:162
chr19	2557340	rs73520479	T	C	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:107,122:0.53:229
chr19	2557392	rs10421267	C	G	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:162,188:0.54:350
chr19	2575984	.	C	CAG	2976	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=2;HapScore=1;MGOF=49;MMLQ=27;MQ=57.52;NF=53;NR=20;PP=2976;QD=20;SC=CAGGCAGACACACACATGCTC;SbPval=0.5;Source=Platypus;TC=78;TCF=57;TCR=21;TR=73;WE=2575992;WS=2575983;set=Platypus	GT:AD:AF:DP	1/1:5,73:0.94:78
chr19	2576272	rs1029753	T	C	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	2643436	rs7247161	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=48.12;MQRankSum=3.419;QD=2.25;ReadPosRankSum=3.520;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:214,62:0.22:276
chr19	2717142	rs187199591	T	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.772;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	2717880	rs7343093	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.870;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr19	2732986	rs759073	T	C	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,106:0.46:230
chr19	2761334	rs3745813	C	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	2762585	rs2302491	A	C	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:182,131:0.42:313
chr19	2765328	rs2302494	G	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	2790686	rs8106185	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	2805177	rs115713656	G	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr19	2806923	rs116482195	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:118,103:0.47:221
chr19	2810889	rs374005993	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr19	2823257	rs6510702	CT	AC	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.093;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.21;ReadPosRankSum=0.093;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	2823269	rs6510704	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.04;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	2833576	rs8107668	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	2833617	rs8107771	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr19	2834808	rs8102063	T	C	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:136,154:0.53:290
chr19	2841360	rs1006717	G	A	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.395;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:62,60:0.49:122
chr19	2841695	rs10412693	G	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr19	2841718	rs11667713	C	T	115.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.43;ReadPosRankSum=-0.792;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	2852744	rs35627030	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,93:0.47:199
chr19	2853566	rs10412087	A	G	7262.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:3,279:0.99:282
chr19	2853803	rs73517582	G	A	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr19	2867293	rs113767858	G	A	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.157;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr19	2867583	rs8104536	C	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	2873439	rs9304900	C	T	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	2877365	rs10421121	C	T	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	2878013	rs35296337	G	A	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:83,80:0.49:163
chr19	2878397	rs11084965	A	G	1592.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-0.765;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr19	2896818	rs8100809	C	T	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,97:0.48:203
chr19	2896948	rs8104326	T	C	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.061;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:76,73:0.49:149
chr19	2896953	rs8101379	A	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.58;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	2900865	rs10420989	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	2900915	rs7255359	GA	AT	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	2900930	rs12981209	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr19	2901114	rs11279103	CGCCGAAGTCT	C	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	2915738	rs2043336	T	A	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	2916048	rs2043335	T	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	2916358	rs34115054	C	CA	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	2917186	rs2288959	T	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	2917287	rs2288958	C	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:117,118:0.50:235
chr19	2917612	rs10410539	T	C	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	2918176	rs61742123	C	T	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:48,107:0.69:155
chr19	2933480	rs3786948	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	2934282	rs3746073	T	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	2934519	rs10423550	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:120,111:0.48:231
chr19	2936443	rs7251272	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=23.99;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	2936623	rs4807371	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	2939268	rs10410034	A	G	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	2939289	rs12608916	A	C	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:69,113:0.62:182
chr19	2939396	rs12609268	T	C	12387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=0.762;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:362,331:0.48:693
chr19	2939401	rs12610412	C	G	12441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=1.130;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:368,328:0.47:696
chr19	2978135	rs445657	G	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr19	2979962	rs61170944	CA	C	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=0.000;QD=6.76;ReadPosRankSum=2.295;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr19	2981345	.	C	CAA	52.90	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=6.61;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	2981403	rs73514541	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr19	2981464	rs73514542	G	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,53:0.47:112
chr19	2982047	rs10445609	G	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	2989380	rs3746075	C	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	2989697	rs6510730	T	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	2989810	rs504199	G	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	2991715	rs10425071	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	2991814	rs428113	T	C	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.91;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	2991994	rs57654346	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	2993307	rs471344	G	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	2993427	rs435806	T	C	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,105:0.50:209
chr19	2993633	rs28562085	C	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	2994814	rs439808	T	C	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	2994837	rs401886	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	2994903	rs34831575	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr19	2994921	rs34551565	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr19	2995027	rs73919236	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=0.692;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr19	2995027	.	TCC	CCT	461	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=3;HapScore=2;MGOF=64;MMLQ=27;MQ=57.83;NF=2;NR=10;PP=461;QD=42.8723229052;SC=GTCATCCCACTCCGGCTCCTC;SbPval=0.78;Source=Platypus;TC=22;TCF=5;TCR=17;TR=12;WE=2995037;WS=2995017;set=Platypus	GT:AD:AF:DP	1/0:10,12:0.55:22
chr19	2995029	rs73919238	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.44;ReadPosRankSum=1.121;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	2995044	rs372329558	TC	T	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.017;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr19	2995054	rs141348286	TC	T	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=0.000;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	2997790	rs14089	T	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr19	2997976	rs416799	A	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr19	2998078	rs531153	C	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	3000839	.	T	TTC	372.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.911;QD=15.53;ReadPosRankSum=-1.249;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr19	3006227	rs7249797	A	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	3006236	rs3050847	A	AAT	2556.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	3009788	rs216284	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	3013616	rs216271	G	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	3013946	rs115991724	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.37;ReadPosRankSum=1.828;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	3013971	rs216272	T	A	170.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	3014639	rs216273	A	G	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr19	3017820	rs77298712	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-1.409;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr19	3019514	rs306029	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	3053802	rs425485	T	C	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	3054196	rs2302302	G	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	3056285	rs58280427	G	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	3057613	rs369942753	G	C	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:78,106:0.58:184
chr19	3061354	rs112386926	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	3062857	rs11539938	T	C	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:120,103:0.46:223
chr19	3062986	rs56193569	C	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.710;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr19	3094865	.	C	G	134.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	3113305	rs1682811	G	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	3119184	rs308046	T	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr19	3119405	rs370286	T	G	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:3,174:0.98:177
chr19	3119518	rs148483405	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	3121289	rs76763587	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr19	3149990	rs170159	G	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.25;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	3150238	rs310680	A	G	5962.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	3156025	rs78593231	G	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	3157885	rs61758985	T	C	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.04;ReadPosRankSum=0.776;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:64,70:0.52:134
chr19	3157887	rs72983041	A	G	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=1.173;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:64,68:0.52:132
chr19	3157916	rs66509881	C	T	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=1.416;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr19	3163106	rs114960813	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr19	3186085	rs11551095	G	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr19	3193180	rs538197	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	3193484	rs499877	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	3196122	rs311615	T	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr19	3196415	rs7256000	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	3198695	rs311620	C	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	3198777	rs311621	A	G	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr19	3201323	rs311624	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	3201479	rs8108552	C	T	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.674;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:51,49:0.49:100
chr19	3201678	rs12979678	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	3201695	rs311625	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	3204172	rs8106438	A	G	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-1.046;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:85,77:0.48:162
chr19	3206235	rs482758	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr19	3207338	rs312068	T	C	5237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-0.859;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:168,139:0.45:307
chr19	3207348	rs312069	G	C	5392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=-1.812;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:171,149:0.47:320
chr19	3273818	rs312928	T	C	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	3278206	rs11879556	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	3281380	rs8111871	C	T	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:183,195:0.52:378
chr19	3366545	.	TG	T	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.950;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	3381645	rs67426967	GC	G	5238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=4.354;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.785;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:147,169:0.53:316
chr19	3425081	rs41450045	G	A	3340.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:116,162:0.58:278
chr19	3433694	rs3833877	AC	A	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr19	3435254	rs2072349	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr19	3449182	rs34947929	T	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.19;SOR=3.007;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	3449182	.	TATC	GATC,GATG	551	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=24;MQ=60.0;NF=7,2;NR=45,17;PP=551,326;QD=11.2648310105;SC=CGGGCCCTCCTATCAGGCCTC;SbPval=0.54;Source=Platypus;TC=52;TCF=7;TCR=45;TR=52,19;WE=3449193;WS=3449172;set=Platypus	GT:AF:DP	0/1:1.00:52
chr19	3449185	rs61370671	C	G	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.278;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:37,27:0.42:64
chr19	3449201	rs57689663	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	3452637	rs1060363	C	T	7785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.959;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:390,383:0.50:773
chr19	3452644	rs10412720	G	T	7194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.069;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:349,363:0.51:712
chr19	3452683	rs8105687	A	G	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	3456738	rs2240665	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	3478418	rs56801248	T	C	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:131,135:0.51:266
chr19	3478646	rs10413312	C	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	3480232	rs2240666	A	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=1.313;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr19	3480358	rs2074961	T	C	2054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-2.201;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:231,121:0.34:352
chr19	3526452	rs2286543	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	3530893	rs73527913	G	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr19	3533486	rs740682	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr19	3534655	rs740685	G	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr19	3534696	rs740686	C	T	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	3538646	rs114420443	A	G	1689.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	3538647	rs113259909	C	CGTGGGTGCGTG	1680.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	3538654	rs1128872	G	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	3539158	.	CG	C	775	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=5;HapScore=2;MGOF=89;MMLQ=24;MQ=60.0;NF=5;NR=14;PP=775;QD=42.4210526316;SC=GGCAGGAGCCCGGGGGATCCA;SbPval=0.9;Source=Platypus;TC=53;TCF=21;TCR=32;TR=19;WE=3539166;WS=3539148;set=Platypus	GT:AD:AF:DP	1/0:34,19:0.36:53
chr19	3539214	rs145736894	C	CCCCTCGGGGA	4031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=19.76;ReadPosRankSum=1.519;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:105,99:0.49:204
chr19	3539292	rs138477057	C	CCCCT	3674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.230;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:117,95:0.45:212
chr19	3539444	rs7258234	T	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	3543478	rs11398304	G	GC	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.125;QD=12.76;ReadPosRankSum=0.776;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,37:0.63:59
chr19	3544120	rs11667842	G	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	3546340	rs11555328	G	A	9185.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	3546440	rs60929757	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr19	3546463	rs28528221	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	3547227	rs11882042	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	3548057	rs6510759	T	C	9853.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	3548313	rs2240752	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	3557005	rs1715092	A	G	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	3576186	rs375024663	C	T	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	3577191	rs10408835	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.144;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	3578492	.	CCT	C	351.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	3586471	rs8100350	A	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr19	3586543	rs8113232	G	A	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:152,131:0.46:283
chr19	3589413	rs10406702	T	C	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=1.368;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:96,64:0.40:160
chr19	3589435	rs10426399	C	T	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-0.454;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:116,91:0.44:207
chr19	3595794	rs4523	A	G	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:116,109:0.48:225
chr19	3610502	rs740349	G	A	160.89	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	3611146	rs2074786	A	G	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr19	3611186	rs758016	C	T	2850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=1.186;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:76,75:0.50:151
chr19	3611190	rs758017	C	A	2706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=1.865;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:77,72:0.48:149
chr19	3611765	rs2369188	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:147,100:0.40:247
chr19	3611972	rs2158935	G	A	4123.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:251,214:0.46:465
chr19	3612683	rs73920175	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	3612914	rs6510763	T	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr19	3613346	rs2074789	G	A	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.180;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr19	3613400	rs2240504	C	G	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=-0.151;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr19	3613422	rs2074790	G	A	2590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.969;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:84,82:0.49:166
chr19	3613596	rs57918402	A	G	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr19	3614403	rs7255692	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	3621070	rs73920181	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr19	3623229	rs7252821	A	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	3623444	rs58547709	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	3623505	rs7252742	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	3626476	rs4806945	T	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr19	3637395	rs10408855	T	C	3969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-1.463;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:245,208:0.46:453
chr19	3638041	rs1879038	G	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	3641672	rs3815338	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr19	3643393	rs115336798	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,38:0.39:97
chr19	3644062	rs73920196	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	3645947	rs12460780	G	A	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr19	3645963	rs114592940	G	A	4046.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:137,117:0.46:254
chr19	3647440	rs4806948	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,51:0.41:125
chr19	3653525	rs2074957	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,79:0.48:165
chr19	3656652	rs10432303	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	3660944	rs3826944	G	A	5765.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:295,293:0.50:588
chr19	3662057	rs188261303	C	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	3667461	rs7257360	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	3722079	rs113181248	TGCGTCCGC	T	500.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	3728609	rs2067019	G	A	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:223,211:0.49:434
chr19	3730041	rs7258176	C	T	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	3731783	rs8101530	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr19	3731847	rs1879039	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr19	3731985	rs1879040	G	A	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr19	3733651	rs2302304	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	3733960	rs114271931	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	3734175	rs3746122	G	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr19	3738649	rs599587	A	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr19	3738971	rs600986	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:121,106:0.47:227
chr19	3740658	rs10416362	T	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.581;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:35,46:0.57:81
chr19	3740771	rs112931167	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	3745941	rs478723	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	3746087	rs501168	G	A	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.026;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:76,82:0.52:158
chr19	3746207	rs624300	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.55;ReadPosRankSum=-2.559;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	3751408	rs202068228	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.673;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	3759699	rs145676775	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:91,83:0.48:174
chr19	3759802	rs35932323	C	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr19	3760056	rs61729800	G	A	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:120,138:0.53:258
chr19	3762698	rs13960	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	3762926	rs7245624	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.83;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	3762926	.	GAGG	AAGA,AAGG	390	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=7,17;NR=12,29;PP=232,390;QD=15.0246249927;SC=CAAGCGCAGAGAGGCGGATGC;SbPval=0.57;Source=Platypus;TC=46;TCF=17;TCR=29;TR=19,46;WE=3762937;WS=3762916;set=Platypus	GT:AF:DP	0/1:0.41:46
chr19	3762929	rs11881165	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.313;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr19	3767265	rs7239	C	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	3771880	rs11085039	C	T	602.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr19	3772028	rs56745522	C	CGGG	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.807;QD=5.89;ReadPosRankSum=-1.056;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:70,32:0.31:102
chr19	3772325	rs10419790	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr19	3779934	rs12610723	A	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	3781566	rs11671881	C	A	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:134,133:0.50:267
chr19	3783070	rs3746115	G	A	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.815;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:76,82:0.52:158
chr19	3784757	rs2074976	T	G	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	3785223	rs4807509	T	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	3805995	rs112638801	G	A	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.078;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:98,69:0.41:167
chr19	3806162	rs8109765	T	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr19	3807228	rs113016084	G	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:112,81:0.42:193
chr19	3807369	.	C	T	192.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	3808854	rs116732527	C	T	2729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.665;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:188,146:0.44:334
chr19	3811216	rs78262210	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.223;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	3811422	.	C	T	1062.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr19	3811457	rs10413220	G	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=-0.620;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr19	3819230	rs201155220	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr19	3819275	rs2301840	A	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	3820293	rs2301844	A	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	3820305	rs2301845	T	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	3820441	rs2301847	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	3822008	rs28510805	C	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	3833572	.	TAA	T,TA	1932.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=1.027;SOR=0.704;set=HC	GT:AD:AF:DP	1/2:9,35,35:0.44,0.44:79
chr19	3833586	.	A	G	745.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr19	3835049	rs111253400	G	A	2723.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:105,133:0.56:238
chr19	3835119	rs113428650	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr19	3885706	rs73919386	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr19	3885881	rs56964691	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr19	3895252	rs138327456	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	3902722	rs2060247	C	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	3908201	rs3810373	T	C	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr19	3910933	rs4807527	G	A	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	3910997	rs139307304	CTG	C	350.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr19	3911012	rs4807528	T	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	3917608	rs11366574	A	G	30.29	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	3918721	rs11667520	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	3920616	rs8108660	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=25.16;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	3933711	rs142397479	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr19	3933841	rs147911719	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	3933847	rs139949882	T	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	3936405	rs11384333	C	CA	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	3938834	.	T	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.696;QD=2.39;ReadPosRankSum=-2.680;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr19	3938836	rs28375587	T	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.797;QD=5.24;ReadPosRankSum=0.183;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr19	3938841	rs372800507	TG	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.816;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.690;QD=6.25;ReadPosRankSum=-1.007;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	3938847	rs59201914	GT	G	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=37.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	3940025	rs113469967	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	3941247	rs34077521	CT	C	518.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.482;QD=13.65;ReadPosRankSum=-2.049;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr19	3958397	rs7255123	A	G	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	3960020	rs2304193	C	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:122,114:0.48:236
chr19	3963732	rs145241773	C	T	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:102,85:0.45:187
chr19	3964106	rs2278438	C	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	3977486	rs36527	A	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	3979408	rs36526	A	G	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr19	3980824	rs36525	A	G	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	3981526	rs45443207	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	3982196	rs199767773	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr19	3982785	rs7253591	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr19	3983184	rs2230560	A	G	14998.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=0.359;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:2,584:1.00:586
chr19	3983302	rs2305107	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	3984453	rs8100131	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,39:0.42:92
chr19	4013322	rs2289865	T	C	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:57,85:0.60:142
chr19	4013389	rs7257356	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	4028067	rs4520954	C	T	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:181,129:0.42:310
chr19	4028634	rs10424860	T	C	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr19	4028690	rs10418588	C	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	4028913	rs61268620	TT	GC	10025.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;JOINED;set=Intersection	GT:AD:AF:DP	0/1:278,263:0.49:541
chr19	4032949	rs895333	A	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr19	4033244	rs749449	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr19	4033462	rs7255988	T	C	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:217,184:0.46:401
chr19	4033489	.	C	T	5110.77	.	AC=1;AF=0.500;AN=2;DP=539;set=Intersection	GT:AD:AF:DP	0/1:269,260:0.49:529
chr19	4033614	rs12460140	G	A	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:119,119:0.50:238
chr19	4042077	rs4410205	C	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr19	4101062	rs10250	G	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	4102256	rs116475330	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr19	4102354	rs73918030	T	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:121,85:0.41:206
chr19	4117528	rs8157	G	A	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:126,129:0.51:255
chr19	4117705	rs350890	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr19	4117725	.	G	A	385.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	4123577	rs186641228	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=63.80;MQRankSum=-6.769;QD=7.87;ReadPosRankSum=1.759;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,46:0.42:109
chr19	4153659	rs350879	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4154846	rs4081614	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr19	4156841	rs350872	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	4169998	rs350852	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	4170378	rs350851	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4174950	rs350845	A	G	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	4177016	rs113645577	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.266;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	4177051	rs350844	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	4177331	rs350843	A	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	4180690	rs7260071	T	G	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	4180836	rs352493	C	T	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	4198154	rs1963331	C	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.91;ReadPosRankSum=-1.127;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr19	4198170	.	G	C	1234.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr19	4198464	rs188809457	C	A	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-1.425;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:78,115:0.60:193
chr19	4199809	rs112892199	C	CA	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr19	4199839	rs6510793	A	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr19	4200113	rs111250660	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,50:0.50:100
chr19	4200156	rs2052191	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	4200206	rs2052192	A	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr19	4202683	rs352513	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	4202793	rs7260407	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr19	4203017	rs55688435	G	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	4207585	rs61744768	G	A	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:205,221:0.52:426
chr19	4208082	rs2240670	T	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr19	4210356	rs12978469	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:61,74:0.55:135
chr19	4210401	rs60239405	C	CA	1960.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr19	4210465	rs12710072	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.386;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	4212548	rs77537445	G	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr19	4212808	rs58559746	C	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.570;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr19	4216408	rs200681953	A	G	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,109:0.48:227
chr19	4217058	rs61742138	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:85,102:0.55:187
chr19	4217207	rs353693	T	G	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	4217956	rs6510794	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=2.164;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	4222556	rs188479864	G	A	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=0.169;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:23,42:0.65:65
chr19	4222559	rs11085066	A	G	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=1.071;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr19	4224403	rs74549045	T	C	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:189,171:0.47:360
chr19	4229635	rs400089	A	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	4233031	rs78467411	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	4233095	rs117467902	TG	CA	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr19	4233107	rs111301100	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr19	4233328	rs201528061	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr19	4234856	rs9807908	T	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr19	4236996	rs4740	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr19	4237067	rs4905	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr19	4247005	rs2302164	G	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr19	4249200	rs201409768	C	G	6550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.642;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:370,341:0.48:711
chr19	4251069	rs1045750	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr19	4251084	rs1045752	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr19	4251241	rs116550490	C	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=0.160;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	4254308	rs11085067	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr19	4268543	rs4807565	G	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:72,86:0.54:158
chr19	4268821	rs375717316	G	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	4282862	rs182603213	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr19	4288184	rs2380178	C	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4288205	rs888928	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr19	4288220	rs888929	C	T	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:4,117:0.97:121
chr19	4288332	rs888930	A	G	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	4292597	rs888932	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr19	4292841	rs28477168	C	G	2786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=0.903;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:215,159:0.43:374
chr19	4292898	rs55767880	C	G	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:200,146:0.42:346
chr19	4292961	rs11287595	CT	C	1121.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:13,79:0.86:92
chr19	4294542	rs12977100	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	4294623	rs58237134	C	A	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=1.968;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:131,86:0.40:217
chr19	4297855	rs112590213	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.786;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	4297925	rs12459030	G	C	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.385;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:97,109:0.53:206
chr19	4302504	rs888933	C	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,78:0.48:163
chr19	4304774	rs17523436	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	4304855	rs62129299	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	4306311	rs4807578	T	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	4308098	rs11669091	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	4308128	rs73919830	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr19	4310327	rs11879976	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr19	4318178	rs79548531	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	4324390	rs112594246	G	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr19	4324564	rs57455784	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	4325133	rs5826839	CA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.839;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	4328860	rs11882358	T	C	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	4331940	rs145454096	AAAAG	A	1523.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.05;QD=42.33;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	4332105	rs7258060	A	T	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	4332193	rs58828365	CTTTTTTTTTT	C	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=41.79;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	4333666	rs10413905	T	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	4333711	rs7247504	C	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	4352763	rs11668153	C	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	4352837	rs111765325	G	GA	1639.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr19	4352838	rs11668187	C	G	3988.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:4,121:0.97:125
chr19	4352959	rs11882587	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	4353841	rs7246177	T	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	4354860	.	C	T	631.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr19	4355035	rs2041772	A	G	10331.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	4355054	rs2041773	A	G	9594.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	4355203	rs2041774	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	4357555	rs4807583	A	G	9258.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr19	4362691	rs243261	G	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr19	4363564	rs139561776	TGA	T	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr19	4363674	rs200561336	A	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.832;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	4408751	rs243347	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	4417938	.	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.167;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	4429007	rs62130978	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	4431896	rs243371	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.304;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr19	4442336	rs9352	C	T	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	4442529	rs243382	T	C	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	4442999	rs243383	T	G	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	4443046	rs2992	T	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:189,156:0.45:345
chr19	4446995	rs243389	C	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	4452497	rs243395	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=1.352;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	4453324	rs376965	T	C	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.97;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	4453324	.	TG	CC,CG	586	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=40;MMLQ=27;MQ=60.0;NF=26,43;NR=17,26;PP=586,280;QD=14.871345927;SC=CCACAACCTGTGTCCACCTTG;SbPval=0.49;Source=Platypus;TC=71;TCF=44;TCR=27;TR=43,69;WE=4453333;WS=4453314;set=Platypus	GT:AF:DP	0/1:0.61:71
chr19	4453325	rs411833	G	C	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-1.732;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:54,74:0.58:128
chr19	4453856	rs144275315	TCCAGGGCCAGGCA	T	681.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	4454083	rs1127888	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:79,58:0.42:137
chr19	4457496	rs10425328	CG	GC	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	4457518	rs56153949	C	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr19	4457650	rs1044510	C	T	5789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.829;QD=10.51;ReadPosRankSum=0.382;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:259,292:0.53:551
chr19	4457792	rs12977256	T	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.69;QD=28.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	4457796	rs12985963	A	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.90;QD=40.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	4472322	rs61606737	C	T	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:108,88:0.45:196
chr19	4472460	rs182316418	G	T	469.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.36;ReadPosRankSum=1.326;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	4472484	.	G	GAGGC	98.25	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	4472503	rs189053880	C	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	4475606	rs3816048	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,50:0.49:103
chr19	4488718	rs147061912	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr19	4488926	rs10421685	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:80,93:0.54:173
chr19	4488949	rs34663282	CT	C	218.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.586;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.162;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	4491476	rs11878416	G	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	4491859	rs143220156	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr19	4493708	rs892161	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,79:0.51:154
chr19	4496198	rs2288930	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr19	4498094	rs8112865	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr19	4498245	rs2288926	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	4498440	rs2288924	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr19	4498700	rs10406139	A	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	4499023	rs67274054	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.983;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	4499632	rs72100503	AAGCTGGCCGGGGAGG	A	3363.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	4502107	rs192180444	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.969;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,46:0.42:109
chr19	4502287	rs7254167	G	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	4508945	rs8105775	A	G	7625.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	4510377	rs11458793	C	CA	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.678;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:32,36:0.53:68
chr19	4510560	rs7251858	C	T	4536.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:187,216:0.54:403
chr19	4510850	rs145519622	G	A	4542.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:216,223:0.51:439
chr19	4511140	rs7255715	C	G	12433.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	4511341	rs74202324	T	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-0.342;QD=0.93;ReadPosRankSum=-7.356;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:444,74:0.14:518
chr19	4511350	rs7259721	T	A	14306.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.43;QD=28.00;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr19	4511453	rs7255187	G	A	18485.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=25.85;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,715:1.00:715
chr19	4511525	rs7256712	A	G	25680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.283;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;MQRankSum=-0.197;QD=32.34;ReadPosRankSum=0.999;SOR=0.106;set=HC	GT:AD:AF:DP	1/1:2,792:1.00:794
chr19	4511548	rs202212610	A	G	5833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.121;QD=7.53;ReadPosRankSum=3.249;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:461,314:0.41:775
chr19	4511647	rs7256387	C	G	14058.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	4511757	rs74627313	C	T	4814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=28.421;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=2.484;QD=14.91;ReadPosRankSum=8.335;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:108,215:0.67:323
chr19	4511830	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=85;MMLQ=18;MQ=58.44;NF=114;NR=125;PP=2962;QD=20;SC=TGGTCTGGACAGTCCCTTTGG;SbPval=0.56;Source=Platypus;TC=451;TCF=218;TCR=233;TR=239;WE=4511838;WS=4511820;set=Platypus	GT:AD:AF:DP	0/1:212,239:0.53:451
chr19	4511920	rs28460600	T	C	10194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.905;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=8.128;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-10.478;QD=16.99;ReadPosRankSum=-3.546;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:307,293:0.49:600
chr19	4511926	.	G	GACGGCCCCCTTGGCCACATTC	6976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.887;ClippingRankSum=0.000;DP=579;ExcessHet=3.0103;FS=13.601;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-13.570;QD=13.09;ReadPosRankSum=1.426;SOR=1.603;set=HC	GT:AD:AF:DP	0/1:321,212:0.40:533
chr19	4511929	.	A	AGCACCGGTGACCCCACTGCAGACGGTGTCCTTGGTGCCGGTCAGCACGGTCTTGGCTGTGTCTACACCTGTCTGGACG	10432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.400;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=10.984;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-10.899;QD=25.32;ReadPosRankSum=-7.734;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:324,88:0.21:412
chr19	4511944	rs143131726	A	G	7934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-3.357;QD=13.90;ReadPosRankSum=3.578;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:346,225:0.39:571
chr19	4511955	rs7260518	T	C	19920.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=33.15;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr19	4512072	rs73920828	T	C	5778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.017;QD=9.57;ReadPosRankSum=-0.060;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:308,296:0.49:604
chr19	4512469	rs148456744	A	G	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:186,171:0.48:357
chr19	4512514	rs7259625	G	C	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr19	4512637	rs57042059	A	G	6587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=17.43;ReadPosRankSum=1.005;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:206,172:0.46:378
chr19	4512637	.	ATT	GTG	2944	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=2;MGOF=17;MMLQ=27;MQ=59.9;NF=47;NR=60;PP=2944;QD=20;SC=CTCTGGCCAAATTCATGGCAC;SbPval=0.58;Source=Platypus;TC=244;TCF=110;TCR=134;TR=107;WE=4512647;WS=4512627;set=Platypus	GT:AD:AF:DP	0/1:137,107:0.44:244
chr19	4512639	rs61730741	T	G	6587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=17.34;ReadPosRankSum=0.986;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:207,173:0.46:380
chr19	4513143	rs4807595	CA	TG	8890.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=44.68;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	4513559	rs4807597	A	G	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	4516863	.	C	G	341.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	4517618	rs7250771	G	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr19	4523459	rs7254972	A	T	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	4525046	rs1610090	A	G	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.55;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	4525115	rs144666389	AGAGCTGGGG	A	7806.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr19	4525893	.	CACGGGGACAGGATACGGGGACAGCACGGGGACAGGAT	C	1658	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=24;MQ=59.11;NF=0;NR=9;PP=1658;QD=186.333333333;SC=ACGGGGACAGCACGGGGACAG;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=9;WE=4525937;WS=4525883;set=Platypus	GT:AD:AF:DP	1/0:12,9:0.43:21
chr19	4529285	rs112854070	C	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:88,91:0.51:179
chr19	4529622	rs72054277	TACACACACACACACACACACAC	T,TACACACACACACACACACACACACACACAC	1088.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	1/2:0.81,0.19:26
chr19	4529648	.	C	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.890;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=15.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=0.257;SOR=2.162;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	4534163	rs75471602	A	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	4538308	.	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	0/1:86,86:0.50:172
chr19	4538407	rs114295397	C	T	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:158,122:0.44:280
chr19	4538806	rs7251081	C	T	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr19	4539081	rs7254884	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	4539086	rs7254885	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	4539774	rs114993980	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	4539818	rs10401592	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	4540003	rs115514161	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr19	4540127	.	C	G	136.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	4544645	rs28731213	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-1.137;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	4546362	rs202211434	G	A	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:91,116:0.56:207
chr19	4546592	rs112691576	T	TTTAA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-0.000;QD=18.29;ReadPosRankSum=0.850;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	4548015	rs4807602	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr19	4548536	rs10421954	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	4550383	rs28667487	G	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	4550386	rs138569803	T	TTTTG	777.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	4550698	rs2043328	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	4552673	rs45579944	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr19	4554583	rs1610094	A	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	4554615	rs7258942	C	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	4554886	rs10408176	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:68,33:0.33:101
chr19	4555310	rs10853973	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	4556828	rs113768059	G	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.661;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr19	4557056	rs10422881	A	C	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	4558251	rs28672943	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr19	4558431	rs2304213	C	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	4657957	rs11148	A	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.475;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	4658047	rs12683	A	G	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:204,153:0.43:357
chr19	4658145	.	G	C	1392.77	.	AC=1;AF=0.500;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr19	4659924	rs72620522	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr19	4660799	rs2286366	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	4664754	rs2286367	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr19	4665043	rs75562772	T	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr19	4665107	rs78497871	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr19	4665115	rs11880911	G	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr19	4670236	rs10401515	C	G	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:152,172:0.53:324
chr19	4670313	rs2270090	C	G	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	4679754	rs10415374	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	4684642	rs8105807	A	G	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	4685276	rs10421782	A	C	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	4690817	rs13346537	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=0.852;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	4694518	rs146778406	G	GAC	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	4694630	rs115007261	G	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr19	4695384	rs57034092	G	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr19	4697757	rs7254243	C	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr19	4700187	rs2277735	A	G	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	4706098	rs112088461	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	4714044	rs2277733	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	4714468	rs7251000	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr19	4720031	rs3833278	C	CCCT	1128.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	4720042	rs11672100	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	4720052	rs3833277	G	GC	841.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	4722408	rs116853154	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	4722651	.	T	G	340.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	4769215	rs116697169	G	C	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr19	4770870	rs34288325	CT	C	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	4772202	rs3760955	A	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:116,115:0.50:231
chr19	4816241	rs1046673	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr19	4817288	rs11466722	A	AAGG	2022.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr19	4818378	rs7255265	T	C	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	4844665	rs36066928	TC	T	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	4847713	rs9973235	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	4847868	rs10406652	G	A	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=1.418;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:113,76:0.40:189
chr19	4847874	rs9304915	A	G	5827.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.74;ReadPosRankSum=-1.032;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:2,176:0.99:178
chr19	4852074	rs149440810	C	T	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:376,298:0.44:674
chr19	4852106	rs2271058	A	G	21414.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:3,817:1.00:820
chr19	4852137	rs1055919	C	T	7222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-2.062;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:394,369:0.48:763
chr19	4852337	rs2271057	A	C	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:159,170:0.52:329
chr19	4859937	rs8289	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr19	4896948	rs35308440	C	CT	784.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.520;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.989;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:10,47:0.82:57
chr19	4902722	rs8104713	A	G	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:165,157:0.49:322
chr19	4902754	rs2779168	G	A	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:111,120:0.52:231
chr19	4909629	rs8103849	C	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	4910889	rs2261988	G	T	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	4910924	rs2261986	C	T	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	4929124	rs5826865	GC	G	974.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr19	4929413	rs2251520	T	C	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-1.364;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:129,151:0.54:280
chr19	4929473	rs2123731	A	G	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,91:0.56:162
chr19	4941932	rs17883422	C	T	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr19	4944555	rs2602730	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:101,134:0.57:235
chr19	4945914	rs2250982	A	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4945917	rs2250981	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	4945974	rs2250978	T	C	606.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=7.636;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=-0.617;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr19	4950770	rs2307213	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:120,90:0.43:210
chr19	4954448	rs17878253	G	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=25.12;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4954644	rs2307207	C	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	4954679	rs55946225	G	GC	1385.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	5041010	.	C	A	252.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	5041178	rs2240678	T	C	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	5041316	rs2240679	T	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr19	5047419	rs138200599	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	5070809	rs730291	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr19	5110794	rs2613739	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	5111994	rs2613736	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	5119101	rs150808006	G	GA	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr19	5132051	rs2620839	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	5134096	rs2251561	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	5135392	rs2620836	A	G	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	5137192	rs2613790	C	T	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	5137846	rs2613786	G	A	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	5143958	rs116704202	G	A	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:116,102:0.47:218
chr19	5151322	rs10414796	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr19	5174025	rs12975415	A	G	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.632;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr19	5174030	rs2620822	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.23;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	5174180	rs2620821	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	5206775	rs1143700	A	G	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	5212267	rs116727277	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:108,110:0.50:218
chr19	5214486	rs61729768	C	T	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr19	5214533	rs9304921	A	G	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	5214697	rs4807697	A	G	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr19	5216896	rs5826875	C	CG	208.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	5220249	rs877935	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,104:0.46:224
chr19	5220436	rs45479500	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr19	5220511	rs877934	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	5220900	rs10412973	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	5222071	rs3746132	G	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	5223316	rs74618932	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	5229418	rs116472188	G	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr19	5238918	rs114029825	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr19	5239173	.	GGGGA	G	706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=62.48;MQRankSum=1.823;QD=23.56;ReadPosRankSum=-1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	5245971	rs2230607	G	A	10792.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	5250958	.	CGGGGG	C	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.79;ReadPosRankSum=1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	5251120	rs111754525	C	CG	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr19	5257318	rs77427975	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr19	5260878	rs36016542	T	C	1390.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=16.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=-0.778;SOR=2.291;set=HC	GT:AD:AF:DP	0/1:31,38:0.55:69
chr19	5260879	rs10708972	GT	G	1381.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr19	5264967	rs4807017	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:114,102:0.47:216
chr19	5455422	rs4375786	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	5455796	rs420325	A	G	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	5455890	rs61740899	C	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr19	5455978	rs8107825	T	C	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:169,149:0.47:318
chr19	5456450	rs8111108	T	C	15525.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr19	5587240	rs73920021	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	5591701	rs56222752	C	T	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	5595329	rs138382999	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.553;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	5595354	rs10413286	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	5600370	rs2285969	A	G	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.750;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:85,138:0.62:223
chr19	5613396	rs145997637	CAT	C	3393.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:159,177:0.53:336
chr19	5626258	rs73920031	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr19	5645444	rs2436502	G	A	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.740;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:124,123:0.50:247
chr19	5647970	rs16993079	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr19	5654449	rs1129046	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr19	5661896	rs35301279	A	AT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.456;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.319;QD=2.21;ReadPosRankSum=1.550;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:58,23:0.28:81
chr19	5667204	rs148831822	AC	A	1866.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr19	5686328	.	G	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=-0.767;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	5687059	rs113901360	G	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr19	5694349	rs2485256	G	A	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr19	5694630	rs2436514	C	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	5694649	.	C	CGGGCGCGGGGTGGTGGGGTGATGGGCGCGGGGTGGTGGGGTGAT	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.87;ReadPosRankSum=0.648;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	5696245	rs4073993	A	G	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	5696533	.	G	C	243.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	5696784	rs112238400	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr19	5696820	rs58283603	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	5707204	rs945828	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	5712108	rs2261565	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	5727414	rs5826899	C	CT	951.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr19	5746121	rs77656808	C	CA	576.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	5749070	rs58136456	C	T	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:185,134:0.42:319
chr19	5753572	rs374878871	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-1.422;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	5759231	rs11879365	T	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	5766090	rs2446200	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	5768331	rs10680062	T	TTTTA	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	5776391	rs116282598	T	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	5783037	rs146900286	G	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,109:0.58:188
chr19	5783634	rs2446210	T	C	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.650;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:43,53:0.55:96
chr19	5784370	rs2446212	C	T	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.060;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:112,99:0.47:211
chr19	5785812	rs8107987	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	5786669	rs114071992	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	5788228	.	G	GCA	3054.73	.	AC=1;AF=0.500;AN=2;DP=632;set=Intersection	GT:AD:AF:DP	0/1:341,187:0.35:528
chr19	5789527	rs35133593	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:123,98:0.44:221
chr19	5789565	rs2436487	T	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr19	5789805	rs2436486	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	5791167	rs2290776	T	C	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	5791245	rs76792018	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	5827620	rs8106995	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	5827737	.	C	T	6428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.282;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:313,328:0.51:641
chr19	5832589	rs9807877	A	C	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:145,115:0.44:260
chr19	5843784	rs3894326	A	T	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.422;QD=9.91;ReadPosRankSum=0.228;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr19	5844043	rs137909900	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=46.37;MQRankSum=-2.111;QD=11.48;ReadPosRankSum=0.380;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	5844537	rs778986	A	G	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	5844649	rs812936	G	A	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	5844790	rs28362460	G	A	3028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.398;QD=9.80;ReadPosRankSum=2.212;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:157,152:0.49:309
chr19	5844790	.	GCA	ACC	903	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=9;MMLQ=24;MQ=59.67;NF=31;NR=39;PP=903;QD=13.6638267837;SC=AGCTGAAATAGCAGTGCGGCC;SbPval=0.66;Source=Platypus;TC=151;TCF=71;TCR=80;TR=70;WE=5844800;WS=5844780;set=Platypus	GT:AD:AF:DP	1/0:81,70:0.46:151
chr19	5844792	rs28362459	A	C	10701.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=35.44;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	5866585	rs778982	C	T	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	5866654	rs778983	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	5866724	rs4807054	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	5866736	rs57100281	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.53;QD=37.67;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	5866816	rs28541500	G	A	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.20;QD=26.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	5866840	rs702065	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.77;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	5867177	rs778970	G	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr19	5867748	rs778971	G	T	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	5892317	rs1626918	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	5892382	rs1678867	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	5892433	rs1627779	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr19	5892486	rs1628564	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:88,58:0.40:146
chr19	5892568	rs1629368	G	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,54:0.37:145
chr19	5892770	rs1631032	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr19	5892954	rs1678868	T	C	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,76:0.56:135
chr19	5903807	rs8108064	G	T	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	5905141	rs10406399	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	5914605	rs7249419	A	G	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	5914625	rs7248090	G	A	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	5915392	rs10423464	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr19	5923955	rs73920090	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr19	5928185	rs274793	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	5932343	rs7253733	T	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr19	5995450	rs452767	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr19	6010064	rs585107	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr19	6013202	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=2.144;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr19	6147743	rs9304929	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	6151549	rs10422296	T	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.044;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	6151703	rs7252466	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr19	6156304	.	T	A	132.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	6156483	rs4807840	T	C	7800.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=1.654;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,304:1.00:305
chr19	6156676	rs80091062	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	6161110	.	C	CA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=1.833;QD=10.68;ReadPosRankSum=1.515;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	6161161	rs7250719	C	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	6165807	rs78767345	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.888;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr19	6190809	rs72157010	CAT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.262;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	6309687	rs28666483	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr19	6312129	rs111968068	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	6312536	rs75860938	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr19	6312646	rs75505945	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	6333290	rs2335192	T	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	6333440	rs150017787	C	A	4671.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:270,245:0.48:515
chr19	6333462	rs76964030	G	A	5021.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:245,258:0.51:503
chr19	6333626	rs112533303	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	6333650	.	G	A	318.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	6361845	rs57445020	G	GC	6729.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	6366230	rs10420388	A	G	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	6366481	rs10418574	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	6366493	rs80237049	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	6374813	rs10421175	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	6375831	rs2304198	G	A	7184.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	6380515	rs111666835	G	T	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:131,159:0.55:290
chr19	6381525	rs367852832	C	T	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:170,201:0.54:371
chr19	6381663	rs112970874	C	T	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:142,175:0.55:317
chr19	6383537	rs3745573	G	A	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.256;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:66,63:0.49:129
chr19	6391847	rs6510895	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	6392006	rs2304196	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr19	6392057	.	A	G	491.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	6392078	rs2247785	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr19	6413524	.	G	A	205.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	6415443	rs1616305	T	C	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,499:1.00:499
chr19	6415795	rs8103311	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr19	6417855	rs2258496	G	A	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:183,160:0.47:343
chr19	6419275	rs2305059	A	G	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.479;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:70,78:0.53:148
chr19	6436304	rs2860182	TC	CT	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	6436560	.	C	CT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.249;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	6441971	rs115946849	C	T	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:119,111:0.48:230
chr19	6442185	rs184554072	G	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr19	6452305	rs173229	A	G	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	6452386	rs147601819	G	A	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:172,179:0.51:351
chr19	6454189	rs6510903	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	6454651	rs8103745	T	C	8551.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	6456019	rs10424879	T	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.013;QD=18.59;ReadPosRankSum=0.892;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:42,39:0.48:81
chr19	6456019	.	TGC	CGA	635	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=59.56;NF=11;NR=11;PP=635;QD=31.2939943119;SC=TGTGAGCCACTGCGCCTGGCC;SbPval=0.46;Source=Platypus;TC=46;TCF=25;TCR=21;TR=22;WE=6456029;WS=6456009;set=Platypus	GT:AD:AF:DP	1/0:24,22:0.48:46
chr19	6456021	rs10418566	C	A	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=0.921;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr19	6456062	rs10418596	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr19	6456179	rs116555510	C	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	6456324	rs10425555	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr19	6456339	rs10425567	T	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr19	6456497	rs79304508	G	A	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:222,209:0.48:431
chr19	6457339	rs145149050	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.411;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr19	6457367	rs348370	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	6464936	rs348359	G	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	6466482	rs348362	A	G	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr19	6468061	rs34222984	C	T	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:92,126:0.58:218
chr19	6468591	rs150554676	C	T	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:152,149:0.50:301
chr19	6469042	.	C	CTT	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.677;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:62,52:0.46:114
chr19	6470574	rs200400196	GTTTTGT	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=-1.242;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	6471170	rs11882213	C	T	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-0.645;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr19	6475163	rs12976944	A	C	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr19	6475613	rs3745571	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:169,164:0.49:333
chr19	6476907	rs11880672	G	T	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:123,141:0.53:264
chr19	6477256	rs348398	G	T	2944.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.283;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.704;SOR=0.450;set=HC	GT:AD:AF:DP	1/1:1,114:0.99:115
chr19	6477324	rs348399	G	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	6477617	.	T	TTAATAATAATAATAA	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=49.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	6478925	rs3745570	C	G	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:1,431:1.00:432
chr19	6479576	rs76364016	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.70;ReadPosRankSum=0.330;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	6479584	rs75029872	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.65;ReadPosRankSum=1.153;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	6481530	rs3887594	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	6495064	rs446199	C	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	6496168	rs61741669	G	A	5047.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:307,265:0.46:572
chr19	6532648	rs3097295	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.077;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	6583279	rs16989918	T	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr19	6583564	rs72193958	CTTTTTTTTTTTT	C	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.68;ReadPosRankSum=-0.697;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	6585921	rs453462	G	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	6665020	rs344560	T	C	20408.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-1.394;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:2,796:1.00:798
chr19	6677799	rs11569585	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	6677989	rs17030	G	A	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:133,120:0.47:253
chr19	6679360	rs344555	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr19	6679511	rs2277984	C	T	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:190,171:0.47:361
chr19	6679563	rs2277983	T	C	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:137,121:0.47:258
chr19	6681991	rs7951	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr19	6685304	rs2241393	G	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	6689333	.	TAC	T	472	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=3;MGOF=94;MMLQ=23;MQ=58.25;NF=0;NR=21;PP=472;QD=22.6666666667;SC=TCTCTCTCTCTACCTACCTCC;SbPval=1.0;Source=Platypus;TC=39;TCF=1;TCR=38;TR=21;WE=6689358;WS=6689321;set=Platypus	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	6689342	rs73498313	C	A	2070.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=8.637;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.117;QD=33.95;ReadPosRankSum=-0.388;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:7,54:0.89:61
chr19	6689346	rs141412883	C	A	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.262;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=16.613;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.572;QD=33.72;ReadPosRankSum=0.729;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr19	6689367	.	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=8.741;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.653;QD=11.13;ReadPosRankSum=-1.859;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	6689371	rs13345176	C	T	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=37.10;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	6690461	rs6417195	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	6693387	rs389404	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr19	6693571	rs11085194	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr19	6693636	rs400443	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	6694399	rs385791	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr19	6696342	rs2287848	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	6696496	rs2287847	T	C	11754.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr19	6696557	rs2287846	C	G	14810.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,582:1.00:582
chr19	6696597	rs2287845	G	A	11391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.058;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:1,444:1.00:445
chr19	6696691	rs2355315	G	T	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=1.407;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	6696699	rs2253756	G	A	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.496;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	6696789	rs2355316	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	6697214	rs5826946	AT	A	286.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	6697406	rs423490	A	G	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	6697436	rs2230208	G	A	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:209,201:0.49:410
chr19	6697829	rs366510	G	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	6702042	rs433594	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	6702148	rs2230207	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.585;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	6702157	rs428453	C	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.24;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	6702246	rs432823	T	C	1002.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.048;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.233;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=2.616;SOR=0.464;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr19	6702598	rs406514	G	A	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	6708107	rs10659507	T	TTCTC	1281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.673;QD=22.89;ReadPosRankSum=1.003;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr19	6709848	rs2230204	C	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:84,97:0.54:181
chr19	6710572	rs189367	G	A	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.30;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	6710584	rs112132860	GGA	G	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-0.895;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	6712504	rs114252882	C	T	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:148,140:0.49:288
chr19	6713175	rs11085197	G	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr19	6718387	rs2230199	G	C	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:153,121:0.44:274
chr19	6731057	rs2279624	T	C	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	6731132	rs78817095	G	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,82:0.48:171
chr19	6731766	rs1702375	C	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.325;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr19	6732241	rs344618	C	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,135:0.47:286
chr19	6733105	rs137857092	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,54:0.48:113
chr19	6733517	rs339395	A	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr19	6737366	rs340136	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	6737435	rs340137	A	C	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:138,120:0.47:258
chr19	6737481	rs340138	T	C	10317.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr19	6737509	rs339401	G	A	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr19	6739724	rs190870479	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.216;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr19	6739934	rs344633	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	6743399	rs381897	A	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.30;ReadPosRankSum=-0.782;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	6743405	rs2277986	A	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-1.053;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	6743626	rs145584075	CG	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.637;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=39.008;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.757;QD=3.83;ReadPosRankSum=1.245;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr19	6744762	rs339405	A	C	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr19	6746342	rs79256079	T	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr19	6754188	rs2305807	T	C	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:237,195:0.45:432
chr19	6754774	rs168129	C	A	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	6759491	rs77311302	T	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr19	6759791	rs114004703	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	6760520	rs10419595	A	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=0.389;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	6760974	rs7258236	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,62:0.44:140
chr19	6761008	rs7258083	A	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-2.161;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr19	6761011	rs7246122	T	G	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-1.807;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:51,36:0.41:87
chr19	6763718	rs2305805	A	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr19	6763910	rs28735798	T	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	6763914	rs28713318	A	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.43;ReadPosRankSum=2.029;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	6820951	rs164016	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	6832063	rs74356028	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr19	6833777	rs186295	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	6836271	rs308196	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.54;ReadPosRankSum=-0.712;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	6836884	.	CA	TG	154	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=47;MMLQ=24;MQ=59.49;NF=4;NR=3;PP=154;QD=29.6382678375;SC=CACACACACACACACACGAGT;SbPval=0.47;Source=Platypus;TC=29;TCF=19;TCR=10;TR=7;WE=6836893;WS=6836874;set=Platypus	GT:AD:AF:DP	0/1:22,7:0.24:29
chr19	6836911	.	C	T	143	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=35;MMLQ=27;MQ=59.87;NF=7;NR=6;PP=143;QD=13.6747086575;SC=GCAGGATCCACGTGTAGGGTT;SbPval=0.41;Source=Platypus;TC=41;TCF=25;TCR=16;TR=13;WE=6836919;WS=6836901;set=Platypus	GT:AD:AF:DP	0/1:28,13:0.32:41
chr19	6847974	rs331680	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	6848220	rs331679	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	6853155	rs12104195	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	6853777	rs149801768	C	T	183.96	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	6897392	rs330879	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:132,121:0.48:253
chr19	6897464	rs330880	C	G	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:165,124:0.43:289
chr19	6898487	rs330882	G	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr19	6901891	rs897738	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:80,84:0.51:164
chr19	6903920	rs443658	A	G	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:161,142:0.47:303
chr19	6904137	rs370094	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr19	6904294	rs139433254	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=1.559;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	6906357	rs366181	C	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	6908456	rs452907	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,59:0.41:145
chr19	6908557	rs8113805	G	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr19	6908675	rs34044572	C	CT	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.050;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:39,46:0.54:85
chr19	6919529	rs171674	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	6919624	rs373533	A	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	6919753	rs461645	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	6919879	rs252566	C	T	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	6921713	rs34941944	G	GT	2177.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=22.45;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	6924672	rs2290634	A	G	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	6926355	rs4807915	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	6926378	rs2228539	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr19	6935113	rs252551	C	T	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:245,107:0.30:352
chr19	6935121	rs1160969	T	TAA	2845.73	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:230,97:0.30:327
chr19	6937683	rs388711	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:135,133:0.50:268
chr19	6939910	rs463891	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	6940189	rs464849	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	6953167	rs11085208	C	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	6954725	rs11085209	G	A	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	6972357	rs252579	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:114,124:0.52:238
chr19	6974564	rs466123	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,84:0.46:184
chr19	6977211	rs4807919	A	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr19	6977409	rs7255801	C	T	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr19	6980939	rs2035972	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	6981582	rs2035971	A	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	6981849	rs1874003	T	C	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	6981885	rs1874002	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	6984708	rs7247453	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr19	6984927	rs34752448	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	6988662	rs8107779	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.381;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	6988791	rs8103492	G	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:74,66:0.47:140
chr19	6988914	rs1466715	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr19	6991010	rs8108538	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	6994987	rs6510937	C	A	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	6995053	.	T	C	3003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.439;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:170,156:0.48:326
chr19	7005905	rs62126094	T	A	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.61;QD=26.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	7006048	rs12983790	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	7011766	rs6510942	T	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	7019104	rs34247386	AC	A	2777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.059;QD=11.48;ReadPosRankSum=0.787;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:127,115:0.48:242
chr19	7074872	rs2967648	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	7074899	.	A	T	376	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=3;MGOF=66;MMLQ=24;MQ=56.51;NF=2;NR=4;PP=376;QD=68.4618687579;SC=GGGCACGGGCAGGAGACGGGG;SbPval=0.15;Source=Platypus;TC=30;TCF=19;TCR=11;TR=6;WE=7074913;WS=7074889;set=Platypus	GT:AD:AF:DP	0/1:24,6:0.20:30
chr19	7074903	.	GA	G	459	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=3;MGOF=66;MMLQ=27;MQ=57.18;NF=2;NR=4;PP=459;QD=83.6666666667;SC=ACGGGCAGGAGACGGGGTGAC;SbPval=0.84;Source=Platypus;TC=24;TCF=11;TCR=13;TR=6;WE=7074913;WS=7074889;set=Platypus	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	7083629	rs966591	A	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	7083761	rs8110740	A	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:100,54:0.35:154
chr19	7116963	rs1051690	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	7117506	rs11883202	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	7119649	rs11672032	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.16;ReadPosRankSum=-0.399;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	7122511	rs34073323	AT	A	701.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	7132081	rs2860175	C	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	7132136	rs35169098	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:76,93:0.55:169
chr19	7132293	rs2229433	A	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:129,115:0.47:244
chr19	7141727	rs2229432	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:153,133:0.47:286
chr19	7141871	rs16994200	G	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr19	7142824	rs13306451	T	C	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:54,70:0.56:124
chr19	7142843	rs2229430	C	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr19	7142921	rs2229434	C	T	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:169,161:0.49:330
chr19	7142999	rs16994210	C	T	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:114,112:0.50:226
chr19	7143152	rs67009449	TA	T	725.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr19	7166043	rs57156578	T	TA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.972;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.283;QD=2.84;ReadPosRankSum=-0.301;SOR=0.194;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	7166109	rs2059807	A	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr19	7166388	rs2229429	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr19	7184651	rs3835070	GGA	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.111;QD=6.07;ReadPosRankSum=1.255;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	7293898	rs7508518	G	C	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	7427607	rs11260007	T	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	7427657	rs72990744	T	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:104,95:0.48:199
chr19	7437583	rs7507709	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	7437954	rs116526927	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	7440670	rs1025281	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:76,102:0.57:178
chr19	7504767	rs10401415	G	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	7504982	rs10422503	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:81,92:0.53:173
chr19	7506668	rs2287909	T	G	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	7506755	rs2287910	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	7506982	rs10424311	C	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	7509039	rs115136529	G	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr19	7518268	rs11463454	T	TC	669.74	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr19	7524743	rs11259996	G	C	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:125,126:0.50:251
chr19	7528734	rs2287918	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	7531722	rs112677825	A	AAAGGAAGAAG	1275.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr19	7532252	rs2303142	G	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	7533767	rs10405143	T	G	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	7533850	rs9329368	A	G	4920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-1.446;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:2,192:0.99:194
chr19	7534075	rs2241396	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.361;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	7534986	rs144464767	C	T	9843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=934;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.446;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:429,485:0.53:914
chr19	7537792	rs199959278	TG	T	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	7538039	rs11880122	A	G	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr19	7542118	rs7256275	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=3.202;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	7543080	rs7251754	T	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	7543113	rs7251857	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	7547074	rs2303146	A	C	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	7550601	.	AG	CA	719.77	.	AC=1;AF=0.500;AN=2;DP=39;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	7550667	rs10419652	A	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,62:0.55:112
chr19	7565735	rs115016050	C	G	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr19	7566325	rs114466327	A	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr19	7568966	rs113706007	A	ATCTCTCTC,ATCTCTCTCTC,ATCTCTC	1413.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/2:0.52,0.48:33
chr19	7569282	rs484870	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr19	7570729	rs683729	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	7570978	rs685034	T	C	11473.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	7570990	rs685048	A	G	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:174,140:0.45:314
chr19	7571030	rs3826736	T	A	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	7571067	rs200631755	A	AAGCCCCGCCCCATGG	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=11.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=1.682;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr19	7571135	.	T	TCCCCATGGAGCCCCGC	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.939;QD=11.23;ReadPosRankSum=0.143;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr19	7571255	rs35201413	C	T	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.014;QD=8.62;ReadPosRankSum=0.262;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:72,72:0.50:144
chr19	7572051	rs79875145	C	T	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:194,206:0.52:400
chr19	7593589	rs612862	C	T	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:113,105:0.48:218
chr19	7594159	rs625910	G	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr19	7595121	rs11880842	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	7595133	rs138618598	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr19	7606737	rs492092	G	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	7606848	rs143924707	C	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:86,73:0.46:159
chr19	7607023	rs577866	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	7607441	rs574930	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:85,76:0.47:161
chr19	7607564	rs620744	T	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	7615585	rs577219	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	7615682	rs66529260	GA	G	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	7615865	rs7250363	C	T	5794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-1.140;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:254,293:0.54:547
chr19	7615903	rs8107538	G	A	4631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.821;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:189,225:0.54:414
chr19	7616347	rs473899	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:98,114:0.54:212
chr19	7616451	rs2303177	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr19	7616474	rs661825	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	7618936	rs10424680	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr19	7619199	rs534464	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:103,91:0.47:194
chr19	7619239	rs597582	T	C	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr19	7619329	rs598023	G	A	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.461;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-0.987;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:65,50:0.43:115
chr19	7619338	rs598028	G	C	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.271;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:67,54:0.45:121
chr19	7619647	rs599328	G	A,C	1916.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.95;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:0,35,25:0.58,0.42:60
chr19	7619647	.	GT	AT,CC	847	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=21;MQ=60.0;NF=10,5;NR=15,15;PP=847,823;QD=35.2708485019;SC=CCCACCTCGGGTCCCGTCCTT;SbPval=0.39;Source=Platypus;TC=46;TCF=16;TCR=30;TR=25,20;WE=7619656;WS=7619637;set=Platypus	GT:AF:DP	0/1:0.54:46
chr19	7619648	rs599330	T	C	943.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-0.207;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	7619700	rs524530	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr19	7619760	rs539887	A	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr19	7620116	rs563826	A	G	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:250,226:0.47:476
chr19	7620769	rs8108791	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr19	7621222	rs59918870	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	7621475	rs45505598	T	G	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:248,167:0.40:415
chr19	7621648	rs489056	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	7621981	rs2446176	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	7622226	rs1645800	G	A	6665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=1.953;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:364,337:0.48:701
chr19	7623700	rs535208	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	7624079	rs538852	G	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:99,105:0.51:204
chr19	7625723	rs62111318	C	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:151,117:0.44:268
chr19	7626013	rs11307097	AC	A	9028.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr19	7626071	rs62111319	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:145,73:0.33:218
chr19	7626275	rs45474094	C	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	7626669	rs2303178	G	A	2433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-2.584;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:151,126:0.45:277
chr19	7670033	.	G	GGTGTGT,GGTGTGTGTGTGTGT	2220.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=81;set=Intersection	GT:AF:DP	1/2:0.62,0.32:68
chr19	7671042	rs57108239	A	AC	78.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:51,11:0.18:62
chr19	7672636	.	C	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=1.439;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	7675917	rs747569	C	G	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:92,118:0.56:210
chr19	7677321	rs59573618	GA	AG	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;JOINED;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr19	7678127	rs794088	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	7687278	.	T	C	3409.77	.	AC=1;AF=0.500;AN=2;DP=413;set=Intersection	GT:AD:AF:DP	0/1:226,184:0.45:410
chr19	7688838	rs732457	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	7693231	rs4134819	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	7694662	rs3760675	T	C	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	7697493	.	G	A	517.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr19	7698087	rs60073905	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	7703490	rs144737616	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.022;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	7703605	rs8104339	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr19	7704859	rs60534261	CAT	C	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	7705440	rs34833262	C	CTG	3459.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr19	7708214	rs2303115	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	7710040	rs929807	T	C	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	7710210	rs889187	A	G	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	7710269	rs710951	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	7711221	rs10001	T	C	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	7712277	rs6791	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	7712417	rs2303113	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	7712585	rs794073	T	G	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	7734511	rs3745367	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	7735089	rs10402265	G	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	7742345	rs8107661	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=0.057;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	7743879	rs4804766	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr19	7744075	rs112807024	ACC	A	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.55;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	7747293	rs6952	T	G	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	7747445	rs1053363	G	A	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	7754101	rs34694289	G	A	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-2.579;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:35,43:0.55:78
chr19	7754912	rs4996980	G	A	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=-1.200;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr19	7754917	rs4996979	T	C	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=7.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-0.661;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	7754942	rs4996978	A	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	7754964	rs4996977	T	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	7754968	rs4996976	A	G	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.83;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	7754971	rs4996975	C	T	7620.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	7755056	rs2228138	G	A	10602.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,416:1.00:417
chr19	7755159	rs4996973	A	G	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr19	7755213	rs4996972	C	T	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr19	7755285	rs28364072	A	G	10789.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr19	7755469	rs2277995	T	C	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	7755472	rs74927160	G	T	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.16;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	7755478	rs75584211	TG	CA	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.691;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	7755482	rs77121754	A	G	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.83;SOR=1.638;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	7755485	rs76013233	GC	AT	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.98;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	7755518	rs2277994	A	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	7761472	rs35446135	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr19	7761494	rs35085623	CTT	C	496.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	7761667	rs66479741	A	G	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:123,134:0.52:257
chr19	7761812	rs2277989	A	G	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	7762380	rs113716290	TCCCCTGCAA	T	4800.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	7762653	rs35652200	CTA	C	757.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	7763045	rs7249320	C	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	7763248	rs2228137	G	A	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:116,148:0.56:264
chr19	7764157	rs12984870	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr19	7764363	rs61499635	GTTTTT	G	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=1.243;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr19	7764436	rs12980031	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.38;ReadPosRankSum=-0.319;SOR=2.812;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	7764545	rs3214456	G	GC	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.108;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr19	7764741	rs2287867	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr19	7764772	rs2287868	T	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.849;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr19	7794605	rs2277997	T	C	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr19	7794969	rs201996252	G	A	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:155,153:0.50:308
chr19	7795455	rs111987684	G	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=0.976;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	7795813	rs6603117	G	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=16.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.511;SOR=1.770;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr19	7796497	rs11260026	C	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:80,96:0.55:176
chr19	7808163	rs11465391	G	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr19	7808806	rs73493973	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	7808840	rs73493975	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	7808879	rs77982873	T	C	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.474;QD=18.11;ReadPosRankSum=1.625;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:57,52:0.48:109
chr19	7808882	rs77377087	A	T	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.484;QD=17.60;ReadPosRankSum=1.301;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:61,55:0.47:116
chr19	7809079	rs17159887	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr19	7809116	rs57668221	C	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	7810035	rs11465383	C	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr19	7810086	rs11465382	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	7812181	rs7252229	G	C	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.144;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:93,105:0.53:198
chr19	7831061	rs479448	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr19	7831429	rs475896	C	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr19	7831700	rs562607	G	C	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:80,78:0.49:158
chr19	7833940	rs113121475	GCTT	G	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	7833982	rs1045997	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	7833994	rs1045998	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	7928462	rs10410459	T	C	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	7938306	rs58971992	A	AG	2928.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=34.87;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	7944348	rs56796931	TC	T	6320.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	7963914	rs524029	A	C	12356.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr19	7976116	rs10412007	T	C	3869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.902;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:198,192:0.49:390
chr19	7976529	rs2303700	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	7991895	rs497445	C	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	7992052	rs12976850	A	C	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr19	7992126	rs11542188	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr19	7992249	rs34491552	TG	T	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	7992959	rs34425383	T	C	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:171,123:0.42:294
chr19	7995987	rs58157552	T	TA	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.910;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:73,63:0.46:136
chr19	7997683	rs55850302	G	A	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:152,192:0.56:344
chr19	8000001	rs11542189	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-1.062;QD=10.35;ReadPosRankSum=-0.847;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:39,46:0.54:85
chr19	8000045	rs35989631	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.789;QD=7.10;ReadPosRankSum=0.183;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:29,20:0.41:49
chr19	8000104	rs3745387	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=27.36;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	8000146	rs3745388	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	8002868	rs55956614	T	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr19	8006186	rs373554761	AT	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.160;QD=2.41;ReadPosRankSum=-0.368;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	8006221	rs34075581	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=-0.632;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	8028544	rs14394	A	G	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:176,150:0.46:326
chr19	8032680	rs1077340	C	T	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,111:0.55:203
chr19	8121092	rs143413416	C	T	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=1.860;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:75,94:0.56:169
chr19	8122737	rs2303164	G	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:130,130:0.50:260
chr19	8122767	rs2303165	T	C	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	8137850	.	C	CGTGT,CGT	1362.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=63;set=Intersection	GT:AF:DP	0/1:0.82:44
chr19	8137902	rs7254691	C	T	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	8137908	rs28657412	C	T	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	8138054	rs7257948	C	A	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr19	8140037	rs35477781	A	C	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr19	8145921	rs2303168	C	T	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	8146114	rs2303169	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8146510	rs35618038	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	8148314	rs17160149	A	C	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	8150215	rs116296994	T	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	8150393	rs17160151	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-2.805;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:55,57:0.51:112
chr19	8150514	rs73922204	T	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr19	8150937	rs113807284	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-1.776;QD=7.23;ReadPosRankSum=-1.678;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	8150940	rs113722889	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-1.776;QD=7.23;ReadPosRankSum=-1.824;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	8150949	.	T	TG	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=5.190;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-2.440;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr19	8151239	rs8103000	G	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr19	8151929	rs6603139	T	C	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:120,104:0.46:224
chr19	8152058	rs114392304	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:82,45:0.35:127
chr19	8152725	rs12460643	A	G	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	8154760	rs35033566	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=0.518;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	8154899	rs45571440	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr19	8154990	rs35002391	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:93,93:0.50:186
chr19	8156208	rs8112982	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:79,59:0.43:138
chr19	8156290	rs8104453	A	G	12337.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr19	8159362	rs7245429	G	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr19	8160223	rs73503784	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr19	8160517	rs10413994	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=7.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.191;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	8160812	rs10404258	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr19	8161268	rs73503788	G	A	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,69:0.49:142
chr19	8162041	rs61633950	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	8171252	rs2126971	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	8174650	rs3813779	A	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr19	8174724	rs11672038	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr19	8176009	rs17160196	C	T	5223.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:296,268:0.48:564
chr19	8176331	rs57890400	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr19	8176463	rs11260057	A	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:125,103:0.45:228
chr19	8176569	rs35306870	G	A	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:175,147:0.46:322
chr19	8176596	rs141016150	A	G	2466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.187;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:119,123:0.51:242
chr19	8176640	rs12975322	C	T	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	8176919	rs4804264	C	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	8180359	rs141237390	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr19	8186263	rs7247560	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr19	8190674	rs368396188	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.055;SOR=2.424;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	8190750	rs35988441	T	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr19	8191238	rs10906993	C	T	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	8191248	rs10906994	A	G	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	8191323	rs7260558	T	C	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	8196444	rs4804271	C	T	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	8198103	rs12975055	G	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	8200759	rs6603148	G	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	8200861	rs80125054	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:66,87:0.57:153
chr19	8201029	rs200440094	GA	G	12615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.849;QD=15.65;ReadPosRankSum=-0.284;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:462,344:0.43:806
chr19	8201031	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=5;HapScore=1;MGOF=18;MMLQ=26;MQ=59.89;NF=78;NR=87;PP=2962;QD=20;SC=CTGGGCCAGAACCCCCAACAA;SbPval=0.58;Source=Platypus;TC=370;TCF=178;TCR=192;TR=165;WE=8201059;WS=8201021;set=Platypus	GT:AD:AF:DP	0/1:205,165:0.45:370
chr19	8201035	.	CCAA	C	2968	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=27;MQ=59.82;NF=11;NR=80;PP=2968;QD=20;SC=GCCAGAACCCCCAACAACATC;SbPval=0.77;Source=Platypus;TC=236;TCF=36;TCR=200;TR=91;WE=8201059;WS=8201021;set=Platypus	GT:AD:AF:DP	0/1:145,91:0.39:236
chr19	8201036	rs201444959	CAA	C	12578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.129;QD=15.59;ReadPosRankSum=0.217;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:469,338:0.42:807
chr19	8201051	rs8112525	T	C	26661.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,787:1.00:787
chr19	8202944	rs1531547	G	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8206553	rs73922237	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	8206748	rs12162233	G	A	11193.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	8206984	rs35460337	G	C	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:89,76:0.46:165
chr19	8207070	rs12162237	G	A	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	8209926	rs899208	T	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	8210564	.	CAA	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-1.034;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	8210998	rs79313027	G	A	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:142,151:0.52:293
chr19	8315847	rs379983	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	8319206	.	C	CAA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.84;ReadPosRankSum=-2.200;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	8320656	rs144397154	TGGGGCGGGGC	T	4246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=3.705;QD=19.75;ReadPosRankSum=0.583;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:103,112:0.52:215
chr19	8320890	rs2306199	T	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	8321182	rs28334	A	T	1573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-1.234;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:70,77:0.52:147
chr19	8321946	rs36247	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr19	8321969	rs36248	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr19	8322594	rs36250	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	8326772	rs76022690	T	C	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:134,136:0.50:270
chr19	8326904	rs36259	G	A	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	8367033	rs250510	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr19	8367427	rs2232786	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr19	8367504	rs250511	T	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr19	8367895	rs374436174	G	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr19	8386367	rs2241591	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	8386473	rs73495502	T	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	8387674	rs79602012	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr19	8400279	.	C	G	95.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	8467538	rs148680686	C	CTTGTTTTTTTCTTT	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8486953	rs10469477	C	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	8495840	rs77247930	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-2.557;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	8503574	rs11259981	A	G	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	8509770	rs114729685	G	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	8528310	rs8102587	A	G	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	8533504	rs7258281	TG	CA	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	8536373	rs12973706	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8538498	rs77353381	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8548019	rs76813197	T	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	8551094	rs2230647	T	C	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	8551852	rs11669139	A	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	8553470	rs140674749	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	8553630	rs6992	C	T	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	8555001	rs116166102	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	8555872	rs147092195	TCTC	T	6808.73	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:234,184:0.44:418
chr19	8555886	rs2303110	G	C	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:201,234:0.54:435
chr19	8560859	rs140064436	C	T	10020.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr19	8563456	rs2910435	C	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	8563912	rs80155757	G	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:108,116:0.52:224
chr19	8564288	rs58466313	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	8564466	.	CCTCAGGCGGCGGGGGCTTCAAGGACACTGCACCAAA	ACTGAGGCTGCGGGGGCTTCAAGGACACTGCACCAAA	2934	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=57.97;NF=15,0;NR=12,7;PP=2934,2904;QD=20;SC=AGGTCAGTGACCTCAGGCGGC;SbPval=0.56;Source=Platypus;TC=46;TCF=26;TCR=20;TR=27,7;WE=8564523;WS=8564456;set=Platypus	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	8564466	.	CCTCAGGCGGCGGGGGCTTCAAGGACACTGCACCAAA	C	2934	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=57.97;NF=15,0;NR=12,7;PP=2934,2904;QD=20;SC=AGGTCAGTGACCTCAGGCGGC;SbPval=0.56;Source=Platypus;TC=46;TCF=26;TCR=20;TR=27,7;WE=8564523;WS=8564456;set=Platypus	GT:AD:AF:DP	0/1:28,7:0.20:35
chr19	8564515	.	G	A	411.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:96,32:0.25:128
chr19	8567341	rs138708138	A	AC	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	8567475	rs968502	T	C	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:99,88:0.47:187
chr19	8567500	rs968501	G	A	2969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.057;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:89,80:0.47:169
chr19	8567548	rs968500	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr19	8575765	rs3111564	C	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	8576307	rs2910443	A	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	8576468	rs2967575	A	C	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	8576670	rs7175	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	8576862	rs2287865	G	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr19	8576888	rs2042302	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	8577868	rs2967578	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	8578000	rs1064010	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	8578118	rs1064009	A	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	8578199	rs1141019	T	C	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	8578837	rs150407322	C	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	8578860	rs2287864	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	8579011	rs2287863	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	8587201	rs145346891	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	8591572	rs2303687	C	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.000;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	8592207	rs2967774	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr19	8601051	rs57614495	G	GTC	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr19	8602027	rs74619257	T	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr19	8609175	rs150510779	G	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:43,64:0.60:107
chr19	8615268	rs2303686	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	8615668	rs112090287	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	8618209	rs112640311	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:112,77:0.41:189
chr19	8618424	rs75747242	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	8619302	rs34667346	G	GTGA	422.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr19	8619461	rs2913925	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr19	8620726	rs73501543	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	8642160	rs4542783	T	C	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:114,96:0.46:210
chr19	8645786	rs7252299	A	C	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	8646015	.	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.440;QD=9.36;ReadPosRankSum=1.160;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	8650581	rs73501568	G	T	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr19	8654106	rs73501572	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:119,95:0.44:214
chr19	8654762	rs78421590	C	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:105,79:0.43:184
chr19	8656655	.	CA	C	1208.73	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr19	8657092	rs71179860	C	CGGGATGGGGCTGGAAG	429.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	8660890	rs28433973	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr19	8662350	rs7248483	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.203;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	8668589	rs73922167	C	T	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr19	8668885	rs36044688	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=2.143;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	8669873	rs7260282	T	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr19	8669931	rs7255721	G	C	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	8841558	rs28324	T	C	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	8923117	rs250315	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	8924035	rs146501903	C	CT	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	8953801	rs2969292	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr19	8953922	rs2972588	C	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.934;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr19	8954061	rs369131429	TA	T	161.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	8961981	rs1035442	C	G	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:217,185:0.46:402
chr19	8979138	rs114849524	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr19	8982084	rs3752139	C	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	8987133	rs3764555	T	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	8987348	rs150904213	A	AAG	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.03;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	8993033	.	T	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-3.586;QD=4.80;ReadPosRankSum=0.040;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr19	8993036	.	G	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-3.646;QD=4.59;ReadPosRankSum=0.291;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr19	8993041	.	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-3.762;QD=4.20;ReadPosRankSum=0.531;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr19	8993048	.	C	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-4.247;QD=2.97;ReadPosRankSum=1.053;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr19	8994113	rs2009979	T	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	8994285	rs752410	T	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	8994373	rs873869	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	8995853	rs11672574	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	8997415	.	G	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=32.069;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-8.873;QD=7.80;ReadPosRankSum=-4.564;SOR=2.802;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr19	8997421	.	A	C	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=36.936;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-9.064;QD=7.52;ReadPosRankSum=-3.999;SOR=3.077;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr19	8997424	.	G	A	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=39.695;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-9.112;QD=7.39;ReadPosRankSum=-3.487;SOR=3.076;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr19	8997454	rs76629162	G	A	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=31.938;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-9.562;QD=7.66;ReadPosRankSum=1.550;SOR=2.560;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr19	8997463	rs73001893	C	T	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=31.737;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-9.758;QD=7.27;ReadPosRankSum=1.580;SOR=2.559;set=HC	GT:AD:AF:DP	0/1:109,34:0.24:143
chr19	8997472	rs113387108	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=34.566;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-10.879;QD=5.68;ReadPosRankSum=2.908;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:135,33:0.20:168
chr19	8997481	.	C	A	905.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=34.202;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-11.227;QD=5.09;ReadPosRankSum=1.726;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:145,33:0.19:178
chr19	8997482	.	C	T	905.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=33.944;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.364;QD=4.98;ReadPosRankSum=1.699;SOR=2.823;set=HC	GT:AD:AF:DP	0/1:149,33:0.18:182
chr19	8997499	.	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=22.742;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-11.357;QD=2.25;ReadPosRankSum=0.963;SOR=2.563;set=HC	GT:AD:AF:DP	0/1:175,25:0.12:200
chr19	8997507	.	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=10.209;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-9.000;QD=1.02;ReadPosRankSum=-0.163;SOR=1.779;set=HC	GT:AD:AF:DP	0/1:183,19:0.09:202
chr19	8997515	.	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=14.998;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-11.145;QD=1.54;ReadPosRankSum=-0.962;SOR=2.251;set=HC	GT:AD:AF:DP	0/1:180,20:0.10:200
chr19	8997517	.	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=12.961;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-11.346;QD=1.35;ReadPosRankSum=-1.098;SOR=2.118;set=HC	GT:AD:AF:DP	0/1:177,19:0.10:196
chr19	8997519	.	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=9.104;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-12.063;QD=1.18;ReadPosRankSum=-0.744;SOR=1.891;set=HC	GT:AD:AF:DP	0/1:179,17:0.09:196
chr19	8998532	rs57902801	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	8998830	.	G	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=7.966;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-6.284;QD=3.99;ReadPosRankSum=-0.607;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr19	8998832	.	AT	A	151.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.322;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.955;QD=4.10;ReadPosRankSum=-1.146;SOR=2.921;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr19	8998834	.	T	G	172.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.955;QD=4.67;ReadPosRankSum=-0.875;SOR=2.921;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr19	8998837	.	T	TGA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.955;QD=4.43;ReadPosRankSum=-0.875;SOR=2.921;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr19	8998839	.	GAC	G	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=8.105;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-5.870;QD=4.63;ReadPosRankSum=-1.624;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr19	8998851	.	T	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-4.491;QD=1.58;ReadPosRankSum=-0.671;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr19	8998857	.	G	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-4.232;QD=2.04;ReadPosRankSum=-0.380;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,2:0.10:20
chr19	8998924	rs80322265	A	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	8999383	rs79909361	A	G	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=21.098;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-7.750;QD=8.09;ReadPosRankSum=1.968;SOR=1.978;set=HC	GT:AD:AF:DP	0/1:150,49:0.25:199
chr19	8999386	rs77049866	A	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=25.072;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.565;QD=8.07;ReadPosRankSum=1.266;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:152,52:0.25:204
chr19	8999429	.	G	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=34.559;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-1.607;QD=4.30;ReadPosRankSum=2.566;SOR=2.689;set=HC	GT:AD:AF:DP	0/1:209,44:0.17:253
chr19	8999438	rs77891947	A	T	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=42.559;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-3.154;QD=6.94;ReadPosRankSum=1.789;SOR=2.753;set=HC	GT:AD:AF:DP	0/1:198,56:0.22:254
chr19	8999449	rs76798407	G	T	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=48.852;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-2.725;QD=6.67;ReadPosRankSum=-0.943;SOR=2.956;set=HC	GT:AD:AF:DP	0/1:196,56:0.22:252
chr19	8999453	rs11085765	C	T	4067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=45.547;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=6.386;QD=16.47;ReadPosRankSum=2.387;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:62,185:0.75:247
chr19	8999675	rs11085766	A	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	9000169	.	C	T	909.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.607;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=10.765;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-9.869;QD=6.89;ReadPosRankSum=-3.691;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:105,27:0.20:132
chr19	9000170	.	A	G	993.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.670;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=12.654;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-10.023;QD=7.36;ReadPosRankSum=-3.591;SOR=1.861;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr19	9000185	.	A	G	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=14.401;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-10.548;QD=7.45;ReadPosRankSum=-1.910;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr19	9000187	.	C	T	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=16.211;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-10.722;QD=7.33;ReadPosRankSum=-1.989;SOR=1.963;set=HC	GT:AD:AF:DP	0/1:124,38:0.23:162
chr19	9000194	.	G	A	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=21.755;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-11.006;QD=8.35;ReadPosRankSum=-2.140;SOR=2.162;set=HC	GT:AD:AF:DP	0/1:125,42:0.25:167
chr19	9000205	.	C	A	631.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=25.926;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-11.444;QD=3.74;ReadPosRankSum=-2.808;SOR=2.345;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr19	9000206	rs4994075	A	G	631.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=25.926;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-11.444;QD=3.74;ReadPosRankSum=-2.857;SOR=2.345;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr19	9000326	rs35743385	G	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	9001822	rs12976111	A	G	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	9001833	rs12976122	A	G	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	9001833	.	ATG	GTA	2525	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=58.95;NF=37;NR=37;PP=2525;QD=20;SC=GTACTCACTCATGGGTCCAGA;SbPval=0.53;Source=Platypus;TC=74;TCF=37;TCR=37;TR=74;WE=9001843;WS=9001812;set=Platypus	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	9001835	rs12985778	G	A	6540.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	9001986	rs12461757	C	A	568.78	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr19	9002113	rs12462672	A	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	9002493	rs77972891	T	C	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=5.494;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-10.883;QD=7.28;ReadPosRankSum=1.017;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:117,67:0.36:184
chr19	9002504	rs78327556	T	C	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=7.759;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-11.170;QD=6.35;ReadPosRankSum=2.288;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:129,64:0.33:193
chr19	9002519	rs150783178	G	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=13.600;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-11.906;QD=5.39;ReadPosRankSum=4.083;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:146,58:0.28:204
chr19	9002576	rs80214581	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=9.549;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-13.921;QD=1.24;ReadPosRankSum=-2.640;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:200,38:0.16:238
chr19	9002587	rs201053591	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=11.737;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-14.910;QD=2.39;ReadPosRankSum=-4.481;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:213,34:0.14:247
chr19	9002597	.	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=12.155;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-15.021;QD=1.46;ReadPosRankSum=-4.524;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:229,26:0.10:255
chr19	9003217	rs60430468	GA	G	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	9003618	rs11085776	C	T	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr19	9003645	rs11085777	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr19	9003706	rs11085778	T	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	9003749	rs11085779	G	T	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	9005041	rs62118260	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	9005674	rs4804091	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr19	9005719	rs4804375	A	G	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	9006370	rs79341062	A	G	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=28.276;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-6.584;QD=3.54;ReadPosRankSum=-0.648;SOR=2.623;set=HC	GT:AD:AF:DP	0/1:120,42:0.26:162
chr19	9006463	rs11668219	C	G	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	9007748	rs11673136	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	9009205	.	C	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-6.462;QD=7.24;ReadPosRankSum=-0.064;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr19	9009206	.	A	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-6.606;QD=6.90;ReadPosRankSum=0.229;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr19	9009211	.	A	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-7.165;QD=6.42;ReadPosRankSum=0.587;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr19	9009215	.	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-7.165;QD=6.37;ReadPosRankSum=0.651;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr19	9009218	.	T	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-7.231;QD=6.06;ReadPosRankSum=0.733;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr19	9009223	.	A	G	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-7.550;QD=5.46;ReadPosRankSum=1.334;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr19	9009228	rs36189670	G	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-7.914;QD=4.77;ReadPosRankSum=1.774;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr19	9009239	.	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-8.518;QD=6.43;ReadPosRankSum=0.293;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr19	9009244	.	T	C	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-9.089;QD=5.27;ReadPosRankSum=1.221;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:78,19:0.20:97
chr19	9009254	rs375943736	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-10.514;QD=3.71;ReadPosRankSum=2.122;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr19	9009570	rs80323209	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-6.493;QD=4.35;ReadPosRankSum=-2.407;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr19	9009581	.	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=4.838;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-7.634;QD=3.17;ReadPosRankSum=-0.771;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr19	9009582	rs200548160	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-7.688;QD=3.13;ReadPosRankSum=-0.719;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr19	9009627	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=5.240;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-10.277;QD=0.48;ReadPosRankSum=0.556;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:98,9:0.08:107
chr19	9009630	.	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=5.199;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-10.326;QD=0.37;ReadPosRankSum=0.372;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:99,9:0.08:108
chr19	9009851	rs75371087	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	9010685	.	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=21.581;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-11.141;QD=0.30;ReadPosRankSum=-0.544;SOR=2.914;set=HC	GT:AD:AF:DP	0/1:224,19:0.08:243
chr19	9010688	.	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=21.583;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-11.066;QD=0.34;ReadPosRankSum=-0.613;SOR=2.897;set=HC	GT:AD:AF:DP	0/1:221,19:0.08:240
chr19	9010693	.	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=24.317;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-10.400;QD=0.31;ReadPosRankSum=-0.456;SOR=2.946;set=HC	GT:AD:AF:DP	0/1:222,19:0.08:241
chr19	9010694	.	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=24.565;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-10.400;QD=0.34;ReadPosRankSum=-0.375;SOR=2.944;set=HC	GT:AD:AF:DP	0/1:222,19:0.08:241
chr19	9010720	rs73005893	A	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:94,133:0.59:227
chr19	9010743	.	G	GC	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-7.591;QD=0.66;ReadPosRankSum=-2.886;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:182,20:0.10:202
chr19	9010748	.	A	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-6.956;QD=0.55;ReadPosRankSum=-2.639;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:177,16:0.08:193
chr19	9010751	rs115945635	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:118,72:0.38:190
chr19	9011365	rs145364810	C	T	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr19	9012813	rs4992696	G	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-8.615;QD=2.53;ReadPosRankSum=-3.166;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:162,18:0.10:180
chr19	9012816	rs4992695	G	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=7.157;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-8.402;QD=2.71;ReadPosRankSum=-3.901;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:172,25:0.13:197
chr19	9012819	rs4992694	T	A	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=8.107;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-13.241;QD=9.99;ReadPosRankSum=-5.612;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:154,56:0.27:210
chr19	9012820	rs191266355	G	A	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=6.253;QD=6.63;ReadPosRankSum=2.179;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:133,82:0.38:215
chr19	9012823	rs4992693	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=8.733;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-6.262;QD=2.69;ReadPosRankSum=-3.546;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:206,34:0.14:240
chr19	9012825	.	A	T	770.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=3.443;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-7.312;QD=3.02;ReadPosRankSum=-2.902;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:222,33:0.13:255
chr19	9012826	.	T	C	1028.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-9.205;QD=4.22;ReadPosRankSum=-3.288;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:206,38:0.16:244
chr19	9012832	.	T	G	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-8.028;QD=3.01;ReadPosRankSum=-3.634;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:247,46:0.16:293
chr19	9012840	rs4992692	G	A	3230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-11.958;QD=10.13;ReadPosRankSum=-5.201;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:196,123:0.39:319
chr19	9012848	rs112005168	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-8.836;QD=0.99;ReadPosRankSum=-0.660;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:309,59:0.16:368
chr19	9012894	.	A	AG	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=36.627;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-7.046;QD=1.48;ReadPosRankSum=-1.956;SOR=3.062;set=HC	GT:AD:AF:DP	0/1:294,35:0.11:329
chr19	9012897	.	AG	A	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=42.987;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-8.028;QD=1.58;ReadPosRankSum=-3.634;SOR=3.293;set=HC	GT:AD:AF:DP	0/1:272,35:0.11:307
chr19	9012905	.	T	TG	1508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-9.683;QD=5.41;ReadPosRankSum=1.492;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:225,54:0.19:279
chr19	9012908	rs77209900	A	G	574.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=52.012;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-8.676;QD=2.08;ReadPosRankSum=-6.029;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:244,32:0.12:276
chr19	9012909	.	G	A	577.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=52.012;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-8.676;QD=2.09;ReadPosRankSum=-6.092;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:244,32:0.12:276
chr19	9012910	.	GT	G	1520.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-9.866;QD=5.51;ReadPosRankSum=0.186;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:222,54:0.20:276
chr19	9012913	.	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=52.380;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-8.614;QD=2.22;ReadPosRankSum=-6.679;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:236,32:0.12:268
chr19	9012918	rs75899847	C	T	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-9.424;QD=5.93;ReadPosRankSum=-0.973;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:209,53:0.20:262
chr19	9012930	rs76135098	C	T	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=11.750;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-12.142;QD=6.36;ReadPosRankSum=-4.213;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:156,47:0.23:203
chr19	9012937	.	A	G	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=10.937;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-11.479;QD=6.80;ReadPosRankSum=-4.321;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:146,42:0.22:188
chr19	9012947	.	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=10.461;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-10.431;QD=7.11;ReadPosRankSum=-5.318;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:129,36:0.22:165
chr19	9014551	rs12459127	T	C	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-2.429;QD=18.10;ReadPosRankSum=-0.525;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr19	9014569	rs12462963	A	G	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-0.820;QD=15.79;ReadPosRankSum=0.796;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr19	9015364	rs202219452	T	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-4.272;QD=0.44;ReadPosRankSum=0.516;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:253,22:0.08:275
chr19	9015374	.	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-4.476;QD=0.26;ReadPosRankSum=2.376;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:272,22:0.07:294
chr19	9015382	rs370037933	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-4.465;QD=0.23;ReadPosRankSum=2.336;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:271,22:0.08:293
chr19	9015392	rs200412559	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-5.133;QD=0.22;ReadPosRankSum=0.984;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:274,22:0.07:296
chr19	9015436	rs34959018	T	TG	3833.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr19	9015438	rs34556045	A	C	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,100:0.48:207
chr19	9018476	rs112059772	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-9.835;QD=0.87;ReadPosRankSum=-1.228;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:98,11:0.10:109
chr19	9018479	rs111639147	G	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.416;QD=0.89;ReadPosRankSum=-0.661;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:100,10:0.09:110
chr19	9019306	.	T	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=11.903;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-8.451;QD=3.14;ReadPosRankSum=-3.462;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:134,22:0.14:156
chr19	9019313	.	C	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=20.543;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-8.776;QD=3.16;ReadPosRankSum=-3.160;SOR=2.634;set=HC	GT:AD:AF:DP	0/1:125,21:0.14:146
chr19	9019315	.	A	C	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=17.905;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-8.809;QD=3.11;ReadPosRankSum=-2.561;SOR=2.578;set=HC	GT:AD:AF:DP	0/1:126,21:0.14:147
chr19	9019320	.	C	G	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=18.031;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-8.544;QD=3.46;ReadPosRankSum=-2.036;SOR=2.574;set=HC	GT:AD:AF:DP	0/1:118,21:0.15:139
chr19	9019348	.	A	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=16.187;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-7.905;QD=5.71;ReadPosRankSum=1.201;SOR=2.292;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr19	9019352	.	T	C	747.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.155;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=16.187;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-7.905;QD=5.71;ReadPosRankSum=1.405;SOR=2.292;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr19	9019353	.	G	T	747.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.833;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=18.489;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-7.801;QD=5.84;ReadPosRankSum=1.083;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr19	9019371	.	A	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.177;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=38.600;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-7.420;QD=6.03;ReadPosRankSum=0.488;SOR=4.571;set=HC	GT:AD:AF:DP	0/1:83,22:0.21:105
chr19	9019374	.	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.703;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=35.219;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-7.515;QD=6.20;ReadPosRankSum=0.458;SOR=4.377;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr19	9019376	.	A	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.693;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=32.578;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-7.532;QD=6.29;ReadPosRankSum=0.389;SOR=4.264;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr19	9019377	.	A	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.217;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=32.853;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-7.488;QD=6.04;ReadPosRankSum=0.307;SOR=4.310;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr19	9019378	.	T	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.730;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=32.853;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-7.488;QD=6.04;ReadPosRankSum=0.326;SOR=4.310;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr19	9019605	rs12981679	C	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	9020211	rs11882373	C	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	9021275	rs7246797	G	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.695;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	9024297	rs57038126	G	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr19	9024758	rs1862463	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	9024871	rs62118272	C	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr19	9025584	rs77811999	T	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=13.019;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-9.271;QD=3.66;ReadPosRankSum=-4.790;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr19	9025604	rs200791776	A	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-9.121;QD=3.79;ReadPosRankSum=-1.774;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:120,42:0.26:162
chr19	9025669	rs200046834	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.970;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=53.007;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-10.135;QD=2.14;ReadPosRankSum=-1.525;SOR=6.108;set=HC	GT:AD:AF:DP	0/1:155,21:0.12:176
chr19	9025671	.	G	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.125;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=52.647;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-9.859;QD=2.14;ReadPosRankSum=-1.725;SOR=5.988;set=HC	GT:AD:AF:DP	0/1:152,20:0.12:172
chr19	9025673	.	G	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.247;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=46.513;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-9.597;QD=2.06;ReadPosRankSum=-1.874;SOR=5.836;set=HC	GT:AD:AF:DP	0/1:150,19:0.11:169
chr19	9025676	.	GGC	G	296.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.126;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=49.689;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-9.687;QD=1.73;ReadPosRankSum=-2.348;SOR=5.865;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chr19	9025679	.	A	AAG	296.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.816;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=49.934;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-9.536;QD=1.78;ReadPosRankSum=-2.611;SOR=5.888;set=HC	GT:AD:AF:DP	0/1:148,19:0.11:167
chr19	9025682	.	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.330;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=44.203;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-9.555;QD=1.96;ReadPosRankSum=-2.796;SOR=5.650;set=HC	GT:AD:AF:DP	0/1:147,17:0.10:164
chr19	9025686	.	A	G	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.537;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=41.116;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-9.224;QD=1.52;ReadPosRankSum=-3.080;SOR=5.506;set=HC	GT:AD:AF:DP	0/1:144,16:0.10:160
chr19	9025689	.	A	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=38.269;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-8.893;QD=1.07;ReadPosRankSum=-3.140;SOR=5.383;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chr19	9025691	.	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.415;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=38.015;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-8.803;QD=1.13;ReadPosRankSum=-3.496;SOR=5.351;set=HC	GT:AD:AF:DP	0/1:139,15:0.10:154
chr19	9025695	.	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.237;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=34.793;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-8.495;QD=1.19;ReadPosRankSum=-3.520;SOR=5.166;set=HC	GT:AD:AF:DP	0/1:139,14:0.09:153
chr19	9025698	.	T	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.060;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=31.974;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-8.817;QD=0.63;ReadPosRankSum=-3.349;SOR=5.029;set=HC	GT:AD:AF:DP	0/1:139,13:0.09:152
chr19	9025700	.	T	G	92.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.003;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=32.099;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-8.725;QD=0.62;ReadPosRankSum=-3.659;SOR=5.052;set=HC	GT:AD:AF:DP	0/1:136,13:0.09:149
chr19	9025701	.	T	TAGGG	86.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.928;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=31.777;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-8.725;QD=0.58;ReadPosRankSum=-3.777;SOR=4.995;set=HC	GT:AD:AF:DP	0/1:136,13:0.09:149
chr19	9025776	rs370117227	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.519;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	9026257	rs62118274	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr19	9026318	rs62118275	A	G	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,91:0.50:182
chr19	9027790	rs61097680	C	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	9048342	rs10854118	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	9048895	rs2012761	A	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr19	9049726	rs11670328	G	A	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr19	9056982	rs11670318	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:126,93:0.42:219
chr19	9057098	rs61744612	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr19	9057408	rs1423051	A	G	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	9057687	rs1895364	A	G	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	9057721	rs2216662	C	T	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	9058907	rs1833777	G	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr19	9058942	rs1833778	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr19	9059162	rs78704866	T	C	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:131,164:0.56:295
chr19	9059808	rs7508222	A	G	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	9060125	rs12972088	G	A	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=1.220;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:73,53:0.42:126
chr19	9060128	rs61734212	G	C	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=1.475;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:73,55:0.43:128
chr19	9060416	rs61747881	G	A	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr19	9060605	rs2194168	G	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	9060656	rs2216663	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr19	9060812	rs1820099	T	C	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	9061053	rs114396204	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,80:0.52:154
chr19	9062544	rs2547063	T	G	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	9063678	rs2547064	T	G	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:145,101:0.41:246
chr19	9063935	rs2252675	G	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr19	9064913	rs79087669	G	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:135,95:0.41:230
chr19	9065632	rs1867691	T	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr19	9069892	rs1862460	A	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr19	9070194	rs1344572	A	G	10079.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	9070225	rs1559172	G	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	9070837	rs2547067	G	A	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	9071763	rs10422567	T	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	9072296	rs7254970	G	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr19	9072313	rs2121133	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	9072742	rs2591590	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,70:0.44:159
chr19	9074765	rs77727786	C	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr19	9074950	rs2591591	G	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr19	9074957	rs115596454	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr19	9075217	rs2547068	T	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr19	9075346	rs2591592	T	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	9075584	rs2547069	T	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr19	9075635	rs2547070	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr19	9075737	rs2547071	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.411;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:35,42:0.55:77
chr19	9075969	rs2591593	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr19	9076083	rs2547072	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr19	9076163	rs2547073	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,64:0.46:139
chr19	9076278	rs953551	G	A	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:139,126:0.48:265
chr19	9076728	rs2591594	C	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,102:0.47:218
chr19	9076858	rs2547074	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr19	9076929	rs2547075	T	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr19	9076950	rs2547076	C	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr19	9076991	rs2591595	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr19	9077060	rs2591596	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr19	9077264	rs1862461	T	G	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,98:0.46:213
chr19	9077436	rs1862462	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr19	9077803	rs2591597	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr19	9077902	rs2547077	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	9077984	rs2547078	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=-1.718;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	9080343	.	GAAAGA	G	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=2.508;QD=5.77;ReadPosRankSum=-2.258;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	9080462	rs2547065	C	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr19	9083143	rs7245949	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,59:0.50:119
chr19	9083174	rs7245960	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr19	9083751	rs75665802	C	T	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr19	9084183	rs1609460	G	A	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.605;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr19	9084216	rs1609459	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr19	9084299	rs1609458	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr19	9086123	rs10402812	A	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr19	9087615	rs1596798	T	A	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	9088017	rs1596797	T	G	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:113,96:0.46:209
chr19	9089965	rs116765650	G	A	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:138,124:0.47:262
chr19	9090531	rs12976721	T	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.187;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:43,52:0.55:95
chr19	9212864	rs4804399	A	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	9213396	rs7247751	G	A	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=2.367;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:95,101:0.52:196
chr19	9225685	rs2195951	T	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:78,114:0.59:192
chr19	9226017	rs2217657	C	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:106,78:0.42:184
chr19	9226192	rs6511874	A	G	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr19	9226540	rs36095111	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.448;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	9236698	rs111867493	G	GATGGT	152.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	9236886	rs10424352	A	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:150,113:0.43:263
chr19	9237435	rs10407484	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	9237542	rs10414255	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:100,81:0.45:181
chr19	9237719	rs151331809	TCTTTCTTC	T	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=7.732;MLEAC=1;MLEAF=0.500;MQ=63.07;MQRankSum=3.552;QD=14.29;ReadPosRankSum=1.000;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	9251113	rs74779691	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:132,94:0.42:226
chr19	9266874	rs139210933	CTG	C	1477.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	9268261	rs3829682	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	9296664	rs56246934	T	C	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:80,94:0.54:174
chr19	9325116	rs5020278	G	A	9450.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr19	9325252	rs61729907	G	A	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	9346427	rs1968136	T	C	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:203,189:0.48:392
chr19	9346599	rs1985937	C	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:119,112:0.48:231
chr19	9362343	rs2240927	C	T	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	9362443	rs2240928	C	T	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	9362799	rs917707	T	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr19	9407634	rs60111631	T	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	9408163	rs56161262	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=-1.579;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	9408658	rs73920733	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr19	9408759	rs73504738	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	9408815	rs74782357	T	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.42;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	9415597	rs34867149	C	CA	37.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.65;ReadPosRankSum=-0.319;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	9434930	rs10411624	T	C	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:119,127:0.52:246
chr19	9435294	.	ACC	A,AC	472.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,8,11:0.42,0.58:19
chr19	9435320	rs368039177	GA	G	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.226;QD=4.45;ReadPosRankSum=-0.858;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	9448917	rs8113427	T	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	9449149	rs8110197	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=-1.981;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	9449337	rs8110584	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	9452026	rs55837495	ACT	A	1252.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr19	9489132	rs2304110	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr19	9490358	rs12461520	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	9490814	rs2217652	C	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,107:0.48:221
chr19	9491210	rs1347165	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	9491594	.	G	C	1455.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:109,75:0.41:184
chr19	9492141	rs3826783	C	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:95,115:0.55:210
chr19	9492370	rs2230752	A	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr19	9524185	rs2241356	A	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr19	9578345	rs144505939	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr19	9582092	rs28393052	T	A	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.827;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	9646739	rs888872	C	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	9721401	rs28445940	A	T	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:119,99:0.45:218
chr19	9728350	rs10420371	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:101,79:0.44:180
chr19	9764668	rs57141679	A	AT	217.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=2.355;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr19	9767443	.	G	A	289.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	9768924	rs10417926	CA	TG	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;JOINED;set=Intersection	GT:AD:AF:DP	0/1:120,88:0.42:208
chr19	9771286	rs111723152	G	GA	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.179;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.472;QD=12.87;ReadPosRankSum=-0.229;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	9801668	rs113307466	T	C	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.919;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:95,113:0.54:208
chr19	9804678	rs10407571	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	9868278	rs10420364	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:70,71:0.50:141
chr19	9868371	rs56872664	C	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:131,112:0.46:243
chr19	9868404	rs10414485	C	T	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:100,121:0.55:221
chr19	9873820	rs60184154	CA	C	128.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.312;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	9939092	rs10413737	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr19	9958878	rs2010457	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	9964823	rs8111802	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	9968638	rs115290426	C	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	10071063	rs10406152	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	10071594	rs35503647	TG	T	1206.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr19	10071634	rs918542	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	10077931	rs3786698	C	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	10078005	rs148984679	G	GC	851.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr19	10079044	rs45476799	C	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chr19	10079093	rs3815746	C	T	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.345;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:92,82:0.47:174
chr19	10080140	rs2277966	C	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	10080281	rs62638754	A	G	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:185,134:0.42:319
chr19	10080619	rs57674179	A	AG	894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-0.457;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr19	10080686	rs116024498	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.401;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	10081193	rs62104327	T	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-0.529;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	10081200	rs62104328	T	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.191;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	10081276	rs1895371	C	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr19	10081322	rs61729461	G	A	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-1.240;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:85,56:0.40:141
chr19	10081501	rs2287816	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr19	10081540	rs371689293	CTG	C,CATG	604.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	0/1:0.47:36
chr19	10081541	.	TG	CC	1092	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=4;MMLQ=27;MQ=60.0;NF=5;NR=9;SC=CGGGAGCATCTGCAGGGGCCT;SbPval=0.82;Source=Platypus;TC=33;TCF=15;TCR=18;TR=14;WE=10081550;set=Platypus	GT:AD:AF:DP	1/0:19,14:0.42:33
chr19	10081542	.	G	GACC	604.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.059;QD=17.79;ReadPosRankSum=1.017;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	10083510	.	CAA	C,CA	311.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=19.48;SOR=1.244;set=HC	GT:AD:AF:DP	1/2:0,9,7:0.56,0.44:16
chr19	10084292	rs2287813	C	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	10084471	rs62638751	C	A	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:144,175:0.55:319
chr19	10084551	rs2287811	T	G	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	10089262	rs12610207	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	10091267	rs144086896	A	ATC,ATCTC	2280.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/2:0.13,0.87:54
chr19	10091294	.	TCACA	T,TCA	2986.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.213;QD=28.18;ReadPosRankSum=2.402;SOR=1.145;set=HC	GT:AD:AF:DP	1/2:4,15,87:0.14,0.82:106
chr19	10096482	rs11670705	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr19	10096616	rs28539329	G	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:106,98:0.48:204
chr19	10096650	rs1862474	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr19	10096680	rs201986427	G	GA	1396.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr19	10096681	rs11670525	G	A	1405.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=-0.620;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:40,38:0.49:78
chr19	10096686	rs1862473	G	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	10097187	rs60604169	G	GC	14719.73	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:2,466:1.00:468
chr19	10097443	rs111955359	T	TA,TAA	1470.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=-0.179;QD=19.87;ReadPosRankSum=0.335;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:4,15,55:0.20,0.74:74
chr19	10097536	rs8113693	G	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	10099744	rs11879755	C	T	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	10099748	rs11883111	T	C	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	10099910	rs2287805	C	T	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr19	10099964	rs116064043	G	A	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:246,224:0.48:470
chr19	10100061	rs2287804	C	A	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,378:0.99:380
chr19	10102177	rs7248892	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	10102375	rs10411233	G	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr19	10102563	rs7251451	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.651;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr19	10102567	rs7251453	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	10102676	rs7252953	A	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	10102765	rs111742429	G	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr19	10103583	rs2010448	C	T	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	10103659	rs2010454	C	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:99,70:0.41:169
chr19	10104153	rs1974813	C	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,65:0.52:125
chr19	10104322	rs62638740	A	C	4438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.017;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:198,224:0.53:422
chr19	10106671	rs3745592	C	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:148,158:0.52:306
chr19	10106936	rs1559186	G	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	10107455	rs139398421	A	AAG	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	10108850	rs3745594	A	G	3943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=0.530;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:68,110:0.62:178
chr19	10108861	rs3745595	A	G	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr19	10108908	rs369704769	GCACA	G	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.210;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	10112058	rs8108105	A	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	10112346	rs2287803	T	C	9090.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	10112432	rs8100235	T	G	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:244,203:0.45:447
chr19	10116076	rs11085529	G	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	10129262	rs1644733	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=0.705;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	10131401	rs2233796	T	C	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:266,238:0.47:504
chr19	10131852	rs2255079	A	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.187;QD=4.58;ReadPosRankSum=-0.369;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	10131866	rs2016307	A	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	10131999	rs1644731	T	C	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:170,170:0.50:340
chr19	10165932	rs8113341	A	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	10169477	rs11667515	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:104,95:0.48:199
chr19	10192425	rs112439574	G	GGAA	1387.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.79;QD=38.55;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr19	10197488	rs139505689	G	GC	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=1.269;QD=7.95;ReadPosRankSum=1.082;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr19	10197770	rs200493899	G	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr19	10216977	rs2290686	T	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr19	10217338	rs11559189	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.369;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:61,33:0.35:94
chr19	10218030	rs1551570	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10218409	rs184113513	G	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:144,133:0.48:277
chr19	10221642	rs11559188	A	G	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:101,146:0.59:247
chr19	10222558	rs2010353	G	T	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	10225585	rs13343552	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr19	10226052	rs2305795	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10226256	rs7710	A	G	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:127,122:0.49:249
chr19	10226701	rs28510792	C	T	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.494;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:91,108:0.54:199
chr19	10244531	rs10423673	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	10245077	rs79999027	A	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	10251048	.	AT	A	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.806;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	10251367	rs10408180	G	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	10251747	rs2290684	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr19	10251998	rs148880472	A	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr19	10260084	rs10405146	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	10265248	rs2114724	T	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:108,141:0.57:249
chr19	10265312	rs721186	T	C	7567.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	10266499	rs28607407	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr19	10267077	rs2228611	T	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:74,102:0.58:176
chr19	10270746	rs3079962	GA	G	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:4,124:0.97:128
chr19	10273296	rs5827088	GA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=8.157;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.332;QD=2.22;ReadPosRankSum=-0.603;SOR=2.129;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	10284643	rs142475332	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr19	10288072	.	G	A	82	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=15;HapScore=2;MGOF=7;MMLQ=22;MQ=55.64;NF=0;NR=8;PP=82;QD=14.5964015684;SC=GCATTAAAAAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=6;TCR=11;TR=8;WE=10288080;WS=10288062;set=Platypus	GT:AD:AF:DP	1/0:9,8:0.47:17
chr19	10291322	.	T	TTCATCA	408.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	10334443	rs2116941	A	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10334532	rs116191851	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	10334663	rs2116942	T	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	10369086	rs17000211	C	T	5081.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:365,264:0.42:629
chr19	10381827	rs5490	A	C	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	10385417	rs5030351	C	T	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	10385540	rs5491	A	T	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	10385743	rs5030352	C	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	10394917	rs5494	C	T	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:184,211:0.53:395
chr19	10400810	rs11575073	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-1.356;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr19	10404227	rs2569703	C	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr19	10404394	rs10418913	G	A	4218.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:192,212:0.52:404
chr19	10405865	rs10402760	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	10407169	rs710845	G	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.500;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr19	10418784	rs281416	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	10419130	rs281417	C	T	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:80,83:0.51:163
chr19	10421385	rs281418	G	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	10425986	rs368835	A	G	200.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10425994	.	G	GTTTT	120.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.25;ReadPosRankSum=2.189;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	10425995	rs2358583	G	T	129.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.105;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.42;ReadPosRankSum=0.751;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	10426422	rs378395	A	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.491;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:83,55:0.40:138
chr19	10426628	rs395782	T	C	3831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=1.568;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:218,193:0.47:411
chr19	10429120	rs281427	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10431799	rs281425	G	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr19	10444603	rs2230399	C	G	4421.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:264,221:0.46:485
chr19	10444826	rs2278442	G	A	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:281,259:0.48:540
chr19	10446568	rs2304237	T	C	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,95:0.50:191
chr19	10449252	rs7257871	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	10449358	rs7258015	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr19	10449392	rs2304240	A	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	10449665	rs3176768	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr19	10450285	rs281414	G	A	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:100,110:0.52:210
chr19	10467565	rs12720307	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	10472080	rs12720278	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.776;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr19	10488819	rs12720224	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr19	10502063	rs1057487	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	10504136	rs28382792	G	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr19	10506440	rs13343720	C	T	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:55,84:0.60:139
chr19	10514264	rs28382772	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:114,92:0.45:206
chr19	10514299	rs28382769	G	T	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr19	10527713	rs143423742	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:77,53:0.41:130
chr19	10541683	rs28610998	C	G	2338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.476;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:211,137:0.39:348
chr19	10561261	.	A	AT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.044;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr19	10568534	rs60627746	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	10572429	rs140529599	TGAGTCCCA	T	725.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	10577843	rs1051738	C	A	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:117,153:0.57:270
chr19	10600442	rs1048290	G	C	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:125,119:0.49:244
chr19	10602957	rs139922175	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr19	10610236	rs1048287	A	G	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:204,137:0.40:341
chr19	10625067	rs6511701	A	C	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	10654757	rs10423349	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	10659659	rs2304165	C	T	4575.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:204,234:0.53:438
chr19	10659804	rs35786570	C	CT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.939;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr19	10664632	rs3087689	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr19	10665691	rs10419405	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-0.927;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	10665695	rs10413128	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.74;ReadPosRankSum=-0.502;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	10665912	rs6146467	C	CCCGCCCTGCCCGCAGCGCACCTGGCT	3183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=7.521;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.101;QD=17.12;ReadPosRankSum=2.760;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:110,76:0.41:186
chr19	10665951	rs7251746	G	A	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-1.060;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:131,110:0.46:241
chr19	10668383	rs3745256	T	C	4758.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:350,260:0.43:610
chr19	10668452	rs3745255	A	G	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:278,172:0.38:450
chr19	10668953	rs875569	G	A	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:117,117:0.50:234
chr19	10669032	rs892084	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	10670184	rs3826709	C	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:147,144:0.49:291
chr19	10670992	rs3745249	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:95,95:0.50:190
chr19	10672493	rs12984043	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:85,60:0.41:145
chr19	10676343	rs3745246	A	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	10676423	rs3745245	G	A	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.95;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	10676487	rs34864064	G	GCC,GCCC	7998.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=-0.130;QD=29.52;ReadPosRankSum=2.137;SOR=0.420;set=HC	GT:AD:AF:DP	1/2:4,144,123:0.53,0.45:271
chr19	10676537	rs3745244	C	A	4822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.269;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:223,239:0.52:462
chr19	10676681	rs3218222	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	10679067	rs33926515	GAGA	G	3677.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	10679240	rs1968445	C	G	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	10685859	rs1560712	G	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	10687757	rs7252007	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	10689691	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=6.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.189;SOR=1.954;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	10690557	rs10426276	G	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	10713212	rs115559926	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr19	10737088	rs35379200	C	CT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.530;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	10738639	rs3087969	C	T	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	10741622	rs12710257	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	10741681	rs60016481	C	CA	981.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-1.414;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:31,76:0.71:107
chr19	10741907	rs12972963	A	G	18048.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,705:1.00:705
chr19	10742170	rs2288904	A	G	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	10742287	rs1560711	C	T	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	10742443	rs1560710	C	T	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	10742463	rs1560709	G	T	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr19	10745764	rs2163832	T	C	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	10748820	rs3859514	T	C	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	10751769	rs111569642	G	GA	426.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=0.000;QD=17.78;ReadPosRankSum=1.079;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr19	10751834	rs13346884	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	10752968	rs10405617	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	10793749	rs2738039	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	10794630	rs2229383	G	T	10573.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	10794793	rs892087	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	10818092	rs892085	G	A	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	10823071	rs75520636	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:87,67:0.44:154
chr19	10823850	rs139740339	C	T	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:133,146:0.52:279
chr19	10824435	rs35323929	CT	C	134.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.292;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	10883126	rs3826803	C	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	10897187	.	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr19	10961273	rs11085749	G	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,73:0.53:137
chr19	10970558	rs8100581	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	11019994	rs4804546	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	11031464	rs2288842	C	G	5994.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:265,293:0.53:558
chr19	11038843	rs892010	G	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	11097199	.	CGGCCCTGGCCCT	C	1684.73	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:104,91:0.47:195
chr19	11098397	rs149573400	G	A	8084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.471;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:329,406:0.55:735
chr19	11105608	rs7935	T	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:189,129:0.41:318
chr19	11105865	rs11881798	C	G	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr19	11106373	.	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.410;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	11106600	rs11672232	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.931;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr19	11106790	rs11669202	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr19	11107133	rs2304087	TG	CA	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;JOINED;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr19	11130195	rs11882440	G	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr19	11132315	rs75904516	G	A	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr19	11136215	rs2075021	C	G	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:188,174:0.48:362
chr19	11136315	rs2075022	C	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr19	11137173	rs35017701	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=38;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-1.489;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	11168896	rs8104480	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	11200475	rs17242766	C	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.508;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	11201665	rs144212607	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:84,68:0.45:152
chr19	11210912	rs2228671	C	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:153,103:0.40:256
chr19	11211079	rs3745678	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr19	11221454	rs2738442	T	C	15092.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr19	11221556	rs10401667	T	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:180,139:0.44:319
chr19	11224157	rs6413505	C	T	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:95,102:0.52:197
chr19	11224265	rs5930	A	G	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:151,181:0.55:332
chr19	11224491	rs1569372	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr19	11226944	rs4508523	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,79:0.51:154
chr19	11227480	rs2738447	A	C	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	11230650	.	G	GAAAC	429.73	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	11230672	rs62129100	A	G	879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=4.151;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:42,41:0.49:83
chr19	11233941	rs5927	A	G	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:385,304:0.44:689
chr19	11238473	rs2738459	A	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	11238548	rs2569538	A	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	11241904	rs6413503	G	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:106,90:0.46:196
chr19	11242307	rs2738464	G	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	11257756	rs71164155	C	CA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.37;ReadPosRankSum=0.011;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	11258638	rs8111157	G	A	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.405;QD=9.41;ReadPosRankSum=-1.976;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:115,109:0.49:224
chr19	11259744	rs111370680	G	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	11266491	rs79243325	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=2.828;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:80,59:0.42:139
chr19	11266584	rs892114	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	11277232	rs4804573	G	A	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.719;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:85,81:0.49:166
chr19	11283869	rs73504667	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-0.546;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:133,116:0.47:249
chr19	11285390	rs440677	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	11286525	rs113491499	G	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr19	11288976	rs139114831	A	AG	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	11303422	rs12972022	G	A	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:25,88:0.78:113
chr19	11303469	rs7254270	C	A	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:32,156:0.83:188
chr19	11303554	rs17616661	A	G	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:145,226:0.61:371
chr19	11303943	rs3745681	A	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:193,148:0.43:341
chr19	11304404	rs755237	C	T	5938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=2.029;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:248,293:0.54:541
chr19	11304498	rs755238	C	T	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:144,178:0.55:322
chr19	11305161	rs754529	A	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,89:0.55:161
chr19	11305245	rs754528	T	C	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:115,112:0.49:227
chr19	11310920	.	C	T	48	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=3;NR=1;PP=48;QD=20.6928031368;SC=CCATCCTGTACCTGTCCTGGT;SbPval=0.63;Source=Platypus;TC=9;TCF=7;TCR=2;TR=4;WE=11310928;WS=11310910;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	11313256	rs3745682	G	A	7196.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:349,371:0.52:720
chr19	11314807	rs3217390	CTGGGGATGAGGAG	C	1317.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr19	11323671	rs112685241	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	11326629	rs10403991	C	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	11339760	rs146267208	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	11346252	rs6511729	A	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	11347493	rs737337	T	C	2602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-1.029;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:192,143:0.43:335
chr19	11348911	rs7252937	A	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,110:0.62:177
chr19	11350340	rs892066	C	G	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	11350981	rs10402022	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	11363146	rs8113582	A	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr19	11406839	rs453766	C	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	11406952	rs374409	A	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	11409039	rs13344148	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	11409061	rs377665	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	11409494	rs423304	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	11409684	rs422496	A	G	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	11411868	rs420703	C	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	11417200	rs322151	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.592;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	11436221	rs12981706	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr19	11436302	rs56363898	A	AG	2060.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	11436339	rs28453057	C	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	11437436	rs113307417	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.065;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	11437529	rs112381962	C	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.507;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	11447769	.	C	CA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.004;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr19	11489049	rs35423344	G	C	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:234,177:0.43:411
chr19	11507833	rs316502	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	11507855	rs3816865	G	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,82:0.54:152
chr19	11510998	rs10424035	G	A	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr19	11512826	rs317910	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,56:0.43:131
chr19	11512956	rs147985412	C	CAGGGTCA	1778.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr19	11516007	rs10416704	T	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	11526759	rs160838	G	A	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.446;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr19	11526765	rs167479	G	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.574;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	11534503	.	TGG	T,TG	1052.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=61;set=Intersection	GT:AF:DP	1/2:0.18,0.73:49
chr19	11541685	rs34095	G	A	11410.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,445:1.00:447
chr19	11541712	rs34094	T	C	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	11558052	rs160840	T	C	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	11558240	rs186375	T	C	10836.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr19	11558340	rs3217229	AGAG	A	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=5.181;QD=2.14;ReadPosRankSum=0.134;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:192,29:0.13:221
chr19	11565284	rs35334288	TTC	T	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=3.13;ReadPosRankSum=2.294;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr19	11568022	rs311788	A	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr19	11568067	rs311787	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	11591324	.	A	AC	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=2.950;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.472;QD=5.93;ReadPosRankSum=-0.493;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:63,30:0.32:93
chr19	11598118	rs200934959	TCGATGCCTG	T	5297.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:159,139:0.47:298
chr19	11598483	rs311805	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:217,164:0.43:381
chr19	11598793	.	T	TTTTATTTTATTTATTTATTTA	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=0.641;QD=9.85;ReadPosRankSum=1.364;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	11618421	rs73512787	T	G	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:212,176:0.45:388
chr19	11623849	rs12609928	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	11624176	rs8113534	G	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr19	11624491	rs4804168	C	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	11660012	rs8100751	T	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-1.010;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	11660538	rs10401174	G	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:175,114:0.39:289
chr19	11687132	rs2229532	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.135;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr19	11687644	rs34375794	G	A	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:160,127:0.44:287
chr19	11687817	rs73496603	C	T	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:213,195:0.48:408
chr19	11708361	rs11551815	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,62:0.46:134
chr19	11725823	.	A	G	114	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=4;MGOF=7;MMLQ=24;MQ=60.0;NF=2;NR=3;PP=114;QD=29.7542425094;SC=GTGCAGTGGCACAATCTTGGC;SbPval=0.5;Source=Platypus;TC=12;TCF=6;TCR=6;TR=5;WE=11725844;WS=11725813;set=Platypus	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	11725836	rs113216025	A	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	11727384	rs4411616	G	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	11727503	rs4545929	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	11795897	rs286298	C	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	11796869	rs286299	G	T	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	11836295	rs73500533	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr19	11849835	rs7249221	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	11878095	rs384148	T	G	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.638;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:83,67:0.45:150
chr19	11891003	rs799193	G	A	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	11918093	rs71166630	AT	A	318.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	11941221	rs424132	T	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:123,121:0.50:244
chr19	11941256	rs421355	A	G	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:107,96:0.47:203
chr19	11941363	rs2545810	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr19	11941532	rs35392612	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr19	11941617	rs410885	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	11942362	rs427880	A	G	8310.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	11942615	rs394416	A	C	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:3,181:0.98:184
chr19	11942771	rs436411	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:157,128:0.45:285
chr19	11943697	rs400106	G	A	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	11943823	rs375049	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr19	11943852	rs3745669	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr19	11998777	rs3810314	C	T	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	12014820	rs28588743	C	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr19	12015545	rs111999105	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr19	12024208	rs34363657	C	CT	449.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=2.099;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr19	12037544	rs279236	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr19	12057916	rs58336952	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,90:0.59:152
chr19	12058572	rs192494	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	12141029	rs376771532	GTTTATTTT	G	1137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=0.329;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:58,32:0.36:90
chr19	12154521	rs148857000	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr19	12155320	rs75719391	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:111,78:0.41:189
chr19	12157334	rs4804176	T	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	12185102	rs7250239	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr19	12186148	rs10424893	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chr19	12186611	rs7259684	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr19	12186761	rs7259845	A	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:103,68:0.40:171
chr19	12186857	rs6511763	G	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr19	12187210	rs6511764	A	G	2959.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:139,140:0.50:279
chr19	12187315	rs201088213	TCA	T	6586.73	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:214,181:0.46:395
chr19	12187861	rs10426017	T	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,95:0.60:158
chr19	12187907	rs55703333	G	A	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr19	12191233	rs17001758	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,68:0.53:129
chr19	12222381	rs1866382	C	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	12222861	rs1975349	T	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	12247731	rs12608894	A	G	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,135:0.54:252
chr19	12253327	rs3760779	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr19	12256912	rs7258368	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr19	12267292	rs269823	T	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	12267531	rs269824	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr19	12274046	rs114513325	C	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr19	12296819	rs12610074	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr19	12297365	rs271196	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.909;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr19	12297369	rs8111785	G	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.089;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr19	12358722	rs2438562	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr19	12359265	rs2438563	T	C	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:82,95:0.54:177
chr19	12360647	rs10411611	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	12383090	rs112612717	T	C	331.98	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr19	12383540	rs56056044	G	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr19	12384580	rs11879168	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:107,102:0.49:209
chr19	12385749	rs2459040	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	12402112	rs2458999	C	T	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	12405552	rs386901	T	C	17895.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.86;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,692:1.00:692
chr19	12444388	rs61744368	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr19	12462641	rs115425667	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	12491498	rs4804664	C	T	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:208,178:0.46:386
chr19	12491779	rs17706075	T	C	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:175,155:0.47:330
chr19	12492026	rs74795247	C	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.537;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr19	12494612	rs10418011	T	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=0.497;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	12494621	rs10412448	A	G	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=0.340;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	12501435	rs8112445	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:110,76:0.41:186
chr19	12502457	rs4804669	A	G	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	12502571	rs8102416	A	G	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:174,163:0.48:337
chr19	12511828	rs182653947	G	C	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:150,165:0.52:315
chr19	12541532	rs10422063	C	A	5615.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:154,156:0.50:310
chr19	12541547	rs10402252	T	G	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:151,145:0.49:296
chr19	12542772	rs1134389	C	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=0.782;QD=8.86;ReadPosRankSum=-0.756;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:67,58:0.46:125
chr19	12542848	rs4804692	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.95;MQRankSum=-1.097;QD=13.25;ReadPosRankSum=-0.705;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	12542851	rs4804693	AT	GC	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=44.33;MQRankSum=-0.967;QD=14.58;ReadPosRankSum=-0.204;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	12542891	rs140908232	G	A	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	12542904	rs78266625	C	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	12543150	rs73921485	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr19	12543333	rs3979432	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	12544099	.	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=43.13;MQRankSum=0.401;QD=4.52;ReadPosRankSum=-0.439;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	12551616	rs35084134	C	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr19	12551715	rs11881297	A	C	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:266,247:0.48:513
chr19	12576049	rs7259240	G	A	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:125,96:0.43:221
chr19	12576573	rs10404972	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	12638141	rs61731851	C	T	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:122,82:0.40:204
chr19	12639615	rs10411589	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	12661335	rs2861411	C	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;MQ=63.02;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	12661472	rs200735897	A	AAC	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.385;QD=17.60;ReadPosRankSum=0.758;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	12661474	.	G	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.629;QD=19.16;ReadPosRankSum=1.536;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	12662318	rs79749579	G	GC	6918.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=32.33;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	12707904	rs1864082	T	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr19	12719880	rs148285808	A	AC	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	12720631	rs8100964	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.63;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	12760664	rs3815914	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	12772165	rs1054487	G	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:86,84:0.49:170
chr19	12772364	rs79674546	C	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	12773983	rs138733310	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	12774208	rs1054486	G	C	3939.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:226,205:0.48:431
chr19	12787002	rs34820996	G	GAGAC	546.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	12799142	rs114872706	G	A	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-1.373;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:105,124:0.54:229
chr19	12799194	rs7255750	G	A	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.931;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:84,98:0.54:182
chr19	12799245	rs7258853	G	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr19	12799686	rs11883224	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:60,93:0.61:153
chr19	12800490	rs7248201	G	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:88,88:0.50:176
chr19	12800851	rs76679560	G	A	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr19	12801855	.	G	A	227.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	12805380	rs10424461	T	C	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:121,128:0.51:249
chr19	12805431	rs10424623	T	C	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:169,165:0.49:334
chr19	12805525	rs10416965	G	C	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:202,177:0.47:379
chr19	12806970	rs139535728	C	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.884;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	12807066	rs6511832	G	C	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:79,98:0.55:177
chr19	12807187	rs6511833	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr19	12810028	.	G	C	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-0.325;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:33,62:0.65:95
chr19	12810269	.	GTTTT	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=-0.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	12810278	.	T	TAAA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=0.524;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	12812169	rs16978628	A	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:220,192:0.47:412
chr19	12812748	rs57235722	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr19	12813206	rs61450873	T	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.697;QD=4.74;ReadPosRankSum=5.056;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:109,51:0.32:160
chr19	12813599	rs10413431	A	G	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:142,112:0.44:254
chr19	12813683	rs16978630	T	C	3834.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:246,195:0.44:441
chr19	12814544	rs16978633	A	G	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:175,157:0.47:332
chr19	12816029	rs56839683	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr19	12816559	rs7248726	G	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr19	12817343	rs145549587	G	A	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:168,169:0.50:337
chr19	12825834	rs74540120	G	C	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr19	12830209	rs10413249	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	12831650	rs1122168	G	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,77:0.53:145
chr19	12831903	rs114896733	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr19	12841994	rs75619212	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	12857968	rs137889224	T	TTTAAGG	1577.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr19	12857969	.	C	A	1586.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr19	12858480	rs8177494	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr19	12865590	rs34896167	G	A	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:93,98:0.51:191
chr19	12874034	rs75128530	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	12876278	rs1205169	C	A	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	12877042	rs35337531	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	12880703	rs114441181	G	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr19	12897816	rs7250961	A	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	12908142	.	C	CTT	163.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=-0.157;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr19	12910979	rs10413408	G	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr19	12911285	rs10427027	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	12911926	rs10422248	C	T	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:145,164:0.53:309
chr19	12917520	rs11554400	A	G	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.253;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:61,73:0.54:134
chr19	12917686	rs13345720	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	12917761	rs55668927	A	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	12920935	rs7257575	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:136,95:0.41:231
chr19	12921120	rs7247253	T	C	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr19	12921186	rs7247284	T	C	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr19	12923806	rs113168000	G	A	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	12923821	.	G	GA	30	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5001;HP=13;HapScore=3;MGOF=8;MMLQ=26;MQ=59.13;NF=2;NR=2;PP=30;QD=10.5;SC=CCATCTCAAAGAAAAAAAAAA;SbPval=0.52;Source=Platypus;TC=10;TCF=6;TCR=4;TR=4;WE=12923829;WS=12923811;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr19	12936617	rs13628	C	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:85,76:0.47:161
chr19	12939792	rs1466306	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	12939858	rs10423639	AA	CC	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	12958360	rs2290689	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,124:0.48:260
chr19	12958697	rs2290688	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr19	12962648	rs7250751	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr19	12963143	rs1078264	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:93,85:0.48:178
chr19	12977021	rs74409365	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.564;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	12981477	rs141671785	C	CA	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.730;QD=9.86;ReadPosRankSum=0.293;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr19	12985576	rs11085822	A	G	4649.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:298,239:0.45:537
chr19	12996740	rs2072597	A	G	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=2.964;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:77,68:0.47:145
chr19	12997733	rs10407416	C	G	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,98:0.48:204
chr19	13002400	rs1799918	G	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	13002563	rs2242517	T	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	13006685	rs2238641	T	C	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.836;QD=15.26;ReadPosRankSum=-0.034;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr19	13006687	rs12151303	G	A	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.857;QD=14.26;ReadPosRankSum=-0.377;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr19	13008607	rs1060218	G	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:92,121:0.57:213
chr19	13010520	rs8012	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	13010643	rs9384	G	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr19	13015530	rs17706531	A	G	214.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=0.625;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr19	13029188	rs2965214	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr19	13030939	rs80326668	AT	A	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	13031210	rs2967897	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr19	13039284	rs2293683	A	G	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:174,139:0.44:313
chr19	13044544	rs2974750	C	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:84,60:0.42:144
chr19	13051757	.	C	T	469.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr19	13215973	rs7254704	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	13218799	.	CTTTTTTTTTTT	C	1750.73	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=37.25;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr19	13220546	rs76598051	C	A	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:234,152:0.39:386
chr19	13220676	rs10414282	G	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:151,155:0.51:306
chr19	13260252	.	G	GA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.803;QD=1.61;ReadPosRankSum=1.584;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr19	13260256	rs61378403	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=29.33;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	13261005	rs187045567	C	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:136,94:0.41:230
chr19	13317490	rs143342886	GTTA	G	2146.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	13317599	rs146613209	CTGG	C	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=0.146;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr19	13318283	rs16057	G	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr19	13318672	rs16054	CCTGCTG	C	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	13318982	rs148672975	AGGAGGG	A	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.799;QD=17.48;ReadPosRankSum=-0.225;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	13319693	rs16051	A	G	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:20,253:0.93:273
chr19	13319989	rs10413221	T	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	13320002	rs2304093	C	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	13320042	rs73509459	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr19	13322848	rs60185051	T	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr19	13323124	rs16048	T	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr19	13323641	.	TAC	T	72	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=58.92;NF=0;NR=2;PP=72;QD=38.5;SC=ATCCCCAGTATACACACACAC;SbPval=1.0;Source=Platypus;TC=7;TCF=1;TCR=6;TR=2;WE=13323650;WS=13323631;set=Platypus	GT:AD:AF:DP	0/1:5,2:0.29:7
chr19	13325229	rs17846925	G	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,67:0.47:144
chr19	13335300	rs71168691	CAAA	C	655.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.893;MLEAC=2;MLEAF=1.000;MQ=59.79;MQRankSum=0.000;QD=28.51;ReadPosRankSum=1.737;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr19	13335432	rs3816027	G	A	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	13338180	rs143245670	AAAG	A	1056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=61.51;MQRankSum=3.316;QD=16.01;ReadPosRankSum=-1.104;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	13339405	rs34941295	TAG	T	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	13339419	rs73922370	G	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.306;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	13339673	rs17846918	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	13345657	rs3765012	C	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr19	13355900	rs16039	T	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	13373477	rs16031	A	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	13387837	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=0.251;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:91,22:0.19:113
chr19	13409390	rs16025	C	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:239,186:0.44:425
chr19	13409472	rs16023	T	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:105,110:0.51:215
chr19	13414402	rs16017	G	C	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:159,123:0.44:282
chr19	13419212	rs16013	G	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr19	13440985	rs3834988	C	CT	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	13443770	rs16008	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	13443933	rs10421055	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	13445208	rs2248069	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.095;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	13445367	.	GTGTGTGTT	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.46;ReadPosRankSum=-0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	13446763	rs114479295	G	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	13470732	rs150584850	CA	C	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr19	13865070	rs378189	C	T	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=0.696;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:68,76:0.53:144
chr19	13866793	rs392725	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	13866866	rs417186	T	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr19	13866957	rs2910225	T	C	8893.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	13868117	rs693151	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	13868669	rs6511886	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr19	13870153	rs371671	C	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	13873093	rs73922732	G	A	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.489;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:26,55:0.68:81
chr19	13873698	rs35761244	G	C	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:135,114:0.46:249
chr19	13873870	rs35254119	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr19	13875258	rs455093	C	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	13875626	.	T	C	42	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=2;MGOF=46;MMLQ=19;MQ=58.09;NF=4;NR=1;PP=42;QD=15.3542425094;SC=GGCGGCCGGGTTGGAGGTGGG;SbPval=0.79;Source=Platypus;TC=11;TCF=8;TCR=3;TR=5;WE=13875634;WS=13875616;set=Platypus	GT:AD:AF:DP	1/0:6,5:0.45:11
chr19	13876694	.	G	A	715.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	13879036	rs116609813	G	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	13879601	rs139915391	G	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr19	13879614	rs116360150	A	G	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-1.323;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:77,68:0.47:145
chr19	13879622	rs346152	T	C	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr19	13879780	rs114003575	G	A	2807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.443;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:185,149:0.45:334
chr19	13882941	rs10402855	G	C	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr19	13883099	rs1469071	A	G	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:199,152:0.43:351
chr19	13884312	rs1559153	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	13884321	rs1559152	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	13884444	.	TTA	T	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=16.66;ReadPosRankSum=-1.433;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr19	13884469	rs3029143	G	GAACAA	996.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=43.34;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	13884655	rs1128028	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	13884724	rs1128030	G	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=24.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	13885238	rs73507698	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	13885309	rs1128749	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr19	13885437	rs1559149	C	A	3989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.348;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:227,206:0.48:433
chr19	13885484	rs10104	A	G	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.196;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:194,187:0.49:381
chr19	13885614	rs2287752	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	13892285	rs8104574	G	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=1.399;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	13899041	.	CTT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=2.209;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	13910539	rs28480458	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:208,170:0.45:378
chr19	13915498	rs78970915	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	13915556	rs73511510	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr19	13915578	rs74718437	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr19	13915670	rs76197826	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:193,125:0.39:318
chr19	13919645	rs111385888	G	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr19	13923908	rs75791324	C	G	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=2.068;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:140,100:0.42:240
chr19	13925455	rs113762344	A	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:175,133:0.43:308
chr19	13927881	rs111443176	C	CA	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	13930398	rs59082791	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr19	13934443	rs116643615	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:76,46:0.38:122
chr19	13940959	rs10403445	G	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	13941875	rs144297960	G	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:94,79:0.46:173
chr19	13988416	rs2016163	A	G	12626.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=1.074;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,495:1.00:497
chr19	13988558	rs148122339	C	CGAG	3083.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:111,84:0.43:195
chr19	13993457	rs2242130	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	13993619	rs139660210	A	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr19	14000170	rs3803892	T	C	8140.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	14000400	rs3803891	A	G	9274.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:2,364:0.99:366
chr19	14000450	rs145714071	G	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:123,89:0.42:212
chr19	14000763	rs149879449	C	T	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:196,154:0.44:350
chr19	14000911	rs144892455	T	C	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:218,188:0.46:406
chr19	14001228	rs114174140	T	C	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr19	14015711	rs6511898	C	A	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr19	14015815	rs6511899	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	14015878	rs149005234	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.836;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	14020573	rs12971500	T	C	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:139,157:0.53:296
chr19	14023191	rs7250180	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	14029269	rs2305776	A	C	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	14029627	rs11883041	A	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=1.592;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:90,74:0.45:164
chr19	14030689	rs10410239	T	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	14037745	rs750581	A	C	6040.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:359,315:0.47:674
chr19	14040148	.	CTGGGG	C	1509.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr19	14040896	rs11669628	G	A	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=2.159;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:184,144:0.44:328
chr19	14045033	rs2305779	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.205;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	14045311	rs369502229	AGT	A	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	14046915	rs114953254	T	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	14065341	rs10409785	T	C	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:134,157:0.54:291
chr19	14065534	rs1056142	A	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	14066679	rs73515571	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr19	14066857	rs111625844	T	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,92:0.51:182
chr19	14066884	rs112164370	T	C	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-2.016;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:114,104:0.48:218
chr19	14067016	rs77916080	G	A	8582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-1.279;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:423,428:0.50:851
chr19	14070085	rs7245761	T	C	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:224,210:0.48:434
chr19	14070218	rs73517649	C	T	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:193,213:0.52:406
chr19	14070338	rs10425669	G	A	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:123,93:0.43:216
chr19	14070706	rs141180609	A	AGGTGGGCCCAGGGCGGGCAG	5299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.201;QD=18.21;ReadPosRankSum=2.084;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:171,120:0.41:291
chr19	14070760	rs10402005	C	T	6373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.244;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.885;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:248,315:0.56:563
chr19	14071863	rs8104373	C	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.281;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr19	14073411	rs61497567	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.67;ReadPosRankSum=0.350;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	14074609	rs113647736	C	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr19	14076378	rs8113080	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:98,78:0.44:176
chr19	14079785	rs73517668	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	14081077	rs58149090	G	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	14083761	rs2305780	T	C	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=1.200;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:99,74:0.43:173
chr19	14091363	rs73924070	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	14091543	rs146048336	T	TGCATCCTCTCTGGGGTGGGCTC	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=64.53;MQRankSum=-0.846;QD=14.89;ReadPosRankSum=-0.760;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr19	14091545	.	C	CATCCTCTCTGGGGTGGGCTCGA	1203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=63.20;MQRankSum=1.975;QD=12.04;ReadPosRankSum=1.963;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:58,42:0.42:100
chr19	14093073	.	A	ACTGATGACAGCCCGTGCAGTTGCACCGAGCAT	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.794;SOR=2.589;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	14093806	rs73924095	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	14094579	rs143333916	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr19	14104688	rs143370000	CT	C	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.111;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	14139004	rs1982632	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	14139196	rs79665112	C	T	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=3.079;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:86,74:0.46:160
chr19	14140981	.	G	GT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.610;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr19	14141480	rs4263049	A	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,67:0.49:137
chr19	14142616	rs6511905	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	14153247	rs114140175	C	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr19	14156840	rs149367806	AAAAC	A	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	14159806	rs76209808	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:69,94:0.58:163
chr19	14161547	rs10424865	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:89,66:0.43:155
chr19	14161745	rs10404803	T	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	14162347	rs10404921	C	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=3.231;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr19	14162676	rs2306190	A	C	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr19	14162865	rs79939273	G	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr19	14165598	rs56361194	C	T	7430.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:324,357:0.52:681
chr19	14166065	rs148192106	A	AGGACAAAAGGGAAGACAGGGTTAAGATG	4058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=62.23;MQRankSum=8.433;QD=23.06;ReadPosRankSum=0.471;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:98,78:0.44:176
chr19	14183898	.	A	G	2165.77	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:192,118:0.38:310
chr19	14184011	rs116653656	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:141,131:0.48:272
chr19	14184713	rs35666756	C	CG	9823.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=33.30;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	14185226	rs7258963	T	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	14193981	rs73925727	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.77;ReadPosRankSum=-1.050;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	14194458	rs35357458	C	A	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	14199417	rs75098773	G	A	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:156,143:0.48:299
chr19	14200109	rs8062	T	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr19	14200201	rs73509717	A	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr19	14204088	rs148025857	A	G	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr19	14266312	rs11554838	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr19	14267378	rs187316047	T	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=8.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=-1.254;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	14269195	rs35068509	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr19	14269279	rs41276898	T	G	2911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.519;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:140,153:0.52:293
chr19	14273641	rs3745462	A	G	5935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.545;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:356,297:0.45:653
chr19	14277727	rs899171	T	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-1.192;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	14294288	rs61051191	GC	G	3965.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	14492219	rs28366013	C	A	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.631;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:52,47:0.47:99
chr19	14492297	rs115061086	T	G	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:126,164:0.57:290
chr19	14499350	rs201139435	C	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.23;MQRankSum=-0.887;QD=15.80;ReadPosRankSum=1.507;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	14499357	rs2302094	T	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.60;QD=40.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	14499366	rs2302093	T	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=52.24;MQRankSum=-2.258;QD=20.09;ReadPosRankSum=-0.573;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr19	14499377	rs10410377	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr19	14499410	rs2302092	G	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	14499421	rs10411324	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr19	14499468	rs8108408	T	G	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=52.33;MQRankSum=-5.685;QD=13.20;ReadPosRankSum=-0.285;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:73,38:0.34:111
chr19	14499471	rs8108409	T	C	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-5.039;QD=13.08;ReadPosRankSum=-0.840;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr19	14499477	rs8105300	A	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-4.859;QD=11.71;ReadPosRankSum=-0.436;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:85,45:0.35:130
chr19	14499495	rs183595680	G	A	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-3.960;QD=5.23;ReadPosRankSum=0.766;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:111,55:0.33:166
chr19	14499666	rs73924173	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:97,87:0.47:184
chr19	14507102	rs200115962	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.364;QD=1.28;ReadPosRankSum=0.025;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr19	14507128	rs75902260	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-5.967;QD=3.97;ReadPosRankSum=-1.412;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr19	14507307	rs62122581	C	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:445,172:0.28:617
chr19	14507342	rs62122582	G	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=5.718;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-10.449;QD=4.86;ReadPosRankSum=-4.825;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:337,78:0.19:415
chr19	14507345	rs62122583	C	G	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.108;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=13.800;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-10.923;QD=1.78;ReadPosRankSum=-4.597;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:329,68:0.17:397
chr19	14507373	.	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.111;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=28.697;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-13.189;QD=0.14;ReadPosRankSum=-2.845;SOR=3.769;set=HC	GT:AD:AF:DP	0/1:194,21:0.10:215
chr19	14508223	rs10412108	A	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	14508385	rs10410071	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	14508964	rs7508244	T	C	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	14512489	rs2230748	G	A	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:254,176:0.41:430
chr19	14519683	rs75381848	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr19	14522434	rs55968966	GCCTTA	G	18397.73	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	14551095	rs116522511	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	14561722	rs8107892	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	14562977	rs12973696	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	14578354	rs34422078	C	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,71:0.46:154
chr19	14580869	rs34241778	GC	G	2464.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr19	14581714	rs73519821	A	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:100,73:0.42:173
chr19	14582283	rs114654248	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	14582539	rs8598	C	T	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:200,211:0.51:411
chr19	14582602	.	T	TCCCCTGCCCCTG	2271.73	.	AC=1;AF=0.500;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	14583264	rs2241363	G	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	14583582	rs11668633	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chr19	14583684	rs10419296	G	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr19	14584073	rs10421765	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr19	14584366	rs7249305	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr19	14589378	rs1127307	C	T	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr19	14590142	rs138580153	TGACAAGAGTGA	T	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	14590164	.	C	CA	84.77	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	14627050	rs4926222	G	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	14627245	rs35290640	CCT	C	5473.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:103,139:0.57:242
chr19	14628828	.	G	T	155.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	14629150	rs3962158	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	14655865	rs7252966	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	14674235	rs891089	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr19	14676578	rs61732092	C	T	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:189,176:0.48:365
chr19	14682804	rs9543	G	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.290;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	14693777	rs151002834	A	ATG	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	14698416	rs138728953	C	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.85;MQRankSum=0.449;QD=11.71;ReadPosRankSum=-0.799;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	14707904	rs73925008	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr19	14717791	rs10409868	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	14719854	rs10404194	T	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	14721019	rs6511944	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	14740824	rs77548886	A	AG	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	14743562	rs10405678	C	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	14743902	rs2045912	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr19	14744181	rs899217	T	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	14752325	rs8102646	C	T	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	14754831	rs71166776	GT	G	123.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	14769339	rs4606855	C	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	14779550	rs4239642	C	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	14804183	rs10407394	A	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	14805719	rs3850141	T	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	14806017	rs3813144	G	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	14817062	rs4808319	G	A	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	14817145	rs4809215	G	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	14817548	rs6511961	T	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	14819310	rs34925577	C	CAG	1847.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	14826849	rs4078586	T	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	14829749	rs3764626	C	T	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr19	14846897	rs1859257	T	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	14857179	rs1029476	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.40;ReadPosRankSum=-1.451;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr19	14857187	rs34368264	C	CTT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.17;ReadPosRankSum=-1.036;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr19	14862430	rs2524383	C	G	12112.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	14862517	rs3752189	A	G	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:166,117:0.41:283
chr19	14863039	rs115970049	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,29:0.35:84
chr19	14866698	rs28420691	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	14866974	rs2253472	T	C	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:115,89:0.44:204
chr19	14867186	rs2524386	G	A	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr19	14875201	rs7253782	G	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	14875388	rs35612307	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr19	14877630	rs6511971	T	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	14877799	rs12976472	G	C	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=6.171;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-11.306;QD=4.16;ReadPosRankSum=-6.045;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:258,56:0.18:314
chr19	14877806	rs12976475	G	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=11.338;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-13.245;QD=4.06;ReadPosRankSum=-7.281;SOR=1.471;set=HC	GT:AD:AF:DP	0/1:247,45:0.15:292
chr19	14883356	rs115050505	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr19	14884946	.	A	G	38	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=2;MMLQ=24;MQ=51.03;NF=0;NR=5;SC=GATGGGGCAGAGCGCTGAGTT;SbPval=1.0;Source=Platypus;TC=16;TCF=3;TCR=13;TR=5;WE=14884954;set=Platypus	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	14885014	rs45480298	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.72;MQRankSum=-0.524;QD=9.35;ReadPosRankSum=0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	14885023	rs56957458	A	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.72;MQRankSum=-0.524;QD=8.75;ReadPosRankSum=0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	14885030	rs201737275	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.97;MQRankSum=-0.431;QD=7.29;ReadPosRankSum=1.282;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr19	14910321	rs16979912	A	G	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr19	14910438	rs10415312	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr19	14910573	rs10415562	C	T	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	14910613	rs60788745	A	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:68,79:0.54:147
chr19	14910654	rs17230134	T	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	14938616	rs2190686	T	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:133,146:0.52:279
chr19	14951873	rs10221530	CA	TT	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.676;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-3.741;QD=15.06;ReadPosRankSum=1.151;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:73,50:0.41:123
chr19	14951879	rs146255677	C	T	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.923;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-3.741;QD=15.06;ReadPosRankSum=1.065;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:73,50:0.41:123
chr19	14951882	rs138114847	T	A	1806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.572;QD=14.69;ReadPosRankSum=1.449;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr19	14951884	rs112672877	T	G	1806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.610;QD=14.81;ReadPosRankSum=2.481;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:74,48:0.39:122
chr19	14952017	rs11880955	T	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr19	14952143	rs9305052	G	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:125,145:0.54:270
chr19	14952583	rs28540032	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr19	14974930	rs10407452	G	A	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	14975040	rs10407682	G	A	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:154,189:0.55:343
chr19	14975368	rs10415965	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	14975471	rs11085912	C	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	14991439	rs34590588	T	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr19	14991459	rs13345394	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	14991963	rs10404119	C	A	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:138,110:0.44:248
chr19	14992031	rs10405129	A	G	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr19	14992042	rs10405136	A	G	3008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-0.815;QD=17.60;ReadPosRankSum=-1.181;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:92,79:0.46:171
chr19	14992045	rs10404335	C	T	3008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-0.836;QD=17.49;ReadPosRankSum=-0.723;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:93,79:0.46:172
chr19	14992178	rs149867911	CTATTTATTTATT	C,CTATTTATTTATTTATT	1431.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/2:0.39,0.56:41
chr19	14992226	rs10410793	A	G	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.397;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	15052983	rs3044711	T	TATC	5397.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr19	15061216	rs12461006	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr19	15063757	rs2229896	A	G	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:179,199:0.53:378
chr19	15064065	rs10417793	A	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=-0.639;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	15064858	rs2269913	A	C	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr19	15065169	rs757465	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	15072787	rs3827000	A	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr19	15073226	rs7247183	T	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr19	15073303	rs62113268	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	15075020	rs10407669	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr19	15083485	rs3746294	T	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:247,184:0.43:431
chr19	15083693	rs3746295	C	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	15124474	rs11085935	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr19	15131213	rs7248834	G	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	15131261	rs4405675	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	15131330	rs35352238	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:91,81:0.47:172
chr19	15131340	rs34375549	T	C	2019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.497;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:87,103:0.54:190
chr19	15131595	rs73929534	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	15132574	rs757463	C	G	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	15132821	rs116323335	C	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr19	15133762	rs8111625	G	C	12862.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	15133787	rs10424547	C	A	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:247,181:0.42:428
chr19	15133926	rs8112667	C	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr19	15165818	rs3181162	A	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.527;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	15166762	rs73518121	G	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	15167088	rs11574686	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr19	15198263	rs8105277	A	G	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,455:1.00:456
chr19	15198292	rs8104843	C	G	5528.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:265,285:0.52:550
chr19	15198507	rs8108721	T	C	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:145,171:0.54:316
chr19	15198631	rs8105737	A	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,92:0.48:192
chr19	15198764	rs12975625	T	C	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	15223466	rs4808977	A	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	15224225	rs8109071	G	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	15224265	rs8109089	G	C	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15226611	rs2074261	C	A	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	15226970	rs2074262	G	A	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:193,189:0.49:382
chr19	15227030	rs2074263	G	A	14443.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr19	15227798	rs12972958	G	C	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	15233581	rs2074265	C	A	7933.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.95;ReadPosRankSum=0.412;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:1,226:1.00:227
chr19	15233581	.	CAGCACG	AAGCACA,AAGCACG	945	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=27;MQ=59.91;NF=32,75;NR=25,56;PP=819,945;QD=15.306453945;SC=AGTAGGGGTACAGCACGTCAA;SbPval=0.48;Source=Platypus;TC=132;TCF=76;TCR=56;TR=57,131;WE=15233595;WS=15233571;set=Platypus	GT:AF:DP	0/1:0.43:132
chr19	15233587	rs114838237	G	A	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-1.012;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:121,122:0.50:243
chr19	15233631	rs2074266	G	A	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:155,137:0.47:292
chr19	15235859	rs79788360	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.336;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	15235932	rs4141356	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	15271626	rs61731974	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr19	15273221	rs757472	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-1.785;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	15273231	rs4809028	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.90;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	15273248	rs4809029	A	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	15273381	rs4809030	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	15276055	rs2074617	C	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	15276143	rs2074618	C	T	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	15276739	rs16980398	A	G	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:208,148:0.42:356
chr19	15276919	rs2074619	G	A	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	15276923	rs10416777	C	T	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.69;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	15277006	rs45591935	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	15277009	rs62113791	CA	TG	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	15277892	rs10417352	T	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	15277938	rs1548554	C	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	15278057	rs1548555	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	15284866	.	T	TG	192.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr19	15285052	rs1044006	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	15285272	rs10422818	T	C	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:101,99:0.49:200
chr19	15285325	rs148042678	G	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr19	15285382	rs71168591	ATTTT	A	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.46;ReadPosRankSum=0.928;SOR=2.430;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	15290007	rs10408676	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr19	15290412	rs2074621	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,51:0.49:105
chr19	15291576	rs35769976	C	G	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:83,138:0.62:221
chr19	15291699	rs57538005	T	C	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:127,141:0.53:268
chr19	15292088	rs7257550	G	C	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	15292366	rs11669982	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr19	15292437	rs1043997	T	C	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr19	15294991	rs2074616	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	15295011	rs8113116	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr19	15300069	rs10423702	T	C	14553.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr19	15302844	rs1043994	T	C	6044.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	15303225	rs3815188	G	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:166,128:0.44:294
chr19	15308096	rs73506364	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	15341675	rs114958700	G	C	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:78,93:0.54:171
chr19	15341751	rs75156327	T	C	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:169,206:0.55:375
chr19	15349382	rs74691090	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.42;ReadPosRankSum=0.431;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	15471856	rs4809184	T	C	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr19	15485350	rs4809185	C	T	11328.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr19	15508130	rs7247749	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15508362	rs2058322	G	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	15536623	.	AGGAG	A	321.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-0.418;QD=17.85;ReadPosRankSum=-1.950;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	15536640	.	AGGAGGAGGGAGGAGGAGGAG	A	192.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-1.198;QD=13.78;ReadPosRankSum=0.846;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	15539439	rs887898	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	15549255	rs1005953	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	15549939	rs929613	C	T	5603.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.06;ReadPosRankSum=-0.642;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:10,233:0.96:243
chr19	15563386	.	TGG	T	125.90	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	15563671	rs377128854	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.294;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr19	15564115	rs57208996	G	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	15569592	rs4809193	C	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	15569596	rs34234014	A	AC	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	15570931	rs3764566	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	15575173	rs371577799	TG	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-0.910;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	15586672	rs892145	A	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:127,95:0.43:222
chr19	15587185	rs733731	C	T	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:202,250:0.55:452
chr19	15587345	rs3813135	T	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr19	15648867	rs28631843	G	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-3.592;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr19	15651539	rs201608860	GCC	G	1131.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr19	15651548	rs372183725	AAT	A	1152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.17;ReadPosRankSum=1.116;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr19	15651551	rs372614865	T	G	1119.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=1.162;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	15651553	rs62113202	C	G	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.39;ReadPosRankSum=0.306;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	15651556	.	G	GAGC	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=8.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.52;ReadPosRankSum=0.692;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	15651560	rs62113205	C	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.438;SOR=1.638;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	15651562	rs139932061	CG	C	790.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	15651564	rs60465772	A	T	760.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=1.556;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	15651568	rs55832992	C	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.14;ReadPosRankSum=0.985;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr19	15658779	.	TGA	T	323	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=4;HapScore=2;MGOF=42;MMLQ=16;MQ=58.42;NF=17;NR=6;PP=323;QD=14.1739130435;SC=CAGCTGCCCCTGAGAGAGAGA;SbPval=0.35;Source=Platypus;TC=29;TCF=23;TCR=6;TR=23;WE=15658788;WS=15658769;set=Platypus	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	15658805	.	AGG	A	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.20;MQRankSum=1.667;QD=22.37;ReadPosRankSum=0.306;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	15658807	.	G	A	1578	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=3;MGOF=12;MMLQ=26;MQ=56.66;NF=18;NR=6;PP=1578;QD=67.1988005228;SC=AGAGAGAGAGGGAGAGAGTGT;SbPval=0.35;Source=Platypus;TC=50;TCF=40;TCR=10;TR=24;WE=15658832;WS=15658795;set=Platypus	GT:AD:AF:DP	1/0:26,24:0.48:50
chr19	15658811	.	AGAGTGTGT	A	902	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=3;MGOF=12;MMLQ=25;MQ=57.94;NF=20;NR=8;PP=902;QD=33.25;SC=AGAGAGGGAGAGAGTGTGTGT;SbPval=0.49;Source=Platypus;TC=37;TCF=27;TCR=10;TR=28;WE=15658832;WS=15658795;set=Platypus	GT:AD:AF:DP	1/0:9,28:0.76:37
chr19	15658813	.	AGTGTGT	A	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=38;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=61.69;MQRankSum=0.253;QD=10.56;ReadPosRankSum=-1.593;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	15729056	rs714772	C	G	3883.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:262,204:0.44:466
chr19	15730498	rs55848814	G	GC	5072.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	15734326	.	TTTAGAGGTGATTGCATAGAAAGCTTCCTGGGAAGAACAAACAGGAGGTCGGAAGGAAGCATG	T	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=7.733;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.539;QD=10.11;ReadPosRankSum=-1.531;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr19	15739084	rs4239613	T	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chr19	15739315	rs2056821	T	C	5025.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:231,241:0.51:472
chr19	15739597	rs2056822	A	C	5369.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:314,285:0.48:599
chr19	15739992	rs2239366	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr19	15740220	rs4239614	C	T	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.388;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:160,107:0.40:267
chr19	15740268	rs2239367	C	G	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=0.438;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr19	15740275	rs2283605	G	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.617;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr19	15754893	rs2203998	A	G	5342.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:245,267:0.52:512
chr19	15754975	rs2203999	C	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:61,86:0.59:147
chr19	15757927	rs1290626	T	C	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	15760147	rs28371478	G	A	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:112,128:0.53:240
chr19	15763577	rs2733750	A	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:130,123:0.49:253
chr19	15763691	rs1805041	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr19	15763721	rs1805042	G	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr19	15763798	rs2683039	G	C	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr19	15763929	rs2683040	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;MQ=57.77;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	15769253	rs4646513	C	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:157,157:0.50:314
chr19	15769270	rs4646514	A	C	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:143,148:0.51:291
chr19	15769379	rs4646515	G	C	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr19	15769449	rs4646516	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr19	15769478	rs4646517	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr19	15769529	rs4646518	GC	TT	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr19	15769625	rs1915390	A	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	15769707	rs28371498	C	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr19	15769775	rs4646520	A	G	425.74	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr19	15769805	rs10404163	A	T	209.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	15769965	rs2176919	A	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	15769992	rs2460817	A	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	15770018	rs68106141	T	C	603.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.89;MQRankSum=3.017;QD=37.72;ReadPosRankSum=1.331;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	15770018	.	TCC	CCT	455	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=5;HapScore=4;MGOF=22;MMLQ=22;MQ=54.24;NF=5;NR=5;PP=455;QD=50.8467874862;SC=AGTTTCCACCTCCCTCCCCAA;SbPval=0.41;Source=Platypus;TC=12;TCF=7;TCR=5;TR=10;WE=15770035;WS=15770008;set=Platypus	GT:AD:AF:DP	1/0:2,10:0.83:12
chr19	15770020	rs2460819	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=3.017;QD=37.24;ReadPosRankSum=0.663;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:1,15:0.94:16
chr19	15770027	.	A	T	138	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=4;HapScore=4;MGOF=22;MMLQ=27;MQ=52.58;NF=3;NR=0;PP=138;QD=57.5904041824;SC=CTCCCTCCCCAAGGAACTGCA;SbPval=1.0;Source=Platypus;TC=14;TCF=9;TCR=5;TR=3;WE=15770035;WS=15770008;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr19	15784061	rs7254013	C	A	3599.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:54,165:0.75:219
chr19	15784116	rs7253210	G	A	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	15784167	rs7254627	A	G	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	15784195	rs10414690	G	C	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.26;ReadPosRankSum=-2.756;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:29,95:0.77:124
chr19	15784200	rs55794585	C	T	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.90;ReadPosRankSum=-2.225;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:29,91:0.76:120
chr19	15784214	rs56398124	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:29,71:0.71:100
chr19	15784285	rs56205003	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr19	15784319	rs56124328	G	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr19	15784377	rs16995376	C	T	3058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-2.063;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:80,135:0.63:215
chr19	15784386	rs16995378	C	T	9228.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.63;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	15784617	.	A	G	903	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=27;MQ=59.94;NF=17;NR=39;PP=903;QD=16.7459145098;SC=TCAGTGAGCTAGGTATTGATG;SbPval=0.4;Source=Platypus;TC=80;TCF=22;TCR=58;TR=56;WE=15784625;WS=15784607;set=Platypus	GT:AD:AF:DP	0/1:24,56:0.70:80
chr19	15784660	.	A	G	849	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=2;HapScore=1;MGOF=43;MMLQ=27;MQ=59.58;NF=2;NR=31;PP=849;QD=26.7809458348;SC=GAGAAGCAAGAGAGATGGCTC;SbPval=0.78;Source=Platypus;TC=34;TCF=3;TCR=31;TR=33;WE=15784668;WS=15784650;set=Platypus	GT:AD:AF:DP	1/1:1,33:0.97:34
chr19	15788930	rs610142	A	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	15789034	rs28416595	C	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:79,126:0.61:205
chr19	15789098	rs609636	A	G	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	15789140	rs609290	A	G	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	15790931	rs199615738	CT	C	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr19	15790936	rs144765311	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr19	15791043	rs2683027	G	A	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:483,188:0.28:671
chr19	15791066	rs61731193	C	T	8116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-14.981;QD=10.67;ReadPosRankSum=2.451;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:540,221:0.29:761
chr19	15791074	rs114254919	A	G	8673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-14.812;QD=10.58;ReadPosRankSum=1.289;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:573,247:0.30:820
chr19	15791081	rs146740964	T	C	8767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-14.598;QD=10.67;ReadPosRankSum=0.162;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:566,256:0.31:822
chr19	15791151	rs116266410	G	A	7302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-8.059;QD=12.81;ReadPosRankSum=2.092;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:366,204:0.36:570
chr19	15791151	.	GAG	AAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=52;MMLQ=24;MQ=59.48;NF=42;NR=66;PP=2944;QD=20;SC=ACCTTGCGGGGAGGGTAGGGG;SbPval=0.46;Source=Platypus;TC=314;TCF=118;TCR=196;TR=108;WE=15791161;WS=15791141;set=Platypus	GT:AD:AF:DP	1/0:206,108:0.34:314
chr19	15791153	rs115514058	G	T	7302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-7.568;QD=13.18;ReadPosRankSum=2.425;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:356,198:0.36:554
chr19	15791178	rs148891614	C	T	5630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.668;QD=13.97;ReadPosRankSum=1.697;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:249,154:0.38:403
chr19	15791180	rs8100667	C	T	5582.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:152,243:0.62:395
chr19	15791188	rs187651397	G	A	5212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-5.610;QD=14.89;ReadPosRankSum=1.592;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:214,136:0.39:350
chr19	15791197	rs143608773	A	G	4765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-5.449;QD=15.78;ReadPosRankSum=1.354;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:184,118:0.39:302
chr19	15791199	rs147972597	T	C	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.548;QD=15.05;ReadPosRankSum=1.816;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:179,111:0.38:290
chr19	15791203	rs140731978	A	G	4003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-5.604;QD=14.30;ReadPosRankSum=1.896;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:174,106:0.38:280
chr19	15791206	rs145798366	A	T	3895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.036;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-5.430;QD=14.48;ReadPosRankSum=0.883;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:163,106:0.39:269
chr19	15791210	rs138713818	A	C	3937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-5.336;QD=15.26;ReadPosRankSum=0.145;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:154,104:0.40:258
chr19	15791212	rs142773675	A	C	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-5.390;QD=15.12;ReadPosRankSum=0.260;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:154,102:0.40:256
chr19	15793068	rs7254785	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr19	15793069	rs10415700	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr19	15793235	rs2285888	T	C	10412.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=29.75;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	15793235	.	TGTC	CGTC,CGTT	2493	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=24;MQ=55.96;NF=96,19;NR=107,23;PP=2493,338;QD=12.4520749387;SC=GGGCAGCAGTTGTCTGGACAT;SbPval=0.52;Source=Platypus;TC=203;TCF=96;TCR=107;TR=203,42;WE=15793246;WS=15793225;set=Platypus	GT:AF:DP	0/1:1.00:203
chr19	15793238	rs144258147	C	T	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-2.953;QD=2.48;ReadPosRankSum=-1.675;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:277,74:0.21:351
chr19	15793282	rs35352350	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.336;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-4.510;QD=1.25;ReadPosRankSum=-1.267;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:198,35:0.15:233
chr19	15794411	rs61731191	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:306,126:0.29:432
chr19	15794423	rs114945576	C	T	4538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-4.320;QD=9.58;ReadPosRankSum=1.370;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:342,132:0.28:474
chr19	15794423	.	CCA	TCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=59.59;NF=50;NR=42;PP=2944;QD=20;SC=GGCGGCGCTTCCACAGGGCCT;SbPval=0.47;Source=Platypus;TC=286;TCF=160;TCR=126;TR=92;WE=15794433;WS=15794401;set=Platypus	GT:AD:AF:DP	0/1:194,92:0.32:286
chr19	15794425	rs116788636	A	G	4538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-4.270;QD=9.36;ReadPosRankSum=0.863;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:348,137:0.28:485
chr19	15794447	rs58642948	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:389,133:0.25:522
chr19	15794463	rs57578760	G	C	3683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-4.600;QD=6.52;ReadPosRankSum=1.930;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:424,141:0.25:565
chr19	15794470	rs150943202	G	A	4591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.626;QD=7.92;ReadPosRankSum=1.900;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:436,144:0.25:580
chr19	15794595	rs628603	A	G	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.815;QD=4.23;ReadPosRankSum=-1.669;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:268,108:0.29:376
chr19	15795690	rs61729079	G	C	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr19	15795724	rs78368217	A	G	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.445;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:113,58:0.34:171
chr19	15795733	rs76798225	C	G	2002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.028;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:121,57:0.32:178
chr19	15795842	rs2018030	C	T	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.51;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	15795842	.	CGGTGCT	TGGTGCC,TGGTGCT	922	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=27;MQ=59.66;NF=20,51;NR=10,50;PP=317,922;QD=12.3489291621;SC=GTCCACCCTCCGGTGCTGAAG;SbPval=0.94;Source=Platypus;TC=101;TCF=51;TCR=50;TR=30,101;WE=15795856;WS=15795832;set=Platypus	GT:AF:DP	0/1:0.30:101
chr19	15795848	rs76911875	T	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=7.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-2.430;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:101,55:0.35:156
chr19	15795939	rs61729075	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr19	15806703	rs695149	A	C	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	15807062	rs687774	C	T	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	15807157	rs688231	A	G	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	15807175	rs688256	G	C	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	15807212	rs596252	T	G	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	15807305	rs688755	T	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15807830	rs593421	T	C	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	15807884	rs593818	A	G	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr19	15807915	rs202235964	GT	G	3326.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:64,173:0.73:237
chr19	15807984	rs594255	G	A	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	15838972	rs4569397	T	A	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	15839081	rs2067083	C	T	8725.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.339;MLEAC=2;MLEAF=1.000;MQ=58.19;MQRankSum=7.121;QD=24.93;ReadPosRankSum=-1.583;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:8,342:0.98:350
chr19	15839910	rs10426009	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	15852223	rs1966357	A	C	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	15852363	rs11670007	G	A	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr19	15852544	rs11670326	C	T	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr19	15853150	rs16980824	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	15881751	rs8112713	A	C	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	15881953	rs4807986	A	G	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	15882832	.	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.342;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-7.919;QD=1.61;ReadPosRankSum=0.012;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr19	15884810	rs10421246	A	T	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	15890388	rs7259595	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	15890517	rs11669449	A	C	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	15890625	rs11673423	C	G	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	15890771	rs56317414	T	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	15890777	rs55926517	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	15890800	rs56180406	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	15904914	rs150835909	C	T	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:175,193:0.52:368
chr19	15905276	rs61754880	G	A	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:223,165:0.43:388
chr19	15905661	rs67455341	C	A	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	15918380	rs28426969	C	T	7402.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	15918647	rs4081570	G	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.64;QD=32.54;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	15932941	rs3761012	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	15933059	rs3761013	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	15933155	rs367984219	A	AT	224.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	15934599	rs2285881	C	G	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	15934656	rs10411865	A	G	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	15989730	rs4020346	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-6.174;QD=0.78;ReadPosRankSum=1.314;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr19	16006178	rs8109064	A	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr19	16006413	rs3093114	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr19	16008099	rs2074902	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	16008257	rs3093106	T	C	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	16008388	rs3093105	A	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr19	16008434	rs3093103	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	16008469	rs3093100	C	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.90;ReadPosRankSum=-1.198;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	16008512	rs3093098	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	16024605	rs75284625	C	G	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.440;QD=9.26;ReadPosRankSum=1.430;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:156,150:0.49:306
chr19	16024662	rs1064796	G	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	16033379	rs4808409	G	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr19	16034714	rs8104361	A	G	8479.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	16035517	rs3746156	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	16038198	rs148593440	C	A	3759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=1.518;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:250,202:0.45:452
chr19	16038334	rs2219358	G	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:101,78:0.44:179
chr19	16038390	rs2305803	G	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr19	16040292	rs3765070	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	16040461	rs7247076	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	16040473	rs4808414	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr19	16044930	rs113731484	C	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr19	16044945	rs149719337	TCCCTGAG	T	1692.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr19	16045141	rs2305801	T	C	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:132,164:0.55:296
chr19	16060021	rs16980821	C	T	11246.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr19	16060117	rs16980994	C	A	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	16060248	rs16980822	A	G	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	16060453	rs115548355	T	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:75,102:0.58:177
chr19	16060523	rs61732447	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:127,47:0.27:174
chr19	16060658	rs11880184	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	16060827	rs1594685	T	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	16130451	rs11283334	A	ATGGCCCTCC	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	16130604	rs7250074	T	C	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr19	16131679	rs757545	T	C	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:142,140:0.50:282
chr19	16136405	rs4808423	C	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr19	16136923	rs757546	T	C	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:99,101:0.51:200
chr19	16137025	rs757547	C	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	16137052	rs757548	A	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	16145371	rs116326280	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr19	16145423	rs58028036	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr19	16145533	rs61676158	A	G	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=-0.455;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:96,96:0.50:192
chr19	16145539	rs57540331	G	A	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.44;ReadPosRankSum=-0.136;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:97,88:0.48:185
chr19	16145653	rs73513754	G	A	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:126,91:0.42:217
chr19	16145731	rs73513755	C	A	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:115,109:0.49:224
chr19	16146400	rs17683335	A	G	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:167,137:0.45:304
chr19	16146506	rs114713347	C	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr19	16146783	rs115283491	C	T	2894.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:183,151:0.45:334
chr19	16178587	rs4808031	A	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	16186815	rs10633690	C	CCA	2141.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	16192898	rs3826722	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	16192958	rs3786577	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	16197421	rs2303149	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	16197470	rs111282798	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.620;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	16236371	rs147318507	G	GCTCCTCCCA	2705.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:167,133:0.44:300
chr19	16236557	rs10416989	G	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr19	16238911	rs2233147	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:143,107:0.43:250
chr19	16238945	rs112201102	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:74,107:0.59:181
chr19	16254570	rs114524775	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr19	16254694	rs2446366	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	16259383	rs6512085	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	16259460	rs285290	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	16259623	rs8103852	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.846;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:81,56:0.41:137
chr19	16262382	rs8101434	C	T	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,78:0.49:158
chr19	16263202	rs285286	G	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	16263946	rs1870354	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr19	16265494	rs111524	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	16267890	rs147090383	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	16268207	rs5827321	TA	T	10563.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	16275515	rs6512086	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	16275655	rs6512087	C	T	14535.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,567:1.00:567
chr19	16275772	rs4808461	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	16280634	rs2003419	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	16283852	.	TAC	T	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=26.62;ReadPosRankSum=-0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr19	16301312	rs206231	A	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr19	16308786	.	T	TCGCTGCCGCCGCCACCGCCCTCGGC	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.24;ReadPosRankSum=0.995;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	16320075	rs2290802	C	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	16321047	rs7258138	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	16337423	rs2305939	T	C	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr19	16338532	rs2124904	G	A	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr19	16339069	rs2305937	G	A	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:71,123:0.63:194
chr19	16339715	rs3752797	C	T	4628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.368;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:262,242:0.48:504
chr19	16344528	rs2279060	C	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr19	16345099	rs897774	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr19	16435717	rs8106384	T	C	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	16435853	rs7248864	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.061;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.965;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr19	16436262	rs3745318	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	16487905	rs11086030	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	16513357	rs34782743	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.653;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	16514771	rs873636	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	16539347	rs71178694	G	GAAGA	1089.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=54.49;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	16539356	rs4808510	C	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=39.14;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	16547967	rs114986409	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.799;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	16548465	rs60524006	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	16552914	rs2305781	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr19	16593189	rs138347151	CAACAA	C	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	16593573	rs10403020	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	16596142	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.977;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	16606742	rs3810199	G	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr19	16606766	rs3810200	G	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	16606974	rs199995239	C	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.633;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	16611527	rs62118143	T	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	16611978	rs728116	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr19	16612011	rs728117	T	C	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr19	16612365	rs7251978	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.933;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr19	16612368	rs11397471	A	AT	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr19	16613797	rs61130725	CA	C	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.149;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.015;QD=6.21;ReadPosRankSum=1.200;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	16623991	rs73513172	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr19	16631322	rs2303119	T	C	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr19	16631413	rs73928612	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	16631776	rs8111801	G	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,109:0.47:233
chr19	16633950	rs1043481	T	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	16640544	rs58473148	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr19	16641776	.	C	T	411.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	16644055	rs73514909	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	16665857	rs731617	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	16675879	rs57789040	G	A	4207.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:193,215:0.53:408
chr19	16687870	rs61734286	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:58,72:0.55:130
chr19	16757909	rs706762	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	16758139	rs8103249	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.560;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	16765000	rs113348081	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr19	16770989	rs62116931	A	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:131,100:0.43:231
chr19	16771037	rs62116932	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr19	16772006	.	C	CGGCAGGCG	1041.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	16791443	rs901792	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	16797380	rs3848651	A	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	16841831	rs8108763	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.047;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	16842052	rs8107776	G	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr19	16842110	rs8107871	G	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr19	16855265	rs812847	A	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:106,109:0.51:215
chr19	16856015	rs3848654	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.185;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	16860105	rs706764	G	A	11537.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr19	16860392	rs706763	C	T	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:276,248:0.47:524
chr19	16869926	rs773842	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr19	16872940	rs773852	G	A	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr19	16876099	rs4808526	T	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	16883912	rs773835	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	16890243	rs773930	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr19	16899834	rs112298174	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.998;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	16899838	rs2608737	A	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	16899865	rs2608738	A	G	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	16905474	rs2431802	G	T	184.22	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr19	16923494	rs773894	C	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=28.12;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	16940871	rs143632025	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	16957638	rs2241377	A	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	16976120	.	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=13.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.25;ReadPosRankSum=0.572;SOR=3.906;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	16976128	rs773912	A	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=14.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.690;SOR=3.902;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	16976286	rs773911	A	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr19	16976328	rs80348819	C	T	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.922;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:43,56:0.57:99
chr19	16980907	rs75157030	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	16982278	rs113592958	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	16982290	rs113458902	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	16988476	rs2258663	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.491;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr19	16999897	rs773905	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	16999951	rs2227343	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr19	17000131	rs773904	G	A	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	17000231	rs773903	C	T	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	17000247	rs2227345	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr19	17000632	rs773902	G	A	7290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=0.340;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,283:0.99:285
chr19	17001045	rs2230800	G	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr19	17003789	rs773901	T	G	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	17006965	rs111873774	C	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.211;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:80,62:0.44:142
chr19	17008578	rs2608732	G	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	17010198	rs2227373	G	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr19	17011950	rs77345177	A	AC	8464.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.42;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	17014361	rs112102192	A	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr19	17014480	rs111399374	A	C	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:280,262:0.48:542
chr19	17014771	rs113882468	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	17015428	rs773863	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr19	17025292	rs706761	G	A	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	17049230	rs13345399	G	C	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:104,99:0.49:203
chr19	17056294	rs8100610	G	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr19	17062644	rs8108234	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	17068524	rs1457091	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	17068621	rs1457090	C	G	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr19	17081707	rs9305083	G	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr19	17088299	rs1824152	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	17088319	rs3745335	G	T	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	17091368	rs8103646	T	G	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr19	17091533	rs8100517	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:134,154:0.53:288
chr19	17100552	rs1973093	A	G	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	17100666	rs201399822	G	GA	2575.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr19	17100731	rs8101816	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	17104379	rs75991134	G	A	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:182,228:0.56:410
chr19	17119560	rs897768	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	17137290	rs11878608	A	C	7844.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	17137581	.	C	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=1.068;QD=7.11;ReadPosRankSum=0.566;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	17160564	rs4808557	T	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	17163661	rs2305758	C	T	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr19	17166896	rs3214849	TAA	T	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	17169758	rs2305757	G	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr19	17170540	rs1551552	GG	AT	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	17170885	rs1130222	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:116,126:0.52:242
chr19	17173487	rs3816550	A	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr19	17179789	rs2305754	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	17183918	rs141749941	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.276;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	17186127	rs2305752	A	C	9366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=1.878;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:304,243:0.44:547
chr19	17186136	rs2305751	C	A	9960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=2.469;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:365,285:0.44:650
chr19	17263373	.	C	CAA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=0.608;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	17264639	rs114259211	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	17264961	rs2305769	G	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.465;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr19	17264961	.	GCC	CCT	520	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=2;MMLQ=27;MQ=60.0;NF=6;NR=8;SC=GTCAGAGGCAGCCTGCCCTGG;SbPval=0.7;Source=Platypus;TC=34;TCF=16;TCR=18;TR=14;WE=17264971;WS=17264951;set=Platypus	GT:AD:AF:DP	1/0:20,14:0.41:34
chr19	17264963	rs2305768	C	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-0.514;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	17270044	rs28531775	C	T	297.79	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	17270121	rs76119849	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	17273753	rs12980061	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-2.292;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	17273893	rs7256689	G	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	17278569	rs148627690	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.702;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr19	17278737	rs77144082	C	T	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:104,106:0.50:210
chr19	17278912	rs116558154	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr19	17283303	rs2279008	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.312;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	17283383	rs11463235	A	AG	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	17283657	rs2279006	C	T	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:182,177:0.49:359
chr19	17286438	rs8113494	A	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	17286633	rs10593592	CT	C	187.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.04;ReadPosRankSum=-0.253;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr19	17286663	rs28735424	T	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	17298679	rs7249926	G	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	17298724	rs9305088	G	C	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr19	17298893	rs3826689	G	T	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,80:0.61:132
chr19	17298946	rs3826690	T	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr19	17299009	rs3826691	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	17301706	rs62126162	G	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr19	17301733	rs34092109	T	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	17301863	rs962919	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:111,126:0.53:237
chr19	17301880	rs4808072	T	C	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	17302056	rs962918	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	17302112	rs10541498	ACT	A	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	17303460	rs4808594	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	17303774	rs1545620	T	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr19	17305440	rs1064305	T	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr19	17305781	rs45541337	T	G	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,70:0.44:159
chr19	17306031	rs2279003	T	C	12896.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr19	17308871	rs376329870	CA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.821;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr19	17311725	rs114090615	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.20;ReadPosRankSum=-0.347;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	17316192	rs73931845	G	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,106:0.45:237
chr19	17316261	rs10423542	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr19	17316697	rs12327728	C	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	17317660	rs11882738	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:104,122:0.54:226
chr19	17322415	rs8101691	C	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,48:0.47:103
chr19	17329935	.	CA	C	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.975;QD=4.27;ReadPosRankSum=-1.256;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:114,100:0.47:214
chr19	17330060	rs414528	T	C	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr19	17330651	rs3745162	G	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	17337223	rs2288542	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	17338033	rs891202	C	T	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	17346953	rs74182298	G	A	37.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	17355669	rs73931059	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	17360878	rs3745168	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	17362526	rs10469471	A	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	17362941	rs7247493	A	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	17366110	rs35026554	CA	C	1435.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.949;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=2.061;SOR=2.054;set=HC	GT:AD:AF:DP	1/1:8,83:0.91:91
chr19	17366278	rs4430871	T	C	13880.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr19	17366313	rs12459398	C	T	10922.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr19	17367435	rs9676419	T	C	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	17367585	rs4464206	G	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	17370190	rs11880383	T	G	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	17374726	rs8112782	G	C	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr19	17379558	rs10424178	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-2.268;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr19	17382505	rs10420922	A	T	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	17386760	rs73931066	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.026;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	17387585	rs10416551	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr19	17392483	rs7246262	C	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	17392629	rs35586766	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	17392894	rs8100241	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr19	17393015	rs1864116	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	17393424	rs1864114	A	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=1.803;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	17393504	rs1864113	G	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	17393530	rs8108174	T	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	17394124	rs2363956	T	G	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	17394504	rs891017	A	C	26365.77	.	AC=2;AF=1.00;AN=2;DB;DP=1010;set=Intersection	GT:AD:AF:DP	1/1:1,1001:1.00:1002
chr19	17395003	rs11086065	A	G	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	17395055	rs11882562	C	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	17395182	rs4808614	G	T	143.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	17395192	rs60208686	CT	C	95.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	17396523	rs138115996	T	G	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr19	17396549	rs751599	T	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr19	17396761	rs891018	T	C	96.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	17397477	.	G	GTT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.651;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr19	17397479	rs11880549	G	T	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=1.022;QD=10.83;ReadPosRankSum=3.865;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	17397495	.	GTGTGTT	G	105.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.545;QD=1.92;ReadPosRankSum=2.295;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr19	17397501	rs1465582	T	G	711.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.097;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	17397700	rs10401700	A	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	17412218	rs3745186	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:80,84:0.51:164
chr19	17416590	rs3217329	CT	C	3612.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	17417252	rs2288464	C	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	17424932	rs2288463	A	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	17424947	rs12327712	T	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr19	17434587	rs12977101	T	G	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	17435884	rs755123	T	C	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	17438642	rs8102944	A	G	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	17439034	rs3745191	C	T	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:203,178:0.47:381
chr19	17440542	rs8110408	C	G	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	17441488	rs1529482	C	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	17448961	rs1864112	A	C	20716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-1.354;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:2,805:1.00:807
chr19	17450016	rs3810206	T	C	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	17450038	rs11880362	C	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:106,86:0.45:192
chr19	17450446	rs4808623	G	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17452224	rs3745194	C	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr19	17488141	rs10417806	A	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	17514440	rs919265	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	17514646	rs113321277	T	TGGG	15580.73	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	17516400	rs111617488	A	AGCTGAAAG	7828.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	17531450	rs2303680	G	A	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	17531515	rs73517927	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	17531990	rs10679842	C	CT	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.073;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:39,38:0.49:77
chr19	17532018	rs10403215	A	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr19	17533126	rs2303678	A	G	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr19	17534693	rs2288408	T	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	17535546	rs4808636	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	17535658	rs4808637	A	C	11005.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	17544165	rs10415889	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	17547292	rs4808641	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	17547702	rs77119740	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr19	17556054	rs3810209	A	G	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	17559076	rs4808643	T	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	17571200	rs12984622	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	17571766	rs890839	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	17581567	rs7248545	G	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.115;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr19	17608516	rs11672333	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.057;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	17611490	rs11879407	T	G	9843.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	17612251	rs11668681	T	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	17612308	rs80029046	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr19	17615609	rs10417922	T	C	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	17615724	rs10418172	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	17628587	rs6743	A	G	12556.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	17641391	rs59324033	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	17641667	rs74336438	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,94:0.51:184
chr19	17643065	rs12984143	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr19	17644224	.	CAAA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-0.967;QD=5.08;ReadPosRankSum=0.732;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	17644434	rs74387759	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr19	17648066	rs10402055	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	17648350	rs8107859	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	17650225	rs115590519	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr19	17650229	rs114207587	C	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr19	17650625	rs139596206	GA	G	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	17651370	rs11878663	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	17652888	rs74767124	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr19	17654182	rs76814516	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr19	17657675	rs7250417	G	A	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.024;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:91,78:0.46:169
chr19	17662616	rs76629753	G	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr19	17664418	rs34631213	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr19	17671192	.	C	T	838.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr19	17671382	rs73525772	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr19	17679597	rs3848645	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	17688793	rs13346446	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr19	17691938	rs73524018	G	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:78,76:0.49:154
chr19	17692324	rs8100092	T	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.56;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	17717238	rs115383351	C	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr19	17722758	rs55962550	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	17727401	rs74896310	G	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr19	17728502	rs2287851	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	17729393	rs116759271	A	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr19	17729566	rs60961485	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr19	17729672	rs56145097	T	TG	3300.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr19	17729703	rs79759760	C	T	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:134,107:0.44:241
chr19	17729787	rs56257446	T	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr19	17729842	rs78017859	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	17734488	rs10419420	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	17738295	rs76028049	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,74:0.45:164
chr19	17738527	rs73524097	C	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	17738777	rs78633222	A	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr19	17738850	rs56388321	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	17739976	rs11667290	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	17740217	rs115504223	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:103,92:0.47:195
chr19	17740256	rs77633710	C	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr19	17740316	rs143689299	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	17740892	rs116610921	A	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.904;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	17741047	rs10413821	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.21;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	17741047	.	AACA	GACA,GACG	337	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=24;MQ=59.28;NF=21,12;NR=27,16;PP=176,337;QD=4.39106692807;SC=GTTGGGAGAAAACATCCACCA;SbPval=0.56;Source=Platypus;TC=48;TCF=21;TCR=27;TR=48,28;WE=17741058;WS=17741037;set=Platypus	GT:AF:DP	0/1:1.00:48
chr19	17741050	rs60048755	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.085;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	17741422	rs10417445	G	A	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:3,182:0.98:185
chr19	17744075	rs71162163	G	GC	1256.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr19	17746947	rs4239634	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	17751335	rs73922172	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.239;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	17753824	.	AT	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.284;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr19	17758390	rs142411173	C	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr19	17759289	rs73922174	G	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,71:0.48:147
chr19	17760561	rs11665951	C	T	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	17763230	rs112542073	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr19	17763392	rs1159365	A	G	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	17769166	rs7258943	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	17774512	rs12151017	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	17777431	rs10424761	A	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	17777508	rs9305092	C	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	17778832	rs7248783	A	G	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	17779082	rs115019056	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr19	17780537	rs192602097	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr19	17783142	rs115440236	G	A	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:121,118:0.49:239
chr19	17799246	rs140985715	T	TG	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr19	17830365	rs139755294	C	T	487.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=-0.579;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:3,23:0.88:26
chr19	17830503	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.033;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	17830507	.	GGGCGGCGGC	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=1.307;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	17831137	rs79813703	G	A	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-2.843;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:78,76:0.49:154
chr19	17835709	rs8111340	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:71,71:0.50:142
chr19	17835831	rs3761055	T	G	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:271,248:0.48:519
chr19	17837806	rs7252905	C	A	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:231,238:0.51:469
chr19	17837981	rs7253548	A	G	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:243,160:0.40:403
chr19	17844132	rs74830974	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:57,90:0.61:147
chr19	17844227	rs77093026	G	A	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr19	17844325	rs2287860	T	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr19	17881171	rs12327667	G	A	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	17881552	rs3746197	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	17885270	rs2287859	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	17885308	rs2287858	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	17885325	rs2287857	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	17885336	rs2287856	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	17886940	rs2287854	G	A	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	17887024	rs2287853	T	C	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	17888787	rs4808690	G	A	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	17892193	rs2287852	G	C	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	17892478	rs2042299	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	17892591	rs2042298	A	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	17892796	rs67498129	CTTTTTTTTTTTTTTTT	C	550.90	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr19	17895440	rs112863484	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr19	17922795	rs36686	G	A	11819.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	17931041	rs189597847	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=1.105;QD=7.37;ReadPosRankSum=1.545;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	17932138	rs6523	T	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.337;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr19	17937429	rs3008	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr19	17940817	.	CCTTTCTT	C	4907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=4.302;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.383;QD=19.87;ReadPosRankSum=0.813;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:121,126:0.51:247
chr19	17940820	.	TT	CA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=27;MQ=59.78;NF=34;NR=26;PP=2944;QD=20;SC=ACTCTAGCCTTTCTTCTCAGT;SbPval=0.57;Source=Platypus;TC=132;TCF=74;TCR=58;TR=60;WE=17940837;WS=17940810;set=Platypus	GT:AD:AF:DP	1/0:72,60:0.45:132
chr19	17940822	.	CTTCTCAGT	C	2966	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=5;HapScore=2;MGOF=15;MMLQ=27;MQ=59.76;NF=11;NR=26;PP=2966;QD=20;SC=TCTAGCCTTTCTTCTCAGTAC;SbPval=0.74;Source=Platypus;TC=81;TCF=28;TCR=53;TR=37;WE=17940837;WS=17940810;set=Platypus	GT:AD:AF:DP	1/0:44,37:0.46:81
chr19	17940828	.	AG	A	4945.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.383;QD=19.86;ReadPosRankSum=-0.583;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:122,127:0.51:249
chr19	17940830	.	T	C	4932.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.400;QD=19.73;ReadPosRankSum=-0.542;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:124,126:0.50:250
chr19	17941254	rs2302602	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	17941294	rs2302603	T	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr19	17942005	rs3212774	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr19	17942656	rs150348605	C	T	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:237,143:0.38:380
chr19	17946870	rs3212765	A	AG	679.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr19	17948658	rs3212753	T	C	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:128,132:0.51:260
chr19	17950520	rs35060213	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	17952405	rs3212732	C	T	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:116,125:0.52:241
chr19	17952592	rs3212731	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,39:0.56:70
chr19	17954130	rs3212726	T	C	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr19	17954149	rs3212725	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr19	17954215	rs3212723	G	T	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr19	17954389	rs3212722	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	17954413	rs3212721	GT	TG	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr19	17954494	rs3212719	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	17954524	rs3212718	C	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr19	17954597	rs3212716	C	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:126,139:0.52:265
chr19	17955001	rs3212713	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.72;ReadPosRankSum=0.267;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	17955001	.	CCC	TCT	285	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=2;MGOF=21;MMLQ=21;MQ=60.0;NF=6;NR=3;PP=285;QD=37.6075416514;SC=CCCACACAGCCCCATCCTTCC;SbPval=0.4;Source=Platypus;TC=12;TCF=9;TCR=3;TR=9;WE=17955011;WS=17954991;set=Platypus	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	17955003	rs3212712	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=0.932;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	17955021	rs3212711	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	17958777	rs7254346	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr19	17959012	rs13345965	C	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	17971001	rs58265522	G	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	17972027	rs11880203	T	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr19	17983503	rs34850953	G	T	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.556;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:92,85:0.48:177
chr19	17985291	rs142231563	C	A	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,104:0.46:228
chr19	17988716	rs150814476	GC	G	3391.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:162,139:0.46:301
chr19	18047283	rs4808722	T	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:76,95:0.56:171
chr19	18053340	rs4808105	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	18054110	rs11555958	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chr19	18104155	rs2290640	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.366;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	18108956	rs4808732	C	G	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:147,131:0.47:278
chr19	18110890	rs4808110	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	18110994	rs4808733	T	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	18119399	rs28597966	G	A	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:146,122:0.46:268
chr19	18119461	rs77914712	C	T	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:198,206:0.51:404
chr19	18119678	rs2305738	C	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:112,112:0.50:224
chr19	18120346	rs76737668	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:85,56:0.40:141
chr19	18120760	rs8111135	C	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr19	18121514	rs77039320	C	T	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:155,138:0.47:293
chr19	18123617	rs7255640	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	18123662	rs73925407	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr19	18123738	rs7259041	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	18143993	rs73925409	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr19	18170265	rs3833286	T	TC	927.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	18171886	rs383483	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	18172043	.	GT	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.047;QD=6.26;ReadPosRankSum=-0.720;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr19	18174948	.	C	CT	30.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.366;QD=4.34;ReadPosRankSum=-0.637;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	18179115	rs845379	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	18180451	rs375947	A	G	1810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=2.550;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:99,94:0.49:193
chr19	18218444	rs62123561	A	G	1866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.715;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:74,94:0.56:168
chr19	18218610	rs67234314	A	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	18232778	rs273483	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	18233279	rs273486	C	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	18233283	rs55849352	C	CG	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-1.349;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	18234441	rs740691	C	T	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.421;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:85,79:0.48:164
chr19	18234893	rs372528449	G	A	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:212,184:0.46:396
chr19	18235352	rs123202	T	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	18235424	rs123203	T	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	18242675	rs273497	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	18245512	rs2270623	C	T	3680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.781;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:200,190:0.49:390
chr19	18245807	rs12983325	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-2.503;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:76,60:0.44:136
chr19	18245813	rs273499	T	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.82;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	18248146	rs541225	T	C	12759.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr19	18252829	rs613339	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	18255359	rs8108738	G	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:102,82:0.45:184
chr19	18256092	rs79802934	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,80:0.47:169
chr19	18256418	rs11305984	TC	T	1032.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	18257750	rs2072490	C	T	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=2.245;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:123,101:0.45:224
chr19	18257875	rs273279	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	18258459	rs1566030	A	G	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	18272190	rs2241088	A	C	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	18273047	rs1011320	T	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	18273410	rs2006885	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	18279638	rs273269	T	C	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:211,205:0.49:416
chr19	18344273	rs35421958	AC	A	4390.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	18358783	rs4808122	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	18368329	rs10451485	G	A	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,147:0.46:317
chr19	18368810	rs999813	G	T	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	18369120	rs2891654	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:87,76:0.47:163
chr19	18369211	rs3810434	T	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr19	18369369	rs112818372	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	18376407	rs8110972	T	A	2820.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:130,139:0.52:269
chr19	18376522	rs2277922	T	G	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr19	18377274	rs3746186	A	G	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:84,91:0.52:175
chr19	18377496	rs8104533	C	G	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:269,246:0.48:515
chr19	18377647	rs8103906	G	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	18378219	rs1469023	A	G	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	18391171	rs7249	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	18392873	rs7247222	C	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	18392894	rs7247237	C	T	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=0.783;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:39,51:0.57:90
chr19	18392913	rs7247767	A	G	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-1.594;QD=20.74;ReadPosRankSum=-0.491;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:39,50:0.56:89
chr19	18393032	rs41374745	C	CTCCT	1092.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=61.39;MQRankSum=2.023;QD=20.24;ReadPosRankSum=-1.182;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	18418571	rs78071268	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	18423402	rs2232968	T	C	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr19	18426950	rs2232965	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	18433698	rs2232964	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	18434024	rs2232962	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.80;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	18451361	rs7251109	C	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=0.440;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	18451381	rs7251555	A	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=1.103;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	18453813	rs113926271	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.662;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	18466623	rs8105314	T	C	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr19	18468116	rs78602502	C	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	18497024	rs1059519	G	C	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	18497137	rs6413435	G	A	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:155,142:0.48:297
chr19	18499151	rs1059022	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr19	18499780	rs1227733	A	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	18502728	rs6512264	C	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	18502835	rs6512265	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	18502971	rs112850161	G	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr19	18503019	rs7254789	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	18503093	rs6512266	T	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	18507074	rs34439430	G	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr19	18530494	rs28485917	C	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=2.499;QD=9.17;ReadPosRankSum=-1.179;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	18538742	rs10405636	A	C	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	18538834	rs73523072	G	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:54,72:0.57:126
chr19	18541579	rs11395316	G	GA	4314.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr19	18541592	rs113572512	C	T	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr19	18541785	rs35742476	C	T	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:124,108:0.47:232
chr19	18542000	rs146733624	GGTCCTGGTGACCACTGGTGCCTGA	G	1376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.929;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=5.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=1.286;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:62,38:0.38:100
chr19	18542201	rs113198578	C	T	3838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.431;QD=9.23;ReadPosRankSum=1.493;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:215,201:0.48:416
chr19	18542701	rs10408290	C	T	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:345,313:0.48:658
chr19	18543054	rs10409003	C	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=7.29;ReadPosRankSum=2.922;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr19	18544284	rs151008041	GGGCGGGGGCGCGTC	G	1076.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr19	18544467	rs2288428	T	C	1531.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.600;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.522;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.084;QD=20.98;ReadPosRankSum=-1.118;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr19	18544498	rs2544723	A	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=46.03;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	18544501	rs62122438	C	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.27;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	18544505	rs2544724	G	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=42.86;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	18544677	rs78783575	G	GC	3356.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=36.89;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	18545786	rs1045631	G	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr19	18546029	rs35926638	AG	A	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	18546678	rs2303697	T	C	17617.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr19	18546819	rs73523088	G	A	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:142,157:0.53:299
chr19	18547094	rs112525554	CTG	C	4358.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr19	18547209	rs61743954	G	A	3744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.574;QD=9.88;ReadPosRankSum=-0.437;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:189,190:0.50:379
chr19	18547305	rs4595905	T	A	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	18548884	rs2303696	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	18557657	rs2303692	C	T	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:2,259:0.99:261
chr19	18569295	rs73525115	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	18576484	rs2278238	T	C	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	18650278	rs7247733	T	C	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	18650331	rs116035960	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:148,148:0.50:296
chr19	18650692	rs11086113	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	18652521	rs11574806	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,83:0.48:174
chr19	18653750	.	C	A	2749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=16.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.422;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:98,137:0.58:235
chr19	18675854	rs10692700	G	GGGC	1668.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:81,81:0.50:162
chr19	18679351	rs11086117	C	T	7450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.278;QD=10.33;ReadPosRankSum=0.529;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:349,372:0.52:721
chr19	18685964	rs6554	G	T	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	18699489	rs10415257	T	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	18699990	rs2074174	T	C	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr19	18700047	rs2074175	A	G	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr19	18701499	rs7258589	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.486;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	18703077	rs3170474	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	18704528	rs7256319	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	18707878	rs7247346	A	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	18709175	rs35521276	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr19	18709768	rs8108207	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	18717295	rs188747632	C	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	18726856	rs709679	T	C	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	18729110	rs112872200	G	C	4281.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.270;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=-1.109;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:1,171:0.99:172
chr19	18775077	rs1076235	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:92,86:0.48:178
chr19	18778445	rs10421503	C	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	18857939	rs373778758	AC	A	701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=58.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.137;SOR=0.004;set=HC	GT:AD:AF:DP	0/1:66,37:0.36:103
chr19	18885697	rs60784646	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:85,55:0.39:140
chr19	18895218	rs12327738	G	A	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr19	18897526	rs5827423	A	AG	2797.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	18900147	rs76894490	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	18942888	rs4808161	C	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	18958562	rs73526913	A	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr19	18972679	rs73526918	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	18979324	rs11673194	A	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr19	18980213	rs4808864	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	19011244	rs1127821	T	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	19016303	rs200247935	AGACGCTCTGGGCTGT	A	2277.73	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:105,112:0.52:217
chr19	19021970	rs1468461	T	C	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr19	19022045	rs8111633	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	19023853	rs3177137	T	C	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr19	19030120	rs2231987	G	C	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr19	19032561	rs2231996	C	T	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	19032637	rs2231997	T	C	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	19035159	rs5827425	CT	C	2329.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=35.84;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	19035354	rs2301659	GC	TT	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;JOINED;set=Intersection	GT:AD:AF:DP	0/1:98,85:0.46:183
chr19	19035370	rs1476505	G	C	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:123,120:0.49:243
chr19	19037053	rs2301661	T	C	7012.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:292,344:0.54:636
chr19	19037238	rs59237321	G	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr19	19037294	rs2301662	G	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	19039159	rs73529144	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	19040312	rs1059240	G	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	19042182	rs58183423	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:121,103:0.46:224
chr19	19042387	rs57792670	A	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:118,102:0.46:220
chr19	19042805	rs76696102	C	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr19	19043858	rs73529159	G	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.582;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr19	19045057	rs58877040	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	19105773	rs3180770	G	A	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	19135319	rs6511010	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	19136541	rs4808907	C	T	10373.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr19	19137051	.	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.960;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.634;QD=1.29;ReadPosRankSum=0.321;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr19	19145193	rs2269806	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	19150183	rs12979565	C	T	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr19	19151692	rs8104799	T	C	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	19153801	rs3214143	G	GC	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	19165283	.	G	A	161.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	19168183	rs7258637	C	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	19212823	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.456;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr19	19215612	rs56247515	T	TA	1088.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr19	19230868	rs756791	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	19232739	rs73533248	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	19243843	rs10414676	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	19245771	rs3746259	A	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=2.834;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr19	19256870	rs2238663	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.75;ReadPosRankSum=1.150;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	19267802	rs7256766	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	19267910	rs12162274	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr19	19267990	rs7257072	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	19291568	rs61115485	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr19	19330022	rs73537469	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:153,119:0.44:272
chr19	19348947	rs12981871	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	19351402	rs80001703	G	A	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:205,158:0.44:363
chr19	19359500	rs10423874	C	G	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,67:0.59:113
chr19	19359854	.	TTGTGTGTG	T	142	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9998;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=142;QD=72.5;SC=TTTCCTTCATTTGTGTGTGTG;SbPval=0.56;Source=Platypus;TC=3;TCF=1;TCR=2;TR=2;WE=19359869;WS=19359844;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr19	19369435	rs2074295	A	G	5513.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:282,277:0.50:559
chr19	19372150	rs7257875	C	T	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:77,89:0.54:166
chr19	19372185	rs10422893	G	C	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:170,164:0.49:334
chr19	19375372	rs72999053	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	19378671	rs998732	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	19378986	rs201198499	CTTCT	C	790.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr19	19380596	rs72999063	G	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	19380646	rs2074299	T	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	19380685	rs72999068	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	19380996	rs2074300	G	T	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:132,98:0.43:230
chr19	19381715	rs2074301	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr19	19381728	rs2074302	G	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr19	19381755	rs2074303	C	T	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	19387356	rs2010506	C	T	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	19387743	rs2074550	A	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	19388500	rs8107974	A	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr19	19390185	rs11555053	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	19408209	rs143856162	A	ATTCTGGGCAGGAGCAGTTCTGGCC	1976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=6.377;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.716;QD=23.26;ReadPosRankSum=1.827;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:35,50:0.59:85
chr19	19413381	rs2315022	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	19431420	rs5827441	GT	G	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.751;QD=7.67;ReadPosRankSum=-1.072;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:24,40:0.62:64
chr19	19447933	rs34414052	G	GT,GTT	1685.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=6.624;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.305;QD=17.93;ReadPosRankSum=0.155;SOR=2.612;set=HC	GT:AD:AF:DP	1/2:6,63,25:0.67,0.27:94
chr19	19451591	rs2965190	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr19	19452249	rs2301668	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr19	19453742	rs2965192	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	19459554	rs10421505	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr19	19459800	rs12982276	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr19	19466269	rs2301671	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:54,75:0.58:129
chr19	19466628	rs77536717	G	A	5609.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:205,269:0.57:474
chr19	19545990	rs2916076	T	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	19547086	rs2916077	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	19606481	rs113249403	TA	T	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;MQ=60.31;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	19606634	rs1047361	G	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	19613381	rs892022	G	A	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr19	19613399	rs60542032	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr19	19615981	rs111762799	T	TG	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	19616026	rs3752151	T	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	19625547	rs7250893	A	G	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	19626734	rs80007081	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr19	19626769	rs17684164	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:113,94:0.45:207
chr19	19626781	rs77254326	T	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr19	19637930	rs7251447	A	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	19638218	rs75525243	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr19	19638743	rs45631651	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr19	19639903	rs61418834	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	19643343	rs113527843	A	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,80:0.56:144
chr19	19643636	rs8100927	C	G	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:172,171:0.50:343
chr19	19646272	rs2304098	T	C	11667.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	19648346	rs1054930	G	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	19649327	rs11670761	G	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	19650372	.	C	CAAA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=-0.352;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	19650388	.	A	AGG	234.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.462;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=12.436;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.907;SOR=3.726;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	19650389	rs182557669	A	G	243.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=11.977;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.378;SOR=3.556;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	19651140	rs4808970	A	G	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,103:0.53:195
chr19	19652157	rs76790018	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	19653524	rs34067609	G	A	821.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	19653525	rs10664406	A	AAG	812.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	19654117	rs7252453	G	C	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:106,114:0.52:220
chr19	19654189	rs45556231	G	A	4867.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:191,236:0.55:427
chr19	19655311	rs143050305	G	C	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,92:0.46:199
chr19	19655670	rs11669558	C	T	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:175,163:0.48:338
chr19	19656615	rs61744761	C	T	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:129,121:0.48:250
chr19	19680238	rs58210809	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr19	19735257	rs1266503	G	T	8223.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	19740729	rs880090	C	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	19746151	rs2304128	G	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	19748719	rs112689158	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	19750824	rs11298700	AG	A	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	19751456	rs2043293	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	19753292	rs7248885	G	A	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr19	19754149	rs4808975	G	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr19	19756662	rs10405234	T	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,88:0.51:172
chr19	19758190	rs892035	T	C	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	19765568	rs2288867	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr19	19772722	rs919778	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	19789528	rs2304130	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr19	19910183	rs34277739	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr19	19916736	rs12973032	T	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr19	19946401	rs111457523	A	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:117,87:0.43:204
chr19	19989295	rs10406883	A	G	11191.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	19991079	rs73530903	G	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	19991082	.	G	GT	895.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;MQRankSum=0.394;QD=28.89;ReadPosRankSum=1.624;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr19	20003109	rs8106559	A	G	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	20011811	rs7253941	T	C	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	20012070	rs28590063	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	20046926	rs10416399	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	20116963	rs17679334	C	T	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	20133846	rs7255165	C	T	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	20150075	rs2286920	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	20150125	rs2286921	T	C	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	20150175	rs2286922	G	C	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	20150247	rs2286923	A	C	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	20150380	rs2335896	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	20229486	rs1725935	G	A	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:179,136:0.43:315
chr19	20230264	rs1654275	T	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	20232177	rs11321273	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.674;QD=12.39;ReadPosRankSum=-1.876;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	20242092	rs1654287	C	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.801;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	20242274	rs1618723	G	A	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=1.035;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr19	20242379	.	C	CTTTTTT	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=2.005;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	20295146	rs1097510	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:183,119:0.39:302
chr19	20296738	rs836897	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr19	20297019	rs149807694	T	TTTTA	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	20369503	rs8103002	C	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:143,144:0.50:287
chr19	20414254	rs10425483	A	G	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.172;QD=7.52;ReadPosRankSum=0.941;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:61,43:0.41:104
chr19	20415575	rs73000781	C	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr19	20727463	rs10411329	T	C	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:179,128:0.42:307
chr19	20727932	rs33926	G	A	4078.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:194,206:0.52:400
chr19	20735138	rs58829785	GA	G	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.651;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	20735196	rs7250860	A	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr19	20735272	rs7251976	T	C	11425.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	20736677	rs2562632	A	G	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr19	20806770	rs34554673	T	TCA	1459.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	20806824	rs10409289	T	C	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	20807047	rs10407978	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr19	20808149	rs1991528	A	G	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	20808515	rs1968385	T	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	20828106	rs34588720	C	CAA	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	20828410	rs34679916	A	AAAG	4467.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:120,115:0.49:235
chr19	20844340	rs3217340	G	GAAGT	5273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.925;QD=17.07;ReadPosRankSum=0.920;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:170,139:0.45:309
chr19	20975455	rs62125618	C	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:109,115:0.51:224
chr19	20976742	rs1808542	A	G	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr19	20988555	rs34589343	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.873;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-0.063;QD=9.99;ReadPosRankSum=-0.130;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	21120153	rs34083865	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	21120258	rs61385453	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	21125524	rs11672995	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr19	21203552	rs2081054	C	T	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	21216536	rs3760839	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	21217211	rs1470020	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	21240722	rs61744905	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:104,71:0.41:175
chr19	21299562	rs144063031	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	21299774	rs36125838	T	TATA	3492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.416;QD=23.76;ReadPosRankSum=-0.844;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:58,89:0.61:147
chr19	21300142	rs112722125	A	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:149,96:0.39:245
chr19	21300964	rs111456417	T	C	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,78:0.49:159
chr19	21326358	rs17445374	A	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	21349311	rs7256576	C	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	21477431	rs1781873	T	C	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	21492062	rs547516	G	A	18098.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr19	21493246	.	C	CA	216	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5171;HP=11;HapScore=3;MGOF=12;MMLQ=22;MQ=59.14;NF=10;NR=3;PP=216;QD=17.3076923077;SC=AACTCTGTCTCAAAAAAAAAA;SbPval=0.72;Source=Platypus;TC=29;TCF=21;TCR=8;TR=13;WE=21493266;WS=21493236;set=Platypus	GT:AD:AF:DP	1/0:16,13:0.45:29
chr19	21493258	rs669560	T	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-1.018;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr19	21541806	rs2012013	T	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	21544503	rs12981775	C	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	21544514	rs12981564	A	G	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	21544571	rs1142653	G	A	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	21544714	rs12982282	C	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	21558031	.	G	GTT	1369	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=6;HapScore=1;MGOF=22;MMLQ=24;MQ=59.87;NF=43;NR=75;PP=1369;QD=11.6779661017;SC=GTGTGTGTGTGTTTTTCAGGG;SbPval=0.35;Source=Platypus;TC=167;TCF=55;TCR=112;TR=118;WE=21558039;WS=21558021;set=Platypus	GT:AD:AF:DP	0/1:49,118:0.71:167
chr19	21558311	rs2914645	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	21558818	rs376940300	CA	C	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.054;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:96,53:0.36:149
chr19	21560141	rs1875256	G	A	123.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	21560314	rs138705140	GCA	G	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.152;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:146,27:0.16:173
chr19	21587918	rs7254059	G	T	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.30;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	21588165	rs2650847	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	21588692	rs1055753	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	21606429	rs4621113	G	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	21688495	rs73017722	C	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr19	21688602	rs10420016	C	G	14117.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr19	21719401	rs35782355	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	21736788	rs2562502	T	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	21838002	rs7351091	G	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr19	21838113	rs34320073	A	AGAT	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	21838146	rs7351088	C	T	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.139;QD=16.62;ReadPosRankSum=0.277;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	21838146	.	CA	TG	443	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=27;MQ=60.28;NF=7;NR=7;PP=443;QD=35.4619910616;SC=TGATAACTACCAAGAGCAATA;SbPval=0.44;Source=Platypus;TC=27;TCF=12;TCR=15;TR=14;WE=21838155;WS=21838136;set=Platypus	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	21838147	rs7351087	A	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.139;QD=16.62;ReadPosRankSum=0.231;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	21838240	rs6511279	C	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	21838351	rs7508059	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-2.758;QD=7.80;ReadPosRankSum=0.163;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:71,48:0.40:119
chr19	21838492	rs6511280	C	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr19	21838565	rs6511281	T	C	6050.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:162,162:0.50:324
chr19	21838586	rs76272496	G	A	6220.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:187,176:0.48:363
chr19	21838657	rs7508494	G	A	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:133,183:0.58:316
chr19	21838785	rs10422946	C	T	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:105,111:0.51:216
chr19	21838830	rs10422804	A	C	2812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.085;QD=11.67;ReadPosRankSum=0.121;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:107,134:0.56:241
chr19	21909948	rs7246400	G	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:119,128:0.52:247
chr19	21948748	rs11085493	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	21950302	rs75668513	C	T	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:232,222:0.49:454
chr19	21950402	rs6511291	T	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr19	21991663	rs61733114	A	G	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:114,104:0.48:218
chr19	22000908	.	AT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.425;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	22115982	rs807958	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.63;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	22116015	rs35999740	A	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=-0.566;QD=10.22;ReadPosRankSum=0.703;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	22116023	rs11882353	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=51.49;MQRankSum=0.566;QD=5.35;ReadPosRankSum=-0.703;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	22153495	rs2359812	A	T	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	22153634	rs4456632	G	A	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	22154954	rs2214301	C	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	22157302	rs10419899	G	A	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=25.62;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	22171880	rs4574045	C	T	203.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=25.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	22193451	rs2040654	C	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	22255799	rs200402014	T	TA	2711.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.82;MQRankSum=0.232;QD=22.60;ReadPosRankSum=-3.109;SOR=0.566;set=HC	GT:AD:AF:DP	1/1:4,116:0.97:120
chr19	22256347	rs10423157	G	A	12939.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr19	22256358	rs73930397	A	G	12601.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:2,499:1.00:501
chr19	22256396	rs3752163	G	A	11718.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr19	22364322	rs62000438	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr19	22364492	rs10419666	A	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.15;ReadPosRankSum=1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	22375868	rs8104929	C	T	3285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.433;QD=7.86;ReadPosRankSum=-0.808;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:244,174:0.42:418
chr19	22379587	rs2360001	G	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:100,67:0.40:167
chr19	22469177	rs74550970	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	22469233	rs808373	G	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr19	22469259	rs78807780	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:118,93:0.44:211
chr19	22486535	rs9304996	A	G	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	22487473	rs113594810	T	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.014;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr19	22496625	rs75458675	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	22499853	rs78300029	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr19	22574357	rs200702907	C	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=9.653;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-1.528;QD=1.51;ReadPosRankSum=-1.453;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr19	22574458	rs144753548	A	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:204,115:0.36:319
chr19	22575504	rs116270361	C	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr19	22575777	rs200167484	T	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-1.163;QD=3.41;ReadPosRankSum=-0.789;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr19	22585521	rs35112061	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-7.579;QD=1.50;ReadPosRankSum=1.345;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:106,35:0.25:141
chr19	22604885	rs59044739	G	A	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:189,164:0.46:353
chr19	22783220	rs9305001	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.327;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	22784697	rs13343382	G	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-0.053;SOR=0.091;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr19	22784843	rs11670104	T	G	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.596;QD=8.40;ReadPosRankSum=1.313;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:143,112:0.44:255
chr19	22785134	rs11670207	T	C	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:123,115:0.48:238
chr19	22786020	rs2304141	G	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr19	22786126	rs2304143	T	A	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:158,147:0.48:305
chr19	22836149	rs4346316	T	A	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:273,227:0.45:500
chr19	22836164	rs4435388	G	A	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:279,228:0.45:507
chr19	22836333	rs141262276	C	CTGTTTTTTGTTTTGTTT	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-2.756;QD=19.55;ReadPosRankSum=-0.771;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	22836980	rs3745116	T	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.56;ReadPosRankSum=1.408;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr19	22846623	rs71355986	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-3.976;QD=2.90;ReadPosRankSum=1.521;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr19	22846680	rs12975335	G	C	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:48,8:0.14:56
chr19	22869572	rs60240265	G	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	22869592	rs35335083	A	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.814;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	22938918	rs71357930	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr19	22938990	rs71357931	A	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr19	22939007	rs201970176	T	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.299;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-2.678;QD=9.97;ReadPosRankSum=-3.455;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr19	22939013	rs200413555	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=10.975;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-3.067;QD=9.08;ReadPosRankSum=-2.977;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr19	22939018	rs201522133	C	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=10.120;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-3.544;QD=5.90;ReadPosRankSum=-2.540;SOR=1.531;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr19	22939019	rs199826923	C	T	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=10.171;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-3.490;QD=5.52;ReadPosRankSum=-2.972;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr19	22939026	.	TG	T	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=6.629;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-3.437;QD=3.55;ReadPosRankSum=-2.507;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr19	22939036	rs367903920	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-3.367;QD=1.23;ReadPosRankSum=-1.835;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:70,6:0.08:76
chr19	22941617	rs58653025	T	C	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:126,134:0.52:260
chr19	22941938	rs6511379	T	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chr19	22942325	rs7255780	G	C	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-0.525;QD=6.24;ReadPosRankSum=-0.083;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	22952111	rs34726149	A	G	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:158,153:0.49:311
chr19	22952946	rs12980509	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	22966839	rs71357954	C	T	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:196,164:0.46:360
chr19	23328940	rs7247102	G	A	7199.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr19	23406165	rs2885604	T	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	23406801	rs8110795	G	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr19	23413937	rs7256859	A	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	23414167	rs4932841	T	G	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.576;QD=8.75;ReadPosRankSum=-1.693;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:147,118:0.45:265
chr19	23433107	rs10405424	G	C	3666.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:146,179:0.55:325
chr19	23542290	rs428549	AG	GC	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr19	23542697	rs1821845	G	C	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:165,173:0.51:338
chr19	23545250	rs1044095	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr19	23837145	rs11671053	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	23837365	rs4380159	A	C	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	23845038	rs10418600	T	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=43.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	23845042	rs10418602	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=47.15;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	23869684	rs4020520	G	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	23869823	rs2364624	T	G	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	23869941	rs2364625	A	G	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	23926332	rs10405811	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	23926336	.	G	GT	317.14	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	23927252	rs1818990	C	T	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr19	23927468	rs1818989	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:45,124:0.73:169
chr19	23928045	rs112565768	A	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:123,86:0.41:209
chr19	23928102	rs7248674	C	G	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	23941459	rs6417220	G	A	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	24115369	rs56014490	T	C	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:98,71:0.42:169
chr19	24118136	rs146318689	GC	G	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr19	24345092	rs112811130	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr19	29567046	rs1549945	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr19	29567134	rs1549944	T	C	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.294;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:76,67:0.47:143
chr19	29704002	rs11666764	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=44.05;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	29704010	rs8100724	A	C	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=43.67;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	30017670	rs114569666	G	A	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-1.694;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:64,79:0.55:143
chr19	30019505	rs35111102	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	30020678	rs35700860	T	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	30020752	rs61731469	C	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:133,105:0.44:238
chr19	30021094	rs115230064	G	C	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.585;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=0.459;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:135,102:0.43:237
chr19	30054897	.	C	T	1889.77	.	AC=1;AF=0.500;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,90:0.46:197
chr19	30097268	rs2303754	C	G	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr19	30099457	rs1465585	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	30102951	rs8103310	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,99:0.49:200
chr19	30103153	rs4804893	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.248;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	30156797	rs7254984	G	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	30193721	rs10424582	G	A	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	30303714	rs3218029	T	TC	2561.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	30313523	rs67602822	CCTT	C	577.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	30313576	rs3218069	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.764;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	30314666	rs7257694	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr19	30414572	rs3745643	C	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr19	30414587	rs3745642	G	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr19	30433618	rs117820971	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.363;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	30433668	rs1990903	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	30500118	rs3840928	GTGA	G	3955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.020;QD=8.29;ReadPosRankSum=0.625;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:259,218:0.46:477
chr19	30503162	rs16963628	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr19	31038995	rs1469705	T	C	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,102:0.48:211
chr19	31048232	rs12489	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	31768416	rs3745784	A	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr19	31769763	rs12461253	G	A	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr19	31770009	rs28609894	C	T	3457.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:259,182:0.41:441
chr19	31840190	rs71173962	AG	A	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	31840411	.	TGGA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.447;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr19	31840511	.	G	GC	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=0.231;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	31930388	rs8103449	A	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	31930590	.	AGAG	A	1140.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr19	31930594	.	A	AT	1143.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr19	32083696	rs7245697	T	C	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	32873698	rs2270399	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	32899293	rs2012353	G	A	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.031;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	32902404	rs10410770	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	32927311	rs2302773	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-3.481;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	32930069	rs6510249	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr19	32954725	rs1544511	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr19	32955406	rs7252536	A	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	32971223	rs16967141	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr19	32973077	rs7253039	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr19	33072069	rs10402931	G	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	33072085	rs10405535	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	33072118	rs11084660	C	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	33072266	rs10411464	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	33076973	rs10500262	T	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	33089316	rs115207613	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr19	33098632	rs2302970	G	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr19	33098870	rs2903755	C	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.338;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr19	33098875	rs2868150	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=1.026;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr19	33106390	rs614370	T	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.12;ReadPosRankSum=-0.431;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	33106460	rs28412545	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr19	33106621	rs405858	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:132,143:0.52:275
chr19	33106721	rs10409374	C	T	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:125,97:0.44:222
chr19	33106742	rs395136	A	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	33106761	rs414496	A	G	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr19	33108662	rs200142873	T	TC	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.12;ReadPosRankSum=1.282;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	33110149	rs28615461	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	33110204	rs2287669	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr19	33117842	rs6510272	C	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr19	33119883	rs6510274	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	33130496	rs11084666	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.16;ReadPosRankSum=-1.424;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	33131119	rs58827552	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr19	33131336	rs10416829	T	C	4344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.244;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:171,218:0.56:389
chr19	33133936	rs3841621	CG	C	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	33134425	rs259229	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr19	33134635	rs259228	A	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	33135458	rs259225	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	33137322	rs77081774	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr19	33137629	rs259220	T	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	33140719	rs7246047	C	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr19	33149768	rs259251	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr19	33149991	rs259252	G	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:83,99:0.54:182
chr19	33150044	rs375738394	TC	T	306.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.381;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr19	33150045	rs35323163	CT	C	93.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=2.857;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr19	33167113	rs116046448	GC	AA	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr19	33167455	rs259290	G	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr19	33167879	rs259291	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=1.579;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	33182802	rs8108837	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	33183291	rs8108621	G	A	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:204,205:0.50:409
chr19	33183316	rs8109823	A	G	4511.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:133,124:0.48:257
chr19	33183352	rs61732600	G	C	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:80,83:0.51:163
chr19	33211069	rs13346373	C	T	5085.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=79.137;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=17.54;ReadPosRankSum=2.970;SOR=6.074;set=HC	GT:AD:AF:DP	1/1:8,282:0.97:290
chr19	33239450	rs4805805	C	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	33240570	rs9783983	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	33247965	rs75257288	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr19	33248184	rs62126489	A	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	33264348	rs12608647	G	T	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	33281924	rs11881633	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	33282109	rs11878874	C	T	225.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	33289463	rs4805811	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.30;ReadPosRankSum=-0.674;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	33292568	rs12976876	A	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	33293948	rs35110475	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,63:0.56:113
chr19	33294082	rs10404371	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	33304690	rs8107900	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	33304711	rs67051599	ATTTG	A	302.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=2.503;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	33304713	rs8111278	T	C	465.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-2.463;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr19	33304717	rs61062732	T	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=2.604;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	33308824	rs34549089	AG	A	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	33308875	.	C	CA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.650;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr19	33316928	rs140235732	G	GTA	814.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.03;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	33321717	rs10645053	A	AGG	3113.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	33332952	rs2287882	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	33333155	rs2287881	G	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:109,95:0.47:204
chr19	33349488	rs2287879	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	33351695	rs2287878	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	33353041	rs1007161	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr19	33353061	rs1007160	G	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr19	33353343	rs11084671	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr19	33353464	rs11084673	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:97,96:0.50:193
chr19	33355055	rs12150889	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr19	33355081	rs35170371	G	A	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr19	33355513	rs12150904	A	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr19	33390796	rs10418340	G	A	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	33392087	rs7253415	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	33406442	rs7246178	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	33406484	rs7260149	G	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.92;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	33406493	rs35219657	G	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.229;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	33406549	rs7246326	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	33409048	rs59487918	GC	G	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	33409054	rs2278402	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	33409061	rs2278403	G	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.35;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	33409413	rs2278404	G	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	33414420	rs4805825	A	G	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.316;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:144,152:0.51:296
chr19	33418037	.	C	CCCAT	486.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.44;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	33430816	rs12461782	T	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.758;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr19	33439158	rs12710001	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	33444453	rs75223967	T	G	7934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.231;QD=16.16;ReadPosRankSum=3.892;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:134,357:0.73:491
chr19	33444456	rs2944021	A	G	8451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.474;QD=16.41;ReadPosRankSum=0.921;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:198,317:0.62:515
chr19	33444479	rs79480383	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.487;QD=2.09;ReadPosRankSum=-0.145;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:469,119:0.20:588
chr19	33444511	rs80283382	T	C	8808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-5.220;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:241,382:0.61:623
chr19	33462564	.	T	TA	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=1.909;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:67,96:0.59:163
chr19	33467515	rs3816032	T	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr19	33467620	rs7247715	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	33470874	rs8099835	A	G	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.492;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr19	33481388	rs7250684	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	33486810	rs4805026	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	33486822	rs8110267	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	33487071	rs12610600	G	C	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,297:0.99:299
chr19	33487182	rs11084689	A	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	33487251	rs8110730	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	33490429	.	G	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=12.693;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-4.686;QD=6.16;ReadPosRankSum=-2.573;SOR=3.967;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	33490442	.	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.537;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=14.784;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-4.530;QD=7.51;ReadPosRankSum=-2.324;SOR=3.890;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	33490462	.	G	A	512.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr19	33490480	rs74603434	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr19	33490566	rs201801079	T	C	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-4.687;QD=4.62;ReadPosRankSum=2.409;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:154,71:0.32:225
chr19	33490585	rs78615454	G	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.11;MQRankSum=-2.914;QD=1.88;ReadPosRankSum=1.939;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:188,47:0.20:235
chr19	33490667	rs200498530	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-8.113;QD=4.16;ReadPosRankSum=-4.606;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr19	33490685	rs8109247	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=24.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	33493334	rs12610963	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.657;QD=7.54;ReadPosRankSum=0.609;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr19	33502714	rs2288854	A	G	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.521;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:51,51:0.50:102
chr19	33512632	rs34594918	CA	C	28588.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;MQRankSum=-0.196;QD=36.51;ReadPosRankSum=0.841;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:4,779:0.99:783
chr19	33572089	rs28372855	G	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	33579018	rs35343047	CT	C	317.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=2.063;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr19	33579128	rs7259333	T	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	33584176	rs35647730	C	CT	163.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr19	33584479	rs12460195	G	A	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	33584491	rs12460349	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr19	33585219	rs58636263	CT	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.504;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	33586739	rs13345542	G	C	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	33592301	rs10410778	C	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	33597816	rs10408093	T	C	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	33597930	rs3760893	C	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	33600764	rs2287679	T	C	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	33602757	rs10420258	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:91,71:0.44:162
chr19	33602856	rs3786934	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr19	33602881	rs3786933	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr19	33603288	rs3837972	AC	A	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	33604531	rs8103733	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	33605300	rs10416265	A	G	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	33605312	rs10421769	T	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	33608733	rs2287681	C	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	33610060	rs8113398	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr19	33617583	rs6510356	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:83,74:0.47:157
chr19	33620855	rs59303077	G	GA	77.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-1.221;QD=8.65;ReadPosRankSum=0.765;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	33620897	rs3826906	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	33620993	rs35506888	T	TCC	3212.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=44.62;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	33628438	rs10402746	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	33635761	rs3848596	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:117,98:0.46:215
chr19	33635853	rs3848597	G	A	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr19	33635877	rs3848598	T	C	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=0.180;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr19	33635887	rs3848599	T	G	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=1.276;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:60,39:0.39:99
chr19	33635991	rs10410058	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-2.924;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	33636010	rs10411610	C	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.467;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	33642273	rs12327849	A	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr19	33663189	rs10422125	T	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.81;ReadPosRankSum=-1.115;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	33685836	rs60145560	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.374;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	33695830	rs11666900	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr19	33696708	rs2112800	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr19	33698291	rs3745974	T	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:57,89:0.61:146
chr19	33698655	rs376080905	C	CGG	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=1.198;QD=15.55;ReadPosRankSum=-0.375;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	33699664	rs57394649	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=2.086;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	33700445	rs2303093	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr19	33703103	rs11669156	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr19	33703625	.	C	T	329.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	33703706	rs11673535	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.061;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	33878198	rs1061338	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	33878837	rs17570	G	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.338;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr19	33902419	rs78453918	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	33953743	rs6510386	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	33953800	rs78198054	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr19	33981054	rs2288469	G	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr19	33984050	rs10411395	T	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.378;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:74,89:0.55:163
chr19	34012861	rs40500	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr19	34288178	.	TGTGTGTGTGTGC	T	1324.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=4.649;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.85;ReadPosRankSum=1.096;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr19	34288190	.	C	T	484	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=58.1;NF=13;NR=8;PP=484;QD=24.7033910737;SC=TGTGTGTGTGCGCGCGCGCGC;SbPval=0.25;Source=Platypus;TC=39;TCF=28;TCR=11;TR=21;WE=34288210;WS=34288168;set=Platypus	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	34288202	rs1139231	C	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr19	34302673	rs3215257	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.049;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:67,29:0.30:96
chr19	34304214	rs73039070	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr19	34304260	rs60235724	A	AT	2006.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	34513633	rs148997846	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr19	34687746	rs3119815	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=-0.647;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	34706440	rs57270694	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,43:0.48:90
chr19	34710532	rs2297521	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr19	34710807	rs2599557	A	C	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	34712654	rs536367	C	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr19	34712736	rs537252	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	34717269	rs67394960	CAT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.313;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr19	34824582	rs35956890	G	GT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.886;QD=4.44;ReadPosRankSum=-0.322;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr19	34842488	rs392340	T	C	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:100,88:0.47:188
chr19	34843761	rs397414	C	A	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:138,169:0.55:307
chr19	34843874	rs72121022	AGCCTGCCT	A	708.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	34859457	rs2099099	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr19	34870256	rs2278266	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	34872355	.	G	GT	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.153;QD=0.73;ReadPosRankSum=1.017;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:170,42:0.20:212
chr19	34872382	rs1864139	G	A	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.860;QD=8.12;ReadPosRankSum=0.445;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:142,107:0.43:249
chr19	34885006	rs8108038	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr19	34890322	rs2301263	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr19	34922865	rs3217243	T	TGTATAAA	1356.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	34934898	rs17379565	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	34942872	rs2161472	A	T	675.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	34954873	rs10412944	C	G	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	34959812	rs7258977	A	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr19	34959979	rs7259160	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr19	34971763	rs7257588	T	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr19	34971846	rs4344866	C	T	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:143,143:0.50:286
chr19	34971998	rs7248705	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr19	34972146	rs7248847	G	C	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-2.186;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:91,95:0.51:186
chr19	34972892	rs12609305	A	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	34973413	rs1465433	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	34973476	rs8107479	G	A	177.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	34981191	rs2902629	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	34981505	rs4321301	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr19	34985466	rs11671685	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr19	34986767	rs35126035	A	C	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-0.658;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:40,31:0.44:71
chr19	34986776	rs35570240	G	A	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.317;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr19	35036089	rs7259820	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	35173620	.	CCTT	C	897.73	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr19	35175208	rs2290652	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr19	35175775	rs11543232	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:117,101:0.46:218
chr19	35231472	.	T	TA	30	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=0.9998;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=30;QD=22.0;SC=TTCAAATAGTTAAAAAAAAAC;SbPval=0.74;Source=Platypus;TC=4;TCF=2;TCR=2;TR=2;WE=35231480;WS=35231462;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr19	35249884	.	A	G	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.201;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	35256372	rs113781383	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	35270362	rs11673342	G	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	35420841	rs2546001	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr19	35420966	rs2651123	A	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	35424504	rs2859486	C	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=1.032;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr19	35424739	rs2546002	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	35424759	rs2651101	G	C	102.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	35434238	rs1811	A	G	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr19	35434438	rs8100497	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr19	35434512	rs2651109	T	C	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr19	35435006	rs1345658	G	A	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:123,124:0.50:247
chr19	35435069	rs765746	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:73,75:0.51:148
chr19	35435589	rs3761066	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr19	35448803	rs1063235	C	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	35449082	rs3746243	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:61,57:0.48:118
chr19	35450229	rs2651079	C	T	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:209,177:0.46:386
chr19	35451152	rs34260548	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,60:0.44:136
chr19	35454604	rs2546028	AA	CG	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	35491326	rs3072398	A	AGCCCT	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.00;QD=44.55;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	35496994	rs12459310	T	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	35500354	rs147225158	GTC	G	968.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr19	35500919	rs11084797	T	C	7148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.006;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:354,355:0.50:709
chr19	35501051	rs2290642	T	C	6440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-2.022;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:318,326:0.51:644
chr19	35502352	rs140658050	CCT	C	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.859;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.410;QD=0.75;ReadPosRankSum=0.779;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:559,120:0.18:679
chr19	35502534	rs3746258	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	35504627	rs7251988	C	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	35510102	rs2290646	G	C	2099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.064;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:181,118:0.39:299
chr19	35524824	rs55742440	T	C	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:145,157:0.52:302
chr19	35525060	.	T	A	969.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr19	35533550	rs11399986	A	AC	2756.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	35541330	rs57035236	TA	T	488.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	35556281	rs2305745	G	A	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:121,139:0.53:260
chr19	35556300	rs2305746	A	G	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:115,117:0.50:232
chr19	35556357	rs2305747	C	T	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr19	35556640	rs1688031	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	35556659	rs1672991	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	35556744	rs1688030	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	35577870	rs7250814	G	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:141,158:0.53:299
chr19	35590180	rs1687994	T	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	35597215	rs10422803	C	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	35597352	rs2445826	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	35597462	rs10424084	A	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:245,186:0.43:431
chr19	35597620	rs10423723	C	T	2173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=4.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.199;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:119,111:0.48:230
chr19	35597729	rs7258700	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr19	35602014	rs4806085	T	C	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:169,169:0.50:338
chr19	35602338	rs11665663	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.982;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	35602445	rs199877070	TGGG	T,TGG	275.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:0,2,5:0.29,0.71:7
chr19	35608092	rs1006162	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	35608148	rs1688021	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	35609972	rs10543115	GGAC	G	1489.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr19	35609981	rs10426785	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr19	35610245	rs2278994	A	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr19	35612168	rs1688016	T	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr19	35612286	rs2290650	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=2.044;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr19	35613623	rs1688017	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	35614272	rs937088	A	G	1190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.837;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:60,45:0.43:105
chr19	35614274	rs937089	G	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.713;QD=8.35;ReadPosRankSum=0.849;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr19	35614336	rs1672974	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:101,60:0.37:161
chr19	35615995	rs14358	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	35616016	rs1048690	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	35616086	rs11084800	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,70:0.52:134
chr19	35616315	rs12610146	GC	AT	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;JOINED;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr19	35616464	rs12976269	G	C	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr19	35616562	rs12978414	C	G	4360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.006;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:220,220:0.50:440
chr19	35616663	.	A	T	5926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DP=664;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.384;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:351,305:0.46:656
chr19	35616692	rs1672976	C	T	4840.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:304,254:0.46:558
chr19	35616953	rs1632457	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	35617122	rs937087	A	G	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:171,148:0.46:319
chr19	35617270	rs1319969	T	C	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:118,90:0.43:208
chr19	35617639	rs1687998	C	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr19	35622492	rs1688001	C	T	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr19	35622695	rs1673007	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	35624890	rs11666576	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr19	35632165	rs151269496	TCTGGCCCCGCCTCTCCCTGGCCCCGCCTCTCCCTAGCCCCCCTCTCC	T	1474.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr19	35648264	rs12980648	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr19	35648365	rs1688005	T	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr19	35649324	rs1633915	C	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr19	35651531	rs1617607	A	G	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-2.249;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:36,54:0.60:90
chr19	35655151	rs1672994	T	C	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:104,91:0.47:195
chr19	35657351	rs8106303	A	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr19	35660450	rs2285515	T	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr19	35660508	rs12110	G	A	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.423;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr19	35660546	rs1046294	T	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.613;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr19	35715641	rs2291532	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	35718819	rs542977	C	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	35718938	rs564117	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:173,108:0.38:281
chr19	35719020	rs541169	C	T	13214.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr19	35719106	rs565791	A	G	13614.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr19	35739702	rs16970163	G	A	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	35757427	rs34259399	G	A	2184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=0.060;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:130,111:0.46:241
chr19	35757469	rs12459658	A	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.142;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:46,59:0.56:105
chr19	35757913	rs73599063	G	T	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:107,121:0.53:228
chr19	35758275	rs142507475	G	GGGA	4002.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr19	35760930	rs150053370	TG	T	203.86	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr19	35770056	rs2280746	G	A	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:134,123:0.48:257
chr19	35770174	rs12742	A	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	35785147	rs56138004	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:86,100:0.54:186
chr19	35786868	rs2301600	C	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:165,98:0.37:263
chr19	35790503	rs3746248	G	A	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,150:0.52:289
chr19	35793589	rs1126770	C	T	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:130,105:0.45:235
chr19	35800720	rs10411883	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	35801423	rs199740655	G	A	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.710;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:111,99:0.47:210
chr19	35829381	rs7248108	A	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,58:0.52:112
chr19	35835940	rs45453699	C	T	6826.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	35836859	rs4805120	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	35837428	rs12985354	G	A	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr19	35843086	rs2301151	G	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	35849926	rs79251979	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:187,98:0.34:285
chr19	35849933	rs138919331	G	A	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:199,86:0.30:285
chr19	35850672	rs142125121	T	C	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.73;MQRankSum=-2.254;QD=9.43;ReadPosRankSum=-1.089;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:69,55:0.44:124
chr19	35863141	rs201960715	T	C	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	35863180	rs201159994	A	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=45.21;MQRankSum=-1.939;QD=16.42;ReadPosRankSum=0.787;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr19	35863272	rs139311031	T	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-2.558;QD=9.66;ReadPosRankSum=0.903;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:46,46:0.50:92
chr19	35899217	rs112268455	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	35941673	rs77990508	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	35978577	rs2293690	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr19	35979172	rs11084815	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr19	35991043	rs11666154	G	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-0.620;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:27,42:0.61:69
chr19	35991373	rs2293695	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:100,73:0.42:173
chr19	35991442	rs909072	T	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	35992691	rs8100640	A	G	6625.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:375,349:0.48:724
chr19	35993661	rs11084816	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	35994376	rs149163465	GTT	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-0.589;QD=31.19;ReadPosRankSum=0.282;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	35994384	rs3829678	T	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-0.589;QD=32.20;ReadPosRankSum=0.282;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr19	35994390	rs3829677	T	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-0.674;QD=32.85;ReadPosRankSum=1.534;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	35997363	rs6510492	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr19	35997644	rs6510494	C	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	35998213	rs4358061	A	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr19	35998362	rs4254439	T	G	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr19	35999251	rs11084818	C	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,49:0.52:95
chr19	36002418	rs72334573	GCCA	G	3809.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:144,103:0.42:247
chr19	36003962	rs7247001	T	C	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:231,172:0.43:403
chr19	36004106	rs4806163	A	G	5645.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:337,287:0.46:624
chr19	36017928	rs10775583	G	C	9120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.852;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:404,443:0.52:847
chr19	36018272	rs12461911	C	T	5566.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:203,274:0.57:477
chr19	36019162	rs79732514	C	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr19	36024296	rs74409639	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr19	36033460	rs2239945	C	T	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:153,117:0.43:270
chr19	36038221	rs759996	T	C	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:102,91:0.47:193
chr19	36038390	rs7599	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr19	36042207	rs2301617	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	36044524	rs2251124	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	36045772	rs2733739	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	36048741	rs2230181	G	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.572;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:56,30:0.35:86
chr19	36048791	rs748214	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.851;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	36050969	rs2733743	A	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	36051820	rs60726757	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr19	36051872	rs3746283	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr19	36053448	rs10422358	G	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr19	36054605	rs73597298	T	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	36054622	rs73597299	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	36106337	rs3814983	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr19	36109063	rs374601138	A	G	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:147,110:0.43:257
chr19	36113459	rs2285413	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	36113658	rs2285414	A	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:85,77:0.48:162
chr19	36122441	rs2285415	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	36124176	rs8106576	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr19	36128295	rs2285416	G	A	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:141,123:0.47:264
chr19	36135279	rs3835005	C	CT	4359.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	36135793	rs6510501	A	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:98,58:0.37:156
chr19	36145409	rs377609041	CA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.361;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr19	36168914	rs2285421	T	C	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	36206986	rs2234371	G	A	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	36214632	rs11373774	A	AG	1233.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	36216056	rs3848662	G	T	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chr19	36221051	rs2242520	G	A	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.469;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:70,82:0.54:152
chr19	36224705	rs231591	A	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	36228199	rs371228485	C	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	36230174	rs12459634	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr19	36235431	rs3761087	A	G	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	36235928	rs2293686	A	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	36236120	rs231597	A	G	12993.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr19	36236909	rs10402601	G	C	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	36237245	rs2293688	C	G	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	36239484	rs3746277	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr19	36243089	rs170758	T	C	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	36243190	rs231244	T	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr19	36243542	rs28504464	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	36243813	rs231243	G	A	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	36246418	rs11549030	C	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	36253317	rs807479	C	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	36257932	rs35876904	CCT	C	2397.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	36258061	rs115018933	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	36258937	rs5827939	AG	A	6838.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	36259480	rs113059159	C	CT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.560;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	36269475	rs35902249	C	T	2597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.686;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:122,130:0.52:252
chr19	36273534	rs2291067	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:70,91:0.57:161
chr19	36275074	rs62112163	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr19	36276086	rs2239949	C	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=2.435;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr19	36277637	rs114957589	C	T	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-1.545;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:123,77:0.39:200
chr19	36279862	rs59882609	AG	A	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	36290900	rs1133745	C	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	36291057	rs114228438	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-2.110;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:98,69:0.41:167
chr19	36304179	.	G	A	191.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	36322509	rs466452	G	A	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	36334419	rs437168	G	A	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:189,147:0.44:336
chr19	36335391	rs144353637	ATTG	A	2898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=-0.285;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:85,76:0.47:161
chr19	36336258	rs528950	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr19	36339063	rs392702	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:111,107:0.49:218
chr19	36339385	rs417786	G	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:100,71:0.42:171
chr19	36342053	rs396178	C	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr19	36342103	rs412175	T	C	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,80:0.61:131
chr19	36348078	rs446014	A	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.390;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:46,51:0.53:97
chr19	36348198	rs393116	A	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.054;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	36348458	rs435259	G	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.463;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr19	36349752	rs404299	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr19	36353880	rs35775934	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:106,68:0.39:174
chr19	36355595	rs382789	A	G	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	36355769	rs7248352	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	36365368	rs230263	C	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr19	36365786	rs230264	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr19	36370011	rs2227909	G	A	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:162,152:0.48:314
chr19	36370223	rs11084834	T	G	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:165,145:0.47:310
chr19	36370352	rs2871778	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,76:0.46:166
chr19	36387746	rs61288857	G	C	7091.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:278,347:0.56:625
chr19	36387881	rs8113704	A	G	5959.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:224,285:0.56:509
chr19	36388506	rs73928350	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr19	36388559	rs73928352	G	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr19	36389579	rs73928355	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr19	36393165	rs112961429	C	T	2553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.324;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:226,143:0.39:369
chr19	36393186	rs11878547	T	C	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:224,153:0.41:377
chr19	36394245	rs74258162	T	C	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:205,178:0.46:383
chr19	36394272	rs33964243	T	C	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:224,206:0.48:430
chr19	36394678	rs8106495	T	C	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.738;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:119,102:0.46:221
chr19	36394834	rs8106480	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr19	36394858	rs8105153	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	36395110	rs74610942	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr19	36395446	rs1802029	T	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr19	36435928	rs79027052	GC	G	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.22;ReadPosRankSum=0.414;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	36486445	rs7249826	G	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	36496121	rs10469279	A	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.019;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr19	36497358	rs2285422	C	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	36508392	rs2073896	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr19	36515560	rs10403729	A	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr19	36517655	rs10418015	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr19	36536938	rs7258807	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	36558113	rs12608517	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	36564438	.	GC	G	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=54.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.876;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr19	36574063	rs45567532	C	T	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=1.223;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:92,92:0.50:184
chr19	36577579	rs4806263	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr19	36577821	.	G	C	262.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	36583651	rs61494900	G	A	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:193,198:0.51:391
chr19	36585174	rs62109756	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	36590329	rs2285745	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr19	36594063	rs17851502	C	T	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:151,126:0.45:277
chr19	36594659	rs2074435	A	T	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:291,242:0.45:533
chr19	36595436	rs1008328	A	C	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:177,139:0.44:316
chr19	36603703	rs2072605	T	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr19	36605647	rs2227260	T	C	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.906;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:104,144:0.58:248
chr19	36605794	rs2231568	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	36606379	rs199646187	C	CCAG	370.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	36612396	rs2075474	A	G	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.933;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:167,74:0.31:241
chr19	36616702	.	T	C	713.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr19	36633277	rs2075475	C	G	5250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.538;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:272,269:0.50:541
chr19	36640769	rs14100	T	C	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	36642310	rs2008683	T	C	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	36642561	.	G	GC	1380.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=10.496;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=4.36;ReadPosRankSum=3.299;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:237,80:0.25:317
chr19	36642562	rs2285599	A	C	1443.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=11.377;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=4.50;ReadPosRankSum=3.435;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:239,82:0.26:321
chr19	36642874	rs17879731	T	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr19	36643432	rs139129236	CGGGGCT	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.358;QD=3.35;ReadPosRankSum=-0.857;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr19	36674305	rs4805162	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,64:0.42:153
chr19	36685753	rs7259854	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	36686103	rs114258457	T	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr19	36727365	rs2070132	G	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	36896680	rs114189513	G	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	36940760	rs2967532	G	T	9075.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr19	36940965	rs2912441	A	G	147.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	36963637	rs2967539	C	T	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	36964376	rs2967540	C	T	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	36967352	rs150830509	T	TTTTC	813.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	36981218	rs2967473	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	37004938	rs2967505	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	37039069	rs2912444	A	C	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	37039226	.	TGAAA	T	397.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	37064240	rs2967442	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr19	37064267	rs3096618	C	T	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	37065914	rs3108597	G	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	37068081	rs2912410	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	37068235	rs3108598	T	C	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.173;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr19	37155495	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.47;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	37185813	rs36094586	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=2.473;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	37239278	rs11672680	C	A	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	37241141	rs1673082	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.91;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	37310344	rs3745775	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	37399412	rs10418144	C	T	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:114,99:0.46:213
chr19	37406662	rs8101922	C	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.217;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.098;QD=16.66;ReadPosRankSum=1.244;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr19	37406671	rs2010342	G	C	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.134;QD=15.22;ReadPosRankSum=1.565;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:47,35:0.43:82
chr19	37413945	rs34898479	T	TG	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	37416022	rs1667382	C	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	37441111	rs571294	C	T	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	37441365	rs547483	T	C	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:71,92:0.56:163
chr19	37441462	rs546589	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	37441980	rs1644634	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	37465414	rs1375477	A	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	37482068	rs1644679	T	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	37482151	rs1667354	A	G	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	37482765	rs1644681	T	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.65;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	37482772	rs1644682	G	A	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.22;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	37482803	rs78428491	T	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr19	37482817	rs2547049	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	37487632	rs935706	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	37487723	rs935707	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	37487866	rs1667363	A	T	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	37487873	rs1667364	C	A	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	37487975	rs16971886	G	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:70,123:0.64:193
chr19	37488055	rs10405238	T	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr19	37488197	rs1345748	G	A	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	37488299	rs1363752	A	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	37488472	rs1644698	C	G	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	37488481	rs1363753	G	C	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	37488499	rs1667366	T	C	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	37488565	rs3745770	C	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr19	37488677	rs3833257	G	GA	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr19	37579810	rs35162188	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	37605917	rs7258360	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	37606028	rs4806412	T	C	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	37642830	rs139215663	G	A	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:121,116:0.49:237
chr19	37642917	rs77675231	G	A	11165.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.82;MQRankSum=-0.632;QD=43.79;ReadPosRankSum=-0.510;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,254:1.00:255
chr19	37642922	rs79071992	C	T	11022.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.70;MQRankSum=-0.645;QD=44.63;ReadPosRankSum=-0.452;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,246:1.00:247
chr19	37643522	rs61733481	C	T	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:113,128:0.53:241
chr19	37643777	rs16972020	C	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:134,107:0.44:241
chr19	37644051	rs57916401	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr19	37676528	rs75662394	G	A	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:160,156:0.49:316
chr19	37677748	rs45626541	T	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	37681098	rs28701616	G	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:149,116:0.44:265
chr19	37689998	rs12459637	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr19	37690332	rs34213131	TG	T	496.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	37690420	rs1234250	C	T	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	37690532	rs11299786	CA	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr19	37721404	rs56895666	T	TA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.254;QD=3.47;ReadPosRankSum=0.196;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr19	37825633	rs10404602	A	T	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:162,91:0.36:253
chr19	37854235	rs3745765	G	T	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:200,190:0.49:390
chr19	37854580	rs3745764	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:128,112:0.47:240
chr19	37864925	rs61161652	A	AC	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	37918609	rs7254009	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.13;ReadPosRankSum=-1.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	37958983	.	T	TTG	669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=-0.540;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	38033251	rs9797618	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	38039748	rs73617120	T	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	38040076	rs1564206	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	38046946	rs112514764	C	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,54:0.56:97
chr19	38046967	rs10420552	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr19	38047075	rs10420268	A	G	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr19	38055612	rs4802029	A	T	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:78,113:0.59:191
chr19	38056574	rs28512414	T	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr19	38077661	rs8111055	G	A	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	38091932	rs1975937	A	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,64:0.44:147
chr19	38135403	rs2972458	T	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr19	38135444	rs71298747	C	CAAAAAG	2519.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr19	38138887	rs2290999	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	38161070	rs73037036	A	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	38184262	rs17246792	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr19	38189440	rs958305	T	C	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:127,148:0.54:275
chr19	38189616	rs2075284	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr19	38190845	rs5827990	GT	G	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	38202515	rs12461753	G	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-1.239;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:66,45:0.41:111
chr19	38202515	.	GA	AC	309	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=10;NR=12;PP=309;QD=16.4758124937;SC=ACTTACATAGGACATGGTTTG;SbPval=0.66;Source=Platypus;TC=56;TCF=27;TCR=29;TR=22;WE=38202524;WS=38202505;set=Platypus	GT:AD:AF:DP	1/0:34,22:0.39:56
chr19	38202516	rs2909097	A	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.33;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	38229378	rs1291	G	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr19	38229824	rs3095726	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	38314767	rs2305105	A	G	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,66:0.43:152
chr19	38375666	rs73027451	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:99,84:0.46:183
chr19	38376485	rs10408510	T	A	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	38377409	rs7252765	A	T	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	38377564	rs7253969	T	C	12767.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr19	38377773	rs34785154	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:174,114:0.40:288
chr19	38378107	rs60704260	G	A	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:147,175:0.54:322
chr19	38378539	rs10422056	G	C	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr19	38379446	rs6508750	C	T	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	38381043	rs34144200	T	TA	132.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	38382328	rs953370	C	T	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr19	38384278	.	TAAAGG	T	2842.73	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr19	38384421	rs3894129	C	G	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	38385023	rs140579920	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr19	38388630	rs115226645	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	38597326	rs1654370	C	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr19	38621473	rs861304	G	A	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,64:0.51:125
chr19	38652993	rs332864	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:55,55:0.50:110
chr19	38694945	rs148202998	AC	A	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	38696714	rs10419131	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	38697054	rs3745946	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=-1.111;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	38704192	rs28493214	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	38706989	rs2278431	G	A	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	38708398	rs2304175	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr19	38709568	rs2255456	C	T	15286.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr19	38778617	rs8104823	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr19	38794786	rs76682100	T	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	38794895	rs2304176	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr19	38795159	rs2304177	G	A	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:100,107:0.52:207
chr19	38795250	rs45437199	G	A	3215.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:193,163:0.46:356
chr19	38795546	rs139805446	TGAA	T	1548.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr19	38798086	rs3178327	T	C	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:191,200:0.51:391
chr19	38800165	rs3900981	C	T	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr19	38817110	rs7250755	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	38817486	rs3745951	T	C	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:222,186:0.46:408
chr19	38817876	rs34989303	G	A	5031.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:235,252:0.52:487
chr19	38826656	rs59898212	G	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	38826947	rs56849284	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr19	38827960	rs2302182	T	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:100,87:0.47:187
chr19	38847431	rs2286475	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr19	38848796	rs4802351	A	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	38848861	rs8106895	C	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	38850246	rs60071299	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.202;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	38851318	rs8101496	G	A	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:156,141:0.47:297
chr19	38853297	rs2302183	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr19	38872778	rs1131182	C	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	38899501	.	CAAG	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.388;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:86,13:0.13:99
chr19	38905683	rs10412098	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr19	38905792	rs12462583	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	38935280	rs2229139	A	G	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:176,172:0.49:348
chr19	38935350	rs35018208	T	TC	4845.73	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:220,200:0.48:420
chr19	38939408	rs10406027	T	C	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	38939505	rs4476278	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	38942714	rs4802469	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	38943728	rs12460768	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	38945851	rs7254832	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	38946182	rs2288888	G	A	3615.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:149,178:0.54:327
chr19	38946215	rs2288889	G	C	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:104,105:0.50:209
chr19	38948356	rs2071085	T	C	2071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.677;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:102,109:0.52:211
chr19	38948963	rs2071086	C	G	5557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.459;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:371,296:0.44:667
chr19	38949904	rs3745847	C	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr19	38950947	rs2304147	C	T	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr19	38953996	rs2304148	A	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,64:0.44:146
chr19	38956839	rs2228070	C	T	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:137,140:0.51:277
chr19	38958128	rs115703825	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.668;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr19	38959680	rs11083462	C	T	6423.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=0.036;SOR=0.268;set=HC	GT:AD:AF:DP	1/1:1,249:1.00:250
chr19	38964322	rs375709463	C	T	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.975;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:61,80:0.57:141
chr19	38965952	rs55845760	T	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.043;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:64,60:0.48:124
chr19	38976177	rs16972651	T	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.85;ReadPosRankSum=-1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	38979741	rs74778515	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	38979903	rs114203198	G	C	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.007;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:76,77:0.50:153
chr19	38980118	rs16972654	C	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	38983000	.	CA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.799;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr19	38985101	rs75181912	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr19	38991516	rs2228072	G	A	10591.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	38991543	rs2071088	G	A	11450.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	38993372	rs1469695	A	G	5874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.250;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr19	38993438	.	C	G	1949.77	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	38993444	.	C	G	2243.77	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	38993454	rs1469697	A	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	38993456	rs374938724	C	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	38993547	rs2229142	C	T	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr19	38993638	rs1469699	A	G	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr19	38993771	rs111227660	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	38994910	rs2229144	G	A	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	38995152	rs2915949	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	38995355	rs10532729	ACCT	A	1745.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	38995438	rs2960340	T	C	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	38995510	rs2915951	T	C	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	38995975	rs2915952	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	38996066	rs2915953	A	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	38996620	rs2960342	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	38996623	rs2960343	T	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	38996640	rs2915954	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	38996990	rs2229146	T	C	7320.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	38997076	rs2960344	C	T	7694.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	38997214	rs2960345	T	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	38997323	rs2915957	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	38997364	rs35973146	T	TTCA	2938.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	38997459	rs2915958	G	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	38997609	rs2915959	T	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	38997635	rs2960346	A	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	38997679	rs2960347	G	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	38998362	rs79294840	G	A	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:170,168:0.50:338
chr19	38998497	rs5828009	G	GC	1253.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	39001154	rs116537677	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr19	39002725	rs2071089	A	G	8922.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr19	39005843	rs115388991	T	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=1.863;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr19	39005937	rs2915942	G	T	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	39010101	rs143752962	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr19	39019153	rs6508806	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	39019242	rs114351116	C	G	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,85:0.51:167
chr19	39019465	rs141905132	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr19	39019752	rs61441471	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	39037276	rs115019209	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	39039152	rs77584892	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.466;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	39077895	.	AAT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.158;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	39087650	rs8101811	C	T	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:161,131:0.45:292
chr19	39098734	rs41274336	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr19	39127676	rs144992865	G	GC	1839.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr19	39138608	rs2303040	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	39191383	rs2112649	G	C	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	39191544	rs73038909	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.700;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	39196736	rs11553600	G	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr19	39196745	rs3745859	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,78:0.45:173
chr19	39208641	rs148259739	C	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:101,110:0.52:211
chr19	39212392	rs77822825	C	T	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:190,179:0.49:369
chr19	39215333	rs3786851	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	39219050	.	G	GCTCCTCCTC	1166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.220;QD=16.20;ReadPosRankSum=-0.898;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr19	39219780	rs1136956	T	C	2748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.670;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:158,144:0.48:302
chr19	39221715	rs141208726	CCCATGCCCCA	C	1569.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:74,44:0.37:118
chr19	39224413	rs4801861	A	G	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	39226623	.	A	G	81	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=4;HapScore=2;MGOF=99;MMLQ=24;MQ=60.0;NF=5;NR=0;PP=81;QD=23.1542425094;SC=GGGGCGGGGCAGGGGTTCTGG;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=5;WE=39226631;WS=39226613;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	39226648	.	AGGTCTCGGGGGTCTCGGG	A	321	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=52;MMLQ=24;MQ=60.0;NF=1;NR=0;PP=321;QD=331.0;SC=GGGGCAGGTCAGGTCTCGGGG;SbPval=0.34;Source=Platypus;TC=3;TCF=1;TCR=2;TR=1;WE=39226673;WS=39226638;set=Platypus	GT:AD:AF:DP	1/0:2,1:0.33:3
chr19	39227107	rs202243527	TTTGACCAAGCCCCAGGGCAGG	T,TTTGACCAAGCCCCAGGGCAGGTTGACCAAGCCCCAGGGCAGG	2829.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.56;QD=31.79;SOR=0.965;set=HC	GT:AD:AF:DP	1/2:0,45,44:0.51,0.49:89
chr19	39228244	rs73038948	T	C	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:182,172:0.49:354
chr19	39228868	rs34488364	G	GCA	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	39232968	rs35341175	C	CA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.847;QD=0.84;ReadPosRankSum=1.447;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr19	39233146	rs936524	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	39234511	rs4802775	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr19	39279713	rs4802853	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-1.769;QD=2.44;ReadPosRankSum=-0.800;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	39292813	rs74428378	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	39306425	rs2075588	A	C	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.414;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:146,149:0.51:295
chr19	39307893	rs73933065	G	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	39308190	rs15570	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:161,115:0.42:276
chr19	39322087	rs9419	T	G	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,131:0.49:267
chr19	39328145	rs2278010	A	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:138,67:0.33:205
chr19	39329205	rs45510794	C	T	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:193,184:0.49:377
chr19	39329517	rs8111670	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr19	39334811	rs2278011	T	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	39334830	rs2278012	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	39336476	rs73930212	T	C	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr19	39338125	rs862454	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:78,81:0.51:159
chr19	39338142	rs862455	A	G	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr19	39340561	rs79124306	G	A	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.342;QD=8.81;ReadPosRankSum=-0.202;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:85,75:0.47:160
chr19	39359607	rs111788981	T	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.661;QD=2.49;ReadPosRankSum=0.743;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	39359610	rs77414715	T	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.661;QD=2.49;ReadPosRankSum=0.515;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	39360597	rs113728915	C	T	8283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.266;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:467,438:0.48:905
chr19	39360720	rs8110393	G	A	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	39361658	rs8100220	G	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr19	39362252	rs73537683	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	39362610	rs73537686	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.227;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	39364415	rs6508823	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	39366899	rs1529713	A	G	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	39367111	rs1001413	T	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr19	39372244	rs2082435	C	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	39374442	rs45584231	C	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr19	39380030	rs11667030	CA	TG	3053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=-0.431;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:57,79:0.58:136
chr19	39385532	rs10410544	T	C	5286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=2.959;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:326,277:0.46:603
chr19	39390931	rs2053071	C	G	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:80,111:0.58:191
chr19	39395821	rs368928450	G	A	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:153,149:0.49:302
chr19	39398416	rs3136642	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	39400054	rs11404115	T	TA	1376.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr19	39400071	rs78167290	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr19	39407014	rs4801945	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr19	39408360	rs7508411	A	G	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	39408688	rs4803034	C	G	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	39409236	rs11083489	C	A	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	39409379	rs115226793	C	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.266;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr19	39410986	rs12460327	C	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	39412756	rs59946162	A	AT	1719.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:99,113:0.53:212
chr19	39421388	rs730078	A	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	39433136	rs77963530	C	CA	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	39433299	rs8113389	A	G	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr19	39433497	rs11313800	GT	G	862.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	39433499	rs57290038	T	G	871.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	39435485	rs10416055	G	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	39435933	rs11672849	C	G	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	39435999	.	T	A	46	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=6;HapScore=2;MGOF=39;MMLQ=18;MQ=58.33;NF=1;NR=3;PP=46;QD=20.1928031368;SC=GGTCCTGGGGTGGAGCCAGAG;SbPval=0.89;Source=Platypus;TC=23;TCF=10;TCR=13;TR=4;WE=39436007;WS=39435989;set=Platypus	GT:AD:AF:DP	1/0:19,4:0.17:23
chr19	39436031	.	AC	GT	278	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=44;MMLQ=16;MQ=58.17;NF=3;NR=5;PP=278;QD=41.4334843578;SC=AGCCTGGGTGACCCTGGGGTG;SbPval=0.7;Source=Platypus;TC=17;TCF=7;TCR=10;TR=8;WE=39436040;WS=39436021;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	39437035	rs115092523	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	39437258	rs10568003	TCA	T	9688.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr19	39437270	rs2278412	G	A	9682.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	39440918	rs2304117	T	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=2.112;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr19	39440966	rs2304118	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	39522891	rs3848623	T	C	46.98	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	39522939	rs11318441	CG	C	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	39575987	rs544041	G	A	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:214,195:0.48:409
chr19	39589189	rs55878600	C	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:125,120:0.49:245
chr19	39589334	rs560364	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	39589548	rs57824661	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr19	39589549	rs111505227	G	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr19	39589869	rs11326424	CG	C	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	39590853	rs142348602	G	GC	1546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.711;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:112,67:0.37:179
chr19	39590955	rs8110736	G	A	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr19	39591748	rs11673089	G	A	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:204,207:0.50:411
chr19	39664089	.	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr19	39687592	rs12462614	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	39688815	rs12610064	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:70,91:0.57:161
chr19	39688901	rs12610093	G	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr19	39688998	rs116380020	T	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr19	39689943	rs12610530	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	39691136	rs11672471	C	A	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	39691207	rs78285559	C	T	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:154,163:0.51:317
chr19	39691216	rs11672475	A	T	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:173,165:0.49:338
chr19	39691239	rs11672479	A	G	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	39734220	rs4803217	C	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr19	39735106	rs8103142	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr19	39735336	rs142118702	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-1.471;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	39745695	rs35963157	G	GC	3634.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:161,122:0.43:283
chr19	39760069	rs30481	G	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	39789115	rs30461	A	G	9716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=2.475;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:432,473:0.52:905
chr19	39804554	rs12979175	G	A	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr19	39819519	rs139805164	T	TA	1048.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.113;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:37,34:0.48:71
chr19	39819527	rs3837980	C	A	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.976;QD=15.63;ReadPosRankSum=-0.380;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	39819802	rs28668750	G	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	39826479	rs3786949	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr19	39826597	rs251905	A	G	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=0.518;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:185,119:0.39:304
chr19	39826838	rs251906	C	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	39847854	.	G	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=1.849;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	39847856	.	G	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.650;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	39870528	rs11667792	C	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr19	39897480	rs75780595	C	T	4017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=1.153;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:216,196:0.48:412
chr19	39898667	rs3746083	C	T	8514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.414;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:571,448:0.44:1019
chr19	39905662	rs114725664	G	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:186,125:0.40:311
chr19	39912037	rs60249181	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	39914308	rs31725	C	T	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:145,133:0.48:278
chr19	39914748	rs31726	G	A	5622.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:273,283:0.51:556
chr19	39915637	rs31727	G	A	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr19	39915758	rs31728	C	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:205,185:0.47:390
chr19	39915958	rs56845315	A	G	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:164,168:0.51:332
chr19	39916110	rs16746	GGGA	G	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	39923952	rs17627	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	39924129	rs566130	T	C	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:194,182:0.48:376
chr19	39926509	rs17628	A	C	4702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.297;QD=10.76;ReadPosRankSum=1.083;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:200,237:0.54:437
chr19	39926521	rs17626	G	A	4180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.267;QD=11.24;ReadPosRankSum=0.531;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:166,206:0.55:372
chr19	39932066	rs1865091	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	39936502	rs1932	G	A	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:194,192:0.50:386
chr19	39936693	rs2116932	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	39944082	rs1130180	C	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.714;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	39944189	rs57355849	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr19	39948871	rs374640896	CCCACCA	C,CCCA	12297.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=395;set=Intersection	GT:AF:DP	1/2:0.10,0.90:328
chr19	39949437	rs60889515	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr19	39949764	rs1529733	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:62,84:0.58:146
chr19	39963828	rs45568533	T	A	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:175,201:0.53:376
chr19	39971622	rs2304221	C	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=0.489;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	39972766	rs62120691	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:95,90:0.49:185
chr19	39976464	rs4803245	C	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:103,125:0.55:228
chr19	39976734	rs4803247	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	39977173	rs8112528	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr19	39978610	rs74178079	GTGTA	G	1423.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr19	39991072	rs371078896	CA	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=2.324;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	39994711	rs1110627	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr19	40007067	.	GTC	G	23	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.4999;HP=3;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=23;QD=31.0;SC=CTGGCCCCTTGTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=7;TCF=2;TCR=5;TR=1;WE=40007076;WS=40007057;set=Platypus	GT:AD:AF:DP	1/0:6,1:0.14:7
chr19	40009373	rs75317096	C	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,85:0.48:176
chr19	40023308	rs1123301	A	G	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.456;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:194,125:0.39:319
chr19	40093111	rs3764843	C	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr19	40096127	rs2233709	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-0.335;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr19	40149297	rs1860134	T	A	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	40172924	rs10415800	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr19	40174119	rs1126159	C	T	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr19	40174236	rs7258833	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:209,162:0.44:371
chr19	40174305	rs57205516	C	T	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.648;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:96,65:0.40:161
chr19	40197924	rs4830	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr19	40199914	rs10755	C	G	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-2.274;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:94,74:0.44:168
chr19	40224833	rs375867	A	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	40224869	rs391646	T	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr19	40224887	rs391660	T	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr19	40224901	rs453827	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr19	40224986	rs384138	A	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:116,137:0.54:253
chr19	40225168	rs399641	T	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr19	40225646	rs17608	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:121,73:0.38:194
chr19	40225783	rs10402365	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	40228522	rs28439433	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr19	40267088	rs73930620	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.825;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	40267103	rs59802166	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.651;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	40267136	rs150451439	C	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.441;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	40267138	rs149580606	T	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.359;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	40267141	rs113789073	G	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.251;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	40267338	rs61276555	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	40318086	rs12977762	A	G	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:234,219:0.48:453
chr19	40328615	rs616650	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr19	40354067	rs2405	T	C	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.158;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:66,51:0.44:117
chr19	40354576	rs2302523	C	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr19	40357247	rs887806	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.563;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	40357341	rs4436880	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:107,58:0.35:165
chr19	40357360	rs2075097	C	G	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:130,76:0.37:206
chr19	40357683	rs759120	T	G	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:103,95:0.48:198
chr19	40362573	rs10422312	A	G	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	40362902	rs55722236	G	A	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:230,223:0.49:453
chr19	40366362	rs3855679	G	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	40366374	rs2053089	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr19	40366433	rs79287624	C	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr19	40366676	rs142109751	TCACCTC	T	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	40367862	rs6508920	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	40368274	.	C	A	3149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=21.425;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=-7.062;QD=28.38;ReadPosRankSum=2.676;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:34,77:0.69:111
chr19	40368280	rs62106924	A	G	3443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=13.112;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-8.470;QD=24.25;ReadPosRankSum=3.023;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:48,94:0.66:142
chr19	40368395	rs28472548	C	T	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr19	40368498	rs12610683	AA	CC	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	40373869	.	T	C	682.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	40373889	.	CCA	TTG	1224.77	.	AC=1;AF=0.500;AN=2;DP=88;JOINED;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr19	40373973	rs78698767	G	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=0.785;QD=2.78;ReadPosRankSum=1.384;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:231,67:0.22:298
chr19	40374034	rs138587194	A	G	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.63;QD=26.84;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	40374061	.	T	C	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.446;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=6.371;MLEAC=1;MLEAF=0.500;MQ=45.47;MQRankSum=-0.906;QD=6.01;ReadPosRankSum=0.053;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:77,23:0.23:100
chr19	40374072	rs147259660	G	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.038;MLEAC=1;MLEAF=0.500;MQ=44.71;MQRankSum=-0.071;QD=7.12;ReadPosRankSum=0.160;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr19	40376261	.	A	G	69	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=40.29;NF=5;NR=1;PP=69;QD=17.2952020912;SC=GGGCTGATGAACAGTGGGAGG;SbPval=0.83;Source=Platypus;TC=19;TCF=14;TCR=5;TR=6;WE=40376269;WS=40376251;set=Platypus	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	40376675	rs77872255	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-3.720;QD=1.57;ReadPosRankSum=1.014;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:225,52:0.19:277
chr19	40382178	rs76154158	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	40382200	rs56009346	G	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-0.073;QD=11.35;ReadPosRankSum=-0.912;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	40382310	.	G	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-3.274;QD=1.13;ReadPosRankSum=0.465;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr19	40384082	.	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-1.589;QD=0.80;ReadPosRankSum=-0.085;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr19	40384161	rs139184925	G	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-3.406;QD=4.67;ReadPosRankSum=-1.444;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:114,52:0.31:166
chr19	40384445	.	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=53.04;MQRankSum=0.089;QD=2.73;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	40384518	rs149161739	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.99;MQRankSum=-0.489;QD=11.72;ReadPosRankSum=-0.489;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	40384605	rs143306165	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=37.95;MQRankSum=-0.674;QD=9.44;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	40389581	.	G	T	184	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=26;MQ=43.9;NF=12;NR=3;PP=184;QD=14.5847475031;SC=TACACTACCCGCAGCCCCAGA;SbPval=0.6;Source=Platypus;TC=54;TCF=43;TCR=11;TR=15;WE=40389589;WS=40389571;set=Platypus	GT:AD:AF:DP	0/1:39,15:0.28:54
chr19	40389741	rs141158749	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-0.443;QD=4.95;ReadPosRankSum=0.012;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr19	40391933	rs139958212	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	40392359	rs56242719	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.07;QD=25.32;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	40392482	rs62108883	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.05;QD=26.35;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	40392588	rs62108885	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:57,16:0.22:73
chr19	40392608	rs144926504	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr19	40392631	rs80068592	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=2.278;QD=2.02;ReadPosRankSum=-0.644;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr19	40392680	.	C	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.70;MQRankSum=0.513;QD=6.17;ReadPosRankSum=-0.803;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	40405886	rs12978320	G	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-2.985;QD=3.03;ReadPosRankSum=1.707;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr19	40405899	rs7507507	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-3.820;QD=1.59;ReadPosRankSum=1.047;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:22,3:0.12:25
chr19	40407901	rs3901397	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	40408821	rs11083543	C	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,106:0.45:236
chr19	40408857	rs4802064	T	C	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:158,113:0.42:271
chr19	40408887	rs187481174	G	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:133,89:0.40:222
chr19	40420217	rs139379906	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr19	40424615	.	G	GTC	581.50	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	40430271	rs75882088	A	G	4488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=-1.242;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:135,117:0.46:252
chr19	40430277	rs77083491	C	T	4780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-1.818;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:144,133:0.48:277
chr19	40478605	.	C	CAT	90.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	40486136	rs234341	G	A	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:92,101:0.52:193
chr19	40486171	rs234342	C	T	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:106,124:0.54:230
chr19	40486786	rs11377144	G	GT	132.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	40512212	rs71902864	TCC	T	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	40512217	.	A	G	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	40512218	.	G	A	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr19	40537801	rs234359	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	40580426	rs399405	A	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:121,110:0.48:231
chr19	40581677	rs337795	G	A	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:111,106:0.49:217
chr19	40711333	rs892117	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-1.264;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr19	40719076	rs1129156	T	C	9965.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	40719410	rs3746006	C	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:138,109:0.44:247
chr19	40720079	rs3746005	C	T	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	40721877	rs8106744	G	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	40723747	rs73933218	C	G	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	40723844	rs79666308	C	T	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=2.005;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:59,93:0.61:152
chr19	40739513	rs33933140	A	G	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.224;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:115,68:0.37:183
chr19	40739602	.	G	GGCAGGGGCT	1855.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr19	40739721	rs2304186	G	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr19	40742320	rs2304189	T	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	40746326	rs143744952	G	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	40770982	rs3730050	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	40788641	rs11880261	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	40839664	rs8103796	A	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	40873489	.	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.807;QD=0.56;ReadPosRankSum=-0.281;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr19	40875800	rs3745198	C	G	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=-0.448;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	40875810	rs3745199	C	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=-0.767;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr19	40884160	rs4635	G	A	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:209,184:0.47:393
chr19	40886866	rs55869814	G	A	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:132,116:0.47:248
chr19	40889684	.	C	CCTT	8385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.204;QD=17.29;ReadPosRankSum=0.733;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:265,220:0.45:485
chr19	40900179	rs142743305	TTCCTCC	T	2118.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:129,106:0.45:235
chr19	40900865	rs268674	C	T	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	40901604	rs268672	A	G	3302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=-1.130;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:75,88:0.54:163
chr19	40901614	rs268671	A	G	3234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.582;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:74,86:0.54:160
chr19	40928944	rs4150992	A	G	3030.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:135,149:0.52:284
chr19	40929363	rs268687	T	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr19	40929553	rs268686	G	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr19	40947305	rs7259644	A	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	40947373	rs10560834	GGATC	G	1244.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	40957441	rs373095840	CTT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.538;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	40978640	rs73931308	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr19	41008049	rs814526	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr19	41018832	rs814533	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.735;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	41018911	rs112677742	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.390;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	41021089	rs34104750	GAGA	G	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	41025243	rs814538	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr19	41034912	rs1461008	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr19	41038574	rs814501	G	A	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr19	41040334	rs1165858	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr19	41062902	rs34510741	AC	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.559;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr19	41072890	rs1165835	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-2.371;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	41075662	rs1165837	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr19	41077891	rs8101070	C	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=1.065;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr19	41078220	rs1165841	G	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr19	41082868	rs16974365	T	C	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.448;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:61,64:0.51:125
chr19	41082993	rs35684786	GC	G,GCCC	426.84	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	0/1:0.66:29
chr19	41083444	rs2290682	C	T	7000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=878;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.198;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:490,375:0.43:865
chr19	41083854	rs61373446	TACAC	T	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=40.41;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	41084471	rs3217684	A	AG	522.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr19	41095086	.	TGAGGACAGTCCTGTCCAACAGGGAGG	T	4803.73	.	AC=2;AF=1.00;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	41096189	rs396118	A	G	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	41104977	rs55815263	C	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.943;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr19	41106184	rs79102501	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	41111069	rs2303729	G	A	9903.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	41114065	rs2303728	G	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:90,98:0.52:188
chr19	41116397	rs1318544	G	A	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	41117624	rs2278246	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	41117869	rs1131620	A	G	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	41118056	rs1051303	A	G	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	41119273	rs12611045	G	C	11771.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	41120083	rs2369006	A	T	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	41122671	rs10403963	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	41123093	rs59030801	A	AG	5680.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	41125159	rs7259237	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	41125177	rs7259554	G	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	41128162	rs12979249	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=0.674;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	41128309	rs10880	C	T	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	41129079	rs11376199	C	CT,CTT	696.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.326;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.306;SOR=0.430;set=HC	GT:AD:AF:DP	1/2:14,29,17:0.48,0.28:60
chr19	41129842	rs7367	C	T	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	41131675	rs2278242	C	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41132022	rs2278243	C	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	41133844	rs41512448	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	41135156	rs35487927	TCA	T	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr19	41135475	rs1051481	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr19	41173880	rs2604901	C	T	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:111,104:0.48:215
chr19	41173892	rs141662737	CTGCTGT	C	2624.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:124,74:0.37:198
chr19	41179596	rs73931344	G	A	123.90	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	41192610	rs112258640	T	TTGAG	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	41192617	rs59449188	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	41201778	rs145108055	CTATTATT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.140;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.561;QD=9.62;ReadPosRankSum=-1.192;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	41201860	rs75686781	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr19	41211056	rs3865452	T	C	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	41251180	rs2369302	T	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	41255500	rs2254343	C	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	41257176	rs1457141	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	41265201	rs736625	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	41269076	rs2305797	T	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr19	41270866	rs10412175	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:125,103:0.45:228
chr19	41283365	rs2233159	C	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	41286163	rs2287691	C	G	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr19	41306362	rs11547373	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.31;ReadPosRankSum=0.524;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	41313202	rs3736329	C	A	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:196,200:0.51:396
chr19	41316349	.	A	G	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.964;QD=20.85;ReadPosRankSum=0.336;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:48,64:0.57:112
chr19	41316355	rs41530251	T	C	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-2.052;QD=22.43;ReadPosRankSum=0.795;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr19	41316370	rs11552615	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr19	41324832	rs2545773	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.18;QD=26.22;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	41332171	rs78011401	C	T	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:117,93:0.44:210
chr19	41349640	rs7248240	G	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	41350664	rs1809810	A	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	41354606	rs4986892	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-8.768;QD=0.46;ReadPosRankSum=4.511;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:190,29:0.13:219
chr19	41354661	rs79584535	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-7.447;QD=1.92;ReadPosRankSum=-0.146;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr19	41354688	rs148803816	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.990;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-6.279;QD=1.42;ReadPosRankSum=-3.286;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:44,6:0.12:50
chr19	41354689	rs201873185	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-6.151;QD=1.46;ReadPosRankSum=-2.767;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr19	41354712	rs8192725	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	41355849	rs2302990	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-9.077;QD=1.00;ReadPosRankSum=3.690;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:232,46:0.17:278
chr19	41355896	rs376970015	T	C	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-14.297;QD=2.01;ReadPosRankSum=-7.146;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:166,43:0.21:209
chr19	41356281	rs1137115	T	C	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	41381647	rs12460590	A	C	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	41382607	rs2316206	AG	CA	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=44.05;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	41382612	rs2316208	CG	TA	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.72;QD=45.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	41382645	rs3865455	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.89;QD=43.59;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	41382653	rs2388869	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.36;QD=43.66;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	41382655	rs2316210	T	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.80;QD=48.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	41382665	rs3852869	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.62;QD=48.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	41383153	rs2261144	A	G	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	41383344	rs2302988	T	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	41383378	rs16958956	C	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	41383799	rs3869579	G	A	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	41384637	rs4079367	C	T	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.26;QD=25.57;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	41384675	rs4079366	T	C	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	41386136	rs4142867	A	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	41386282	rs3815705	G	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.576;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=0.025;QD=8.77;ReadPosRankSum=-1.539;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	41386420	rs56081734	A	C	10059.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.92;QD=26.27;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	41386486	rs3815708	CA	AG	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.34;QD=44.37;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	41386494	rs3815710	A	C	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.26;QD=46.48;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	41386527	rs58798281	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	41386544	rs71337574	C	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.39;QD=42.99;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41386547	rs74219554	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.67;QD=44.43;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	41387620	rs10425150	A	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.75;QD=27.28;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	41387647	rs10425169	A	G	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.26;QD=44.51;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	41387656	rs10425176	A	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.43;QD=44.20;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	41387669	rs10425185	A	G	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41397370	rs3852870	A	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	41397806	rs8106551	C	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	41400906	rs10626476	C	CAGAG	2312.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	41400913	rs140473451	AAAAC	A	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr19	41401950	rs4803398	G	C	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41402162	rs3956342	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	41402579	rs6508953	A	G	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	41403129	rs10574908	CA	C	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.799;QD=10.55;ReadPosRankSum=-0.154;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr19	41403325	rs7252852	T	C	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	41403982	rs11083583	G	GT	3436.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	41404196	rs10419393	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr19	41405962	rs4803400	T	G	11022.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:2,435:1.00:437
chr19	41414363	rs8100418	A	T	11365.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr19	41414481	rs72480748	G	A	13073.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr19	41415112	rs3844442	T	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	41416750	rs10419589	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	41416831	rs146260021	A	AT	109.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	41442597	rs73038469	G	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	41447479	rs34151237	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.79;QD=39.25;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	41447486	rs34013487	C	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.83;QD=41.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	41447492	rs73038475	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.95;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	41447928	rs3865460	G	A	10020.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	41512841	rs3745274	G	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	41515702	rs2279345	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	41518773	rs8192719	C	T	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:178,98:0.36:276
chr19	41531487	rs11670798	A	G	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr19	41531522	rs11670865	G	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:68,98:0.59:166
chr19	41531656	rs7249735	A	C	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=7.03;ReadPosRankSum=1.187;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:74,50:0.40:124
chr19	41531705	rs3745275	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr19	41531825	rs3745276	A	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=0.180;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr19	41531859	rs7254767	C	G	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.114;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:62,56:0.47:118
chr19	41531915	rs3745277	G	A	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.636;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:115,103:0.47:218
chr19	41532126	rs7255146	C	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	41532141	rs71742418	CTCAG	C	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	41557908	rs149277105	A	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=48.77;MQRankSum=1.604;QD=12.51;ReadPosRankSum=1.209;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	41564293	rs116772961	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr19	41564399	rs75901609	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	41595901	.	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=8.674;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-3.744;QD=6.49;ReadPosRankSum=1.548;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	41595905	rs113406157	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-4.136;QD=4.99;ReadPosRankSum=1.841;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	41595906	.	C	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-4.136;QD=4.99;ReadPosRankSum=1.847;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	41699301	rs181317441	C	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr19	41700343	rs338600	C	T	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.35;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	41700343	.	CGTA	TGTA,TGTG	713	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=25;MQ=59.89;NF=61,30;NR=35,15;PP=713,646;QD=7.78928346403;SC=TGGTAGAGGGCGTAGAAGCTA;SbPval=0.61;Source=Platypus;TC=98;TCF=61;TCR=37;TR=96,45;WE=41700354;WS=41700333;set=Platypus	GT:AF:DP	0/1:0.98:98
chr19	41700346	rs117216419	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.322;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:93,75:0.45:168
chr19	41700493	rs338599	G	C	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr19	41703503	rs338595	G	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.65;ReadPosRankSum=-0.524;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	41703604	.	C	CA	42	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=11;HapScore=3;MGOF=16;MMLQ=16;MQ=60.35;NF=2;NR=3;PP=42;QD=10.2;SC=GATTCCGTCTCAAAAAAAAAA;SbPval=0.75;Source=Platypus;TC=11;TCF=5;TCR=6;TR=5;WE=41703612;WS=41703594;set=Platypus	GT:AD:AF:DP	1/0:6,5:0.45:11
chr19	41703660	rs338594	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.949;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	41704304	rs338593	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr19	41704832	rs338592	A	G	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	41707094	rs1628289	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	41711755	rs338586	G	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.208;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	41711815	rs338585	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr19	41712113	rs338584	C	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	41712424	rs338583	A	G	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:130,145:0.53:275
chr19	41725410	rs73550504	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr19	41725530	rs149399883	GAC	G	656.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr19	41737017	rs79266409	G	A	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:101,123:0.55:224
chr19	41743861	rs7249222	A	G	16822.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr19	41744101	rs75837457	G	T	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr19	41745281	rs113821295	C	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	41745540	rs80091624	G	A	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:195,178:0.48:373
chr19	41748753	rs2304234	T	C	4762.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:195,236:0.55:431
chr19	41759631	rs372123509	ACC	A	1126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.742;QD=19.10;ReadPosRankSum=-0.364;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr19	41763631	rs77400888	A	G	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr19	41765575	rs61737386	C	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:221,217:0.50:438
chr19	41798468	.	GAC	G	28	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.4999;HP=2;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=28;QD=16.5;SC=AGACAGAGGAGACACACACAC;SbPval=0.21;Source=Platypus;TC=9;TCF=1;TCR=8;TR=2;WE=41798477;WS=41798458;set=Platypus	GT:AD:AF:DP	0/1:7,2:0.22:9
chr19	41811730	rs12745	T	C	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	41825369	rs10407138	C	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	41838206	rs8179181	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	41854385	rs11466324	C	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	41854480	rs60262005	TTTTA	T	128.74	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr19	41858921	rs1800470	G	A	1019.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr19	41858963	rs9282871	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	41863777	rs11668109	A	C	2318.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=0.322;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr19	41863994	rs73931466	A	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr19	41869392	rs2241714	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	41869468	rs2241713	G	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr19	41869487	rs3217387	C	CA	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr19	41884174	rs76144272	C	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:191,141:0.42:332
chr19	41889423	rs11880674	A	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.637;QD=9.26;ReadPosRankSum=-1.628;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	41889425	rs371273511	TA	T	1509.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.725;QD=24.75;ReadPosRankSum=1.436;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:19,42:0.69:61
chr19	41889427	rs373093385	TTA	T	564.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.851;QD=9.41;ReadPosRankSum=0.362;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr19	41889429	rs7259900	A	T	564.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.637;QD=9.26;ReadPosRankSum=-1.239;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	41889748	rs12602	T	C	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	41897674	rs878082	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	41897688	rs878083	G	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	41903220	rs10853751	G	A	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr19	41903671	rs892044	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	41903675	rs892043	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	41919944	rs3213861	A	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	41920211	rs3213860	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	41928070	rs114716391	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr19	41928336	rs284651	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	41928652	rs284652	C	T	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	41928701	rs284653	C	T	5670.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:139,151:0.52:290
chr19	41928724	rs284654	G	A	6097.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:166,177:0.52:343
chr19	41928765	rs284655	C	T	12896.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:2,497:1.00:499
chr19	41928867	rs3217385	G	GC	18191.73	.	AC=2;AF=1.00;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=33.32;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,546:1.00:546
chr19	41928897	rs74586298	G	A	3852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.360;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:219,204:0.48:423
chr19	41930277	rs78812877	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr19	41930396	rs4674	A	G	21495.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr19	41930435	rs34492894	C	T	7142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.719;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:424,365:0.46:789
chr19	41931454	rs113478859	A	AGGCCAGGGCCGG	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	41932084	rs284660	G	T	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:171,197:0.54:368
chr19	41932120	rs284661	C	T	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:217,192:0.47:409
chr19	41932275	rs284662	T	C	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	41932612	rs284663	C	T	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	41932758	rs45623740	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	41938208	rs2231944	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:126,102:0.45:228
chr19	41938394	.	CGT	C	61	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=24;MQ=59.81;NF=0;NR=5;PP=61;QD=14.4;SC=ACAGCGTGTGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=25;TCF=1;TCR=24;TR=5;WE=41938403;WS=41938384;set=Platypus	GT:AD:AF:DP	1/0:20,5:0.20:25
chr19	41939297	rs1043413	C	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chr19	41945848	rs13344547	G	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:99,58:0.37:157
chr19	41945904	rs13344563	G	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr19	41949870	rs3745286	T	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	42027500	rs4803475	A	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	42027514	rs4803476	T	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	42027612	rs11882458	A	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:94,65:0.41:159
chr19	42083535	rs75057543	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	42083673	rs7247842	T	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr19	42083849	rs714106	C	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr19	42085873	rs2302188	A	G	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	42090676	rs115885052	A	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,67:0.46:147
chr19	42091909	rs66781883	CT	C	2498.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:137,85:0.38:222
chr19	42092815	rs3745936	T	A	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	42125660	rs1041994	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	42132193	rs3848568	T	C	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:151,156:0.51:307
chr19	42188032	rs34670266	GC	G	1514.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr19	42190859	rs8102488	A	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:77,70:0.48:147
chr19	42219023	rs138694037	G	A	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:184,117:0.39:301
chr19	42219306	rs62117363	C	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr19	42221607	rs7249230	A	G	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:133,171:0.56:304
chr19	42260697	rs61736638	G	A	3517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.707;QD=8.88;ReadPosRankSum=1.147;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:217,179:0.45:396
chr19	42265866	rs28547939	C	G	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:82,87:0.51:169
chr19	42265889	rs11548735	G	T	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:109,111:0.50:220
chr19	42266085	rs7246255	A	G	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=2.136;QD=7.29;ReadPosRankSum=1.779;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:194,145:0.43:339
chr19	42311060	rs5828129	A	AAAG	851.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	42313803	rs3795022	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	42313921	rs734107	G	T	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:141,147:0.51:288
chr19	42315281	rs899662	G	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr19	42315300	rs2008808	G	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.475;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr19	42342319	rs2290695	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	42342822	rs7252877	T	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=0.792;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	42342832	.	C	CAT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	42342923	rs10414356	T	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr19	42343155	rs4130852	G	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr19	42343526	rs3922888	G	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr19	42354629	rs2305809	T	C	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:132,172:0.57:304
chr19	42373298	rs1366610	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	42373679	rs2075750	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	42373893	rs2075751	C	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr19	42375244	rs2075754	C	T	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.037;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr19	42463447	rs735571	C	T	4642.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:218,234:0.52:452
chr19	42471050	rs919390	G	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	42471550	rs115062483	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr19	42489516	rs2217342	A	C	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	42603776	rs1205817	A	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr19	42736267	rs851609	A	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	42753160	rs76105803	A	G	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:100,94:0.48:194
chr19	42793590	rs3826706	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	42799049	rs1052023	C	T	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:188,168:0.47:356
chr19	42847993	rs115574025	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	42848764	rs874002	A	G	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	42865283	rs73033437	G	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr19	42914609	rs34044249	G	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:150,130:0.46:280
chr19	42927521	rs10422283	T	C	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr19	42927712	rs35838874	G	A	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.811;QD=17.24;ReadPosRankSum=-0.292;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr19	42927716	rs35409716	C	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.938;QD=17.46;ReadPosRankSum=0.824;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr19	42927731	rs35913880	AG	A	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr19	42930652	rs3745238	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr19	42930773	rs16975748	A	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:108,65:0.38:173
chr19	42931004	rs16975750	A	G	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:85,106:0.55:191
chr19	42933186	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.583;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	42947097	rs28514561	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr19	43009563	rs16975862	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=2.028;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr19	43013394	rs10405906	A	G	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,98:0.58:168
chr19	43015836	rs10401178	G	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.327;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr19	43021011	rs10412463	G	C	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr19	43031248	rs8111468	T	G	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:108,112:0.51:220
chr19	43031369	rs8110904	G	A	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:181,202:0.53:383
chr19	43031514	rs8111171	G	T	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:179,174:0.49:353
chr19	43032561	rs8102519	G	A	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:145,149:0.51:294
chr19	43032624	rs8103285	T	C	2116.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,111:0.48:233
chr19	43087428	rs8103051	A	C	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:110,116:0.51:226
chr19	43092775	rs10406307	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr19	43093718	rs10413332	C	T	4496.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:204,218:0.52:422
chr19	43098931	rs28367882	C	A	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:156,96:0.38:252
chr19	43226149	rs145251164	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:84,61:0.42:145
chr19	43244485	rs11880551	G	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr19	43244636	rs145236949	G	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr19	43268069	rs7255164	A	G	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:244,167:0.41:411
chr19	43268140	rs11355507	AG	A	4185.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:192,140:0.42:332
chr19	43268216	rs7256456	T	G	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:159,122:0.43:281
chr19	43269699	rs7260508	C	T	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=44.53;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	43269704	rs62112127	TG	CA	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=45.31;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	43348803	rs111325358	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	43376259	rs112875190	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr19	43406575	rs112816284	C	T	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.771;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:113,100:0.47:213
chr19	43439793	rs7245978	G	A	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	43519362	rs11083680	C	T	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr19	43519442	rs10414166	T	C	2611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-1.538;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:128,132:0.51:260
chr19	43530379	rs2526716	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr19	43530390	rs2736151	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr19	43530640	rs60941975	GT	G	2028.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	43690506	rs8107936	G	C	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr19	43690667	rs12610783	CT	TC	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-3.046;QD=13.69;ReadPosRankSum=0.306;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr19	43690678	rs12610809	G	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-3.239;QD=14.82;ReadPosRankSum=-0.603;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	43690700	rs12609374	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	43708853	rs4802164	A	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	43772270	rs3746296	G	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr19	43857873	rs45441892	G	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr19	43858066	rs45571738	G	A	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:111,110:0.50:221
chr19	43859549	rs1962260	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	43860053	rs71350665	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-1.882;QD=11.60;ReadPosRankSum=-1.655;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	43860076	rs71350666	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.64;MQRankSum=2.429;QD=10.07;ReadPosRankSum=-1.335;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	43860192	rs71337594	T	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.46;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	43860251	rs199668750	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	43860255	rs200662237	T	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	43864548	rs10425835	C	A	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr19	43865499	rs71339512	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.74;QD=24.97;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	43865840	rs28464741	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-1.402;QD=10.05;ReadPosRankSum=1.073;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chr19	43866449	rs78718189	G	A	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:218,201:0.48:419
chr19	43866617	rs36081957	C	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr19	43876891	rs7246785	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:147,122:0.45:269
chr19	43876913	rs9304628	G	A	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,108:0.51:213
chr19	43876979	rs71774559	GC	G	3137.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:116,82:0.41:198
chr19	43876983	rs114301694	C	T	3562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=1.433;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:121,86:0.42:207
chr19	43876991	rs10404818	T	G	3912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.009;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:136,100:0.42:236
chr19	43876994	rs10404822	T	G	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=1.284;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:141,102:0.42:243
chr19	43877001	rs10403027	A	G	4150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.340;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:148,118:0.44:266
chr19	43877394	rs3745996	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-0.133;QD=7.43;ReadPosRankSum=0.956;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr19	43883124	rs4803622	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr19	43883313	rs4803623	C	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.30;QD=26.37;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	43883362	rs58082187	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQRankSum=-2.924;QD=2.52;ReadPosRankSum=-1.610;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr19	43883396	rs138640583	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.33;MQRankSum=-2.621;QD=2.08;ReadPosRankSum=-1.784;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr19	43883434	rs57359219	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-1.412;QD=2.70;ReadPosRankSum=-0.804;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr19	43883441	rs57148209	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.803;QD=1.93;ReadPosRankSum=1.476;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:43,6:0.12:49
chr19	43910649	rs11673673	G	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr19	43910764	rs8113556	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	43910835	rs73937417	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=0.180;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	43920443	rs3810375	C	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	43922061	rs3816438	A	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:63,41:0.39:104
chr19	43922300	rs2278834	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr19	43965804	rs28477226	G	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:86,92:0.52:178
chr19	43967485	rs192050400	G	A	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:284,338:0.54:622
chr19	43967563	rs141878534	G	T	8224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.172;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:402,411:0.51:813
chr19	43969757	rs2259013	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	43979589	rs1055099	G	T	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr19	43982364	rs73937429	A	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-1.233;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	43982467	rs2682543	A	G	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	43983740	rs1133929	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	43999061	rs146048489	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	43999256	.	A	G	238	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=114;MMLQ=26;MQ=53.18;NF=11;NR=5;PP=238;QD=17.0482007842;SC=TGGACTCCTGAGTCTGAGGGA;SbPval=0.92;Source=Platypus;TC=41;TCF=21;TCR=20;TR=16;WE=43999264;WS=43999250;set=Platypus	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	43999271	.	G	GA	2510	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=1;MGOF=62;MMLQ=27;MQ=53.55;NF=10;NR=17;PP=2510;QD=20;SC=GAGGGAGGAGGGGCTGGGGCC;SbPval=0.55;Source=Platypus;TC=30;TCF=11;TCR=19;TR=27;WE=43999300;WS=43999261;set=Platypus	GT:AD:AF:DP	1/0:3,27:0.90:30
chr19	43999292	.	G	GGTCTGAGGGAGGAGGAGACTCGGGGCAGGACCCCTGA	2421.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.14;QD=73.39;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	43999307	.	G	GA	1574	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=1;MGOF=75;MMLQ=27;MQ=54.81;NF=5;NR=10;PP=1574;QD=106.733333333;SC=GAGGGAGGAGGGGCTAGGGCC;SbPval=0.7;Source=Platypus;TC=32;TCF=12;TCR=20;TR=15;WE=43999336;WS=43999297;set=Platypus	GT:AD:AF:DP	1/0:17,15:0.47:32
chr19	43999634	rs1125030	A	C	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr19	44001590	rs191130230	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.361;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	44001891	rs2682549	T	C	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	44005876	rs112058634	CCAAA	C	4967.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:132,130:0.50:262
chr19	44012005	rs2599452	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	44012880	rs2682578	A	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	44031155	rs187613661	C	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:115,119:0.51:234
chr19	44031324	rs3810381	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr19	44047550	rs3547	T	C	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	44047826	rs2682557	T	A	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	44049861	rs25478	G	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr19	44050195	rs25479	C	T	1924.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,103:0.45:230
chr19	44055582	rs2139720	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr19	44055726	rs25487	T	C	8438.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	44055898	rs25486	C	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	44057227	rs915927	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	44057574	rs1799782	G	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr19	44079687	rs3213245	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr19	44081288	rs2682585	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr19	44081499	rs2682586	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.515;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	44082945	rs304731	T	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr19	44096714	rs75735430	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr19	44098903	rs304726	T	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	44098963	rs304725	C	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	44111524	.	T	TACACAC	816.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr19	44111563	rs2005852	G	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr19	44111568	.	TACAC	T,TAC	4653.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=189;set=Intersection	GT:AF:DP	1/2:0.13,0.84:159
chr19	44111754	rs758871	G	A	7207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.150;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:360,360:0.50:720
chr19	44116609	rs201742640	C	A	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:159,128:0.45:287
chr19	44116616	.	AGGGGCACACACAGCC	A	4011.73	.	AC=1;AF=0.500;AN=2;DP=272;set=Intersection	GT:AD:AF:DP	0/1:157,111:0.41:268
chr19	44117620	.	CAGCCGATCTAGAAGTCCCAACAAGGCAAGAGATCAT	C	4131.73	.	AC=1;AF=0.500;AN=2;DP=308;set=Intersection	GT:AD:AF:DP	0/1:148,114:0.44:262
chr19	44117841	rs144221927	G	T	7487.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:443,378:0.46:821
chr19	44118680	rs1860149	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=11.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=1.040;SOR=1.405;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	44128437	rs2240633	A	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,71:0.44:160
chr19	44131297	rs407049	T	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	44153003	rs4251923	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	44156472	rs2302524	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:77,92:0.54:169
chr19	44156600	rs2302525	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr19	44159819	rs4251883	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	44224161	rs346048	T	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.561;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	44237708	rs112295295	G	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	44241587	rs113389210	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr19	44241909	rs112044855	C	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr19	44244423	rs430066	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	44248878	rs346532	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	44254972	rs164070	C	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	44268540	.	TTATTATTATTATTACTAC	T	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.105;QD=16.83;ReadPosRankSum=0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	44268654	rs12609587	T	C	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.241;QD=25.65;ReadPosRankSum=-1.098;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr19	44268678	rs12611034	C	T	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.767;QD=25.09;ReadPosRankSum=0.471;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr19	44268730	rs145810077	TGTC	T	922.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr19	44273516	rs347519	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	44276370	rs3760979	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr19	44278779	rs649540	T	G	4275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=1.505;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:94,114:0.55:208
chr19	44278779	.	TAG	GAA	2031	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=22;MQ=60.0;NF=28;NR=33;PP=2031;QD=34.1716045059;SC=CAGCTGCCGGTAGGGGGCCAA;SbPval=0.55;Source=Platypus;TC=100;TCF=46;TCR=54;TR=61;WE=44278789;WS=44278769;set=Platypus	GT:AD:AF:DP	1/0:39,61:0.61:100
chr19	44278781	rs563995	G	A	4275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.59;ReadPosRankSum=2.938;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:94,104:0.53:198
chr19	44280837	rs514328	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	44280869	rs373080093	AT	A	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.155;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	44280886	rs116344022	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.155;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	44280886	.	CC	TG	173	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=27;MQ=60.0;NF=2;NR=3;PP=173;QD=45.2935749724;SC=TTTTTTGATTCCCAATTTTCC;SbPval=0.6;Source=Platypus;TC=19;TCF=7;TCR=12;TR=5;WE=44280895;WS=44280876;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	44280887	rs115618336	C	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.133;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	44280980	rs35773079	T	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=0.404;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	44302624	rs349053	T	C	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:197,166:0.46:363
chr19	44303066	rs11547806	C	G	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.823;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:47,47:0.50:94
chr19	44335579	rs149909778	CGTTT	C	1702.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr19	44339546	rs11673454	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr19	44351107	rs10421861	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	44351166	rs79626467	GGGAGAT	G	696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.853;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr19	44351694	rs2195980	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	44351836	rs957569	G	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	44352665	rs2356437	T	C	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.49;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	44352666	rs1061769	G	A	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.161;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:55,62:0.53:117
chr19	44352688	rs2883946	G	A	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.471;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:49,51:0.51:100
chr19	44376681	rs1050054	G	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr19	44377048	rs76550420	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	44377357	rs239942	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	44377669	rs12977303	G	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr19	44377991	rs78841585	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-1.442;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr19	44378009	rs74424854	A	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.356;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	44378063	rs79324499	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr19	44378178	rs77779894	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr19	44378224	rs77337446	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=1.402;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	44384292	rs16976863	A	C	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:107,101:0.49:208
chr19	44417575	rs417699	A	G	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:122,105:0.46:227
chr19	44418077	rs407731	C	T	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:107,118:0.52:225
chr19	44418343	rs406968	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr19	44418544	rs425221	A	G	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:117,130:0.53:247
chr19	44418680	rs388685	G	C	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:133,107:0.45:240
chr19	44418693	rs388706	T	C	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:141,118:0.46:259
chr19	44418824	rs399098	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:79,76:0.49:155
chr19	44419030	rs420242	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	44422982	rs423320	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr19	44423195	rs423752	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	44423981	rs384329	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.098;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr19	44426265	rs413093	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	44426467	rs57712519	T	TG	243.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	44466754	rs413061	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr19	44469577	rs451601	T	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	44470189	rs454301	T	A	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	44470420	rs439676	T	C	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	44470548	rs453640	A	G	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	44470663	rs435590	G	C	12434.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr19	44471209	rs365745	T	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr19	44471252	rs61734609	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:113,105:0.48:218
chr19	44471323	rs366111	G	A	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:100,134:0.57:234
chr19	44471632	rs56887248	CT	C	194.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.280;SOR=0.058;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr19	44492487	rs391267	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,13:0.23:57
chr19	44492568	rs414402	A	G	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:155,116:0.43:271
chr19	44494156	rs382255	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.855;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	44494215	rs381983	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr19	44494333	rs381628	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr19	44494351	rs396786	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	44494374	rs148741128	AGAGT	A	505.75	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,13:0.93:14
chr19	44496070	rs431509	A	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:91,92:0.50:183
chr19	44500478	rs398235	A	T	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-1.887;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:80,59:0.42:139
chr19	44500603	rs62640890	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr19	44500761	rs448921	G	A	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:208,187:0.47:395
chr19	44501116	rs388812	A	G	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:127,117:0.48:244
chr19	44501227	rs388471	A	G	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:107,133:0.55:240
chr19	44501627	rs35292176	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	44503311	rs59647509	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.41;ReadPosRankSum=0.849;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	44503379	rs452554	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	44503541	rs11314755	TA	T	1238.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.41;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	44503569	rs7252394	G	A	531.74	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr19	44503607	rs7253205	T	C	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	44511202	rs2356549	A	T	3778.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-0.421;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:2,147:0.99:149
chr19	44511223	rs424147	T	G	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.65;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	44511389	rs2191566	G	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	44512865	rs11880006	C	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-1.522;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	44513173	rs76081769	A	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr19	44530390	rs8101750	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	44530444	rs3830527	GAC	G	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	44531702	rs73556203	A	G	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:206,219:0.52:425
chr19	44535999	rs7258517	G	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,95:0.56:170
chr19	44537375	rs140288723	AGTTT	A	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	44564401	rs12610472	T	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	44564981	rs3826941	G	A	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	44565125	rs4502339	A	G	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	44570393	rs6509138	C	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr19	44570551	rs4375771	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	44570951	rs61729338	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:155,120:0.44:275
chr19	44571154	rs4433920	T	C	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:86,115:0.57:201
chr19	44580440	rs201907991	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.415;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr19	44580758	rs57895932	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	44585159	rs4803674	T	A	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,116:0.50:234
chr19	44586076	rs4553729	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	44589999	rs139900131	TCTC	T	4587.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:105,118:0.53:223
chr19	44590558	rs7255701	C	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,64:0.47:137
chr19	44591360	rs8113249	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	44601023	rs73558293	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	44601917	rs10401658	C	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr19	44604914	rs62115526	T	C	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr19	44610665	rs2068061	A	G	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	44610798	rs4239529	A	T	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	44610843	rs72480796	C	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:77,82:0.52:159
chr19	44611066	rs7508149	T	C	11257.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr19	44611420	rs4508518	A	G	11227.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr19	44612005	rs3746321	A	G	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.74;ReadPosRankSum=-0.209;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:60,58:0.49:118
chr19	44612014	rs3200505	A	T	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=0.155;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:58,54:0.48:112
chr19	44612231	rs3746319	A	G	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,68:0.63:108
chr19	44634903	rs10413195	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	44652748	rs3817595	C	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.010;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr19	44652954	rs2293587	G	A	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:128,120:0.48:248
chr19	44660967	rs12609635	A	G	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	44662274	rs35483237	T	TA	227.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=13.40;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	44663805	rs62117771	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	44676148	rs2232801	G	C	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:60,83:0.58:143
chr19	44678906	rs7260367	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	44680489	rs2178342	G	A	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:104,98:0.49:202
chr19	44680514	rs61742486	G	A	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:102,104:0.50:206
chr19	44721699	rs9304640	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:130,109:0.46:239
chr19	44722059	rs7254458	A	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr19	44732658	rs922063	C	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr19	44732835	rs922064	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr19	44739031	rs73553206	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr19	44739399	rs2279072	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:75,60:0.44:135
chr19	44740602	rs3810137	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr19	44754426	rs116986038	G	A	472.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=0.437;QD=10.99;ReadPosRankSum=0.747;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	44754427	rs117515605	A	T	472.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=0.437;QD=10.99;ReadPosRankSum=0.747;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr19	44764064	rs1233444	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:122,58:0.32:180
chr19	44778405	rs1233428	A	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr19	44778795	rs59660444	CG	C	1362.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:65,38:0.37:103
chr19	44778797	rs2884015	T	A	1371.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr19	44792969	rs2609908	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr19	44871173	rs2722747	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr19	44871287	rs8113807	T	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=0.051;QD=8.58;ReadPosRankSum=-1.106;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:81,68:0.46:149
chr19	44871293	rs2571074	T	C	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.66;QD=33.27;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	44871374	rs16978991	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	44890697	rs1836280	A	G	4655.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:32,209:0.87:241
chr19	44890801	rs12610859	T	C	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	44890817	rs73039937	G	A	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:117,98:0.46:215
chr19	44890841	rs59953894	G	A	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:112,109:0.49:221
chr19	44891554	rs61358479	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,41:0.40:103
chr19	44891784	rs2571089	T	C	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	44892206	rs73557001	C	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-15.922;QD=1.27;ReadPosRankSum=0.978;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:273,59:0.18:332
chr19	44892225	rs114985922	T	G	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-16.256;QD=4.69;ReadPosRankSum=-1.206;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:280,60:0.18:340
chr19	44892228	rs117953191	G	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-16.048;QD=4.64;ReadPosRankSum=-1.901;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:276,58:0.17:334
chr19	44892333	rs2571090	A	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	44896487	rs2571123	G	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr19	44896857	rs2571122	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	44898662	rs2571124	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-1.383;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr19	44901526	rs2722650	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	44901557	rs2722651	A	G	232.96	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr19	44932368	rs56749977	C	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	44933504	rs59505617	G	A	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:125,148:0.54:273
chr19	44933706	rs57014690	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:178,160:0.47:338
chr19	44934489	rs2571174	G	A	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	44934653	rs8113370	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr19	44946630	.	C	T	106.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.16;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	44947050	rs204548	T	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.685;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:99,79:0.44:178
chr19	44947184	rs204547	T	C	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	44976058	rs2571053	C	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr19	44977071	rs1897824	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:77,101:0.57:178
chr19	44977240	rs1897823	A	G	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:91,121:0.57:212
chr19	44977262	rs17714261	T	C	4578.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:107,125:0.54:232
chr19	44977382	rs1897822	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:95,47:0.33:142
chr19	44977405	rs1897821	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr19	44977417	rs55771561	A	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr19	44981375	rs954314	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr19	44981883	rs1897820	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr19	44983567	rs2253563	C	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr19	44983728	rs35167767	TG	T	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	45001232	rs2571109	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr19	45001346	rs2571108	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr19	45004042	rs12459496	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	45004305	rs12977470	G	C	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:265,209:0.44:474
chr19	45015596	rs1004605	T	G	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr19	45016116	rs8100718	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr19	45016990	rs5828200	CT	C	5733.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	45017477	rs10706694	TA	T	2675.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	45017486	rs4802229	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.922;QD=7.88;ReadPosRankSum=0.138;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr19	45021210	rs10414398	G	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:180,115:0.39:295
chr19	45024875	rs12975863	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	45024879	rs57244256	CGT	C	425.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	45028112	rs35443082	T	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,68:0.50:137
chr19	45029208	rs10408247	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr19	45033342	.	AT	A	584	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=9;HapScore=1;MGOF=61;MMLQ=21;MQ=60.08;NF=29;NR=25;PP=584;QD=11.1296296296;SC=CTGTGTCTCTATTTTTTTTCT;SbPval=0.46;Source=Platypus;TC=64;TCF=36;TCR=28;TR=54;WE=45033350;WS=45033332;set=Platypus	GT:AD:AF:DP	1/0:10,54:0.84:64
chr19	45033379	rs146778060	GCACACACA	G,GCACACA	3307.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.626;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.295;QD=26.89;ReadPosRankSum=-1.786;SOR=0.407;set=HC	GT:AD:AF:DP	1/2:6,66,51:0.54,0.41:123
chr19	45033485	rs62116895	A	G	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:152,173:0.53:325
chr19	45116776	rs846898	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	45117163	rs111463774	C	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:34,70:0.67:104
chr19	45121424	rs10412507	G	A	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	45126900	rs846856	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	45126994	rs846857	A	G	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	45138669	rs60475615	TC	T	574.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=1.572;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr19	45138671	rs370451038	TCTC	T	290.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=1.202;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	45147340	rs11540084	G	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr19	45147518	rs5828211	C	CA	13618.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=40.06;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr19	45147542	rs439446	T	C	12573.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	45147576	rs5828212	CG	C	5671.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.66;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	45150763	rs10421291	G	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:138,144:0.51:282
chr19	45157060	rs10406264	G	T	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:191,210:0.52:401
chr19	45157113	rs71171278	A	AG	12108.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	45161070	rs35365841	G	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,112:0.42:266
chr19	45162038	rs203710	A	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	45164661	rs28613807	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr19	45176340	rs2965157	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	45203837	rs2919848	G	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	45204623	rs189900455	C	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:97,69:0.42:166
chr19	45206532	rs2965167	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	45206695	rs894189	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr19	45207028	rs59111781	CT	C	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.803;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.482;QD=7.57;ReadPosRankSum=0.927;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr19	45251156	rs2965169	A	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	45251505	rs2927459	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr19	45260214	rs2927456	G	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr19	45262578	rs6146536	C	CCAGACCCCCAGCCCCTCCTCCCT	1409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.442;QD=18.80;ReadPosRankSum=1.660;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr19	45281590	.	TGCTCCCA	T	478.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	45293097	rs115235350	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	45293156	rs114294368	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr19	45296832	rs61750955	A	G	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:102,83:0.45:185
chr19	45296846	rs66944506	A	AC	2825.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:93,76:0.45:169
chr19	45296942	.	C	CCTGGACTCCTGGGTCTGAGGGAGGAAGGGCTGGGGT	693.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.790;QD=15.77;ReadPosRankSum=0.547;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr19	45297450	rs34259391	T	TC	2189.73	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:208,112:0.35:320
chr19	45297454	rs1903831	A	C	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:207,117:0.36:324
chr19	45322744	rs1135062	A	G	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:377,255:0.40:632
chr19	45375522	rs73936965	T	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	45385759	rs3745150	G	C	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	45389224	rs283814	A	G	14551.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr19	45404431	rs741780	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr19	45404691	rs405697	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	45409167	rs440446	C	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	45430280	rs5112	C	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	45451620	rs5120	T	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr19	45451656	rs10422603	T	G	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr19	45452335	rs4803776	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr19	45458146	rs3760629	A	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	45465363	rs35566032	GA	G	1417.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr19	45476422	rs204481	T	C	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	45477910	rs11318909	CT	C	2093.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	45488434	rs204472	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	45488567	rs204471	T	C	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	45489548	rs58800134	A	AG	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	45490636	rs204468	T	C	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	45493635	rs875255	C	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr19	45494247	rs11405080	A	AC	9780.73	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	45494349	rs11333249	TC	T	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	45496303	rs9193	T	C	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:110,73:0.40:183
chr19	45506772	rs7251460	T	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	45513146	rs150557566	GGCCTTC	G	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr19	45515057	rs62117215	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=0.949;QD=6.42;ReadPosRankSum=3.023;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	45515059	rs62117216	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=0.949;QD=6.42;ReadPosRankSum=3.051;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	45515061	rs62117217	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=1.226;QD=9.61;ReadPosRankSum=3.353;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	45515063	rs62117218	A	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=1.111;QD=14.72;ReadPosRankSum=3.782;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	45515065	rs62117219	A	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=1.270;QD=24.67;ReadPosRankSum=3.195;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	45515067	rs62117220	A	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=1.270;QD=24.67;ReadPosRankSum=3.195;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	45515069	rs62117221	A	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=1.270;QD=24.67;ReadPosRankSum=3.195;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	45536036	rs10424046	C	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr19	45537417	rs143167603	AAAAT	A	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	45540541	.	G	GA	27	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5141;HP=16;HapScore=2;MGOF=63;MMLQ=27;MQ=58.4;NF=2;NR=0;PP=27;QD=15.0;SC=CTCCATCTCAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=8;TCR=1;TR=2;WE=45540549;WS=45540531;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr19	45541076	rs190138155	G	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	45556257	rs73941105	C	T	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr19	45556449	rs73941106	G	T	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:130,156:0.55:286
chr19	45561032	rs7259931	C	A	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr19	45561063	rs4803794	A	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	45571579	rs59705171	AC	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.071;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	45571781	rs10445571	T	C	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	45571900	rs34337168	G	GCC	721.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr19	45571903	rs36097205	G	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr19	45573621	rs73560284	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	45596533	rs114578504	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	45596886	rs75350052	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr19	45643352	rs28404390	T	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:89,115:0.56:204
chr19	45643371	rs28706378	C	A	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.808;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:144,165:0.53:309
chr19	45643890	rs2041262	T	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr19	45643954	rs2041263	G	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	45645435	rs35904300	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:70,73:0.51:143
chr19	45647032	rs73562286	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr19	45648503	rs10419874	A	G	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.433;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:117,97:0.45:214
chr19	45649386	rs968445	A	G	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:110,113:0.51:223
chr19	45649503	rs112250728	T	TGTAA	1809.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr19	45655658	rs880751	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:65,87:0.57:152
chr19	45659277	rs184148878	C	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	45681560	rs7254936	T	C	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	45682824	rs758506	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr19	45716678	rs346740	G	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:92,66:0.42:158
chr19	45721596	rs3826909	G	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr19	45728223	rs147432288	C	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:107,105:0.50:212
chr19	45728272	rs138255702	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr19	45730804	rs79690275	T	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	45767870	rs345423	G	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr19	45781081	.	TTG	T	33	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.4999;HP=2;HapScore=3;MGOF=7;MMLQ=19;MQ=57.06;NF=0;NR=1;PP=33;QD=36.0;SC=GGGACAAAGGTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=1;WE=45781092;WS=45781077;set=Platypus	GT:AD:AF:DP	1/0:5,1:0.17:6
chr19	45801018	rs173179	T	C	10433.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr19	45801223	rs79214602	C	A	3900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.246;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:246,203:0.45:449
chr19	45810035	rs4884	A	G	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:206,183:0.47:389
chr19	45814947	rs17875617	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	45815248	rs10402747	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr19	45818628	rs377993	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	45818835	rs1133190	A	G	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.326;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:119,100:0.46:219
chr19	45849920	rs200641209	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr19	45850598	rs11418793	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.610;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	45852954	.	T	TGGGGTG	175	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=12;HapScore=3;MGOF=15;MMLQ=26;MQ=61.26;NF=1;NR=4;PP=175;QD=37.8;SC=AACGTGAGGGTGGGGGGGGGC;SbPval=0.38;Source=Platypus;TC=11;TCF=1;TCR=10;TR=5;WE=45852962;WS=45852944;set=Platypus	GT:AD:AF:DP	0/1:6,5:0.45:11
chr19	45854503	rs143201119	CCCTCA	C	4684.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:130,123:0.49:253
chr19	45854919	rs13181	T	G	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:189,131:0.41:320
chr19	45856468	rs238417	G	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,77:0.49:156
chr19	45859072	rs35665496	CT	C	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=1.775;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr19	45862302	.	C	A	740.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr19	45865002	rs171140	C	A	11336.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	45865217	rs238403	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	45867259	rs1799793	C	T	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	45868006	rs238405	A	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr19	45868038	rs1799786	G	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	45868309	rs238406	T	G	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	45868478	rs238407	T	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	45872036	rs1799783	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	45873942	rs3810366	G	C	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	45901152	.	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.987;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	45909920	rs186441932	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	45910441	rs142616668	C	T	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:245,254:0.51:499
chr19	45911319	rs11314106	CA	C	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-0.866;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr19	45911330	rs2013521	T	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.947;QD=10.56;ReadPosRankSum=2.096;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:48,45:0.48:93
chr19	45911436	rs150994935	G	A	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:183,166:0.48:349
chr19	45911748	rs143757857	G	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:94,77:0.45:171
chr19	45912002	rs735482	A	C	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:118,91:0.44:209
chr19	45912257	rs146750944	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,76:0.51:149
chr19	45912343	rs762562	A	G	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr19	45912406	rs2336219	G	A	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:123,110:0.47:233
chr19	45912489	rs35729377	CAAG	C	4713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.063;QD=17.99;ReadPosRankSum=-0.219;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:138,124:0.47:262
chr19	45912736	rs3212986	C	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr19	45913086	rs3212985	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.712;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr19	45913093	rs1007616	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=1.085;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr19	45916985	rs144868115	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr19	45918849	rs10401261	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.84;QD=25.95;SOR=4.664;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	45920264	rs3212967	G	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	45922323	rs3212961	G	T	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:164,175:0.52:339
chr19	45923496	rs3212955	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	45923653	rs11615	A	G	10312.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=2.168;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:2,407:1.00:409
chr19	45924362	rs3212948	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	45971961	rs2282695	C	G	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	45972039	rs2282696	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	45974593	rs2276469	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	45991975	.	AG	A	4917.73	.	AC=1;AF=0.500;AN=2;DP=370;set=Intersection	GT:AD:AF:DP	0/1:192,166:0.46:358
chr19	45998346	rs2298887	C	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	46002766	rs45440199	G	T	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	46003399	rs147723657	C	CT,CTT	540.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.408;QD=21.63;ReadPosRankSum=0.499;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:1,9,15:0.36,0.60:25
chr19	46003601	rs2156916	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	46025692	.	G	A	663.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr19	46027681	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.928;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr19	46027752	rs4802260	C	T	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	46027793	rs112195619	C	A	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:230,165:0.42:395
chr19	46056775	rs140105522	T	C	2777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-2.067;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:146,137:0.48:283
chr19	46057081	rs3826860	A	G	3841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.594;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:216,200:0.48:416
chr19	46087828	rs116426072	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr19	46088108	rs73570932	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	46118127	rs3816046	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	46119867	rs2241722	C	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr19	46121020	rs12985660	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	46125006	rs60420267	A	G	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.418;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:48,60:0.56:108
chr19	46127918	rs28365786	A	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.223;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:43,32:0.43:75
chr19	46130191	rs1548026	T	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	46133251	rs7251952	C	T	4026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=-0.572;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:151,110:0.42:261
chr19	46133256	rs7252175	G	A	3964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.144;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:143,105:0.42:248
chr19	46141845	rs12151009	T	C	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:124,123:0.50:247
chr19	46144814	rs28602630	G	A	3213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.686;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:173,163:0.49:336
chr19	46145025	rs2286756	G	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr19	46148159	rs73570973	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	46148386	rs11670462	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.264;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	46180150	rs4803846	A	G	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	46185217	rs12709891	C	A	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr19	46191828	rs10403723	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:106,107:0.50:213
chr19	46192367	rs55742289	T	TC	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,72:0.40:179
chr19	46192403	rs28396273	T	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:129,98:0.43:227
chr19	46195051	rs61466254	G	GC	7247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=2.250;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:317,322:0.50:639
chr19	46196634	rs2302593	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	46204938	rs4803847	C	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	46205050	rs4803848	T	C	11918.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	46206098	rs62111730	G	A	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,93:0.44:211
chr19	46206262	rs17850756	G	A	8302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-2.162;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:447,426:0.49:873
chr19	46214684	rs34505186	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=12.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.407;SOR=2.192;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr19	46238555	rs2041975	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.391;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	46248407	rs10404220	G	A	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.590;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:63,54:0.46:117
chr19	46258024	rs918164	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	46260375	rs4802275	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr19	46262286	rs725660	C	A	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:246,189:0.43:435
chr19	46264963	rs12982642	C	T	6615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.473;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:349,337:0.49:686
chr19	46265047	rs139434566	A	ATCCAGC	2245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=6.171;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.934;QD=19.70;ReadPosRankSum=-1.579;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:57,57:0.50:114
chr19	46268902	rs2341097	C	T	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:147,168:0.53:315
chr19	46269076	rs2014576	G	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr19	46269313	rs2014377	G	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr19	46274171	rs635299	A	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	46274972	rs915915	A	C	2939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.249;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:152,144:0.49:296
chr19	46276056	rs16939	C	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr19	46281745	rs1799894	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,68:0.43:159
chr19	46282890	rs2070737	A	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	46285362	rs149612963	G	GC	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr19	46287200	rs617988	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	46288706	rs3760843	A	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	46289392	rs8110017	G	C	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	46289503	rs8109951	C	T	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:124,105:0.46:229
chr19	46313758	rs10402263	G	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr19	46313825	rs10407137	A	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	46318963	rs3810331	C	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	46320041	rs74821481	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr19	46326200	rs12976060	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	46327166	rs11671524	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr19	46327185	rs7252416	G	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	46327209	rs11284049	CT	C	599.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	46329438	rs7246155	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	46329781	rs28362500	GT	G	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	46331302	rs4239535	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	46332194	rs3745929	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	46332369	rs141706016	C	T	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:143,174:0.55:317
chr19	46333632	rs4516331	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	46334955	rs4803866	C	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr19	46338492	rs7256192	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr19	46366279	rs34086257	C	G	3540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.642;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:207,189:0.48:396
chr19	46367901	rs1363538	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	46387344	rs11550348	G	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr19	46387503	rs3745926	T	C	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:199,139:0.41:338
chr19	46394322	rs114387602	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr19	46404579	rs10423899	A	G	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	46417429	rs66529687	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	46443739	rs28742045	T	G	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.026;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:77,74:0.49:151
chr19	46464225	rs35514609	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-2.388;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	46506433	rs149310015	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	46506781	rs10412427	T	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-1.945;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	46506786	rs71337252	TG	T	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	46506809	rs10416563	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.188;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	46511548	rs2287305	T	C	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr19	46511617	rs9676886	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr19	46520026	rs2287306	A	G	7071.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.378;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=1.232;SOR=0.503;set=HC	GT:AD:AF:DP	1/1:1,282:1.00:283
chr19	46520227	rs111751953	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr19	46520728	rs11669048	G	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	46522877	rs146282647	A	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:100,128:0.56:228
chr19	46526004	rs28722714	G	A	4682.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:181,231:0.56:412
chr19	46526298	rs2072562	T	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	46543067	rs147910516	C	CACA	1282.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr19	46543212	rs28396657	T	C	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.210;QD=11.88;ReadPosRankSum=-0.404;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:52,73:0.58:125
chr19	46543249	rs756401	TG	CA	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.177;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=-0.888;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:27,39:0.59:66
chr19	46543252	.	C	T	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=-1.191;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr19	46543671	rs10412490	A	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr19	46544248	rs56734695	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr19	46544311	rs10518266	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr19	46640551	rs1990765	C	A	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:159,165:0.51:324
chr19	46640564	rs10402339	T	C	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:173,182:0.51:355
chr19	46663530	rs10402662	T	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr19	46664168	rs2270403	G	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr19	46664400	rs10408162	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr19	46664542	rs10408440	A	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.241;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	46808371	rs4802306	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:65,75:0.54:140
chr19	46811388	rs7251867	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	46811984	rs2311054	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr19	46812126	rs757638	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr19	46812451	rs61750957	C	T	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:308,232:0.43:540
chr19	46815297	rs8101216	T	C	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:165,165:0.50:330
chr19	46815499	rs8101480	T	C	17396.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr19	46815703	rs66668057	ATATT	A	11308.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=2.951;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:358,299:0.46:657
chr19	46815705	rs3752207	A	C	7303.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-3.225;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:299,354:0.54:653
chr19	46815711	rs116478928	C	T	11349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=3.378;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:364,303:0.45:667
chr19	46815969	.	GGT	G	438.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr19	46815993	rs73940660	T	C	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	46823702	rs3764609	A	G	3349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.031;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:225,181:0.45:406
chr19	46823751	rs3764610	C	T	3520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-0.993;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:225,183:0.45:408
chr19	46857257	rs41275764	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr19	46857286	rs2075144	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	46878989	rs4239538	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr19	46887007	rs1024781	G	C	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	46887199	rs4803937	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr19	46892111	rs759290	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr19	46892168	rs8106745	T	C	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	46893238	rs759291	A	C	14402.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=2.063;SOR=0.423;set=HC	GT:AD:AF:DP	1/1:3,568:0.99:571
chr19	46893465	rs2311213	A	G	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	46914921	rs34186470	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:132,127:0.49:259
chr19	46971773	rs45575940	T	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr19	46974003	rs7248888	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr19	46974307	rs3826852	C	T	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	46996186	rs11882222	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.363;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr19	46996933	rs149291954	G	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-2.373;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:62,44:0.42:106
chr19	47030234	rs62136886	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	47030432	rs3745795	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr19	47104310	rs17551870	TGG	T	464.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	47105585	rs35630463	A	AT	953.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr19	47109011	rs3729510	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	47111663	rs3729760	T	C	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	47112648	rs10113	T	C	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:264,257:0.49:521
chr19	47112740	rs710889	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr19	47124714	rs2229129	T	G	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.790;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:100,120:0.55:220
chr19	47126614	rs12459883	C	G	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.787;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:58,54:0.48:112
chr19	47127324	rs2229128	C	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr19	47137802	rs1874722	C	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr19	47138042	rs968394	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr19	47151994	rs184698514	G	A	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.164;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:115,146:0.56:261
chr19	47153145	rs375074031	CA	C	616.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.783;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:4,40:0.91:44
chr19	47177913	rs314665	A	G	16408.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr19	47193850	rs314671	T	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	47200618	rs10413222	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	47207964	rs73058662	T	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr19	47212593	rs10423365	A	G	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.911;QD=10.60;ReadPosRankSum=-0.783;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:65,76:0.54:141
chr19	47228985	rs313844	G	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	47228990	rs3848529	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=2.277;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr19	47230627	rs7351078	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr19	47236268	rs11666600	G	C	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:205,173:0.46:378
chr19	47239919	rs2270685	G	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr19	47241560	.	GGAATCCAGAATCCCAAACCCCAA	G	1172.73	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr19	47241659	rs12976352	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.633;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr19	47249296	rs12984041	G	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	47258899	rs111754012	C	T	3546.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:206,181:0.47:387
chr19	47259886	rs145894568	A	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr19	47278859	rs3027961	C	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:152,106:0.41:258
chr19	47278938	rs1060043	G	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:103,115:0.53:218
chr19	47280689	rs3027960	G	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr19	47280789	rs313835	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	47282162	rs2070246	G	A	5374.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:270,274:0.50:544
chr19	47282240	rs3745609	A	G	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	47287169	rs313852	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	47287925	rs16980723	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr19	47287939	rs313853	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr19	47290651	rs3826793	G	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:72,76:0.51:148
chr19	47342867	rs312185	A	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr19	47524151	.	GCCC	G	640.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.12;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:5,17:0.77:22
chr19	47543774	rs3745615	G	A	6996.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	47548327	rs10423289	A	C,T	1064.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.455;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=0.638;SOR=1.293;set=HC	GT:AD:AF:DP	1/2:1,34,18:0.64,0.34:53
chr19	47548678	rs889169	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr19	47549155	rs889170	AT	GC	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;JOINED;set=Intersection	GT:AD:AF:DP	0/1:124,88:0.42:212
chr19	47549454	rs11083857	C	T	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	47549791	rs1862499	A	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr19	47549962	rs73566538	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr19	47585517	rs7250850	G	C	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.513;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:99,93:0.48:192
chr19	47585698	rs7251104	G	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr19	47587772	rs2303107	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:86,91:0.51:177
chr19	47588202	rs7248181	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr19	47597102	rs10408163	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	47634313	rs177918	T	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	47761543	rs2302985	T	C	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-2.154;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:37,30:0.45:67
chr19	47761646	rs12985905	G	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:96,74:0.44:170
chr19	47764072	rs34398252	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr19	47768128	rs2032811	G	C	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,55:0.48:115
chr19	47774706	rs35119724	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,77:0.50:154
chr19	47778054	rs34227852	G	GC	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.92;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	47778101	rs35912982	T	TC	1052.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	47778221	rs10407367	A	C	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=15.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.162;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr19	47813165	rs11670330	G	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:101,104:0.51:205
chr19	47823038	rs4467185	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	47823484	rs4804049	T	C	9723.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr19	47823871	rs11880097	G	T	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr19	47861401	rs58465170	G	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr19	47878858	rs61751860	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr19	47879093	rs8105743	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	47879548	rs61440989	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	47879613	rs2253022	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	47879874	rs10419083	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.78;ReadPosRankSum=-1.210;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	47883086	rs28522883	T	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:96,113:0.54:209
chr19	47885180	rs889167	A	G	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr19	47916598	rs11673488	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.970;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	47916654	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-1.549;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	47933190	rs142312177	A	AG	1865.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	47933257	rs73940834	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr19	47933728	rs8104926	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr19	47935352	rs4801722	T	C	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	47944710	rs2254560	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	47980153	rs2293424	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr19	48043460	.	C	T	536.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	48043699	.	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=8.921;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=-0.000;QD=2.52;ReadPosRankSum=-1.451;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	48044243	rs2974239	A	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.939;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:46,38:0.45:84
chr19	48044281	rs2974240	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.420;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	48182522	rs56106931	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr19	48182568	rs2911005	C	T	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:136,118:0.46:254
chr19	48182787	rs4802382	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr19	48182859	rs60219834	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr19	48182946	rs2911006	T	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=1.343;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:65,58:0.47:123
chr19	48183114	rs2914438	A	G	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:107,72:0.40:179
chr19	48183771	rs1035938	C	T	8046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=941;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.761;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:510,418:0.45:928
chr19	48184474	rs3745762	C	T	3891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-2.155;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:226,203:0.47:429
chr19	48184642	rs58014830	TG	T	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	48197218	rs2914428	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	48198817	rs2241612	T	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.977;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr19	48202125	rs7248050	C	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,69:0.46:149
chr19	48205725	rs3745760	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.570;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	48229169	rs8111184	A	G	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:234,235:0.50:469
chr19	48239557	rs11669035	T	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	48244045	rs34197064	C	CT	1784.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	48244194	rs7255434	A	G	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	48244569	rs3745758	G	A	10691.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	48244692	rs3833256	C	CG	1983.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	48248834	rs10404034	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.081;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	48248907	rs78530808	G	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	48249117	rs6146540	CGTCGGGG	C	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=35.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	48250320	rs2334293	G	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	48250414	rs3745756	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	48253389	rs56293449	A	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	48253579	rs3745754	A	G	9436.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:5,413:0.99:418
chr19	48253667	rs3786780	C	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,47:0.57:83
chr19	48254392	rs10402957	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=24.36;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	48254799	rs11538669	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr19	48255804	rs1042558	A	G	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:133,127:0.49:260
chr19	48258551	rs10406879	T	C	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	48258578	rs10405135	A	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	48258717	rs1804994	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	48258772	rs11083895	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	48258826	rs10411523	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	48259200	rs55813323	A	G	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.316;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:53,37:0.41:90
chr19	48259787	rs11538664	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	48260079	rs889142	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	48282077	rs111841672	C	CGCAGCGG	3939.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:90,109:0.55:199
chr19	48282172	rs1862485	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	48284025	rs34362700	C	CG	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr19	48305530	.	C	CGGGCCTGAGATT	1444	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=1;MGOF=24;MMLQ=24;MQ=59.99;NF=3;NR=12;PP=1444;QD=102.933333333;SC=GGCCTGGGTTCGGGCCTGAGA;SbPval=0.65;Source=Platypus;TC=60;TCF=13;TCR=47;TR=15;WE=48305546;WS=48305520;set=Platypus	GT:AD:AF:DP	1/0:45,15:0.25:60
chr19	48305542	.	TGGGCCTGGGATCGGGCCTGGGTTC	T	1820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=4.116;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=4.301;QD=12.56;ReadPosRankSum=-3.638;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:93,52:0.36:145
chr19	48305651	rs62130758	G	A	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,71:0.44:161
chr19	48305654	rs73036913	C	T	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr19	48306962	.	C	T	104.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.96;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	48337812	rs62128766	C	T	6419.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	48337897	rs62128767	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.689;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	48389425	rs11083907	A	G	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.891;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:123,116:0.49:239
chr19	48484256	rs76319792	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	48495128	rs11671612	T	C	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.825;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr19	48511854	rs12977319	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	48511888	rs16982100	T	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	48512010	rs34842242	G	A	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr19	48517341	rs62129077	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:118,104:0.47:222
chr19	48517538	rs62129078	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,56:0.49:115
chr19	48519158	rs34129198	C	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr19	48519205	rs34647554	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	48519241	rs3745751	C	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr19	48519244	rs35792818	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr19	48522869	rs3815908	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	48522882	rs10422382	A	C	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	48525507	rs2303690	G	A	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.307;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:52,62:0.54:114
chr19	48525555	rs6509358	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr19	48543774	rs8102084	C	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	48543862	rs8105198	G	A	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	48544753	rs3745745	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	48547347	rs35637404	C	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	48551546	rs9226	A	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.618;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	48558003	rs744399	A	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	48558159	rs2307280	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.470;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr19	48558342	rs3217328	TCTCCAGAAGACCC	T	143.94	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	48565468	rs4802425	G	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:85,78:0.48:163
chr19	48581253	rs1019785	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	48598823	rs156631	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,48:0.41:117
chr19	48598916	rs156632	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	48622318	.	C	A	447.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	48646993	rs415465	C	T	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr19	48692832	rs10418095	C	A	510.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=0.958;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr19	48693928	rs57930203	C	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	48697808	rs34897645	TGG	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	48697961	rs12973411	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	48707401	rs3745717	G	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	48707583	rs1965758	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr19	48707602	rs115132442	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr19	48707665	rs2015209	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	48707714	rs2015211	A	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	48715269	rs2008521	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	48727164	rs115051221	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.939;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:47,61:0.56:108
chr19	48727209	rs115223532	C	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr19	48733756	rs73573000	G	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr19	48733863	rs59334088	A	G	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:224,177:0.44:401
chr19	48734007	rs58650907	C	G	3699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.852;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:187,186:0.50:373
chr19	48734018	rs2304134	G	A	3457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.464;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:176,170:0.49:346
chr19	48734195	rs59878320	T	G	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:203,182:0.47:385
chr19	48734942	rs11881179	T	C	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,85:0.52:162
chr19	48735287	rs4802448	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	48736533	rs11882074	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr19	48736706	rs4802449	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr19	48737556	rs73944113	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr19	48737706	rs2043211	A	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr19	48737812	rs12461019	C	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr19	48741616	rs12460967	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr19	48741734	rs12463023	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:155,128:0.45:283
chr19	48744025	rs34345721	CA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.644;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	48744345	rs16981853	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	48788904	rs140236127	GGAAAGAAA	G	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.226;QD=14.63;ReadPosRankSum=0.576;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	48800218	rs10415825	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	48800338	rs7252988	A	G	8557.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.964;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-1.300;SOR=0.350;set=HC	GT:AD:AF:DP	1/1:4,340:0.99:344
chr19	48800725	rs73585332	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr19	48800751	rs61747754	C	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,71:0.53:133
chr19	48800791	rs2292113	A	G	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	48801032	rs113980572	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	48801047	rs73047511	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.164;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr19	48801426	rs8111947	T	C	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	48805977	rs73585360	C	T	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,111:0.47:234
chr19	48809585	rs10416590	G	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr19	48821896	rs73047547	C	A	2790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.410;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:137,139:0.50:276
chr19	48823545	rs8107712	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr19	48830286	rs10415654	T	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=2.035;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	48832554	rs8102349	A	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	48833420	.	C	CG	45	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=10;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=45;QD=22.0;SC=CGGCGCTGGGCGGGGGGGAAA;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=3;WE=48833428;WS=48833410;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	48836673	rs3826828	G	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr19	48848708	rs112116754	T	TTTAC	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	48866457	rs73049222	G	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	48866482	rs3826824	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	48876661	rs2569713	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	48886435	rs2230412	G	T	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr19	48893802	.	AAGAGAGAGAGAGAGAGAC	A	710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=3.923;QD=9.74;ReadPosRankSum=0.949;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:46,27:0.37:73
chr19	48908631	rs34833452	AG	A	5101.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	48917417	rs139367525	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr19	48922700	rs10406134	G	T	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:121,136:0.53:257
chr19	48922772	rs11302654	CT	C	579.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.141;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:8,43:0.84:51
chr19	48923101	rs276709	C	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,56:0.41:135
chr19	48924963	rs1654671	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr19	48945880	rs62130268	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	48946325	rs111420822	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	48949286	rs1643487	G	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	48949764	rs3760795	G	A	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:87,107:0.55:194
chr19	48949766	rs929743	C	G	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:105,80:0.43:185
chr19	48954571	rs1799274	A	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	48956329	rs77441781	C	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:154,140:0.48:294
chr19	48968015	rs73050908	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:96,65:0.40:161
chr19	48972740	.	T	C	45	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=20;MQ=60.0;NF=5;NR=2;PP=45;QD=11.3958875067;SC=CCGCCCCGGATTCCCCGCGGG;SbPval=0.58;Source=Platypus;TC=23;TCF=17;TCR=6;TR=7;WE=48972748;WS=48972730;set=Platypus	GT:AD:AF:DP	1/0:16,7:0.30:23
chr19	48972890	rs116172436	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr19	48975746	rs2287658	C	T	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=2.504;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:83,92:0.53:175
chr19	48975807	rs79525710	C	T	2111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.756;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:130,111:0.46:241
chr19	48976497	rs56297411	T	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.887;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr19	48977019	rs1799258	C	T	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	48977382	rs28433711	T	C	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr19	48977479	rs61748773	C	T	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:186,172:0.48:358
chr19	48977701	rs73942287	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr19	48978325	rs11083939	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr19	48979186	rs12327611	C	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	48981869	rs11882635	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr19	49079246	rs2544794	C	T	4329.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:231,219:0.49:450
chr19	49090368	rs34482710	T	TA,TAA	1006.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;QD=22.37;SOR=1.154;set=HC	GT:AD:AF:DP	1/2:0,31,14:0.69,0.31:45
chr19	49095871	rs2302949	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	49099955	rs3815691	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	49102513	rs1052131	C	T	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:123,151:0.55:274
chr19	49102782	rs10410524	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	49104466	rs73579553	C	T	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:97,116:0.54:213
chr19	49114236	rs454715	T	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	49116076	rs2617801	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	49116134	rs2617800	T	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	49116359	rs447802	T	C	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	49116438	rs376524	A	G	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:156,98:0.39:254
chr19	49116555	rs368654	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	49119900	rs138568775	C	CCAGCACAGCA	3406.73	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:266,188:0.41:454
chr19	49120252	rs11382518	T	TA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.450;QD=2.53;ReadPosRankSum=0.306;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	49122248	rs3094287	T	C	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	49123875	rs11407052	T	TA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.769;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	49131764	rs34630951	A	AAG	6634.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr19	49133761	rs2301139	C	T	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr19	49134388	rs3745734	G	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	49136651	rs12608544	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr19	49138654	.	ATT	A	5722.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.124;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=7.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.627;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:232,141:0.38:373
chr19	49138657	.	G	GAAGACCAA	5723.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.693;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=7.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=0.191;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:233,141:0.38:374
chr19	49141532	rs3848543	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	49143025	rs2303147	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	49164952	rs281392	A	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:80,62:0.44:142
chr19	49166875	rs371690	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	49167361	rs73581795	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	49168182	rs373002	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	49183284	rs3826838	G	A	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.505;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:224,195:0.47:419
chr19	49183705	rs3826846	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:131,122:0.48:253
chr19	49206108	rs679574	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	49206145	rs516316	G	C	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	49206172	rs516246	C	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	49206417	rs492602	A	G	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	49206462	rs681343	C	T	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	49206674	rs601338	G	A	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	49206985	rs602662	G	A	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	49207206	rs485186	A	G	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	49207255	rs485073	A	G	7516.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	49207255	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=1;MGOF=17;MMLQ=24;MQ=60.0;NF=35;NR=72;PP=2947;QD=20;SC=ATGCTGGCCCATTCTTTGAGA;SbPval=0.57;Source=Platypus;TC=108;TCF=36;TCR=72;TR=107;WE=49207265;WS=49207245;set=Platypus	GT:AD:AF:DP	1/1:1,107:0.99:108
chr19	49207257	rs603985	T	C	7516.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.391;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	49216926	rs281384	A	G	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	49217261	rs281385	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	49217520	rs281387	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	49217605	rs281388	T	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	49218060	rs35866622	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr19	49218111	rs33988101	G	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	49218430	rs12978750	A	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.54;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	49218437	rs12978752	A	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.38;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	49218602	rs12979278	C	T	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	49228272	rs2287921	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	49232226	rs2287922	G	A	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	49248730	rs838145	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	49254573	rs838137	T	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr19	49261368	rs739320	T	C	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:231,171:0.43:402
chr19	49391404	rs8112811	C	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr19	49399628	rs3830422	CCA	C	751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.32;ReadPosRankSum=-0.175;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	49399821	rs12461075	G	A	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.614;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr19	49400634	rs7260579	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:96,80:0.45:176
chr19	49400775	rs6509407	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	49400991	rs6650758	C	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr19	49401205	rs145391367	CTTAT	C,CTTATTTATTTAT	768.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	1/2:0.75,0.25:20
chr19	49404393	rs10416967	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr19	49407784	.	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.210;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	49409026	rs111959800	G	A	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:128,121:0.49:249
chr19	49409197	rs71903082	TCACTC	T	1378.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr19	49409221	rs113033245	TGTGCTAGGCAG	T	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	49416456	rs2387579	G	A	4724.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:237,239:0.50:476
chr19	49416554	rs5828369	CA	C	3142.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr19	49421829	rs2287834	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr19	49421903	rs2287835	A	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:158,150:0.49:308
chr19	49422218	rs13344642	G	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	49424354	rs12979307	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.231;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr19	49424381	rs12979328	C	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.122;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr19	49424925	rs11671777	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr19	49425772	rs1532704	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	49438363	rs2270941	G	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:81,65:0.45:146
chr19	49438433	rs4987162	C	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	49445774	rs10423255	C	T	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr19	49447577	rs79545002	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr19	49447713	rs3765148	G	A	2688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-1.871;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:123,133:0.52:256
chr19	49458262	rs4645881	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=1.802;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr19	49459104	rs1805419	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr19	49464971	rs704243	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	49469087	rs2230267	T	C	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	49474027	rs2270938	A	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	49484669	rs372994024	AAAAC	A	855.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr19	49485548	rs5464	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr19	49485758	rs2270937	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr19	49502525	rs3764620	G	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chr19	49513273	rs1062708	C	T	5361.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:295,278:0.49:573
chr19	49513349	rs2287760	C	G	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	49513502	rs73579786	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	49518484	rs753307	C	T	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	49518575	rs753308	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	49518951	rs148244949	TC	T	3078.73	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:179,120:0.40:299
chr19	49519058	rs749776	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	49519230	rs2013039	T	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	49519466	rs1056917	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	49519551	rs73942398	G	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.405;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	49519785	rs140502544	CT	C	392.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	49519793	rs2387588	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=40.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	49519855	rs1056914	T	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.95;QD=44.33;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	49519873	rs6521	G	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	49519997	rs4002462	A	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	49520315	rs2387589	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	49520372	rs3752210	A	T	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	49520502	rs1960072	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	49522106	rs8108340	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.81;QD=22.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	49528937	rs4802537	T	C	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:98,102:0.51:200
chr19	49528971	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.842;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=9.467;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-14.258;QD=0.92;ReadPosRankSum=-3.867;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:280,28:0.09:308
chr19	49528973	.	A	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=9.473;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-14.642;QD=0.92;ReadPosRankSum=-3.636;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:282,28:0.09:310
chr19	49529116	.	T	A	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-11.447;QD=4.06;ReadPosRankSum=-2.060;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:203,78:0.28:281
chr19	49529379	rs7255292	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	49529404	rs2387592	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	49535491	rs10413257	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	49540093	rs10853805	A	C	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	49541825	rs141621458	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	49541882	rs149139631	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:74,67:0.48:141
chr19	49542006	rs148385491	A	G	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.734;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=3.007;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-7.687;QD=3.41;ReadPosRankSum=3.140;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:209,75:0.26:284
chr19	49542070	rs73945411	G	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:267,40:0.13:307
chr19	49542274	rs141591368	C	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=0.699;QD=1.94;ReadPosRankSum=-3.385;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr19	49589966	rs73945420	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	49605530	rs10419811	A	G	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	49611529	.	GGAGCGGGGCAGT	G	3943.73	.	AC=1;AF=0.500;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	0/1:91,101:0.53:192
chr19	49621964	rs2232003	T	C	3610.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:177,178:0.50:355
chr19	49632079	rs4802565	C	A	6532.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:366,344:0.48:710
chr19	49632309	rs4802566	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr19	49632500	rs4802567	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.798;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr19	49632772	rs1559155	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr19	49636633	rs2287761	G	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=1.283;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	49637561	.	T	C	409.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	49638956	rs745124	C	G	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.266;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:147,137:0.48:284
chr19	49640002	rs2303053	G	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	49643404	rs3764624	T	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	49644593	rs7250958	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	49644840	rs112961847	C	CGTGT	3617.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	49644858	rs147872140	A	AGT	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr19	49645176	rs10417260	C	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	49645194	rs113859565	A	ATG	3084.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:20,139:0.87:159
chr19	49646006	rs4545921	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	49649051	rs3764625	T	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	49649498	rs10421292	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr19	49651790	rs4802576	G	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	49652128	rs112505587	GT	G	2592.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	49652130	rs116573491	G	A	2601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	49654421	rs2278004	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	49655174	rs1423520	A	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	49657710	rs66501117	ACAT	A	5840.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	49657889	rs147238387	T	TTCC	2404.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr19	49658209	rs3745297	A	C	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:173,144:0.45:317
chr19	49658367	rs3745298	C	T	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	49658390	rs3745299	T	C	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	49661112	rs3760663	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.562;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	49661582	rs3760664	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,65:0.41:157
chr19	49671089	.	C	T	812	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=26;MQ=58.38;NF=28;NR=24;PP=812;QD=16.2840617798;SC=CTCTGGGTCTCTGTCCCCGTC;SbPval=0.39;Source=Platypus;TC=122;TCF=71;TCR=51;TR=52;WE=49671097;WS=49671079;set=Platypus	GT:AD:AF:DP	0/1:70,52:0.43:122
chr19	49671151	.	G	A	1290	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=4;HapScore=2;MGOF=16;MMLQ=24;MQ=59.85;NF=49;NR=46;PP=1290;QD=13.9449601321;SC=CTCCCTGTGTGCCCCGCTCCC;SbPval=0.49;Source=Platypus;TC=196;TCF=104;TCR=92;TR=95;WE=49671159;WS=49671141;set=Platypus	GT:AD:AF:DP	1/0:101,95:0.48:196
chr19	49671442	rs35449031	A	AGT	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr19	49675017	rs61732831	G	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr19	49675233	rs2287923	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	49685708	rs371907605	CCCATCCATCCATCCAT	C	1980.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:94,61:0.39:155
chr19	49691822	rs909010	T	C	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr19	49692373	rs1175791	C	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr19	49693824	rs1175795	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr19	49699866	rs3745301	C	T	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:167,172:0.51:339
chr19	49703401	rs1175806	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr19	49703764	rs10403114	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr19	49705116	rs11353757	CA	C	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr19	49797887	rs3214611	TA	T	87.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	49838891	rs354020	C	A	13096.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:1,498:1.00:499
chr19	49839015	rs354021	T	C	11201.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr19	49841054	rs354026	G	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	49903008	rs8110789	G	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	49929632	.	G	C	58.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	49930295	rs73053944	C	G	7179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=2.318;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:345,362:0.51:707
chr19	49930721	rs4802605	T	C	3806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.237;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:209,190:0.48:399
chr19	49935927	rs5828394	A	AG	2500.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	49936785	rs3745308	C	G	3108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.744;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:187,165:0.47:352
chr19	49936891	.	G	C	4184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DP=491;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.698;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:260,221:0.46:481
chr19	49940131	rs3826718	G	C	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr19	49944730	rs58045148	CA	C	1678.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	49949589	rs1043263	A	T	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-1.027;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:70,47:0.40:117
chr19	49950298	rs13394	C	T	9229.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,359:0.99:361
chr19	49950356	rs12443	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	49953051	rs61447252	CTTTTT	C	429.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	49954282	rs68029391	CTT	C	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.146;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	49954356	rs6509432	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	49954803	rs2293013	C	T	15569.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	49954807	rs2293012	T	G	15659.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	49955016	rs2293011	G	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	49956460	rs11267495	GTAGCCCCACCCCATTCCCAT	G	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=10.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.459;SOR=2.639;set=HC	GT:AD:AF:DP	0/1:72,10:0.12:82
chr19	49956690	rs3760670	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr19	49962892	rs62128062	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	49963987	rs11668181	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	49964817	.	C	CTGAGGGAGGAGGGGCTGGGCCTGGACTCCTGGGTG	402.73	.	AC=2;AF=1.00;AN=2;DP=0;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=0.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr19	49964833	.	T	C	91	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=60;MMLQ=24;MQ=59.36;NF=8;NR=3;PP=91;QD=11.4337465952;SC=GAGGAGGGGCTGGGCCTGGAC;SbPval=0.71;Source=Platypus;TC=19;TCF=13;TCR=6;TR=11;WE=49964841;WS=49964823;set=Platypus	GT:AD:AF:DP	1/0:8,11:0.58:19
chr19	49964833	.	T	TGGGCCTGGACTCCTGGGTCTGAGGGAGGAGGGGCC	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.003;QD=21.45;ReadPosRankSum=-3.790;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	49964977	rs1320303	C	G	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-1.899;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:108,79:0.42:187
chr19	49966935	.	CCT	TCC	247	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=5;HapScore=1;MGOF=18;MMLQ=24;MQ=46.67;NF=6;NR=2;PP=247;QD=37.5584843578;SC=GGGCTGGGGGCCTGGACTCCT;SbPval=0.82;Source=Platypus;TC=34;TCF=22;TCR=12;TR=8;WE=49966945;WS=49966932;set=Platypus	GT:AD:AF:DP	0/1:26,8:0.24:34
chr19	49966962	.	A	G	324	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=2;MGOF=17;MMLQ=18;MQ=51.07;NF=14;NR=9;PP=324;QD=15.5987483716;SC=GAGGGAGGAGAGGCTGGGGGT;SbPval=0.59;Source=Platypus;TC=53;TCF=32;TCR=21;TR=23;WE=49966970;WS=49966952;set=Platypus	GT:AD:AF:DP	0/1:30,23:0.43:53
chr19	49967291	rs2293008	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr19	49967808	rs34601909	C	T	4119.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:176,196:0.53:372
chr19	49967981	rs11558188	T	G	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:144,122:0.46:266
chr19	49968072	rs2293010	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr19	49969085	rs10853810	C	T	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:175,130:0.43:305
chr19	49969310	rs2914668	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	49982451	rs59029009	AT	A	38.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.32;ReadPosRankSum=2.200;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	49993069	rs139354594	TCCTTGTCTCTGAGTCCTTTTGC	T	1875.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr19	50028306	rs71724821	CCTGCTG	C	1928.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:102,54:0.35:156
chr19	50093454	rs4429389	A	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	50105239	rs6509439	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.58;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	50123756	rs372317811	AG	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.412;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr19	50124663	rs73058085	G	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,62:0.48:130
chr19	50140068	rs1368464	C	T	5509.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:310,282:0.48:592
chr19	50140092	rs1865077	G	A	5188.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:274,264:0.49:538
chr19	50140209	rs1368463	C	T	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:182,200:0.52:382
chr19	50140246	rs1865076	C	A	5137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.994;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:306,269:0.47:575
chr19	50149800	rs56918620	G	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:142,105:0.43:247
chr19	50154904	rs7251334	A	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	50155353	rs3745471	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-2.631;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	50155361	rs3833232	GCCGCTC	G	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-2.111;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	50156896	rs10401743	T	C	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	50161807	rs7047	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr19	50162909	rs7251	C	G	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=3.501;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:53,58:0.52:111
chr19	50168174	rs34739574	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	50169020	rs2304204	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	50172434	rs117005178	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr19	50177171	rs3745469	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	50183980	rs1433102	T	C	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	50183980	.	TT	CC	939	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=2;MGOF=44;MMLQ=24;MQ=60.0;NF=1;NR=17;PP=939;QD=55.137104159;SC=TGCTGCGCACTTCCTAGGGTC;SbPval=0.61;Source=Platypus;TC=19;TCF=1;TCR=18;TR=18;WE=50183993;WS=50183970;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr19	50183981	rs1368462	T	C	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	50183985	rs59210247	AG	A	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	50195455	rs115751101	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	50195770	rs10423579	TT	CG	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	50204126	rs73588425	A	G	4218.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:162,213:0.57:375
chr19	50208627	rs45617640	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr19	50216118	rs56405217	T	TG	5549.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	50243171	rs79485806	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:120,121:0.50:241
chr19	50249905	rs57733064	T	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr19	50249932	.	TCTGCTTCTCCTCCGGCTC	T	1806.73	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,58:0.38:151
chr19	50250808	rs8106500	C	A	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=0.578;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr19	50250813	rs61318874	C	A	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.26;ReadPosRankSum=0.203;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:38,38:0.50:76
chr19	50250872	rs8109529	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	50265230	rs1273634	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	50266409	rs73590446	G	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:111,92:0.45:203
chr19	50304336	rs1003424	A	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr19	50304392	rs10421561	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr19	50304439	rs10421754	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	50305688	rs2159984	G	C	3984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-3.526;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:252,211:0.46:463
chr19	50308893	rs8101959	T	C	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.739;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:102,94:0.48:196
chr19	50309090	rs147094146	G	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:173,113:0.40:286
chr19	50310466	rs12610577	G	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr19	50311801	rs201750052	A	ACCCCTG	2794.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,71:0.50:141
chr19	50312397	rs138966096	A	AG	1914.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr19	50312875	rs2305920	G	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.764;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:59,43:0.42:102
chr19	50314458	rs55810357	GA	G	512.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.558;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.464;QD=13.86;ReadPosRankSum=-0.497;SOR=0.162;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr19	50315423	rs8104825	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-1.606;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	50315616	rs200217210	T	TCC	2115.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr19	50315698	rs2305919	A	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	50315773	rs2305918	T	A	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr19	50316083	rs35816883	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr19	50322278	rs116134211	G	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr19	50322482	rs74863643	C	G	3511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.105;QD=8.36;ReadPosRankSum=1.051;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:230,190:0.45:420
chr19	50322611	.	T	TGATGGCTTGGGTGGTTGGGGTCCCTGTAAGGGGCCGTGCATGAGG	3311.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.104;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.267;QD=35.23;ReadPosRankSum=0.384;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:4,90:0.96:94
chr19	50322619	.	TG	T	2963	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=1;MGOF=15;MMLQ=27;MQ=59.92;NF=0;NR=42;PP=2963;QD=20;SC=AGTGATGGCTTGGGGTGGTTG;SbPval=1.0;Source=Platypus;TC=50;TCF=1;TCR=49;TR=42;WE=50322665;WS=50322609;set=Platypus	GT:AD:AF:DP	0/1:8,42:0.84:50
chr19	50331678	rs5828413	CT	C	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr19	50335477	rs116436223	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr19	50341394	rs75521048	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr19	50354211	rs7260222	C	T	4620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.246;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:216,226:0.51:442
chr19	50358133	rs75478119	T	G	3513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=11.12;ReadPosRankSum=1.145;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:146,170:0.54:316
chr19	50358170	rs1290657	T	C	11263.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.95;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	50358447	rs80292214	G	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	50361760	rs151225873	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.926;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr19	50363126	rs116593010	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	50363175	rs1290646	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	50365147	rs3739205	AC	A	3246.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chr19	50368361	rs1290649	T	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	50375035	rs2290774	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	50375242	rs2290775	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	50376380	rs375398248	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr19	50380858	rs731826	T	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=-1.040;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	50383591	rs8109661	A	G	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	50383636	rs3745486	T	C	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr19	50384444	rs12609902	G	A	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.010;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:79,73:0.48:152
chr19	50384494	rs12609883	C	T	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:188,176:0.48:364
chr19	50386340	rs746738	T	C	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	50387729	rs35681527	C	T	5998.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:258,295:0.53:553
chr19	50387750	rs2305915	G	C	5459.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:355,285:0.45:640
chr19	50391639	rs2290773	C	G	6938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=0.709;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:429,370:0.46:799
chr19	50393269	rs56359967	A	G	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:137,135:0.50:272
chr19	50394186	.	GC	G	158.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;MQRankSum=-0.366;QD=22.69;ReadPosRankSum=1.981;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,5:0.71:7
chr19	50394205	.	T	C	637.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.808;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=-0.139;QD=22.78;ReadPosRankSum=-1.571;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr19	50398334	.	C	T	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=1.261;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:131,110:0.46:241
chr19	50399384	rs3840921	G	GC	1655.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr19	50404939	rs1290754	T	G	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	50411742	rs892028	A	G	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr19	50412417	rs999583	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	50434001	rs140839458	C	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	50435747	rs283525	T	C	14148.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.26;ReadPosRankSum=2.147;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:2,411:1.00:413
chr19	50435747	.	TTACCCCCC	CTACCCCCA,CTACCCCCC	1237	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=42,96;NR=42,101;PP=1237,1179;QD=15.362712796;SC=GGAGCCTCCCTTACCCCCCGG;SbPval=0.47;Source=Platypus;TC=197;TCF=96;TCR=101;TR=84,197;WE=50435763;WS=50435737;set=Platypus	GT:AF:DP	0/1:0.43:197
chr19	50435755	rs1152227	C	A	4191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.211;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:217,213:0.50:430
chr19	50435862	rs283526	C	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr19	50462244	rs1811375	G	A	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:101,114:0.53:215
chr19	50473221	rs377111720	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.169;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=59.503;MLEAC=1;MLEAF=0.500;MQ=47.03;MQRankSum=-8.820;QD=0.79;ReadPosRankSum=-1.682;SOR=6.175;set=HC	GT:AD:AF:DP	0/1:173,25:0.13:198
chr19	50474574	.	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-1.618;QD=4.57;ReadPosRankSum=-1.247;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr19	50484315	rs181048565	G	C	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:98,91:0.48:189
chr19	50493120	rs283517	T	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr19	50496281	rs113770287	G	GAC	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	50498416	rs149272924	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr19	50578500	.	C	A	756.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr19	50657786	rs66651303	AG	A	7816.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	50665984	rs73932425	C	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr19	50666389	rs61742305	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr19	50750419	rs607227	C	T	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	50750497	rs1947424	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr19	50754013	rs187402466	G	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr19	50762418	rs1651553	A	G	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	50763889	rs12981413	C	T	16396.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.03;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr19	50764017	rs146099002	T	TGC	4433.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:11,178:0.94:189
chr19	50764079	rs140241247	A	AGT	1858.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	50766707	rs1529492	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	50771609	rs3745504	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	50771635	rs930086	T	C	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	50775742	rs1651543	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	50779151	rs8108435	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	50779500	rs708133	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	50779988	rs788337	A	T	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	50780186	rs7259185	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	50789967	rs10406788	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	50796352	rs651044	C	A	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr19	50796905	rs3745509	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr19	50796960	rs3745510	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr19	50805138	rs3826772	C	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	50810236	.	C	T	333.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr19	50812221	rs889002	A	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	50813169	rs12978083	A	C	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:205,170:0.45:375
chr19	50813263	rs627491	T	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	50819119	rs138988257	G	GGCT	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.009;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	50832152	rs375912738	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	50837859	rs56849250	C	CA	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=12.378;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.808;QD=20.87;ReadPosRankSum=-0.703;SOR=0.019;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr19	50863023	rs638294	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	50865535	rs676314	A	G	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	50868754	rs1274517	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	50869002	rs873834	G	A	96.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=16.07;ReadPosRankSum=0.210;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr19	50880741	rs2695121	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	50881326	rs28514894	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	50881822	rs34296657	A	ACAG	3818.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr19	50882008	rs2695122	A	G	4977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=1.852;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:273,255:0.48:528
chr19	50882169	rs2248949	A	G	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.38;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	50882169	.	ATCC	GTCC,GTCT	477	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=11,6;NR=39,20;PP=293,477;QD=6.55542425094;SC=TGGGAAGAGGATCCCCCAGGG;SbPval=0.55;Source=Platypus;TC=50;TCF=11;TCR=39;TR=50,26;WE=50882180;WS=50882159;set=Platypus	GT:AF:DP	0/1:1.00:50
chr19	50882172	rs41432149	C	T	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.079;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	50882918	rs2303045	G	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.366;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr19	50885456	.	C	T	255.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	50902331	rs1726787	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	50902382	rs1673025	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	50902659	rs2228665	C	G	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:244,221:0.48:465
chr19	50905042	rs20582	G	A	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:142,124:0.47:266
chr19	50905074	rs1726801	G	A	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:207,211:0.50:418
chr19	50905189	rs1726802	GC	TT	14479.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;JOINED;set=Intersection	GT:AD:AF:DP	0/1:328,369:0.53:697
chr19	50905310	rs1726803	G	A	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:208,219:0.51:427
chr19	50905412	rs1726804	A	G	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:177,183:0.51:360
chr19	50905762	rs1143666	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:78,64:0.45:142
chr19	50906026	rs1726806	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr19	50906298	rs1673044	C	T	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=1.439;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:94,71:0.43:165
chr19	50906529	rs1673043	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	50906785	rs2230244	C	T	6977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-1.587;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:375,358:0.49:733
chr19	50909358	rs1726807	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr19	50909389	rs1673041	T	G	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	50910284	rs2230246	G	A	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-1.363;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:96,63:0.40:159
chr19	50910293	rs2230247	C	T	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.067;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:112,67:0.37:179
chr19	50910658	rs3218755	C	T	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:233,214:0.48:447
chr19	50912126	rs1726790	G	A	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:154,184:0.54:338
chr19	50912936	rs3218767	G	GA	890.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr19	50916571	rs1274606	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	50916772	rs1274607	T	C	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:151,115:0.43:266
chr19	50918969	rs3219433	A	G	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-1.442;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:46,46:0.50:92
chr19	50919797	rs3218776	C	T	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-0.663;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:52,61:0.54:113
chr19	50919828	rs3218760	A	G	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-1.430;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:74,55:0.43:129
chr19	50920365	rs369535710	C	T	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr19	50920410	rs3212330	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr19	50920536	rs2463239	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.325;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:84,41:0.33:125
chr19	50920558	rs2463238	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr19	50921047	rs3219455	C	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.027;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	50921074	rs112856489	A	ACCCTGC	1571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=0.846;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:37,41:0.53:78
chr19	50921272	rs2445837	T	C	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr19	50922370	rs2244095	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	50926264	rs1673030	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	50936362	rs28516828	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	50936378	rs3765069	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=-1.829;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	50938353	rs59258373	C	T	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.420;QD=7.13;ReadPosRankSum=1.591;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:118,76:0.39:194
chr19	50938526	rs61464350	G	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr19	50938554	rs7258429	C	T	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr19	50940594	rs2293455	G	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr19	50946647	.	TGA	T	44	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=44;QD=26.0;SC=AATTTGGCTCTGAGAGAGAGA;SbPval=1.0;Source=Platypus;TC=14;TCF=5;TCR=9;TR=2;WE=50946656;WS=50946637;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chr19	50951689	rs2445835	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	50957675	.	CTG	C	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=2.085;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr19	50957679	.	T	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=1.416;QD=13.67;ReadPosRankSum=2.150;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	50958995	rs12980584	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.31;ReadPosRankSum=-0.441;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	50962062	rs3745518	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr19	50963265	rs2463248	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	50965272	rs25668	T	C	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	50969325	rs1274604	A	G	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	50971172	rs736768	C	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	50979495	rs2293458	G	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:97,83:0.46:180
chr19	50982060	rs3817541	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.28;ReadPosRankSum=-0.210;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	50982086	rs921938	C	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	50983545	rs2272324	A	G	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:207,201:0.49:408
chr19	50983930	rs10409679	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:86,75:0.47:161
chr19	50986074	rs14031	G	A	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	51009936	rs114547073	C	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr19	51014850	rs7254387	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	51015404	rs12977172	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	51017835	rs889131	G	A	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:2,523:1.00:525
chr19	51020903	rs61751956	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:72,55:0.43:127
chr19	51052189	rs11880112	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	51128661	rs16986142	T	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:130,161:0.55:291
chr19	51128856	rs10426057	A	C	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.060;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:46,58:0.56:104
chr19	51132905	.	G	A	187	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=44;MMLQ=26;MQ=54.09;NF=10;NR=2;PP=187;QD=18.4809343789;SC=CCTCAGACCCGGGAGTCCAGG;SbPval=0.99;Source=Platypus;TC=34;TCF=17;TCR=17;TR=12;WE=51132923;WS=51132899;set=Platypus	GT:AD:AF:DP	1/0:22,12:0.35:34
chr19	51133356	rs10407511	C	G	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.129;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:74,81:0.52:155
chr19	51140506	rs17849195	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	51152949	rs35816100	T	C	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr19	51159571	rs4801844	T	G	9501.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr19	51161088	rs10404821	C	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	51161197	rs116088642	A	C	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr19	51170370	rs144762908	G	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,51:0.45:114
chr19	51170706	rs3745521	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr19	51191172	rs12975345	A	G	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:91,97:0.52:188
chr19	51191968	rs73598635	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	51207287	rs114666504	C	T	5833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.840;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:319,294:0.48:613
chr19	51217405	rs139053043	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr19	51217730	rs11880981	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	51219091	rs34522248	C	CG	307.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;MQ=60.93;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	51228802	rs1053020	T	G	3745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=2.957;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:228,196:0.46:424
chr19	51261635	rs73046514	G	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr19	51261829	rs73046516	G	A	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:204,208:0.50:412
chr19	51261892	rs73046518	G	A	4811.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:253,247:0.49:500
chr19	51261951	rs11880363	G	T	10221.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	51262056	rs11883166	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	51262620	rs10424138	A	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	51294003	rs1978605	T	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr19	51294098	rs145475625	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	51294773	rs10412900	A	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr19	51296851	rs266124	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.374;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	51297944	rs266123	A	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr19	51302473	rs3833237	T	TAAG	3246.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr19	51305550	rs2659064	G	A	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.419;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:125,75:0.38:200
chr19	51305784	rs2560931	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr19	51321714	rs3212844	A	G	3862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=2.055;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:213,195:0.48:408
chr19	51321813	rs2411334	A	G	10050.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.11;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	51321827	rs3212842	G	A	3711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.989;QD=10.20;ReadPosRankSum=1.004;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:179,185:0.51:364
chr19	51321919	rs3212841	C	CCAGCCTTCGCAGGCCACACCCTGAAGCCACTCTCCACCCGCT	3249.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.52;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	51321953	rs3212858	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	51322312	rs5519	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	51323100	rs3212831	G	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	51323232	rs5517	T	C	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:163,121:0.43:284
chr19	51323378	rs3212830	C	T	5532.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:283,276:0.49:559
chr19	51323473	rs5516	C	G	11356.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr19	51323501	rs1054713	A	G	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	51323676	rs5515	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr19	51323881	rs2659103	T	G	85.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	51327063	rs36217621	G	C	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.560;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:82,101:0.55:183
chr19	51327163	rs34301743	GCC	G,GC	437.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/2:0,4,8:0.33,0.67:12
chr19	51327171	rs2739398	C	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.48;ReadPosRankSum=0.580;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	51329272	rs3212808	T	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	51330951	rs138137675	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	51331199	rs142271509	G	GT	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	51331204	.	T	TTG	508	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=4;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=12;PP=508;QD=44.5;SC=GCCCTGTTTTTGTTTGTTGTT;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=12;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	51331205	.	G	T	321	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=8;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=4;NR=12;PP=321;QD=22.2357007842;SC=CCCTGTTTTTGTTTGTTGTTG;SbPval=0.58;Source=Platypus;TC=16;TCF=4;TCR=12;TR=16;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	51331205	rs372866981	G	GT	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	51358333	rs266881	C	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,79:0.54:145
chr19	51359566	rs7252245	G	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr19	51361644	rs1810020	A	G	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	51362804	rs73932617	G	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:164,107:0.39:271
chr19	51363026	rs2659122	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	51363398	rs1058205	C	T	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-1.079;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:207,145:0.41:352
chr19	51380110	rs6070	T	A	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:142,102:0.42:244
chr19	51381777	rs198977	C	T	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:244,272:0.53:516
chr19	51391181	rs148723401	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr19	51411636	rs2569527	G	T	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	51412666	rs1654552	C	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,83:0.45:184
chr19	51412668	rs1654551	A	C	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-0.155;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:80,96:0.55:176
chr19	51413790	rs2242669	G	A	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr19	51413802	rs198969	G	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr19	51413906	rs2978642	A	T	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:281,217:0.44:498
chr19	51447065	rs1701949	T	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr19	51452250	rs183854	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	51452426	rs2232533	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chr19	51453393	rs200168079	GGGCGGGGCTCAGA	G	1728.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr19	51462619	.	C	CTG	38	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=26;MQ=55.32;NF=0;NR=2;PP=38;QD=20.5;SC=AACCCAGAGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=2;WE=51462627;WS=51462609;set=Platypus	GT:AD:AF:DP	0/1:7,2:0.22:9
chr19	51480671	rs59354651	AGGTT	A	616.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;MQ=60.34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	51482969	rs1701924	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	51482989	.	G	A	394.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	51484990	rs1991819	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	51485194	rs1654523	C	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	51485622	rs2659067	A	G	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	51487067	rs1275221	T	C	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:80,124:0.61:204
chr19	51487175	rs1624358	T	G	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	51499195	rs1612902	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	51503524	rs1701946	T	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr19	51504075	rs1701947	A	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr19	51507020	rs2075802	T	G	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	51518222	rs2075696	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51519114	rs2075691	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	51519236	rs2075690	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	51519259	rs2075689	C	T	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	51519346	rs1061368	G	C	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	51519364	rs2075688	T	G	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	51519451	rs2075687	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	51519480	rs12981039	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	51520487	rs3745535	A	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	51522286	rs2304156	C	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	51522291	rs2304157	G	C	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	51525703	rs1048344	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51530693	rs1474520	G	A	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.550;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:76,75:0.50:151
chr19	51535130	rs3745540	A	G	5413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-1.537;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:248,268:0.52:516
chr19	51535460	rs10635364	T	TCC	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	51537682	rs3865443	C	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,57:0.71:80
chr19	51537903	rs71185791	G	GA	395.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	51563965	rs2569474	G	A	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	51566873	rs10426620	G	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	51567744	.	CAA	C	214.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.708;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr19	51568488	rs76599303	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr19	51568544	rs76503822	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	51581146	.	G	A	893	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=3;HapScore=2;MGOF=40;MMLQ=26;MQ=55.15;NF=19;NR=6;PP=893;QD=37.1108485019;SC=GGGAGGAGGGGCTGGGGGCCT;SbPval=0.83;Source=Platypus;TC=68;TCF=46;TCR=22;TR=25;WE=51581156;WS=51581136;set=Platypus	GT:AD:AF:DP	1/0:43,25:0.37:68
chr19	51581148	.	TG	T	967	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=5;HapScore=2;MGOF=40;MMLQ=27;MQ=55.76;NF=13;NR=10;PP=967;QD=43.3913043478;SC=GAGGAGGGGCTGGGGGCCTGG;SbPval=0.56;Source=Platypus;TC=56;TCF=32;TCR=24;TR=23;WE=51581156;WS=51581136;set=Platypus	GT:AD:AF:DP	1/0:33,23:0.41:56
chr19	51581185	.	T	TG	1073	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=2;MGOF=33;MMLQ=28;MQ=59.16;NF=21;NR=15;PP=1073;QD=30.75;SC=GAGGAGGGGCTGGGGCCTGGA;SbPval=0.18;Source=Platypus;TC=89;TCF=41;TCR=48;TR=36;WE=51581196;WS=51581175;set=Platypus	GT:AD:AF:DP	0/1:53,36:0.40:89
chr19	51581253	.	C	T	1337	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=26;MQ=59.9;NF=47;NR=42;PP=1337;QD=15.4131596915;SC=TCCATCCCACCGTGAAGACCA;SbPval=0.4;Source=Platypus;TC=199;TCF=112;TCR=87;TR=89;WE=51581261;WS=51581243;set=Platypus	GT:AD:AF:DP	0/1:110,89:0.45:199
chr19	51582090	rs79507858	G	A	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:232,216:0.48:448
chr19	51583003	rs6509518	A	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	51584858	rs2569490	C	T	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:66,38:0.37:104
chr19	51584916	rs2569491	G	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:103,80:0.44:183
chr19	51585091	rs2569492	T	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	51602298	rs12983578	C	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:60,78:0.57:138
chr19	51639183	rs74594605	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	51647987	rs148312470	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr19	51656218	rs273661	G	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.77;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	51656218	.	GAATATATCC	CAATATATCC,CAATATATCT	204	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=27;MQ=60.0;NF=17,7;NR=5,1;PP=160,204;QD=8.85323693396;SC=CTATACAGAGGAATATATCCG;SbPval=0.58;Source=Platypus;TC=22;TCF=17;TCR=5;TR=22,8;WE=51656235;WS=51656208;set=Platypus	GT:AF:DP	0/1:1.00:22
chr19	51656227	rs113693279	C	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-1.057;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	51656454	rs273662	A	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr19	51671188	rs76154252	C	G	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:89,95:0.52:184
chr19	51671457	rs141797944	TCTC	T	5477.73	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:173,146:0.46:319
chr19	51675752	rs139750636	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr19	51728641	rs2455069	A	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr19	51738920	rs61736475	T	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:127,97:0.43:224
chr19	51815243	rs4802779	G	C	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.775;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	51826854	rs145319303	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr19	51831759	.	GA	G,GAA	593.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.265;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.111;SOR=1.130;set=HC	GT:AD:AF:DP	1/2:30,42,46:0.36,0.39:118
chr19	51835892	rs11402251	T	TG	7587.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	51837171	rs7255306	A	G	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	51837213	rs7255412	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	51837332	rs10418551	A	G	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	51837344	rs11672414	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr19	51841417	rs34380065	C	T	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:134,133:0.50:267
chr19	51843589	rs6509528	G	T	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.341;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:101,96:0.49:197
chr19	51843808	rs7259266	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr19	51843813	rs142820621	G	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr19	51844978	rs8105710	G	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,57:0.55:103
chr19	51845371	rs10414211	T	G	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr19	51853468	rs4802789	C	T	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	51856619	rs2004309	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	51856631	rs3889312	G	A	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=45.24;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	51856641	rs3889313	G	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=45.10;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	51857874	rs61361626	C	CCCACAG	2455.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr19	51869346	rs3786625	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr19	51871178	rs35337369	A	G	6616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=0.856;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:315,343:0.52:658
chr19	51871295	rs115724427	C	T	5097.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:197,251:0.56:448
chr19	51871357	rs3745402	C	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:71,90:0.56:161
chr19	51871913	rs73934365	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr19	51874950	rs3009	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	51874965	rs61128593	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr19	51875819	rs73934368	G	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr19	51883727	rs2547318	G	A	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	51883882	rs73934370	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:110,119:0.52:229
chr19	51890512	rs73933350	G	A	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr19	51892218	rs3826665	G	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	51892683	rs8104425	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	51892812	rs3810094	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	51892850	rs3810095	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	51919445	rs200688806	AAGAG	A	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=7.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.105;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:82,38:0.32:120
chr19	51919949	rs9304711	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	51920613	rs1010425	C	T	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,295:1.00:296
chr19	51984725	rs8106673	T	A	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	51994813	rs16982733	G	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.89;ReadPosRankSum=-0.349;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	51994851	rs16982735	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.351;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	51994926	rs7245807	T	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr19	52000624	rs3752135	T	G	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	52000672	rs3829658	G	A	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	52001485	rs11668530	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:151,119:0.44:270
chr19	52002317	rs4801871	G	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	52002488	rs968491	C	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	52002729	rs2009362	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	52003058	rs10420446	C	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	52003089	rs10420457	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	52003331	rs6509544	G	C	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	52004469	rs3810108	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr19	52004551	rs3810109	C	T	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr19	52004743	rs3810110	G	A	10926.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	52004791	rs66949844	G	GC	19396.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr19	52004795	rs61742108	G	T	19670.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	52031162	rs897783	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	52031648	rs10419617	A	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	52032964	rs3976745	C	G	11050.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr19	52033158	rs35931837	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,65:0.49:134
chr19	52033742	rs2305772	G	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	52034940	rs1551559	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	52085291	rs1543923	T	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.878;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr19	52097177	rs7253296	T	C	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	52101918	rs1868947	T	C	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	52102232	rs58593232	TGA	T	4070.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	52104489	rs8113451	C	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	52104560	rs3752127	T	C	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=25.98;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	52104713	rs3752126	G	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.26;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	52130788	rs8104955	G	A	3629.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:152,177:0.54:329
chr19	52130830	rs8107754	C	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	52130925	rs8108074	G	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.722;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr19	52130931	rs8108078	G	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=21.95;ReadPosRankSum=-0.186;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	52131310	rs61736486	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,70:0.44:158
chr19	52132524	.	T	TACACACACAC	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.539;QD=20.95;ReadPosRankSum=0.684;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	52132986	rs200975295	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.72;QD=25.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	52133060	rs2278833	G	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=25.17;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	52148617	rs4544342	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	52148804	rs885266	A	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	52148918	rs1868952	C	G	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=26.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	52148980	rs11424909	C	CA	356.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.69;QD=39.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	52148981	.	C	CACACACA	356.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.59;QD=35.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	52149165	rs71358847	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.09;QD=25.13;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	52208277	rs11382950	G	GC	4364.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	52208492	rs34764077	G	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr19	52227137	.	TAC	T,TACACACACACAC	1471.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.66;QD=28.30;SOR=1.552;set=HC	GT:AD:AF:DP	1/2:1,21,30:0.40,0.58:52
chr19	52249211	rs867228	T	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,90:0.50:180
chr19	52249672	rs1042229	A	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,138:0.51:269
chr19	52249702	rs2070746	G	T	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:124,126:0.50:250
chr19	52249947	rs2070745	C	G	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:131,100:0.43:231
chr19	52250216	rs5030878	A	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	52327784	rs3752125	C	T	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-1.093;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:147,123:0.46:270
chr19	52364167	rs73570027	G	A	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=1.510;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:62,46:0.43:108
chr19	52376507	rs2288868	T	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	52376952	rs8107969	T	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	52380681	rs3764540	T	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	52381552	rs12151288	A	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	52381616	rs17778649	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr19	52381862	rs12150982	C	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	52383443	rs73576171	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	52383510	rs8110531	C	T	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	52383556	rs8110546	C	A	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	52383569	rs8110461	A	C	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	52399919	rs60060478	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,65:0.49:133
chr19	52400356	rs56108326	G	C	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr19	52403516	rs1549931	T	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	52439363	rs57398651	G	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr19	52443377	rs10409737	A	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	52443405	rs10411484	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr19	52447769	rs79726751	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr19	52448669	rs11880193	G	C	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:94,84:0.47:178
chr19	52449072	rs10688542	C	CTG	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	52471769	rs2278417	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr19	52471813	rs2278419	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr19	52472295	rs4986773	A	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:79,81:0.51:160
chr19	52496149	rs16983353	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,79:0.46:172
chr19	52497250	rs1978717	G	A	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:153,111:0.42:264
chr19	52497943	rs10500311	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr19	52504920	rs2903709	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	52505641	rs10714016	GT	G	1191.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:81,73:0.47:154
chr19	52520714	rs12976476	G	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	52521296	rs9636139	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr19	52521928	rs12610953	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	52537576	rs11666149	T	G	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:112,87:0.44:199
chr19	52544616	rs16983401	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr19	52568422	rs61743893	T	G	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,91:0.46:198
chr19	52618044	rs16983489	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr19	52619065	rs3764537	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:131,123:0.48:254
chr19	52620334	rs45468391	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr19	52627349	rs8100114	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr19	52633871	rs77331480	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr19	52658510	rs8113504	T	C	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	52659991	rs1821278	A	G	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:62,94:0.60:156
chr19	52660279	rs1366245	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr19	52664019	rs3794976	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	52693277	rs13344984	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	52693289	rs67495004	G	GC	1504.37	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:8,72:0.90:80
chr19	52693298	rs17554825	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	52693457	rs79308790	A	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr19	52693509	rs114390941	T	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr19	52704961	rs10420138	T	C	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	52709064	rs10422583	G	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	52786700	.	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.509;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	52803669	rs3217319	CTG	C	1542.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:78,47:0.38:125
chr19	52825235	rs8102373	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,42:0.46:91
chr19	52852523	rs321953	T	C	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr19	52856955	rs1961205	C	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr19	52869022	rs2241586	G	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr19	52869278	rs321937	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr19	52869312	rs162120	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr19	52869534	rs162119	G	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:102,94:0.48:196
chr19	52870052	rs1054612	C	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr19	52873023	rs707312	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	52877885	.	C	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.582;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	52893473	rs7253837	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.900;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	52905067	rs324091	A	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.281;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr19	52909303	rs2290745	C	T	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:207,177:0.46:384
chr19	52909458	rs2245620	T	G	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	52909989	rs11668956	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	52917590	rs162124	G	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr19	52917626	rs162123	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr19	52920006	rs10664588	C	CTG	2164.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr19	52934741	rs118147154	A	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-1.070;QD=17.65;ReadPosRankSum=-1.118;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:58,48:0.45:106
chr19	52934751	rs73588012	A	G	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.403;QD=16.82;ReadPosRankSum=-2.478;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:66,67:0.50:133
chr19	52934778	rs73588013	G	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,97:0.50:194
chr19	52934919	rs73588015	T	A	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:79,105:0.57:184
chr19	52935005	rs201189034	TGTG	T	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	52937100	rs2560996	G	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr19	52937530	rs2560997	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	52938361	rs11084161	C	A	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	52938417	rs11084162	A	G	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	52938459	rs11084163	A	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	52940931	rs1428179	A	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	52941171	rs1428180	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	52941540	rs1366257	G	A	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	52941618	rs1366258	A	C	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	52941847	rs1366259	A	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	52942159	rs2608497	A	G	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	52942445	rs2608498	C	T	15511.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:50,401:0.89:451
chr19	52942495	rs2561001	G	A	13427.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:85,328:0.79:413
chr19	52942734	rs2446079	C	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	52954507	rs324104	T	C	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	53014346	rs161931	G	A	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:101,93:0.48:194
chr19	53014787	rs35356792	A	G	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:104,142:0.58:246
chr19	53015384	rs4802965	A	G	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:72,102:0.59:174
chr19	53075519	rs8104138	G	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	53075734	rs3826655	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	53077258	rs75491966	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr19	53077411	rs162832	T	C	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	53085416	rs12975229	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr19	53085659	rs366793	C	T	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	53085813	rs3745101	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr19	53086124	rs373554	C	A	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr19	53086598	rs3745102	G	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:95,74:0.44:169
chr19	53099965	rs2279151	A	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	53099975	rs2279152	C	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	53100585	rs1802617	G	T	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr19	53117531	rs1056185	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	53117809	rs10406458	C	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	53209553	rs4085566	GG	AT	9494.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	53270384	rs1820128	A	G	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr19	53303527	rs8107444	A	G	12105.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:2,472:1.00:474
chr19	53304563	rs13382164	T	C	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr19	53311395	rs7257656	G	A	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr19	53344051	rs112227284	T	C	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-1.766;QD=1.86;ReadPosRankSum=-0.759;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:474,107:0.18:581
chr19	53344118	rs10419826	C	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.922;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-11.247;QD=1.29;ReadPosRankSum=-1.714;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:394,73:0.16:467
chr19	53344426	rs12462929	T	C	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.912;QD=5.26;ReadPosRankSum=0.868;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:306,148:0.33:454
chr19	53344701	rs10420793	A	G	3088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.959;QD=5.97;ReadPosRankSum=-0.299;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:340,177:0.34:517
chr19	53345060	rs61747364	G	C	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:183,65:0.26:248
chr19	53345076	rs61747369	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:189,75:0.28:264
chr19	53345095	rs61729939	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:211,88:0.29:299
chr19	53345110	rs61729942	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:221,102:0.32:323
chr19	53345176	rs61732713	C	T	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:318,195:0.38:513
chr19	53345447	rs60596790	C	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr19	53351266	rs7256165	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:92,32:0.26:124
chr19	53369486	rs35128688	CAT	C	1264.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	53370013	rs12973227	C	G	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-1.023;QD=5.37;ReadPosRankSum=1.707;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:126,64:0.34:190
chr19	53384185	rs6509701	C	T	5382.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:75,240:0.76:315
chr19	53411347	rs7256037	C	A	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.978;QD=4.34;ReadPosRankSum=-1.174;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:346,136:0.28:482
chr19	53411368	rs7256260	G	A	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.306;QD=4.14;ReadPosRankSum=-1.481;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:347,134:0.28:481
chr19	53411448	rs7256400	G	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.104;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:170,57:0.25:227
chr19	53452965	rs3745177	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:79,27:0.25:106
chr19	53453777	rs8110062	C	T	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	53454475	rs33949217	C	CACT	10475.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	53454789	rs12459008	A	T	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:130,219:0.63:349
chr19	53456164	rs73584424	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:105,68:0.39:173
chr19	53456490	rs66502718	C	CA	78.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-0.366;QD=8.72;ReadPosRankSum=0.566;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	53513512	rs11882663	G	C	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:300,131:0.30:431
chr19	53513573	rs11882631	C	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:278,105:0.27:383
chr19	53514079	rs11883264	C	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.372;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:118,44:0.27:162
chr19	53518178	rs140876268	C	G	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=48.27;MQRankSum=-6.609;QD=3.80;ReadPosRankSum=-0.817;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:435,160:0.27:595
chr19	53576465	rs329734	C	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	53576589	rs329733	C	G	15313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=-0.996;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:177,694:0.80:871
chr19	53577419	rs8105668	G	C	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	53577668	rs167918	C	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr19	53589677	rs329718	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:234,86:0.27:320
chr19	53612055	rs10410030	T	C	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:238,105:0.31:343
chr19	53618445	rs8099853	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	53618913	rs8104108	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.588;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr19	53619720	rs16984484	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr19	53644443	rs1661935	G	A	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:398,254:0.39:652
chr19	53645291	rs2195310	T	C	9822.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	53651845	rs10694633	T	TTC	4459.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	53667637	rs4803054	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	53667804	rs4801958	C	T	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	53667913	rs12459469	A	G	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	53667940	rs12459471	A	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	53669273	rs4801959	T	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	53669492	rs12460170	A	G	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	53669653	rs12460233	C	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	53678924	rs4289099	C	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	53706984	rs12610332	G	A	5386.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:123,254:0.67:377
chr19	53707045	rs73935275	A	G	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:329,166:0.34:495
chr19	53707097	rs11084225	T	C	5464.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:110,256:0.70:366
chr19	53707289	rs7249771	C	T	5827.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:114,269:0.70:383
chr19	53707592	rs28477265	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr19	53716190	rs10775558	A	G	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:75,132:0.64:207
chr19	53716278	rs10853858	A	G	3702.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:93,172:0.65:265
chr19	53716460	rs10853859	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr19	53727591	rs10401984	T	C	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	53727989	rs10408128	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	53728096	rs7248561	A	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=45.34;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	53728105	rs7248883	G	C	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=41.33;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	53728160	rs7248781	C	T	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	53728280	rs7248812	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	53728326	rs7249238	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	53733101	rs4411615	A	G	31.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	53733328	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.986;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	53755007	rs28676766	T	A	1825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.71;ReadPosRankSum=1.280;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr19	53755015	rs45575234	A	G	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=0.927;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:22,42:0.66:64
chr19	53760825	rs2914370	C	T	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:64,142:0.69:206
chr19	53769861	rs16984664	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr19	53769898	rs57086064	A	G	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.34;ReadPosRankSum=0.487;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	53769903	rs80041332	G	T	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=0.804;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr19	53769906	rs57683214	G	C	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-0.063;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr19	53770764	rs112711591	G	A	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:83,109:0.57:192
chr19	53784704	rs55943466	G	A	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.743;QD=26.14;ReadPosRankSum=0.255;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:25,43:0.63:68
chr19	53784709	rs57846138	C	T	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-1.678;QD=24.39;ReadPosRankSum=-0.385;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:26,48:0.65:74
chr19	53784788	rs28669322	G	A	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	53784899	rs75521956	C	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr19	53786255	rs8102543	G	T	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=43.28;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	53786258	rs8102246	A	T	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=46.32;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	53787375	rs113804227	C	T	4858.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:216,242:0.53:458
chr19	53787832	rs2865242	G	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=44.50;MQRankSum=-3.797;QD=21.62;ReadPosRankSum=3.791;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	53787841	rs2865243	A	G	671.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=0.000;QD=28.00;ReadPosRankSum=1.564;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:1,23:0.96:24
chr19	53788046	rs34943875	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.19;QD=28.04;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	53793042	rs8109165	G	A	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr19	53793162	rs35880972	C	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:325,126:0.28:451
chr19	53793574	rs2865248	A	G	6047.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	53802207	rs2115305	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-1.378;QD=15.59;ReadPosRankSum=1.077;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	53802337	rs1965725	A	C	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=-6.223;QD=15.98;ReadPosRankSum=-2.124;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr19	53802342	rs1965724	G	A	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-4.659;QD=15.79;ReadPosRankSum=-3.237;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr19	53802669	rs115441838	G	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-1.747;QD=0.97;ReadPosRankSum=0.890;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:401,76:0.16:477
chr19	53803121	rs75059813	C	G	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:132,158:0.54:290
chr19	53818564	rs73055190	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:131,59:0.31:190
chr19	53818603	rs10439122	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr19	53849446	rs4803089	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.242;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	53849632	rs11406858	G	GC	2462.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	53849700	rs4803090	G	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr19	53875494	rs7252803	A	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:155,64:0.29:219
chr19	53875523	rs7253268	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:192,78:0.29:270
chr19	53875569	rs7253278	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:264,90:0.25:354
chr19	53884412	rs4438413	G	A	9088.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	53885276	rs60179423	C	A	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	53885352	rs58896082	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	53905129	rs111753331	TA	T	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-0.588;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:11,57:0.84:68
chr19	53905469	rs3975046	A	G	4034.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:96,184:0.66:280
chr19	53905501	.	CTTTTTT	C,CT	2134.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.298;QD=33.88;ReadPosRankSum=0.339;SOR=0.904;set=HC	GT:AD:AF:DP	1/2:3,29,31:0.46,0.49:63
chr19	53910912	rs2061773	G	A	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	53911041	rs116731689	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:236,115:0.33:351
chr19	53911973	rs10425136	A	G	19340.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr19	53912242	rs10426347	G	A	12898.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr19	53926213	rs28584426	G	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-3.202;QD=1.20;ReadPosRankSum=-0.113;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr19	53926318	rs36087592	T	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.62;MQRankSum=1.599;QD=34.09;ReadPosRankSum=-1.106;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr19	53926320	rs34818233	T	G	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.62;MQRankSum=1.599;QD=34.09;ReadPosRankSum=-1.220;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr19	53926556	rs114835795	G	C	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=3.786;QD=18.60;ReadPosRankSum=1.278;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:13,71:0.85:84
chr19	53958126	rs2708743	T	G	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	53958263	rs1984432	G	A	12525.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr19	53959343	rs2708742	G	A	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:392,217:0.36:609
chr19	53959568	rs2617726	G	C	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:475,191:0.29:666
chr19	53983514	rs149591313	C	G	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.573;QD=4.51;ReadPosRankSum=-0.285;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:168,73:0.30:241
chr19	53991335	rs2617675	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-2.168;QD=4.22;ReadPosRankSum=0.274;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	53991404	rs2617674	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	53993670	rs2617667	G	A	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=2.517;QD=5.13;ReadPosRankSum=-0.341;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:283,132:0.32:415
chr19	53993681	rs73938812	T	C	2233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=2.681;QD=5.11;ReadPosRankSum=1.352;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:300,137:0.31:437
chr19	53995004	rs2708845	G	A	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:234,107:0.31:341
chr19	54007145	rs72487103	G	A	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:4,151:0.97:155
chr19	54072757	rs3746304	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	54074747	rs3746301	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr19	54075076	rs6509792	A	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.596;QD=3.49;ReadPosRankSum=1.057;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:121,41:0.25:162
chr19	54075126	rs6509793	C	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.126;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr19	54080144	rs8109631	A	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.687;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:108,47:0.30:155
chr19	54105519	.	T	TGG	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.603;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	54105521	.	GGTGTGT	G	242.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	54105566	.	G	C	49	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=2;HapScore=2;MGOF=66;MMLQ=27;MQ=59.71;NF=2;NR=3;PP=49;QD=16.7542425094;SC=GTGTGTGTGTGCCAGCCTCCC;SbPval=0.54;Source=Platypus;TC=12;TCF=4;TCR=8;TR=5;WE=54105574;WS=54105556;set=Platypus	GT:AD:AF:DP	1/1:7,5:0.42:12
chr19	54106547	rs1541925	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	54140338	rs58608236	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr19	54169778	rs76045662	T	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr19	54172317	rs1968439	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.56;QD=22.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	54177273	rs7258128	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	54182249	rs7256893	T	C	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-2.798;QD=4.93;ReadPosRankSum=3.146;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:235,109:0.32:344
chr19	54185306	rs28542169	A	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-2.259;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr19	54185311	rs28653280	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-2.953;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr19	54188219	rs2060230	G	A	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.73;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	54197633	rs10413288	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,48:0.42:113
chr19	54197761	rs10415265	T	C	3347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=1.173;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:393,207:0.34:600
chr19	54198461	rs11672638	A	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.055;QD=2.50;ReadPosRankSum=-0.230;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:208,54:0.21:262
chr19	54198559	rs10420348	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:188,100:0.35:288
chr19	54200922	rs57056811	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,58:0.50:117
chr19	54201810	rs71189852	G	GT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.310;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	54203199	rs2116850	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:162,87:0.35:249
chr19	54204650	.	G	GT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.816;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:65,23:0.26:88
chr19	54205961	rs10414727	T	A	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:124,61:0.33:185
chr19	54209600	rs4803164	A	G	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:160,75:0.32:235
chr19	54209679	rs7251827	T	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr19	54211903	rs7256241	T	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr19	54215465	rs4803166	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	54216790	.	T	TTTGG	1173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=4.572;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.738;QD=13.65;ReadPosRankSum=1.659;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:29,57:0.66:86
chr19	54216813	rs2865855	A	T	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.142;QD=30.10;ReadPosRankSum=0.946;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:20,49:0.71:69
chr19	54219769	rs4801998	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chr19	54220019	rs11306531	GT	G	906.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr19	54224191	rs12973211	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	54224285	rs58416318	CA	C	5215.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=22.10;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	54225616	rs10426037	T	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	54240088	rs77959394	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:419,161:0.28:580
chr19	54242693	rs140276616	G	GCTGACCGTGGTAATA	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.006;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-2.698;QD=2.10;ReadPosRankSum=0.833;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:133,18:0.12:151
chr19	54242761	rs60519699	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-1.265;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr19	54255878	rs56196717	GTTT	G	971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.921;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.08;ReadPosRankSum=0.282;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr19	54257185	rs611356	C	G	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=50.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	54257190	rs62144158	AC	GA	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=45.18;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	54261644	rs3901466	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	54291289	rs28461391	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	54291832	rs12983273	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr19	54308554	rs4806773	C	T	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:95,151:0.61:246
chr19	54310961	rs2866112	G	C	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,122:0.65:188
chr19	54312796	rs58572468	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.057;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	54313566	rs111234757	G	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:250,124:0.33:374
chr19	54314585	rs6509827	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	54327313	rs34436714	C	A	10663.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:3,416:0.99:419
chr19	54376625	rs112349507	C	CA	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.810;QD=7.86;ReadPosRankSum=0.357;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	54385437	rs307942	A	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:121,65:0.35:186
chr19	54385820	rs2547362	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:212,106:0.33:318
chr19	54387313	rs307956	A	T	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	54392748	rs307946	C	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr19	54392826	rs307945	A	C	4820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=45.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=0.957;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:278,267:0.49:545
chr19	54393044	rs201889726	C	T	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:306,171:0.36:477
chr19	54396006	.	GCACA	G	650.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr19	54396046	rs146099614	G	GCACA	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.311;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr19	54445594	rs11324363	AG	A,AGG	13890.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.187;QD=26.41;ReadPosRankSum=0.385;SOR=1.048;set=HC	GT:AD:AF:DP	1/2:4,326,196:0.62,0.37:526
chr19	54481334	rs113021440	A	C	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:60,165:0.73:225
chr19	54483306	rs11880008	G	A	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	54483311	.	CGTGTGTGTGT	CGT,C	1800.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=156;set=Intersection	GT:AF:DP	0/1:0.61:85
chr19	54483339	rs12979538	T	C,TGC	1611.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.68,0.25:71
chr19	54496497	rs115964462	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	54502791	rs158199	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	54503007	rs147457475	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,43:0.43:101
chr19	54544177	rs1035829	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr19	54545390	rs34610948	A	AC	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr19	54554942	rs4442924	C	A	139.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	54561493	rs202006993	T	TA	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=2.104;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:173,82:0.32:255
chr19	54566901	rs662850	C	T	3485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-3.967;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:489,219:0.31:708
chr19	54579363	rs4806706	C	A	6279.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:204,299:0.59:503
chr19	54584378	rs8112586	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	54584438	rs3859511	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr19	54600232	rs1657535	A	C	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	54603130	rs4806708	C	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.102;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr19	54604194	rs3760698	G	C	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:109,258:0.70:367
chr19	54606209	rs254260	T	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	54606405	rs254259	T	C	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:111,206:0.65:317
chr19	54609027	rs254257	A	G	5873.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:135,267:0.66:402
chr19	54609170	rs254256	A	G	15117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=-0.198;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:259,384:0.60:643
chr19	54609178	rs254255	C	G	15928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=-0.488;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:284,425:0.60:709
chr19	54609692	rs254266	T	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	54609746	rs8100254	G	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.001;QD=9.38;ReadPosRankSum=-0.538;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	54611287	rs621147	G	A	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr19	54611560	rs254263	C	G	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr19	54613420	rs12609379	G	A	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.518;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:167,64:0.28:231
chr19	54618441	rs75497563	C	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:57,89:0.61:146
chr19	54626055	rs56220912	C	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr19	54627039	rs35291886	GCACA	G	2247.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr19	54627097	rs2303557	T	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	54627462	rs56234781	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr19	54631376	rs12977981	G	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=1.166;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	54631378	rs171703	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.74;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	54631381	rs45513391	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.22;ReadPosRankSum=1.756;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	54631877	.	T	TC	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.681;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	54631880	rs74716353	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	54632352	rs608608	C	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	54632423	rs655240	T	C	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	54647078	rs34281370	T	TGG	318.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	54649671	rs36665	T	C	24624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=0.056;SOR=0.478;set=HC	GT:AD:AF:DP	1/1:14,977:0.99:991
chr19	54651774	rs35247489	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr19	54652203	rs43211	T	C	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	54659647	rs142913817	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:220,101:0.31:321
chr19	54664209	rs36657	G	C	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.270;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:189,93:0.33:282
chr19	54664752	rs36656	A	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:202,112:0.36:314
chr19	54665970	rs36655	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:144,94:0.39:238
chr19	54666060	rs12978996	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr19	54666357	rs2289146	C	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	54667709	.	CTTTTT	C	1292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=18.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.06;ReadPosRankSum=2.240;SOR=6.666;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr19	54667748	rs36654	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.744;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr19	54672535	.	CT	C	347.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=38.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	54672540	.	CTTTCTTTCT	C	347.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=38.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	54676763	rs641738	C	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:322,160:0.33:482
chr19	54676814	.	G	GC	1203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.294;QD=6.08;ReadPosRankSum=-2.882;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:143,55:0.28:198
chr19	54677759	rs4806721	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	54677897	rs10416555	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:318,150:0.32:468
chr19	54687334	rs254283	C	G	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:307,155:0.34:462
chr19	54691225	rs1865961	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	54695163	rs593073	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	54696292	rs11420984	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.039;QD=2.93;ReadPosRankSum=0.438;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	54697079	rs7595	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	54697602	rs36622	G	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr19	54705317	rs158366	C	G	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	54705340	rs2304524	C	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	54705588	rs17305304	A	G	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr19	54705619	rs36614	A	G	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	54705641	rs17305311	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	54711258	rs2304523	T	G	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr19	54723355	rs255774	A	G	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	54723738	rs255772	G	C	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.98;QD=27.35;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	54723813	rs8101337	G	C	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.51;QD=41.79;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	54723822	rs2885369	GT	AC	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.71;QD=47.11;SOR=1.416;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	54723829	rs4023903	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.51;QD=45.97;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	54724352	rs368403726	T	G	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:8,59:0.88:67
chr19	54724377	rs199865602	G	A	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=50.53;MQRankSum=1.344;QD=36.29;ReadPosRankSum=-0.884;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:9,67:0.88:76
chr19	54724381	rs111355853	G	A	2967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=50.25;MQRankSum=1.204;QD=38.05;ReadPosRankSum=0.431;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:9,69:0.88:78
chr19	54724387	rs201534767	A	G	3009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=1.071;QD=37.62;ReadPosRankSum=0.408;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:9,71:0.89:80
chr19	54724389	rs200018123	C	G	2967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=49.83;MQRankSum=1.027;QD=36.64;ReadPosRankSum=0.793;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:9,72:0.89:81
chr19	54724407	rs1132608	C	T	3064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=49.02;MQRankSum=1.233;QD=34.44;ReadPosRankSum=1.622;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:11,78:0.88:89
chr19	54724430	rs1132606	TG	AA	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.285;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=23.911;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.16;MQRankSum=-5.475;QD=7.72;ReadPosRankSum=-3.828;SOR=2.797;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr19	54724457	.	T	C	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-11.534;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=145.914;MLEAC=1;MLEAF=0.500;MQ=41.82;MQRankSum=3.127;QD=20.18;ReadPosRankSum=3.960;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:74,99:0.57:173
chr19	54724458	.	A	G	3954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.348;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=122.851;MLEAC=1;MLEAF=0.500;MQ=41.86;MQRankSum=2.385;QD=22.22;ReadPosRankSum=3.038;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:77,101:0.57:178
chr19	54725835	rs201948566	G	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.60;QD=28.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	54725907	rs55662384	G	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr19	54726162	rs56182917	T	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;QD=30.87;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	54726226	rs75672336	T	C	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.53;QD=24.68;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	54726324	rs79304773	G	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.00;QD=26.84;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	54726347	rs76998994	T	A	101.90	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.95;QD=20.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	54726665	rs373978777	G	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.87;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	54726701	rs200031404	G	GTCC	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.13;QD=43.98;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	54726711	rs140063405	G	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=35.94;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	54726784	rs201613832	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.045;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-5.217;QD=0.68;ReadPosRankSum=-5.485;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr19	54726816	rs80332440	A	T	3118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=49.47;MQRankSum=2.913;QD=11.51;ReadPosRankSum=7.761;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:182,89:0.33:271
chr19	54726833	rs149695852	T	C	3118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.378;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.20;MQRankSum=2.696;QD=10.00;ReadPosRankSum=4.671;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:222,90:0.29:312
chr19	54726843	rs138124247	C	G	2833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.525;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.13;MQRankSum=3.093;QD=8.59;ReadPosRankSum=4.038;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:246,84:0.25:330
chr19	54726861	rs114813697	C	T	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.447;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=48.84;MQRankSum=2.190;QD=7.41;ReadPosRankSum=-0.063;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:280,84:0.23:364
chr19	54726870	rs117942579	C	G	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=48.91;MQRankSum=-3.588;QD=6.81;ReadPosRankSum=0.828;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:214,140:0.40:354
chr19	54726872	rs140228691	C	G	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.526;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=48.88;MQRankSum=2.135;QD=7.45;ReadPosRankSum=-3.061;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:266,82:0.24:348
chr19	54735619	rs7250243	G	A	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-1.428;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:361,105:0.23:466
chr19	54742999	rs8100079	C	A	7347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.207;QD=21.24;ReadPosRankSum=2.265;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:154,192:0.55:346
chr19	54743004	rs8099961	A	T	7220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.222;QD=22.01;ReadPosRankSum=2.862;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:147,181:0.55:328
chr19	54743056	rs10401694	C	T	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr19	54743544	rs7246690	G	A	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=1013;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.087;QD=0.81;ReadPosRankSum=0.605;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:842,141:0.14:983
chr19	54743747	rs10403230	C	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-4.728;QD=0.48;ReadPosRankSum=-1.066;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:497,72:0.13:569
chr19	54743758	rs7246746	C	A	5190.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:227,224:0.50:451
chr19	54744142	rs113149211	G	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-0.420;QD=2.90;ReadPosRankSum=-0.524;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:187,52:0.22:239
chr19	54744209	rs8105096	T	A	2786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=1.430;QD=5.87;ReadPosRankSum=1.514;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:367,108:0.23:475
chr19	54744210	rs8104206	A	G	3514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=7.396;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-2.366;QD=7.35;ReadPosRankSum=-1.938;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:366,112:0.23:478
chr19	54745438	rs375884989	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-2.906;QD=6.99;ReadPosRankSum=0.284;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	54745496	rs77659630	C	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=50.04;MQRankSum=-5.205;QD=10.48;ReadPosRankSum=-0.497;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr19	54745978	rs1052964	T	C	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:284,46:0.14:330
chr19	54745989	rs1052963	G	C	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:301,65:0.18:366
chr19	54746051	rs620207	A	C	6441.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:322,317:0.50:639
chr19	54746081	rs28445220	T	C	4984.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:397,278:0.41:675
chr19	54746298	rs141896220	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	54746528	rs75130216	C	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.86;MQRankSum=-1.156;QD=8.88;ReadPosRankSum=-0.061;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:96,92:0.49:188
chr19	54746611	rs146887808	T	C	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.97;QD=23.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	54754752	rs433291	T	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr19	54754778	rs150660840	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr19	54754820	rs429425	T	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.97;QD=31.52;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	54754932	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-1.593;QD=3.18;ReadPosRankSum=0.493;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr19	54754934	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-1.593;QD=3.18;ReadPosRankSum=0.493;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr19	54754942	rs142193233	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=0.693;QD=7.58;ReadPosRankSum=-2.881;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	54755922	rs12977062	CA	TG	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;JOINED;set=Intersection	GT:AD:AF:DP	0/1:123,50:0.29:173
chr19	54755994	rs417523	G	A	9582.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	54756019	rs112467225	T	C	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.609;QD=6.36;ReadPosRankSum=-1.390;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:249,138:0.36:387
chr19	54756024	rs405443	A	C	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:135,254:0.65:389
chr19	54756118	rs405152	A	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	54756142	rs72087	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	54756221	rs3843753	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.723;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr19	54756302	rs415860	A	G	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	54756657	rs434755	C	T	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-2.129;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:280,117:0.29:397
chr19	54760813	rs116212038	G	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:141,65:0.32:206
chr19	54778707	rs57307400	T	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=11.203;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-8.674;QD=3.00;ReadPosRankSum=3.149;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:87,31:0.26:118
chr19	54778732	.	G	A	722.77	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:73,38:0.34:111
chr19	54778822	rs370554702	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,8:0.19:42
chr19	54778834	.	G	A	169.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr19	54779797	rs73938622	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:126,44:0.26:170
chr19	54781364	rs7249967	C	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=0.409;QD=4.78;ReadPosRankSum=1.481;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:168,77:0.31:245
chr19	54781466	rs3859538	C	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=3.774;QD=6.06;ReadPosRankSum=-1.465;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr19	54781509	rs1808548	C	T	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr19	54781541	rs450937	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr19	54781554	rs451000	C	T	3370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.347;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-4.206;QD=21.07;ReadPosRankSum=-0.549;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:74,86:0.54:160
chr19	54781557	rs400942	T	C	3370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-4.175;QD=20.94;ReadPosRankSum=0.181;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:74,87:0.54:161
chr19	54781843	rs4022330	C	T	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr19	54782327	rs7247025	G	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:354,174:0.33:528
chr19	54782388	rs28405793	T	C	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=8.961;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-11.445;QD=8.97;ReadPosRankSum=-0.224;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:273,101:0.27:374
chr19	54782393	rs116027944	T	G	3368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=9.180;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-11.368;QD=9.31;ReadPosRankSum=-0.557;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:263,99:0.27:362
chr19	54782395	rs7246737	A	G	3365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=8.357;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-11.286;QD=9.62;ReadPosRankSum=-0.843;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:253,97:0.28:350
chr19	54782401	rs7247055	G	C	3089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.344;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=6.087;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-11.976;QD=9.51;ReadPosRankSum=0.239;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:240,85:0.26:325
chr19	54782512	rs61197744	G	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr19	54782919	rs386056	C	T	7962.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:149,374:0.72:523
chr19	54783128	rs10410270	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr19	54783375	rs373032	T	A	13609.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr19	54783521	rs383925	C	T	4587.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:89,199:0.69:288
chr19	54783923	rs366337	A	G	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	54797848	rs103294	C	T	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:106,126:0.54:232
chr19	54800222	rs368178	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	54800225	rs368177	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	54801910	rs3815936	A	G	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=45.24;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	54801916	rs3815937	A	G	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=43.75;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	54802105	rs1975046	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	54802540	rs4473306	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	54803504	rs6509862	A	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	54824177	rs1645785	C	T	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr19	54848157	rs76665615	A	G	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.338;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=4.318;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-19.438;QD=1.78;ReadPosRankSum=-1.466;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:350,86:0.20:436
chr19	54849463	rs12976217	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:173,65:0.27:238
chr19	54849481	rs7256494	T	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:199,77:0.28:276
chr19	54849566	rs2241385	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:97,49:0.34:146
chr19	54867572	rs7257187	C	T	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.514;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:40,107:0.73:147
chr19	54871664	rs74463408	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr19	54872731	rs140141368	C	T	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.901;QD=4.32;ReadPosRankSum=0.927;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:284,114:0.29:398
chr19	54876324	rs3745441	T	C	7642.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	54881780	rs3852907	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=45.93;MQRankSum=-1.941;QD=1.97;ReadPosRankSum=0.351;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr19	54881850	rs77507448	G	T	5857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.431;MLEAC=2;MLEAF=1.000;MQ=47.87;MQRankSum=-4.201;QD=19.40;ReadPosRankSum=2.994;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:35,267:0.88:302
chr19	54881922	rs4429394	G	A	2896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.11;MQRankSum=-1.588;QD=8.78;ReadPosRankSum=-0.430;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:240,90:0.27:330
chr19	54881931	rs10401703	T	C	2841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.43;MQRankSum=-1.690;QD=9.44;ReadPosRankSum=-1.202;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:217,84:0.28:301
chr19	54882031	rs4281841	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=41.28;MQRankSum=-0.915;QD=4.86;ReadPosRankSum=-1.367;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	54882068	rs4021843	A	G	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.49;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	54926249	rs17516390	T	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr19	54930822	rs35134302	A	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr19	54932399	.	C	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.828;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=37.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.650;SOR=5.234;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr19	54932400	.	C	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.386;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=36.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.901;SOR=5.293;set=HC	GT:AD:AF:DP	0/1:92,25:0.21:117
chr19	54937862	rs45477994	C	T	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,68:0.43:159
chr19	54940303	rs3745428	T	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.160;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr19	54940471	rs889149	C	T	2284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.086;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:343,142:0.29:485
chr19	54942419	rs79275620	C	G	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:210,130:0.38:340
chr19	54946784	rs3745420	A	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.200;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr19	54962299	rs10407417	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=-1.290;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	54962374	rs1035450	A	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=2.869;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr19	54962463	rs10407651	A	G	4189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-2.809;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:340,126:0.27:466
chr19	54962467	rs1035451	G	A	4259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-3.348;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:342,129:0.27:471
chr19	54964019	rs963352	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,29:0.30:98
chr19	54965527	rs7247170	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	54965860	rs3813148	G	A	4864.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:494,279:0.36:773
chr19	54965889	rs3813147	G	C	2947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-2.623;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:308,171:0.36:479
chr19	54966579	rs889147	C	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:239,136:0.36:375
chr19	54970067	rs116150645	C	T	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.415;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:256,88:0.26:344
chr19	54971229	rs3745437	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	54972401	rs149072994	C	T	3310.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:438,205:0.32:643
chr19	54973280	rs10423424	C	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.135;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:167,84:0.33:251
chr19	54974241	rs200146308	T	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.010;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:226,75:0.25:301
chr19	54974318	rs10406453	T	C	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.272;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:259,92:0.26:351
chr19	54974774	rs1981829	A	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.566;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	54976265	rs16960199	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr19	54976342	rs117435208	G	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.514;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr19	55009317	rs3865498	G	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.500;MQ=45.78;MQRankSum=0.158;QD=9.97;ReadPosRankSum=0.872;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr19	55009343	rs374374757	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr19	55009497	rs3865495	A	C	5948.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.804;MLEAC=2;MLEAF=1.000;MQ=48.10;MQRankSum=-2.235;QD=21.25;ReadPosRankSum=2.829;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:24,256:0.91:280
chr19	55013987	rs2042288	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr19	55014031	rs59342471	C	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:45,96:0.68:141
chr19	55014088	rs2042287	C	T	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	55019045	rs140904924	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr19	55019261	rs61737751	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:79,123:0.61:202
chr19	55019371	rs61737870	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr19	55019402	rs2277974	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr19	55043810	rs17606773	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr19	55044228	rs10553990	TTC	T	8118.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr19	55044241	.	CT	C	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.616;QD=1.74;ReadPosRankSum=0.717;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:142,57:0.29:199
chr19	55044387	rs62131628	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr19	55048437	rs11878667	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr19	55049088	rs143540272	A	AAG	1524.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=0.166;QD=42.35;ReadPosRankSum=-1.082;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr19	55049089	.	A	AG	794.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=7.957;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-0.520;QD=17.66;ReadPosRankSum=0.954;SOR=2.651;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr19	55049090	.	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	793.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.501;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=7.786;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-0.368;QD=17.26;ReadPosRankSum=0.567;SOR=2.902;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr19	55049104	.	G	GAAAGAAAGAAAGAAAGA	2764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-1.234;QD=30.05;ReadPosRankSum=-1.873;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:44,48:0.52:92
chr19	55049199	rs139003060	C	G	1372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.670;QD=4.49;ReadPosRankSum=1.099;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:218,88:0.29:306
chr19	55053911	rs7251007	G	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	55087313	rs7249811	T	G	8962.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:259,418:0.62:677
chr19	55087711	rs10407899	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr19	55088977	rs7257319	G	A	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:66,115:0.64:181
chr19	55105666	rs28635090	G	T	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;QD=43.24;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	55105673	rs28545324	C	T	8720.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.19;QD=44.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	55105722	rs28524012	G	C	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.55;QD=44.84;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	55105727	rs28469702	A	G	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.07;QD=45.06;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	55105743	rs1974982	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	55105803	rs10410699	C	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr19	55106317	rs10416917	A	G	11300.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr19	55106663	rs10417589	A	G	17504.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr19	55106778	rs10418391	G	A	10044.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	55106865	rs373854	T	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	55107308	rs35534776	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.70;QD=43.11;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	55107313	rs36029771	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.50;QD=44.41;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	55107336	rs34058364	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=41.69;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	55107343	rs10425981	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.10;QD=46.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	55107354	rs61739190	C	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.70;QD=42.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	55107629	rs28516458	T	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:80,141:0.64:221
chr19	55142101	rs3760861	G	A	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr19	55142930	rs3843752	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	55143083	rs1061679	T	C	10763.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	55143452	rs1061680	T	C	2697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.476;QD=4.44;ReadPosRankSum=2.365;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:427,180:0.30:607
chr19	55143491	rs1061681	G	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:429,179:0.29:608
chr19	55143982	rs10427127	T	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:223,103:0.32:326
chr19	55144141	rs10425827	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr19	55144556	rs61739173	G	A	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:360,199:0.36:559
chr19	55145058	rs2114510	C	G	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.017;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:352,124:0.26:476
chr19	55145093	rs2114511	G	C	2218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-2.078;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:445,162:0.27:607
chr19	55145481	rs2081658	CG	GA	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.210;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-8.190;QD=9.97;ReadPosRankSum=0.106;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:142,59:0.29:201
chr19	55145546	rs2098952	T	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-5.922;QD=3.37;ReadPosRankSum=0.920;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:114,38:0.25:152
chr19	55145587	rs2098953	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-6.088;QD=3.29;ReadPosRankSum=1.578;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr19	55146036	rs10414552	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr19	55146070	rs10414578	C	T	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=-7.479;QD=14.46;ReadPosRankSum=2.776;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:93,58:0.38:151
chr19	55146076	rs10414581	CA	TG	2279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.726;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=-7.668;QD=13.03;ReadPosRankSum=3.115;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:112,63:0.36:175
chr19	55146462	rs67481620	GT	G	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-0.802;QD=32.91;ReadPosRankSum=-0.800;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	55146469	rs62133428	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-0.802;QD=33.55;ReadPosRankSum=-0.877;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	55146565	rs10416070	G	A	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.42;MQRankSum=-0.437;QD=19.13;ReadPosRankSum=0.175;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr19	55146803	rs10416183	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr19	55146824	rs10421766	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr19	55146853	rs10422981	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr19	55147071	rs10421688	A	G	4012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-2.153;QD=33.16;ReadPosRankSum=-0.391;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:21,100:0.83:121
chr19	55147074	rs10421874	C	T	3940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-2.139;QD=33.68;ReadPosRankSum=-1.165;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:20,97:0.83:117
chr19	55147504	rs35869117	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.071;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-7.487;QD=3.43;ReadPosRankSum=0.814;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr19	55147508	.	GC	AT	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-7.426;QD=3.53;ReadPosRankSum=0.644;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr19	55147548	rs2363873	A	G	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:41,7:0.15:48
chr19	55147634	rs75923984	CA	TG	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.368;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-0.820;QD=10.12;ReadPosRankSum=1.795;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	55147639	rs62133430	T	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.899;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-0.820;QD=10.12;ReadPosRankSum=1.795;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	55147643	rs55960610	G	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-0.820;QD=10.12;ReadPosRankSum=1.795;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	55148331	rs8101240	C	T	7884.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:194,365:0.65:559
chr19	55148378	rs8101469	G	A	5032.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:120,233:0.66:353
chr19	55148390	rs8101262	C	A	4239.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:101,198:0.66:299
chr19	55174498	rs28366008	T	C	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	55175295	rs78235679	A	G	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:347,163:0.32:510
chr19	55175596	rs3050015	T	TGTGGGAG	5300.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr19	55175983	rs7253814	T	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr19	55177929	rs760186	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:54,72:0.57:126
chr19	55178162	rs11574576	A	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:181,106:0.37:287
chr19	55179364	rs1048801	A	G	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.370;QD=5.10;ReadPosRankSum=1.157;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:194,97:0.33:291
chr19	55239129	rs144626680	G	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.37;QD=27.08;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	55246731	rs77241525	C	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:150,154:0.51:304
chr19	55246812	rs180893263	G	C	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr19	55246897	rs62132699	T	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=14.702;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=3.325;QD=16.82;ReadPosRankSum=-0.815;SOR=0.022;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr19	55246904	rs17273316	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=11.481;MLEAC=1;MLEAF=0.500;MQ=50.17;MQRankSum=-2.919;QD=1.84;ReadPosRankSum=2.326;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	55246909	rs62132700	G	A	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=11.301;MLEAC=1;MLEAF=0.500;MQ=51.51;MQRankSum=3.851;QD=30.03;ReadPosRankSum=-2.139;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:6,24:0.80:30
chr19	55246911	rs62132701	A	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.139;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.671;MLEAC=1;MLEAF=0.500;MQ=51.85;MQRankSum=3.825;QD=33.36;ReadPosRankSum=-1.889;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr19	55258778	rs34843749	G	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	55258808	rs35861855	C	T	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:75,121:0.62:196
chr19	55266447	rs2916031	A	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.30;QD=22.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	55266496	rs28715756	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	55278630	rs2915996	G	C	6522.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:149,283:0.66:432
chr19	55278711	rs146842041	A	G	3901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.991;QD=4.74;ReadPosRankSum=-1.861;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:575,249:0.30:824
chr19	55281315	rs2304224	G	T	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:62,146:0.70:208
chr19	55284858	rs116929762	G	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.30;QD=29.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	55294927	.	A	G	2235.77	.	AC=1;AF=0.500;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	0/1:67,113:0.63:180
chr19	55315307	rs112963206	C	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=24.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	55317456	rs149046820	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.69;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55329854	rs144994606	G	A	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.37;MQRankSum=-0.707;QD=11.56;ReadPosRankSum=0.793;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr19	55329901	rs643347	A	G	2420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.54;MQRankSum=-2.496;QD=24.70;ReadPosRankSum=1.826;SOR=1.585;set=HC	GT:AD:AF:DP	1/1:2,96:0.98:98
chr19	55329922	rs1049150	A	T	3670.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.85;MQRankSum=-2.084;QD=24.47;ReadPosRankSum=-1.223;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:2,148:0.99:150
chr19	55333096	rs181336705	T	C	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.703;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-1.804;QD=9.03;ReadPosRankSum=0.004;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:61,51:0.46:112
chr19	55344170	rs78732506	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr19	55346373	rs4806583	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr19	55346409	rs4806584	T	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr19	55346424	rs4806585	C	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr19	55351100	.	G	C	6338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DP=508;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-3.526;QD=12.81;ReadPosRankSum=2.886;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:320,175:0.35:495
chr19	55351103	rs1049290	G	T	6350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-3.492;QD=12.93;ReadPosRankSum=2.387;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:316,175:0.36:491
chr19	55386624	rs11084376	C	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	55386890	rs11084377	A	G	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=1.200;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr19	55386920	rs8112766	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr19	55396613	rs10402324	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	55396677	rs61735068	A	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr19	55396900	rs1865096	A	G	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	55399311	rs7258679	G	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	55401170	rs16986050	A	G	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.874;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:117,56:0.32:173
chr19	55420801	rs3765013	C	A	2156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.123;QD=3.82;ReadPosRankSum=0.290;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:420,145:0.26:565
chr19	55420924	rs3765014	C	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:172,75:0.30:247
chr19	55421293	.	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.445;QD=4.11;ReadPosRankSum=1.675;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	55423488	rs73619967	T	C	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.108;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:165,75:0.31:240
chr19	55423530	rs73619969	C	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-1.280;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:283,130:0.31:413
chr19	55438940	.	AAAAC	A	8400.73	.	AC=2;AF=1.00;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=43.53;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	55439166	rs269933	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	55439197	rs269934	A	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	55441769	rs269949	G	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	55441902	rs269950	T	C	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	55441995	rs269951	A	G	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	55445174	rs269957	T	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr19	55447840	rs4806626	A	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.387;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr19	55450589	.	T	G	1241.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:204,80:0.28:284
chr19	55451050	rs10418277	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr19	55451232	rs775882	C	T	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:314,143:0.31:457
chr19	55451797	rs775883	C	T	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.973;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:269,78:0.22:347
chr19	55451890	rs775884	T	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:135,50:0.27:185
chr19	55452194	.	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.552;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr19	55452749	.	C	CAAAAAAA	150.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.54;ReadPosRankSum=-1.113;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	55453134	rs775886	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:117,52:0.31:169
chr19	55458816	rs703473	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:69,32:0.32:101
chr19	55481398	rs269912	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr19	55481669	rs269913	T	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	55488091	rs74696130	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.619;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr19	55488170	.	TGTTCTCTCTCTTTTTTTTTTTTTTTTTGATACGGAGTCTCGCTTGCTCTTTTGCCAGGCTGAA	T	873.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=16.015;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.830;QD=8.02;ReadPosRankSum=5.094;SOR=2.043;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr19	55488180	.	C	T	1344.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=22.961;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.232;QD=21.69;ReadPosRankSum=-3.502;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:27,35:0.56:62
chr19	55493441	rs55799796	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr19	55494188	rs3826883	C	T	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:54,65:0.55:119
chr19	55494451	rs200623569	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:106,38:0.26:144
chr19	55494651	rs34804158	A	G	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:107,213:0.67:320
chr19	55494740	rs10412915	T	C	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:91,225:0.71:316
chr19	55494881	rs11672113	C	G	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	55497506	rs71367132	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr19	55497660	.	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DP=376;set=Intersection	GT:AD:AF:DP	0/1:257,117:0.31:374
chr19	55497826	rs11667481	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	55497843	rs1036231	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	55501348	rs71269532	C	CA	144.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.318;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	55501579	rs1654495	A	C	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:84,179:0.68:263
chr19	55501834	rs1654496	C	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,85:0.62:136
chr19	55501866	rs12973968	G	C	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:80,139:0.63:219
chr19	55502098	rs181402750	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:100,52:0.34:152
chr19	55508669	.	T	A	359.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr19	55512137	rs12768	C	A	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.463;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:286,120:0.30:406
chr19	55512232	rs1043673	C	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:117,184:0.61:301
chr19	55512316	rs1043678	T	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr19	55512347	rs1043680	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr19	55525388	rs10417981	G	T	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:30,78:0.72:108
chr19	55525497	rs1671150	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr19	55525508	rs2886416	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr19	55525596	rs1654412	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr19	55525894	rs1671151	G	A	3575.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:83,161:0.66:244
chr19	55526345	rs1671152	T	G	15233.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:145,400:0.73:545
chr19	55526359	rs1654413	A	T	15171.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:137,368:0.73:505
chr19	55526373	rs2304166	G	C	7136.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:133,326:0.71:459
chr19	55526932	rs140499950	TTACTC	T	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr19	55527081	rs2304167	C	T	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:69,148:0.68:217
chr19	55527189	rs1671153	G	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:69,108:0.61:177
chr19	55527276	rs1654484	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	55529836	rs1654415	C	T	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	55529933	rs1671192	A	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.94;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	55529933	.	ATTA	GTTA,GTTG	528	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.49;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=27;MQ=60.0;NF=32,22;NR=18,13;PP=163,528;QD=3.95542425094;SC=CGGTGAAGTGATTAAAAGCCT;SbPval=0.52;Source=Platypus;TC=51;TCF=33;TCR=18;TR=50,35;WE=55529944;WS=55529923;set=Platypus	GT:AF:DP	0/1:0.98:51
chr19	55529936	rs2304168	A	G	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.110;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:22,49:0.69:71
chr19	55530035	rs1654416	C	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	55536595	rs1613662	G	A	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	55538980	rs1654425	T	C	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr19	55539049	rs5030705	C	T	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:90,144:0.62:234
chr19	55539061	rs892089	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	55539072	rs892090	T	G	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	55543823	rs1671204	T	C	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:121,68:0.36:189
chr19	55543835	rs1671205	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:137,81:0.37:218
chr19	55543985	rs1671206	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:188,85:0.31:273
chr19	55544017	rs1654429	A	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:103,43:0.29:146
chr19	55559644	.	C	T	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.320;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:303,115:0.28:418
chr19	55559740	rs1059211	G	A	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:108,220:0.67:328
chr19	55570574	rs1654447	A	G	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	55574403	rs1654455	C	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.505;QD=5.53;ReadPosRankSum=0.795;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr19	55574412	rs1654456	G	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	55574429	rs113253419	A	AGGCGTCC	1140.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr19	55574468	rs1654458	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=0.818;QD=1.77;ReadPosRankSum=-1.326;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr19	55574512	rs3816043	G	A	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=-0.912;QD=18.60;ReadPosRankSum=0.000;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:12,51:0.81:63
chr19	55587648	rs372742476	TG	T	3132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=5.425;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.253;QD=22.70;ReadPosRankSum=0.594;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:61,77:0.56:138
chr19	55587658	rs62124197	G	A	3761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.204;QD=23.37;ReadPosRankSum=-0.840;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:68,93:0.58:161
chr19	55587668	rs61448344	C	T	3779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=8.699;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.279;QD=20.32;ReadPosRankSum=0.497;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:84,102:0.55:186
chr19	55587822	rs12609976	G	A	9769.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:263,468:0.64:731
chr19	55589591	rs10412296	T	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	55589619	.	TGCTGGGGGTCTGGACTCCTGGGTCAGAGGGAAGAGGG	T	448	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=37;MMLQ=19;MQ=56.17;NF=0;NR=11;PP=448;QD=44.6363636364;SC=AGGGAAGAGGTGCTGGGGGTC;SbPval=1.0;Source=Platypus;TC=30;TCF=1;TCR=29;TR=11;WE=55589663;WS=55589609;set=Platypus	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	55589628	rs12984365	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr19	55591392	rs56378581	C	T	4854.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:115,226:0.66:341
chr19	55591721	rs79764780	G	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	55593417	rs17700138	C	T	18794.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:2,720:1.00:722
chr19	55594996	rs1628576	C	G	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	55598724	rs1054940	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	55603388	rs10410929	T	C	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	55603909	rs74838764	G	A	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr19	55605704	rs3803899	AC	CT	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;JOINED;set=Intersection	GT:AD:AF:DP	0/1:86,145:0.63:231
chr19	55610066	rs55805974	CG	C	4268.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	55623806	rs604216	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr19	55644325	rs890868	A	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	55660499	rs28362592	A	G	4452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=1013;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-2.174;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:705,288:0.29:993
chr19	55660537	rs9636153	T	C	18401.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:1,716:1.00:717
chr19	55665584	rs7252610	A	C	4720.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=3.127;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-0.249;SOR=0.325;set=HC	GT:AD:AF:DP	1/1:1,188:0.99:189
chr19	55671103	.	G	A	674.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:66,35:0.35:101
chr19	55671337	rs890872	C	T	5503.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	55672967	rs12104158	G	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr19	55677523	rs3848619	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr19	55690751	rs11672000	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	55693286	rs45607834	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:143,58:0.29:201
chr19	55697279	rs61734259	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:225,120:0.35:345
chr19	55697752	rs148069644	AG	A	3735.73	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:302,165:0.35:467
chr19	55697766	rs77296713	T	A	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:344,184:0.35:528
chr19	55697795	rs111326663	G	C	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:418,216:0.34:634
chr19	55697889	rs1136578	G	A	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:307,156:0.34:463
chr19	55698737	.	G	GA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.185;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr19	55699454	rs890870	T	C	9046.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	55699575	rs3803905	T	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:169,101:0.37:270
chr19	55708557	rs2288521	A	G	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,442:1.00:443
chr19	55708573	rs2288520	G	A	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:360,155:0.30:515
chr19	55709928	rs2288519	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr19	55710074	rs16986309	G	A	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:157,274:0.64:431
chr19	55711543	rs17700265	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	55713385	rs73066689	A	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:249,112:0.31:361
chr19	55713535	rs2288515	G	A	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:10,366:0.97:376
chr19	55715309	rs45535035	C	T	10419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.747;QD=11.85;ReadPosRankSum=0.614;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:574,305:0.35:879
chr19	55715319	rs9304763	C	G	10082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.655;QD=12.46;ReadPosRankSum=1.207;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:528,281:0.35:809
chr19	55716742	rs116363585	C	T	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:307,144:0.32:451
chr19	55716800	rs2288516	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:273,111:0.29:384
chr19	55720908	rs3745921	G	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:231,89:0.28:320
chr19	55738425	rs3745919	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.25;ReadPosRankSum=-0.191;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	55738634	rs4644955	T	C	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	55738746	rs4374298	G	A	5661.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:112,266:0.70:378
chr19	55739515	rs4255895	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr19	55739605	rs4606850	C	T	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,82:0.70:117
chr19	55739813	rs10419308	G	A	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:107,196:0.65:303
chr19	55741961	rs28678477	G	C	2289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.735;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:74,111:0.60:185
chr19	55751123	rs8104509	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	55756980	rs3745920	A	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr19	55758628	rs7258327	C	T	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	55776823	rs67351527	G	A	13035.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	55777143	rs62126349	T	C	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	55795758	rs201695409	A	AC	475.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.59;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	55798565	rs11878562	C	T	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:461,242:0.34:703
chr19	55800789	rs62126358	C	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	55813414	rs73605125	A	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:146,74:0.34:220
chr19	55815894	rs1172820	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:87,33:0.28:120
chr19	55816677	rs61447045	TC	AT	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;JOINED;set=Intersection	GT:AD:AF:DP	0/1:105,45:0.30:150
chr19	55820142	rs61074752	C	G	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.750;QD=8.94;ReadPosRankSum=-0.088;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:96,52:0.35:148
chr19	55820158	.	G	C	908.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr19	55824332	rs7246479	T	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:221,156:0.41:377
chr19	55854313	rs2384685	G	A	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	55856445	.	G	A	3070.77	.	AC=1;AF=0.500;AN=2;DP=223;set=Intersection	GT:AD:AF:DP	0/1:72,145:0.67:217
chr19	55857777	rs45480394	G	T	8232.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr19	55858077	rs184206118	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr19	55869419	rs11418715	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-1.193;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr19	55869879	rs67168196	GGCTCCTTCATCTCGCCCCATGGCT	G	3205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=4.045;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:379,104:0.22:483
chr19	55869892	rs28420516	C	T	13471.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=4.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=-3.236;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:121,329:0.73:450
chr19	55869903	rs28712579	T	C	14135.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:121,369:0.75:490
chr19	55870104	rs12974819	G	C	10116.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	55870289	rs12974907	C	T	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:418,209:0.33:627
chr19	55870351	rs12976922	T	C	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:338,138:0.29:476
chr19	55870600	rs12460416	C	G	10215.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	55871019	rs12609732	A	G	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	55872191	rs897799	G	A	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=2.093;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:186,87:0.32:273
chr19	55872397	rs2124918	A	G	11600.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr19	55872566	rs2124919	A	G	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	55872864	rs11673515	G	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.653;QD=4.61;ReadPosRankSum=0.026;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:108,44:0.29:152
chr19	55872955	rs11673554	G	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	55873642	rs4252574	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.813;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:74,48:0.39:122
chr19	55877231	rs1042505	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.263;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	55880385	rs62128183	G	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr19	55888503	rs146943389	C	CG	1596.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr19	55888518	.	T	TCCTGGGTCTGAGGGAGGAGGGCTGGGCCTGGACA	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.681;QD=9.55;ReadPosRankSum=2.549;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:67,23:0.26:90
chr19	55888536	.	AG	A	420	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=6;HapScore=1;MGOF=36;MMLQ=28;MQ=58.24;NF=2;NR=23;PP=420;QD=17.88;SC=CTGAGGGAGGAGGGGCTGGGG;SbPval=0.75;Source=Platypus;TC=37;TCF=4;TCR=33;TR=25;WE=55888551;WS=55888526;set=Platypus	GT:AD:AF:DP	1/0:12,25:0.68:37
chr19	55888542	.	TGG	T	416	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=5;HapScore=1;MGOF=36;MMLQ=27;MQ=58.04;NF=2;NR=20;PP=416;QD=20.3181818182;SC=GAGGAGGGGCTGGGGGCCTGG;SbPval=0.75;Source=Platypus;TC=33;TCF=4;TCR=29;TR=22;WE=55888551;WS=55888526;set=Platypus	GT:AD:AF:DP	1/0:11,22:0.67:33
chr19	55895066	rs116658617	C	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=2.285;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr19	55895588	rs1870074	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr19	55898120	rs57266467	A	AT	1314.73	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:176,85:0.33:261
chr19	55899481	rs10410269	C	T	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.014;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:159,55:0.26:214
chr19	55899549	rs10411984	T	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:115,39:0.25:154
chr19	55899602	rs56312243	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,61:0.73:83
chr19	55902909	rs10425362	C	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.781;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr19	55902941	rs45448592	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:29,76:0.72:105
chr19	55903128	rs202235347	C	CTA	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.829;QD=8.12;ReadPosRankSum=1.204;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr19	55903158	rs10653185	C	CAG	1283.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=42.79;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	55912946	rs61748180	T	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	55913038	rs7608	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	55913286	rs11393810	T	TC	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	55914429	rs74593881	G	A	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:326,183:0.36:509
chr19	55914444	rs2891577	T	C	5576.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:288,155:0.35:443
chr19	55964720	rs2303089	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:165,79:0.32:244
chr19	55966346	rs2277959	C	T	8983.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr19	55966895	rs35627652	TG	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.865;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr19	55966971	rs12462602	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-2.747;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:107,44:0.29:151
chr19	55992992	rs74442469	C	T	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	0/1:680,333:0.33:1013
chr19	55993260	rs34864744	A	G	11548.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	55993790	rs7254184	A	G	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=5.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-1.187;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:60,83:0.58:143
chr19	55993876	rs10423355	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	55994240	rs12981044	C	T	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:250,135:0.35:385
chr19	55994708	rs114775834	A	G	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:357,160:0.31:517
chr19	55994823	rs115143283	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr19	55996939	rs3745450	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.147;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	55999993	rs4405662	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	56000239	.	A	ATGTGGGAGCACCAAAGCCGTGGTCCCCAGCCCTGACTTCAGGGGCCAGACATCTGCAGCCCCACCCGCCTCAGAGACCTGCGTCTCAGCCAGCCCCTCTGTCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAGGTGTGAGGACCG	184.73	.	AC=1;AF=0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.79;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,0:0:6
chr19	56000429	.	GC	G,GCC	9213.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=257;set=Intersection	GT:AF:DP	1/1:0.93:245
chr19	56000433	.	C	G	9090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=40.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.66;ReadPosRankSum=1.537;SOR=0.011;set=HC	GT:AD:AF:DP	0/1:20,228:0.92:248
chr19	56000440	.	C	G	8900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=39.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.70;ReadPosRankSum=2.497;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:21,209:0.91:230
chr19	56001419	.	CG	C	220	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=7;HapScore=2;MGOF=16;MMLQ=18;MQ=60.0;NF=1;NR=5;PP=220;QD=39.5;SC=CTGCCCCCCCCGAGGGGAGAG;SbPval=0.5;Source=Platypus;TC=9;TCF=1;TCR=8;TR=6;WE=56001427;WS=56001409;set=Platypus	GT:AD:AF:DP	1/0:3,6:0.67:9
chr19	56001802	rs5828624	C	CCCAAGCAA	10858.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.50;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	56001871	rs4274529	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	56002329	rs4801305	C	T	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:75,182:0.71:257
chr19	56004901	rs889090	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	56005289	rs4801309	T	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.289;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:134,45:0.25:179
chr19	56009191	rs34794462	GT	G	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	56009215	rs7254234	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	56011082	rs74258003	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr19	56011569	rs140695868	G	A	7428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.808;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:869,438:0.34:1307
chr19	56011969	rs75997582	C	T	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-1.988;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:265,136:0.34:401
chr19	56012381	rs11084400	T	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:202,84:0.29:286
chr19	56012597	rs11669422	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	56015613	rs10421885	A	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr19	56024519	rs671542	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	56024563	rs514574	G	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	56024599	rs671152	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	56029188	rs77400028	C	G	18292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.572;QD=27.43;ReadPosRankSum=-0.764;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:250,417:0.63:667
chr19	56029191	rs76172483	C	T	18725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.165;QD=26.37;ReadPosRankSum=-2.286;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:252,458:0.65:710
chr19	56029201	rs74585733	C	A	17623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.179;QD=25.03;ReadPosRankSum=-3.466;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:240,464:0.66:704
chr19	56029465	rs4801331	G	A	24093.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=935;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.14;MQRankSum=-0.240;QD=26.10;ReadPosRankSum=-1.288;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,922:1.00:923
chr19	56029519	rs111456686	C	T	22099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=907;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-4.667;QD=26.82;ReadPosRankSum=4.346;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:255,569:0.69:824
chr19	56029523	rs113619253	C	T	27800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DB;DP=919;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-4.884;QD=31.34;ReadPosRankSum=4.121;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:266,621:0.70:887
chr19	56029543	rs114559746	C	T	25634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.257;ClippingRankSum=0.000;DB;DP=969;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-8.093;QD=27.42;ReadPosRankSum=3.469;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:317,618:0.66:935
chr19	56029552	.	G	GACTGCTGACCCCACCACT	13939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DP=964;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.269;QD=20.09;ReadPosRankSum=10.965;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:352,342:0.49:694
chr19	56029559	.	G	GATCCCACCACAACCCCTC	15083.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DP=1468;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-10.474;QD=18.53;ReadPosRankSum=10.707;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:399,415:0.51:814
chr19	56029616	rs150781976	C	CCCA	67143.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=1585;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;MQRankSum=-0.314;QD=44.91;ReadPosRankSum=-1.257;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:2,1493:1.00:1495
chr19	56041046	rs59876483	GC	AA	17225.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	56041255	rs620251	C	G	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	56047448	rs310453	A	G	11009.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-1.481;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:2,429:1.00:431
chr19	56047722	.	T	TGGGGGTCTGGACTCCTGGGTCTGAGGGAGGAGGGGCC	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=0.339;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr19	56052008	rs34837414	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr19	56052337	rs55643341	A	AC	30052.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=1259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.127;QD=25.97;ReadPosRankSum=-0.490;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:4,1153:1.00:1157
chr19	56052770	rs654439	C	T	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	56055436	rs694398	A	G	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:110,140:0.56:250
chr19	56056184	rs491639	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	56089353	rs2292812	C	T	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,123:0.71:173
chr19	56089908	rs113850871	C	CCCG	12460.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	56089923	rs199914858	C	T	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.620;QD=4.19;ReadPosRankSum=-1.013;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:239,94:0.28:333
chr19	56091024	rs141876039	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.847;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	56104136	rs7247236	T	C	1878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.268;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=-0.862;SOR=1.801;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr19	56104524	rs10403432	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr19	56104560	rs10403462	C	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr19	56114045	rs1077806	C	T	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:211,112:0.35:323
chr19	56114237	rs310459	G	A	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	56128243	rs73058308	C	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr19	56134038	rs908668	C	T	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:63,122:0.66:185
chr19	56136059	rs57314044	G	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	56153868	rs310475	G	A	7459.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:179,354:0.66:533
chr19	56154339	rs12981222	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=2.983;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:132,72:0.35:204
chr19	56156447	rs11084406	A	G	7175.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:211,327:0.61:538
chr19	56160399	rs7246799	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	56160697	.	G	A	5719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.639;QD=15.71;ReadPosRankSum=-0.397;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:104,260:0.71:364
chr19	56162776	rs2287791	C	T	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	56163704	rs73062531	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:93,169:0.65:262
chr19	56170751	rs2271757	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr19	56170771	rs537728	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	56171778	rs507498	A	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	56173836	rs371255874	GC	G	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=7.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=2.394;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:73,44:0.38:117
chr19	56174061	.	A	C	522.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr19	56175149	rs310444	G	A	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	56180732	rs681804	T	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	56180968	rs617073	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	56185250	rs664684	G	A	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:121,196:0.62:317
chr19	56200057	rs34046411	C	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr19	56220245	rs2287832	C	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.079;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr19	56220430	.	G	GT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.742;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr19	56220444	rs2287831	T	G	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-2.635;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr19	56220504	rs73062405	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.18;ReadPosRankSum=-0.577;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	56222998	rs28527338	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr19	56223486	rs59900917	G	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	56228399	rs11436483	C	CT	77.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.42;ReadPosRankSum=1.349;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr19	56241265	rs193384	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	56249445	rs755804	A	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr19	56273136	rs59333538	T	C	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.71;QD=25.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	56273155	rs62126990	T	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.47;QD=25.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	56273293	rs2019946	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.90;MQRankSum=1.036;QD=16.58;ReadPosRankSum=-0.549;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	56273868	rs200686834	G	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-5.165;QD=7.02;ReadPosRankSum=-0.894;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr19	56273902	rs2045865	C	A	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-8.541;QD=10.56;ReadPosRankSum=0.263;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:140,62:0.31:202
chr19	56273902	.	CAA	AAC	1967	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=27;MQ=42.94;NF=42;NR=24;PP=1967;QD=30.6131496191;SC=TGTTTGCAGTCAAAGGGCAGA;SbPval=0.55;Source=Platypus;TC=189;TCF=120;TCR=69;TR=66;WE=56273912;WS=56273892;set=Platypus	GT:AD:AF:DP	1/0:123,66:0.35:189
chr19	56273904	rs199794484	A	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-8.700;QD=10.20;ReadPosRankSum=0.879;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:147,62:0.30:209
chr19	56274060	.	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-2.589;QD=1.39;ReadPosRankSum=-1.670;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:203,44:0.18:247
chr19	56274086	rs138079370	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-2.456;QD=4.94;ReadPosRankSum=-1.482;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:79,34:0.30:113
chr19	56274424	rs150161449	C	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=48.86;MQRankSum=-4.171;QD=0.56;ReadPosRankSum=0.210;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:449,74:0.14:523
chr19	56274453	rs75239380	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=48.85;MQRankSum=-4.624;QD=1.33;ReadPosRankSum=-3.226;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:343,71:0.17:414
chr19	56274460	rs200071964	A	G	5567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=4.800;MLEAC=1;MLEAF=0.500;MQ=48.96;MQRankSum=2.275;QD=14.10;ReadPosRankSum=5.393;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:128,267:0.68:395
chr19	56274583	.	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.05;MQRankSum=-2.735;QD=17.24;ReadPosRankSum=-2.785;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr19	56283054	rs201873504	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-5.414;QD=4.32;ReadPosRankSum=-0.463;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr19	56283056	rs200206915	G	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-5.262;QD=3.63;ReadPosRankSum=-0.490;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr19	56283061	rs28568514	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-4.879;QD=3.92;ReadPosRankSum=-0.818;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr19	56283297	rs199759246	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.248;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=41.84;MQRankSum=-0.227;QD=9.25;ReadPosRankSum=1.166;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr19	56284090	rs202217602	G	A	1856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=49.90;MQRankSum=-1.012;QD=9.72;ReadPosRankSum=1.373;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:102,89:0.47:191
chr19	56284396	rs141642534	A	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.18;QD=30.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	56284428	rs150473927	C	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-5.226;QD=3.42;ReadPosRankSum=0.994;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:114,38:0.25:152
chr19	56284457	rs78244980	G	A	2672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.981;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=8.016;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-9.090;QD=9.22;ReadPosRankSum=2.031;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:152,138:0.48:290
chr19	56284507	rs115250131	T	G	6870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-8.649;QD=19.09;ReadPosRankSum=-0.852;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:182,178:0.49:360
chr19	56284511	rs116745378	C	G	6870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-8.649;QD=19.09;ReadPosRankSum=-1.364;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:182,178:0.49:360
chr19	56284529	rs199519773	C	A	6255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=48.50;MQRankSum=-8.880;QD=18.03;ReadPosRankSum=2.183;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:175,172:0.50:347
chr19	56284535	rs144990325	A	G	6126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=48.51;MQRankSum=-8.119;QD=19.45;ReadPosRankSum=3.869;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:161,154:0.49:315
chr19	56284563	rs149452286	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=49.45;MQRankSum=-6.852;QD=2.02;ReadPosRankSum=3.744;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:113,28:0.20:141
chr19	56284582	rs201888659	A	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=51.62;MQRankSum=-5.574;QD=10.74;ReadPosRankSum=1.928;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr19	56284587	rs200252021	C	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=52.39;MQRankSum=-5.496;QD=12.61;ReadPosRankSum=1.017;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr19	56284614	rs199744839	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.540;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=51.01;MQRankSum=3.864;QD=14.14;ReadPosRankSum=0.862;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	56288941	rs17708417	C	T	6706.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:210,322:0.61:532
chr19	56289284	rs56312799	T	TC	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	56297249	rs59238812	C	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr19	56300063	rs79080359	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-0.820;QD=3.12;ReadPosRankSum=1.584;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr19	56307375	rs113613318	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.374;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr19	56307583	rs2616940	A	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	56307723	rs10422937	T	C	135.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	56321295	rs12977654	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:50,99:0.66:149
chr19	56321414	rs299163	C	A	10005.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr19	56329186	rs71182913	GA	G	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.004;QD=5.34;ReadPosRankSum=-0.066;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	56368863	rs11673189	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	56368948	rs435148	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	56369189	rs441827	G	A	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	56369215	rs395503	C	T	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	56369593	rs421810	T	C	9245.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	56372705	rs4801635	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr19	56388262	rs16986758	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	56390130	rs75238720	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr19	56393051	rs302457	T	C	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.885;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:49,69:0.58:118
chr19	56410222	rs302827	C	T	4454.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:142,216:0.60:358
chr19	56410340	rs302828	T	G	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chr19	56413583	rs302835	A	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	56421775	rs11670284	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	56421826	rs12982016	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	56421861	rs12982043	C	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	56422976	rs1436079	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	56423033	rs4801643	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	56423074	rs977070	C	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	56423254	rs304002	G	A	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr19	56423668	rs304001	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	56423692	rs304000	C	T	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr19	56423728	rs303999	A	G	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr19	56423893	rs303998	G	A	9313.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr19	56424443	rs303997	T	C	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	56435454	rs45565240	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr19	56459614	rs306506	G	C	2439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.768;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:229,135:0.37:364
chr19	56464058	rs306501	C	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr19	56473645	rs11671531	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	56477499	rs73934219	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	56477687	rs306497	A	G	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:133,52:0.28:185
chr19	56477710	rs306496	T	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr19	56487450	rs306482	T	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.596;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr19	56490778	rs306475	C	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr19	56511082	rs35427984	C	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:167,59:0.26:226
chr19	56515334	rs1560691	C	T	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:114,194:0.63:308
chr19	56520091	rs12460573	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	56520129	rs12460633	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr19	56520150	rs12460592	C	G	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-1.075;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:63,80:0.56:143
chr19	56527179	rs149794790	T	TC	5658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.661;QD=22.82;ReadPosRankSum=-0.766;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:74,174:0.70:248
chr19	56527313	rs12610241	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr19	56527345	rs12610242	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr19	56530664	rs306428	A	G	7614.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:72,350:0.83:422
chr19	56531729	.	A	ATTC	650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=11.547;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-8.691;QD=3.29;ReadPosRankSum=1.579;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:169,29:0.15:198
chr19	56538203	rs3103612	C	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	56538520	rs34274738	A	G	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:503,258:0.34:761
chr19	56538976	rs471979	G	C	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:119,240:0.67:359
chr19	56539240	rs397977	C	T	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:100,162:0.62:262
chr19	56549319	.	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.343;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	56552230	rs2569425	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	56561749	rs2574762	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	56564916	rs35553570	G	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	56565164	rs3103057	G	A	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	56599366	rs373134866	GCC	G	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	56599405	rs4077285	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr19	56599437	rs5828672	CTCG	C	2626.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=43.78;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	56600527	rs490015	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	56614652	rs473045	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr19	56661245	rs148474102	G	C	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	56663101	rs143388101	T	C	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-5.752;QD=6.45;ReadPosRankSum=-0.920;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:261,89:0.25:350
chr19	56663145	rs115989382	G	A	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.288;QD=6.72;ReadPosRankSum=-2.024;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:283,108:0.28:391
chr19	56663256	rs502722	A	G	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.246;QD=4.15;ReadPosRankSum=-0.185;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:237,89:0.27:326
chr19	56669758	rs679557	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,40:0.34:116
chr19	56669889	rs61736530	G	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr19	56671272	.	A	ACCCCGGCAG	2411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.541;QD=10.77;ReadPosRankSum=1.161;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:157,67:0.30:224
chr19	56671359	rs145075834	C	G	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.205;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:237,91:0.28:328
chr19	56671656	rs60367783	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.682;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	56671692	rs10407167	G	A	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	56688669	rs4801681	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	56691912	rs274171	G	C	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	56693620	rs3745833	C	G	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	56693643	rs274174	T	C	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	56703248	rs527025	G	A	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:95,182:0.66:277
chr19	56717462	rs150008894	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:103,49:0.32:152
chr19	56719405	rs12979551	A	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,46:0.38:122
chr19	56719822	rs1865101	G	T	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-14.607;QD=2.98;ReadPosRankSum=1.362;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:217,64:0.23:281
chr19	56719853	rs1865102	C	A	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-13.796;QD=2.19;ReadPosRankSum=-0.919;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:205,50:0.20:255
chr19	56758938	rs35779585	G	A	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	56888555	rs12185527	G	A	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,88:0.64:137
chr19	56901293	rs6509995	C	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	56901457	rs61743722	C	T	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.806;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:154,52:0.25:206
chr19	56901950	rs117001351	G	A	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,120:0.67:179
chr19	56904509	rs11439847	T	TA	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.174;SOR=2.211;set=HC	GT:AD:AF:DP	0/1:27,53:0.66:80
chr19	56918560	rs4801159	T	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	56918574	rs2288862	T	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	56918598	rs2288863	T	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	56935527	rs3810340	A	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr19	56952615	rs61740673	A	G	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.005;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:321,141:0.31:462
chr19	56953585	rs3760849	T	C	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:104,224:0.68:328
chr19	56953863	rs8107758	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	56961144	rs35614616	T	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	56969332	rs3745826	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-1.718;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	56978298	rs61635147	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.118;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr19	56978525	rs11881919	T	G	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-1.872;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:156,99:0.39:255
chr19	56981382	rs3760848	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr19	57022869	rs73629909	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-2.405;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:135,49:0.27:184
chr19	57023025	rs67525856	CTT	C	8600.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	57027606	rs10419939	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	57035672	rs142277230	C	CT	916.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr19	57036222	rs73629951	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:129,78:0.38:207
chr19	57036653	rs3752176	G	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	57036678	rs3752177	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	57050721	rs78346163	G	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	57051046	.	G	A	2025.77	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:35,91:0.72:126
chr19	57058998	rs34136271	C	G	14118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=1012;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=2.104;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:344,664:0.66:1008
chr19	57060573	rs2074941	C	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	57062073	rs379214	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr19	57088850	rs3752180	T	C	8295.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	57089050	rs4801177	C	T	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr19	57089562	rs144360515	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:139,80:0.37:219
chr19	57089722	rs35077804	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr19	57132734	rs10405299	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.103;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr19	57132879	rs79950845	G	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:215,80:0.27:295
chr19	57175121	rs115625349	G	A	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:395,175:0.31:570
chr19	57175484	rs7250003	A	G	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:280,207:0.43:487
chr19	57176198	rs8108756	T	G	3302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.532;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:461,202:0.30:663
chr19	57176304	rs12460400	T	G	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:325,149:0.31:474
chr19	57176482	rs12462469	C	T	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.488;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:337,140:0.29:477
chr19	57176820	rs12462993	C	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr19	57176838	rs12462995	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	57286222	rs10422475	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:192,92:0.32:284
chr19	57293394	rs2286751	A	G	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	57325109	rs34876452	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr19	57326970	rs35851866	T	C	5701.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:140,264:0.65:404
chr19	57327503	rs33931963	A	G	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:120,213:0.64:333
chr19	57327939	rs36016896	T	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:211,86:0.29:297
chr19	57335179	rs1860566	T	C	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	57641146	rs1027392	A	G	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	57642098	rs3764574	G	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	57642782	rs9973206	C	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	57646570	rs4801433	T	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	57647015	rs7251328	A	G	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	57647236	rs7252632	T	C	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	57648277	rs4801200	A	T	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	57648433	rs2370135	T	C	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	57653864	rs11084488	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	57654065	rs58537382	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	57654104	rs59976893	T	C	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	57654217	rs10426157	T	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	57665750	rs8108591	T	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr19	57665935	rs201840017	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.697;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	57666840	rs12459119	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	57703209	rs2302059	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	57703369	rs7250511	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.484;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:188,65:0.26:253
chr19	57723007	rs2074858	G	C	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.459;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:115,47:0.29:162
chr19	57723013	rs917340	G	A	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.175;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:112,48:0.30:160
chr19	57723407	rs189907852	C	G	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:76,121:0.61:197
chr19	57742472	rs11084490	G	C	11621.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	57742489	rs58264281	C	T	9455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.601;QD=26.79;ReadPosRankSum=1.675;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:119,234:0.66:353
chr19	57742493	rs142269286	AGGACGAGCAGGATT	A	9505.73	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:152,238:0.61:390
chr19	57742703	rs758097	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:30,69:0.70:99
chr19	57743039	rs758098	T	C	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.53;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	57743067	rs2361127	C	G	6653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.683;QD=13.95;ReadPosRankSum=-0.390;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:153,324:0.68:477
chr19	57743334	rs758099	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	57743766	rs2074859	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	57752326	rs8111661	C	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr19	57755508	rs8109659	C	T	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:333,169:0.34:502
chr19	57755567	.	C	CT	280.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=16.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-0.175;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr19	57760018	rs2014572	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:62,21:0.25:83
chr19	57760057	rs3746231	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr19	57760216	rs1019071	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,45:0.35:130
chr19	57760289	rs73629343	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	57764770	rs10421632	G	A	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:74,66:0.47:140
chr19	57765432	rs8100154	A	G	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:263,134:0.34:397
chr19	57796192	rs117683431	T	C	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.480;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.496;QD=17.57;ReadPosRankSum=0.977;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:21,49:0.70:70
chr19	57802024	rs45619736	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	57802806	rs2041109	C	T	5398.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:101,143:0.59:244
chr19	57802824	rs2041110	G	A	5371.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:103,143:0.58:246
chr19	57832089	rs4801461	G	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	57832257	rs4801462	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:60,114:0.66:174
chr19	57835252	rs4801216	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	57835279	rs4801467	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr19	57837926	rs8110400	C	A	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	57838018	rs6510057	C	G	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	57839150	rs8100491	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	57839567	rs1968090	T	A	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr19	57840547	rs10410649	A	G	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:188,73:0.28:261
chr19	57868336	rs862709	A	G	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr19	57876340	.	G	C	6254.77	.	AC=1;AF=0.500;AN=2;DP=450;set=Intersection	GT:AD:AF:DP	0/1:146,295:0.67:441
chr19	57890000	rs2361119	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:162,60:0.27:222
chr19	57901548	rs12460423	G	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:108,64:0.37:172
chr19	57909872	rs4801478	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:162,66:0.29:228
chr19	57922664	rs4801480	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr19	57922857	.	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DP=255;set=Intersection	GT:AD:AF:DP	0/1:161,83:0.34:244
chr19	57929213	.	C	CA	114.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=7.186;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.516;QD=5.46;ReadPosRankSum=1.428;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	57931553	rs10417533	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:102,49:0.32:151
chr19	57946924	rs56241253	G	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr19	57954628	rs7249430	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:132,60:0.31:192
chr19	57955244	rs12986235	A	G	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:48,96:0.67:144
chr19	57956828	rs7246856	T	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr19	57967049	rs61744949	G	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:114,44:0.28:158
chr19	57967133	rs28649880	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:151,73:0.33:224
chr19	57983457	rs10153521	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:86,23:0.21:109
chr19	57984918	rs2074058	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.081;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:165,48:0.23:213
chr19	57985460	rs2074059	T	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.244;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:167,65:0.28:232
chr19	57985566	rs2074060	G	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:138,61:0.31:199
chr19	57985949	rs35044633	GT	G	3135.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:71,102:0.59:173
chr19	57986184	rs2285607	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:147,72:0.33:219
chr19	57987905	rs2067055	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr19	57988666	rs34678661	A	AGCC	948.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:138,58:0.30:196
chr19	57999182	rs8113039	A	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:224,100:0.31:324
chr19	58001512	rs11672136	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:100,41:0.29:141
chr19	58002819	rs6510085	T	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:118,41:0.26:159
chr19	58003359	rs117470965	T	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	58003488	rs2074070	A	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.199;MLEAC=1;MLEAF=0.500;MQ=54.65;MQRankSum=-4.370;QD=4.59;ReadPosRankSum=-0.446;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:114,49:0.30:163
chr19	58003580	rs2074071	A	G	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:294,138:0.32:432
chr19	58003613	rs2074072	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:241,124:0.34:365
chr19	58003728	rs2074073	G	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:241,107:0.31:348
chr19	58003873	rs2074074	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:104,47:0.31:151
chr19	58004158	rs2074075	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,33:0.30:111
chr19	58004346	rs2074076	G	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr19	58004931	rs2074077	A	G	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:278,102:0.27:380
chr19	58015981	rs2074061	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,79:0.72:110
chr19	58016289	rs2074062	G	T	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=17.760;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-6.857;QD=7.91;ReadPosRankSum=0.846;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:92,67:0.42:159
chr19	58016329	rs142797348	T	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=34.455;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-8.601;QD=2.84;ReadPosRankSum=-2.990;SOR=2.554;set=HC	GT:AD:AF:DP	0/1:119,34:0.22:153
chr19	58016474	rs150811873	T	C	4314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=7.236;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-7.158;QD=12.69;ReadPosRankSum=-0.666;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:193,147:0.43:340
chr19	58016479	rs148826783	T	A	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-4.432;QD=2.86;ReadPosRankSum=0.371;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:267,81:0.23:348
chr19	58017603	rs2012431	C	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.956;QD=24.34;ReadPosRankSum=1.635;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	58017603	.	CTA	TTG	87	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=20;MQ=60.54;NF=5;NR=1;PP=87;QD=23.411312477;SC=CCACCAAGCGCTAGCCCCCTC;SbPval=0.69;Source=Platypus;TC=11;TCF=9;TCR=2;TR=6;WE=58017613;WS=58017601;set=Platypus	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	58017605	rs2012426	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.873;QD=21.78;ReadPosRankSum=0.727;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	58017635	rs756980	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	58017659	rs57412218	C	CAT	1126.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	58017753	rs61731281	CA	AG	4735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.313;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.02;ReadPosRankSum=0.002;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:52,117:0.69:169
chr19	58017758	rs55823456	G	C	4690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.59;ReadPosRankSum=1.103;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:55,115:0.68:170
chr19	58018618	rs2074064	A	G	7773.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:153,353:0.70:506
chr19	58018848	rs2066936	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:68,24:0.26:92
chr19	58019762	rs66526919	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr19	58019786	rs67448172	C	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr19	58019892	rs67054060	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr19	58024252	rs7254394	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	58024328	rs7254526	T	C	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.813;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:32,45:0.58:77
chr19	58024442	rs7253945	G	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.010;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:20,48:0.71:68
chr19	58038964	rs12461014	T	A	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	58058329	rs111521556	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr19	58058536	rs1548476	A	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.991;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:214,84:0.28:298
chr19	58058739	rs10410631	T	C	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:152,76:0.33:228
chr19	58116929	rs9676996	A	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	58117022	rs9676252	T	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-1.551;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:68,39:0.36:107
chr19	58117083	rs9677004	A	G	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	58117114	rs111675758	A	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:85,59:0.41:144
chr19	58117223	rs2360543	T	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	58117413	rs111634535	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr19	58117677	rs9676259	G	A	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:220,129:0.37:349
chr19	58123695	rs3761060	T	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	58125538	rs77837915	C	A	3067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.031;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:77,150:0.66:227
chr19	58125712	rs74745582	C	T	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:49,135:0.73:184
chr19	58125830	rs186592383	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.186;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr19	58131576	rs10414451	T	C	3829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=2.162;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:107,183:0.63:290
chr19	58132106	rs34034473	A	C	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:96,146:0.60:242
chr19	58144715	rs9749449	A	G	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr19	58151286	rs4801508	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.227;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:103,46:0.31:149
chr19	58152020	rs3746221	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	58152033	rs3746220	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	58152361	rs3746219	T	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:221,110:0.33:331
chr19	58152795	rs11879465	C	T	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:193,69:0.26:262
chr19	58152817	rs11880050	G	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:232,77:0.25:309
chr19	58153000	rs3746218	T	C	4381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.236;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:256,127:0.33:383
chr19	58153009	rs3746217	C	T	4450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.650;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:268,133:0.33:401
chr19	58153577	rs3746216	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr19	58231807	rs2239986	A	G	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.135;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:193,84:0.30:277
chr19	58262454	rs11419013	C	CT	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	58265566	rs144336046	G	A	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:345,165:0.32:510
chr19	58288169	rs2285615	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:149,74:0.33:223
chr19	58291228	rs2158013	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr19	58326001	rs2303817	A	G	6011.77	.	AC=1;AF=0.500;AN=2;DB;DP=971;set=Intersection	GT:AD:AF:DP	0/1:617,332:0.35:949
chr19	58331065	rs78506686	C	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.879;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr19	58352522	rs12981244	G	A	4295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.902;ClippingRankSum=0.000;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=0.322;QD=4.33;ReadPosRankSum=1.178;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:713,279:0.28:992
chr19	58361328	rs28374851	G	C	2511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=0.799;QD=10.87;ReadPosRankSum=-0.986;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:159,72:0.31:231
chr19	58361334	rs28577146	G	A	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=1.047;QD=10.66;ReadPosRankSum=-0.006;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:162,73:0.31:235
chr19	58361549	rs58754895	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr19	58370246	rs148965985	T	C	2270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=47.21;MQRankSum=-6.843;QD=10.18;ReadPosRankSum=-0.556;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:115,108:0.48:223
chr19	58370727	rs77825740	T	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=9.041;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-20.080;QD=1.23;ReadPosRankSum=1.776;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:398,79:0.17:477
chr19	58374130	rs7253130	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:98,62:0.39:160
chr19	58385954	.	T	C	623	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=7;HapScore=2;MGOF=9;MMLQ=27;MQ=59.07;NF=28;NR=11;PP=623;QD=16.8659285269;SC=CACATTCATGTTTTTTTTCAG;SbPval=0.47;Source=Platypus;TC=95;TCF=70;TCR=25;TR=39;WE=58385962;WS=58385944;set=Platypus	GT:AD:AF:DP	1/0:56,39:0.41:95
chr19	58386651	rs12610589	C	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-1.250;QD=4.13;ReadPosRankSum=1.744;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr19	58386762	rs7252219	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:134,54:0.29:188
chr19	58419180	rs73068597	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	58419841	rs10414704	G	T	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr19	58419874	rs10415951	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:131,146:0.53:277
chr19	58420152	rs17845779	C	A	8797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-6.971;QD=22.16;ReadPosRankSum=-1.478;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:171,226:0.57:397
chr19	58420162	rs10416584	T	C	9755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-6.174;QD=22.64;ReadPosRankSum=0.701;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:192,239:0.55:431
chr19	58420167	rs17852300	T	C	9812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-5.462;QD=21.81;ReadPosRankSum=0.060;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:192,258:0.57:450
chr19	58420699	rs3745133	C	A	6147.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:288,298:0.51:586
chr19	58421128	rs201944488	C	T	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.88;QD=25.31;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	58427817	rs149076068	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:99,149:0.60:248
chr19	58439159	rs79628444	C	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:173,91:0.34:264
chr19	58446618	rs62126278	G	A	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:95,189:0.67:284
chr19	58453342	rs959231	T	C	5402.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:162,255:0.61:417
chr19	58455381	rs257652	C	T	10925.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	58458711	rs2161616	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr19	58459023	rs16988298	C	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.816;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr19	58472948	rs10588188	GCA	G	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.895;QD=12.57;ReadPosRankSum=-0.343;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr19	58472963	rs8102308	T	G	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-1.721;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr19	58483709	rs3810128	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	58483954	rs11668548	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr19	58485439	rs257676	C	T	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	58485828	rs7249794	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr19	58499683	rs75942843	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr19	58517385	.	T	C	765.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr19	58549366	rs159870	C	G	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	58549593	rs2241406	C	G	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	58570714	rs146738840	A	AGGCCG	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=39.72;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	58570794	rs8110363	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.417;QD=9.38;ReadPosRankSum=-2.083;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	58571615	rs151015554	GGTGCCCGGCCTCTACTC	G	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=4.173;QD=3.22;ReadPosRankSum=-3.770;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr19	58572979	rs1469087	G	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	58578578	rs2229375	C	T	14657.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr19	58579614	rs61732967	A	G	5066.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:129,242:0.65:371
chr19	58579923	rs2229379	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	58598670	rs2287837	C	T	1962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.513;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:187,110:0.37:297
chr19	58598784	rs2260914	A	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.766;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:81,52:0.39:133
chr19	58600048	rs1529329	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr19	58601221	rs2547354	T	C	7428.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:200,357:0.64:557
chr19	58629830	rs8108978	A	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.659;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.465;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr19	58629878	rs8109275	G	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr19	58718360	rs59557917	A	AG	3880.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	58722871	rs114856441	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:274,127:0.32:401
chr19	58757638	rs9941461	T	C	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr19	58757870	rs12972443	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr19	58774071	rs260462	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:146,68:0.32:214
chr19	58790675	rs437229	T	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.290;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:166,75:0.31:241
chr19	58790713	rs374431	G	C	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:82,41:0.33:123
chr19	58791213	rs260500	C	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:64,24:0.27:88
chr19	58791252	rs66668551	TTA	T	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.655;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	58791253	rs141708687	TA	T	248.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=1.181;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	58797344	rs400733	A	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr19	58797583	rs59553565	C	CT	2021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=0.843;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:149,74:0.33:223
chr19	58806083	rs260471	T	C	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.050;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:214,91:0.30:305
chr19	58850341	rs59054150	G	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:447,197:0.31:644
chr19	58850756	rs16988668	G	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:88,34:0.28:122
chr19	58858231	rs3214663	GC	G	2339.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr19	58858614	rs11345647	AG	A	3753.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	58858676	rs1265957	A	G	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	58863161	rs10164322	C	CT	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.000;QD=8.18;ReadPosRankSum=2.378;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	58864479	rs893184	T	C	5758.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:112,256:0.70:368
chr19	58864867	rs2375470	A	G	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:91,169:0.65:260
chr19	58864879	rs3833872	T	TG	3279.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:67,120:0.64:187
chr19	58868301	.	AG	A	2708.73	.	AC=1;AF=0.500;AN=2;DP=348;set=Intersection	GT:AD:AF:DP	0/1:236,103:0.30:339
chr19	58868480	rs12609654	G	T	5783.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:144,268:0.65:412
chr19	58868799	rs201241256	CC	AG	2888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.544;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.247;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:214,85:0.28:299
chr19	58869515	rs6146577	GTCCCC	G	7873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.340;QD=25.00;ReadPosRankSum=3.858;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:117,198:0.63:315
chr19	58870003	rs10692126	T	TGAG	818.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:78,26:0.25:104
chr19	58870087	rs11332731	TG	T	5082.73	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:438,198:0.31:636
chr19	58871130	rs6510138	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	58879965	rs7255489	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	58879976	rs7255596	C	T	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	58880091	rs115715001	G	A	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr19	58898193	rs975947	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr19	58898436	rs731835	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	58904665	rs7245665	A	G	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:55,149:0.73:204
chr19	58907443	rs12611212	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr19	58908150	rs13343526	C	G	12015.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	58908180	rs61741018	G	C	5536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-0.004;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:143,265:0.65:408
chr19	58908185	rs13345602	T	C	15072.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.06;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr19	58908297	rs61743678	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr19	58920104	rs145105239	ACGGGAGTTC	A	790.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr19	58928302	rs10423138	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	58928786	rs7257872	A	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:139,64:0.32:203
chr19	58929052	rs3764535	G	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:154,63:0.29:217
chr19	58929136	rs3764534	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	58945962	rs9941466	C	T	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	58946056	rs1465789	G	A	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	58947089	rs112637525	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.60;ReadPosRankSum=-0.180;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	58948610	rs76156338	A	G	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:92,129:0.58:221
chr19	58951123	rs7259841	T	C	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	58982384	rs10418774	A	G	9838.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr19	58983558	rs55875034	T	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr19	58989424	rs731259	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:163,82:0.33:245
chr19	58989495	rs893185	A	C	14348.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:3,564:0.99:567
chr19	58991900	rs882610	G	A	5217.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:154,241:0.61:395
chr19	58992220	rs3752112	T	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.297;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr19	59010399	rs111249515	T	C	6173.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:111,279:0.72:390
chr19	59010593	rs4801274	A	G	14533.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr19	59023166	rs34415062	G	A	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	59023174	rs35350976	A	G	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	59025685	rs4801602	A	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	59028585	rs11545185	G	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	59056752	rs2305122	G	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.65;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	59058693	rs3816329	G	A	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	59065252	rs180674674	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr19	59067623	rs2305119	C	T	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	59074653	rs4756	T	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	76962	rs6111385	T	C	31476.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=1298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=1.551;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:2,1225:1.00:1227
chr20	207903	rs2298148	T	C	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	208168	rs6110460	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	209851	rs6074833	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	209906	rs11473300	T	TCTC	2130.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	210306	rs1053783	C	G	33489.77	.	AC=2;AF=1.00;AN=2;DB;DP=1293;set=Intersection	GT:AD:AF:DP	1/1:0,1269:1.00:1269
chr20	210539	rs6074846	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	238355	rs73570473	A	G	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr20	238530	rs412143	T	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	239664	rs420525	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	239697	rs399094	G	C	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	251770	rs111925487	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	252084	.	TACACACAC	T,TAC	1193.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=44;set=Intersection	GT:AF:DP	1/2:0.29,0.71:31
chr20	252120	rs76863237	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=40.52;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	256573	rs6075567	A	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	256727	rs3827147	T	A	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=26.12;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	256760	rs56774790	G	GA	2989.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	256763	rs61354763	G	C	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	257320	rs2277779	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	257733	rs2277781	A	G	11662.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr20	257812	rs6046375	T	C	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	258865	rs6046492	A	G	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr20	259717	.	GA	G	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.668;QD=4.99;ReadPosRankSum=-0.399;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr20	259719	.	G	C	98.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.801;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.668;QD=5.49;ReadPosRankSum=-1.154;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr20	259721	.	GA	G	530.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr20	259723	rs181310581	C	G	93.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.668;QD=5.21;ReadPosRankSum=-0.284;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr20	259729	.	G	T,GAGGT	2424.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=60;set=Intersection	GT:AF:DP	1/2:0.20,0.70:20
chr20	259730	.	C	T	2490.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr20	259779	rs138321265	G	T	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:4,221:0.98:225
chr20	259969	rs7271033	G	C	12476.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr20	264764	rs6046931	C	A	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	270428	rs6035784	C	T	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	271135	rs3215551	G	GC	2677.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	271225	rs3835237	T	TTTA,TTTTA	5294.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.99;QD=40.73;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:5,64,61:0.49,0.47:130
chr20	271336	rs77667040	A	G	13361.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.55;QD=43.10;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr20	271341	rs79138518	A	G	13075.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=45.24;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr20	278515	rs2223665	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	278687	rs5839847	CCGG	C	4196.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	334317	rs5839855	TC	T	33918.73	.	AC=2;AF=1.00;AN=2;DB;DP=1160;set=Intersection	GT:AD:AF:DP	1/1:1,1095:1.00:1096
chr20	368905	rs2295490	A	G	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr20	371972	rs6051637	T	C	10170.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr20	377226	rs6115830	C	T	17632.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr20	397928	rs6115906	C	T	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	398039	rs67707964	TTG	T	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr20	400504	rs67470622	AGTGACCCTGCACCTGGCT	A	2085.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	402710	rs2057251	A	G	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	409870	rs146561173	AT	A	115.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.791;QD=7.23;ReadPosRankSum=0.497;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr20	411242	rs11906780	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	425606	rs2273465	C	A	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	428767	rs6139203	A	C	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr20	442937	rs708978	C	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	459409	.	CA	C	86.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.054;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr20	485995	.	GTT	G	93.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=1.668;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr20	590456	rs282164	A	G	7679.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=25.26;ReadPosRankSum=-0.425;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,303:1.00:304
chr20	590542	rs2754502	CG	GC	17201.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.03;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr20	590900	rs183989	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	628654	rs76240668	G	A	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	628890	rs6053666	T	C	22172.77	.	AC=2;AF=1.00;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	1/1:0,862:1.00:862
chr20	629649	rs41282134	T	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr20	741847	rs910857	A	G	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	742239	rs6054589	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	744510	rs3746806	G	A	10225.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr20	744570	rs6054605	G	A	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr20	744662	rs3833341	A	ACAGGTCAAT	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	745898	rs6054614	T	C	9494.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr20	825678	rs538094	T	C	25898.77	.	AC=2;AF=1.00;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	1/1:1,949:1.00:950
chr20	853502	rs11907018	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	854807	rs2297122	C	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	854940	rs944110	T	C	10491.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr20	855113	rs73078132	G	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	858769	rs873147	C	T	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr20	860426	rs61737018	G	A	17530.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr20	860596	rs1329814	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	947909	rs6140807	C	T	19954.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	1/1:1,756:1.00:757
chr20	1099329	rs2072962	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	1099523	rs1803415	T	G	27213.77	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:4,1056:1.00:1060
chr20	1099666	rs2072961	G	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	1108262	rs6040024	C	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr20	1115529	rs4813939	A	G	11201.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr20	1210647	rs450739	T	C	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	1214814	rs203534	A	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	1285933	rs3795139	G	A	10115.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr20	1286677	rs61747127	G	A	6653.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr20	1286711	rs4813082	T	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	1291076	rs1048628	G	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	1292964	rs4814110	T	C	16898.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:2,646:1.00:648
chr20	1293008	rs2273958	C	T	29512.77	.	AC=2;AF=1.00;AN=2;DB;DP=1147;set=Intersection	GT:AD:AF:DP	1/1:0,1130:1.00:1130
chr20	1298794	rs6078610	G	A	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	1299014	rs61735059	A	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	1300395	rs6041382	G	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	1350672	rs6041749	T	C	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	1350709	rs8392	T	C	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	1356261	rs6074549	G	C	19933.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr20	1424303	rs6891	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	1426393	rs9575	C	T	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	1435905	rs6042377	T	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	1457045	rs6042499	T	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	1458876	rs6042506	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	1459060	rs6042507	T	G	8886.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	1459246	rs6033876	C	T	11105.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	1471903	rs958839	A	G	12905.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr20	1520883	rs2256520	T	C	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	1532595	rs2249317	T	C	15833.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr20	1546742	rs2243602	T	A	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	1546906	rs11907593	C	T	14896.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr20	1546911	rs2243603	C	G	14667.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr20	1551485	rs2254458	C	T	14001.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr20	1552430	rs2253427	T	C	26488.77	.	AC=2;AF=1.00;AN=2;DB;DP=1017;set=Intersection	GT:AD:AF:DP	1/1:0,1011:1.00:1011
chr20	1610939	rs3746722	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	1615883	rs62186949	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	1615959	rs9305125	T	C	11092.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr20	1616137	rs6034239	G	A	17737.77	.	AC=2;AF=1.00;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr20	1616206	rs6043409	A	G	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	1902925	rs67908870	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	1908605	rs113383779	C	T	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	1908700	rs112362313	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	2082732	rs6112857	C	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	2124604	.	C	CT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.048;QD=0.82;ReadPosRankSum=0.076;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:205,48:0.19:253
chr20	2291722	rs6048066	A	C	11929.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr20	2321363	rs214831	A	G	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	2321665	rs214832	T	C	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	2361684	rs2422753	C	T	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	2361794	rs16984767	G	A	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	2375262	rs2076405	A	G	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	2376080	rs73894929	C	A	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr20	2376126	rs73894931	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr20	2398017	rs2295077	G	A	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr20	2411731	rs71329366	CAG	C	5059.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	2413125	rs2076653	CC	TT	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	2413320	rs2076652	T	C	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr20	2442273	rs6049216	C	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	2451503	rs4815262	G	A	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr20	2474081	rs4815270	T	C	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	2517377	rs6036860	A	G	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	2517432	rs6036861	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	2517448	rs6036862	G	A	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	2517825	rs6114817	T	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	2518151	rs6049838	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr20	2542669	rs7270277	C	T	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr20	2552805	rs1883981	T	A	3017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-1.631;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:38,187:0.83:225
chr20	2552926	rs1883980	T	C	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr20	2559778	rs6083735	G	C	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	2572816	rs6050433	T	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	2593006	rs1015159	A	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	2596969	rs4621228	T	A	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	2597073	rs4544508	T	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.36;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	2597978	rs4815428	G	A	21272.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:2,791:1.00:793
chr20	2598019	rs6083866	C	T	14623.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr20	2616556	rs910271	T	C	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	2616679	rs2422808	C	G	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr20	2617993	rs6083914	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	2618033	rs59750367	C	CAAAA,CAAAAA	3606.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.197;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=0.000;QD=35.36;ReadPosRankSum=-0.786;SOR=1.580;set=HC	GT:AD:AF:DP	1/2:7,29,66:0.28,0.65:102
chr20	2618094	rs6037181	G	A	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	2618140	rs6083915	T	C	10386.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr20	2618308	rs6050771	C	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	2621998	rs6050798	T	C	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr20	2633234	rs6115305	T	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	2633244	rs4815467	A	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=40.66;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	2633296	rs6138678	G	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.75;QD=24.76;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	2633378	.	A	AGAGCCTGGGCCTGGGCCTGGGCCT	3203.73	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	2633404	rs6115307	C	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=35.57;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	2633936	rs2073194	T	C	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	2644407	rs2073193	C	G	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr20	2673644	.	GGGCGCT	G	314.75	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	2777459	rs1985525	T	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	2777828	rs742707	G	T	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr20	2778075	rs127076	T	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	2779257	rs215541	G	C	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	2796485	rs3830832	C	CCTTTT	11987.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.175;QD=25.61;ReadPosRankSum=0.092;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:2,466:1.00:468
chr20	2797015	rs215561	G	A	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr20	2797137	rs11469869	GCC	G,GC	5470.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.732;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.464;QD=22.70;ReadPosRankSum=1.731;SOR=0.314;set=HC	GT:AD:AF:DP	1/2:15,50,176:0.21,0.73:241
chr20	3147024	rs7260750	G	A	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	3147762	rs6051612	A	G	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	3185123	rs11697186	A	T	8805.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	3193842	rs1127354	C	A	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr20	3193978	rs8362	G	A	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	3199373	rs2422861	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr20	3203950	rs2236206	T	A	9093.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	3204084	rs9101	G	A	10277.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr20	3209371	rs2281575	G	A	16536.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr20	3210692	rs6139039	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	3211064	rs3810561	A	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	3214020	rs2144771	G	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	3214581	rs3803956	C	T	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	3215046	rs6139040	C	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	3218634	rs3810562	G	C	7709.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr20	3219894	rs6107260	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	3233142	rs6037516	C	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	3236015	rs1569942	A	G	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	3240723	rs6051685	C	T	4224.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.128;MLEAC=2;MLEAF=1.000;MQ=59.03;MQRankSum=-0.258;QD=25.92;ReadPosRankSum=1.315;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:1,162:0.99:163
chr20	3245006	rs6515783	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	3245276	rs6051694	T	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	3251248	rs6037526	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	3262493	rs6051708	T	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	3277602	rs2236104	C	A	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr20	3285140	rs2422864	T	C	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	3296279	rs2236115	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	3298881	rs59462924	CAA	C	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.90;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr20	3299054	rs6139071	T	C	19286.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:1,760:1.00:761
chr20	3311438	rs34084211	C	CTT	817.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=1.117;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:6,36:0.86:42
chr20	3324487	rs10582105	CGTGT	C	2610.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr20	3329062	rs6139087	TG	CA	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	3362033	rs6051818	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	3541633	rs235577	A	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	3553299	rs11475024	TA	T	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.506;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr20	3564672	rs235540	C	T	7970.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	3564772	rs170976	T	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	3565546	rs235538	C	G	11166.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr20	3575248	rs235532	G	C	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	3605059	rs235519	A	G	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr20	3649713	rs628965	A	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	3649721	rs628977	T	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	3650066	rs630712	C	A	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	3657803	rs568251	AT	GA	19952.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr20	3670061	rs3746634	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	3671891	rs3859664	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	3672836	rs910653	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	3673815	rs2474436	A	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	3674821	rs59383643	G	GAC,GACAC	2098.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=-0.428;QD=23.58;ReadPosRankSum=0.602;SOR=1.157;set=HC	GT:AD:AF:DP	1/2:14,32,43:0.36,0.48:89
chr20	3675333	rs3746638	G	A	7180.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	3675498	rs709012	T	G	15318.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:1,600:1.00:601
chr20	3677095	rs11471725	T	TGCTG	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	3677357	rs501538	T	C	14525.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr20	3677736	rs673114	T	G	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	3682011	rs1018493	G	A	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	3682149	rs13037869	G	A	15343.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr20	3682275	rs1018492	A	G	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	3684022	rs611847	A	G	14570.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr20	3684729	rs625372	T	C	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr20	3686436	rs6037651	C	T	11076.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr20	3723091	rs611073	A	G	8447.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr20	3731622	rs2474437	C	T	14996.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr20	3732633	rs541760	C	T	27591.77	.	AC=2;AF=1.00;AN=2;DB;DP=1066;set=Intersection	GT:AD:AF:DP	1/1:0,1040:1.00:1040
chr20	3740620	rs11470482	GCA	G	15216.73	.	AC=2;AF=1.00;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	1/1:27,631:0.96:658
chr20	3759200	rs2281477	G	A	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	3759528	rs2281478	C	T	20901.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,817:1.00:817
chr20	3760548	rs6116037	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	3767121	.	TGGGGCCCATCCCGGCGCGCCCCCCGCCCCGGGGCCCGGCGCCGCCGCCGCCGCCCCGGGGCGG	T	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=21.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.742;SOR=3.386;set=HC	GT:AD:AF:DP	0/1:148,19:0.11:167
chr20	3778433	rs3746644	T	C	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	3778962	.	GTTTT	G	809.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.39;ReadPosRankSum=0.145;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr20	3780857	rs140901750	T	TGGACTGGAGACCTGGTGCTAG	4247.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	3783649	rs592687	G	C	18576.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr20	3784110	rs1056720	C	T	28506.77	.	AC=2;AF=1.00;AN=2;DB;DP=1107;set=Intersection	GT:AD:AF:DP	1/1:0,1099:1.00:1099
chr20	3844929	rs45437096	C	T	18981.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr20	3846843	rs3746660	C	T	12683.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,488:1.00:489
chr20	3870124	rs3737084	G	C	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	3954789	rs2143236	T	A	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	4053254	rs6139288	A	G	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr20	4053478	rs71331091	T	TAC	60.06	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.02;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	4055656	rs6139292	C	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	4155935	rs2295484	G	T	16341.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:2,641:1.00:643
chr20	4157853	rs1535225	G	A	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	4158164	rs11552911	C	A	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.155;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr20	4202802	rs835873	A	G	9512.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr20	4228735	rs35105284	C	T	21829.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,810:1.00:810
chr20	4764748	rs73058454	G	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	4768475	rs111533115	A	AAGGGACT	2374.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	4770440	rs2422992	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	4781496	rs3818277	T	C	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	4837929	.	TAC	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=-0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.06;ReadPosRankSum=0.542;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr20	4880132	rs71993570	AGCTCAATGCCTTCTGC	A	2348.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	4880308	rs1776964	G	A	8218.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr20	5149064	rs6116671	A	C	322.84	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;MQRankSum=-0.246;QD=12.91;ReadPosRankSum=-1.804;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr20	5149065	rs6116672	A	C	322.84	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;MQRankSum=-0.241;QD=12.42;ReadPosRankSum=-2.009;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr20	5149085	rs11287231	GA	G	544.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.336;QD=12.67;ReadPosRankSum=-0.843;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:6,37:0.86:43
chr20	5159344	rs2295508	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	5169877	rs6038087	A	G	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	5261029	rs6038114	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	5261132	rs6038115	G	A	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr20	5261206	rs4553880	T	C	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	5282619	rs3746681	A	T	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	5283256	rs3746682	C	G	12411.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr20	5283376	rs3746684	G	A	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	5454400	rs606389	A	T	11537.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr20	5454686	rs1060236	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.22;QD=26.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	5539564	rs41282126	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	5539599	rs73596113	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	5547951	rs3736765	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	5548208	rs11475275	TA	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.113;QD=9.90;ReadPosRankSum=0.057;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr20	5551034	rs1056244	G	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	5556686	.	TACACAC	TAC,T	1051.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:26
chr20	5556752	rs11475607	TA	T	452.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.174;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.067;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr20	5559292	rs6038208	T	C	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr20	5559441	rs6053512	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	5560875	.	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.777;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr20	5564774	rs6053517	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	5574134	rs1983694	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	5843812	rs1699233	T	C	8295.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr20	5903141	rs236150	G	C	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr20	5903517	rs236151	A	G	12514.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:9,506:0.98:515
chr20	5903848	rs236152	C	G	11321.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr20	5903894	rs236153	A	G	9654.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr20	5905550	rs236155	G	A	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	5919102	rs61554382	C	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	5922358	rs236175	G	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	5924781	rs236178	G	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	5935292	rs75208981	G	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	5935385	rs236114	T	C	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr20	5943974	rs35028990	C	T	7896.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr20	5948706	rs236100	A	G	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	5948712	rs236101	C	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	5958372	rs145301253	T	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	5966905	rs114361769	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	5967972	rs34887921	C	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	5975124	rs72259262	GACAC	G	406.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.632;QD=36.98;ReadPosRankSum=1.743;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr20	5975380	rs11422423	T	TA	280.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=1.839;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr20	5987267	rs2294971	A	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	5988095	rs4813786	A	G	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	5988166	rs112241454	G	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	5990726	rs59996436	T	TG	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=1.165;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr20	6011882	rs2423132	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	6011943	rs58014205	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	6017715	rs58630165	A	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	6021877	rs77984191	C	T	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	6022540	rs77510661	T	C	11780.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr20	6032882	rs6053858	C	T	9198.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr20	6033025	rs1884643	T	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	6033140	rs74482940	C	T	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	6064554	rs753929	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	6064635	rs753928	G	A	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr20	6064710	rs753927	A	G	9007.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	6064839	rs2232077	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	6065729	rs2232074	C	T	20189.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=45.37;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr20	6065731	rs2232073	T	C	20189.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=44.18;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr20	6075510	rs2144938	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	6077501	rs16991840	T	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	6093090	rs2326719	G	A	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	6096872	rs75911461	A	T	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	6100002	rs6038363	C	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	6100230	rs2273423	A	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr20	6100241	rs2273422	A	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	6100299	rs3215629	CT	C	239.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	6751034	rs1049007	A	G	31010.77	.	AC=2;AF=1.00;AN=2;DB;DP=1205;set=Intersection	GT:AD:AF:DP	1/1:1,1182:1.00:1183
chr20	6759115	rs235768	A	T	12203.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr20	7866261	rs2272813	G	C	12042.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:2,470:1.00:472
chr20	7875969	rs78959829	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	7887025	rs6055387	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	7921106	.	G	GT	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.184;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:27,57:0.68:84
chr20	7963041	rs2076015	C	T	21940.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,828:1.00:828
chr20	7999537	rs2294247	C	A	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	7999642	rs2294248	G	A	13655.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr20	8626903	rs1018443	C	T	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr20	8637727	rs6140670	G	A	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	8665502	.	G	GA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.792;QD=1.88;ReadPosRankSum=-1.901;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr20	8689441	rs6133609	T	C	7814.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	8705496	rs6056043	A	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	8707900	rs1015171	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	8707927	rs1015170	C	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	8713842	rs993670	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	8719777	rs6039246	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	8731580	rs10653378	C	CTT	1224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.045;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,75:0.77:98
chr20	8737610	rs76115176	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	8741188	rs2294596	A	G	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	8741247	rs3886935	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	8769180	rs2327089	C	T	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	8770108	rs4633993	A	C	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	8770130	rs2327090	A	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	8773096	rs6086599	C	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	8773155	rs6056118	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	8773295	rs6056119	T	C	15256.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr20	8782901	rs6056128	G	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	9346291	rs148574006	T	A	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	9360833	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.537;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr20	9388800	rs3830773	TG	T	1350.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	9389232	rs11470510	GGGTTTGAT	G	3767.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	9401874	.	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	9401928	rs6056608	G	A	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	9401940	rs6056609	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	9402181	.	G	A	1433.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	9417711	rs34678819	C	T	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,289:0.99:291
chr20	9417972	rs6056623	G	A	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	9424904	rs6056629	C	A	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	9438109	rs35285428	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	9438285	rs138911909	G	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	9453554	rs114557080	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	9453567	rs2206389	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	9453901	rs11475002	AT	A	164.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.053;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr20	9495678	.	G	A	6619.77	.	AC=2;AF=1.00;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr20	9496285	.	T	TCC	6351.73	.	AC=2;AF=1.00;AN=2;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	9496716	rs2232264	C	G	6461.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.33;ReadPosRankSum=1.353;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:2,275:0.99:277
chr20	9497057	rs2232267	A	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	9498657	rs143992809	T	TCTGCCAGCAGGAGGGGC	1535.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	9510263	rs2232268	T	A	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	9523379	rs41275620	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	9524992	rs8116720	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	9543622	rs2297345	C	T	8811.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr20	9543681	rs2297346	C	T	10768.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	9543688	rs2297347	T	G	10170.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	9624889	.	G	A	3164.77	.	AC=1;AF=0.500;AN=2;DP=409;set=Intersection	GT:AD:AF:DP	0/1:234,171:0.42:405
chr20	9625003	rs4816157	G	A	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	10019093	rs575534	A	G	12277.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr20	10026108	rs6077636	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	10030931	rs656111	C	A	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	10032641	rs6141103	G	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	10256252	rs362585	G	T	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr20	10258527	rs68021611	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	10277621	rs362998	C	T	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	10279797	rs363004	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	10393145	rs221667	C	G	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	10579205	rs145908671	C	T	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr20	10620386	rs1051419	A	G	11744.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr20	10624502	rs56225585	G	A	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr20	10624924	.	T	TCACACACACACA	2380.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;QD=61.04;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	10633237	rs1131695	G	A	8475.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr20	10633313	rs6040055	T	C	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	10639385	rs2273060	A	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	11790885	rs3036550	C	CTT	1081.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	11791008	rs803665	C	T	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	11791182	rs2423612	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	11830180	rs33956420	CT	C	930.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.621;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.412;QD=17.90;ReadPosRankSum=0.373;SOR=2.196;set=HC	GT:AD:AF:DP	1/1:3,49:0.94:52
chr20	13029764	rs1431433	A	C	13502.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr20	13029790	rs6078899	C	T	11828.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr20	13029862	rs919604	C	T	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	13029920	rs934335	C	G	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	13053018	rs243887	T	G	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	13053035	rs243888	A	G	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr20	13071871	rs243874	C	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	13074235	rs708937	G	A	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr20	13090733	.	A	AT	1569.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.497;QD=17.25;ReadPosRankSum=-0.141;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:9,82:0.90:91
chr20	13260252	rs911642	C	T	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	13595316	rs2295506	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	13597717	rs6033773	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	13605903	rs2070307	A	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	13750448	rs35589194	C	CA	341.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=22.78;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	13755728	.	CAAAA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.633;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr20	13782409	rs1015517	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	13797179	rs34901599	G	A	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr20	13845987	rs761811	C	T	7589.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	13847420	rs660710	A	G	12209.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr20	13868745	rs243910	T	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	14066168	rs35070683	T	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	15948326	.	GAAAAAA	G	799.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.35;ReadPosRankSum=1.735;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr20	15967533	rs6043660	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	15967635	rs6034342	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	16025192	.	CT	C	978.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr20	16025379	rs57199172	C	T	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	16025395	rs73898350	G	C	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	16223865	rs2144897	T	C	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr20	16223922	rs1541065	T	C	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	16224066	rs2144898	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	16351329	rs2144893	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	16352234	rs11399338	C	CA	473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.867;QD=7.90;ReadPosRankSum=-0.174;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr20	16352401	rs8123195	T	C	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	16359356	rs5840714	TA	T	128.94	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr20	16359567	rs6034464	A	G	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr20	16359650	rs8116503	C	T	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr20	16362235	rs4814479	G	A	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	16386981	rs16997573	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	16407960	rs2273425	A	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	16553701	rs6135800	G	C	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	16554067	rs4814510	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	16729138	rs6135876	T	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr20	16729654	rs10627353	A	AAGATG	3246.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=44.48;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	16730464	rs6075100	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	16730464	.	TAT	CAC	787	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=27;MQ=60.0;NF=14;NR=6;PP=787;QD=42.0233937431;SC=TGATTCTCACTATCAGCAAAG;SbPval=0.58;Source=Platypus;TC=20;TCF=14;TCR=6;TR=20;WE=16730474;WS=16730454;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	16730466	rs6131861	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	16730522	rs6135878	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	17389830	rs2217182	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	17389877	rs2859875	C	T	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	17390095	rs2195108	A	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	17409907	rs16999181	C	G	393.96	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr20	17436895	rs2021789	G	A	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.34;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	17445942	rs41276388	C	T	10795.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr20	17462150	rs11907226	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	17474690	rs6105762	T	G	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr20	17474791	rs6080717	G	A	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	17474968	rs6080718	T	C	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	17479730	rs6111549	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	17479763	rs2235585	T	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	17539168	rs6044883	A	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	17597361	rs911348	A	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	17599214	rs2328181	T	C	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	17605240	rs6034867	A	T	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	17610729	rs6044917	T	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	17617531	rs6044923	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	17640009	rs13040917	A	C	7233.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=4.209;MLEAC=2;MLEAF=1.000;MQ=58.88;MQRankSum=-0.277;QD=25.65;ReadPosRankSum=-0.676;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:1,281:1.00:282
chr20	17705664	rs2296905	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	17705677	rs4814640	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	17705849	rs2296907	C	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	17716416	rs1053993	C	G	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	17929772	rs16978610	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	17933511	rs910900	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	17937801	rs3790301	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=24.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	17949425	rs73901137	C	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	18022171	rs1571431	C	T	9616.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr20	18038203	rs73252035	T	C	15647.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr20	18118740	rs1205190	T	G	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr20	18123084	rs78016265	CT	C	511.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr20	18131609	rs79713126	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	18131739	rs149392972	G	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	18142924	rs3748511	G	A	14638.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr20	18143117	rs1205193	T	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	18167977	rs2747404	T	C	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	18286888	rs2328286	G	A	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	18291064	rs2424155	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	18296072	rs1033545	T	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	18361603	rs1883938	T	C	9233.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr20	18432690	rs2424196	T	A	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	18445963	rs6035051	A	G	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	18446050	rs111987137	A	ATGTGCACTTATAGC	2129.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	18448079	rs1474974	C	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	18464101	rs2424213	A	G	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	18470980	rs2424217	A	G	9694.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr20	18477614	rs2247746	A	G	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	18477870	rs2247757	T	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	18505403	rs3762200	G	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	18505563	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=0.182;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:170,34:0.17:204
chr20	18506616	rs911115	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	18511456	rs6081189	A	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.53;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	18511504	rs3762201	T	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	18523864	rs2295557	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	18529233	rs3736775	T	A	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	18535982	rs1555363	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	18548425	rs6075366	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	18549848	rs11475239	CT	C	347.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	18568902	rs6075371	G	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	18568918	rs6075372	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	18576912	rs1884875	C	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	19560555	rs11087288	GA	G	6641.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	19560664	rs3790261	G	A	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	19646436	.	CGTGT	C	660.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=13.087;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.04;ReadPosRankSum=2.161;SOR=1.560;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chr20	19654454	rs1406971	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	19677615	rs113059140	AAGGGAGGGAGGG	A	1600.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.17;QD=42.12;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	19915611	rs374156281	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.513;QD=1.57;ReadPosRankSum=-0.151;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr20	19937447	rs147968123	C	T	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	19941538	rs199562	A	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	19977276	rs6136905	G	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	20018899	rs200012045	C	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=11.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.382;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	20019147	rs7271629	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	20021219	rs7264835	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	20021301	rs3828003	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	20050397	rs200183	G	A	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr20	20055800	rs73291608	G	A	11247.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.45;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr20	20056038	rs11482118	T	TA	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	20123624	rs7265615	G	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	20139951	rs11475376	GC	G	4598.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	20140196	rs2179823	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	20146875	rs6046679	C	T	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	20150182	rs6112802	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.92;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	20152462	rs996197	A	C	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	20152581	rs2328500	G	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	20168497	rs2179825	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	20243527	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.333;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr20	20246159	rs7261017	A	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	20257962	rs78741533	G	T	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr20	20270816	rs59405436	C	A	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	20373948	rs114718123	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	20377429	rs200582186	AG	A	11671.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.39;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	20392832	rs115274471	T	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.13;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	20392842	rs79777566	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	20439237	rs6035631	G	A	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	20445793	.	TCA	T	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.477;QD=3.00;ReadPosRankSum=0.000;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr20	20483936	rs2273527	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	20484043	rs2273528	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	20504966	rs6046910	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	20505658	rs6075671	C	G	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	20553512	rs1210347	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	20570118	rs57023914	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	20571810	rs144678172	ACAT	A	4972.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	20572096	rs6075681	A	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	20592186	rs2273217	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	20609964	rs11467035	AACACACACAC	A,AAC	2596.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/2:0.22,0.76:72
chr20	20620408	rs6082078	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	20621592	rs6082079	G	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	20634106	rs6132333	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	21117240	rs11476720	GT	G	229.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.458;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr20	21126194	rs6047271	C	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	21142813	rs2236178	T	C	11072.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr20	21186161	rs11087346	A	AG	4733.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	21186296	rs11321878	TA	T	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.688;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr20	21196121	.	CA	C	49	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=13;HapScore=2;MGOF=132;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=49;QD=13.5;SC=ATACATTAACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=4;WE=21196129;WS=21196111;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr20	21227314	rs6047326	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	21313109	rs11481754	T	TA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.323;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr20	21319828	rs202844	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	21321294	rs202845	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.90;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	21328715	rs11087351	GT	G	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	21328952	rs62217931	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	21329950	rs9917457	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	21346241	rs35050238	C	T	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr20	21348982	rs57793155	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	21362703	rs11476840	TA	T	6060.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=27.80;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	21362758	rs6047417	T	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	21695381	rs11908163	G	C	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	21695556	rs17861063	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	22562438	rs1055080	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	22562674	rs1212275	T	C	10314.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-1.526;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:6,409:0.99:415
chr20	22563025	rs1203910	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	23065342	rs3746732	A	G	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr20	23066788	.	GAGC	G	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.379;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:174,21:0.11:195
chr20	23345069	rs6076060	C	T	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:82,149:0.65:231
chr20	23345844	rs6048760	A	C	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:68,166:0.71:234
chr20	23346492	rs6083091	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr20	23346501	rs16985277	T	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.474;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr20	23357938	rs16985298	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.108;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr20	23371022	rs8115381	G	A	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-1.221;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr20	23401904	rs377282170	ACCC	A	20909.73	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:2,507:1.00:509
chr20	23401933	rs201749078	G	T	9428.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:184,437:0.70:621
chr20	23421244	rs78321973	G	A	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:56,132:0.70:188
chr20	23424613	rs3746736	T	C	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr20	23432528	rs2236021	A	G	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:101,175:0.63:276
chr20	23472391	rs2983288	A	G	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	23472467	rs200779140	G	C	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:60,178:0.75:238
chr20	23473522	rs58163647	A	AT	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr20	23476389	rs2273378	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	23476412	rs11482296	C	CT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.076;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr20	23528504	rs73904928	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.925;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:155,53:0.25:208
chr20	23529377	rs3004129	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	23529388	rs2983611	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr20	23531337	rs4362634	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr20	23548774	rs2983617	T	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr20	23586559	rs1966182	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr20	23615819	.	T	TCA,TCACA	6142.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=180;set=Intersection	GT:AF:DP	1/2:0.24,0.72:173
chr20	23618395	rs6138024	T	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	23666484	rs6138037	T	G	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	23666606	rs112139500	C	T	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	23666690	rs2282378	C	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	23667865	rs112308292	C	A	30358.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=1175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;MQRankSum=5.407;QD=25.97;ReadPosRankSum=1.984;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,1167:1.00:1169
chr20	23669630	rs7267397	A	G	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr20	23728365	rs7265165	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.752;QD=3.20;ReadPosRankSum=0.321;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr20	23729722	rs3188314	G	T	28334.77	.	AC=2;AF=1.00;AN=2;DB;DP=1084;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.65;QD=26.19;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,1082:1.00:1082
chr20	23731426	rs13045477	C	T	8074.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:161,377:0.70:538
chr20	23731494	rs6076122	A	G	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	23731560	rs6076123	C	T	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	23804864	rs67845471	C	T	291.79	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr20	23805802	rs115547545	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr20	23805832	rs6036548	G	A	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	23806008	rs6106729	C	T	5256.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:118,246:0.68:364
chr20	23806929	rs58314206	A	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	23807016	rs80316588	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.078;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:434,93:0.18:527
chr20	23807028	rs4407312	A	C	14207.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr20	23807308	rs6106731	G	C	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:26,77:0.75:103
chr20	23807360	rs6106732	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr20	23857982	rs2071445	A	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr20	23860178	rs1799841	A	G	10650.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr20	23966694	rs3004173	T	C	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr20	24524218	rs4815274	C	G	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr20	24524245	rs4813519	A	G	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	24645939	rs2892217	G	A	9430.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	24930085	rs227653	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:335,133:0.28:468
chr20	24939778	rs191767972	C	T	898.98	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr20	24944933	rs761368	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	24950373	rs2064404	A	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	24950874	rs115793571	T	C	6496.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:102,292:0.74:394
chr20	24951081	rs113265404	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr20	24952364	rs113533994	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr20	24959384	rs8124876	CA	TC	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr20	24959386	rs56312312	C	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr20	24973383	rs6138456	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.437;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=2.496;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr20	24987438	rs6083718	C	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	24993414	rs6132785	T	C	6720.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	24994289	rs6050249	C	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr20	24994614	rs112683865	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr20	25003484	rs113213541	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr20	25004071	rs4813543	G	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	25011423	rs6050259	T	C	3106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.994;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:634,219:0.26:853
chr20	25011639	rs60849220	A	G	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.568;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:231,82:0.26:313
chr20	25012995	rs76948865	G	A	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=-1.129;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:54,164:0.75:218
chr20	25027331	rs6132792	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr20	25027425	rs116824617	C	T	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:60,181:0.75:241
chr20	25027526	rs6083730	G	A	13233.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr20	25027587	rs45574242	G	A	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:70,188:0.73:258
chr20	25027630	rs6106989	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,31:0.26:117
chr20	25027692	rs6115015	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr20	25028643	rs138103045	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr20	25028685	rs80288802	C	T	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:55,127:0.70:182
chr20	25038711	rs9967918	C	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr20	25053105	rs743018	G	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr20	25057283	rs6050302	G	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr20	25059442	rs6138482	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=9.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=1.284;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:151,54:0.26:205
chr20	25062394	rs6037016	G	A	612.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.163;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.13;ReadPosRankSum=0.660;SOR=0.230;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr20	25176296	rs6083773	A	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	25176517	rs112801182	C	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.503;QD=17.89;ReadPosRankSum=0.360;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr20	25176564	rs112138283	TC	T	594.25	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr20	25187213	rs2076559	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.376;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:169,64:0.27:233
chr20	25187335	rs73339040	C	T	2775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=0.700;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,130:0.67:194
chr20	25187575	rs11699392	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr20	25190598	rs1007707	A	G	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	25193863	rs2076560	T	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:199,67:0.25:266
chr20	25193949	rs2076561	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-3.017;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:219,71:0.24:290
chr20	25195394	rs6050445	C	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	25195509	rs6050446	A	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	25197135	rs73339087	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr20	25197982	rs4815394	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	25203460	rs11906864	G	A	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:21,98:0.82:119
chr20	25203627	rs11906892	G	A	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:45,128:0.74:173
chr20	25206290	rs6050459	T	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr20	25229230	rs6050485	G	T	236.82	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	25229230	.	GC	TG	177	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=3;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=177;QD=57.6169687156;SC=AGTCGGCGGGGCCCGGGCGTC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=25229239;WS=25229220;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr20	25229231	rs2273473	C	G	236.82	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	25239780	rs8125437	TG	GT	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr20	25252000	rs6050511	T	C	4327.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:65,194:0.75:259
chr20	25255338	rs2227894	C	T	8967.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:146,417:0.74:563
chr20	25255415	rs45587239	C	T	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:82,192:0.70:274
chr20	25255551	rs6050515	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr20	25257202	rs2281561	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr20	25257462	rs2424699	G	A	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.699;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:332,103:0.24:435
chr20	25258916	rs11466827	G	GCCCTGGGACTGGGTCATGGGGCATGTGCC	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	25259200	rs2261109	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,33:0.28:117
chr20	25259807	rs2261115	G	A	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-1.213;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:236,71:0.23:307
chr20	25260931	rs2227890	A	G	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.670;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:494,133:0.21:627
chr20	25261784	rs2261747	G	A	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.828;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:272,99:0.27:371
chr20	25262536	rs10582106	TCTC	T	137.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr20	25263648	rs2145126	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr20	25263756	rs7272959	G	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:40,88:0.69:128
chr20	25264664	rs2257705	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.745;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:68,28:0.29:96
chr20	25264814	rs2227892	T	C	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.110;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:226,68:0.23:294
chr20	25264910	rs2257712	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,15:0.24:63
chr20	25268920	rs3002702	T	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.188;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:239,61:0.20:300
chr20	25270339	rs2257991	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr20	25271086	rs2257432	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr20	25271326	rs2258066	C	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr20	25273362	rs2281562	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,25:0.26:97
chr20	25275553	rs16436	GTTAGTT	G	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.105;SOR=1.596;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr20	25275588	rs369154739	C	T	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:21,92:0.81:113
chr20	25276297	rs1130694	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:201,69:0.26:270
chr20	25276343	rs2258728	G	A	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.225;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:202,77:0.28:279
chr20	25281398	rs2424708	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,30:0.25:118
chr20	25282944	rs10966	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=2.265;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr20	25284343	rs2260197	T	C	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	25288505	rs884613	C	T	113.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.16;ReadPosRankSum=0.792;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr20	25295787	rs2297496	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr20	25301022	rs2274890	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.181;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr20	25320228	rs6050544	T	A	5703.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:89,256:0.74:345
chr20	25371112	.	GGCCCC	G	933.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=0.588;QD=32.20;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr20	25371378	rs145380090	G	GGCCTCCGCC	958.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr20	25388564	rs188473560	C	G	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=2.903;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:252,96:0.28:348
chr20	25398876	rs4815425	G	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr20	25426693	rs5841057	CA	C	1249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.921;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:241,54:0.18:295
chr20	25436466	rs12481409	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:123,47:0.28:170
chr20	25442097	rs6107047	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr20	25442989	rs3036810	G	GGGGAGCC	954.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=43.40;ReadPosRankSum=0.980;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr20	25442991	.	T	TGGTG	996.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.37;ReadPosRankSum=0.896;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr20	25442992	rs2387889	C	G	1006.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.404;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.56;ReadPosRankSum=1.142;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr20	25442997	rs559771	C	G	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.70;ReadPosRankSum=0.608;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr20	25443278	rs113237945	A	ATTTGT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-1.492;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr20	25447896	rs404394	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr20	25447931	rs404148	A	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	25456888	rs437635	A	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.476;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:238,62:0.21:300
chr20	25457049	rs68078266	GCTCCCA	G	1330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=2.184;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:287,95:0.25:382
chr20	25457771	rs6050638	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr20	25459919	rs84816	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr20	25470056	rs431579	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr20	25479058	rs400357	A	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	25484445	rs409401	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr20	25507011	rs10536286	CTT	C	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr20	25507019	rs11087523	T	TA	422.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	25520827	rs11472175	A	AAC	3586.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	25597236	rs6050712	C	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr20	25604655	rs8120065	A	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr20	25666737	rs926487	C	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr20	25666807	rs926486	C	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr20	25755672	rs2721991	G	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr20	25755988	.	AAG	A	1431.73	.	AC=1;AF=0.500;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr20	25829184	rs74788234	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr20	25829290	rs75735480	G	T	3568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-21.417;QD=5.01;ReadPosRankSum=6.728;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:587,126:0.18:713
chr20	25829292	rs76588078	C	T	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-21.441;QD=4.74;ReadPosRankSum=6.947;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:609,127:0.17:736
chr20	25829312	rs78355493	G	T	3880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-23.100;QD=4.43;ReadPosRankSum=4.749;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:733,144:0.16:877
chr20	25829319	rs76467023	A	G	7136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.089;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-28.695;QD=7.91;ReadPosRankSum=2.538;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:686,216:0.24:902
chr20	25829342	rs75063166	T	C	8172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-27.603;QD=9.11;ReadPosRankSum=-8.313;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:665,232:0.26:897
chr20	25829352	rs74961672	T	C	7658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-26.847;QD=8.79;ReadPosRankSum=-9.901;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:638,233:0.27:871
chr20	25829384	rs75757905	T	C	3228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.316;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=13.223;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-19.849;QD=5.39;ReadPosRankSum=0.795;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:481,118:0.20:599
chr20	25829384	.	TTA	CTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=45;MMLQ=28;MQ=50.88;NF=62;NR=104;PP=2944;QD=20;SC=AGTTCGCAAGTTAGGCTTCCT;SbPval=0.68;Source=Platypus;TC=441;TCF=178;TCR=263;TR=166;WE=25829394;WS=25829374;set=Platypus	GT:AD:AF:DP	1/0:275,166:0.38:441
chr20	25829386	rs74835374	A	G	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.213;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=13.223;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-19.567;QD=5.53;ReadPosRankSum=1.609;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:473,115:0.20:588
chr20	25829435	rs79037868	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=51.60;MQRankSum=-9.294;QD=2.16;ReadPosRankSum=1.418;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:245,58:0.19:303
chr20	25829436	rs73348912	T	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=51.48;MQRankSum=-8.446;QD=2.73;ReadPosRankSum=2.952;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:232,66:0.22:298
chr20	25829470	rs75119730	A	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:105,41:0.28:146
chr20	25900042	rs11699407	A	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr20	25900078	rs78346173	A	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr20	25900128	rs79754881	A	T	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=1.937;QD=6.15;ReadPosRankSum=-0.592;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:225,60:0.21:285
chr20	25900135	rs11699441	C	A	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=2.171;QD=6.28;ReadPosRankSum=-0.668;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:227,60:0.21:287
chr20	25900162	rs6037279	C	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:192,96:0.33:288
chr20	25900190	rs199687742	AAATT	A	2723.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:179,79:0.31:258
chr20	25900203	.	T	C	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=4.751;QD=5.03;ReadPosRankSum=1.187;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:168,75:0.31:243
chr20	25900215	rs189420178	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=1.030;QD=1.05;ReadPosRankSum=1.234;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:193,37:0.16:230
chr20	25900330	.	AAC	A	163	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=8;HapScore=1;MGOF=49;MMLQ=25;MQ=52.58;NF=0;NR=12;PP=163;QD=14.4166666667;SC=GTTAAAAAAAAACACACACAC;SbPval=1.0;Source=Platypus;TC=27;TCF=1;TCR=26;TR=12;WE=25900339;WS=25900312;set=Platypus	GT:AD:AF:DP	0/1:15,12:0.44:27
chr20	26061782	rs370228271	CTT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-7.072;QD=0.60;ReadPosRankSum=0.797;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:111,21:0.16:132
chr20	26061859	rs74752031	G	T	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-12.631;QD=4.56;ReadPosRankSum=-1.756;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:202,42:0.17:244
chr20	26061865	rs79051971	G	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-12.509;QD=1.05;ReadPosRankSum=-3.382;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:204,38:0.16:242
chr20	26061877	rs74473084	G	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-12.746;QD=3.00;ReadPosRankSum=-3.753;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:199,32:0.14:231
chr20	26061880	rs80023315	A	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-12.792;QD=2.88;ReadPosRankSum=-3.886;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:198,30:0.13:228
chr20	26061884	rs78196071	C	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-12.939;QD=2.57;ReadPosRankSum=-4.040;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:198,28:0.12:226
chr20	26062002	rs74725001	G	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-5.695;QD=3.98;ReadPosRankSum=1.623;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr20	26062021	rs79451834	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=14.247;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-5.939;QD=13.73;ReadPosRankSum=0.095;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr20	26062032	rs76871018	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.961;MLEAC=1;MLEAF=0.500;MQ=52.20;MQRankSum=-3.325;QD=2.44;ReadPosRankSum=0.193;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr20	26062036	rs77424811	A	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=12.329;MLEAC=1;MLEAF=0.500;MQ=52.13;MQRankSum=-5.097;QD=20.89;ReadPosRankSum=-2.987;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr20	26062047	rs80162470	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=9.040;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-5.244;QD=21.20;ReadPosRankSum=-0.171;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr20	26063560	rs5742261	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	26063625	rs77830989	T	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-12.128;QD=2.22;ReadPosRankSum=-0.565;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:131,18:0.12:149
chr20	26063643	rs41275516	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-11.041;QD=3.10;ReadPosRankSum=1.082;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:106,18:0.15:124
chr20	26063645	rs73105823	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-10.949;QD=3.35;ReadPosRankSum=1.246;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:104,18:0.15:122
chr20	26063684	rs78016604	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:54,13:0.19:67
chr20	26063696	rs374797956	A	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:43,11:0.20:54
chr20	26063712	rs113808324	A	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr20	26063726	rs199551690	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr20	26072253	rs141693243	A	G	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,91:0.50:181
chr20	26072269	rs2424731	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:91,24:0.21:115
chr20	26094383	.	C	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-5.955;QD=8.16;ReadPosRankSum=-2.678;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr20	26094384	.	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-6.201;QD=8.02;ReadPosRankSum=-3.051;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr20	26094406	.	A	AC	206.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:67,16:0.19:83
chr20	26094407	.	T	C	96.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-4.439;QD=1.11;ReadPosRankSum=-1.688;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:76,11:0.13:87
chr20	26094409	.	T	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=17.179;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-6.428;QD=2.44;ReadPosRankSum=-1.748;SOR=3.872;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr20	26094416	.	A	AG	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=7.297;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-3.403;QD=1.01;ReadPosRankSum=-1.456;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr20	26094420	.	T	C	1822.77	.	AC=1;AF=0.500;AN=2;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr20	26094475	rs374094583	AC	A	9814.73	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:315,255:0.45:570
chr20	26094483	rs146324498	CAT	C	10095.73	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:355,269:0.43:624
chr20	26094492	rs374224609	T	C	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:417,291:0.41:708
chr20	26094501	rs76641988	T	C	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	0/1:573,263:0.31:836
chr20	26094564	rs79802274	T	G	19608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-4.047;QD=21.06;ReadPosRankSum=1.662;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:430,501:0.54:931
chr20	26094567	rs62211581	T	C	19544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=956;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-4.001;QD=21.34;ReadPosRankSum=1.606;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:420,496:0.54:916
chr20	26094600	.	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-0.835;QD=2.00;ReadPosRankSum=-0.811;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:473,111:0.19:584
chr20	26094605	rs150462295	G	A	11051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-0.711;QD=20.28;ReadPosRankSum=0.626;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:260,285:0.52:545
chr20	26094609	rs80248029	C	A	10529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-0.554;QD=20.77;ReadPosRankSum=0.375;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:240,267:0.53:507
chr20	26094628	.	G	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=1.473;QD=1.39;ReadPosRankSum=-1.618;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:260,55:0.17:315
chr20	26094638	rs76011113	C	T	3827.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:118,134:0.53:252
chr20	26094651	rs77014314	T	C	4048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.500;MQ=52.58;MQRankSum=-5.519;QD=21.65;ReadPosRankSum=-1.460;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:81,106:0.57:187
chr20	26094660	rs75350116	T	C	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=15.115;MLEAC=1;MLEAF=0.500;MQ=51.27;MQRankSum=-6.725;QD=22.14;ReadPosRankSum=-0.515;SOR=2.005;set=HC	GT:AD:AF:DP	0/1:65,77:0.54:142
chr20	26094689	rs79312112	A	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr20	29625745	rs73621455	A	T	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.348;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.31;MQRankSum=-4.019;QD=16.89;ReadPosRankSum=1.329;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:23,33:0.59:56
chr20	29625769	rs78251253	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.66;MQRankSum=-4.686;QD=4.83;ReadPosRankSum=-2.911;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr20	29625774	.	G	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=-3.133;QD=1.52;ReadPosRankSum=-0.180;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:152,19:0.11:171
chr20	29625788	rs4635596	C	T	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-4.911;QD=7.94;ReadPosRankSum=1.404;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:167,116:0.41:283
chr20	29625838	rs62198353	C	A	11519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-15.241;QD=17.53;ReadPosRankSum=2.939;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:216,441:0.67:657
chr20	29625854	.	C	G	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=-5.268;QD=1.50;ReadPosRankSum=1.862;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:680,78:0.10:758
chr20	29625856	.	A	G	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-5.407;QD=1.47;ReadPosRankSum=2.013;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:692,78:0.10:770
chr20	29625867	rs148671283	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.46;MQRankSum=-5.861;QD=0.61;ReadPosRankSum=1.996;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:760,78:0.09:838
chr20	29625876	rs73611718	C	T	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-5.094;QD=3.39;ReadPosRankSum=0.839;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:680,184:0.21:864
chr20	29625895	rs76435412	G	A	3980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=54.82;MQRankSum=-11.377;QD=4.66;ReadPosRankSum=-1.964;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:681,173:0.20:854
chr20	29625905	.	T	C	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DP=799;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-10.076;QD=2.13;ReadPosRankSum=1.126;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:671,115:0.15:786
chr20	29625924	.	A	ACTT	1679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DP=603;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-9.180;QD=2.99;ReadPosRankSum=3.241;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:482,80:0.14:562
chr20	29625928	.	G	A	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.833;ClippingRankSum=0.000;DP=512;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-10.624;QD=3.49;ReadPosRankSum=2.233;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:438,73:0.14:511
chr20	29625935	rs62198354	A	G	2777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.387;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-16.437;QD=7.74;ReadPosRankSum=-2.464;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:274,85:0.24:359
chr20	29625946	rs80340867	A	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.946;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-14.354;QD=4.17;ReadPosRankSum=0.232;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:262,49:0.16:311
chr20	29625950	rs78096528	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-13.982;QD=3.98;ReadPosRankSum=0.928;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:250,44:0.15:294
chr20	29625965	rs79873624	G	A	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-11.654;QD=4.64;ReadPosRankSum=-0.051;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:190,40:0.17:230
chr20	29625975	.	C	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-9.496;QD=0.95;ReadPosRankSum=0.145;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:176,25:0.12:201
chr20	29625985	rs79368216	G	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-11.337;QD=6.07;ReadPosRankSum=-1.069;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:147,42:0.22:189
chr20	29628164	rs62199575	G	A	8357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-16.837;QD=19.30;ReadPosRankSum=-4.968;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:169,264:0.61:433
chr20	29628167	rs181840913	C	T	1920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-6.954;QD=3.71;ReadPosRankSum=0.288;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:383,135:0.26:518
chr20	29628226	rs78710112	G	A	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=1606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-4.106;QD=1.07;ReadPosRankSum=7.401;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:1338,265:0.17:1603
chr20	29628271	rs62199576	C	T	20301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=1466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-9.205;QD=13.87;ReadPosRankSum=-2.560;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:666,798:0.55:1464
chr20	29628335	rs11152455	A	T	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.853;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=4.810;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-15.002;QD=5.47;ReadPosRankSum=-4.351;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:461,164:0.26:625
chr20	29628341	rs11152456	C	A	6532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.362;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=22.051;MLEAC=1;MLEAF=0.500;MQ=53.06;MQRankSum=-20.672;QD=11.88;ReadPosRankSum=-4.304;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:358,192:0.35:550
chr20	29628361	rs11152457	A	C	2330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.716;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=19.220;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-18.940;QD=5.42;ReadPosRankSum=7.112;SOR=1.999;set=HC	GT:AD:AF:DP	0/1:319,111:0.26:430
chr20	29628431	rs11152458	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:129,102:0.44:231
chr20	29628477	rs62199577	T	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr20	29628488	rs11152459	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-2.886;QD=2.68;ReadPosRankSum=-0.224;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr20	29628498	rs62199578	A	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-1.648;QD=2.35;ReadPosRankSum=-0.656;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr20	29628519	.	G	T	124	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=27;MQ=51.05;NF=0;NR=10;PP=124;QD=15.8771212547;SC=ATACAATGTGGTAGAGAAATC;SbPval=1.0;Source=Platypus;TC=44;TCF=2;TCR=42;TR=10;WE=29628527;WS=29628509;set=Platypus	GT:AD:AF:DP	0/1:34,10:0.23:44
chr20	29630570	.	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.956;QD=1.79;ReadPosRankSum=-0.446;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr20	29630582	rs113392373	A	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:90,64:0.42:154
chr20	29630758	rs10084539	C	G	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-24.788;QD=1.67;ReadPosRankSum=8.238;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:747,89:0.11:836
chr20	29630760	rs137900323	T	C	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-24.669;QD=1.72;ReadPosRankSum=8.153;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:723,90:0.11:813
chr20	29632519	rs76216438	GA	G	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:43,11:0.20:54
chr20	29632543	rs9647042	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.118;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-4.796;QD=0.43;ReadPosRankSum=-0.984;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr20	29632564	rs2379677	G	A	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=7.726;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-7.855;QD=17.53;ReadPosRankSum=-3.696;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:37,108:0.74:145
chr20	29632593	rs112146379	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=5.654;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=0.912;QD=2.97;ReadPosRankSum=1.188;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:233,70:0.23:303
chr20	29632595	.	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=3.697;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-3.200;QD=0.43;ReadPosRankSum=0.273;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:284,47:0.14:331
chr20	29632638	rs9647043	C	A	2555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=7.046;QD=3.93;ReadPosRankSum=-0.446;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:468,182:0.28:650
chr20	29632674	rs138867112	T	TA	3556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=9.016;QD=5.07;ReadPosRankSum=0.172;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:483,219:0.31:702
chr20	29632709	rs78816635	C	T	3192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-4.896;QD=5.30;ReadPosRankSum=0.766;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:485,117:0.19:602
chr20	29632714	rs76788819	C	A	3050.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.751;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-5.064;QD=5.52;ReadPosRankSum=0.961;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:448,105:0.19:553
chr20	29632715	rs74765991	T	G	3030.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-5.079;QD=5.51;ReadPosRankSum=0.785;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:445,105:0.19:550
chr20	29632726	rs138922778	CTATT	C	2399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=4.240;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-6.946;QD=5.67;ReadPosRankSum=-0.243;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:339,84:0.20:423
chr20	29632761	rs6057390	T	C	5830.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:49,189:0.79:238
chr20	29633761	.	A	T	51	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=5;HapScore=4;MGOF=17;MMLQ=27;MQ=51.79;NF=2;NR=0;PP=51;QD=42.8856062736;SC=AAGTATACATATTTTAATATG;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=2;WE=29633778;WS=29633756;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr20	29633770	.	T	TAA	238	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=4;MGOF=17;MMLQ=27;MQ=50.7;NF=5;NR=0;PP=238;QD=54.2;SC=TATTTTAATATGTGTTGTGGT;SbPval=1.0;Source=Platypus;TC=13;TCF=11;TCR=2;TR=5;WE=29633778;WS=29633756;set=Platypus	GT:AD:AF:DP	0/1:8,5:0.38:13
chr20	29633794	rs10084493	C	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr20	29633850	rs2313265	G	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.010;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=8.874;MLEAC=1;MLEAF=0.500;MQ=53.20;MQRankSum=-6.184;QD=2.53;ReadPosRankSum=0.054;SOR=1.618;set=HC	GT:AD:AF:DP	0/1:114,28:0.20:142
chr20	29633887	rs2313264	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:195,75:0.28:270
chr20	29633916	rs2554494	G	A	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=55.12;MQRankSum=-5.552;QD=7.92;ReadPosRankSum=-1.810;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:173,128:0.43:301
chr20	29633927	rs62196372	C	A	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-0.994;QD=4.82;ReadPosRankSum=-0.219;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:321,66:0.17:387
chr20	29633929	rs7509092	A	G	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-1.770;QD=4.96;ReadPosRankSum=-1.192;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:319,69:0.18:388
chr20	29633952	rs62196374	C	T	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-3.687;QD=3.01;ReadPosRankSum=-2.059;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:336,51:0.13:387
chr20	29633966	rs201513813	GTT	G	3308.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:178,132:0.43:310
chr20	29633986	rs2379676	A	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-6.961;QD=0.64;ReadPosRankSum=0.003;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:306,28:0.08:334
chr20	29634037	rs4006816	G	A	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr20	29634049	rs2379675	G	C	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr20	29634102	rs113531250	TC	T	434.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr20	29634104	rs56780525	C	T	443.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.049;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-2.815;QD=23.36;ReadPosRankSum=-1.597;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr20	29652010	rs78663325	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr20	29652036	rs62206781	C	T	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:117,99:0.46:216
chr20	29652065	rs73611950	A	G	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.946;QD=6.42;ReadPosRankSum=-1.250;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:373,98:0.21:471
chr20	29652083	rs66615221	C	T	4784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.036;QD=6.49;ReadPosRankSum=-1.116;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:582,155:0.21:737
chr20	29652099	rs74613177	G	T	6084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=1.669;QD=5.81;ReadPosRankSum=2.249;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:844,204:0.19:1048
chr20	29652102	.	C	CT	5869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DP=1123;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.673;QD=5.36;ReadPosRankSum=4.017;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:888,207:0.19:1095
chr20	29652105	rs76299428	T	C	8251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=1174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-5.585;QD=7.22;ReadPosRankSum=-0.551;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:885,258:0.23:1143
chr20	29652107	rs62206782	T	G	8269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=1228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.646;QD=6.95;ReadPosRankSum=-0.454;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:922,268:0.23:1190
chr20	29652165	rs62206783	C	T	8043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=1452;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=4.698;QD=5.66;ReadPosRankSum=2.478;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:1128,293:0.21:1421
chr20	29652166	rs79732696	G	A	5116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=1450;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-8.080;QD=3.58;ReadPosRankSum=2.234;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:1144,287:0.20:1431
chr20	29652172	rs78862124	T	C	47974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=1452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-4.999;QD=33.46;ReadPosRankSum=-0.245;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:227,1207:0.84:1434
chr20	29652173	rs79057885	G	A	20006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=1449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=6.761;QD=14.11;ReadPosRankSum=1.534;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:870,548:0.39:1418
chr20	29652182	rs36076351	C	T	4789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=1390;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-7.478;QD=3.53;ReadPosRankSum=4.628;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:1095,263:0.19:1358
chr20	29652183	rs71276709	G	A	7424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=1377;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=3.725;QD=5.49;ReadPosRankSum=-0.103;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:1094,259:0.19:1353
chr20	29652191	rs62206784	C	T	43541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=1307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-5.477;QD=33.96;ReadPosRankSum=-0.386;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:212,1070:0.83:1282
chr20	29652191	.	CGTC	TGTC,TGTT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=68;MMLQ=27;MQ=58.69;NF=332,102;NR=391,132;PP=2962,2944;QD=20;SC=TCGGCAGCCTCGTCATTGCAT;SbPval=0.53;Source=Platypus;TC=901;TCF=416;TCR=485;TR=723,234;WE=29652213;WS=29652155;set=Platypus	GT:AF:DP	0/1:0.80:901
chr20	29652194	rs34913243	C	T	6873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=1266;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=5.099;QD=5.55;ReadPosRankSum=-1.574;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:997,241:0.19:1238
chr20	29652196	rs62206785	T	C	7845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=1250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-5.734;QD=6.49;ReadPosRankSum=0.965;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:940,268:0.22:1208
chr20	29652205	rs71265694	A	G	5711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=1169;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=5.106;QD=4.94;ReadPosRankSum=-1.623;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:944,212:0.18:1156
chr20	29652236	rs62206786	G	C	26349.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:131,612:0.82:743
chr20	29652254	rs77357187	G	A	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=2.983;QD=2.82;ReadPosRankSum=-1.083;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:359,101:0.22:460
chr20	29652294	rs148337041	C	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=2.096;QD=3.83;ReadPosRankSum=-0.456;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:118,37:0.24:155
chr20	29652303	rs62206787	T	C	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:25,97:0.80:122
chr20	29890928	rs114227378	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr20	29896148	rs115233038	C	T	227.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr20	29960787	rs34247288	C	T	10100.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:230,483:0.68:713
chr20	29965014	rs709045	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.404;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr20	29965196	rs144077858	C	T	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:43,119:0.73:162
chr20	29966275	rs2223527	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:199,77:0.28:276
chr20	29966362	rs2206383	A	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	29977156	rs2295500	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.871;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr20	29978216	rs2206381	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	30037677	rs41307153	G	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr20	30037783	rs2273468	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.459;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:220,68:0.24:288
chr20	30053255	rs6059440	G	A	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:31,98:0.76:129
chr20	30060562	rs6088308	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr20	30060720	rs111977476	G	GCACACA	4294.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:127,135:0.52:262
chr20	30064331	rs1006459	A	G	19514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=1304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-2.872;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:353,922:0.72:1275
chr20	30071844	rs2233834	C	T	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:35,105:0.75:140
chr20	30102619	rs138291873	A	ACCT	29591.73	.	AC=2;AF=1.00;AN=2;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=44.57;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,664:1.00:664
chr20	30115140	rs34469982	CA	C	632.94	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:6,42:0.88:48
chr20	30142390	rs147921776	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	30142480	rs149062213	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.35;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	30147270	rs6059981	T	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	30147554	rs6058103	C	A	13519.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr20	30153934	rs2376862	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	30154237	rs11906851	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	30156903	rs11376444	G	GT	705.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.270;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:18,54:0.75:72
chr20	30157026	rs4607	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	30193110	rs6060263	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	30193538	rs15817	A	G	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr20	30194899	rs6058197	A	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	30195166	rs6088736	C	G	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	30226690	rs45557936	G	A	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.391;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:105,42:0.29:147
chr20	30226764	rs6088857	G	C	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.175;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:209,57:0.21:266
chr20	30227639	rs6088858	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr20	30232452	rs6120970	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,28:0.28:100
chr20	30232504	rs7269866	G	A	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:220,91:0.29:311
chr20	30232673	rs11907253	G	A	6672.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:122,306:0.71:428
chr20	30345438	rs150697779	T	A	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:79,159:0.67:238
chr20	30347832	rs6060930	A	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	30354598	rs11299452	CT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.166;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr20	30354624	rs6058456	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr20	30363645	rs6060938	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	30363853	.	G	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=2.117;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr20	30371454	rs6060943	A	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,60:0.81:74
chr20	30381758	rs1062794	G	C	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	30382108	rs6060952	T	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.92;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	30382315	rs3203770	A	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.661;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:164,53:0.24:217
chr20	30385192	rs6058463	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.229;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:100,30:0.23:130
chr20	30408435	rs12480305	T	C	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr20	30409452	rs6058469	T	C	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:88,242:0.73:330
chr20	30409573	rs6060970	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:23,92:0.80:115
chr20	30411427	rs6060971	T	C	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:74,144:0.66:218
chr20	30414334	rs11907651	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr20	30414528	rs76530988	G	A	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.131;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:453,136:0.23:589
chr20	30414560	rs41293108	C	G	7738.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:98,339:0.78:437
chr20	30419051	rs4518038	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.601;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr20	30421459	rs6089093	C	T	10407.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr20	30433352	rs6121246	C	T	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	30436088	rs8118150	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	30437522	rs3746599	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	30449325	rs947310	C	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	30449516	rs11417441	G	GC	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	30451844	rs6087786	C	T	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	30452709	rs41310803	A	G	3606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=1180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.252;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:890,281:0.24:1171
chr20	30460869	rs6058475	T	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr20	30467601	rs140644948	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr20	30467811	rs6089106	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=10.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=2.369;SOR=1.840;set=HC	GT:AD:AF:DP	0/1:63,25:0.28:88
chr20	30472021	rs138716259	ATTAT	A	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr20	30474885	rs148886837	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr20	30507619	.	G	A	6615.77	.	AC=1;AF=0.500;AN=2;DP=436;set=Intersection	GT:AD:AF:DP	0/1:111,307:0.73:418
chr20	30512713	rs116092580	C	T	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr20	30527065	rs6061043	T	C	2523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=1.580;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:421,170:0.29:591
chr20	30530939	rs6058498	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.988;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr20	30602775	rs112249840	C	T	15410.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:222,703:0.76:925
chr20	30605976	.	AGGGGGCGGGGGCGGGGGAGGGGC	A	738.73	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.94;QD=43.45;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	30618787	rs6061112	T	C	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	30659537	rs34774796	C	T	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.020;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:702,166:0.19:868
chr20	30661297	rs2297304	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,19:0.24:79
chr20	30671875	rs242607	C	T	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	30676567	rs144123944	G	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,58:0.77:75
chr20	30681999	rs6121337	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	30729488	rs6089193	T	C	2742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.936;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:459,176:0.28:635
chr20	30747679	rs4911553	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr20	30753270	rs14316	T	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:176,65:0.27:241
chr20	30777800	rs11907716	T	C	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.942;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:304,127:0.29:431
chr20	30777860	rs11907235	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.562;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:132,65:0.33:197
chr20	30795819	rs1923095	T	C	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.591;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:460,174:0.27:634
chr20	30802911	rs111551822	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-2.000;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr20	30816111	rs6579005	A	G	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.701;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:428,122:0.22:550
chr20	30818609	rs137890154	C	T	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr20	30825697	rs78443180	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr20	30825708	rs17123088	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr20	30898399	rs138618271	C	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.073;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:276,94:0.25:370
chr20	30898573	rs143532330	G	A	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.436;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:245,80:0.25:325
chr20	30919183	rs1029116	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr20	30947708	rs115221335	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr20	30959704	rs2424879	A	G	2844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=-0.798;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:36,132:0.79:168
chr20	31019024	rs2295765	C	T	8834.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr20	31021430	rs141346625	G	C	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.833;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:438,152:0.26:590
chr20	31022959	rs6058694	T	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	31023899	rs149359320	C	T	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:427,171:0.29:598
chr20	31041365	rs148477403	C	T	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.102;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:620,210:0.25:830
chr20	31044191	rs73246513	G	A	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:43,111:0.72:154
chr20	31099311	rs159428	T	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr20	31196471	rs8114375	A	G	27681.77	.	AC=2;AF=1.00;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	1/1:2,1090:1.00:1092
chr20	31291161	rs9421	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	31291625	rs28620238	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:81,30:0.27:111
chr20	31291919	rs35093495	GGGCA	G	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	31292298	rs59379723	CA	C	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=7.20;ReadPosRankSum=1.359;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:37,74:0.67:111
chr20	31294655	rs28548540	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	31374259	rs2424913	C	T	9818.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr20	31374520	rs2424914	A	G	9843.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr20	31376490	rs4911260	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	31383530	rs875041	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr20	31384880	rs6057648	C	A	7906.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:151,352:0.70:503
chr20	31386347	rs6058891	T	C	11496.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:1,438:1.00:439
chr20	31386449	rs2424922	T	C	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,396:0.99:398
chr20	31387942	rs76661393	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr20	31387954	rs1997797	C	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr20	31388077	rs17123655	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.958;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr20	31388530	rs147854568	G	C	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr20	31388636	rs2424928	T	C	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:107,221:0.67:328
chr20	31389009	rs2065576	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr20	31421748	rs73904049	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.266;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:17,45:0.73:62
chr20	31446645	rs853853	A	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	31446858	rs8123073	A	G	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr20	31451788	rs372464707	AT	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.855;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr20	31466347	rs13037174	C	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.177;QD=29.49;ReadPosRankSum=-1.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr20	31466364	rs13037187	C	T	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.04;ReadPosRankSum=0.667;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr20	31466387	rs13037762	A	G	826.78	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:1,23:0.96:24
chr20	31466534	rs13037496	C	T	4509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=2.519;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:101,214:0.68:315
chr20	31466652	rs113453076	C	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr20	31473180	rs4911271	A	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr20	31473483	rs6119300	G	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	31480938	rs2377733	C	T	4760.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:98,222:0.69:320
chr20	31480961	rs2377734	C	T	6179.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:122,289:0.70:411
chr20	31484417	rs11167186	T	A	5392.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:90,250:0.74:340
chr20	31486206	rs6058948	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr20	31494382	rs6120033	G	A	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	31497682	rs78951406	G	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:55,87:0.61:142
chr20	31505292	rs13037781	C	T	32172.77	.	AC=2;AF=1.00;AN=2;DB;DP=1244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,1231:1.00:1231
chr20	31547898	rs59681625	G	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:323,121:0.27:444
chr20	31573528	rs2274343	A	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	31575716	rs17123930	T	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	31583439	rs17123951	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.405;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:210,79:0.27:289
chr20	31585351	rs452299	C	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	31588992	rs6059007	A	G	6375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.912;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:127,304:0.71:431
chr20	31589118	rs17123975	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:119,46:0.28:165
chr20	31590686	rs1133358	C	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.142;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:83,34:0.29:117
chr20	31598781	rs6120085	T	C	5513.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:90,249:0.73:339
chr20	31598994	rs6141358	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,75:0.74:102
chr20	31604999	rs6057701	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr20	31606237	rs3746388	C	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr20	31606469	rs140858734	C	T	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.374;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:521,175:0.25:696
chr20	31607345	rs142469574	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr20	31607654	rs45626037	T	C	5924.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:70,263:0.79:333
chr20	31608250	rs6057703	C	A	11780.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr20	31608423	rs150904392	C	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:135,61:0.31:196
chr20	31609246	rs62207506	G	A	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:40,150:0.79:190
chr20	31609433	rs13043556	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr20	31619357	rs4911286	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	31619578	rs6059027	A	G	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	31619724	rs2070312	A	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr20	31621564	rs2070315	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.524;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr20	31621583	rs2070316	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr20	31621830	rs112771934	GT	G	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr20	31621901	rs76245008	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,73:0.67:109
chr20	31621939	rs79189292	C	A	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:52,108:0.68:160
chr20	31622083	rs2070317	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:147,44:0.23:191
chr20	31622768	rs6059032	C	A	23505.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:1,888:1.00:889
chr20	31622839	rs6059033	T	C	33100.77	.	AC=2;AF=1.00;AN=2;DB;DP=1300;set=Intersection	GT:AD:AF:DP	1/1:0,1288:1.00:1288
chr20	31624368	rs6059035	C	T	17086.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:1,659:1.00:660
chr20	31626558	rs6088078	G	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	31626621	rs6057708	C	T	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	31627291	rs4911287	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	31629911	rs2070319	G	A	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	31643511	rs384430	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	31644520	rs408538	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	31647126	rs6088082	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	31647864	rs6088084	C	A	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.029;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:348,109:0.24:457
chr20	31647935	rs2424936	G	T	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	31649781	rs398444	T	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:19,78:0.80:97
chr20	31651583	rs403461	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	31652292	rs4911290	G	A	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.104;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:371,136:0.27:507
chr20	31652596	rs2093066	C	T	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:106,227:0.68:333
chr20	31656632	rs6057717	C	G	2404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.483;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:543,168:0.24:711
chr20	31656837	rs2424938	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	31659844	rs116104023	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.313;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr20	31659927	rs45499201	A	G	4899.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:64,225:0.78:289
chr20	31660543	rs378098	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:101,188:0.65:289
chr20	31671663	rs2424945	T	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr20	31673846	rs2070325	A	G	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.107;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:286,95:0.25:381
chr20	31676622	rs2424949	G	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	31676804	rs2889732	A	C	20617.77	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr20	31676869	rs6119321	A	C	6182.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:86,274:0.76:360
chr20	31677474	rs7271727	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.950;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr20	31677474	.	AGT	GGC	342	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=24;MQ=60.0;NF=0;NR=9;PP=342;QD=43.9408749847;SC=AGGCCCTTGAAGTGAGGAGTG;SbPval=1.0;Source=Platypus;TC=37;TCF=5;TCR=32;TR=9;WE=31677484;WS=31677464;set=Platypus	GT:AD:AF:DP	0/1:28,9:0.24:37
chr20	31677476	rs6057722	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.841;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr20	31683044	rs12329638	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr20	31757202	rs76950763	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:70,25:0.26:95
chr20	31760708	rs6579083	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr20	31768145	rs747136	A	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr20	31768363	rs34968847	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:109,38:0.26:147
chr20	31811551	rs725914	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,86:0.71:121
chr20	31812923	rs3818222	G	A	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	31814348	rs1570033	G	A	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:52,143:0.73:195
chr20	31825436	rs58831055	A	AG	1591.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr20	31825704	.	ATGTGTGTGTGTGTGTG	A,ATGTGTGTG	1421	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.55;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=16;MQ=59.99;NF=1,1;NR=29,29;PP=1421,121;QD=47.4666666667;SC=GTATGTGTGCATGTGTGTGTG;SbPval=0.35;Source=Platypus;TC=70;TCF=1;TCR=69;TR=30,30;WE=31825729;WS=31825685;set=Platypus	GT:AF:DP	0/1:0.43:70
chr20	31826027	rs6059183	T	C	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:55,157:0.74:212
chr20	31826088	rs36225274	GGCAGTGACCCTGAA	G	1937.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:18,58:0.76:76
chr20	31826130	rs6141898	G	T	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.125;MLEAC=1;MLEAF=0.500;MQ=61.82;MQRankSum=1.817;QD=17.55;ReadPosRankSum=0.757;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr20	31827439	rs6141899	A	G	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr20	31828254	rs6059186	T	C	4947.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:44,128:0.74:172
chr20	31828265	rs6059187	A	G	4717.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:42,114:0.73:156
chr20	31828336	.	A	AGATG	147.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr20	31876485	rs2295576	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr20	31876681	rs1078761	A	G	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.705;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:395,143:0.27:538
chr20	31897554	rs1999663	G	C	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:80,191:0.70:271
chr20	31954819	rs368904466	TA	T	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.334;QD=3.05;ReadPosRankSum=-1.342;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:111,58:0.34:169
chr20	31954890	rs291674	C	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	31981849	rs291700	T	C	12502.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,499:1.00:500
chr20	32000351	rs291694	A	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	32077925	rs75667555	C	T	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.943;QD=16.34;ReadPosRankSum=-1.183;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr20	32078042	.	A	AGGCGGGC	459.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr20	32211760	.	G	GA	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.465;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:67,23:0.26:90
chr20	32212690	rs3803939	C	T	7570.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:58,325:0.85:383
chr20	32245546	rs13037669	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	32255233	rs3746459	T	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	32328968	rs6087514	G	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr20	32379263	rs2626551	T	C	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	32660190	rs10485504	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,40:0.83:48
chr20	32664864	rs10649600	C	CCAG	17673.73	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:23,678:0.97:701
chr20	32691516	.	C	CT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.880;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr20	32856998	rs6058017	A	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	32873447	rs17091705	G	A	21016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=1113;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=19.19;ReadPosRankSum=-2.630;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:149,946:0.86:1095
chr20	32878481	rs7271501	G	C	37964.77	.	AC=1;AF=0.500;AN=2;DB;DP=2081;set=Intersection	GT:AD:AF:DP	0/1:380,1679:0.82:2059
chr20	32879484	rs7273572	G	A	6005.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:64,255:0.80:319
chr20	32996689	rs3761147	G	T	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=0.871;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:29,68:0.70:97
chr20	33026472	rs116524084	T	A	759.78	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr20	33033325	rs146416682	C	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:12,82:0.87:94
chr20	33037336	rs3736762	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-2.694;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:108,18:0.14:126
chr20	33053985	rs11480899	A	AT	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	33057954	rs6059856	G	C	15775.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr20	33057974	rs10716089	CT	C	14517.73	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr20	33059478	.	GGT	G	270	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=1;MGOF=17;MMLQ=18;MQ=59.05;NF=0;NR=21;PP=270;QD=13.0;SC=GGGCTTAAGGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=72;TCF=0;TCR=72;TR=21;WE=33059493;WS=33059468;set=Platypus	GT:AD:AF:DP	0/1:51,21:0.29:72
chr20	33104104	rs146925128	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:19,106:0.85:125
chr20	33104250	.	CG	C	10495.73	.	AC=1;AF=0.500;AN=2;DP=421;set=Intersection	GT:AD:AF:DP	0/1:73,315:0.81:388
chr20	33104592	rs2424993	G	C	15107.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr20	33146773	.	C	T	4827.77	.	AC=1;AF=0.500;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	0/1:30,211:0.88:241
chr20	33147737	rs6059915	C	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	33148861	rs6059916	T	G	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	33150503	rs6059918	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.824;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr20	33225558	rs115948070	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr20	33225793	.	G	GA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.610;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr20	33231978	rs146928506	T	C	8042.84	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:47,355:0.88:402
chr20	33232991	.	CA	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.203;QD=5.09;ReadPosRankSum=0.038;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr20	33297810	rs369052205	G	GC	782.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	33297811	rs2378257	A	C	791.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	33326876	rs6060025	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	33328420	rs61751051	C	T	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.434;QD=1.27;ReadPosRankSum=-0.738;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:488,94:0.16:582
chr20	33334540	rs910872	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	33334734	.	TAA	T	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.543;QD=2.45;ReadPosRankSum=0.748;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr20	33337751	rs3787220	T	C	18808.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:1,726:1.00:727
chr20	33342439	rs1884432	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	33342477	rs6087625	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=9.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.538;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr20	33346556	rs11468960	ATC	A	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:82,22:0.21:104
chr20	33364584	rs6060043	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	33364655	rs6120723	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.118;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr20	33370266	rs6060048	T	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr20	33437881	rs370887247	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.213;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:177,32:0.15:209
chr20	33440212	.	G	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-13.005;ClippingRankSum=0.000;DP=1498;ExcessHet=3.0103;FS=366.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.029;SOR=12.488;set=HC	GT:AD:AF:DP	0/1:882,514:0.37:1396
chr20	33464572	rs146486104	C	A	757.84	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr20	33470694	rs4911163	C	T	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.716;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:470,101:0.18:571
chr20	33496667	.	GA	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.864;QD=1.21;ReadPosRankSum=0.260;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:69,33:0.32:102
chr20	33500245	rs3787214	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.191;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr20	33500378	rs2378294	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.954;QD=1.57;ReadPosRankSum=-0.331;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:154,34:0.18:188
chr20	33507379	.	AGTGTGTGT	AGT,A	821.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=43;set=Intersection	GT:AF:DP	1/1:0.92:24
chr20	33509275	rs3818273	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.009;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:409,77:0.16:486
chr20	33509523	rs2273683	C	T	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr20	33533736	rs734111	A	C	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	33570425	.	CT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.504;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr20	33572941	rs2425007	A	G	12899.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr20	33573820	.	CCT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.103;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr20	33574022	rs2425008	G	C	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	33574751	rs141268260	G	A	33635.77	.	AC=1;AF=0.500;AN=2;DB;DP=1861;set=Intersection	GT:AD:AF:DP	0/1:339,1500:0.82:1839
chr20	33574765	rs3746446	T	C	2761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=1660;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.834;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:1336,305:0.19:1641
chr20	33575347	rs3053708	C	CAT	11555.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	33576200	rs199866551	CATGT	C	1372.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr20	33578251	rs3746444	A	G	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=4.240;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:299,95:0.24:394
chr20	33578778	rs138164961	C	G	18798.77	.	AC=1;AF=0.500;AN=2;DB;DP=983;set=Intersection	GT:AD:AF:DP	0/1:148,827:0.85:975
chr20	33578899	rs2425009	T	C	10690.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:4,397:0.99:401
chr20	33581889	rs7268266	T	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.593;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.749;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:264,62:0.19:326
chr20	33581955	rs2425012	G	A	17674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=1007;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=0.949;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:189,804:0.81:993
chr20	33583033	rs10536288	CAAA	C	592.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	33583037	rs61501849	C	G	601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	33583114	rs2425014	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	33583331	rs2425015	A	G	15896.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr20	33584289	rs3746438	C	T	12359.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr20	33584822	rs11167250	T	TG	642.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	33584864	rs11167251	C	CT	1576.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	33586193	rs3746436	C	T	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.896;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:647,134:0.17:781
chr20	33587198	rs3746435	G	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.796;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:264,46:0.15:310
chr20	33587553	rs369393561	TCC	T	6249.73	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:60,289:0.83:349
chr20	33588698	rs67885143	TGAGGCTGGGCAAGGGCTGTGGG	T	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=9.770;QD=3.26;ReadPosRankSum=-1.148;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:195,35:0.15:230
chr20	33589107	rs36003887	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.043;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:555,89:0.14:644
chr20	33590096	rs4911167	A	G	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	33591197	rs11481073	A	AG	17840.73	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr20	33592248	rs752448	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.146;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:438,88:0.17:526
chr20	33592474	rs752449	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	33593457	rs3746431	T	C	14171.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr20	33593674	rs3746430	T	C	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	33594226	rs6060151	G	T	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	33595300	rs2273636	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	33595556	.	G	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.888;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:206,44:0.18:250
chr20	33600740	rs1885117	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.435;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:105,17:0.14:122
chr20	33604042	rs3736802	T	C	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:42,161:0.79:203
chr20	33632203	rs11483863	G	GA	334.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.839;QD=8.37;ReadPosRankSum=0.370;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:12,28:0.70:40
chr20	33632600	rs3803938	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	33637606	rs2281626	T	G	14927.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:2,582:1.00:584
chr20	33642732	rs4911462	G	T	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.08;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	33642737	rs4911463	G	A	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=44.10;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr20	33657126	rs1998233	G	A	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	33680713	rs114415475	G	T	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:19,89:0.82:108
chr20	33703134	rs17092297	G	A	298.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr20	33706187	rs6088722	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr20	33713963	rs2295885	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr20	33713975	rs2295886	A	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr20	33719400	rs56289894	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.731;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:453,75:0.14:528
chr20	33730387	rs6120849	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:71,24:0.25:95
chr20	33734905	rs945959	G	C	13194.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr20	33762489	rs2069948	C	T	18237.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:186,811:0.81:997
chr20	33763951	rs2069952	C	T	13103.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:85,580:0.87:665
chr20	33764632	rs9574	C	G	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:30,166:0.85:196
chr20	33839672	rs115895887	T	A	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:44,135:0.75:179
chr20	33855284	rs2425031	T	C	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:85,237:0.74:322
chr20	33857711	rs2254207	A	C	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:94,197:0.68:291
chr20	33859244	rs6058219	G	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,57:0.70:81
chr20	33867697	rs619865	A	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	33874608	rs115996885	G	A	8252.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:103,367:0.78:470
chr20	33874720	rs2425049	C	T	6409.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:95,287:0.75:382
chr20	33874784	rs35560631	A	G	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:111,235:0.68:346
chr20	33894463	rs878639	A	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:43,107:0.71:150
chr20	33961927	rs11908143	A	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr20	33971914	rs4911494	C	T	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr20	33972053	rs4911496	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.427;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:79,21:0.21:100
chr20	33972451	rs369555246	T	TAA	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=61.23;MQRankSum=1.331;QD=15.99;ReadPosRankSum=-0.838;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr20	33974051	rs6141549	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.55;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	33974163	rs6088812	T	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	33981987	rs78363605	T	C	1701.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:21,83:0.80:104
chr20	33997275	rs113465935	GA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.583;QD=1.22;ReadPosRankSum=-1.753;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr20	33997291	rs6142378	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.704;QD=2.64;ReadPosRankSum=-1.472;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr20	33999656	rs11907415	G	T	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:70,174:0.71:244
chr20	33999684	rs144672786	TTG	T	9056.73	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:95,226:0.70:321
chr20	34025756	rs143384	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr20	34053684	rs78158391	T	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr20	34054609	rs224354	G	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr20	34055453	rs5841213	AG	A	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr20	34061578	rs224361	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr20	34062642	rs224362	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:33,83:0.72:116
chr20	34062710	rs224363	C	T	1951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-2.089;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:36,93:0.72:129
chr20	34064501	rs17092679	C	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr20	34079200	rs224373	A	G	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	34079237	rs7263450	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:29,70:0.71:99
chr20	34081427	rs115699391	A	G	375.03	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr20	34087738	rs116454922	A	G	211.88	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr20	34090133	rs77770117	A	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.27;ReadPosRankSum=-0.724;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr20	34091675	rs17092712	G	A	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:64,226:0.78:290
chr20	34095816	rs116453376	A	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:78,150:0.66:228
chr20	34096725	rs2236165	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr20	34097969	rs76529782	C	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr20	34099132	rs78542840	C	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:51,123:0.71:174
chr20	34099165	rs72173955	CT	C	1491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.393;QD=6.43;ReadPosRankSum=0.421;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:94,138:0.59:232
chr20	34116282	rs7261862	T	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:76,202:0.73:278
chr20	34116443	rs76253047	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:17,64:0.79:81
chr20	34116504	rs115700183	G	A	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:50,140:0.74:190
chr20	34117196	rs78324737	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:23,83:0.78:106
chr20	34129808	rs80349223	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr20	34130429	rs116280235	G	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,73:0.78:93
chr20	34130876	rs74332413	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr20	34135266	rs224414	G	T	4816.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:71,219:0.76:290
chr20	34136222	rs77272989	T	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr20	34141954	rs11906910	T	C	463.78	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr20	34142224	rs147243069	CG	C	1327.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr20	34142295	rs76535923	A	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr20	34142743	rs115849175	G	A	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:37,115:0.76:152
chr20	34143800	rs115227756	A	G	10254.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:186,464:0.71:650
chr20	34144107	rs224420	T	C	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	34144746	rs8825	A	G	14803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.43;ReadPosRankSum=1.345;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:143,360:0.72:503
chr20	34144749	rs76270188	G	A	14825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.68;ReadPosRankSum=1.077;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:147,370:0.72:517
chr20	34146726	rs139315990	T	TAGC	4833.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:112,220:0.66:332
chr20	34146742	rs116305880	G	A	9357.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:122,232:0.66:354
chr20	34146754	rs79693337	C	T	8790.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:128,218:0.63:346
chr20	34146802	rs115227448	T	C	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:117,199:0.63:316
chr20	34146950	rs78897011	T	C	9859.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:180,462:0.72:642
chr20	34147136	rs78913502	A	G	19330.77	.	AC=1;AF=0.500;AN=2;DB;DP=1420;set=Intersection	GT:AD:AF:DP	0/1:477,928:0.66:1405
chr20	34147380	rs114972671	G	A	4734.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:85,219:0.72:304
chr20	34147998	rs224424	A	G	10838.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:182,499:0.73:681
chr20	34148091	rs61742206	C	T	8928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.786;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:135,411:0.75:546
chr20	34148425	rs115174744	G	T	4989.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:68,232:0.77:300
chr20	34153164	rs62211663	G	A	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.275;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.652;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:326,83:0.20:409
chr20	34153341	rs224430	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.46;ReadPosRankSum=-0.431;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr20	34164422	rs1557202	T	C	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	34167255	rs116559455	G	A	13849.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:310,652:0.68:962
chr20	34167320	rs74778259	C	T	9176.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:203,420:0.67:623
chr20	34170035	rs6060486	C	G	18972.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr20	34170174	rs6119628	C	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:306,101:0.25:407
chr20	34170316	rs6060487	C	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	34173046	rs1536147	C	T	4192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;ClippingRankSum=0.000;DB;DP=1201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.261;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:874,295:0.25:1169
chr20	34173178	rs6060488	A	G	16524.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr20	34205389	rs3841688	G	GC	1597.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,57:0.79:72
chr20	34208516	rs2425067	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=24.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	34208548	rs10668654	G	GCC	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr20	34215109	.	C	CAAAAAAAAA	492	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=20;HapScore=2;MGOF=91;MMLQ=22;MQ=55.33;NF=6;NR=1;PP=492;QD=70.7142857143;SC=GAGTCCATCTCAAAAAAAAAA;SbPval=0.81;Source=Platypus;TC=23;TCF=18;TCR=5;TR=7;WE=34215117;WS=34215099;set=Platypus	GT:AD:AF:DP	1/0:16,7:0.30:23
chr20	34219994	rs10211771	T	C	19310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=1244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=1.610;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:320,903:0.74:1223
chr20	34262261	rs61612241	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr20	34268874	rs3056722	T	TCCA	1338.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr20	34293120	rs56333545	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	34295819	.	C	T	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=-0.170;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,126:0.77:164
chr20	34302402	rs2425085	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr20	34304783	rs2425090	C	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.673;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr20	34307950	rs59064961	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr20	34309643	rs2425099	T	C	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:27,155:0.85:182
chr20	34312713	rs11699044	C	T	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr20	34324352	.	C	CA	144.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr20	34324456	rs2425120	A	T	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-0.459;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,78:0.71:110
chr20	34324484	rs6058312	A	C	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-0.250;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,78:0.72:109
chr20	34327163	rs142053132	A	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	34328274	rs1538426	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	34328848	rs2425122	C	T	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.497;QD=18.26;ReadPosRankSum=1.219;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:12,57:0.83:69
chr20	34328952	.	C	CTTT	133	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.157;QD=16.62;ReadPosRankSum=-1.534;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr20	34435246	rs374986194	CT	C	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=8.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=1.185;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,68:0.71:96
chr20	34437226	rs73902921	G	A	148.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr20	34443173	rs2425171	G	C	6074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-1.178;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:140,281:0.67:421
chr20	34446395	rs2425178	A	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr20	34457513	rs6121073	G	A	8063.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:179,383:0.68:562
chr20	34505402	rs73618547	G	A	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:41,125:0.75:166
chr20	34526913	rs62211758	C	T	5540.77	.	AC=1;AF=0.500;AN=2;DB;DP=1096;set=Intersection	GT:AD:AF:DP	0/1:737,343:0.32:1080
chr20	34535373	rs6088971	T	C	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:53,159:0.75:212
chr20	34568262	rs10627329	C	CAT	735.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr20	34571846	rs6058388	T	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr20	34611450	rs11477706	GA	G	981.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=1.655;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:26,56:0.68:82
chr20	34743164	rs911128	G	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr20	34743478	rs115130420	G	C	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:28,86:0.75:114
chr20	34782171	rs2295568	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr20	34795372	rs6058434	C	T	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:84,227:0.73:311
chr20	34796309	rs73903002	T	C	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:102,216:0.68:318
chr20	34797610	rs73905303	G	A	8084.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:148,372:0.72:520
chr20	34800363	rs73905304	T	G	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr20	34828459	rs716431	T	C	7581.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:109,359:0.77:468
chr20	34833002	rs73905313	A	G	300.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr20	34858360	rs2425206	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr20	34858434	rs11344327	CT	C	280.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=1.285;QD=7.78;ReadPosRankSum=-1.035;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr20	35064912	rs1275393	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.992;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr20	35068018	rs1275396	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	35090820	rs1275391	C	G	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:193,89:0.32:282
chr20	35127613	.	C	CT	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.216;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:142,38:0.21:180
chr20	35237932	.	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.471;QD=1.83;ReadPosRankSum=1.361;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:149,31:0.17:180
chr20	35288971	rs6028627	A	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.579;QD=5.05;ReadPosRankSum=-0.991;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr20	35293716	rs113477642	A	C	3426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.249;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:74,162:0.69:236
chr20	35422936	rs35707272	G	T	2330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-3.015;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:302,143:0.32:445
chr20	35425733	.	A	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=38.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=2.911;SOR=5.880;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr20	35467713	rs1146250	G	A	7048.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:151,329:0.69:480
chr20	35491033	rs1291099	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	35491551	rs6029806	A	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	35491836	.	G	C	78.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	35507542	rs3748459	G	A	2931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-0.398;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:582,199:0.25:781
chr20	35507621	rs3748461	G	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.713;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:158,52:0.25:210
chr20	35508959	rs1291125	T	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:51,107:0.68:158
chr20	35515825	rs150768309	A	G	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.421;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:197,74:0.27:271
chr20	35555717	.	C	CT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.686;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr20	35559352	rs6072746	A	C	4219.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:48,194:0.80:242
chr20	35569619	rs6030312	G	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr20	35632028	.	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.661;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr20	35684439	.	CA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.829;QD=0.81;ReadPosRankSum=-0.117;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr20	35710283	rs62206488	A	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.333;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr20	35710453	rs1892205	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	35738841	rs1744759	G	C	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	35748039	rs138010782	G	GAAAGA,GAAAGAAAAGA	4784.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;QD=46.45;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,32,71:0.31,0.69:103
chr20	35748894	rs1624888	C	G	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	35749079	rs8120336	T	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	35751985	.	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.282;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr20	35766102	rs16986445	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr20	35766337	rs8115854	A	G	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	35769592	rs1744769	T	C	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr20	35786188	rs1780687	A	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	35807790	rs11467214	G	GCTTATAGACAGGGCCCCGCGGCCGGCACT	2493.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	35808013	rs79999221	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr20	35812526	rs16986470	C	A	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	35826683	rs2076399	T	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	35827028	rs146714866	A	ATT	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	35827682	rs2076398	G	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	35828696	rs6032013	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	35828757	.	ATT	A	1670.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.353;QD=24.57;ReadPosRankSum=1.471;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:5,63:0.93:68
chr20	35835657	rs11698281	C	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	35835889	rs1079657	A	G	7577.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	35838372	rs2272950	T	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	35838591	rs2050091	T	C	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	35838756	rs3817885	G	A	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	35852395	rs2076397	A	C	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	35852450	rs2076396	G	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	35865054	rs4608	C	T	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	35869619	rs2050093	C	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	36022154	rs6018256	T	C	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr20	36022539	rs6018257	T	C	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:66,138:0.68:204
chr20	36030939	rs1885257	G	C	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	36031097	rs2145792	A	G	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr20	36150582	rs149299117	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.86;ReadPosRankSum=-0.447;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	36150600	rs5841264	T	TA	222.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	36375071	rs2297154	T	C	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	36405667	rs6020846	A	G	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:22,87:0.80:109
chr20	36406129	.	T	C	4720.77	.	AC=1;AF=0.500;AN=2;DP=332;set=Intersection	GT:AD:AF:DP	0/1:99,224:0.69:323
chr20	36488508	rs3833308	TCTCA	T	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.826;QD=6.96;ReadPosRankSum=-0.044;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr20	36559941	rs114586486	G	A	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.422;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:417,181:0.30:598
chr20	36561882	rs1998049	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=14.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.991;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:54,22:0.29:76
chr20	36572310	rs11482907	A	AC	1046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=24.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=1.618;SOR=2.370;set=HC	GT:AD:AF:DP	0/1:160,68:0.30:228
chr20	36615416	rs6022212	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	36634618	rs73905522	C	T	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:95,166:0.64:261
chr20	36662255	rs881556	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	36668874	rs2273353	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	36669062	rs73905534	C	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	36669146	rs73905536	A	G	230.89	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr20	36677002	rs2273354	C	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	36678416	rs6097507	A	G	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	36685915	rs2256288	T	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	36688068	rs6022706	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	36718059	rs3746466	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	36758762	rs2229472	G	A	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.958;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:188,82:0.30:270
chr20	36758778	rs2076377	G	C	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr20	36759751	rs111895659	A	AC	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.159;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr20	36759756	.	CCCT	C	123.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.899;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr20	36759757	.	CCT	C	469.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr20	36760995	rs45440600	G	A	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.549;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:237,76:0.24:313
chr20	36766400	rs2281196	G	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr20	36768064	rs2072951	A	G	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:51,135:0.73:186
chr20	36769792	rs2076389	G	A	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.089;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:294,121:0.29:415
chr20	36769839	rs12624511	G	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:198,95:0.32:293
chr20	36770588	rs2076390	C	T	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.328;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:517,191:0.27:708
chr20	36775135	rs2294545	G	A	11981.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:256,551:0.68:807
chr20	36776393	rs45461691	G	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.550;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr20	36793529	rs2076380	G	A	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=1.292;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:326,117:0.26:443
chr20	36859711	rs1205418	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr20	36868191	rs1205433	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-2.196;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:62,21:0.25:83
chr20	36869516	rs1205434	C	A	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=6.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.430;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:127,51:0.29:178
chr20	36870122	rs1205435	T	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:245,77:0.24:322
chr20	36919616	rs6014601	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	36919758	rs10446011	A	G	7160.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:141,339:0.71:480
chr20	36932551	rs1341022	G	C	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=4.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.191;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:236,90:0.28:326
chr20	36932660	rs1341023	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:163,70:0.30:233
chr20	36932676	rs1341024	G	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:145,54:0.27:199
chr20	36937246	rs2066252	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr20	36946848	rs4358188	G	A	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:76,174:0.70:250
chr20	36953097	rs5741806	C	T	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:50,146:0.74:196
chr20	36959318	rs5743533	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	36959353	rs5743534	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	36959566	rs2425357	A	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	36959732	rs6127771	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	36964189	rs5743545	A	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.379;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:98,42:0.30:140
chr20	36965617	rs1131847	A	G	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	36989412	.	ACT	A	1381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=1.589;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:244,55:0.18:299
chr20	36997632	rs1780627	T	C	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-0.057;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:324,145:0.31:469
chr20	36999897	rs2232616	C	T	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.881;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:260,77:0.23:337
chr20	37001631	rs2232617	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.827;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:230,65:0.22:295
chr20	37001761	rs2232618	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:192,71:0.27:263
chr20	37005536	rs745144	T	C	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr20	37062583	rs788347	T	C	10811.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:2,426:1.00:428
chr20	37076554	rs112136513	CT	C	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.319;SOR=1.500;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr20	37076660	rs202206104	GC	G	11570.73	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:89,320:0.78:409
chr20	37078256	rs75909372	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr20	37182420	.	CAAAAAAAAAAAAA	C	798.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.30;ReadPosRankSum=1.501;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:2,20:0.91:22
chr20	37187110	rs36061549	AT	A	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.080;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr20	37210036	rs146845495	C	T	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:44,100:0.69:144
chr20	37214100	rs191220166	C	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.762;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:143,55:0.28:198
chr20	37257590	rs6070809	C	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	37258021	.	G	A	771.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr20	37258110	rs145627399	C	T	5985.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:79,260:0.77:339
chr20	37263489	rs16987449	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr20	37266205	rs6026964	C	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr20	37272209	rs62201576	C	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr20	37272390	rs115554363	A	T	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.081;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:491,128:0.21:619
chr20	37277153	rs220527	G	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	37277269	rs6092810	C	T	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-1.693;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:42,97:0.70:139
chr20	37277271	rs220526	C	T	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.89;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	37278558	rs6027039	C	T	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:94,201:0.68:295
chr20	37278569	rs6027040	A	C	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:75,185:0.71:260
chr20	37278612	rs220522	T	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	37278702	.	A	G	356.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr20	37278823	rs220521	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr20	37278946	rs220520	T	C	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	37279255	rs220519	C	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	37279376	rs67738971	TGACGA	T	5893.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:46,145:0.76:191
chr20	37279458	rs6015551	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr20	37377139	rs2254105	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.091;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr20	37378982	rs67064795	A	AGT	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:60,12:0.17:72
chr20	37383517	rs2757520	C	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.511;QD=3.34;ReadPosRankSum=-0.807;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr20	37383640	rs2748663	T	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.014;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:462,160:0.26:622
chr20	37383841	rs2757521	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr20	37394795	rs3215704	AT	A	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr20	37395112	rs2243520	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr20	37395979	.	AT	A	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.970;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr20	37396120	rs2245231	A	G	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:307,114:0.27:421
chr20	37396262	rs2245237	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:114,50:0.30:164
chr20	37524432	rs6028184	C	T	3071.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.199;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=13.369;MLEAC=2;MLEAF=1.000;MQ=58.58;MQRankSum=8.691;QD=31.03;ReadPosRankSum=2.513;SOR=3.623;set=HC	GT:AD:AF:DP	1/1:7,92:0.93:99
chr20	37524435	.	T	TC	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=1.204;QD=7.49;ReadPosRankSum=-0.721;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:63,24:0.28:87
chr20	37534582	rs12626105	A	G	8315.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	37534665	rs4812332	C	T	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr20	37547374	rs4812336	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	37570725	rs3752293	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.508;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:202,54:0.21:256
chr20	37591198	rs974560	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr20	37635027	rs3752298	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr20	37643659	rs3764703	T	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:101,43:0.30:144
chr20	37647401	.	C	T	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.335;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:169,56:0.25:225
chr20	37647466	rs36025205	C	T	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.292;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:262,88:0.25:350
chr20	37652496	rs114614898	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.369;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr20	37653766	rs75878634	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr20	37667222	rs114099416	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr20	39609426	rs4812473	C	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	39634704	rs73257868	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.044;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr20	39690342	rs1997833	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr20	39704995	rs6072262	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr20	39788855	rs2076148	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	39792063	rs2228246	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-1.853;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:395,94:0.19:489
chr20	39794489	rs6124323	G	A	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	39797465	rs753381	T	C	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr20	39813729	rs2664537	G	A	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-3.267;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:249,71:0.22:320
chr20	39830122	rs2235367	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	39832628	rs17265513	T	C	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:211,80:0.27:291
chr20	39974316	rs6129820	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr20	39978564	rs6029646	G	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr20	39985847	rs6072350	T	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.870;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr20	39986085	rs12625565	A	C	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.133;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:161,58:0.26:219
chr20	39990614	rs2235592	C	T	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.129;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:316,97:0.23:413
chr20	39990700	rs41278104	T	C	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.103;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:493,184:0.27:677
chr20	39991144	rs41307177	A	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.217;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:219,65:0.23:284
chr20	39991171	rs61739307	G	A	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.081;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:257,84:0.25:341
chr20	40045573	rs742433	G	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	40049998	rs41278116	A	T	6775.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:121,311:0.72:432
chr20	40066117	rs2179452	T	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	40076397	rs909883	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	40076438	rs2294569	G	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:43,103:0.71:146
chr20	40076509	rs909882	T	C	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.754;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:180,72:0.29:252
chr20	40084399	rs3746540	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	40116467	rs4812516	C	T	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:51,158:0.76:209
chr20	40120211	rs4810321	C	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr20	40126679	rs2294564	T	A	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	40179781	rs4812524	A	G	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.105;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr20	40179909	rs6129863	G	A	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:63,190:0.75:253
chr20	40179920	rs6072417	C	T	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	40713532	rs56030532	G	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.243;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:252,62:0.20:314
chr20	40714307	rs3092662	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	40714479	rs2016647	G	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-0.629;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:157,47:0.23:204
chr20	40714524	rs722898	C	G	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	40714539	rs1569547	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.280;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr20	40714540	rs1569548	G	C	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:26,88:0.77:114
chr20	40733082	rs2076247	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	40743829	rs2076248	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,38:0.25:150
chr20	40979160	rs2071854	T	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr20	40980987	rs6065464	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr20	41100774	rs760704	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr20	41306488	rs111229158	G	GA	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.733;QD=12.45;ReadPosRankSum=-1.566;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr20	41306600	rs2425516	A	G	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:53,131:0.71:184
chr20	41306899	rs11368567	C	CA	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr20	41514406	rs59601716	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr20	41514689	.	C	CTTTATA	883.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.000;QD=15.50;ReadPosRankSum=3.763;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr20	41514690	rs60684890	C	T	2175.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.49;MQRankSum=1.703;QD=31.08;ReadPosRankSum=-1.589;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,46:0.66:70
chr20	41818289	rs2867655	C	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	42089141	.	T	C	909.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr20	42089511	rs2235611	T	C	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	42157237	rs2071972	C	T	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	42195554	rs112275291	G	GGGAC	1992.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr20	42195863	rs4812721	G	C	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	42196089	rs2071973	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr20	42196550	rs2067061	T	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,78:0.75:104
chr20	42196738	rs6017119	C	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr20	42199704	rs11467250	GGTGT	G,GGTGGGTGGGTGTGT	825.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=78;set=Intersection	GT:AF:DP	1/2:0.34,0.39:61
chr20	42199925	rs3127060	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr20	42200936	rs72626512	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr20	42204771	rs73907841	A	G	3726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.636;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:67,162:0.71:229
chr20	42205061	rs763227	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-1.021;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr20	42208522	rs2301483	T	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	42208623	rs35941643	G	A	5198.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:85,239:0.74:324
chr20	42213751	rs73907844	C	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr20	42225114	rs2664519	G	A	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	42232587	rs73907863	C	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr20	42242700	rs4473450	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	42249398	rs1555348	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	42249479	rs11483104	C	CT	3221.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=-0.537;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:21,168:0.89:189
chr20	42252537	rs149821266	G	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:220,65:0.23:285
chr20	42264502	rs6031007	G	A	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	42264726	rs2273523	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	42265700	rs6065638	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	42265966	rs6031008	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr20	42275499	rs393115	G	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	42302201	rs826949	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr20	42302371	rs826950	C	T	11844.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:2,454:1.00:456
chr20	42310509	rs442143	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	42310526	rs73907901	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr20	42328639	rs285162	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	42328749	rs285163	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	42331457	rs2070235	A	G	12025.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:260,557:0.68:817
chr20	42333676	rs56285825	C	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr20	42341705	rs7660	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:65,183:0.74:248
chr20	42343685	rs73911014	G	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:44,107:0.71:151
chr20	42574442	rs4812769	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.855;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr20	42668052	rs150271538	T	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr20	42697187	rs41283266	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.190;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr20	42697651	rs6017258	G	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.416;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.638;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:98,41:0.29:139
chr20	42743454	rs6093935	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:147,46:0.24:193
chr20	42744265	rs56061946	G	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.447;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr20	42745115	rs6073336	T	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr20	42747247	rs3810510	C	T	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	42806429	rs2064381	A	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	42814931	rs6031442	T	C	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	42815190	rs1883790	G	A	19311.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr20	42825929	rs8268	C	T	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	42826350	rs9346	A	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	42826379	rs11274	C	T	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	42886707	.	G	T	195.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr20	42891809	rs2293	C	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	42892151	rs4810415	C	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	42907542	rs1884607	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	42939750	rs6073401	T	C	31921.77	.	AC=2;AF=1.00;AN=2;DB;DP=1242;set=Intersection	GT:AD:AF:DP	1/1:0,1227:1.00:1227
chr20	42939885	rs3746569	T	A	9588.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr20	42965863	rs3746570	C	T	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	42966025	rs1884612	T	C	15642.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr20	42972275	rs4812826	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	43043095	rs3212195	G	A	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:31,129:0.81:160
chr20	43052570	rs2273618	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	43058018	rs3746574	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	43058080	rs114265655	G	A	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:43,142:0.77:185
chr20	43058096	rs3746575	C	G	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	43090929	rs11482024	T	TA	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr20	43117986	rs59069332	C	G	11204.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:205,509:0.71:714
chr20	43140062	rs113094472	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr20	43254376	rs73300310	A	C	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:41,111:0.73:152
chr20	43254490	rs244074	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	43264927	rs394105	C	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	43343895	rs376618937	TGTGTGTGAGC	T	196.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=-0.497;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr20	43343903	rs1980801	A	T	203.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.506;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.98;ReadPosRankSum=0.482;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr20	43343905	rs1980802	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.98;ReadPosRankSum=0.959;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr20	43343908	rs1980803	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	43343930	rs1980804	T	G	782.78	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	43348735	rs2296530	C	A	5973.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:86,269:0.76:355
chr20	43353507	rs144796244	G	A	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=-0.850;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:28,95:0.77:123
chr20	43356156	rs1061098	C	T	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,82:0.77:106
chr20	43378770	rs1111032	A	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:48,105:0.69:153
chr20	43379264	rs6073538	A	C	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:85,196:0.70:281
chr20	43379454	rs13042905	T	C	4408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-1.587;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:111,220:0.66:331
chr20	43560914	rs3746582	T	C	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:167,74:0.31:241
chr20	43561654	rs12798	C	T	3071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.628;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:602,119:0.17:721
chr20	43561660	rs12031	A	G	3160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.962;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:611,124:0.17:735
chr20	43565559	rs3746583	G	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.890;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:144,43:0.23:187
chr20	43565782	rs77088517	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr20	43566518	rs6031872	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr20	43566787	rs11780	A	G	9461.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr20	43566863	rs2273357	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:119,42:0.26:161
chr20	43572217	rs1804644	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr20	43577644	rs1884440	C	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	43586927	rs77840809	C	T	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:54,148:0.73:202
chr20	43588802	rs2234200	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	43588977	rs8113914	C	A	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.850;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:298,100:0.25:398
chr20	43600673	rs6130717	C	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-1.031;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	43623633	.	G	GT	123.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.37;ReadPosRankSum=-2.241;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr20	43623658	rs6017460	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.053;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr20	43629135	rs17420378	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.239;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:150,49:0.25:199
chr20	43681951	rs2284275	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	43803725	rs1983649	T	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr20	43926536	rs2227274	G	T	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:93,214:0.70:307
chr20	43926573	rs2227275	C	T	6480.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:114,297:0.72:411
chr20	43929659	rs2076023	G	A	6645.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:109,301:0.73:410
chr20	43933196	rs2233093	C	T	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.399;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:252,79:0.24:331
chr20	43933366	rs141367880	C	G	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=1.602;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:370,135:0.27:505
chr20	43940112	rs2743327	C	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	43964407	rs2072791	G	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	43964707	rs3830725	C	CT	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr20	43976875	.	G	GC,GCC	6163.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=5.774;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.64;ReadPosRankSum=-0.078;SOR=1.183;set=HC	GT:AD:AF:DP	1/2:8,113,102:0.51,0.46:223
chr20	44038574	rs1127497	A	G	2670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.878;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:420,172:0.29:592
chr20	44048065	rs3092108	C	CG	9659.73	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:167,433:0.72:600
chr20	44049916	rs3092450	T	TC	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr20	44053069	rs2741566	T	C	31681.77	.	AC=2;AF=1.00;AN=2;DB;DP=1212;set=Intersection	GT:AD:AF:DP	1/1:0,1191:1.00:1191
chr20	44054349	rs707577	T	C	23464.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	1/1:0,904:1.00:904
chr20	44141201	rs11470736	TCACACA	T	1757.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	44141331	rs6032259	A	G	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	44170712	rs11594	C	A	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	44238741	rs2245898	T	G	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	44259490	rs1487323	G	A	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr20	44259673	rs1487322	G	T	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr20	44259724	rs80157014	C	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr20	44314609	rs232729	A	G	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	44331043	rs6032445	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	44333052	rs980984	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	44333326	rs11361717	CT	C	515.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.907;MLEAC=2;MLEAF=1.000;MQ=60.91;MQRankSum=0.993;QD=11.45;ReadPosRankSum=0.570;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:7,38:0.84:45
chr20	44334394	rs232291	A	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	44334588	rs232290	C	G	9425.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	44350931	rs232262	C	G	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	44352620	rs6017667	G	A	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:1,446:1.00:447
chr20	44352740	rs1487317	G	A	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	44354087	rs6032473	G	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	44354372	rs6032474	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	44354387	rs232259	A	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.53;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	44405941	rs116194659	A	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr20	44429633	rs11458259	C	CA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.941;QD=0.44;ReadPosRankSum=0.202;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:108,24:0.18:132
chr20	44463752	rs45528233	C	T	10814.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:211,507:0.71:718
chr20	44538269	rs11569636	G	T	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:113,197:0.64:310
chr20	44538427	rs378114	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr20	44538484	rs435306	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr20	44540178	rs394643	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:236,93:0.28:329
chr20	44577895	rs150750750	AGG	A	2598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.573;QD=7.30;ReadPosRankSum=1.631;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:273,83:0.23:356
chr20	44578674	rs16990951	T	A	7249.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:121,323:0.73:444
chr20	44578776	rs6065910	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	44578844	rs73622634	C	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr20	44578961	rs3746503	A	G	6527.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:105,304:0.74:409
chr20	44581348	rs3746504	G	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:161,64:0.28:225
chr20	44586036	rs3746506	G	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	44586694	rs11480828	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-2.203;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr20	44588109	rs3746507	G	A	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	44592364	rs3746511	C	T	7702.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:111,339:0.75:450
chr20	44592636	rs3746512	C	T	9271.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:201,430:0.68:631
chr20	44596207	rs6032606	C	G	6308.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:137,286:0.68:423
chr20	44596854	rs3737063	G	A	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.738;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:585,203:0.26:788
chr20	44598023	rs115355976	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr20	44599839	rs6017715	G	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.422;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	44600680	rs74633215	C	A	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:34,129:0.79:163
chr20	44638352	rs3918250	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr20	44638781	rs3918251	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	44640225	rs17576	A	G	19887.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	1/1:1,813:1.00:814
chr20	44640391	rs3918254	C	T	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.343;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:192,66:0.26:258
chr20	44642406	rs2250889	G	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	44642833	rs13969	A	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr20	44673546	rs2297197	C	G	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.836;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:157,53:0.25:210
chr20	44674743	rs2297199	A	C	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	44675136	rs3848727	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	44678348	rs6032635	G	A	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr20	44684978	rs2297201	C	T	6417.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:140,293:0.68:433
chr20	44691350	rs1537028	T	G	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:110,256:0.70:366
chr20	44746982	rs1883832	T	C	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	44756943	.	C	CT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.178;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr20	44806875	rs2281335	G	A	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:67,183:0.73:250
chr20	44839203	rs8124843	C	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:189,63:0.25:252
chr20	44839322	rs2425785	G	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	44856463	rs733379	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	44979641	rs4810503	TA	GC	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	44983517	rs12480667	G	A	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.187;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:188,81:0.30:269
chr20	44985307	rs911435	T	G	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	44987318	rs1044369	C	G	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.454;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:387,136:0.26:523
chr20	44996182	rs2257495	A	G	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr20	44998791	rs2261964	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	45003326	rs2261213	A	G	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	45003788	rs2257545	T	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	45169805	rs2411	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	45169861	rs847080	C	A	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:45,133:0.75:178
chr20	45170213	rs847078	A	G	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr20	45173910	rs202395	T	C	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.299;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:231,107:0.32:338
chr20	45174026	rs202396	A	C	7736.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:2,307:0.99:309
chr20	45174990	rs7274096	G	C	553.89	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr20	45179101	rs73307274	A	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.395;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:355,120:0.25:475
chr20	45188971	rs910062	C	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	45192249	.	A	AAGAGAGAG,AAGAGAG	371	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=44;MMLQ=21;MQ=58.93;NF=2,2;NR=21,21;PP=371,307;QD=17.652173913;SC=CGACCACAGCAAGAGGGAGAG;SbPval=0.38;Source=Platypus;TC=35;TCF=2;TCR=33;TR=23,23;WE=45192262;WS=45192239;set=Platypus	GT:AF:DP	0/1:0.66:35
chr20	45192253	rs59207395	G	GA	4986.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=39.27;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	45192254	rs35374760	G	GAGAGA,GAGAGAGA	3724.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.64;QD=49.66;SOR=0.906;set=HC	GT:AD:AF:DP	1/2:0,45,30:0.60,0.40:75
chr20	45194904	rs202391	C	G	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:197,100:0.34:297
chr20	45195274	rs56923216	C	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr20	45204266	rs1880898	G	A	4952.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:103,228:0.69:331
chr20	45212384	rs113225984	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.499;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr20	45212432	rs115919470	G	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=2.140;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr20	45212435	rs114564770	G	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=1.299;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr20	45212455	rs389905	T	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.017;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr20	45214289	rs116351524	G	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.115;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:122,28:0.19:150
chr20	45220862	rs11469301	GCATACATA	G	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr20	45225018	rs3092034	A	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	45229062	rs146953211	AAAGG	A	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.244;QD=9.11;ReadPosRankSum=2.066;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr20	45229389	rs77000810	A	C	214.31	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr20	45355648	rs61516789	C	T	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=1.521;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:560,181:0.24:741
chr20	45358264	.	GTTTTTTTT	G	526	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=20;HapScore=2;MGOF=6;MMLQ=20;MQ=45.86;NF=0;NR=2;PP=526;QD=264.5;SC=GGCACTATGAGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=2;WE=45358279;WS=45358254;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr20	45362399	rs6018008	A	G	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.325;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:243,70:0.22:313
chr20	45618620	rs6094542	T	C	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-0.028;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:28,115:0.80:143
chr20	45629941	rs3746492	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	45717954	rs866937	C	T	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.368;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:547,175:0.24:722
chr20	45725959	rs947018	A	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	45795744	rs3091782	T	C	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.635;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:107,48:0.31:155
chr20	45797661	rs6018312	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr20	45797749	rs11474389	T	TTC	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:145,45:0.24:190
chr20	45797883	rs3091653	C	T	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.736;QD=3.47;ReadPosRankSum=0.850;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:212,71:0.25:283
chr20	45798014	rs3091985	C	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr20	45801340	rs6090632	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=2.345;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	45801573	rs147058152	TCAGTGTCCCTGCTGTGC	T	4754.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	45809652	rs2235907	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	45811860	rs8124918	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,54:0.57:94
chr20	45816594	rs3818012	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr20	45816639	rs3818013	A	G	4166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.14;ReadPosRankSum=-2.050;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:40,103:0.72:143
chr20	45816649	rs3818014	C	T	4664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.06;ReadPosRankSum=-1.053;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:53,126:0.70:179
chr20	45841211	rs910188	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr20	45841255	rs910189	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:87,25:0.22:112
chr20	45853037	rs2664544	A	G	11095.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr20	45856045	rs1124178	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	45865027	rs6018354	C	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,22:0.23:95
chr20	45867852	rs2275801	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:87,21:0.19:108
chr20	45878227	rs6512435	T	C	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.770;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:106,39:0.27:145
chr20	45891189	rs2294560	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr20	45905651	rs3746485	T	C	120.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.16;ReadPosRankSum=0.180;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr20	45905654	.	TA	T	20	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5014;HP=19;HapScore=4;MGOF=19;MMLQ=19;MQ=60.92;NF=1;NR=1;PP=20;QD=11.5;SC=CTTATTCTATTAAAAAAAAAA;SbPval=0.36;Source=Platypus;TC=5;TCF=1;TCR=4;TR=2;WE=45905662;WS=45905641;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr20	45918824	rs148056610	G	A	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:53,149:0.74:202
chr20	45923383	rs2076402	G	T	7008.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:127,320:0.72:447
chr20	45938743	rs41282804	G	A	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	45976869	rs367646500	CT	C	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr20	45978591	rs5841687	CA	C	9129.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr20	46264028	rs115757033	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:119,54:0.31:173
chr20	46267950	rs4810648	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	46268008	rs2076548	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr20	46268493	rs2076546	A	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.291;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:181,51:0.22:232
chr20	46279613	rs2745724	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.731;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr20	46279836	rs147879509	ACAG	A	2563.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:343,91:0.21:434
chr20	46282112	.	ATTTT	A	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=4.273;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.313;QD=7.38;ReadPosRankSum=1.161;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:92,48:0.34:140
chr20	46287012	rs444271	C	G	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	46288566	rs2294891	T	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr20	46292149	rs2235734	T	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr20	46365571	rs3810526	A	G	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:91,241:0.73:332
chr20	47244523	rs8121156	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	47244598	rs6095217	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	47249189	rs4413212	T	C	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr20	47253043	rs11553083	G	A	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:74,241:0.77:315
chr20	47253150	rs2664521	T	C	14819.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr20	47256300	rs6019339	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.822;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:84,17:0.17:101
chr20	47256479	rs4611698	T	C	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.512;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:129,31:0.19:160
chr20	47258613	rs4596036	G	A	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.985;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:258,108:0.30:366
chr20	47260936	rs6019344	A	G	15608.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:4,622:0.99:626
chr20	47261017	rs6066802	T	C	2896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.710;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:450,187:0.29:637
chr20	47269282	rs113507899	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr20	47272778	rs7269602	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr20	47272963	rs3091871	G	GC	18638.73	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:6,724:0.99:730
chr20	47274733	rs62621889	T	C	6652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=1404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.617;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:965,429:0.31:1394
chr20	47276381	rs2294910	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.694;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr20	47276639	rs11086257	A	AT	1191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.969;QD=5.14;ReadPosRankSum=0.791;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:184,48:0.21:232
chr20	47283059	rs149151112	TTTATTA	T	1488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.220;QD=25.67;ReadPosRankSum=0.206;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr20	47305109	rs11086260	C	CA	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr20	47307618	rs3746820	G	A	3942.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:101,189:0.65:290
chr20	47309162	rs140171384	GCAGGCAGGGCT	G	2813.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr20	47317276	rs35913794	C	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr20	47361519	rs3746816	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.658;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr20	47567739	rs73264237	C	A	128.78	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	47580347	rs2295031	A	G	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.568;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:194,57:0.23:251
chr20	47585642	rs3764683	T	C	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:46,129:0.74:175
chr20	47589122	rs2273102	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr20	47606027	rs73909765	G	A	5844.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:120,265:0.69:385
chr20	47610896	rs2295033	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.419;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr20	47615088	.	AG	A	200.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr20	47621554	rs4810910	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:30,138:0.82:168
chr20	47621791	rs112315534	A	G	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:49,137:0.74:186
chr20	47626736	rs2295579	A	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr20	47626847	rs2295580	T	C	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:266,118:0.31:384
chr20	47628368	rs11473356	A	ATG	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:201,46:0.19:247
chr20	47628434	rs2273531	T	C	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-1.267;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:458,137:0.23:595
chr20	47630590	rs116241004	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr20	47635339	rs9631141	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:64,24:0.27:88
chr20	47639464	rs2426106	G	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr20	47639737	rs7270848	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.985;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr20	47645002	rs73623293	G	GT	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr20	47649510	.	C	CA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.916;QD=0.97;ReadPosRankSum=1.262;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:191,55:0.22:246
chr20	47649525	rs7263488	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:209,81:0.28:290
chr20	47675176	rs2064853	T	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-0.539;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr20	47679963	rs6019621	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-1.147;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr20	47683568	rs60161542	CAAAAAAAAAAA	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.61;ReadPosRankSum=-1.803;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr20	47691211	rs2075676	C	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.513;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:132,39:0.23:171
chr20	47693690	rs11439721	C	CTT	431.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.603;QD=18.77;ReadPosRankSum=0.725;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr20	47701765	rs1885163	T	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-1.118;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:213,48:0.18:261
chr20	47713063	rs17632	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr20	47732267	rs112718177	CG	C	6316.73	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:84,184:0.69:268
chr20	47739814	rs2295714	C	T	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:55,164:0.75:219
chr20	47770443	rs3092191	CAAA	C	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.892;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:108,37:0.26:145
chr20	47775441	.	A	AAAATAAAT	5312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.332;QD=25.06;ReadPosRankSum=2.140;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:75,137:0.65:212
chr20	47775474	rs11480966	A	AC	7172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.266;QD=17.00;ReadPosRankSum=1.290;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:147,275:0.65:422
chr20	47839653	rs2273146	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:40,99:0.71:139
chr20	47842853	rs238162	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr20	47845220	rs238165	T	A	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:34,111:0.77:145
chr20	47846586	rs171130	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr20	47846598	rs6019703	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.211;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr20	47850182	rs238148	C	T	4210.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:97,196:0.67:293
chr20	47852822	rs238152	G	A	7735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.583;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:138,363:0.72:501
chr20	47855745	rs116472698	G	T	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:80,184:0.70:264
chr20	47856037	rs238156	T	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr20	47858679	rs61736447	G	A	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:131,321:0.71:452
chr20	47859015	rs238204	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr20	47859254	rs71186444	CTTTTTTTTTTTTTT	C	3351.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:25,87:0.78:112
chr20	47863409	rs144647523	ATT	A,AT	1711.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.611;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.01;MQRankSum=0.196;QD=19.90;ReadPosRankSum=-0.602;SOR=1.103;set=HC	GT:AD:AF:DP	1/2:6,61,19:0.71,0.22:86
chr20	47865372	rs238208	G	A	16406.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:2,618:1.00:620
chr20	47865509	rs238209	G	A	12028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.035;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:187,544:0.74:731
chr20	47866411	rs6063378	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr20	47872327	rs238220	A	G	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:62,134:0.68:196
chr20	47872377	rs238221	C	G	2895.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:67,136:0.67:203
chr20	47874239	rs11295162	CT	C	2261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.802;QD=6.37;ReadPosRankSum=-0.944;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:133,222:0.63:355
chr20	47881581	rs6063380	A	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	47882893	rs238178	T	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.56;ReadPosRankSum=0.295;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr20	47886684	rs57950	G	A	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	47892270	rs238191	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr20	47895696	rs115176866	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr20	47948503	rs6012644	G	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.659;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:116,53:0.31:169
chr20	47948677	rs1972189	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-1.954;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr20	47951040	.	CT	C	261.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-0.387;QD=6.71;ReadPosRankSum=2.452;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr20	47951110	.	C	CTT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-0.000;QD=15.25;ReadPosRankSum=-1.046;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	47951114	rs113891546	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.262;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr20	47951126	rs79746633	G	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-0.000;QD=15.85;ReadPosRankSum=-1.043;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	48099637	.	CTT	C	1423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.560;QD=15.82;ReadPosRankSum=0.467;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:29,61:0.68:90
chr20	48130628	rs6019879	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr20	48140727	rs5627	T	C	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.539;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:554,155:0.22:709
chr20	48156278	rs6012687	G	T	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	48184463	rs575322	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	48184682	.	G	GCGGGGCTGGCGGGGCTGA	412.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr20	48184734	rs7262428	G	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	48184839	rs566544	TT	GG	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48184857	rs566508	C	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	48184871	rs566468	A	G	736.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	48184872	rs566466	T	G	736.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	48257149	rs421801	C	T	7467.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:157,352:0.69:509
chr20	48259034	rs2235855	A	G	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:79,195:0.71:274
chr20	48263636	rs73910580	A	G	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.433;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:28,83:0.75:111
chr20	48273299	rs4810968	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	48300990	rs6019972	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr20	48301146	rs6512586	G	A	7748.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:183,373:0.67:556
chr20	48330030	rs12329570	G	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,83:0.73:113
chr20	48429316	rs11281224	A	AGACGGAGG	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.77;ReadPosRankSum=0.648;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr20	48456238	rs2025958	G	A	175.85	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr20	48467560	rs532237	G	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.544;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr20	48479356	rs3092598	TATGA	T	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48491258	rs542234	T	G	3363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.760;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:713,241:0.25:954
chr20	48503461	rs7270636	T	C	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	48522330	rs495337	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.808;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:160,48:0.23:208
chr20	48522585	rs492702	G	A	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.581;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:146,57:0.28:203
chr20	48524827	rs2769982	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-2.035;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:172,61:0.26:233
chr20	48561893	rs4810993	A	G	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	48562083	rs11473738	G	GTTGGACACC	4254.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	48562797	rs34310744	C	CT	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-1.507;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:98,40:0.29:138
chr20	48568503	rs2281216	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.810;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr20	48599469	rs200281639	CACCA	C	170.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.025;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.07;ReadPosRankSum=-0.000;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr20	48599473	rs113842434	AC	A	37.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr20	48599549	rs4647954	T	C	6768.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:118,317:0.73:435
chr20	48599561	rs4647955	G	C	8141.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:144,374:0.72:518
chr20	48600475	rs34261470	C	T	5952.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:122,271:0.69:393
chr20	48600557	rs4647959	T	C	6538.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:146,300:0.67:446
chr20	48600631	rs4647958	T	C	11115.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:257,521:0.67:778
chr20	48600809	rs1063210	G	A	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:75,220:0.75:295
chr20	48700947	rs67366514	T	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:297,144:0.33:441
chr20	48701351	.	CT	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-1.923;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:57,29:0.34:86
chr20	48701428	.	CTTTTTTTTTTTTT	TTTTTTTTTTTTTT	2997	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=21;HapScore=3;MGOF=12;MMLQ=27;MQ=57.0;NF=0,0;NR=19,2;PP=2997,38;QD=20;SC=GAAAAGCAGTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=19,2;WE=48701448;WS=48701416;set=Platypus	GT:AD:AF:DP	0/1:26,2:0.07:28
chr20	48701428	rs200222788	CTTTTTTTTTTTTT	C	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr20	48713049	rs6012831	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	48729677	rs126907	C	G	12459.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.64;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr20	48746189	rs6122878	C	T	6067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=2.770;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:136,286:0.68:422
chr20	48747697	rs55894522	T	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	48760238	rs10574784	CTT	C	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=1.290;QD=5.16;ReadPosRankSum=2.353;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:58,23:0.28:81
chr20	48768040	rs73913833	T	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.997;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr20	48768049	rs59042493	T	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-2.041;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr20	48770156	rs2026757	A	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.365;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr20	48770159	rs232733	T	C	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	48892144	rs11086306	GT	G	2577.52	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:21,146:0.87:167
chr20	48893973	rs6095855	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr20	48894674	rs13044283	A	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.705;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:138,43:0.24:181
chr20	48894872	rs3761180	T	C	13351.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr20	49181345	rs16995294	T	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	49191228	rs1885177	A	C	10596.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	49194866	rs3215684	A	AT	2982.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	49211311	rs6091179	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr20	49214156	rs6020624	A	G	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.368;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:313,120:0.28:433
chr20	49224840	rs79846040	G	T	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr20	49224898	rs75465585	C	T	4279.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:63,180:0.74:243
chr20	49225609	rs80039159	G	A	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:41,116:0.74:157
chr20	49227294	rs4811083	T	C	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	49227544	rs144167038	G	GGGCTTAGTGCCGGGCC	6177.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr20	49227895	rs41303813	C	T	348.03	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr20	49247243	rs2426178	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:341,131:0.28:472
chr20	49247439	rs2426179	G	A	4109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.671;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:654,264:0.29:918
chr20	49366229	rs61730982	C	T	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:84,185:0.69:269
chr20	49411573	.	C	T	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=5.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=1.491;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:17,70:0.80:87
chr20	49434669	rs5841815	TA	T	1076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.840;QD=6.99;ReadPosRankSum=2.470;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:56,98:0.64:154
chr20	49434829	rs11283878	T	TGCCTGGAAGGCGTGGGTTTAG	3996.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=5.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=0.319;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:29,98:0.77:127
chr20	49448400	rs76536859	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr20	49448800	rs11483292	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.104;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr20	49492559	.	C	T	2489.77	.	AC=1;AF=0.500;AN=2;DP=157;set=Intersection	GT:AD:AF:DP	0/1:35,116:0.77:151
chr20	49507892	rs761240	T	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	49508683	rs1062651	G	A	11321.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:190,493:0.72:683
chr20	49551779	.	T	TAA	1573.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.206;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=2.332;QD=19.92;ReadPosRankSum=2.171;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:28,51:0.65:79
chr20	49551780	rs60224379	T	TA,A	2304.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.91;MQRankSum=0.742;QD=29.55;ReadPosRankSum=2.593;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:5,22,51:0.28,0.65:78
chr20	49575334	rs2281282	A	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	49621176	rs149675848	G	T	7641.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:151,351:0.70:502
chr20	49621399	rs4811110	G	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.975;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:76,29:0.28:105
chr20	50008006	rs71192523	A	AG	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.10;ReadPosRankSum=1.981;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	50015107	rs11468602	TA	T	158.75	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr20	50015300	rs11478012	GA	G	1047.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr20	50071258	rs228840	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,23:0.27:85
chr20	50092027	rs6013193	T	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:48,96:0.67:144
chr20	50140039	rs35195881	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.747;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:149,48:0.24:197
chr20	50178965	rs2869427	G	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr20	50223975	rs2273090	G	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr20	50224161	rs2273089	C	T	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-2.769;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:115,33:0.22:148
chr20	50224206	rs3818004	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-2.121;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr20	50225206	rs3827032	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr20	50225235	rs6021312	G	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr20	50230462	rs2235863	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr20	50238545	rs2235862	A	G	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:136,86:0.39:222
chr20	50241714	rs2235859	C	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr20	50244098	rs2426317	T	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-3.015;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:130,54:0.29:184
chr20	50255762	rs2426333	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	50255849	rs6063682	A	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.690;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:176,54:0.23:230
chr20	50256107	rs2426334	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	50273531	rs57906305	G	A	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:106,177:0.63:283
chr20	50273749	rs6021355	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.251;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:180,39:0.18:219
chr20	50286484	rs5841856	T	TA	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.581;QD=3.07;ReadPosRankSum=-0.118;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:94,41:0.30:135
chr20	50287553	rs6013248	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.814;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.740;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr20	50287790	rs2255342	A	G	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.371;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:587,180:0.23:767
chr20	50287925	rs2255358	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:99,32:0.24:131
chr20	50290654	rs6091346	T	C	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.222;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:196,67:0.25:263
chr20	50292763	rs11339305	GA	G	2226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.420;QD=7.79;ReadPosRankSum=-0.948;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:121,165:0.58:286
chr20	50305755	rs6067898	G	A	4402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.680;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:386,140:0.27:526
chr20	50305761	rs6067899	G	A	4281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.200;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:346,129:0.27:475
chr20	50307372	rs45585740	G	C	8112.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:155,386:0.71:541
chr20	50310466	rs6021389	T	C	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.425;QD=3.64;ReadPosRankSum=-0.958;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:342,119:0.26:461
chr20	50310483	rs143733288	A	ATC	11394.73	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:2,435:1.00:437
chr20	50310709	rs6013259	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,42:0.34:123
chr20	50314078	rs13044892	G	A	6293.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:134,290:0.68:424
chr20	50314200	rs1205690	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr20	50329416	rs1205698	T	C	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr20	50329704	rs1205699	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.722;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:114,35:0.23:149
chr20	50342285	rs1205708	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:30,90:0.75:120
chr20	50342555	rs1205709	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	50346290	rs11280859	A	AACATG	3791.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:42,88:0.68:130
chr20	50346354	rs8118392	G	A	6504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.183;QD=16.38;ReadPosRankSum=-0.443;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:102,295:0.74:397
chr20	50346538	rs62226743	C	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr20	50384821	rs3746416	A	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.531;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:162,57:0.26:219
chr20	50408482	rs6013281	A	G	11289.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr20	50705211	rs2273382	A	G	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	50705584	rs973341	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	50713652	rs10715971	TA	T	9221.73	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:14,457:0.97:471
chr20	50713851	rs116267345	G	A	6892.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:117,319:0.73:436
chr20	50713992	rs11309611	AT	A	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.260;QD=5.46;ReadPosRankSum=2.133;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr20	50721106	rs62216874	G	C	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:60,157:0.72:217
chr20	50734238	rs67904269	T	C	4112.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:92,200:0.68:292
chr20	50734360	rs77159737	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr20	50769225	rs6096798	C	A	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-1.514;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:376,106:0.22:482
chr20	50781298	.	T	TA	995.73	.	AC=1;AF=0.500;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr20	50781709	rs6126487	T	C	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:66,136:0.67:202
chr20	50782303	rs6021771	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	50803444	rs36027430	C	T	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	50803573	rs34351592	G	A	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	50803760	rs7269302	T	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	51802132	rs2010156	T	C	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr20	51870849	rs739870	T	C	12916.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr20	51872137	rs147347830	C	T	3820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.108;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:646,252:0.28:898
chr20	52185814	rs4602270	C	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	52557949	rs72548465	G	GTT	2955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.937;QD=22.74;ReadPosRankSum=0.612;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:45,85:0.65:130
chr20	52557950	.	T	TTTGTGTGTGCGCGC	2994	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=31;MMLQ=27;MQ=60.17;NF=12;NR=23;PP=2994;QD=20;SC=TGTGTGTGTGTGTGTGTGCGC;SbPval=0.24;Source=Platypus;TC=49;TCF=13;TCR=36;TR=35;WE=52557966;WS=52557940;set=Platypus	GT:AD:AF:DP	0/1:14,35:0.71:49
chr20	52557958	.	C	T	2267	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=31;MMLQ=20;MQ=60.03;NF=30;NR=24;PP=2267;QD=42.6253928249;SC=TGTGTGTGTGCGCGTGTGTGT;SbPval=0.61;Source=Platypus;TC=84;TCF=45;TCR=39;TR=54;WE=52557966;WS=52557940;set=Platypus	GT:AD:AF:DP	0/1:30,54:0.64:84
chr20	52557958	.	C	CGCGCGTGTGTGT	2624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.360;QD=20.67;ReadPosRankSum=1.272;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:49,78:0.61:127
chr20	52558099	rs6013842	T	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr20	52592140	rs11474654	G	GTA	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr20	52609326	rs6013860	C	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	52611392	rs75411871	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	52611427	.	TAC	T,TACACAC	3287.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=29.89;SOR=1.514;set=HC	GT:AD:AF:DP	1/2:0,70,40:0.64,0.36:110
chr20	52611540	rs208381	C	A	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.51;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr20	52612549	rs6022903	C	T	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	52644837	rs74641839	G	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr20	52645534	rs466264	T	C	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,74:0.51:144
chr20	52674537	.	AT	A	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.200;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr20	52674615	rs465184	A	G	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr20	52675132	rs11473074	C	CTT	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.071;QD=4.94;ReadPosRankSum=1.058;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr20	52675188	rs394732	G	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.851;QD=7.90;ReadPosRankSum=-1.323;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:65,49:0.43:114
chr20	52684924	rs6068765	C	A	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:174,200:0.53:374
chr20	52685084	rs290446	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr20	52774579	rs1570670	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr20	52774601	rs2274130	A	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:23,72:0.76:95
chr20	52774883	rs2274131	C	T	527.78	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr20	52774903	rs2274132	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	52775528	rs2296239	C	T	6948.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:130,321:0.71:451
chr20	52775728	rs2296240	A	G	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,52:0.75:69
chr20	52779247	rs6022993	C	T	5926.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:146,278:0.66:424
chr20	52781251	rs2762939	G	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	52786219	rs2296241	G	A	15919.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr20	52788314	rs2259735	T	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	52789417	rs59262760	C	T	6958.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:113,305:0.73:418
chr20	52789743	rs2248137	C	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	52840801	rs6023050	C	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr20	53205281	rs16999812	G	A	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr20	53205396	rs6014067	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	53259964	rs6064099	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:198,73:0.27:271
chr20	53267111	rs2023454	C	G	6601.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:152,301:0.66:453
chr20	54823779	rs13044293	G	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr20	54961463	rs1047972	T	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:3,173:0.98:176
chr20	54963149	rs67542863	C	CGACAAGACCAACCTCCATGTGGGTTTATAAATGTGAATGAGATTACAGATTATTCAATTTA	2295.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=135.04;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	54963303	rs6099126	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-0.580;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:195,75:0.28:270
chr20	54974424	rs2426617	C	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	55012659	rs16979923	C	A	2104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.270;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:389,146:0.27:535
chr20	55020834	rs370923868	C	T	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:43,99:0.70:142
chr20	55025512	rs6024884	C	G	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.35;ReadPosRankSum=1.673;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr20	55025520	rs182522388	T	C	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=2.243;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr20	55025762	rs6069753	G	A	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	55028343	rs6024887	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr20	55033476	rs3746623	C	G	8653.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:171,396:0.70:567
chr20	55033647	rs3746625	T	C	4983.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:129,226:0.64:355
chr20	55033713	rs3746626	G	A	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:92,208:0.69:300
chr20	55033782	rs7272702	G	T	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.558;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:242,81:0.25:323
chr20	55033856	rs4811697	A	C	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,100:0.75:133
chr20	55045632	rs6024898	G	A	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:103,208:0.67:311
chr20	55047526	rs78987164	A	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,61:0.62:98
chr20	55047632	rs11482055	T	TA	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr20	55048496	rs11471796	T	TGAG	3175.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	55059188	rs58782641	C	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.431;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:138,53:0.28:191
chr20	55059415	.	C	G	454.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr20	55072472	rs6024911	A	G	4578.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:81,207:0.72:288
chr20	55088404	rs1059768	A	G	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	55108617	rs3209183	C	A	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	55111371	rs2296130	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,126:0.72:176
chr20	55204478	rs62208554	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr20	55205661	rs6025019	C	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr20	55209073	rs62208556	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr20	55211581	rs5842120	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.764;QD=6.51;ReadPosRankSum=1.082;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr20	55212711	rs6025024	T	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	55212851	rs141841777	G	A	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:59,232:0.80:291
chr20	55748206	rs2148328	G	A	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=6.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=2.508;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:209,64:0.23:273
chr20	55759048	rs6025429	T	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:118,50:0.30:168
chr20	55800770	rs6025451	A	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	55800888	rs76027718	C	T	4926.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:111,228:0.67:339
chr20	55800937	rs6070031	C	T	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:107,255:0.70:362
chr20	55840900	rs61733434	C	T	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:75,135:0.64:210
chr20	55905029	rs28368062	A	G	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.692;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:175,58:0.25:233
chr20	55918014	rs2236330	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	55929881	rs4811837	T	C	7427.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:101,345:0.77:446
chr20	55949568	rs77937325	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,64:0.72:89
chr20	55975078	rs6025526	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	55975099	rs6014986	T	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.46;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	55975107	rs6025527	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	55982579	rs3764719	T	C	29609.77	.	AC=2;AF=1.00;AN=2;DB;DP=1117;set=Intersection	GT:AD:AF:DP	1/1:0,1104:1.00:1104
chr20	55982695	rs115516069	G	A	33077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=2105;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.243;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:528,1527:0.74:2055
chr20	56064157	rs6128051	C	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:316,129:0.29:445
chr20	56064267	rs6099656	T	C	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.519;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:237,107:0.31:344
chr20	56071399	rs62204254	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.685;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr20	56073595	rs28532211	C	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr20	56082558	rs182199126	T	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,20:0.25:81
chr20	56082994	rs79156876	T	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-0.386;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr20	56083614	.	T	TA	669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.513;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr20	56088857	rs11364370	AT	A	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.375;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:109,35:0.24:144
chr20	56088958	rs6513310	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:111,43:0.28:154
chr20	56089629	rs78625079	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:249,107:0.30:356
chr20	56089869	rs11086612	GT	G	7846.73	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:61,473:0.89:534
chr20	56090807	rs6025601	A	G	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.699;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:270,96:0.26:366
chr20	56094469	rs140034820	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr20	56098733	rs6025606	T	C	10477.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr20	56131216	rs11908628	A	G	5072.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:102,236:0.70:338
chr20	56136536	rs1042521	A	G	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:354,119:0.25:473
chr20	56137798	rs1062600	G	A	2428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.113;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:209,79:0.27:288
chr20	56137807	rs1042523	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.741;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:205,78:0.28:283
chr20	56137834	rs1062601	A	G	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:233,87:0.27:320
chr20	56137895	rs707555	G	C	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr20	56138040	rs2070755	G	C	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:163,77:0.32:240
chr20	56138695	rs28359547	C	T	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:37,104:0.74:141
chr20	56139403	rs2070756	T	C	13077.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr20	56139967	rs1023049	C	T	54.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.70;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr20	56140980	rs1042531	T	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr20	56179411	rs80050451	C	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.472;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:176,43:0.20:219
chr20	56179875	rs8118279	A	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr20	56185241	rs61749015	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr20	56186884	rs2865394	T	C	12061.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr20	56186971	rs35783509	C	T	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:98,269:0.73:367
chr20	56188176	rs143896868	T	C	5774.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:85,254:0.75:339
chr20	56188304	rs114498533	G	T	11434.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:174,518:0.75:692
chr20	56189985	rs16981187	C	G	5837.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:111,269:0.71:380
chr20	56191172	rs11468882	CAG	C	15406.73	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr20	56191360	rs34055120	A	G	6356.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:128,286:0.69:414
chr20	56227514	rs6025698	T	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:167,101:0.38:268
chr20	56227532	rs6025699	T	C	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:108,166:0.61:274
chr20	56227589	rs41314918	C	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:141,81:0.36:222
chr20	56227673	rs73302914	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr20	56228019	rs8183538	G	C	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr20	56265389	rs1556175	G	A	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.805;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:225,88:0.28:313
chr20	56285429	rs6025736	A	G	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr20	56285540	rs2273534	T	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.591;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:237,64:0.21:301
chr20	56470459	rs60432575	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr20	56726107	rs6070358	C	T	12638.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr20	56793546	rs583987	A	G	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	56796528	rs6015225	A	T	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-2.346;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:179,56:0.24:235
chr20	56798017	rs573485	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr20	56803164	rs79767761	G	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr20	56803353	rs1192514	C	T	11312.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:170,518:0.75:688
chr20	56806821	rs586193	A	C	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:88,187:0.68:275
chr20	56807673	rs6015227	T	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:101,40:0.28:141
chr20	56809652	rs619838	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	56810446	rs633276	A	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	56810484	rs503900	C	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	56811400	rs474212	C	A	1235.80	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:7,60:0.90:67
chr20	56813472	rs678936	G	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	56814195	rs3831236	A	AC	1852.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr20	56814892	rs614507	G	T	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:64,137:0.68:201
chr20	56815552	rs113239836	GC	G	328.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr20	56815554	rs201646147	C	A	337.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr20	56815878	rs514706	A	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	56820702	rs595292	G	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.463;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:117,46:0.28:163
chr20	56823391	.	TTTTTTTTATTTATTTA	T	305.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr20	56823395	.	TTTTA	T	612.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr20	56834712	rs57876274	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr20	56846580	rs6015238	T	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	56861637	rs6026181	A	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	56884186	rs483569	T	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	56886062	rs542165	A	G	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr20	56934551	rs3069388	C	CT	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.178;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr20	57042665	rs7265854	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:92,28:0.23:120
chr20	57045667	rs1980576	T	C	4702.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:59,220:0.79:279
chr20	57045765	rs3946003	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:13,87:0.87:100
chr20	57244493	rs2296524	G	A	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:53,172:0.76:225
chr20	57246478	rs11481330	C	CT	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.713;QD=24.55;ReadPosRankSum=-0.032;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr20	57266134	rs6015338	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	57266700	rs6123822	T	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	57266749	.	CTTTTTTT	C,CT	3590.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQRankSum=0.419;QD=34.86;ReadPosRankSum=1.543;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:3,32,68:0.31,0.66:103
chr20	57267942	rs6092682	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	57268994	rs6100166	G	C	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	57273885	rs2296526	T	C	7812.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr20	57274077	rs6092684	T	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr20	57274151	rs2296528	G	C	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	57275949	rs6070554	A	C	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr20	57275988	rs58106586	C	G	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:46,126:0.73:172
chr20	57280480	rs79531216	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:37,81:0.69:118
chr20	57280575	rs6100174	T	C	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	57282107	rs113224784	G	A	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.536;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:203,80:0.28:283
chr20	57290347	rs6026468	C	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.341;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr20	57292888	rs2426776	G	A	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.473;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:426,122:0.22:548
chr20	57293089	rs6026470	A	G	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.749;QD=3.35;ReadPosRankSum=-2.026;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:372,117:0.24:489
chr20	57293118	rs2426777	T	C	4645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=4.662;QD=8.09;ReadPosRankSum=-1.436;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:433,141:0.25:574
chr20	57293124	rs10470038	A	AG	4675.73	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:461,145:0.24:606
chr20	57299030	rs201658287	GGAGGAGGAA	G	1980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.002;QD=20.42;ReadPosRankSum=2.119;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:13,84:0.87:97
chr20	57360653	rs61349087	C	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=23.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	57360720	rs144252791	AGAAAGAAAGAAG	A	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.635;SOR=2.608;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr20	57428947	rs74934823	G	A	13947.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:3,524:0.99:527
chr20	57430477	rs73306256	C	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,62:0.73:85
chr20	57474704	rs371284636	TCACA	T	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.462;QD=35.85;ReadPosRankSum=-0.908;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr20	57475191	rs13831	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	57478807	rs7121	C	T	12658.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr20	57480420	rs3730170	T	C	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	57556295	rs151333	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	57564448	rs12479566	C	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr20	57565943	rs163782	G	C	9914.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	57566162	rs73297212	G	A	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:70,162:0.70:232
chr20	57566528	rs140383965	A	AT	2701.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:39,128:0.77:167
chr20	57566637	rs149265	C	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr20	57566649	rs73297215	A	G	315.82	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr20	57568661	rs73297221	G	A	7475.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:141,342:0.71:483
chr20	57569344	rs59543758	C	T	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:42,129:0.75:171
chr20	57569617	.	C	CA	334.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.691;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr20	57569816	rs7341	G	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.700;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:155,59:0.28:214
chr20	57570568	rs13720	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	57571763	rs9760	A	G	16069.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr20	57572614	rs417847	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.254;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr20	57572675	rs163785	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	57599016	rs163777	T	G	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	57599402	rs6070697	G	A	11638.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:212,527:0.71:739
chr20	57610059	rs151358	C	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr20	57612390	rs151359	C	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	57613373	rs151360	T	C	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:9,51:0.85:60
chr20	57613476	rs79812430	T	C	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.111;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:383,150:0.28:533
chr20	57617698	rs8121266	T	G	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:117,238:0.67:355
chr20	57766356	rs7264193	G	A	6406.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:91,285:0.76:376
chr20	57767043	rs259984	G	C	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	57768399	rs442091	T	C	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	57768531	rs57571629	C	T	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:49,220:0.82:269
chr20	57768607	rs181984	G	C	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.771;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:213,66:0.24:279
chr20	57769854	rs454356	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.426;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr20	57828923	rs259957	A	C	291.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-1.505;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr20	57829301	rs259956	T	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:265,122:0.32:387
chr20	57829821	rs3041675	C	CTT	935.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr20	57897610	rs138200790	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr20	57899346	rs11570350	C	T	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.547;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:476,183:0.28:659
chr20	58180214	.	C	G	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=0.831;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:18,67:0.79:85
chr20	58322956	rs2277758	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	58330128	rs1182477	G	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr20	58411441	rs2426849	T	C	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	58415393	.	A	AT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.447;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr20	58420336	rs1416388	G	A	9730.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr20	58425413	rs2865768	C	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	58450287	rs8125234	T	C	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	58533744	rs6071043	T	G	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:89,150:0.63:239
chr20	58574537	rs2092929	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr20	58581750	rs6027236	C	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr20	58581863	rs195004	G	C	7490.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	58581873	rs195005	A	G	7367.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	58606474	rs115087347	C	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.402;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:250,76:0.23:326
chr20	58644995	rs6071100	T	C	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	58883399	rs11408280	A	AT	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:113,32:0.22:145
chr20	58883516	rs6513495	A	G	6387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.177;QD=9.19;ReadPosRankSum=0.564;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:497,198:0.28:695
chr20	58883534	rs6513496	T	C	6315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.745;QD=9.50;ReadPosRankSum=-1.360;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:475,190:0.29:665
chr20	58883605	rs6513497	T	G	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:418,172:0.29:590
chr20	58883675	rs6027486	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:239,113:0.32:352
chr20	58883730	rs6027487	T	C	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=8.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.716;SOR=1.556;set=HC	GT:AD:AF:DP	0/1:94,36:0.28:130
chr20	58883730	.	TCT	CCC	1316	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=27;MQ=59.83;NF=7;NR=27;PP=1316;QD=40.2784669077;SC=CAGGAGGTGATCTTACCTACC;SbPval=0.84;Source=Platypus;TC=99;TCF=28;TCR=71;TR=34;WE=58883740;WS=58883720;set=Platypus	GT:AD:AF:DP	1/0:65,34:0.34:99
chr20	58883732	rs6027488	T	C	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.508;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:85,34:0.29:119
chr20	59091946	rs6064934	A	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr20	59139607	rs6092966	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	59431577	rs67384675	TACACACACAC	T	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.000;QD=21.70;ReadPosRankSum=-0.015;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr20	59827498	.	TCGG	T	1168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.490;QD=33.39;ReadPosRankSum=2.761;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr20	59827596	rs78216276	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-1.801;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:15,43:0.74:58
chr20	59829847	rs3752252	C	T	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.095;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:196,69:0.26:265
chr20	59908320	.	TACACAC	T,TAC	8435.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=262;set=Intersection	GT:AF:DP	1/2:0.11,0.88:205
chr20	59908349	rs11086735	A	G	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	59908377	rs11908491	T	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:85,32:0.27:117
chr20	60145618	rs111228520	CT	C	1531.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	60145672	rs2252560	T	G	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	60145699	rs73914865	T	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	60145710	rs73136668	A	G	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	60145748	rs73914867	G	A	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	60145887	rs73136669	T	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	60293875	rs55641738	C	T	15480.77	.	AC=1;AF=0.500;AN=2;DB;DP=1039;set=Intersection	GT:AD:AF:DP	0/1:309,719:0.70:1028
chr20	60293919	rs2892179	C	A	19612.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:4,752:0.99:756
chr20	60294139	rs73915369	G	A	5893.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:72,262:0.78:334
chr20	60294246	rs11440327	A	AT	2009.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:79,129:0.62:208
chr20	60347928	rs76634929	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr20	60448750	rs111310315	G	T	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	60485327	rs1776237	C	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	60498447	rs6061386	C	T	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-1.703;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:387,104:0.21:491
chr20	60498459	rs2427245	T	C	14817.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:2,565:1.00:567
chr20	60498832	rs11484270	A	AC	2016.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:13,71:0.85:84
chr20	60499577	rs6061896	C	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:19,66:0.78:85
chr20	60503489	rs6061901	C	T	6514.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:118,283:0.71:401
chr20	60504734	rs6061902	C	T	14633.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:304,690:0.69:994
chr20	60509387	rs3827115	T	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:28,79:0.74:107
chr20	60512018	rs199615187	G	A	4514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.70;ReadPosRankSum=0.113;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:41,122:0.75:163
chr20	60512028	rs3761222	G	C	4128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.28;ReadPosRankSum=1.210;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:35,97:0.73:132
chr20	60572663	rs2296081	C	A	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr20	60573983	rs2296082	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	60574216	rs2296083	C	T	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	60582540	rs2281735	T	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	60584032	rs7268781	G	C	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr20	60584328	rs2296087	T	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	60639883	.	T	C	85	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=3;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=1;NR=3;PP=85;QD=29.9428031368;SC=CGGGCCCGGGTTGGCCGCTGA;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=60639891;WS=60639873;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	60640315	rs185656881	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.33;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	60704117	rs4925345	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr20	60713332	rs1135961	A	G	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:101,216:0.68:317
chr20	60714302	rs1189727	G	A	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:80,180:0.69:260
chr20	60733639	rs6142963	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr20	60733672	rs6062094	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=6.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.149;SOR=1.838;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr20	60735098	rs6121926	T	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	60736467	rs61422126	C	T	8083.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:154,364:0.70:518
chr20	60738339	rs73915601	C	A	598.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.43;ReadPosRankSum=1.427;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:1,15:0.94:16
chr20	60738349	rs113139904	G	T	626.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.87;ReadPosRankSum=0.553;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:1,16:0.94:17
chr20	60739079	rs56285165	G	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr20	60739092	rs61598322	C	T	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr20	60739353	rs146750123	GGGGCAAGGA	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.158;QD=3.39;ReadPosRankSum=-3.346;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr20	60740362	rs6142964	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr20	60740447	rs2295208	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:240,84:0.26:324
chr20	60740584	rs60919036	CTG	C	4210.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=61.79;MQRankSum=18.948;QD=7.60;ReadPosRankSum=-1.071;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:418,136:0.25:554
chr20	60740587	.	CGTGCTGGGCTCGA	C	4184.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DP=558;ExcessHet=3.0103;FS=2.075;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=18.891;QD=7.59;ReadPosRankSum=-1.012;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:415,136:0.25:551
chr20	60740631	rs79852811	C	T	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=62.64;MQRankSum=17.086;QD=3.66;ReadPosRankSum=1.872;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:230,83:0.27:313
chr20	60747782	rs36106901	G	A	11148.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:184,512:0.74:696
chr20	60773041	rs6062140	G	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.434;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:131,28:0.18:159
chr20	60773684	rs4925355	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:121,53:0.30:174
chr20	60774035	rs6142990	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.350;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:167,43:0.20:210
chr20	60776182	rs1054885	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr20	60791404	rs3787429	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr20	60791422	rs3787430	C	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr20	60792029	rs1739583	G	A	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	60808026	rs6089695	C	T	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.865;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:464,125:0.21:589
chr20	60831300	rs6089706	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.030;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr20	60848248	rs6061476	G	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	60848348	rs2236526	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:95,39:0.29:134
chr20	60854994	rs75562186	G	A	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:32,82:0.72:114
chr20	60855970	rs80225038	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr20	60856015	rs113246582	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr20	60857034	rs2274938	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr20	60859381	rs4925225	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	60859430	rs11306058	AT	A	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr20	60859486	rs4925226	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	60864390	rs3746657	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.901;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr20	60879447	rs113337191	T	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr20	60881330	rs2427273	G	A	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.010;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:460,130:0.22:590
chr20	60881643	rs2427274	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	60881780	rs2427275	T	C	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	60882277	rs2427277	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	60882888	rs2427278	A	G	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	60883273	rs2236523	A	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:8,49:0.86:57
chr20	60884651	rs6143020	T	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	60884695	.	T	TGGGGGGGTGGGAGGGGGTGGG	456.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=76.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	60885142	rs2379129	C	A	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.568;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:311,98:0.24:409
chr20	60885448	rs944897	A	G	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr20	60886611	rs2297590	C	T	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.123;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:243,88:0.27:331
chr20	60887581	rs944895	G	A	14089.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr20	60890375	rs6062210	C	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	60891288	rs2065578	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	60892526	rs2427281	A	G	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr20	60892692	rs6062216	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr20	60895738	rs6089346	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:165,72:0.30:237
chr20	60897071	rs2274936	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:142,52:0.27:194
chr20	60898505	rs2379128	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr20	60899206	rs2427283	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:117,76:0.39:193
chr20	60899741	rs78309534	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr20	60900481	rs2427284	A	G	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=2.460;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:370,134:0.27:504
chr20	60900579	rs2427285	C	A	2259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.702;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:492,161:0.25:653
chr20	60902214	rs944894	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.404;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr20	60902490	rs944892	C	T	4510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=1275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.708;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:938,328:0.26:1266
chr20	60902544	rs944891	A	C	5051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=1473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-2.302;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:1095,364:0.25:1459
chr20	60902883	rs4925375	C	T	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:283,116:0.29:399
chr20	60904421	rs140984798	GCAGCCCAGCCCAGCC	G	765.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr20	60904853	rs2427286	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:305,151:0.33:456
chr20	60905420	rs114291899	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.109;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr20	60906277	rs372095105	TG	T,TGG	201.19	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	1/1:0.75:12
chr20	60909786	rs149378083	G	GTCAGGGC	491.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr20	60909809	.	C	CAGGGCG	574.73	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr20	60910344	rs73313222	G	A	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:81,176:0.68:257
chr20	60911989	rs74992645	C	T	19659.77	.	AC=1;AF=0.500;AN=2;DB;DP=1269;set=Intersection	GT:AD:AF:DP	0/1:342,917:0.73:1259
chr20	60920545	rs6143034	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	60920700	rs6143035	T	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:86,41:0.32:127
chr20	60921643	rs4925229	T	C	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr20	60921701	rs4925387	A	G	17938.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr20	60921721	rs6143036	C	A	2944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.549;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:508,197:0.28:705
chr20	60921896	rs4925388	A	G	12294.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr20	60926828	rs62204553	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:259,109:0.30:368
chr20	60927257	rs2427294	G	A	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:179,79:0.31:258
chr20	60927349	rs483876	C	T	3305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.835;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:590,228:0.28:818
chr20	60927431	rs2427295	G	A	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.274;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:392,138:0.26:530
chr20	60927475	rs2427296	G	A	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.440;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:148,63:0.30:211
chr20	60937597	rs477859	A	G	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:76,154:0.67:230
chr20	60962536	rs79903999	C	A	29212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=1980;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=0.461;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:594,1363:0.70:1957
chr20	60963037	rs6061233	T	C	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-0.255;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:243,90:0.27:333
chr20	60963055	rs911077	T	C	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:72,203:0.74:275
chr20	60963346	rs11315364	CT	C	2610.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:29,165:0.85:194
chr20	60966318	rs6089219	G	T	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	60968178	.	CAGGGG	C	5035.73	.	AC=1;AF=0.500;AN=2;DP=228;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:62,126:0.67:188
chr20	60969261	rs61739602	G	A	3215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.240;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:553,215:0.28:768
chr20	60969886	rs2427309	G	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	60969927	rs78353357	G	A	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-0.963;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:26,77:0.75:103
chr20	60969927	.	GCC	ACG	561	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=24;MQ=60.0;NF=24;NR=16;PP=561;QD=15.3616968716;SC=CCTGGGCCTGGCCGAGACCAG;SbPval=0.67;Source=Platypus;TC=61;TCF=35;TCR=26;TR=40;WE=60969937;WS=60969917;set=Platypus	GT:AD:AF:DP	1/0:21,40:0.66:61
chr20	60969929	rs2427310	C	G	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.45;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	60970123	rs2427311	A	G	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	60971306	rs748036	G	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr20	60971327	rs748037	A	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	60971671	rs76599486	C	G	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:49,165:0.77:214
chr20	60982024	rs146975578	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr20	60986027	rs146580686	T	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.660;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:374,143:0.28:517
chr20	60989185	rs10888228	C	T	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	60990619	rs114713822	G	A	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:18,85:0.83:103
chr20	60990900	rs78287067	G	A	7569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=-1.504;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:127,352:0.73:479
chr20	60992485	.	C	CTGGGGCTGGATCCTGCTCAGTGCCCCCGACTGTGGGGACTTGCCCTTGAAGTCGACCCTG	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.21;ReadPosRankSum=-1.582;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr20	60992496	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.94;ReadPosRankSum=1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr20	61039958	rs6061550	T	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr20	61040453	rs6061243	C	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	61040668	rs112618954	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	61040867	rs75188102	G	A	12383.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr20	61040951	rs6587239	C	T	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	61041617	rs73303279	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	61041653	rs6061244	G	C	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	61041687	rs6121610	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	61143827	rs140092114	C	T	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.740;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:381,147:0.28:528
chr20	61143943	rs6062279	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr20	61150602	rs76047652	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.991;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr20	61150928	rs12624794	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr20	61162267	rs6062251	T	C	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.065;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:198,74:0.27:272
chr20	61162423	rs6062250	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:152,57:0.27:209
chr20	61167883	rs6143064	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:84,28:0.25:112
chr20	61167934	rs6143063	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr20	61273519	rs79252763	C	T	9022.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:139,410:0.75:549
chr20	61273578	rs6089951	C	T	6894.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:125,311:0.71:436
chr20	61288143	rs376182840	G	A	8637.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:144,384:0.73:528
chr20	61289958	rs2427369	G	A	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:34,122:0.78:156
chr20	61292373	rs144381587	G	GAGCCCCC,GAGCCCCCAGCCCCCAGCCCCC	4738.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=91;set=Intersection	GT:AF:DP	1/2:0.82,0.18:83
chr20	61299073	rs75017469	C	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr20	61326276	rs2427393	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr20	61326380	rs2427394	C	T	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.976;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:398,124:0.24:522
chr20	61331649	rs6010899	A	G	3754.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:53,163:0.75:216
chr20	61331946	rs6010900	A	G	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr20	61340694	rs61742231	C	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-1.236;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:321,117:0.27:438
chr20	61341373	rs112321702	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,65:0.69:94
chr20	61385926	rs73314913	G	C	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr20	61386147	rs35373650	A	C	13018.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:194,604:0.76:798
chr20	61386225	rs34864360	C	T	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:57,213:0.79:270
chr20	61391367	rs78644145	C	A	9682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.432;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:186,428:0.70:614
chr20	61391628	rs16983222	C	T	8745.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:146,393:0.73:539
chr20	61427869	rs140838580	C	T	286.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.851;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr20	61428414	rs62198430	T	G	8869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=1.003;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:173,433:0.71:606
chr20	61428423	rs11696245	A	C	25265.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr20	61439696	rs41282978	C	G	7764.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:191,374:0.66:565
chr20	61439708	rs760276	G	A	6642.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:163,311:0.66:474
chr20	61440812	rs73317076	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr20	61441035	rs2277772	G	A	7219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.477;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.019;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=0.892;SOR=0.119;set=HC	GT:AD:AF:DP	1/1:2,279:0.99:281
chr20	61441061	rs45585738	G	A	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:45,154:0.77:199
chr20	61441797	rs2277771	A	G	10994.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr20	61443547	rs2075776	A	G	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	61451305	rs35908728	C	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.380;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:220,71:0.24:291
chr20	61452761	rs140708008	C	T	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:189,92:0.33:281
chr20	61453348	rs8114983	T	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr20	61455666	rs2746258	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.171;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:49,29:0.37:78
chr20	61457292	rs79659176	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.376;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:101,17:0.14:118
chr20	61458191	rs115466848	G	A	1872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.526;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:233,114:0.33:347
chr20	61458547	rs2249766	A	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,37:0.32:115
chr20	61460053	rs2249897	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,22:0.27:81
chr20	61460338	rs6062700	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr20	61460732	rs78289147	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr20	61460740	rs2294991	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr20	61463355	rs751558	G	A	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,65:0.31:211
chr20	61463501	rs741758	T	C	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=2.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.887;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:282,104:0.27:386
chr20	61463522	rs751557	C	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=3.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.024;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:235,73:0.24:308
chr20	61464184	rs1018439	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.980;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr20	61464440	rs1018440	G	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.039;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:210,68:0.24:278
chr20	61464497	rs2294994	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,34:0.31:110
chr20	61467445	rs6011413	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:95,44:0.32:139
chr20	61467898	rs910152	G	C	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	61467912	rs111293413	GCGGGGCCCATCCC	G	947.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=6.24;ReadPosRankSum=0.428;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr20	61468571	rs2294995	T	C	9784.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr20	61469894	rs11906954	G	A	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,73:0.75:97
chr20	61476988	rs145506507	GTCA	G	3166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.185;QD=9.29;ReadPosRankSum=1.046;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:247,94:0.28:341
chr20	61488701	rs151257365	AG	A	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:144,54:0.27:198
chr20	61490938	rs6090144	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=8.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.912;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr20	61512192	rs74590491	G	C	9074.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:169,415:0.71:584
chr20	61512606	rs910148	T	C	12855.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:4,503:0.99:507
chr20	61512979	rs80326045	G	A	13189.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:220,601:0.73:821
chr20	61513649	rs6011441	G	T	12256.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,473:1.00:475
chr20	61524133	rs2294998	C	T	13606.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:2,533:1.00:535
chr20	61524384	rs11362069	CT	C	302.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr20	61525488	rs112062101	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.991;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:200,69:0.26:269
chr20	61526001	rs750079	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	61526023	rs1883846	T	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	61528074	rs910149	T	C	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	61575188	rs11300197	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.225;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr20	61577275	rs2427452	T	C	13695.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr20	61577349	rs115641380	T	C	7978.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:146,375:0.72:521
chr20	61588062	rs75875631	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr20	61588159	rs2245341	A	G	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr20	61594571	rs79503248	C	T	3275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.015;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:781,250:0.24:1031
chr20	61594679	rs2427463	A	G	20810.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:4,789:0.99:793
chr20	61595537	rs2427464	A	G	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	61598899	rs3746750	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:28,91:0.76:119
chr20	61640934	rs11281878	A	AGCGGCTCCGC	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr20	61711430	rs112147947	T	C	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr20	61711484	rs62206577	T	C	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:118,219:0.65:337
chr20	61711616	rs62206578	A	C	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:24,79:0.77:103
chr20	61711642	rs112169283	CT	C	848.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr20	61711648	rs76011895	C	T	863.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr20	61711649	rs77448481	C	T	240.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr20	61834536	rs79046601	G	A	10744.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:199,493:0.71:692
chr20	61834707	rs115419512	G	A	13051.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:260,600:0.70:860
chr20	61847068	rs6090310	C	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:27,66:0.71:93
chr20	61867454	rs6011691	A	G	7804.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:139,358:0.72:497
chr20	61867828	rs6011692	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr20	61869223	rs6062855	T	C	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:79,193:0.71:272
chr20	61869502	rs377082433	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr20	61869607	rs6010878	C	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr20	61869645	rs6010879	G	A	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:44,109:0.71:153
chr20	61869826	rs2273487	C	T	4381.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:77,185:0.71:262
chr20	61869949	rs6011693	C	G	8367.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:120,379:0.76:499
chr20	61870075	rs744590	C	T	4007.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:52,166:0.76:218
chr20	61870167	rs744591	C	A	11165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.951;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=2.122;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:240,513:0.68:753
chr20	61870220	rs744592	T	C	17387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=1163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.951;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:340,813:0.71:1153
chr20	61870417	rs55884143	G	A	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:28,101:0.78:129
chr20	61870465	rs1075557	A	G	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:47,173:0.79:220
chr20	61870605	rs3215649	T	TG	5749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.567;QD=22.37;ReadPosRankSum=1.179;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:61,196:0.76:257
chr20	61870634	rs1075556	A	G	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:54,157:0.74:211
chr20	61870727	rs1077019	G	C	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:67,197:0.75:264
chr20	61870981	rs115476972	C	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr20	61872905	rs1047826	A	G	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:96,232:0.71:328
chr20	61873039	rs1047822	T	C	5087.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:104,234:0.69:338
chr20	61874099	rs114048853	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:45,168:0.79:213
chr20	61875497	rs2236186	A	C	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:73,184:0.72:257
chr20	61875909	rs73153507	C	T	5154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-1.474;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:118,246:0.68:364
chr20	61879009	rs2236194	G	T	8273.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:161,377:0.70:538
chr20	61880274	rs2273497	A	G	6185.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:93,280:0.75:373
chr20	61881296	rs927081	A	G	6090.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:138,309:0.69:447
chr20	61881559	rs2295535	G	A	198.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr20	61885452	rs34203226	G	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	61885821	.	AGGCCCCCGGGTGCCCCGCGCTC	A	427.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr20	61907075	rs6011712	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr20	61907566	rs114280577	C	T	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:42,136:0.76:178
chr20	61910689	rs142347708	C	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr20	61912715	rs2236195	T	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:38,120:0.76:158
chr20	61915088	rs6010893	C	T	5614.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:116,251:0.68:367
chr20	61915949	.	C	T	2996.77	.	AC=1;AF=0.500;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	0/1:50,126:0.72:176
chr20	61915961	rs76115026	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:150,60:0.29:210
chr20	61917241	rs6090342	A	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	61917635	rs11906367	G	A	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:349,142:0.29:491
chr20	61918164	rs6062431	C	G	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:233,91:0.28:324
chr20	61937296	rs753686	C	T	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.120;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:315,107:0.25:422
chr20	61940080	rs61752592	C	T	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:183,102:0.36:285
chr20	61941327	rs6010897	A	G	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:51,146:0.74:197
chr20	61941747	rs4809287	A	G	11382.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr20	61942656	rs111950139	T	C	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr20	61943132	rs6090356	A	G	229.98	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr20	61943496	rs138795296	AAC	A	1389.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr20	61943735	rs4809288	A	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr20	61943803	rs6011729	C	T	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.268;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:130,67:0.34:197
chr20	61944193	rs4809530	T	C	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:98,209:0.68:307
chr20	61945411	rs75513393	T	C	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:51,85:0.62:136
chr20	61945439	rs147670144	G	C	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:80,168:0.68:248
chr20	61946692	rs6090357	C	T	10801.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	61947771	rs191993231	G	C	2878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=-1.922;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:31,72:0.70:103
chr20	61947771	.	GCC	CCT	1673	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=1;MGOF=27;MMLQ=27;MQ=60.0;NF=28;NR=11;PP=1673;QD=44.2684070477;SC=TCCCACCCACGCCGCTCCGTC;SbPval=0.38;Source=Platypus;TC=61;TCF=46;TCR=15;TR=39;WE=61947781;WS=61947761;set=Platypus	GT:AD:AF:DP	1/0:22,39:0.64:61
chr20	61947773	rs3746379	C	T	2878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-0.604;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:36,73:0.67:109
chr20	61947830	rs3746380	C	T	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:98,222:0.69:320
chr20	61948121	rs115605588	C	T	983.89	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:5,42:0.89:47
chr20	61951326	rs11478836	CT	C	3641.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	61952286	rs116462805	A	G	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	61952385	rs115782548	C	G	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr20	61952490	rs4809533	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr20	61952521	rs115219381	G	A	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	61953355	rs76380534	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	61953365	rs1884821	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	61956604	rs6089883	G	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	61956698	rs6010902	T	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.109;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:156,59:0.27:215
chr20	61956782	rs2314251	T	C	13185.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr20	61957213	rs76244047	C	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	61958334	rs6090364	C	T	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr20	61959227	rs4809536	T	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	61959369	rs8126037	T	C	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	61959585	rs113209090	T	A	9541.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	61959758	rs115749294	C	T	14770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.813;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-0.214;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:320,686:0.68:1006
chr20	61960762	rs5842416	CTG	C	5743.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	61960811	rs145499640	TC	T	12204.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	61960819	rs76283480	A	G	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=41.88;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	61960849	rs147681741	A	AG	13910.73	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr20	61960923	rs6011739	C	T	15156.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr20	61960961	rs6011740	T	C	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr20	61961032	rs11467582	CATCT	C	3938.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	61961045	rs6011741	A	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	61961092	rs6010904	G	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	61961117	rs114781433	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr20	61981536	rs2229960	A	G	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:64,143:0.69:207
chr20	61982085	rs1044394	A	G	9853.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:172,451:0.72:623
chr20	61986863	rs45473291	C	G	7915.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:154,369:0.71:523
chr20	61986949	rs2273500	T	C	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:70,155:0.69:225
chr20	61987512	.	GGGGCAGGGGCAGGGCCAGGGCA	G	1174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=7.661;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.718;QD=14.50;ReadPosRankSum=4.455;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr20	61987822	rs2273502	C	T	5156.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:84,229:0.73:313
chr20	61990874	rs6090384	T	C	18002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=0.246;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:135,437:0.76:572
chr20	61990878	rs2273505	C	T	18478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.59;ReadPosRankSum=-0.435;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:139,465:0.77:604
chr20	61990939	rs2273506	G	A	10729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=-1.492;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:152,497:0.77:649
chr20	61992494	rs6089898	C	G	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.174;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr20	61992547	rs6090387	G	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=9.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.176;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr20	62038277	rs1801475	T	G	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:73,169:0.70:242
chr20	62038810	rs3746363	G	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr20	62040022	rs2236197	T	C	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:37,118:0.76:155
chr20	62040049	.	C	T	1379.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr20	62042476	rs141428932	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr20	62046496	rs112006486	C	CGACAGACA	16685.73	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.73;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	62046549	rs75305929	C	T	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:68,166:0.71:234
chr20	62073706	rs144570836	G	A	8964.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:142,397:0.74:539
chr20	62076743	rs6062939	C	A	13642.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr20	62119559	rs2750403	C	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=23.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	62119588	rs71799118	GC	G	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=39.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	62119594	rs71792296	GC	G	879.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=46.30;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	62119615	rs2750402	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.29;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	62119793	rs200634874	G	A	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:73,201:0.73:274
chr20	62119822	rs140125000	AC	A	2359.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:24,93:0.79:117
chr20	62121702	rs310607	A	G	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr20	62121726	rs310608	T	C	12900.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr20	62121820	rs45510898	G	A	2549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.374;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:574,186:0.24:760
chr20	62127121	rs310618	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr20	62127521	rs310619	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	62128946	rs181488381	G	A	5772.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:91,262:0.74:353
chr20	62153190	rs113534342	C	T	9205.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:140,411:0.75:551
chr20	62153311	rs1139147	G	C	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.44;SOR=1.991;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	62153517	rs139707650	AG	A	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=36.52;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	62161418	rs374800	G	C	13559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.525;QD=32.67;ReadPosRankSum=-0.169;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:88,327:0.79:415
chr20	62161422	rs6011874	G	A	13702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.523;QD=31.79;ReadPosRankSum=-0.322;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:91,340:0.79:431
chr20	62162058	rs77954299	G	A	4411.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:61,198:0.76:259
chr20	62162340	rs191090	T	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	62164169	rs59130722	GC	G	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr20	62165034	rs56338872	A	G	8006.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:172,373:0.68:545
chr20	62165065	rs6011881	A	G	6139.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:138,283:0.67:421
chr20	62165135	rs6011882	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr20	62165202	rs6011883	G	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr20	62165803	rs11478465	GC	G	3304.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	62165821	rs6011884	C	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	62166226	rs6010959	G	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:60,126:0.68:186
chr20	62172269	rs310654	C	A	11688.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:255,551:0.68:806
chr20	62172281	rs310655	C	T	11594.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:235,545:0.70:780
chr20	62173029	rs310656	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	62173587	rs61740190	C	T	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:501,204:0.29:705
chr20	62173741	rs310658	G	A	8855.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:190,403:0.68:593
chr20	62173817	rs34969822	C	T	16529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-1.087;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:319,769:0.71:1088
chr20	62173925	rs404613	T	G	16801.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.91;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr20	62173927	rs378483	G	A	6805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.352;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:105,303:0.74:408
chr20	62174867	rs6011894	T	C	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:63,149:0.70:212
chr20	62187439	rs734750	T	C	9317.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:178,431:0.71:609
chr20	62191273	rs376714559	G	A	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.166;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:171,58:0.25:229
chr20	62191321	rs3810477	A	G	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	62191475	rs3810478	T	G	9053.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	62191759	.	A	AGCACCAGACACTCACCACCTCAGCCACCTCCTCCAGAAAGCCCTCCCTGACTCACAG	1469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.150;QD=244.96;ReadPosRankSum=0.319;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:5,1:0.17:6
chr20	62191907	rs35745161	G	A	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:601,237:0.28:838
chr20	62193414	rs310629	A	G	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	62194030	rs3810483	G	C	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.820;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:286,95:0.25:381
chr20	62194103	rs3810484	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	62194220	rs137869270	G	A	6598.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:105,300:0.74:405
chr20	62194510	rs34980032	T	C	13351.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr20	62194528	rs61741527	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.135;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:332,89:0.21:421
chr20	62195087	rs310630	A	G	17536.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:2,684:1.00:686
chr20	62195227	rs113502609	A	G	5905.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:111,268:0.71:379
chr20	62195663	rs112643756	G	A	7548.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:170,348:0.67:518
chr20	62195726	rs45469491	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:352,146:0.29:498
chr20	62196182	rs3810488	G	A	7694.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:129,352:0.73:481
chr20	62196350	rs61741972	G	C	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.332;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:322,112:0.26:434
chr20	62196807	rs310632	T	C	19225.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr20	62196884	rs310633	A	G	12672.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr20	62197905	rs310634	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr20	62198236	rs415304	G	A	15702.77	.	AC=1;AF=0.500;AN=2;DB;DP=1033;set=Intersection	GT:AD:AF:DP	0/1:297,725:0.71:1022
chr20	62198348	rs438363	C	T	25897.77	.	AC=2;AF=1.00;AN=2;DB;DP=971;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.940;set=HC	GT:AD:AF:DP	1/1:0,963:1.00:963
chr20	62198662	rs367440	A	G	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr20	62198686	rs3827025	G	A	1981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=1.167;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:280,123:0.31:403
chr20	62199100	rs422888	G	A	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:60,138:0.70:198
chr20	62199126	rs3810491	C	G	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.337;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:108,39:0.27:147
chr20	62200575	rs1741594	T	C	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	62200860	rs1757752	A	G	27789.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.02;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,731:1.00:731
chr20	62200871	rs61745755	G	A	11158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=0.217;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:194,514:0.73:708
chr20	62201784	rs749079	T	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:263,92:0.26:355
chr20	62202240	rs402211	A	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	62202293	rs145119112	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr20	62202301	rs3746346	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr20	62221610	rs311496	T	C	5216.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:91,232:0.72:323
chr20	62222211	rs1291170	T	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr20	62223371	rs311494	A	G	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:71,188:0.73:259
chr20	62224083	rs2236502	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr20	62227081	rs311489	A	G	5931.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:114,282:0.71:396
chr20	62229337	rs414897	G	A	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:43,115:0.73:158
chr20	62234241	rs2145262	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr20	62234273	rs766915	A	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr20	62236148	rs6090471	T	C	9211.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr20	62272658	rs2150910	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.11;QD=24.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	62273435	rs186744824	G	A	4270.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.900;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=6.407;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=8.726;QD=23.99;ReadPosRankSum=-0.141;SOR=0.149;set=HC	GT:AD:AF:DP	1/1:6,172:0.97:178
chr20	62275844	rs6010986	TC	CT	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	62291008	rs6089953	A	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	62294015	rs2297434	C	T	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	62303794	rs6062300	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr20	62305274	rs2297437	G	A	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.913;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:339,118:0.26:457
chr20	62309368	.	T	C	185	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=79;MMLQ=24;MQ=59.71;NF=12;NR=3;PP=185;QD=14.6514141698;SC=TTGGCCTGCATGGATTCTGTG;SbPval=0.53;Source=Platypus;TC=49;TCF=40;TCR=9;TR=15;WE=62309376;WS=62309358;set=Platypus	GT:AD:AF:DP	1/0:34,15:0.31:49
chr20	62309554	rs41309367	C	T	8105.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:118,373:0.76:491
chr20	62312299	rs2297440	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	62319464	rs2738785	T	C	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	62319604	rs2777941	A	C	22995.77	.	AC=2;AF=1.00;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	1/1:1,897:1.00:898
chr20	62320968	rs6062302	T	C	16975.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr20	62321655	rs2236506	G	A	17438.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr20	62322288	rs3208007	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	62322359	rs75757504	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr20	62323006	rs2236507	G	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr20	62324315	rs140986557	C	T	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.175;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.067;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:525,182:0.26:707
chr20	62326110	rs3208008	A	C	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr20	62328375	rs2738787	A	G	18233.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr20	62328940	rs112115570	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.083;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr20	62332025	rs35158527	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.059;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:247,70:0.22:317
chr20	62332181	rs6011038	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.707;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr20	62332436	rs2738788	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	62332638	rs374497353	A	AC	15525.73	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr20	62333350	.	GCCC	G,GCC	458.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=121;set=Intersection	GT:AF:DP	0/1:0.22:100
chr20	62333362	.	C	A	1609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=1.050;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,75:0.74:101
chr20	62333362	.	C	CA	1076	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=13;HapScore=3;MGOF=15;MMLQ=24;MQ=59.96;NF=5;NR=14;PP=1076;QD=56.8421052632;SC=CCCCCCCCCCCCCGTCACCCA;SbPval=0.62;Source=Platypus;TC=51;TCF=14;TCR=37;TR=19;WE=62333370;WS=62333340;set=Platypus	GT:AD:AF:DP	1/0:32,19:0.37:51
chr20	62337622	rs1291211	A	G	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	62340115	rs1291212	C	G	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	62364885	rs6011068	T	A	16454.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr20	62367363	rs6011070	G	C	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.550;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:134,38:0.22:172
chr20	62367377	rs2427535	A	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:27,98:0.78:125
chr20	62369300	rs914559	C	G	10501.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.06;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr20	62369426	rs150938918	C	CGGGGCG	9599.73	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:2,369:0.99:371
chr20	62369895	rs1151624	A	G	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr20	62370349	rs1056441	T	C	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	62372706	rs4809221	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr20	62372813	rs2427536	G	A	9087.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	62373665	rs35891783	ACTGG	A	1506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.272;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:129,46:0.26:175
chr20	62373707	rs8957	G	T	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	62374096	rs7996	C	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:165,66:0.29:231
chr20	62374219	rs1151626	A	C	15805.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:2,607:1.00:609
chr20	62374441	rs6742	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:15,94:0.86:109
chr20	62475297	rs73325392	A	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:189,102:0.35:291
chr20	62517549	rs4809241	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	62518729	rs3795156	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	62518766	rs3795157	C	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	62520671	rs6062569	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	62520674	rs6010690	G	T	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	62559964	rs817362	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	62571417	.	AGG	A,AG	3149.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=3.883;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.47;MQRankSum=0.723;QD=21.28;ReadPosRankSum=-0.821;SOR=1.700;set=HC	GT:AD:AF:DP	1/2:10,44,94:0.30,0.64:148
chr20	62573064	rs817370	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	62576991	rs2252258	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	62577613	rs751327	T	C	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:231,112:0.33:343
chr20	62578005	rs60267770	A	G	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr20	62578077	rs111264888	A	AT	903.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr20	62578078	rs2427572	C	T	109.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.726;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr20	62592801	rs139888064	AC	A	1838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.540;QD=5.27;ReadPosRankSum=-0.305;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:266,83:0.24:349
chr20	62593202	rs147451140	G	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:19,93:0.83:112
chr20	62593580	rs2297808	G	T	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=-0.505;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:14,59:0.81:73
chr20	62595169	rs817325	A	G	19065.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr20	62595882	rs116458703	C	T	5272.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:81,243:0.75:324
chr20	62597433	.	G	A	364	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=2;MGOF=84;MMLQ=23;MQ=57.38;NF=12;NR=1;PP=364;QD=30.6747086575;SC=CCTGACCTGGGACGAGCCCCC;SbPval=0.64;Source=Platypus;TC=13;TCF=12;TCR=1;TR=13;WE=62597441;WS=62597430;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	62597455	.	T	C	940	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=27;MQ=59.0;NF=24;NR=2;PP=940;QD=37.4912004826;SC=TACCTTTTCTTACCACTGTTC;SbPval=0.59;Source=Platypus;TC=26;TCF=24;TCR=2;TR=26;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	62597463	.	TTCC	T	1465	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=24;MQ=59.29;NF=19;NR=3;PP=1465;QD=68.0909090909;SC=CTTACCACTGTTCCTCCCCGA;SbPval=0.89;Source=Platypus;TC=26;TCF=20;TCR=6;TR=22;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/1:4,22:0.85:26
chr20	62597694	rs817329	T	G	18195.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:2,681:1.00:683
chr20	62598207	rs73316609	C	T	7888.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:198,372:0.65:570
chr20	62598815	rs817330	C	T	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.963;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:498,133:0.21:631
chr20	62598907	rs112250780	G	A	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=1.216;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:275,91:0.25:366
chr20	62606765	rs817341	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr20	62607160	rs817343	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.647;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:121,34:0.22:155
chr20	62609670	rs817348	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.434;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr20	62612480	rs115265032	G	A	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:144,77:0.35:221
chr20	62614448	rs34062309	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:146,80:0.35:226
chr20	62626152	rs6011248	C	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr20	62632693	rs60353771	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr20	62647997	rs116679693	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr20	62659937	rs41278240	C	T	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-2.231;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr20	62663136	rs7260907	A	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr20	62664353	rs114637353	G	A	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.718;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:240,71:0.23:311
chr20	62670294	rs76063107	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.782;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:109,38:0.26:147
chr20	62679437	rs115220371	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr20	62679873	rs183578654	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.178;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr20	62697751	rs4809251	T	C	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr20	62699626	.	A	G	1808.77	.	AC=1;AF=0.500;AN=2;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr20	62714783	rs6010717	C	G	8707.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr20	62715089	rs4337532	G	A	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	62715548	rs4431000	C	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	62737028	rs186068328	G	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.00;QD=39.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	62737039	.	G	C	638.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.11;QD=39.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	62737043	.	G	A	717.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.32;QD=39.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	62737046	.	G	A	637.77	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=39.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	62737075	.	G	C	300.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=0.967;QD=33.42;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr20	62737078	.	G	GATGATGGGGGT	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=0.967;QD=32.53;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr20	62737318	rs13036542	G	A	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	62836266	rs78521162	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr20	62836271	rs75307077	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr20	62836520	rs6062662	T	C	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:112,206:0.65:318
chr20	62839888	rs59834539	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.998;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr20	62851020	rs6122274	T	C	6380.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:71,149:0.68:220
chr20	62851036	rs6122275	C	G	8377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.56;ReadPosRankSum=1.809;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:103,201:0.66:304
chr20	62851047	rs6122276	C	T	9480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=-0.629;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:121,261:0.68:382
chr20	62868043	rs2983431	A	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.874;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:51,23:0.31:74
chr20	62868641	rs147522345	G	T	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:58,136:0.70:194
chr20	62871009	rs3003148	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr20	62871232	rs3003149	C	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.137;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:265,78:0.23:343
chr20	62871295	rs200168510	C	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.598;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr20	62871658	rs2427624	G	T	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:69,151:0.69:220
chr20	62903535	rs11906201	T	C	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	62903550	rs11905831	A	G	8753.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	62903729	rs11907696	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	62904542	rs6062361	A	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	62905090	rs148085913	T	TTTC	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	62959363	rs111569474	G	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr21	9825838	.	T	TGCG	3730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=48.35;MQRankSum=-7.308;QD=8.84;ReadPosRankSum=1.608;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:311,111:0.26:422
chr21	9825916	.	G	A	5941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=1857;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=46.64;MQRankSum=-8.938;QD=3.20;ReadPosRankSum=0.044;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:1404,451:0.24:1855
chr21	9825939	.	T	C	30430.77	.	AC=1;AF=0.500;AN=2;DP=3522;set=Intersection	GT:AD:AF:DP	0/1:1907,1602:0.46:3509
chr21	9825992	.	C	T	9358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DP=4121;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=45.66;MQRankSum=-12.709;QD=2.27;ReadPosRankSum=1.400;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:3229,891:0.22:4120
chr21	9826301	rs374753985	T	C	48978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=3179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.65;MQRankSum=-7.209;QD=15.47;ReadPosRankSum=-0.361;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:965,2202:0.70:3167
chr21	9826307	.	G	T	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DP=2668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.47;MQRankSum=0.305;QD=0.80;ReadPosRankSum=-2.246;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:2240,424:0.16:2664
chr21	9907202	.	C	T	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=3.337;QD=12.16;ReadPosRankSum=0.771;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:50,58:0.54:108
chr21	9907222	.	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=4.088;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=-4.900;QD=5.26;ReadPosRankSum=-0.103;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:129,54:0.30:183
chr21	9907271	.	A	G	3161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-9.384;QD=8.69;ReadPosRankSum=-0.563;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:202,162:0.45:364
chr21	9907345	.	C	T	5825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=603;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-10.944;QD=9.66;ReadPosRankSum=2.385;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:309,294:0.49:603
chr21	9907375	rs146622385	T	C	9439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.459;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-7.497;QD=19.23;ReadPosRankSum=1.330;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:236,255:0.52:491
chr21	9907384	rs140139768	G	A	9145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=54.43;MQRankSum=-6.514;QD=19.80;ReadPosRankSum=1.417;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:224,238:0.52:462
chr21	9907397	rs150294462	C	T	4471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-4.897;QD=10.70;ReadPosRankSum=0.475;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:198,220:0.53:418
chr21	9907416	.	C	T	3771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=2.962;MLEAC=1;MLEAF=0.500;MQ=53.24;MQRankSum=-2.111;QD=11.43;ReadPosRankSum=-0.176;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:151,179:0.54:330
chr21	9907480	.	G	T	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.903;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.96;MQRankSum=-0.232;QD=11.93;ReadPosRankSum=1.135;SOR=1.346;set=HC	GT:AD:AF:DP	0/1:51,42:0.45:93
chr21	9907503	.	C	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.458;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.74;MQRankSum=0.555;QD=12.43;ReadPosRankSum=-1.052;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr21	9907592	.	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.38;MQRankSum=1.068;QD=7.40;ReadPosRankSum=0.328;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr21	10793776	rs368569117	GGAGTT	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.967;QD=7.86;ReadPosRankSum=1.016;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr21	10793860	.	T	TGG	365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.695;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=5.678;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.670;QD=1.77;ReadPosRankSum=2.515;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:184,23:0.11:207
chr21	10793861	rs28362110	A	G	2142.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.698;QD=9.83;ReadPosRankSum=1.221;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:110,108:0.50:218
chr21	10793891	rs28490105	T	G	5262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.830;QD=11.85;ReadPosRankSum=-0.934;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:190,254:0.57:444
chr21	10793961	.	T	TGAATGGAATGGACTC	1164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.957;QD=3.75;ReadPosRankSum=3.896;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:263,48:0.15:311
chr21	10794022	rs28971978	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.87;SOR=1.668;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	10794047	rs28970391	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.015;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr21	10862599	rs3883945	C	T	2565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.627;QD=4.96;ReadPosRankSum=0.668;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:360,157:0.30:517
chr21	10862618	rs3916251	T	C	12338.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:170,429:0.72:599
chr21	10862846	rs3916645	A	T	19949.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,724:1.00:724
chr21	10862874	rs1807747	A	G	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:552,251:0.31:803
chr21	10862893	rs376900399	G	A	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:656,274:0.29:930
chr21	10862947	rs3883944	G	A	5467.77	.	AC=1;AF=0.500;AN=2;DB;DP=1145;set=Intersection	GT:AD:AF:DP	0/1:798,340:0.30:1138
chr21	10863087	rs28521368	T	G	18225.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr21	10863207	.	G	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.63;MQRankSum=-1.854;QD=10.58;ReadPosRankSum=-0.151;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr21	10906894	rs200860223	G	A	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.763;QD=3.74;ReadPosRankSum=-1.588;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:551,193:0.26:744
chr21	10906989	rs210498	C	T	4611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-2.143;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:473,265:0.36:738
chr21	10910253	rs1828001	G	T	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:128,194:0.60:322
chr21	10910291	rs150480	C	T	12607.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,490:1.00:492
chr21	10910311	rs9996	T	G	15409.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:2,599:1.00:601
chr21	10910347	rs150482	A	G	17659.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:2,695:1.00:697
chr21	10916226	rs61365894	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr21	10916290	rs61249862	T	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-2.815;QD=4.18;ReadPosRankSum=-0.962;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:100,40:0.29:140
chr21	10916293	rs150483	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.74;QD=30.39;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	10916322	rs210506	G	A	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:82,125:0.60:207
chr21	10919969	rs4913680	C	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.285;QD=3.77;ReadPosRankSum=-0.558;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:89,34:0.28:123
chr21	10920041	rs4913553	C	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-0.949;QD=2.42;ReadPosRankSum=0.493;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:267,71:0.21:338
chr21	10920067	rs4913681	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-1.114;QD=2.46;ReadPosRankSum=-2.218;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:254,69:0.21:323
chr21	10920098	rs212146	T	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr21	10935004	rs6582917	A	T	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=0.128;QD=7.82;ReadPosRankSum=0.901;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:97,71:0.42:168
chr21	10935116	rs625018	T	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr21	10941784	rs60630159	AT	A	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr21	10942036	rs2019999	T	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,19:0.25:76
chr21	10942756	rs1810540	G	A	2944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.405;QD=3.28;ReadPosRankSum=-0.579;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:676,223:0.25:899
chr21	10942924	rs113444703	CCTT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.126;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:60,8:0.12:68
chr21	10943003	rs1810856	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.289;QD=2.44;ReadPosRankSum=1.418;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:182,49:0.21:231
chr21	10943038	rs2020014	C	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.368;QD=3.20;ReadPosRankSum=0.911;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:165,53:0.24:218
chr21	10959806	rs212111	G	T	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.902;QD=7.08;ReadPosRankSum=-0.655;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:141,95:0.40:236
chr21	10959811	rs34027183	CA	C	1931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=2.490;QD=9.56;ReadPosRankSum=1.173;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:85,117:0.58:202
chr21	10959881	rs212112	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.399;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-2.835;QD=4.40;ReadPosRankSum=0.131;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr21	10969894	.	A	AATGG	4200.73	.	AC=2;AF=1.00;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	1/1:5,98:0.95:103
chr21	10970003	rs469719	G	A	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:201,134:0.40:335
chr21	10970017	rs468525	C	T	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:197,129:0.40:326
chr21	10971210	rs469872	G	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:59,64:0.52:123
chr21	10971453	rs1739180	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	10973787	rs469953	T	A	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr21	10973798	rs469961	T	C	6015.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	10973815	rs469960	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:77,64:0.45:141
chr21	10998165	rs364232	C	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr21	11026874	rs6582728	G	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr21	11027085	rs6421268	A	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr21	11027129	rs4577378	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr21	11038722	rs62209718	C	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.096;QD=8.94;ReadPosRankSum=-0.868;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:66,55:0.45:121
chr21	11038843	rs10433076	G	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:243,170:0.41:413
chr21	11038868	rs67736403	C	T	5921.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:237,165:0.41:402
chr21	11038882	rs12627085	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.088;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=13.996;MLEAC=1;MLEAF=0.500;MQ=52.64;MQRankSum=-8.011;QD=0.79;ReadPosRankSum=-8.070;SOR=1.952;set=HC	GT:AD:AF:DP	0/1:384,64:0.14:448
chr21	11038909	rs28473122	G	T	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=14.425;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-7.658;QD=5.38;ReadPosRankSum=-3.322;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:387,143:0.27:530
chr21	11038957	rs10433077	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-2.722;QD=0.82;ReadPosRankSum=0.086;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:555,99:0.15:654
chr21	11038998	rs1625628	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=48.92;MQRankSum=-4.652;QD=0.08;ReadPosRankSum=1.921;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:722,101:0.12:823
chr21	11039079	rs3888469	C	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-1.550;QD=0.43;ReadPosRankSum=1.102;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:818,128:0.14:946
chr21	11039142	rs2537265	T	A	3441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-1.339;QD=4.45;ReadPosRankSum=0.415;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:641,133:0.17:774
chr21	11039152	rs2740231	A	C	3653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=0.964;QD=4.78;ReadPosRankSum=-0.324;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:624,140:0.18:764
chr21	11049360	rs1640139	A	T	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.867;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-0.549;QD=2.34;ReadPosRankSum=-0.782;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:139,32:0.19:171
chr21	11049364	rs468502	C	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=7.661;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=0.730;QD=3.21;ReadPosRankSum=-0.406;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:140,41:0.23:181
chr21	11049395	rs467462	T	C	9142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-1.172;QD=32.65;ReadPosRankSum=0.052;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:38,242:0.86:280
chr21	11049395	.	TAATAGGGTC	CAATAGGGTC,CAATAGGGTG	2729	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=27;MQ=47.56;NF=143,113;NR=47,34;PP=313,2729;QD=1.83037480288;SC=TAGCGCCTAGTAATAGGGTCC;SbPval=0.61;Source=Platypus;TC=225;TCF=166;TCR=59;TR=190,147;WE=11049412;WS=11049385;set=Platypus	GT:AF:DP	0/1:0.84:225
chr21	11049404	rs2259244	C	G	4521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-1.763;QD=15.98;ReadPosRankSum=1.738;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:89,194:0.69:283
chr21	11049503	rs7280925	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-0.801;QD=0.46;ReadPosRankSum=0.074;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:187,25:0.12:212
chr21	11049516	rs468629	G	A	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.34;QD=32.72;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr21	11049592	rs3906134	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=1064;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.56;MQRankSum=0.700;QD=1.50;ReadPosRankSum=-0.693;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:951,112:0.11:1063
chr21	11049617	rs2740327	C	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=53.07;MQRankSum=-1.087;QD=0.12;ReadPosRankSum=-1.849;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:968,132:0.12:1100
chr21	11049621	rs28441174	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=1102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.12;MQRankSum=0.016;QD=0.32;ReadPosRankSum=0.514;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:957,145:0.13:1102
chr21	11058110	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr21	11058119	rs2261873	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr21	11058226	rs4913558	G	C	3817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-1.318;QD=6.94;ReadPosRankSum=5.303;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:338,212:0.39:550
chr21	11058227	rs2775343	T	A	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.005;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=16.813;MLEAC=1;MLEAF=0.500;MQ=54.37;MQRankSum=-14.918;QD=3.45;ReadPosRankSum=-10.252;SOR=2.098;set=HC	GT:AD:AF:DP	0/1:484,79:0.14:563
chr21	11058229	rs55883018	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.285;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=15.910;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-15.753;QD=1.49;ReadPosRankSum=-11.153;SOR=1.984;set=HC	GT:AD:AF:DP	0/1:494,86:0.15:580
chr21	11058349	rs209032	T	G	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=49.62;MQRankSum=7.676;QD=1.84;ReadPosRankSum=1.412;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:398,90:0.18:488
chr21	11058404	rs58094605	A	ACT	2359.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:23,64:0.74:87
chr21	11059734	rs75838613	C	T	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-4.081;QD=16.49;ReadPosRankSum=-1.825;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr21	11059735	rs2775349	T	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:5,97:0.95:102
chr21	11059744	rs57566895	A	G	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-4.242;QD=17.02;ReadPosRankSum=-1.543;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:49,44:0.47:93
chr21	11059841	rs77547988	C	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.350;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-2.151;QD=3.50;ReadPosRankSum=0.814;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:163,29:0.15:192
chr21	11059845	rs7364036	C	T	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=1.945;QD=8.01;ReadPosRankSum=0.933;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:127,74:0.37:201
chr21	11059853	rs75278999	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-1.991;QD=4.13;ReadPosRankSum=0.519;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:179,34:0.16:213
chr21	11059854	rs75079963	A	G	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-0.812;QD=6.51;ReadPosRankSum=0.106;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:159,54:0.25:213
chr21	11059877	rs7364059	T	C	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr21	11059897	rs6582758	A	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.663;QD=0.66;ReadPosRankSum=0.815;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:186,32:0.15:218
chr21	11059951	rs75112368	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.178;QD=1.67;ReadPosRankSum=0.196;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:108,25:0.19:133
chr21	11060013	rs2838200	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.099;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-3.330;QD=11.65;ReadPosRankSum=-1.007;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr21	11060026	rs57279991	G	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-3.502;QD=7.64;ReadPosRankSum=1.213;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr21	11060029	.	A	AAAT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-3.766;QD=10.59;ReadPosRankSum=1.203;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr21	11098626	rs1967649	G	A	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:273,258:0.49:531
chr21	11098674	rs1752238	T	C	22550.77	.	AC=2;AF=1.00;AN=2;DB;DP=923;set=Intersection	GT:AD:AF:DP	1/1:0,854:1.00:854
chr21	11098709	rs79633368	A	G	15628.77	.	AC=1;AF=0.500;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	0/1:621,438:0.41:1059
chr21	11098723	rs73151874	T	C	15574.77	.	AC=1;AF=0.500;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	0/1:600,432:0.42:1032
chr21	14756428	.	T	TAC	339.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:2,11:0.85:13
chr21	14756477	.	GTGTATA	G	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=2.260;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr21	14756479	rs371662963	GTATA	G	360.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr21	14757451	rs140515206	G	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.34;QD=24.61;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	14757565	rs2821832	C	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	14758516	rs2821833	T	A	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	14760151	rs2775777	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	14766093	rs2775805	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.51;QD=22.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	14778721	rs2747232	A	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	14916824	rs7280211	T	A	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	15373420	rs1297087	C	A	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	15516898	rs2822431	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	15516948	rs2822432	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	15516976	rs7283442	T	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	15646397	rs8129984	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	15660703	rs73342270	T	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	15660716	rs1153305	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	15663704	rs372000716	TA	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.371;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr21	15663777	rs148015529	AGTGTGTGT	A	1613.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	15748186	rs2822642	C	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	15755349	rs7281846	T	C	18310.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-1.253;SOR=0.224;set=HC	GT:AD:AF:DP	1/1:1,725:1.00:726
chr21	15870638	rs2274796	C	T	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	15884949	rs3761320	A	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	15893594	rs760345	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	15954660	rs2822787	T	C	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr21	15955911	rs2822793	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	15964920	rs466913	C	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	15966421	rs460852	T	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	15974409	rs456067	T	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	16015250	rs458292	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	16340289	rs2229741	C	T	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr21	17238521	rs147076784	AAT	A	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr21	17533030	.	CTCTTCTTCT	C	656.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;QD=36.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	17560174	rs10629120	T	TTCCTTCCC	2017.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.04;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	17603544	rs144664722	AT	A	56	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	18914386	rs73308228	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	18915218	rs2824341	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	18924337	rs716524	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	18937758	rs437470	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	19165617	rs113939661	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	19190427	rs243556	C	T	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	19506651	rs2824646	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	19506694	rs9977750	T	G	6618.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	19506715	rs2824647	C	T	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.00;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	19628809	rs200762308	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.063;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr21	19685405	rs7281534	A	G	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr21	19687376	rs2144203	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	19701421	rs68023548	GCT	G	2323.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	19713783	rs113178154	C	T	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	19744415	.	A	ATGTGTGTG,ATGTGTGTGTG	191.80	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:5
chr21	19756040	rs2824790	C	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	19770170	rs9974380	G	A	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	20058298	rs6517825	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	22643720	rs8127865	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	22656409	rs34246223	AT	A	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	22658544	rs111713483	TTTTGTGA	T	1763.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	22696881	rs11334381	TG	T	2738.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	26960189	rs2829806	T	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	26961086	rs2829807	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	26965100	rs2829809	C	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	26965148	rs1135638	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	26965205	rs1057885	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	26966317	rs13048408	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	26969703	rs1135618	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	26973663	rs140202502	A	ATATACT	5972.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=45.25;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr21	26976250	rs7278164	A	G	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr21	26978950	rs3989369	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	26979628	rs9653688	G	A	15897.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr21	27012088	rs118115569	C	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr21	27078428	rs2829870	T	A	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr21	27078487	rs145633766	TTTTG	T	1174.90	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:2,29:0.94:31
chr21	27086413	rs6516687	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	27086641	rs200636387	A	AC	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	27086916	rs8134513	C	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	27086938	rs149216934	CT	C	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	27087165	rs2829878	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	27141273	rs56048433	C	CATTT	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr21	27318366	rs45511595	T	C	3072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=-0.701;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:2,125:0.98:127
chr21	27318418	rs2409160	G	C	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	27326810	rs1967945	T	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	27327862	rs2251337	G	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	27348372	rs3737413	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	27369481	rs2051504	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	27382267	.	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.778;QD=0.51;ReadPosRankSum=0.701;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr21	27382362	rs11455808	A	AG	3575.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=39.73;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	27382417	rs2409166	C	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	27852724	rs966410	A	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	27945141	rs62216535	G	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	28209876	rs9982410	A	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	28210657	rs229042	T	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	28212760	rs436525	G	A	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr21	28215619	rs422381	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	28215826	rs373460567	C	CACA	4555.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	28215836	rs3838077	GC	G	3661.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	28215987	rs417301	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	28216038	rs422803	C	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	28216066	rs370850	C	T	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	28216240	rs451792	G	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	28216299	rs428616	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	28216445	rs408358	A	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	28216595	rs428785	C	G	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr21	28216692	rs445784	G	T	7256.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr21	28217178	rs434857	T	G	5352.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.114;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=1.261;SOR=0.315;set=HC	GT:AD:AF:DP	1/1:1,210:1.00:211
chr21	28217320	rs402007	C	G	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr21	28296324	rs151065	A	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	28302355	rs226794	A	G	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	28305477	rs2830586	T	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	28315761	rs75701406	G	A	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	30250555	rs2205446	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	30250615	rs2205447	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=25.27;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	30250812	rs2205448	T	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	30254695	rs2254507	C	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	30257418	rs1997605	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr21	30257560	rs1997606	C	G	15919.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr21	30257568	rs1997607	T	C	15734.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr21	30257729	rs2859734	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	30303388	rs58579273	G	GGT	351.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr21	30315681	rs2705666	T	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	30318466	rs2243552	T	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	30325875	rs2243491	A	T	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	30337060	rs180788955	A	T	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	30338153	rs141962268	C	CA	352.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.56;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	30338293	rs5843357	G	GC	1441.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	30341891	rs2254796	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	30357163	rs2245431	G	T	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr21	30357307	rs2245434	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	30391671	rs138840391	GAAA	G	224.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	30414400	rs149255317	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	30441901	rs150283390	G	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	30442475	rs2183569	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	30442481	rs2183570	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	30444331	rs58699995	T	TA	1246.74	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:11,68:0.86:79
chr21	30445774	rs2070611	G	C	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr21	30445948	rs2070610	G	A	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	30532146	rs66780570	TA	T	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:6,64:0.91:70
chr21	30693966	.	CTTTT	C	59.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.81;ReadPosRankSum=-1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr21	30698586	rs115785965	A	T	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	30699842	rs2239572	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	30969901	rs363431	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr21	30970005	rs363465	C	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr21	30973567	rs73350412	A	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	31026967	rs10637196	A	AAAAG	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	31045511	rs363513	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	31062070	rs363538	T	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr21	31062341	rs144481772	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	31233814	rs468206	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	31233892	.	GGGATT	G	1177.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.21;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	31233898	.	A	AACCAACACT	1177.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.07;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	31233900	rs55707309	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	31233904	rs142587327	G	GT	1095.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	31233994	rs468413	T	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	31587793	rs686364	A	G	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	31587954	rs55884670	A	G	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chr21	31655212	rs1557291	A	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	31661653	rs2832759	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr21	31661691	rs8127420	A	G	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr21	31692277	rs3804007	G	T	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	31692377	rs3804008	A	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	31709261	rs75743649	A	G	58.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	31720287	rs762377	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	31802768	rs2226548	G	A	9315.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr21	31803159	rs1539783	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	31803210	rs1539784	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	31812772	rs2832873	C	A	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr21	31869286	rs2298437	T	C	11666.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr21	31913981	rs5843453	AG	A	17851.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr21	31914000	rs1023364	T	A	19145.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr21	31964916	rs9305426	A	C	14350.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:1,546:1.00:547
chr21	31973516	rs198915	T	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	31973685	rs1961491	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	31992864	rs1702405	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	32119495	rs12053674	C	G	12874.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr21	32119576	rs2833074	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	32201822	rs9982910	G	T	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr21	32201835	rs9982675	A	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr21	32201866	rs9982755	A	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr21	32201951	rs9982775	A	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	32201969	rs35359062	GA	G	5113.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	32202106	rs2833118	T	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	32492680	rs142244677	A	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	32492911	rs61734755	A	G	10654.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr21	32499473	rs2070410	A	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	32524852	rs9305453	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	32525302	rs723470	A	C	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	32525345	rs723469	G	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	32554841	rs60440604	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr21	32575076	rs7282435	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	32575335	rs113733369	C	CA	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	32575405	rs2833335	C	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	32585809	rs2244187	C	T	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	32595688	rs55980668	A	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	32618037	rs56840563	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	32931958	rs73345683	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	32932309	rs79686674	T	C	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	33031974	rs7277748	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr21	33057312	.	T	TG	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr21	33057327	rs144860828	G	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	33064094	rs11351108	TA	T	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;MQ=60.95;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	33065598	rs7278895	T	C	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	33073985	rs204734	T	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	33312380	rs7280058	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	33312539	.	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.373;QD=2.99;ReadPosRankSum=0.509;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr21	33355760	rs737103	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	33368188	rs2070371	T	C	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	33370900	rs9305483	T	C	8643.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr21	33371540	rs2070372	T	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	33641152	rs8129993	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	33641240	rs57672040	A	AT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-1.022;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr21	33641251	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.658;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr21	33684415	rs2833761	A	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	33686912	rs115917390	G	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr21	33688865	rs7279896	A	G	12104.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr21	33691502	rs11402028	G	GC	971.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	33694224	rs3761342	C	G	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr21	33710014	.	C	CT	245.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-0.301;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr21	33717877	rs2833779	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	33719400	rs9981151	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	33719496	rs115250603	C	T	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr21	33719695	rs2070378	C	T	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	33721455	rs73903307	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	33721843	rs743306	T	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	33740637	rs7276783	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	33747784	rs144661928	G	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	33749533	rs4816431	A	C	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	33755726	rs80213703	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr21	33755763	rs2833795	G	A	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	33765320	rs374019516	AGGAAGAGGCGGGGCTGGC	A	2728.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	33765560	rs11702306	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr21	33785343	rs76961987	G	A	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	33840208	rs4816434	A	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	33840213	.	A	AATAT	1054.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	33840317	rs34740520	C	CATAT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	33867280	rs2096458	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	33949059	rs7520	G	A	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	33951068	rs9622	T	C	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	33956362	rs2833916	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	33956376	.	G	A	585.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	33956579	rs2017816	T	C	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr21	33964605	rs1783091	T	C	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	33974401	rs113336970	T	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	33974442	rs112097109	G	A	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	33974546	rs111702591	G	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	33974576	rs138091636	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	33979851	rs184109745	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-1.013;QD=3.18;ReadPosRankSum=0.728;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr21	33979858	.	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-0.862;QD=3.86;ReadPosRankSum=-1.025;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr21	33979925	.	A	G	259	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=3;HapScore=2;MGOF=28;MMLQ=24;MQ=55.93;NF=6;NR=8;PP=259;QD=20.9836580391;SC=AAAAAAACCCAACAAGTTTTA;SbPval=0.7;Source=Platypus;TC=15;TCF=7;TCR=8;TR=14;WE=33979933;WS=33979915;set=Platypus	GT:AD:AF:DP	1/1:1,14:0.93:15
chr21	33982072	.	C	CAA	1557.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;QD=40.99;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr21	33982092	rs112239279	G	C	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	33982112	rs112918603	A	G	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	33982185	rs111591095	C	T	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr21	33982420	rs112319532	A	G	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr21	33984566	rs113526973	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	33984580	rs112555612	T	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	33997466	rs701730	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	34003928	rs71640263	A	AAGTATT	8202.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=46.08;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	34014283	rs2833929	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	34017857	rs2406	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	34018437	rs844978	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	34050937	.	AAT	A	1822	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=3;HapScore=1;MGOF=30;MMLQ=27;MQ=60.33;NF=20;NR=16;PP=1822;QD=51.3333333333;SC=TAACAAATAAAATATAAAGTG;SbPval=0.73;Source=Platypus;TC=42;TCF=21;TCR=21;TR=36;WE=34050950;WS=34050927;set=Platypus	GT:AD:AF:DP	1/1:6,36:0.86:42
chr21	34050939	rs201012663	TA	T	4516.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=45.17;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	34050941	rs150500694	TA	T	4516.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=43.43;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	34050942	.	A	T	1236	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=30;MMLQ=27;MQ=60.29;NF=42;NR=21;PP=1236;QD=20.1709716277;SC=AATAAAATATAAAGTGCACAT;SbPval=0.55;Source=Platypus;TC=66;TCF=44;TCR=22;TR=63;WE=34050950;WS=34050927;set=Platypus	GT:AD:AF:DP	1/1:3,63:0.95:66
chr21	34059207	rs844975	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	34059352	rs2254562	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	34128717	rs7279405	G	A	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;MQ=59.87;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	34157085	.	GT	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.924;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr21	34157235	rs35174687	GT	G	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:11,56:0.84:67
chr21	34165864	rs2231391	C	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	34166190	rs74617086	A	T	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	34166343	rs2231390	C	T	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr21	34169181	rs762228	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	34169317	rs72564613	C	CT	2754.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	34399045	rs10653077	A	ACT,ACTCT	723.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/2:0.26,0.74:19
chr21	34399401	rs762178	A	G	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr21	34400097	rs146665636	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	34538065	rs11444667	C	CT	2493.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	34540594	rs11379155	C	CT	1148.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	34542280	rs116488337	C	T	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	34542303	rs41496746	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=37.32;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	34617213	rs2834158	T	C	3002.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=0.964;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr21	34624386	.	C	CATCTATCT	1317.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	34634878	rs1131668	G	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	34635053	rs3216172	G	GT	4512.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	34635065	rs9984273	C	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	34635079	.	CTT	C,CT	1247.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-2.467;SOR=0.715;set=HC	GT:AD:AF:DP	1/2:15,23,68:0.22,0.64:106
chr21	34638859	rs2239573	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	34640788	rs2834167	A	G	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	34649123	rs2285020	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	34660676	rs66527331	ACG	A	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;QD=26.13;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	34660707	rs67118950	CACAG	C	93.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.406;QD=3.47;ReadPosRankSum=1.360;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr21	34660709	rs66834406	CAG	C	337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-0.341;QD=12.51;ReadPosRankSum=-1.228;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr21	34666111	.	C	CA	115.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr21	34697264	rs2850015	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	34725002	rs17875845	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	34726127	rs2856973	T	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	34787312	rs9808753	A	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	34799350	rs11910627	C	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=3.461;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	34804966	rs1532	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	34809049	rs2040120	T	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=28.88;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	34823252	rs2834220	C	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	34828009	rs140433940	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	34837623	rs2248820	C	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	34837786	rs2243511	A	G	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	34871107	rs35013844	AT	A	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	34871133	rs7278879	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	34878454	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.447;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr21	34894623	rs2834234	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	34897113	rs8788	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	34900924	rs5843611	G	GA	610	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.233;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr21	34901062	rs57178645	TA	T	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.307;QD=6.46;ReadPosRankSum=0.105;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr21	34915324	rs1041745	CG	GC	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	34925142	rs13433428	C	T	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr21	34926260	rs13047599	C	T	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	34948684	rs34377180	G	GA	3136.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	34948696	rs34373121	GA	G	3412.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	34954602	rs77179527	AG	A	333.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	34959776	rs7283856	G	A	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	34969423	rs3761351	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	35012719	rs6517185	GG	CT	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	35134084	rs11444980	G	GC	3463.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	35138174	rs147654153	A	G	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	35237349	rs9984732	A	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr21	35237608	rs9976801	T	C	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	35247611	rs2298681	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	35247873	rs933130	C	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	35256000	rs13052780	T	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	35275955	rs9980730	G	A	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr21	35278944	rs114594182	G	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	35446136	rs79607614	C	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	35467372	rs11295804	AC	A	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	35467472	rs11295803	AG	A	4913.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr21	35467645	rs8129891	A	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr21	35469193	rs4817617	C	A	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr21	35469708	rs35685523	G	GA	89.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	35742722	rs9305548	C	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	35772295	rs3833347	A	AC	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	35774487	rs9980218	G	A	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	35774491	rs71677268	ATTT	A	4165.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	35821821	rs1805127	T	C	11567.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr21	35893737	rs8131131	T	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	35985895	rs915540	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	35985935	rs75518695	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	36041978	rs7280973	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	36042203	rs9680380	G	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	36042315	rs183914556	A	G	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	36079735	.	G	GCACACACACACACA,GCACACACACACA	288.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=28;set=Intersection	GT:AF:DP	1/1:1.00:8
chr21	36080204	rs6517253	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.42;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	36080290	rs6517254	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	36080444	.	AGT	A	74	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=35;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=74;QD=28.0;SC=AGCTCTGGGCAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=3;WE=36080453;WS=36080434;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr21	36088563	.	TGG	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr21	36206932	rs11702841	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	36253146	rs56243517	ATAACT	A	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	36410851	rs7275643	G	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	36410894	.	C	CTGTG	140.06	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.66;QD=35.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410896	rs62218490	C	G	149.10	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=37.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410898	rs62218491	C	G	150.10	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410900	rs62218492	C	G	150.10	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410902	rs62218493	C	G	150.10	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410904	rs62218494	C	G	150.10	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.14;QD=37.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410906	rs62218495	C	G	151.03	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.14;QD=37.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410908	rs62218496	C	G	151.03	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.92;QD=37.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	36410910	rs8126848	C	G	369.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.65;QD=46.22;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	36410945	rs62641634	A	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.35;QD=30.42;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	36419854	.	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-0.674;QD=14.79;ReadPosRankSum=1.960;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr21	36419856	rs199554224	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.792;QD=12.68;ReadPosRankSum=2.189;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr21	36419858	rs3989161	A	T	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.792;QD=25.42;ReadPosRankSum=2.189;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr21	36421036	rs8133634	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	36422282	.	AACAC	A,AAC	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.54;MQRankSum=0.000;QD=22.62;ReadPosRankSum=-1.861;SOR=1.079;set=HC	GT:AD:AF:DP	1/2:3,9,23:0.26,0.66:35
chr21	36422478	rs2071029	C	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	37408608	rs68024241	AACGT	A	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	37412752	rs2255858	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	37413946	rs2835243	C	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	37414194	rs11404455	C	CA	82.27	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,6:0.86:7
chr21	37420785	rs880221	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	37425955	rs762360	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	37425971	rs762361	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	37429679	rs7282629	G	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	37431265	rs2051395	G	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr21	37443156	rs113589610	T	TG	211.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	37443163	rs113287155	T	G	220.81	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	37443480	rs1005696	T	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	37443565	rs1005695	G	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	37507745	rs881711	C	T	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr21	37510224	rs16993929	C	T	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr21	37518362	rs2835286	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	37518706	rs1056892	G	A	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr21	37518893	rs113213749	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=2.024;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr21	37571667	rs7281674	T	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	37571692	rs2835316	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	37586877	rs2850079	T	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	37603125	rs75907001	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	37617630	rs4817788	T	G	12698.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr21	37619724	rs1023367	C	T	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	37619931	rs5843755	A	AT	1419.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.513;QD=16.90;ReadPosRankSum=-0.487;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:7,77:0.92:84
chr21	37623447	rs2298450	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	37635797	rs12626686	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	37642196	rs11700664	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	37649562	rs73381545	G	A	377.89	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr21	37652840	rs7281457	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	37653705	rs7277281	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	37664554	rs55884666	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.366;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr21	37721469	rs201185893	CAAAT	C	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=40.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	37729088	rs2835339	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	37760118	.	C	CT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.261;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr21	37763761	rs376106303	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.921;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr21	37769852	rs73902504	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	37787572	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=3.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=2.233;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:149,28:0.16:177
chr21	37833307	rs219780	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	37833751	rs219779	G	A	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr21	38081562	rs2070647	T	G	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	38081577	rs2070648	C	G	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr21	38092039	rs2070650	A	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38114292	.	C	CT	1356.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.23;ReadPosRankSum=-0.773;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr21	38114302	rs56795144	A	AT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.528;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr21	38139402	rs2835455	T	A	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr21	38139632	rs2073421	C	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	38302769	rs2073425	C	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr21	38338969	rs9980304	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	38378925	rs147954937	G	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	38380368	rs2277786	A	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	38380570	rs73393097	T	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38385789	rs58914763	C	T	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	38439504	rs2835570	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	38439686	rs11702061	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	38444863	rs2507733	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	38444881	rs73200245	G	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	38444995	rs7280542	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	38459725	rs2835583	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	38463868	rs147677870	ATTAT	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38467763	rs146841836	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	38470120	rs1108966	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38495185	rs11440324	G	GT	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	38495213	rs11440325	G	GA	815.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38495270	rs11440326	A	AT	1853.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	38498178	rs67628252	GT	G	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	38498185	rs66532388	GC	G	89.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	38512956	rs1133001	A	G	804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.18;ReadPosRankSum=1.097;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr21	38517021	rs1344047	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	38517058	rs764175	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	38520091	rs9978203	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38522353	rs60348296	GTT	G	96.50	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr21	38523266	rs3737540	C	A	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	38525198	rs2051162	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	38525356	rs1053808	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	38525652	rs767998	T	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	38528866	rs2835635	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	38528872	rs10706050	TG	T	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=41.51;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	38531863	rs4817852	T	C	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	38531921	rs1787365	C	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr21	38532058	rs34771928	TG	T	3470.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	38532068	rs113972351	G	GA	2826.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	38532086	rs34586966	TG	T	2861.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	38532192	rs34367119	A	AT	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	38532901	rs5843796	G	GT	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38532904	rs5843798	T	TA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.55;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38532910	rs5843800	A	AG	309.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38534228	rs11424055	A	AT	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38534234	rs57522570	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38538429	rs149804705	C	A	10649.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr21	38539673	rs1793885	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38539677	rs4988831	A	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38539681	rs1793886	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38539718	rs2000413	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	38539745	rs5843802	G	GA	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38539836	rs5843803	T	TA	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	38539844	rs2000415	G	A	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	38563725	rs2835655	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	38567902	rs2835659	C	T	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	38567911	rs7280251	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	38568009	rs1053966	G	C	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr21	38568308	rs6579	C	T	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	38570055	.	T	TAA	77	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=14;HapScore=2;MGOF=33;MMLQ=15;MQ=60.0;NF=4;NR=1;PP=77;QD=16.2;SC=TGAGAATTGTTAAAAAAAAAA;SbPval=0.66;Source=Platypus;TC=5;TCF=4;TCR=1;TR=5;WE=38570063;WS=38570045;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	38573716	rs137865908	T	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	38574018	rs1053984	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38599934	rs11300896	TG	T	2487.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	38600154	rs10716173	CG	C	568.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	38850640	rs928763	G	A	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	38862862	rs67837743	C	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	38865507	rs2835772	C	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	38997701	rs702859	G	A	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr21	39086965	rs2070995	T	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	39089242	rs3061015	ACT	A	1480.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	39089582	rs857961	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	39325234	rs2836061	C	T	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	39494630	rs2836159	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	39528455	rs2836172	A	T	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr21	39671447	rs3746876	C	T	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr21	39822650	rs2211871	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	39822906	rs9305648	G	C	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	39870310	rs2836441	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	39947747	rs2836527	C	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	40547387	rs9305670	A	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	40549289	rs2142111	G	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	40549466	rs14194	T	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr21	40551943	rs34227163	A	G	7137.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr21	40551944	rs3835285	G	GT	7129.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr21	40552408	rs7280375	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	40553845	rs6517522	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	40555160	rs34294410	C	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr21	40555351	rs13052882	G	C	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr21	40571246	rs1041439	A	G	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr21	40572072	rs2234543	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	40574519	rs114873562	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	40584598	rs6517529	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr21	40587003	rs11434832	G	GC	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	40587049	rs4818004	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	40590624	rs35571600	A	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	40597215	rs139986112	A	AAAG	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	40600313	rs11702268	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	40636354	rs58999088	TAAA	T	187.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.77;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr21	40642189	rs6517532	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	40642386	rs2836968	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	40646230	.	CGAGA	C,CGA	2247.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.255;QD=30.79;ReadPosRankSum=0.052;SOR=0.910;set=HC	GT:AD:AF:DP	1/2:2,16,55:0.22,0.75:73
chr21	40650621	rs973521	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	40650670	rs60360876	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	40652142	rs2836972	G	A	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	40684641	rs2272578	C	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40684861	rs2297258	C	G	177.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	40684897	.	GGGCGGGC	G	115.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.55;ReadPosRankSum=-1.383;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr21	40715132	rs2070867	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	40715175	rs2776308	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	40721611	rs2735313	A	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	40799955	rs2837028	A	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	40800371	rs2837029	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr21	40823902	rs11575939	C	G	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr21	40823981	rs6517549	G	A	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr21	40824161	rs2837037	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	40847011	rs874221	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	40847196	rs940625	A	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr21	40847249	rs760284	T	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	40969620	rs2091883	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	40969826	rs662571	G	C	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr21	40977826	rs506382	A	G	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	40978010	rs508141	T	C	8497.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr21	41032740	rs3746887	T	C	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr21	41117533	rs425320	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=24.56;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	41137362	rs9784201	A	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	41137499	rs12626544	A	G	15183.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr21	41137507	rs2205204	G	C	15520.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr21	41142958	rs61737685	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	41143018	rs74817033	T	A	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	41160242	rs456818	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	41165301	rs464574	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	41165462	rs2837225	C	A	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr21	41165677	rs463903	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	41173411	rs114602782	G	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	41297873	rs2037920	G	A	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	41297899	rs116671485	T	C	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr21	41297992	rs2037921	C	T	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr21	41384834	.	CT	C	149.70	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr21	41423812	rs11911000	G	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr21	41434671	rs2837408	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	41434841	rs2837409	T	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	41452034	rs2837424	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	41551175	rs3804022	G	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	41711016	rs3215894	G	GT	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=22.88;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	42064958	rs62223014	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	42065020	rs62223015	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	42551626	rs16998089	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	42598068	rs58677403	C	CT	224.80	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr21	42613925	rs3215895	GT	G	3330.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=23.29;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	42615293	rs2252576	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	42622657	rs960231	G	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	42622786	rs1046210	C	T	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	42688752	rs148108671	G	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	42694870	rs2838012	G	A	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr21	42717662	rs417708	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	42735719	rs2838029	G	A	14488.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr21	42767733	rs440364	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	42771176	rs2301803	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	42775180	rs459763	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	42775555	rs462161	A	G	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	42775652	rs56994553	T	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	42775687	rs73905359	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr21	42803840	rs456657	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	42803858	rs463856	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	42808015	rs468207	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	42808873	rs17000913	A	G	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	42811825	rs75281064	A	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	42811870	rs2838037	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	42812891	rs467960	C	T	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	42813933	rs145807679	A	AGTGTGT,AGTGTGTGT	769.25	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	0/1:0.88:26
chr21	42817582	rs469288	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	42817930	rs469390	G	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr21	42818106	rs467773	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	42818132	rs364199	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	42821113	rs2070229	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	42822983	rs1050080	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	42837951	rs149695119	TG	T	3606.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	42840568	rs73372170	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	42840580	rs462321	T	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	42843960	rs464431	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	42845383	rs17854725	A	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	42848684	rs9985159	C	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	42850966	rs73372193	A	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	42860307	rs422471	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	42860485	rs386416	G	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	43133198	rs62214243	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	43133242	rs58060925	A	T	574.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	43133243	rs10610453	AT	A	565.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	43133247	rs60605755	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	43161357	rs3746891	T	C	6168.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=-1.069;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:2,241:0.99:243
chr21	43164345	rs2277790	A	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	43169357	rs2838114	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr21	43187043	rs6586238	C	T	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr21	43187167	rs6586239	G	C	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr21	43221483	rs3850706	A	G	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr21	43221826	rs2236696	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	43222779	rs2838128	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	43224683	rs2298687	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr21	43224802	rs73373472	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	43230703	rs144568521	GAC	G	8201.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	43231043	rs73373495	G	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	43236252	rs28657504	A	G	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	43239972	rs28477638	A	G	11780.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr21	43240446	rs73375539	C	T	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	43243852	rs73357703	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	43246223	rs28559700	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	43254463	rs2839388	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	43255509	rs2839392	C	T	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr21	43256438	rs4920101	T	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	43258000	rs8127003	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	43258310	rs150670301	GA	G	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr21	43267109	rs73361521	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	43277548	rs73361551	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	43281873	rs73361556	C	T	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	43298954	rs202107842	C	CG	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	43299471	rs189786293	G	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	43314865	rs2839410	T	C	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr21	43325973	rs384749	A	G	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	43327117	rs2277795	C	T	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	43327856	rs3746906	A	G	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	43332606	rs28394571	T	A	117.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-1.711;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr21	43334669	rs3746907	G	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	43334896	rs3746908	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	43338302	rs2839421	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	43338328	rs2839422	C	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	43338400	rs2245036	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	43339143	rs10681050	C	CTGTG	6290.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	43339154	rs2277796	T	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	43342272	rs9974090	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=0.972;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr21	43362513	rs3746910	C	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	43413731	rs915837	C	T	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	43504228	rs7278485	T	C	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr21	43506485	rs749020	A	G	156.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	43510514	rs2839464	C	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	43521647	rs66994219	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	43521902	rs12483409	G	A	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	43522349	rs220109	T	C	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr21	43523972	rs11701371	G	C	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr21	43529515	rs220120	G	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	43531008	rs220126	T	C	8127.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:4,324:0.99:328
chr21	43531403	rs220127	C	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	43531632	rs220129	T	C	18850.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr21	43531808	rs220130	A	C	9246.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr21	43533619	rs73905556	C	T	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	43541402	rs145141100	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	43541478	rs113281382	C	CGTGT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	43543098	rs58867895	C	T	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr21	43546705	rs220157	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	43639332	.	C	CCCGCCGCCGCCGCCGCCG	1526.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.390;QD=29.94;ReadPosRankSum=-1.656;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:4,47:0.92:51
chr21	43693584	rs225400	G	C	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr21	43693693	rs225401	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	43697180	rs112352275	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	43697195	rs2234718	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	43704849	.	AATGACACCAAACCCTGGGTACCCACTGCCTTCTGTTAGCTCGTGGGGCGTCTTC	A	96.73	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:14,0:0:14
chr21	43716241	rs11910928	A	G	6277.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	43720525	rs1023156	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	43732131	.	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	43732312	rs145732362	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr21	43735365	rs72561494	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	43766560	rs225334	G	A	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.67;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	43766572	rs140740671	T	TAAG	8230.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.73;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr21	43767500	rs225337	T	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	43769909	rs34333540	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	43770902	rs142860015	CT	C	704.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	43770926	rs5844113	CT	C	405.74	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr21	43782628	rs28476620	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	43783346	rs7281220	C	G	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr21	43783380	rs61735845	G	A	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr21	43796913	rs1078272	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	43803412	rs8129105	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	43805637	rs2839501	C	T	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	43805656	rs8130564	T	C	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr21	43823910	rs2277797	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	43824106	rs2277798	A	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	43824123	rs2277799	G	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	43826344	rs3746923	C	T	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr21	43826391	rs3746924	T	C	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr21	43829758	rs11702374	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	43838403	rs9974660	T	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	43846801	rs973344	TG	CA	9209.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	43847066	rs75224711	C	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	43852146	rs58639264	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	43852160	rs2839512	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	43852232	rs13052676	C	T	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	43852513	.	T	TTTCTGTAAGAATCTTCCATCAACTTCTCTGTGGATCATGGAGGAATGGTTCTCCATA	529.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.84;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	43854985	rs17114925	A	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	43857602	rs17114930	C	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	43863521	rs868092	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	43867383	rs17114952	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	43897355	rs11702140	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	43913040	rs114507956	T	C	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr21	43913124	rs116480603	G	A	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,365:0.99:367
chr21	43955427	rs228056	A	G	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	43955730	rs75815092	A	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	43959770	rs228063	A	G	4065.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.165;QD=24.35;ReadPosRankSum=-0.789;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr21	43959908	rs58348531	TC	T	274.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	43963447	rs17115062	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	43963759	rs228075	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	43967126	rs228082	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	43974226	rs2839550	T	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	43974317	rs75870471	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	43979061	rs75643163	C	A	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	43979289	rs2839551	C	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	43984091	rs57656887	A	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	43985016	rs915874	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	43985955	rs228104	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	43986117	rs36113965	T	TC	3617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.238;QD=24.44;ReadPosRankSum=2.260;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:2,146:0.99:148
chr21	43987379	rs75915592	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	43988406	rs76826708	A	G	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	43999983	rs453592	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	44000052	rs380152	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	44000063	rs380161	T	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.32;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	44000078	rs453647	T	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	44000366	rs388907	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	44107989	rs2839574	A	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	44118957	rs371074544	AT	A	233.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-2.332;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr21	44118962	rs73905746	T	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.553;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr21	44163839	rs6586344	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	44173971	rs57957426	CA	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.001;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.415;QD=3.17;ReadPosRankSum=-0.993;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr21	44174275	rs4919999	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	44180866	rs55905735	ACC	A	1682.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	44180890	rs7275566	T	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	44188249	rs68104891	GC	G	1826.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=35.13;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	44188475	rs34734386	C	CA	2902.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	44188485	rs2284977	T	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	44188504	rs67260236	C	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	44189166	rs1045382	T	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	44189172	rs3087994	A	C	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	44189387	rs55990449	G	A	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	44270402	rs6586251	C	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	44273858	rs15736	G	A	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr21	44274845	rs1107831	A	G	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr21	44275979	rs465663	T	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	44279668	rs149300976	C	CCAGGGGCCAGCGATCCA	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.59;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	44293744	rs2248490	C	G	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	44296933	rs71332377	AT	A	2306.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr21	44296935	rs116944707	T	A	2315.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.279;QD=38.60;ReadPosRankSum=0.809;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr21	44316954	.	AAT	A	91.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr21	44323412	rs35064727	C	T	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr21	44323590	rs4148973	T	G	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	44324365	rs10595	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	44327015	rs2839604	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	44328830	rs4148976	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	44371114	rs451887	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	44424689	rs3216136	G	GA	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	44430325	rs234781	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	44448763	rs170916	G	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	44448775	rs234728	G	A	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	44449095	rs234729	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	44475771	.	C	T	465.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	44475786	rs2124460	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.24;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	44475796	rs2124461	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.99;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	44476060	.	C	T	3604.77	.	AC=2;AF=1.00;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr21	44476759	rs234701	A	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	44478471	rs35196215	G	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	44486324	rs234708	T	C	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr21	44488755	rs5844149	G	GA	336.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.349;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr21	44515685	rs2839634	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	44527669	rs17115876	T	G	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr21	44836748	.	G	A	2952.77	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	44837555	rs430554	G	A	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	44837703	rs115990647	C	T	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	44839153	rs2838302	A	G	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr21	44839654	rs229346	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	44839685	.	G	A	482.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	44840382	rs657978	G	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	44841036	rs2006191	A	G	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr21	44841052	rs2006112	T	C	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	44841804	rs56265008	G	A	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr21	44845254	rs56171424	G	A	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	44845888	rs56796001	A	G	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr21	44985202	rs9637217	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.28;QD=30.02;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	44985272	rs9637218	C	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.83;QD=27.08;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	45011977	rs9974356	A	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	45053011	rs7277539	A	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45064296	rs2246602	C	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	45076443	rs2838341	A	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	45077865	rs2838342	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	45078035	rs2838343	C	T	6574.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=0.207;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,262:1.00:263
chr21	45089877	rs2838344	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	45092095	rs11909064	G	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	45092257	rs2251253	T	A	5175.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=0.433;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:2,206:0.99:208
chr21	45094534	rs80023485	G	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	45094642	rs147057584	GT	G	2534.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	45096206	rs2155722	G	A	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	45107285	rs2838348	C	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	45107518	rs7279959	A	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	45107562	rs9306160	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	45111512	.	A	AT	124	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=8;HapScore=2;MGOF=3;MMLQ=25;MQ=60.0;NF=0;NR=3;PP=124;QD=48.6666666667;SC=CCATTTCTTTATTTTTATTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=45111520;WS=45111502;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr21	45153751	rs13050307	A	G	61.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	45154041	.	CTGTGGGTGTGAGGGACGGGGCGGAG	C	1395.73	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	45170285	rs1106797	A	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	45170580	rs1079268	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	45172379	rs8134507	G	A	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr21	45175571	rs8128639	C	A	8228.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr21	45209714	rs2276245	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	45215046	rs2838371	T	C	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	45215055	rs2838373	C	G	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr21	45217559	rs2838378	T	C	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr21	45217753	rs2070538	C	T	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	45217929	rs2838379	T	C	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	45219312	.	T	TGGGCTCTCCGTTCCCGGGTGTTTCCCGCCTGTGCCCGTGCTCCGACCAGGGTGCACGAGC	311.74	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=51.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	45219524	rs4566449	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	45220483	rs915770	A	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	45220570	rs731935	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45220626	rs3216106	A	AC	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45220787	rs2329576	A	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	45222058	rs4818868	A	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45390749	.	TAAAAA	T	547.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45397766	.	C	CA	149.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr21	45404672	.	C	CT	343	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=11;HapScore=3;MGOF=7;MMLQ=20;MQ=59.73;NF=5;NR=19;PP=343;QD=14.7916666667;SC=CCAGAACAGTCTTTTTTTTTT;SbPval=0.68;Source=Platypus;TC=34;TCF=8;TCR=26;TR=24;WE=45404680;WS=45404662;set=Platypus	GT:AD:AF:DP	1/1:10,24:0.71:34
chr21	45432489	rs370244339	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	45478904	rs71326023	C	CGTAAT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45482800	rs2838478	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	45494183	rs2277805	G	A	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	45503121	rs2071152	G	A	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr21	45506819	rs1131999	T	C	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	45509650	rs2277806	A	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	45512094	rs3788104	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	45514141	rs11287102	TG	T	298.75	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45514149	rs9941801	A	G	307.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	45514168	rs4819371	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	45514188	rs4818879	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	45518131	rs2242950	A	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	45527112	rs72257518	GCTC	G	490.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	45547736	rs58898739	TA	T	362.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.965;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr21	45550460	rs11311220	TC	T	494.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	45553430	rs2187314	A	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	45560755	rs4819380	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	45642817	rs35694117	TA	T	812.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.446;QD=13.78;ReadPosRankSum=0.237;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:7,52:0.88:59
chr21	45643008	rs1048710	A	G	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	45649079	.	G	A	1733.77	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	45649494	rs7278772	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr21	45649640	rs7280853	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	45651413	rs3746962	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	45656774	rs11558819	C	T	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	45658474	rs56124762	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	45670770	rs7354779	T	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=2.340;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	45675904	rs73366550	T	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	45681153	rs2070565	T	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	45705988	rs3746964	T	C	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr21	45707515	rs3214074	CA	C	1815.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,76:0.96:79
chr21	45716135	rs28408186	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	45732116	rs1057034	C	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	45741854	rs4818904	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	45742115	rs2277808	G	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	45742822	rs11088947	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	45743594	rs12482028	C	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	45746225	rs4818906	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	45750346	rs2070573	C	A	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr21	45758043	rs115007048	C	A	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	45758918	.	C	CGGCTCCTCCCTCCGGCTCCGCCCTCGCCCCGCCCCGGCTCCTCCCTCCGGCTCCGCCCTCGCCCCGCCCG	2417.73	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr21	45759045	rs11870	C	T	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,380:1.00:381
chr21	45759197	rs73374031	G	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	45786709	rs45544142	G	A	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	45789008	.	G	T	1411.77	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45789011	rs34543751	A	AG	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45789026	rs45473508	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	45799164	rs2838556	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	45802429	rs45511897	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	45815573	rs67099101	AG	A	729.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=42.93;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45815575	rs150668005	G	A	737.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=43.40;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	45815580	.	TG	T	727.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=48.52;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	45815583	.	AGGATGTGG	A	592.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.17;QD=45.59;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45817620	rs1785436	T	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	45821794	rs1785437	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	45821815	rs45628937	G	A	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr21	45825975	rs1614122	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr21	45826434	rs1785454	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	45826462	rs1618355	C	A	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	45826717	rs45483495	C	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45826744	rs1785439	A	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	45834025	rs915779	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	45844751	rs9978351	A	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	45845807	rs762428	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	45854925	rs41277556	G	A	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	45938015	rs7276188	T	C	324.41	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr21	45942111	rs233230	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45959195	rs233316	G	A	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	45959312	rs233317	C	T	8213.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr21	45959386	rs233318	G	A	9628.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr21	45959556	.	A	ATG	18773.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=44.91;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr21	45959557	.	ATC	TGA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=24;MQ=59.65;NF=102;NR=135;PP=2937;QD=20;SC=ATGAAGAGGAATCCTCAGAGC;SbPval=0.57;Source=Platypus;TC=251;TCF=110;TCR=141;TR=237;WE=45959567;WS=45959547;set=Platypus	GT:AD:AF:DP	1/1:14,237:0.94:251
chr21	45959557	.	ATC	A	10898.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=5.075;QD=26.26;ReadPosRankSum=0.285;SOR=0.466;set=HC	GT:AD:AF:DP	1/1:3,412:0.99:415
chr21	45970718	rs233238	C	T	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr21	45970812	rs2329834	G	A	8072.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr21	45971108	.	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-3.597;QD=0.96;ReadPosRankSum=-2.437;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:194,39:0.17:233
chr21	45971162	rs199922020	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=6.323;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-9.200;QD=1.60;ReadPosRankSum=1.513;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr21	45971225	.	T	C	2554.77	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	45971335	rs28584336	C	T	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	45971380	rs6147532	A	AGTGAGTGAGTGT	2661.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	45977995	rs181516402	T	C	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:3,352:0.99:355
chr21	45978499	rs377549	T	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=44.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	45978503	rs435424	G	A	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=45.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	46000398	rs2020221	C	T	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	46011324	rs371522213	T	C	234.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.13;MQRankSum=-1.810;QD=21.34;ReadPosRankSum=-0.235;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr21	46011397	rs1699041	A	G	969.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.544;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.145;MLEAC=2;MLEAF=1.000;MQ=44.59;MQRankSum=-2.117;QD=24.87;ReadPosRankSum=-0.896;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr21	46020437	rs57269663	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	46021722	rs12627104	G	A	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	46032087	rs111668637	G	A	11533.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr21	46032094	rs411254	A	G	11701.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr21	46047322	rs62220925	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	46047348	rs62220926	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.47;QD=44.74;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	46047354	rs62220927	A	G	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;QD=43.03;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr21	46047418	rs8126553	C	T	8791.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr21	46047971	rs463217	T	C	9677.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr21	46048059	.	CA	AG	2895.77	.	AC=2;AF=1.00;AN=2;DP=65;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	46057391	rs9306108	A	G	8150.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=44.78;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr21	46057391	.	AGT	GGA	2947	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=24;MQ=59.91;NF=45;NR=40;PP=2947;QD=20;SC=CTTGGCGGGTAGTCGACTGCC;SbPval=0.55;Source=Platypus;TC=87;TCF=46;TCR=41;TR=85;WE=46057401;WS=46057381;set=Platypus	GT:AD:AF:DP	1/1:2,85:0.98:87
chr21	46057393	rs2838602	T	A	8150.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=44.78;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr21	46057548	rs4818947	A	C	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr21	46057634	rs61029972	TGT	CAA	25449.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;JOINED;set=Intersection	GT:AD:AF:DP	1/1:24,562:0.96:586
chr21	46057666	rs116100696	A	T	25328.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:24,596:0.96:620
chr21	46066764	rs4818952	C	T	11404.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr21	46067180	rs462007	C	T	15513.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr21	46074104	rs2073437	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	46074202	rs9984726	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr21	46077812	rs2838617	A	G	6266.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=-0.936;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:1,251:1.00:252
chr21	46077919	rs115752374	C	A	13126.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr21	46077946	rs9306111	A	G	13671.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:2,526:1.00:528
chr21	46078220	rs9306112	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	46086377	rs2838622	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	46086718	rs7275281	GA	CG	13929.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;JOINED;set=Intersection	GT:AD:AF:DP	1/1:4,519:0.99:523
chr21	46086757	rs7275298	GC	AT	11716.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr21	46101993	rs55881656	C	T	11564.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr21	46191270	rs11569	C	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	46233836	rs2838697	C	A	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr21	46234079	rs9306116	T	A	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	46271660	rs235315	A	G	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	46275047	rs235317	A	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	46280997	rs8129155	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	46281314	rs235276	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	46285229	rs2838719	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	46293692	rs235373	T	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	46293698	rs11388069	G	GC	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	46311813	rs235326	A	G	8184.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr21	46314907	rs235330	T	A	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	46321659	rs55865320	C	A	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr21	46321713	.	A	G	2514.77	.	AC=2;AF=1.00;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	46328099	rs760462	T	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	46330302	rs74539155	C	T	5368.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.052;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-0.124;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,209:1.00:210
chr21	46330685	rs61737078	G	A	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr21	46354001	rs56861217	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.98;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	46354055	rs9974172	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	46354750	rs7278337	G	A	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr21	46355531	rs11088970	A	G	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	46355710	rs11088971	A	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	46355833	rs11701737	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	46355856	rs35607013	A	AT	333.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.164;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr21	46357365	rs4818991	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=24.28;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	46379967	rs8132831	A	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	46389147	rs73906984	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	46396475	rs7283338	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	46396550	rs59730475	G	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46554604	rs11369444	A	AT	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.852;QD=4.79;ReadPosRankSum=3.726;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:89,73:0.45:162
chr21	46572572	rs420085	A	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	46685592	rs1006887	C	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	46697997	rs116304182	C	T	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	46698256	rs914215	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	46703256	rs11367431	TG	T	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	46825202	.	G	GCTGCGGGGCTGCGGGGGTCCCGGGGGTCCCGGGGGTCGGCTGGGTCCTGCGGGGGTC	1122.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=56.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	46825223	rs60499034	G	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=30.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	46875564	rs914230	T	C	14221.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.989;set=HC	GT:AD:AF:DP	1/1:0,543:1.00:543
chr21	46876083	rs2236451	A	G	9838.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr21	46876173	rs2236452	C	T	11157.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr21	46876306	rs11702494	G	A	10263.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr21	46876580	rs8133886	C	T	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr21	46895521	rs35616809	CAT	C	5665.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	46896458	rs80289899	T	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr21	46896489	rs79633299	T	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	46898174	rs2236464	T	C	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	46899947	rs9979845	G	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	46900214	rs9980181	G	A	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	46900546	rs28608951	C	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	46900856	rs9983599	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	46901973	rs12482088	A	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	46902180	rs12482563	T	C	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	46902273	rs2236468	A	G	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	46902380	rs12482373	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	46902390	rs2236469	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	46906627	rs2274808	C	T	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	46906711	rs2274809	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	46906960	rs3818662	A	G	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	46907287	rs9977268	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	46907479	rs9976784	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	46908355	rs11702425	T	C	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr21	46909516	rs8131819	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	46910321	rs2838947	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=40.28;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	46910351	.	C	CGTGGGT	1797.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=44.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	46910353	.	C	CCTGGGCCTCCATGTGCCCTCGT	1750.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=44.89;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	46910365	rs73228766	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=43.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	46910381	.	T	TGGGTTCCTGGGCCTCCATGTGCCCTCCC	1132.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=70.80;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	46910415	rs74504453	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.52;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	46911299	rs148502711	G	GC	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	46912658	rs11270246	G	GCCCGCCACTGCCCT	588.74	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:1,15:0.94:16
chr21	46912970	rs2297289	T	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	46913300	rs749625	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr21	46913517	rs749627	A	G	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	46914261	rs60331963	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	46914642	rs9977637	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46916516	rs5844240	AC	A	1669.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	46918574	rs2282120	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	46924425	rs149296338	CGGCCCCCCA	C	3063.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.47;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	46929553	rs78487064	C	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	46930865	.	AACACCCCACATACACCCCCAAACACCCCCCACACCC	A	1267.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.95;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	46930909	.	ACAACACACCCCCCC	A	1357.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46930924	.	C	T	1456.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.99;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46930929	.	ACATCC	A	2522.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=74.20;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	46930948	rs116087241	A	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.54;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	46930959	rs147164507	CA	C	2981.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.070;QD=28.67;ReadPosRankSum=-1.390;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr21	46931004	rs148407279	T	TAC	12234.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=40.25;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr21	46951556	rs12659	A	G	10085.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr21	46952094	rs914231	T	C	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	46957794	rs1051266	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr21	46957916	rs1131596	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	46957982	rs13052294	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	47269877	rs114643436	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	47320377	rs2075891	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	47320425	rs7281638	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	47320605	rs2075890	G	A	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47320633	rs2075889	T	C	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	47329352	rs2277812	T	C	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr21	47401760	rs7671	C	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	47404397	rs3746993	A	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	47406612	rs754507	C	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	47406801	rs138916267	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	47407362	rs62215498	C	T	14490.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,556:1.00:556
chr21	47409113	rs8129814	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	47409503	rs2277814	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	47410496	rs201105955	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=9.277;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-4.976;SOR=2.033;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr21	47410500	.	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=11.048;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-4.496;SOR=2.484;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr21	47410502	.	GATCCCGGCAGGA	G	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=10.364;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-3.954;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr21	47410626	rs1980981	T	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	47410931	rs1980982	T	C	7756.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr21	47412751	rs2850173	A	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	47412840	rs2075893	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	47417147	rs148786363	CCAGGCCCTTCGTG	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	47417206	rs11701583	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	47417415	rs2276254	C	A	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr21	47417432	rs3216137	A	AG	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	47417776	.	C	T	334.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47417975	rs3737437	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	47418728	rs141212516	C	CT	1236.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.08;ReadPosRankSum=0.874;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,53:0.95:56
chr21	47419100	rs144358858	G	A	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	47419697	rs8131101	C	T	5569.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	47419706	rs11464071	C	CG	5014.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	47419747	rs8131632	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	47419770	rs73908116	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=47.48;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	47419775	.	C	CGTGAAGATCATAGGGGGACGT	1177.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=43.62;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47419788	.	G	GA	502.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=41.89;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47419794	rs8126900	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	47419804	rs8131227	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	47420565	rs142824931	AGGAGGGCGGCCGGGGAG	A	5716.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	47420726	rs7276098	C	G	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr21	47420761	rs7283989	G	A	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	47420769	rs7276782	A	G	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.967;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47421315	rs11701124	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	47421793	rs8132377	C	T	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	47421797	rs8131313	G	A	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47421864	rs8132521	C	T	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	47422412	rs35796750	C	T	12650.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr21	47422639	rs2236485	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	47422644	rs2236486	G	A	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	47422679	rs2236487	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	47423133	rs2236489	C	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr21	47423233	rs59769541	C	T	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	47532544	rs1010688	C	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	47536546	rs762438	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	47537666	rs5844252	T	TG	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	47537882	rs7279347	G	A	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	47537973	rs115156393	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	47538050	rs7279535	G	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	47538960	rs2839110	G	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr21	47539790	rs3737362	A	G	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr21	47539884	rs114994097	A	C	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr21	47542220	rs2070578	C	T	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	47542654	rs5844253	G	GC	2215.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	47542861	rs915786	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	47544451	rs36033678	GC	G	909.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr21	47544454	rs369935000	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr21	47544541	rs3746995	C	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	47545155	rs2839113	A	G	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	47545768	rs1042917	G	A	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr21	47545823	rs13052956	G	A	16097.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr21	47545826	rs13046639	C	T	16097.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr21	47545913	rs2839114	G	A	10151.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,391:1.00:392
chr21	47546244	rs13050660	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47551833	rs7279622	C	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	47556793	rs12774	C	T	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	47556882	rs79622089	G	A	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	47557074	rs9284510	A	G	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr21	47558473	rs1047179	G	C	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	47565670	rs191178818	C	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=8.218;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=0.083;QD=9.60;ReadPosRankSum=-0.092;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr21	47571383	rs34248722	C	CA	1092.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	47575372	rs2277820	C	T	8552.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr21	47581734	rs3747001	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47609510	rs9717	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47612512	rs146297977	C	CTG	4586.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	47614469	rs2254524	A	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	47614528	rs61735802	C	T	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr21	47627245	rs2839144	C	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47635302	rs5844259	T	TC	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;MQ=60.37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47635545	rs60322177	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	47635856	rs2839153	C	G	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47641700	rs2839157	G	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47641996	rs2280959	C	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	47642016	rs2280958	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47647618	rs10550493	GAA	G	3022.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.257;QD=19.25;ReadPosRankSum=2.245;SOR=0.398;set=HC	GT:AD:AF:DP	1/1:19,138:0.88:157
chr21	47648729	.	CCCCGCCCCT	C	1928.73	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	47656664	rs16979006	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47662899	rs56371413	CA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=1.120;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr21	47662920	rs60691594	C	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47665116	rs150712767	GAAGA	G	2724.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	47666332	rs2839169	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr21	47669648	rs2330353	T	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	47671690	rs2839984	A	G	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	47674275	rs2250213	G	A	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr21	47674460	rs16979014	G	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr21	47676711	rs2839173	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	47676837	rs17183017	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	47676934	rs2839174	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	47678774	rs2839178	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	47681127	rs2839180	T	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	47685787	rs9637172	T	C	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr21	47685939	rs2839181	A	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	47686152	rs2839182	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	47686174	rs4818831	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	47695395	rs2839191	C	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	47703455	.	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.915;QD=0.90;ReadPosRankSum=0.073;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr21	47705237	rs17176131	T	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	47707039	rs71318058	T	TAAAAA	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.38;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	47707050	rs61182475	T	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	47711229	rs2276257	A	G	1446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.281;QD=24.52;ReadPosRankSum=1.819;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr21	47716230	rs1888539	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	47717350	rs2839206	C	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47717616	rs8651	G	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	47717686	rs2839207	G	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	47721985	rs112899928	A	ATGG	13346.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=3.868;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.191;QD=41.32;ReadPosRankSum=-0.689;SOR=0.423;set=HC	GT:AD:AF:DP	1/1:13,310:0.96:323
chr21	47722341	rs116302584	G	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	47722391	rs1556337	A	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	47722578	rs1974171	G	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	47734659	rs13047478	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	47744037	rs3842460	CG	C	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=28.61;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	47777063	rs2839223	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	47777222	rs2839224	A	G	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	47783796	rs8131546	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	47786449	rs9637173	T	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	47786494	rs2839226	C	T	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr21	47786817	rs2839228	C	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	47787002	rs6518289	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	47842018	rs75024419	G	A	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr21	47847619	rs77075366	G	C	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	47852151	rs5844270	A	AG	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	47858272	rs2051190	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47860217	rs2073377	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	47862624	rs2839262	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	47864560	rs143709505	CTTT	C,CT	845.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=0.692;SOR=0.957;set=HC	GT:AD:AF:DP	1/2:3,19,12:0.56,0.35:34
chr21	47864813	rs2249970	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.25;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47864823	rs2073381	G	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	47904569	rs2032111	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	47917047	rs11315869	CT	C	2803.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	47931245	rs1029262	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	47953725	rs3747010	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	47961634	rs2070434	T	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	47966810	rs2839318	G	C	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr21	47970581	rs2255397	G	A	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr21	47971539	rs2255526	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	47974582	rs1107065	A	G	7778.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr21	47978321	rs34920477	G	GC	4397.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	47980570	rs2070429	A	G	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	47983657	rs762253	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	47986633	rs3819044	C	A	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	47987167	rs2839337	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	48022230	rs1051169	C	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	48022375	rs2186358	C	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	48063387	.	C	CA	39	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9999;HP=17;HapScore=3;MGOF=12;MMLQ=15;MQ=58.68;NF=2;NR=1;PP=39;QD=14.0;SC=ATAATATAGCCAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=48063396;WS=48063377;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr21	48063476	rs10854485	C	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	48081914	.	A	ATGGGGCGCGCAGGAGGGGG	488.74	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.87;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	16157496	.	A	G	99.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.00;QD=19.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	16157883	rs368849066	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr22	16157913	.	T	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.76;MQRankSum=-5.045;QD=4.06;ReadPosRankSum=0.067;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr22	17054103	rs4008588	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr22	17054332	rs143558414	T	C	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,79:0.46:171
chr22	17055569	rs3729688	T	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr22	17060419	rs142683207	T	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr22	17063359	rs2006108	A	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	17072483	rs2236639	A	G	20602.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr22	17073066	rs5747988	A	G	13973.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr22	17177682	rs3020747	C	A	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:44,7:0.14:51
chr22	17178184	rs75419260	T	C	3101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-8.858;QD=7.33;ReadPosRankSum=-0.026;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:251,172:0.41:423
chr22	17178601	rs116224412	G	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:77,105:0.58:182
chr22	17178643	rs115342477	C	A	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.886;MLEAC=1;MLEAF=0.500;MQ=47.39;MQRankSum=-7.715;QD=10.54;ReadPosRankSum=-1.637;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:53,54:0.50:107
chr22	17280822	rs5748648	G	A	14453.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr22	17325824	rs73388042	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:94,72:0.43:166
chr22	17326924	rs12158343	G	A	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:170,148:0.47:318
chr22	17327068	rs165588	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	17445502	rs5748765	A	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr22	17446991	rs4819925	C	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	17449076	rs5748768	C	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	17469026	rs5992604	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:96,69:0.42:165
chr22	17488727	rs5748800	A	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr22	17488823	rs11378060	C	CG	5605.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	17565932	rs917864	T	C	18972.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:1,729:1.00:730
chr22	17565974	rs917865	G	C	15283.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr22	17566206	rs2270241	G	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	17566229	rs2270242	T	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	17578111	rs41464554	C	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	17581128	rs41383449	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr22	17582776	rs17807076	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr22	17586471	rs2241046	C	T	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	17586583	rs2241047	C	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	17586609	rs144979983	GT	G	2529.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	17586614	rs35078252	G	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	17586631	rs4819959	G	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	17586715	rs56736183	ATCAC	A	6272.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	17589209	rs879577	C	T	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	17589567	rs879575	C	T	9552.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:403,468:0.54:871
chr22	17590269	rs4819555	C	T	19242.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr22	17590744	rs1468488	T	C	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	17600148	rs9605220	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	17601199	rs150392725	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr22	17601466	rs75243280	T	C	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:67,84:0.56:151
chr22	17601748	rs9606620	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr22	17602839	rs5992629	G	A	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	17603477	rs5748871	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr22	17603503	rs28360663	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr22	17603716	rs57789749	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr22	17619076	rs16982020	C	G	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:300,233:0.44:533
chr22	17619712	rs113949524	A	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr22	17623880	rs34058953	G	GC	4160.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr22	17625829	rs55754435	G	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:159,162:0.50:321
chr22	17629544	rs3214349	G	GA	860.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	17630378	rs2286956	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	17630486	rs1034859	C	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	17640022	rs11550530	G	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:63,84:0.57:147
chr22	17640176	.	G	GC	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.321;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:89,35:0.28:124
chr22	17646444	rs11912494	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr22	17669151	rs2231496	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr22	17669199	rs7284498	G	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:120,107:0.47:227
chr22	17669306	rs2231495	T	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:205,188:0.48:393
chr22	17669406	rs9619005	G	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr22	17669462	rs2231494	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr22	17670786	rs2231493	G	A	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr22	17670807	rs2231492	C	T	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:144,169:0.54:313
chr22	17671149	rs79914509	G	T	4533.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:174,212:0.55:386
chr22	17672755	rs2231490	C	A	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:123,102:0.45:225
chr22	17680306	rs144627322	T	TCCTCCCTCCCCTCCTCTATCCTCTTCC	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.337;QD=22.99;ReadPosRankSum=0.673;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr22	17680519	rs17807317	A	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:157,99:0.39:256
chr22	17690409	rs362129	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,63:0.49:128
chr22	17956759	rs4819593	C	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	17978600	rs7284169	G	C	6036.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr22	17984065	rs73389138	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:98,77:0.44:175
chr22	18003341	rs73159550	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr22	18027817	rs149314645	CTT	C,CT	903.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.069;SOR=1.085;set=HC	GT:AD:AF:DP	1/2:6,25,33:0.39,0.52:64
chr22	18030096	rs66840782	TA	T	1368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=4.887;QD=6.08;ReadPosRankSum=-0.549;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:86,139:0.62:225
chr22	18032459	rs201209827	GTTTTTTTTTTTTTTT	G	1390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=23.068;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.654;QD=25.29;ReadPosRankSum=1.671;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr22	18062891	rs1123031	T	C	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr22	18070129	.	C	A	267.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr22	18072285	rs372301607	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,84:0.54:155
chr22	18075417	rs111932467	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:101,93:0.48:194
chr22	18075566	rs150344720	CT	C	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.663;QD=7.56;ReadPosRankSum=-0.294;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr22	18075646	.	C	T	412.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr22	18077280	rs76360481	T	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr22	18077334	rs76511316	G	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr22	18077386	rs35683311	CA	C	5079.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:15,259:0.95:274
chr22	18082669	rs5992075	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr22	18082708	rs5992076	A	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.679;QD=13.94;ReadPosRankSum=0.000;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr22	18084001	rs5747254	T	G	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr22	18084033	rs3747023	C	T	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr22	18095734	rs5992080	C	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr22	18095954	rs373352619	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.40;ReadPosRankSum=1.640;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr22	18111431	rs7751	T	C	5295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.193;QD=8.67;ReadPosRankSum=0.659;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:333,278:0.45:611
chr22	18165898	rs66653945	CA	C	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.475;QD=5.44;ReadPosRankSum=-0.565;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr22	18171650	rs5013026	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr22	18178859	rs2257083	C	T	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	18179100	rs12160637	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr22	18209613	rs4488761	A	G	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:176,172:0.49:348
chr22	18218441	rs4819624	A	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr22	18218464	rs181382	T	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	18218475	rs181383	C	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	18220831	rs11538	A	G	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:80,60:0.43:140
chr22	18222263	rs181390	A	G	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:211,183:0.46:394
chr22	18222350	rs4819464	G	A	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr22	18232768	rs8190289	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr22	18232782	.	C	T	484.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr22	18257138	rs443912	T	G	5520.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=2.086;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:2,217:0.99:219
chr22	18274092	rs451548	G	C	5286.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:259,245:0.49:504
chr22	18291791	rs423710	C	A,G	8607.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=387;set=Intersection	GT:AF:DP	1/2:0.55,0.45:372
chr22	18291872	rs77991935	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr22	18293650	rs436590	A	G	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	18300063	rs145022846	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr22	18300240	rs5992854	T	C	4762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.883;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:204,233:0.53:437
chr22	18301693	rs8135914	T	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:86,73:0.46:159
chr22	18304392	rs2305006	G	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr22	18304695	rs5992112	A	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr22	18310363	rs5992872	C	T	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=0.390;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr22	18310367	rs5992121	T	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.371;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr22	18310700	rs143017613	T	TACAC	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr22	18314985	rs77650951	C	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr22	18325378	rs2895998	G	C	7469.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:400,383:0.49:783
chr22	18325541	rs61626259	T	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr22	18347851	.	T	TTTTA	273.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr22	18347916	rs9605418	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr22	18354783	rs5992128	T	G	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:238,222:0.48:460
chr22	18368614	rs79989383	C	T	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:250,210:0.46:460
chr22	18370066	rs4819472	C	A	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr22	18376646	rs113505363	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr22	18378002	rs2034113	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr22	18379160	rs3213927	T	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr22	18562888	rs464541	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr22	18609065	rs2234329	G	T	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.866;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:118,80:0.40:198
chr22	18609854	rs361776	G	A	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr22	18613603	rs2234338	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr22	18628632	rs5747493	C	T	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:233,211:0.48:444
chr22	18628715	rs361534	C	T	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	18643136	rs112211874	GAT	G	1080.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr22	18643166	rs2543716	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr22	18649922	rs9605536	A	G	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	18650682	rs3180408	C	T	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:246,308:0.56:554
chr22	18655860	rs4819484	G	A	15546.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr22	18775403	rs201208860	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.539;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.462;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr22	18896189	rs425576	T	C	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:192,206:0.52:398
chr22	18896301	rs5746636	G	T	2888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.926;QD=11.03;ReadPosRankSum=1.244;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:122,140:0.53:262
chr22	18897416	rs436638	C	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	18897477	rs73378852	C	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr22	18897756	rs28480136	C	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr22	18898289	rs441862	G	C	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:108,120:0.53:228
chr22	18898523	rs41277586	C	T	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:142,131:0.48:273
chr22	18898874	.	G	A	255	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=27;MQ=54.82;NF=4;NR=11;PP=255;QD=19.3180808365;SC=TGGGGGCAGAGGCTCAGATTC;SbPval=0.94;Source=Platypus;TC=26;TCF=12;TCR=14;TR=15;WE=18898882;WS=18898865;set=Platypus	GT:AD:AF:DP	1/0:11,15:0.58:26
chr22	18898908	.	A	G	57	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=27;MQ=55.04;NF=4;NR=5;PP=57;QD=10.1968013941;SC=TGGGGGCAGAAGCTCAGATTC;SbPval=0.42;Source=Platypus;TC=24;TCF=13;TCR=11;TR=9;WE=18898916;WS=18898898;set=Platypus	GT:AD:AF:DP	0/1:15,9:0.38:24
chr22	18899016	rs428224	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr22	18900669	rs383964	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	18900750	rs372055	G	A	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	18901004	rs450046	C	T	11807.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr22	18901090	rs385440	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	18904414	rs455072	A	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	18904606	rs375115	T	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	18907124	rs1076466	G	A	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr22	18908875	rs1808320	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	18910257	rs2008912	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr22	18910284	rs5844366	AC	A	4715.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	18910301	rs2008904	A	G	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=45.24;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	18910307	rs2008903	G	A	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=43.25;SOR=1.325;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	18910756	rs2008878	C	G	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	18912678	rs4819756	A	G	13734.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr22	18923745	rs2008720	G	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	18923848	rs71299315	T	TCCCGC	1090.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.408;QD=37.61;ReadPosRankSum=-1.423;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:2,27:0.93:29
chr22	19026613	rs2072123	A	G	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr22	19028476	rs2073775	T	C	6855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=-1.178;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:223,180:0.45:403
chr22	19028480	rs2073774	T	C	7093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-1.356;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:234,193:0.45:427
chr22	19034079	rs715539	A	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr22	19034240	rs2012929	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:70,58:0.45:128
chr22	19048349	rs114944502	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:122,90:0.42:212
chr22	19048413	rs2238739	A	G	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:287,192:0.40:479
chr22	19050599	rs111427599	T	TCCATGTC	3124.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:171,77:0.31:248
chr22	19050635	rs5993488	G	A	4195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-3.045;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:294,218:0.43:512
chr22	19050878	rs9617765	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr22	19055893	rs138453013	C	CA	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr22	19077049	rs2800960	C	T	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	19109609	rs62223868	A	C	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr22	19109753	rs11550628	A	G	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.683;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:93,79:0.46:172
chr22	19109764	rs11550626	A	G	2601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.445;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:84,68:0.45:152
chr22	19109812	rs11550627	A	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr22	19118701	rs3747050	T	C	5698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.774;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:396,294:0.43:690
chr22	19119751	rs1052763	C	T	8459.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:472,426:0.47:898
chr22	19119938	rs1052773	G	A	8001.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:447,407:0.48:854
chr22	19122498	rs2240110	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr22	19126631	rs2298273	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr22	19137658	rs34341950	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr22	19163577	rs35359423	C	CAT	2499.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	19170888	rs115478161	C	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:60,84:0.58:144
chr22	19172006	rs1018764	T	C	13257.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr22	19175721	rs114757757	G	A	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr22	19184095	rs1061325	T	C	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:117,117:0.50:234
chr22	19187375	rs9605957	G	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr22	19187427	rs2236759	C	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr22	19189003	rs11386977	A	AC	8804.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	19197896	rs698423	T	C	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr22	19207208	rs5993560	G	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr22	19211665	rs9604935	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr22	19217613	rs2800963	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=40.46;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	19217617	rs113338080	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=46.67;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	19217620	.	G	GT	862.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;QD=45.41;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	19217621	rs9306213	G	T	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=45.93;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	19245309	rs76629899	C	T	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-1.436;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:33,41:0.55:74
chr22	19278973	rs11704250	G	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.34;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	19278973	.	GCCGCAGCC	CCCGCAGCC,CCCGCAGCT	139	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=3;HapScore=4;MGOF=150;MMLQ=23;MQ=55.04;NF=10,5;NR=1,0;PP=139,103;QD=15.7973829588;SC=CGCCCGGGACGCCGCAGCCCC;SbPval=0.64;Source=Platypus;TC=11;TCF=10;TCR=1;TR=11,5;WE=19278989;WS=19278963;set=Platypus	GT:AF:DP	0/1:1.00:11
chr22	19278981	rs115386229	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.380;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-1.110;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr22	19279009	rs145091034	G	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr22	19279315	rs7510753	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=1.171;QD=8.32;ReadPosRankSum=-1.469;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr22	19318622	rs1210690	T	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	19346835	rs9605996	G	A	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr22	19419093	rs8140291	A	G	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	19420306	rs12165902	C	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr22	19423250	rs7575	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:126,86:0.41:212
chr22	19438344	rs8137166	G	A	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.700;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:138,110:0.44:248
chr22	19443311	rs9618575	G	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:127,79:0.38:206
chr22	19443931	rs5748212	G	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr22	19455376	rs5746742	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr22	19455605	rs5748222	G	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr22	19455871	rs756657	A	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,69:0.57:122
chr22	19458224	rs5993648	C	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=1.516;QD=10.46;ReadPosRankSum=-1.169;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr22	19462466	rs5746744	C	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	19466757	rs11392459	A	AG	3210.73	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:152,137:0.47:289
chr22	19467717	rs4141527	C	T	9640.77	.	AC=1;AF=0.500;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	0/1:462,479:0.51:941
chr22	19470493	.	C	CT	426.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.818;QD=6.57;ReadPosRankSum=0.865;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:29,36:0.55:65
chr22	19471609	rs737858	A	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	19485134	rs12329947	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr22	19486600	rs9618586	C	T	8817.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr22	19704703	.	C	CGGGTG	5448.73	.	AC=1;AF=0.500;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	0/1:87,133:0.60:220
chr22	19704877	rs75075957	G	A	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:75,202:0.73:277
chr22	19706150	rs73377941	C	G	12817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.346;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:324,607:0.65:931
chr22	19712094	rs1059196	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-1.497;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr22	19747082	rs737868	G	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	19751829	rs2301558	C	T	30051.77	.	AC=2;AF=1.00;AN=2;DB;DP=1169;set=Intersection	GT:AD:AF:DP	1/1:0,1154:1.00:1154
chr22	19794366	rs737860	C	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	19799859	rs28417880	G	C	5963.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:302,309:0.51:611
chr22	19808791	rs35178436	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:129,87:0.40:216
chr22	19865869	rs113605285	T	C	18050.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr22	19867771	rs1139795	C	T	14087.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,545:1.00:546
chr22	19867914	rs13054713	C	A	10134.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr22	19868218	rs1139793	A	G	9580.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr22	19868255	rs34827823	AG	A	6165.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	19871097	rs13057374	C	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	19882492	rs35599379	CA	C,CAA	465.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=1.215;SOR=0.709;set=HC	GT:AD:AF:DP	1/2:11,31,20:0.50,0.32:62
chr22	19882630	rs5993856	G	A	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:179,190:0.51:369
chr22	19882888	rs5992494	G	A	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:181,176:0.49:357
chr22	19882984	rs5992495	T	G	4806.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:276,251:0.48:527
chr22	19885548	rs12169091	G	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:106,97:0.48:203
chr22	19886797	rs8142006	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr22	19898659	rs149796774	GC	G	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr22	19898837	rs885987	A	G	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	19898886	rs9606176	C	T	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:116,142:0.55:258
chr22	19902526	rs4597638	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr22	19902896	rs2073771	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr22	19905802	rs756661	G	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	19905892	rs113107030	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr22	19906306	rs3747067	C	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	19906511	rs11541479	G	A	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:126,99:0.44:225
chr22	19906693	rs146802029	AAC	A	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr22	19907099	rs5748469	C	A	4391.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:205,222:0.52:427
chr22	19907118	rs5748470	G	A	11679.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr22	19907192	rs5748471	A	G	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	19921003	rs5746847	T	C	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	19950235	rs4633	C	T	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:402,285:0.41:687
chr22	19950268	rs740602	G	A	7473.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:271,371:0.58:642
chr22	19950428	rs2239393	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr22	19951271	rs4680	G	A	14784.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:2,575:1.00:577
chr22	19954916	rs113895332	A	AT	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.022;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:274,61:0.18:335
chr22	19956262	rs362204	G	GC	1441.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr22	19958669	rs165849	G	A	7140.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:248,339:0.58:587
chr22	19959366	rs165824	G	A	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	19959473	rs165815	C	T	14365.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr22	19959955	rs2073744	A	G	6883.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:264,313:0.54:577
chr22	19960188	rs2518823	T	C	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	19960238	rs75475026	C	T	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:204,181:0.47:385
chr22	19960297	.	G	A	7461.77	.	AC=1;AF=0.500;AN=2;DP=772;set=Intersection	GT:AD:AF:DP	0/1:380,383:0.50:763
chr22	19960606	rs2240715	G	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:197,147:0.43:344
chr22	19964418	rs2240718	T	G	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr22	19969075	rs2073747	A	G	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=2.153;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:186,154:0.45:340
chr22	20020883	rs79885628	T	C	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:173,164:0.49:337
chr22	20050883	rs115183927	G	A	5960.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:325,296:0.48:621
chr22	20050979	rs73389746	G	A	8915.77	.	AC=1;AF=0.500;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	0/1:514,450:0.47:964
chr22	20079603	rs11089328	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-1.444;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:27,38:0.58:65
chr22	20096314	.	G	A	254	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=17;NR=3;PP=254;QD=14.4385606274;SC=GACCCTGGGCGCGCCTGCCTT;SbPval=0.74;Source=Platypus;TC=42;TCF=34;TCR=8;TR=20;WE=20096322;WS=20096304;set=Platypus	GT:AD:AF:DP	1/0:22,20:0.48:42
chr22	20096314	rs146291827	G	GCGCCTACCTTGCCAGACCCTGGGCA	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.926;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.97;ReadPosRankSum=-1.640;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr22	20100596	rs1633445	T	C	5777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.747;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:417,313:0.43:730
chr22	20102010	rs146636296	G	A	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:123,150:0.55:273
chr22	20102046	rs59276810	C	T	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:225,179:0.44:404
chr22	20102090	rs885980	T	C	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:270,219:0.45:489
chr22	20103462	rs59177373	G	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr22	20104268	rs114221480	C	G	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:148,159:0.52:307
chr22	20104301	rs395446	T	C	15976.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-1.452;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:1,609:1.00:610
chr22	20110246	.	C	CTG	175.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.45;QD=25.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20113777	rs175163	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.63;ReadPosRankSum=-1.150;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr22	20116906	rs175168	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:100,100:0.50:200
chr22	20117084	rs80098812	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr22	20127554	rs175174	A	G	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:186,163:0.47:349
chr22	20130626	rs150179091	C	T	14458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=1479;ExcessHet=3.0103;FS=7.053;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.436;QD=10.01;ReadPosRankSum=3.030;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:716,728:0.50:1444
chr22	20132972	rs175179	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr22	20136379	rs4819867	C	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:84,85:0.50:169
chr22	20136606	rs73877146	T	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr22	20136666	rs7291332	G	C	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:184,148:0.45:332
chr22	20137409	rs8142411	T	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;MQ=59.53;set=Intersection	GT:AD:AF:DP	0/1:108,77:0.42:185
chr22	20137822	rs3887519	C	G	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.734;QD=9.11;ReadPosRankSum=1.196;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:110,93:0.46:203
chr22	20137948	.	G	GTGGGGC	4401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.003;QD=19.31;ReadPosRankSum=-1.464;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:116,112:0.49:228
chr22	20138105	rs73391926	T	C	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:146,121:0.45:267
chr22	20255020	rs854929	T	C	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:3,260:0.99:263
chr22	20303555	rs9618782	C	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr22	20378890	.	T	TCTA	1265.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.46;QD=43.65;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	20379008	rs62218641	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.500;MQ=50.65;MQRankSum=-0.347;QD=7.14;ReadPosRankSum=-1.023;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr22	20379066	rs56006201	C	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-2.570;QD=9.71;ReadPosRankSum=0.298;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr22	20385706	rs79640249	G	T	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=49.28;MQRankSum=-9.324;QD=7.62;ReadPosRankSum=-3.608;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:105,81:0.44:186
chr22	20385739	rs146242498	TTGTC	T	5077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.722;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-11.158;QD=15.92;ReadPosRankSum=2.819;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:184,135:0.42:319
chr22	20721058	rs71312755	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=50.85;MQRankSum=-0.621;QD=1.11;ReadPosRankSum=0.633;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:164,31:0.16:195
chr22	20724622	rs79737013	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr22	20729825	rs2542135	A	G	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-1.142;QD=5.71;ReadPosRankSum=0.010;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:94,50:0.35:144
chr22	20729885	rs148868491	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.956;MLEAC=1;MLEAF=0.500;MQ=51.13;MQRankSum=-3.292;QD=2.20;ReadPosRankSum=-1.390;SOR=1.684;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr22	20739059	rs13056016	G	C	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:182,187:0.51:369
chr22	20749051	rs112010963	C	CT	1788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.790;QD=11.04;ReadPosRankSum=-0.327;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:37,125:0.77:162
chr22	20755098	rs1990249	A	G	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr22	20755132	rs55651125	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:108,104:0.49:212
chr22	20755226	rs4581986	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr22	20759534	rs5761555	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20779604	rs7286419	T	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	20779768	rs874101	G	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	20779822	rs874100	G	C	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-0.357;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:42,69:0.62:111
chr22	20779946	rs759612	C	G	1274.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=43.96;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	20779946	.	CG	GC	772	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=1;MGOF=99;MMLQ=22;MQ=59.86;NF=5;NR=11;PP=772;QD=51.5917421789;SC=TTGCCGCGCACGTCAGCGGCC;SbPval=0.7;Source=Platypus;TC=17;TCF=6;TCR=11;TR=16;WE=20779955;WS=20779936;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr22	20779947	rs759611	G	C	1274.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=43.96;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	20779973	rs5844418	C	CG	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=34.22;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	20780024	rs5844420	G	GC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	20780029	rs370015834	G	GC	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=44.71;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	20780031	rs2329378	G	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=42.83;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	20780091	rs759610	C	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	20780097	rs759609	G	C	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	20783485	rs5997411	C	A	12683.77	.	AC=1;AF=0.500;AN=2;DB;DP=1429;set=Intersection	GT:AD:AF:DP	0/1:758,660:0.47:1418
chr22	20791821	rs9619753	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr22	20795757	rs1153427	C	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	20800781	rs34110805	A	G	7072.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:450,381:0.46:831
chr22	20811930	rs362087	C	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr22	20843885	rs165613	T	G	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	20861902	rs116476024	T	A	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:115,126:0.52:241
chr22	20891366	rs5995779	T	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr22	20891545	rs4821915	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	20891568	rs2269831	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr22	20909544	rs73157002	G	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr22	20920813	rs71769813	ACAG	A	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.501;QD=1.55;ReadPosRankSum=-0.567;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:404,48:0.11:452
chr22	20929286	rs165842	C	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	20936820	rs111672536	T	C	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:52,88:0.63:140
chr22	21034788	rs9620389	C	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	21034809	rs28668558	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	21056997	.	G	C	382.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr22	21065645	rs444310	A	G	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.57;MQRankSum=-12.718;QD=6.22;ReadPosRankSum=-0.472;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:140,81:0.37:221
chr22	21081964	rs4820583	C	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	21082033	rs7289942	C	T	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:116,139:0.55:255
chr22	21147293	rs165793	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	21147606	rs182152082	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr22	21153278	rs16988826	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr22	21173844	rs145827220	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr22	21212966	.	G	GCCGCCT	1837.73	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr22	21213380	rs1061063	C	T	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,378:0.99:380
chr22	21311531	rs81027	C	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	21311721	rs178251	T	G	16027.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr22	21311915	rs57554052	C	T	6520.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:318,326:0.51:644
chr22	21322325	rs11334069	TC	T	16475.73	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=29.74;SOR=1.372;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr22	21322351	rs178254	T	C	12462.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr22	21322376	rs74610147	T	G	10395.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=44.24;SOR=1.936;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr22	21322377	rs75810376	C	G	10395.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.60;SOR=1.971;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	21322380	rs71317868	A	G	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.69;SOR=1.922;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	21322383	rs432390	A	G	9871.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=46.13;SOR=1.970;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr22	21322409	rs2097674	C	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:53,67:0.56:120
chr22	21327834	rs178265	C	G	7502.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	21327937	rs114219271	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr22	21328327	rs80133973	G	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr22	21329877	rs114940964	T	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr22	21331043	rs178269	A	T	8898.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr22	21331950	rs178276	C	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	21333505	rs8139975	A	C	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	21333605	rs61356271	G	C	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:96,116:0.55:212
chr22	21333857	rs8137514	G	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,63:0.41:155
chr22	21334461	rs8140475	T	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	21334879	rs8137006	A	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	21335126	rs59604728	CT	C	8947.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	21335135	rs61626201	C	A	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr22	21337415	rs178281	C	G	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	21340088	rs178287	T	C	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr22	21340375	rs8138014	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr22	21341677	rs58365624	C	CA	927.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.892;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:42,77:0.65:119
chr22	21342169	rs178289	G	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	21343982	rs138025454	TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC	T	2395.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:118,127:0.52:245
chr22	21343992	.	GGGCGCA	G	2318.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.80;MQRankSum=-0.757;QD=9.06;ReadPosRankSum=-3.230;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:138,118:0.46:256
chr22	21344001	.	TAGAGGAGGTGAGGGGCACGGGGAGCCAGGGC	T	2309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.77;MQRankSum=-0.588;QD=8.92;ReadPosRankSum=-3.905;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:141,118:0.46:259
chr22	21344905	rs178290	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr22	21344920	rs17820542	G	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr22	21346485	rs112544	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	21346719	rs756876	A	C	6971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=2.489;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:371,357:0.49:728
chr22	21348084	rs178291	T	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	21348914	rs4822790	C	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:163,158:0.49:321
chr22	21349037	rs178292	A	G	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr22	21350461	rs178294	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	21350880	rs178295	T	C	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:76,68:0.47:144
chr22	21354970	rs426938	C	G	4418.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:261,232:0.47:493
chr22	21355080	.	C	CG	4823.73	.	AC=1;AF=0.500;AN=2;DP=400;set=Intersection	GT:AD:AF:DP	0/1:191,189:0.50:380
chr22	21356029	rs2075269	T	C	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:137,194:0.59:331
chr22	21356538	rs368989	A	T	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	21356549	rs385427	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:55,39:0.41:94
chr22	21356566	rs369250	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	21356824	rs28372939	G	A	2484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-1.389;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:116,125:0.52:241
chr22	21356892	rs66918515	AAGAC	A	1735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.907;QD=20.66;ReadPosRankSum=0.613;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:39,45:0.54:84
chr22	21356925	rs9625292	T	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.779;QD=12.96;ReadPosRankSum=-0.335;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:22,33:0.60:55
chr22	21365668	rs1210564	A	G	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.58;QD=20.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	21365743	rs389623	GG	AT	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=44.60;MQRankSum=1.782;QD=9.65;ReadPosRankSum=-2.323;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr22	21372374	rs55763104	G	A	8912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=987;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.971;QD=9.10;ReadPosRankSum=2.831;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:520,459:0.47:979
chr22	21372405	rs2073598	G	T	20729.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr22	21372467	rs2073599	C	G	4094.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:129,187:0.59:316
chr22	21377301	rs1548411	C	A	21290.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr22	21377958	rs929671	A	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	21380064	rs1477145	G	A	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:263,253:0.49:516
chr22	21383312	rs2075279	G	A	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr22	21384578	rs2270384	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:97,60:0.38:157
chr22	21385427	rs80061703	G	C	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:282,298:0.51:580
chr22	21386019	rs2072550	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:161,162:0.50:323
chr22	21388605	rs2541956	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	21403375	rs28504593	CC	AT	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=4.631;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-0.511;QD=4.31;ReadPosRankSum=-0.777;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr22	21411598	rs46148	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	21797094	rs486362	C	G	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.46;QD=44.17;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	21797102	rs1210228	G	C	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.46;QD=44.17;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	21799932	rs141631466	T	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:155,169:0.52:324
chr22	21800042	rs467181	T	C	21639.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.081;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=1.284;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,840:1.00:841
chr22	21800444	rs128477	T	C	9908.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr22	21822001	rs183213118	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.47;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21822301	rs77868618	T	G	225.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.74;QD=22.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	21822372	rs66498338	CAGGATCCGGGGGT	C	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.83;QD=41.98;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	21822744	rs395295	G	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.60;QD=30.93;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	21822774	rs452545	T	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.42;QD=29.98;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	21829480	rs402694	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.44;QD=26.57;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	21829507	rs140118179	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.01;QD=48.68;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	21829513	rs113567369	TTGTC	T	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.17;QD=41.66;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	21830192	.	A	C	2978.77	.	AC=2;AF=1.00;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	21830934	.	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.57;MQRankSum=0.240;QD=14.75;ReadPosRankSum=-1.018;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr22	21832470	rs74875706	A	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.57;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21837221	rs183606830	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.89;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21838339	rs201760046	C	T	178.78	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.31;QD=22.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	21842655	rs143994138	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.90;QD=31.99;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	21846284	rs149272448	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.80;QD=18.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21846328	.	GC	G	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=42.69;MQRankSum=0.375;QD=9.68;ReadPosRankSum=1.512;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr22	21968716	rs3831682	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.044;QD=0.36;ReadPosRankSum=0.908;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:142,38:0.21:180
chr22	21988833	rs12170285	C	T	14970.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr22	21989154	rs28513567	C	T	5969.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:311,293:0.49:604
chr22	21989179	rs76090341	T	A	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:320,275:0.46:595
chr22	21989325	rs730882	C	T	7504.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:336,356:0.51:692
chr22	21991072	rs861852	T	C	13927.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr22	21998509	rs1947	T	C	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	22007143	rs395006	G	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.92;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	22007143	.	GGGACG	AGGACA,AGGACG	196	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=11,18;NR=2,5;PP=192,196;QD=18.8821442202;SC=GAAGACCCCAGGGACGCACCC;SbPval=0.79;Source=Platypus;TC=23;TCF=18;TCR=5;TR=13,23;WE=22007156;WS=22007133;set=Platypus	GT:AF:DP	0/1:0.57:23
chr22	22007148	rs75022554	G	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.403;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr22	22007370	rs372150	T	C	4470.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:252,236:0.48:488
chr22	22007528	rs861843	C	G	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr22	22024507	rs402225	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	22035664	rs35412833	C	T	4614.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:242,236:0.49:478
chr22	22036832	rs1669112	T	C	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr22	22036883	.	G	GCTGCCTCCTCAGTCTAGCTCTTACATCTCCTCCCCGATC	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=19.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=0.603;SOR=3.706;set=HC	GT:AD:AF:DP	0/1:32,35:0.52:67
chr22	22039992	rs150305358	C	CT	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr22	22041438	rs436496	C	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr22	22042440	rs861828	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:129,103:0.44:232
chr22	22048770	rs2070504	C	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr22	22051204	rs116407377	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr22	22055280	rs710172	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr22	22055394	rs1860	A	G	4360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=2.510;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:246,230:0.48:476
chr22	22055581	rs861816	C	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	22058098	rs76845365	G	A	6231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.628;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:236,312:0.57:548
chr22	22058511	.	A	G	2825.77	.	AC=1;AF=0.500;AN=2;DP=269;set=Intersection	GT:AD:AF:DP	0/1:126,139:0.52:265
chr22	22277675	rs240061	G	A	7130.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:328,357:0.52:685
chr22	22279834	rs240063	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr22	22288309	rs94194	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr22	22312315	rs71316717	C	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=52.97;MQRankSum=-6.762;QD=3.01;ReadPosRankSum=-2.776;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:365,114:0.24:479
chr22	22312350	rs2187583	GG	CC	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.684;JOINED;MLEAC=1;MLEAF=0.500;MQ=52.57;MQRankSum=-9.646;QD=4.19;ReadPosRankSum=-3.958;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:261,51:0.16:312
chr22	22312502	rs239920	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr22	22313829	rs239918	A	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr22	22316631	rs239915	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr22	22317337	rs239914	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr22	22325633	.	C	A	217.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr22	22330082	rs239927	T	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	22385924	rs61743733	G	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:103,82:0.44:185
chr22	22516990	rs115153265	G	T	6409.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:389,329:0.46:718
chr22	22517026	rs738885	T	C	16780.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr22	22517136	rs737840	C	G	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr22	22517162	rs737841	T	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr22	22556270	rs5995639	T	C	20836.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	1/1:1,803:1.00:804
chr22	22556368	rs9306341	C	T	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr22	22556662	rs2330029	A	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	22569448	rs5750741	T	A	26994.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.30;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,787:1.00:787
chr22	22569448	.	TTGT	ATGC,ATGT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=27;MQ=60.0;NF=81,213;NR=102,262;PP=2870,2962;QD=20;SC=AACAGCAACATTGTTGGCAAC;SbPval=0.57;Source=Platypus;TC=478;TCF=214;TCR=264;TR=183,475;WE=22569459;WS=22569438;set=Platypus	GT:AF:DP	0/1:0.38:478
chr22	22569451	rs76512804	T	C	6594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-1.084;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:437,330:0.43:767
chr22	22569554	rs6001413	C	A	7741.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:405,391:0.49:796
chr22	22569640	rs6001415	T	G	8578.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,322:1.00:323
chr22	22577869	rs201277699	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-1.691;QD=11.17;ReadPosRankSum=-0.152;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr22	22698027	rs1894246	A	G	9213.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr22	22712021	rs10674947	C	CCGGGGA,CCGGGGG	1116.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.72;QD=48.55;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,11,12:0.48,0.52:23
chr22	22712027	rs66722503	GA	G	197.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=10.142;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.621;QD=6.38;ReadPosRankSum=1.227;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr22	22712028	rs56355304	A	G	646.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.793;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=10.142;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.759;QD=20.86;ReadPosRankSum=-1.185;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr22	22712261	rs3753077	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr22	22712276	rs5757971	A	G	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr22	22712444	rs8142074	G	A	5946.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:370,300:0.45:670
chr22	22712467	rs5757973	T	G	15361.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr22	22712742	rs3753078	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr22	22723864	rs9611592	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr22	22723893	rs144478340	T	A	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr22	22724002	rs7286928	C	T	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:209,190:0.48:399
chr22	22724135	rs11324703	GT	G	3952.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr22	22724341	rs9607803	A	C	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:212,181:0.46:393
chr22	22724394	rs7292000	T	C	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr22	22730584	rs1985918	T	G	11631.77	.	AC=1;AF=0.500;AN=2;DB;DP=1099;set=Intersection	GT:AD:AF:DP	0/1:521,572:0.52:1093
chr22	22735732	rs10618613	CAA	C	3825.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:237,109:0.32:346
chr22	22735735	rs200574153	T	TG	3825.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:235,109:0.32:344
chr22	22735736	rs448848	A	G	10935.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr22	22735789	rs7284647	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:100,60:0.38:160
chr22	22758488	rs407401	A	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr22	22764402	rs148111939	C	T	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:342,253:0.43:595
chr22	22782394	rs165704	A	G	15222.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr22	22842206	rs11109	T	C	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr22	22842957	rs2236729	T	G	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr22	22843118	rs2236730	C	T	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr22	22868211	rs361558	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr22	22868493	rs361666	G	T	5256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=0.085;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:204,140:0.41:344
chr22	22868497	rs361762	G	C	5521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.720;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:205,155:0.43:360
chr22	22868773	rs361737	G	A	4407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-5.386;QD=18.84;ReadPosRankSum=1.419;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:117,117:0.50:234
chr22	22868776	rs362173	G	A	4380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=5.262;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-5.548;QD=18.64;ReadPosRankSum=1.957;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:121,114:0.49:235
chr22	22869123	rs362003	T	C	7058.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:456,378:0.45:834
chr22	22869209	rs362124	C	G	10106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-1.959;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:328,275:0.46:603
chr22	22869218	rs362132	T	C	9855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=17.05;ReadPosRankSum=-0.899;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:318,260:0.45:578
chr22	22869538	rs361611	A	G	3603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=-0.130;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:113,97:0.46:210
chr22	22869545	rs361580	T	G	3633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=1.257;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:119,94:0.44:213
chr22	22869548	rs362011	T	C	3550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=1.790;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:125,95:0.43:220
chr22	22869649	rs361721	G	C	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:158,127:0.45:285
chr22	22869742	rs361959	C	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:127,104:0.45:231
chr22	22891081	rs2072049	G	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	22893392	rs61730835	C	G	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:196,174:0.47:370
chr22	22895192	rs114312378	A	G	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr22	22895352	rs116509319	A	G	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:267,225:0.46:492
chr22	22899234	rs1129172	A	G	7404.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr22	22899363	rs8139318	GA	AG	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	22899414	rs2283800	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	22901979	rs113160976	CG	C	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	22901988	rs28364788	G	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	22930770	rs6002909	A	G	17023.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr22	22937566	rs143488870	C	CTTT	3369.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:66,92:0.58:158
chr22	22989183	rs60095922	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr22	22989237	rs60008056	G	A	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:128,140:0.52:268
chr22	22989256	rs2904923	A	G	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr22	23011376	rs11912406	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr22	23029263	rs443102	T	C	13291.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr22	23029359	.	G	A	13411.77	.	AC=2;AF=1.00;AN=2;DP=530;set=Intersection	GT:AD:AF:DP	1/1:2,512:1.00:514
chr22	23029374	rs451369	G	A	20051.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr22	23029698	rs443756	T	C	9745.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr22	23029718	rs199561156	A	T	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-10.124;QD=2.12;ReadPosRankSum=-4.009;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:336,85:0.20:421
chr22	23029846	rs200665672	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:94,40:0.30:134
chr22	23029871	.	C	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.720;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-3.980;QD=3.60;ReadPosRankSum=-0.093;SOR=1.784;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr22	23029876	.	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.500;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-3.914;QD=4.48;ReadPosRankSum=-0.513;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr22	23046741	rs5759380	AG	CA	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	23046915	rs5759381	C	T	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,216:0.98:220
chr22	23046940	rs5751527	T	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:4,185:0.98:189
chr22	23046954	rs5759382	T	C	6822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=0.000;QD=41.35;ReadPosRankSum=0.893;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:4,161:0.98:165
chr22	23046957	rs5751528	T	C	6735.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=0.000;QD=42.90;ReadPosRankSum=1.252;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:4,153:0.97:157
chr22	23047069	rs5751529	C	A	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	23047104	rs5751530	G	A	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr22	23047143	.	GCC	G	12563.73	.	AC=2;AF=1.00;AN=2;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.52;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr22	23047145	.	C	CTGATATA	2976	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=3;HapScore=1;MGOF=66;MMLQ=27;MQ=59.88;NF=28;NR=62;PP=2976;QD=20;SC=CAGGCCAGGCCCCTGAGTTGG;SbPval=0.5;Source=Platypus;TC=98;TCF=30;TCR=68;TR=90;WE=23047155;WS=23047135;set=Platypus	GT:AD:AF:DP	1/1:8,90:0.92:98
chr22	23047146	.	CCT	C	2950	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=3;HapScore=1;MGOF=66;MMLQ=24;MQ=59.98;NF=27;NR=62;PP=2950;QD=20;SC=AGGCCAGGCCCCTGAGTTGGT;SbPval=0.56;Source=Platypus;TC=93;TCF=29;TCR=64;TR=89;WE=23047155;WS=23047135;set=Platypus	GT:AD:AF:DP	1/1:4,89:0.96:93
chr22	23047148	rs77364963	T	TGATATAC	13124.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.71;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr22	23047217	rs73391218	A	G	10268.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr22	23047290	rs9623875	G	A	11294.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr22	23047298	rs9623876	C	T	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr22	23055001	rs114796085	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr22	23055329	.	CTTATTTAT	C	515	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=3;HapScore=2;MGOF=25;MMLQ=27;MQ=59.74;NF=0;NR=6;PP=515;QD=86.6666666667;SC=CAACCTCTCTCTTATTTATTT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6;WE=23055347;WS=23055319;set=Platypus	GT:AD:AF:DP	1/1:3,6:0.67:9
chr22	23055421	rs1985790	G	A	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	23055440	rs1008910	C	A	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	23055752	rs2304533	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	23055778	rs2304532	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	23063645	rs11090173	T	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	23077436	rs149656926	G	T	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr22	23077555	rs4822296	T	C	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	23077690	rs4822297	C	T	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	23089759	rs2040563	A	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	23089826	rs1978004	G	A	8290.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr22	23089857	rs2040564	G	A	13223.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=44.23;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	23089865	rs2040565	A	G	13021.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=44.44;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr22	23089941	rs3087123	ACT	A	10831.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	23090423	rs34605189	G	C	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	23090438	rs56223989	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	23090468	rs58198190	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.58;QD=39.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	23090475	rs58580735	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=44.90;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	23114748	rs71917069	CT	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.988;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr22	23165839	rs5844528	G	GC	3561.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	23247028	rs464478	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	23247082	rs2009433	C	T	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr22	23248758	rs1059142	G	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.35;QD=24.52;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	23248839	rs7117	A	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.28;QD=27.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	23256464	rs463185	G	C	8683.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr22	23260276	rs139283039	GGC	G	1743.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,65:0.96:68
chr22	23260507	rs410521	T	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	23262162	rs375081	C	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	23263602	rs373405	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	23263708	rs737885	T	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	23480962	rs5759598	T	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	23481133	rs10568631	GA	G	1853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.507;QD=10.47;ReadPosRankSum=1.846;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:37,140:0.79:177
chr22	23482460	rs4822360	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	23494833	rs5759603	T	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	23494904	rs2301555	T	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23500372	rs1004932	G	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	23504777	rs75984322	C	A	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,336:0.99:338
chr22	23504959	rs5759621	C	T	9870.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr22	23523082	.	G	GC	162	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=1;HapScore=2;MGOF=18;MMLQ=24;MQ=60.0;NF=4;NR=0;PP=162;QD=47.0;SC=GGCTGGCGAGGCGCCGCGCCG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=23523090;WS=23523072;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	23523630	rs5751602	C	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	23540414	rs2071431	T	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	23540510	rs74890117	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	23540609	rs4822371	A	G	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	23541532	rs79771021	C	T	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	23541549	rs78593182	G	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	23585132	rs1004040	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	23596756	rs11435513	G	GC	12723.73	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:4,425:0.99:429
chr22	23626081	rs8139664	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	23627369	rs140504	A	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	23627441	rs131675	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	23629552	rs5759681	T	C	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23631639	rs11090228	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	23631801	rs2227939	T	C	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr22	23631813	rs113087899	G	GC	6731.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr22	23631823	rs62219796	T	C	10075.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	23632513	rs16802	A	G	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	23632665	rs131677	C	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	23657477	rs180810	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	23657495	rs180811	C	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	23657735	rs180812	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	23735649	rs8135826	C	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr22	23802548	.	G	C	216.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr22	23802590	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=10.112;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-5.020;QD=1.86;ReadPosRankSum=1.175;SOR=2.567;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr22	23917176	rs115303391	G	A	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	23922281	rs116760479	C	T	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	23962744	rs72559613	T	TTTC	6895.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	23982724	rs56397271	T	C	14739.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=43.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr22	23982727	rs28645846	A	G	14666.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.25;QD=44.58;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr22	24034288	rs738786	A	G	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	24035970	rs2070446	C	T	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	24038847	rs1007298	T	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	24094912	rs4820566	T	C	6347.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.153;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.073;QD=25.19;ReadPosRankSum=-2.338;SOR=0.492;set=HC	GT:AD:AF:DP	1/1:3,249:0.99:252
chr22	24106674	rs140181	G	A	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr22	24107608	rs61160578	G	A	4027.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.120;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=-0.592;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,159:0.99:160
chr22	24107801	rs61117377	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	24107934	rs1054055	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	24108288	rs140182	C	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	24108412	rs80027270	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	24108438	rs111677724	G	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr22	24109550	rs131444	T	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	24109774	rs179468	T	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	24121284	rs28363644	G	A	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	24121378	rs738792	C	T	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	24125565	rs2877173	G	A	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	24129326	rs34276473	C	T	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr22	24135968	rs11413092	C	CT	315.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.534;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr22	24143206	rs35105793	A	G	11632.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,456:1.00:458
chr22	24143502	rs738797	C	G	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	24145395	rs5760030	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	24145675	rs5751738	G	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	24176959	rs35305666	CA	C	7108.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	24180065	rs141971031	G	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	24199260	.	TGG	T	3342.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.07;ReadPosRankSum=0.421;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:5,110:0.96:115
chr22	24199264	rs367780214	G	T	2319.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.382;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.20;ReadPosRankSum=1.699;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:9,91:0.91:100
chr22	24199704	rs16986337	C	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	24204158	rs2275979	A	G	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	24209759	rs2330626	G	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	24212248	rs60719441	A	G	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr22	24217449	rs12157360	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	24224508	rs6003938	C	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr22	24226242	rs2070460	A	G	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr22	24227246	rs6003939	A	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	24236819	rs2096525	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	24237221	rs2070766	C	G	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	24237463	rs2070767	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	24237862	rs2000466	T	G	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	24238079	rs34383331	T	A	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	24300580	rs76853009	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.65;QD=24.37;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	24325006	rs200925305	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.21;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	24325047	rs149686121	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.21;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	24340938	rs140290	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=43.84;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	24340938	.	AGA	GGG	1363	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=57.88;NF=11;NR=24;PP=1363;QD=40.4705107103;SC=CATGGGCTGTAGATAGACGAA;SbPval=0.6;Source=Platypus;TC=37;TCF=12;TCR=25;TR=35;WE=24340948;WS=24340928;set=Platypus	GT:AD:AF:DP	1/1:2,35:0.95:37
chr22	24340940	rs138275558	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=45.56;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	24452885	rs2070467	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	24459438	rs762273	T	C	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	24472270	rs2283807	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	24480503	rs4820581	G	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	24492061	rs2236622	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	24628161	rs73396312	G	A	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	24640438	rs146124452	TCACA	T	942.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	24640666	rs78246933	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	24644878	rs8138838	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	24717850	rs204710	A	G	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	24726517	rs79341451	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	24730319	rs147354563	G	GA	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	24730340	rs59111076	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	24730587	rs5760351	C	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	24761467	rs204718	G	A	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	24827522	rs7287959	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	24891292	rs2070474	C	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	24898310	rs2232866	C	T	9591.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr22	24944053	rs4822506	C	T	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	24951556	rs114059315	C	T	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	24953479	rs11427005	C	CT	167.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr22	24953571	rs5760472	A	G	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	24981880	rs116161010	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	24985736	rs56017319	GCC	G	939.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	24988920	rs737128	C	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	25003793	rs191748017	G	A	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	25003934	rs2076999	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	25010746	rs4049881	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	25010885	rs12166510	G	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	25010943	rs7284160	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	25010967	rs112952976	G	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	25024016	rs12167957	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=48.78;MQRankSum=3.592;QD=18.08;ReadPosRankSum=-1.067;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr22	25040792	.	C	T	39.74	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.21;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	25124095	rs738827	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	25129964	rs5760612	A	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	25130068	rs116399439	T	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	25145453	rs1892723	C	T	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	25145471	rs1892722	A	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	25151638	rs6004259	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	25151890	rs5760623	C	A	1057.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=20.34;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	25151891	rs5751973	A	C	1042.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=0.000;QD=19.67;ReadPosRankSum=1.571;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr22	25153810	rs149304338	GAA	G	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;QD=18.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:6,13:0.68:19
chr22	25158326	rs5751975	A	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	25158597	rs738822	G	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	25202560	rs6004288	A	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	25291076	rs5760712	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	25291095	rs5760713	C	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	25291182	rs143669914	TTTC	T	12180.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr22	25294155	rs6004350	A	C	10517.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:2,411:1.00:413
chr22	25297755	rs139738	G	A	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	25297965	rs139739	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	25334037	rs34070080	C	CTCAT	5032.80	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:7,121:0.95:128
chr22	25566921	rs12329967	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	25570332	rs16979690	G	A	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr22	25573628	rs145095694	T	TC	498.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	25597331	rs2269672	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	25624049	rs5760923	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	25625554	rs55700037	G	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	25713933	.	A	G	218	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=2;MGOF=23;MMLQ=27;MQ=40.81;NF=9;NR=1;PP=218;QD=25.2771212547;SC=AGTGAGGTGGACAGGTCCGAG;SbPval=0.64;Source=Platypus;TC=10;TCF=9;TCR=1;TR=10;WE=25713941;WS=25713923;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	25716068	rs133162	C	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	25753388	rs146621867	G	A	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr22	25853368	rs6423498	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr22	26159289	rs133885	G	A	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	26163996	rs133901	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	26164079	rs133902	C	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	26164105	rs41281569	A	G	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	26166011	rs133903	C	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	26166900	rs3859866	G	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	26168251	.	G	GGGCCAGAA	3212.73	.	AC=2;AF=1.00;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	26173484	rs12170856	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	26173661	rs5761170	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr22	26173888	rs9624897	G	C	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	26219412	rs5752226	T	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	26219723	rs143285237	C	CT	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	26222247	rs8143030	T	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26222454	rs9624909	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	26224632	rs3848861	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	26228757	rs35045598	TA	T	1160.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	26228797	rs3859879	A	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	26264508	rs116518719	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	26270190	rs67075414	A	ACC	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	26272270	rs695633	A	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr22	26273850	rs695428	G	C	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	26286851	rs149225136	TCAGGGGTGGC	T	3082.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	26298754	rs2072016	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	26298874	rs2072017	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	26317155	rs739284	A	G	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	26317160	rs739285	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	26341969	.	CCCTCCCCTCCCCTCCCA	C	43.52	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=21.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	26342056	rs4820662	C	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=26.21;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	26343805	rs2072007	A	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	26346484	.	A	ATG	249.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr22	26388337	rs916425	C	T	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	26422287	rs7285311	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	26422980	rs2236005	A	G	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	26423535	rs34875296	G	A	10484.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr22	26690407	rs137204	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	26702015	rs1210894	A	C	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	26743594	rs73404668	T	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	26769234	rs1076660	T	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	26769464	rs5844691	G	GA	74.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	26777795	rs482902	A	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	26853905	rs1894704	C	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	26853980	rs1894705	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	26854441	rs1894706	G	A	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	26854682	rs4822722	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	26859942	rs5752330	C	T	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	26861545	rs3213583	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	26862153	rs739289	C	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	26862212	rs713998	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	26864658	rs739290	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	26877539	rs739291	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	26879823	rs968425	C	A	112.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	26882142	rs5761561	G	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	26884039	rs4820682	G	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	26887099	rs4820683	T	A	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	26887829	rs1045523	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	26894985	rs2187956	C	T	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	26895061	rs2157586	G	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	26895337	rs1008530	G	A	10195.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr22	26899474	rs134136	T	C	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	26951317	rs28402932	A	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	27008020	rs57400078	G	T	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	27021425	rs4276	A	G	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	27021457	rs5761637	T	C	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	28146770	rs28501997	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	28293980	rs738451	G	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	28316591	rs75321888	T	TG	2022.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.71;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	28559521	rs12166350	G	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr22	28692331	.	G	GA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.725;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr22	29104940	rs71690205	CA	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.589;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr22	29120604	rs147668316	G	A	714.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;MQRankSum=-0.129;QD=22.34;ReadPosRankSum=-1.257;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr22	29120647	rs370893846	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-3.496;QD=4.63;ReadPosRankSum=-0.999;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr22	29130300	rs1033667	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	29137944	rs2236142	G	C	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	29147293	rs73881132	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	29168755	rs11556025	T	C	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	29169050	rs139091725	AGGGCGGGC	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	29179739	rs2347447	C	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	29196043	rs112927931	C	CT	785.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	29196526	rs2269575	G	A	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	29279991	rs1065497	C	T	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	29413785	rs4823005	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	29414001	rs2347790	A	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	29438327	rs12484832	A	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	29439201	rs9613785	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	29440692	rs713834	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	29446611	rs5997435	A	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	29446975	rs6005967	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	29469130	rs7292708	A	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	29490497	rs134657	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	29495079	rs134665	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	29562853	rs132316	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	29562893	rs132317	G	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	29621128	rs743920	C	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	29627536	rs112034362	C	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	29682881	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.530;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:71,15:0.17:86
chr22	29688751	rs131186	CTT	C	93.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.079;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr22	29692488	rs140065	G	T	311.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	29692497	rs131190	G	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	29707639	rs34777709	G	GC	4077.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	29707837	rs112200443	G	A	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr22	29709989	rs148691912	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	29711251	rs2519485	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	29724792	rs6006095	T	C	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	29725893	rs2071578	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	29727886	rs2857465	T	C	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,154:0.99:156
chr22	29734952	rs59074009	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr22	29736660	rs2228323	A	G	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	29736727	rs369205288	G	A	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	29737788	rs75220707	G	C	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr22	29745509	.	G	GT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.035;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr22	29747412	rs79760348	A	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	29747684	rs146107210	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	29755888	rs2072051	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	29759188	rs6006105	C	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	29815161	rs140773932	G	C	12808.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.06;QD=25.41;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr22	29833639	rs174718	C	G	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	29837888	rs144870869	G	A	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:29,257:0.90:286
chr22	29879265	rs144426244	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.181;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr22	29881884	rs4823040	G	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	29885567	rs147489453	A	AAAGTCCCCTGAGAAGGCC	16531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=2.966;MLEAC=2;MLEAF=1.000;MQ=63.43;MQRankSum=1.211;QD=45.79;ReadPosRankSum=1.132;SOR=0.158;set=HC	GT:AD:AF:DP	1/1:2,359:0.99:361
chr22	29885861	rs165923	T	C	14647.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr22	29886341	rs61744118	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	29886413	rs165625	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	29886893	rs1061373	G	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	29904519	rs2283859	T	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	29922042	rs71324775	CTACTAGG	C	343.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	29924481	rs144075172	AGAG	A	5615.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr22	29957321	rs6361	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	29957911	rs469295	T	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	29957944	rs468986	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	29960335	rs456300	A	G	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr22	29966083	rs456285	C	T	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	30077361	rs140086	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	30124968	rs9614042	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	30198025	rs4823054	C	T	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr22	30223746	.	GACAC	G	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.68;ReadPosRankSum=-0.637;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr22	30229399	rs3958025	C	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	30366924	rs34749290	C	CT	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.502;QD=15.03;ReadPosRankSum=-0.886;SOR=1.636;set=HC	GT:AD:AF:DP	0/1:10,48:0.83:58
chr22	30374621	rs997913	T	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	30384572	rs5763671	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	30405151	rs41157	T	C	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr22	30413877	rs5763701	T	C	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr22	30418161	rs41168	A	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	30507904	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.814;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:102,24:0.19:126
chr22	30515049	rs5753014	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	30681797	rs6147585	T	TCTGCCCCAGCCCTTGGTGCTCCCC	6492.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=55.02;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	30683105	rs116527400	G	A	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	30688339	rs77842957	G	A	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	30689892	rs141575157	C	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr22	30691631	rs2097919	G	A	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	30714684	rs740219	A	C	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr22	30738161	rs9608885	C	T	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	30738737	rs5753080	G	A	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	30742623	rs740221	T	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	30766466	rs12167903	C	T	15578.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr22	30770216	.	A	T	911.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	30770603	rs5749082	T	A	9028.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr22	30771554	rs2015035	T	G	18601.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr22	30774339	rs12171202	CA	TG	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	30783387	.	C	CGGGGCGGGGCGCCGGGA	183.94	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=36.79;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	30795484	rs5753124	G	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	30795502	rs60817387	CAA	C	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.79;ReadPosRankSum=0.219;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr22	30822920	rs5844906	T	TG	5059.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=34.66;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	30831621	rs114216438	T	G	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr22	30857373	rs2240345	A	C	7381.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr22	30857448	rs5749104	A	G	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr22	30862146	rs1047917	C	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	30862400	rs1057995	T	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	30863163	rs5997653	C	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	30863234	rs58327765	A	ACATCCATC	409.74	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	30864610	rs4820853	A	G	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr22	30864692	rs4820854	G	A	10442.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:4,410:0.99:414
chr22	30864792	rs2269962	C	T	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr22	30864817	rs2269963	A	G	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr22	30886388	rs73392179	C	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	30887952	rs145596609	A	G	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.42;QD=25.37;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	30888589	rs56037418	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	30901592	rs9608956	T	C	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	30921249	rs7289828	G	T	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	30921371	rs6518698	T	C	16666.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr22	30930080	rs5753187	T	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	30930158	rs2899151	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	30934816	rs5753190	T	C	9915.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr22	30934887	rs5753191	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	30973146	rs34323294	AG	A	4883.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr22	30981508	rs4820017	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	30987861	rs737953	G	C	17568.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,675:1.00:675
chr22	30987933	rs17526668	T	A	12963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.46;ReadPosRankSum=1.186;SOR=0.331;set=HC	GT:AD:AF:DP	1/1:1,489:1.00:490
chr22	30987960	rs16988803	C	T	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr22	31006860	rs9606756	A	G	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	31010313	rs75772248	C	T	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	31011882	rs4820021	A	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	31018777	rs2301956	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	31042490	rs16988927	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	31060029	rs1005887	G	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	31089958	rs11383654	G	GA	269.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.848;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr22	31090067	rs111265481	T	TCCACAACTA	5445.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	31091064	rs41279967	C	T	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	31091139	rs13053290	A	G	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	31091633	rs7288635	A	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	31266546	rs2301816	T	C	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr22	31266777	rs4820909	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	31285136	rs12166521	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	31285680	rs5749186	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	31301734	rs10625967	A	AGG	3506.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	31302125	rs3804084	C	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	31302233	rs3804085	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	31329056	rs2074578	G	C	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	31329954	rs5753398	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	31331439	rs12168605	T	A	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	31333631	rs3747151	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	31335724	rs1005252	T	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	31336149	rs739896	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	31342594	rs5753403	C	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	31354653	rs737924	G	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	31481306	.	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	31487733	rs116593437	G	A	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr22	31491295	rs3205187	G	C	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	31493460	rs5753458	T	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	31494568	rs33991833	A	AC	2028.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	31497054	rs5753459	A	C	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	31501833	rs2283875	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	31522006	rs372167198	C	A	9285.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr22	31531788	rs116007140	A	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	31532568	rs757872	G	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	31535995	rs2074734	C	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	31536133	rs2232176	A	C	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr22	31556103	rs5997893	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31583007	rs5997902	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	31600460	rs2413035	T	C	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	31602139	rs3208937	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	31602187	rs13158	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	31621792	rs5997917	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr22	31644614	rs11556237	C	T	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	31658281	rs2073857	A	G	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	31663842	rs2228619	C	G	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	31669267	rs2040532	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	31672676	rs59315359	G	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	31672752	rs5997933	A	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	31679110	rs2040533	G	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	31679286	rs138919303	AAAAC	A	9879.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	31685129	rs11089495	C	T	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	31685458	rs5753543	G	A	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	31687142	rs5753544	G	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=2.194;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	31687313	rs4820044	A	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	31687455	rs10558009	ACCC	A	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	31724972	rs131207	CA	C	1903.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	31795866	rs4820047	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	31854434	rs11293411	AT	A	3079.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	31864180	rs139364846	G	T	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	31904170	rs2413054	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31926743	rs5998031	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	31957077	rs5998045	A	G	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	31971071	rs72192074	CGTGTGTGTGTGTGTGT	C	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr22	31971172	rs10657905	A	ATCT	3416.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	31971258	rs5753700	T	C	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	31976451	rs11347644	AC	A	1442.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	31981202	rs374906915	C	T	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	31983287	rs112798271	A	ATTTGTTTTGT	5326.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.76;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	31985385	.	T	TA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=3.179;QD=1.73;ReadPosRankSum=-0.438;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr22	32002294	rs5753723	T	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	32011225	rs12171042	T	C	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:4,219:0.98:223
chr22	32012634	rs738684	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	32014250	rs56219558	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	32015406	rs14034	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	32015450	rs9956	T	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	32081436	.	CAAA	C	2106.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=0.325;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:6,70:0.92:76
chr22	32099783	rs11430844	A	AT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.084;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr22	32100610	rs373387815	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	32110163	rs140078	G	A	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	32112461	rs140081	T	C	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	32179850	rs138286	G	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	32188244	rs12157771	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	32211371	rs10712869	CT	C	505.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.516;QD=17.44;ReadPosRankSum=1.305;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr22	32211412	rs5749334	A	C	513.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.203;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.34;ReadPosRankSum=-0.228;SOR=0.499;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr22	32230185	rs9621346	G	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	32242953	rs200277794	A	G	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	32243020	rs3216829	TC	T	2358.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	32266546	rs5994441	A	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	32275353	rs5994443	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	32330272	rs61736319	G	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	32334021	rs1984388	T	A	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	32334229	rs3788443	A	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr22	32334295	rs3788444	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	32340565	rs71697452	TGCCTGCA	T	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	32340837	rs71845980	CG	C	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	32340880	rs138873821	C	CG	315.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	32341669	rs2301415	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	32341684	rs7290696	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	32343613	rs10631788	G	GCTCT	1782.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	32346468	rs4820059	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	32352791	rs1049583	G	A	10155.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr22	32463083	rs5994463	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	32478972	rs131880	A	AG	5106.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	32482127	.	CA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.477;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr22	32482321	rs5998233	T	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	32495092	.	AATATAT	A	471.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	32545628	rs142171049	C	CA	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr22	32545849	rs58570639	C	CA	2766.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	32546946	rs2019949	C	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	32547012	rs3888536	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.22;QD=24.61;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	32547086	rs2019952	C	T	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.37;QD=23.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	32547626	rs5998254	T	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	32547861	rs11272724	TTGGGAAAGACAGAGGAG	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	32548036	rs200925446	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.077;QD=0.70;ReadPosRankSum=-1.106;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr22	32554985	rs5998267	A	G	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	32554996	rs12160688	C	T	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	32579550	rs136428	T	C	9144.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=44.18;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	32579559	rs136429	A	G	9020.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=44.88;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	32579676	rs136430	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	32579751	rs136431	C	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	32579799	.	G	T	116.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	32586632	rs136466	C	T	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	32586854	rs136467	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	32586875	rs136468	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.43;QD=42.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	32586878	rs136469	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=46.20;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	32586926	rs136470	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.51;QD=30.79;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	32587023	rs55974778	C	G	11679.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.61;QD=45.45;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	32587027	rs136472	G	C	11802.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.76;QD=44.04;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr22	32587086	rs5998288	C	T	11551.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr22	32587478	rs136473	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	32589034	rs136479	T	C	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr22	32590449	rs108211	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	32616870	rs73164039	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	32617062	rs5998317	G	A	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	32617121	rs73164040	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr22	32621619	rs2294208	C	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr22	32625210	rs5998322	C	T	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	32626908	rs2068209	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	32630812	.	CACAG	C	136	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=60;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=136;QD=72.5;SC=CATACAGACACACAGACAGAC;SbPval=0.74;Source=Platypus;TC=12;TCF=6;TCR=6;TR=2;WE=32630823;WS=32630802;set=Platypus	GT:AD:AF:DP	1/0:10,2:0.17:12
chr22	32633505	rs5998328	G	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	32634877	rs5998331	G	A	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	32649994	rs2235170	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	32756652	rs201161881	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-10.952;QD=0.79;ReadPosRankSum=-0.090;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:157,29:0.16:186
chr22	32756684	rs61729165	C	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-12.360;QD=2.96;ReadPosRankSum=0.108;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:141,47:0.25:188
chr22	32756703	rs73166367	C	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.921;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-12.770;QD=3.62;ReadPosRankSum=2.121;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:149,56:0.27:205
chr22	32791929	rs3215463	GC	G	909.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	32804313	rs5754073	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	32804656	rs2076043	G	A	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	32804665	rs2076044	T	C	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	32813176	rs5844996	CT	C	157.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=10.569;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-0.284;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr22	32831537	rs111330819	C	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	32831540	rs2076050	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	32831768	rs113455565	C	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr22	32833729	rs113666931	T	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	32875190	rs11107	G	A	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	32886998	rs738982	T	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	32887150	rs9726	C	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	32914233	rs5998527	C	T	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	32937720	rs141940631	G	GA	9983.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	32937828	rs5998533	C	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	33229804	rs11703156	G	A	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	33253280	rs9862	T	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	33327624	rs1365835	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	33562683	rs743794	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	33562887	rs9609729	G	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	33828068	rs16992336	A	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	33832735	rs713740	A	G	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	34000230	rs695504	T	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	34426305	rs147846265	GCCCTT	G	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=42.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	35463162	rs361863	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	35463179	rs361668	T	C	2753.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.477;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.502;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=1.246;SOR=0.608;set=HC	GT:AD:AF:DP	1/1:1,111:0.99:112
chr22	35478486	rs2899241	A	C	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr22	35478688	rs725267	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr22	35481776	rs3810619	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	35684533	rs5750093	G	C	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	35723245	rs115540450	G	A	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	35727265	.	CT	C	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.471;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr22	35741863	rs133399	A	G	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	35777185	rs2071747	G	C	7167.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr22	35786003	rs143430077	GGACTTGGCTGTCT	G	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	35789379	rs142486293	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	35802661	rs2307340	C	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	35806616	rs4645776	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr22	35810052	rs80433	T	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	35812504	rs71986110	CTGTGTGTGTGTGTGTGTGTGTGTG	C,CTG	2854.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.120;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.225;QD=35.68;SOR=0.343;set=HC	GT:AD:AF:DP	1/2:1,31,48:0.39,0.60:80
chr22	35820254	rs4645824	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	35947740	rs142138208	C	T	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,332:0.99:334
chr22	36006923	rs35171458	G	GC	1756.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	36052321	rs5995134	G	A	224.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	36055130	rs5999923	T	A	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	36114047	rs4821438	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	36114054	rs2899256	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	36116494	.	C	CTAACTT	2085.73	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.23;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	36116535	rs33921037	A	G	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	36122930	rs2076671	C	T	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr22	36218874	rs57822436	CT	C	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.719;QD=9.00;ReadPosRankSum=1.569;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr22	36335309	rs5756005	G	A	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr22	36424247	rs75503894	C	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	36424450	rs9607299	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	36545016	rs9610412	C	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	36545137	rs132642	A	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	36556823	rs132653	G	T	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr22	36557004	rs6147610	TCTTGGCCAACCCAC	T	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	36587202	rs6000172	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	36587223	rs6000173	G	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	36587279	rs6000174	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	36587486	rs2227167	A	G	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr22	36587511	rs2227168	C	T	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr22	36587845	rs3075364	A	ACT	16785.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr22	36587952	rs2227169	C	T	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	36591380	rs2007468	A	G	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	36593803	rs114171244	G	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	36597640	rs114587863	C	A	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	36623731	rs132760	T	C	12564.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr22	36627380	rs28440984	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	36629123	rs5995265	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	36633065	rs5995266	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	36633107	rs5995267	C	A	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	36633564	rs916263	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	36633744	rs114913627	G	A	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr22	36633836	rs916264	A	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	36634804	rs115813747	C	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	36635444	rs136144	A	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	36635490	rs145265152	GGGATCTTCCTCT	G	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	36649966	rs6000220	C	T	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	36651231	rs28360494	T	G	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	36655663	rs12106505	A	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	36657596	rs713929	A	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=25.27;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	36657628	rs136163	T	G	8094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.488;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.084;QD=24.98;ReadPosRankSum=-0.585;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,323:1.00:324
chr22	36661149	rs136169	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	36661152	rs28480494	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	36661536	rs136174	C	A	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr22	36661566	rs136175	G	A	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr22	36661646	rs136176	G	A	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=27.36;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	36661842	rs136177	G	A	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	36662041	rs143830837	AATAATT	A	4784.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	36678833	rs141686520	TG	T	1868.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=31.67;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	36684567	rs6000226	C	T	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	36687962	rs6000233	T	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	36690113	rs4821478	G	A	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	36691607	rs710181	A	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	36696087	rs6000235	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	36712472	rs5756152	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	36722490	rs8136069	C	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	36722534	rs8136336	G	A	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	36744886	.	GCC	G,GC	646.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=76;set=Intersection	GT:AF:DP	0/1:0.72:29
chr22	36872750	rs2281082	T	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr22	36891786	rs5756218	G	C	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	36900271	rs2277841	T	C	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr22	36900806	rs760718	A	G	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	36907098	rs728785	T	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr22	36962353	rs2267338	C	G	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	36983404	rs2235681	C	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	36983428	rs2235682	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	37098697	rs200491685	C	CA	405.75	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr22	37159819	rs739002	T	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	37163329	rs1048012	C	T	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr22	37171611	rs2009667	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	37196871	rs3484	G	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	37196971	rs2001063	C	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	37267767	rs2072708	A	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	37268501	rs2072710	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	37268555	rs2072711	A	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	37271802	rs2072712	C	T	17191.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr22	37271882	rs2075939	T	C	16349.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr22	37273742	rs11552115	G	A	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr22	37325887	rs200102736	G	A	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr22	37400144	rs41280011	A	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	37447855	rs113687833	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	37448694	rs112058074	C	T	10033.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr22	37449335	rs112009022	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	37462936	rs855791	A	G	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	37464624	rs877908	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	37469386	rs111916270	AGATGGATG	AGATG,A	1234.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:29
chr22	37469591	rs4820268	G	A	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr22	37470604	rs2072860	G	A	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	37471040	.	TACAC	T	1320.73	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	37479043	rs57546533	C	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	37480269	rs2543519	A	G	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	37481002	rs113040183	T	C	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr22	37481041	rs2179229	G	C	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	37482289	rs113287112	C	T	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr22	37485595	rs2235326	T	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	37491545	rs2743824	T	C	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	37491839	rs2543509	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	37492201	rs2743825	T	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	37499692	rs5756515	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.59;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	37499699	rs5756516	C	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.31;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37528362	rs2072861	T	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr22	37528576	rs3218318	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37528606	rs2072862	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	37539960	.	C	T	76	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=44;MMLQ=24;MQ=60.0;NF=1;NR=3;PP=76;QD=27.6928031368;SC=TGTGTGTGTGCGCGCATTCAT;SbPval=0.24;Source=Platypus;TC=16;TCF=9;TCR=7;TR=4;WE=37539968;WS=37539958;set=Platypus	GT:AD:AF:DP	1/1:12,4:0.25:16
chr22	37578579	rs229519	C	T	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr22	37578652	rs17812699	G	A	11923.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr22	37578852	rs229521	C	T	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	37578960	rs229522	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	37602583	rs11406761	G	GC	8915.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr22	37603745	rs4988466	G	A	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr22	37637841	rs2239775	C	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	37678551	rs3213556	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	37678565	rs3213557	G	A	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr22	37678814	rs5995410	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	37678837	rs5995411	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	37691907	rs2269590	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	37695256	rs2301435	T	C	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.06;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr22	37699377	rs2239822	T	C	16385.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr22	37700177	rs2284050	T	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	37707962	rs2269591	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	37708004	rs2269593	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37770630	rs2071856	G	A	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr22	37888868	rs5756696	G	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	37902177	rs738304	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	37904957	rs932326	C	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	37964299	rs2281098	C	G	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr22	37964408	rs200195385	CCAGCGCCTGCTGCAAACCCCT	C	10031.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.28;QD=40.45;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr22	38037105	rs11436470	T	TC	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.455;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:62,27:0.30:89
chr22	38051493	rs117382629	G	T	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr22	38086574	rs9610834	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	38119213	rs12628603	G	A	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr22	38119754	rs67890459	TCAA	T	31084.73	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,700:1.00:700
chr22	38121152	rs9610841	C	A	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr22	38122122	rs5756795	T	C	15555.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr22	38122448	rs739137	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	38122462	rs739138	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	38129332	rs7284476	G	A	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	38130385	rs13054052	A	C	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr22	38130472	rs8140958	T	C	11086.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	38142468	rs5756803	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	38146585	rs4821704	C	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	38146847	rs6519081	T	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	38155317	rs5756810	C	G	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	38161835	rs3833924	T	TG	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	38168508	rs762984	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	38204089	rs710187	C	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	38211954	rs2285179	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	38212068	rs739269	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	38212762	rs13911	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	38220964	rs8138029	T	C	1313.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.085;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.89;ReadPosRankSum=-0.980;SOR=0.468;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr22	38243675	rs5750504	A	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	38251686	rs2157472	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	38254768	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.141;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr22	38259110	rs61195610	CT	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.937;QD=6.42;ReadPosRankSum=-1.175;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr22	38282897	rs17752670	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	38308048	.	ATG	A	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.009;QD=3.14;ReadPosRankSum=-1.014;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr22	38341134	rs139859	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	38369976	rs139884	A	G	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	38453679	rs5845366	A	AG	559.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	38455469	rs713729	T	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	38463535	rs880669	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	38463652	rs2076369	T	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	38463968	rs2076370	A	G	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr22	38467784	rs760975	G	C	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	38474696	rs2076371	A	G	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	38474852	rs1004764	G	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	38477275	rs75640043	G	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	38477342	rs4289289	T	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	38477930	rs2235573	G	A	12972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.796;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=0.124;SOR=0.281;set=HC	GT:AD:AF:DP	1/1:1,507:1.00:508
chr22	38506509	rs4820313	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	38541791	.	A	AAC	138.79	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	38609950	rs2235264	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	38611080	rs9610915	C	G	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	38689984	rs5757022	T	A	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	38694270	.	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	38699050	rs3830720	GAGGC	G	11433.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr22	38823136	rs196059	T	C	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	38823838	rs79928737	C	T	8506.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr22	38875549	rs401933	C	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	38877461	rs12004	T	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	38889657	rs2267390	C	T	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	38891984	rs138444	T	TA	128.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.397;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr22	38895521	rs3833951	AAAG	A	5737.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	38917543	.	TAC	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=0.344;QD=7.77;ReadPosRankSum=-0.000;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr22	38963419	rs143670580	G	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	38982321	rs5750627	T	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	38993370	rs5757162	C	T	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	39003495	rs5757169	G	A	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	39016182	rs4821797	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	39024961	rs5995602	G	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	39034867	rs5757193	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	39045884	rs143131237	AGAAAG	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=40.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	39064209	rs2072795	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	39064230	rs2072796	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	39066820	rs3761454	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	39069181	rs3747174	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	39079148	.	G	GGGGC	96	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=9;HapScore=2;MGOF=14;MMLQ=21;MQ=64.64;NF=0;NR=3;PP=96;QD=36.0;SC=GCCGGGGGTCGGGGGGGGGGT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=39079156;WS=39079138;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	39079151	rs59060602	G	GC	301.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=37.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	39079920	rs368066955	AT	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.061;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr22	39079964	rs5750668	T	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	39126508	rs909564	A	G	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr22	39134715	rs1062687	T	C	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,132:0.99:133
chr22	39141600	rs138712	G	A	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	39148483	rs2072798	G	A	1393.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.377;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr22	39150543	rs2072794	G	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	39151057	rs470107	CG	C	1874.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	39239172	rs3747176	C	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	39239687	rs180925984	C	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	39267312	rs1122771	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	39382079	rs5995649	C	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	39419112	rs71326743	CTATT	C	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=44.14;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	39440149	rs5750728	C	T	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr22	39440199	rs76919915	G	T	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr22	39441096	rs2020390	G	T	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	39441203	rs4821862	C	T	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	39445380	rs2014881	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	39445554	rs2076101	G	A	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	39448711	rs6001402	C	A	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	39448750	rs5757451	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	39482241	.	C	CA	902.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.831;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,58:0.78:74
chr22	39497509	rs139300	A	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	39498373	rs139304	TA	T	1017.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	39626375	rs4821874	A	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	39636928	rs5757575	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=32.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	39636930	rs5757576	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=42.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	39636944	rs138673005	ACACT	A	378.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.40;QD=31.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	39639853	rs1800817	G	T	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr22	39709009	rs2014842	G	A	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr22	39711351	rs2076125	A	G	10233.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr22	39712981	rs137623	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	39713105	rs470081	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	39713128	rs2072872	A	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	39714704	rs1569498	C	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	39714908	rs137625	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	39746168	rs3747177	C	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	39770597	rs4821888	A	G	7167.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:3,271:0.99:274
chr22	39770780	rs4820377	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	39777822	rs149306472	C	CCAA	25434.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.120;QD=44.62;ReadPosRankSum=-0.553;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:2,568:1.00:570
chr22	39795683	rs4821892	G	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	39812986	rs6001585	C	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	39883344	rs4821902	T	C	10423.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,392:1.00:393
chr22	39883736	rs9623008	G	C	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	39913420	rs710192	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	39913557	rs10854722	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	39994105	rs760546	A	G	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	40042547	rs56032562	C	T	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	40043812	rs5757759	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	40054428	rs136848	T	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	40054948	rs5757761	T	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	40055304	rs136850	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	40055896	rs136851	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	40057273	rs136852	T	C	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr22	40058186	rs136853	A	G	8753.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr22	40058726	rs59106927	A	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	40058999	rs136854	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	40061683	rs136855	A	G	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	40075400	rs2294369	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	40075473	rs7288746	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	40161181	.	TTG	T	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.099;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr22	40364394	rs138009	C	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	40415140	rs2071771	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	40417571	rs35823589	G	A	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	40417780	rs5995793	C	T	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr22	40417820	rs5995794	A	G	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	40545595	rs6001804	A	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	40545797	rs34190441	T	TA	92.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	40545998	rs35899845	C	CA	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	40546041	rs35629137	C	CA	1231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.24;ReadPosRankSum=-1.637;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr22	40546153	rs5995826	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	40574170	rs6001827	T	A	3137.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	40697176	rs10617561	TGCA	T	4474.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr22	40756314	rs8192460	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	40803186	rs2018393	G	T	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	40814500	rs878756	T	C	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	40814636	rs4821944	C	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	40816749	rs2072856	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	41172351	rs6002128	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	41194909	rs138306	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	41194947	rs113368977	CA	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.128;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:96,35:0.27:131
chr22	41195142	.	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.493;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr22	41195191	rs113851841	A	AGTGGCATGGTT	909.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	41210063	rs138323	T	A	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	41227086	rs138335	C	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	41256660	.	C	CT	181.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr22	41256802	rs103197	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=25.17;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	41284424	.	T	G	619.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	41347474	.	G	A	4114.77	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	41537234	rs6002267	G	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	41545024	rs71761046	G	GT	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=7.941;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.509;QD=2.43;ReadPosRankSum=2.143;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:91,36:0.28:127
chr22	41604353	rs139431	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	41604557	rs139432	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	41605635	rs139437	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	41605639	rs139438	C	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	41606030	rs139439	A	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	41609859	rs139450	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	41610024	rs139451	G	A	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	41612965	rs85220	T	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	41616663	rs34923440	GA	G	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.029;QD=3.96;ReadPosRankSum=-0.330;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr22	41617160	rs139471	T	TG	1056.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	41617318	rs139472	G	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	41635425	rs139495	C	T	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	41645500	rs139500	TG	T	7324.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	41645757	rs71948	C	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	41652345	rs470112	C	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	41652733	rs139509	G	A	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	41660964	rs139520	A	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	41676559	rs35821769	C	CAGCT	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	41723113	rs62238180	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	41829794	rs6609	C	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.15;QD=26.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	41833116	rs202641	C	T	19176.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr22	41864216	rs505533	A	C	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	41911525	rs1799932	C	T	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.00;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	41925767	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.871;QD=1.03;ReadPosRankSum=0.103;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr22	42000254	rs10566783	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.25;ReadPosRankSum=-0.623;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr22	42016699	rs2267437	C	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	42076381	rs5758405	C	A	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	42084965	.	G	A	964.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	42089623	rs739134	T	C	12083.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr22	42109917	rs5758431	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	42111896	rs9306355	A	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	42139054	rs5751147	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	42139078	rs5751148	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	42140792	rs56663311	G	A	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	42140793	rs62236786	C	T	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	42140798	rs56138604	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.23;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	42140800	rs58323591	C	CTTTG	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	42148467	rs715498	G	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	42150146	rs1534932	C	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr22	42159229	rs2050033	G	T	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.46;SOR=2.138;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	42189810	rs199838109	A	AT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.899;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr22	42301712	rs2157590	T	C	10310.73	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr22	42306369	rs146103768	CGTGCGCCCAG	C	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	42334953	rs1047997	C	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	42336237	rs73165147	A	G	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	42339516	rs3752591	A	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	42341308	rs7293091	A	G	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:3,196:0.98:199
chr22	42341451	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.105;QD=2.55;ReadPosRankSum=0.186;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr22	42343091	rs6002555	G	A	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	42354389	rs62240996	A	C	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr22	42354487	rs149263017	G	GGAGA,GGAGAGA	597.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;QD=49.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,6,6:0.50,0.50:12
chr22	42388826	rs56234624	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	42388841	rs133299	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	42390209	rs7290907	G	A	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	42390225	rs7290655	C	G	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	42390887	rs372946947	CTG	C	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.121;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr22	42392811	rs1062753	G	A	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	42415224	rs11389397	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.767;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr22	42418185	rs133341	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	42474138	rs1807494	C	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	42475703	rs2269524	T	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	42486723	rs1801311	G	A	17475.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.636;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=0.388;SOR=0.233;set=HC	GT:AD:AF:DP	1/1:1,656:1.00:657
chr22	42523805	rs28371725	C	T	7935.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	42537023	rs2860372	T	C	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	42537404	rs2854741	G	C	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	42538508	rs3021082	A	G	5645.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.95;QD=44.45;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	42538508	.	AG	GA	2274	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=48.98;NF=33;NR=33;PP=2274;QD=35.2646647706;SC=CTCCTCCTTCAGTCCCTCCTG;SbPval=0.48;Source=Platypus;TC=75;TCF=39;TCR=36;TR=66;WE=42538522;WS=42538498;set=Platypus	GT:AD:AF:DP	1/1:9,66:0.88:75
chr22	42538509	rs56023519	G	A	5645.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=45.17;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	42538514	.	T	TC	5452.73	.	AC=2;AF=1.00;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	42538876	rs3020732	A	T	9017.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr22	42539623	rs769261	C	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.80;QD=28.23;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42540551	rs2743461	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	42783070	rs34963472	G	A	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr22	42793845	rs35151068	C	T	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr22	42793873	rs5996153	A	G	7796.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr22	42794001	rs17003026	T	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	42807314	rs2247576	T	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	42807351	rs2072863	C	T	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	42896553	rs71311440	TGGGGC	T	3682.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	42905177	rs1056566	T	C	16364.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr22	42908903	rs62239687	C	A	3323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=2.569;QD=8.70;ReadPosRankSum=1.104;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:203,179:0.47:382
chr22	42910376	rs9611811	G	A	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	42910668	rs199803033	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.334;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=28.306;MLEAC=1;MLEAF=0.500;MQ=52.36;MQRankSum=-7.968;QD=0.87;ReadPosRankSum=-0.052;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:252,46:0.15:298
chr22	42910685	rs142905414	T	TA	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.444;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=14.844;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=-7.637;QD=1.28;ReadPosRankSum=4.574;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:340,46:0.12:386
chr22	42911257	rs1137212	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.64;QD=26.75;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	42912029	rs3201001	G	T	15948.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr22	42912136	rs8139383	G	T	9221.77	.	AC=1;AF=0.500;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	0/1:470,468:0.50:938
chr22	42912501	rs5751292	A	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	42967235	rs137046	C	T	9069.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr22	42969854	rs137053	T	G	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	42969877	rs137054	G	A	9067.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	42970736	rs137059	G	A	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=43.90;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	42970745	rs137060	G	C	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.91;QD=44.37;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	42971987	rs137064	T	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	42972228	rs137065	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	42972485	rs137068	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.86;QD=27.27;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	42972498	rs137069	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.48;QD=28.03;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	42972515	rs137070	T	TA	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.18;QD=35.77;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	42972590	rs137071	A	G	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.46;QD=25.13;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	42973201	rs137073	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:10,69:0.87:79
chr22	42973206	.	C	T	603	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=47.5;NF=1;NR=13;PP=603;QD=45.5550866105;SC=CCAGGGGAGACGGTGCTAGGC;SbPval=0.97;Source=Platypus;TC=58;TCF=14;TCR=44;TR=14;WE=42973214;WS=42973191;set=Platypus	GT:AD:AF:DP	0/1:44,14:0.24:58
chr22	42976828	rs137077	C	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.78;QD=29.25;SOR=2.917;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	42981138	rs137085	T	C	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	42981167	rs137086	G	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	42981349	rs137087	C	T	9691.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr22	42981890	rs137088	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	42987826	rs137097	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	42988117	rs137098	T	C	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	42993786	rs11459339	C	CT	1065.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-0.175;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:43,90:0.68:133
chr22	43010817	rs28627172	G	A	25834.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,1011:1.00:1011
chr22	43015716	rs137124	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	43024410	rs137139	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	43026792	rs5758820	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	43027356	rs743889	G	A	18599.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:3,719:1.00:722
chr22	43035849	rs59947151	CTT	C	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;QD=25.71;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:5,38:0.88:43
chr22	43089055	rs6002904	G	C	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr22	43195147	rs1128013	A	G	9721.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,374:0.99:376
chr22	43203137	rs738535	C	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	43206950	rs1018448	A	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	43213631	rs147339109	C	CA	1036.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.810;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=0.338;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:6,51:0.89:57
chr22	43218463	rs5758957	C	T	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr22	43223095	rs10654612	C	CAT	1161.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	43230140	rs2273142	C	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	43253986	rs3046483	C	CTT	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	43267336	rs3842298	T	TC	3127.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	43272085	rs5751396	G	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	43272792	rs5751397	C	T	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr22	43272830	rs35041824	C	CAG	6310.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:5,171:0.97:176
chr22	43275250	rs2073199	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	43278162	rs4822217	T	C	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	43278220	rs2899365	C	T	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:3,201:0.99:204
chr22	43280650	rs2273143	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	43286876	rs5759012	A	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	43289473	rs5759013	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	43414728	rs118178599	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	43435668	rs2072883	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	43455592	rs17415203	G	A	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	43455665	rs5759126	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	43471386	rs2294413	G	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	43520258	rs4988417	A	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	43520263	rs2076079	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	43523921	rs4988434	A	ACT	1298.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.87;QD=41.89;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	43524487	rs4988438	CCT	C	1138.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	43529029	rs7402	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	43529314	rs13815	G	C	8949.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr22	43529517	rs2066910	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	43538780	rs151166687	C	CAA	356.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	43558926	rs6971	A	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	43564963	rs138931	C	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	43565443	rs138932	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	43565855	rs138933	C	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	43569608	rs138938	C	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	43572540	rs56878018	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	43575774	rs138945	A	C	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	43575935	rs33970602	C	T	12336.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr22	43576067	rs34630477	C	T	16804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=-0.372;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:2,647:1.00:649
chr22	43576904	rs2071723	G	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	43599917	rs138983	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	43600000	rs8141806	C	T	2783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.00;ReadPosRankSum=0.988;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:4,112:0.97:116
chr22	43603423	rs72619548	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	43603466	rs34576033	G	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr22	43603510	rs17003557	C	T	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	43603665	rs72619549	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	43604034	rs878034	C	T	4589.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	43608338	rs7364122	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	43608531	rs7284575	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	43608673	rs138989	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	43608690	rs7284854	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	43610207	rs138993	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	43618632	rs139005	CG	C	1858.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;MQ=60.17;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	43619200	rs6003114	G	A	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr22	43619404	rs6003115	C	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	43623353	rs129414	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	43623395	rs129415	C	G	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr22	43830848	rs6519374	C	T	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	43830996	rs2413761	C	T	19267.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=0.092;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:2,755:1.00:757
chr22	43831056	rs4331615	C	T	18442.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:2,719:1.00:721
chr22	43976396	rs9614382	G	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	44028174	rs200314912	CTTTTTTTTTT	C	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;QD=33.23;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	44030935	rs56335524	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	44083442	rs5764214	T	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	44112845	rs5764234	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	44178103	rs74957153	T	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr22	44223635	rs71313366	C	CCACA	326.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr22	44229492	rs138069	G	C	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	44236005	rs4149443	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	44258311	.	ACGCGCC	A	584.73	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	44280394	rs5764010	C	T	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr22	44280412	rs5764011	G	T	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	44282276	rs739231	A	G	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr22	44282307	rs739232	G	A	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	44283556	rs5764380	A	G	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	44283676	.	G	GAC	6643.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	44283677	.	CAGGAG	C	6642.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	44283687	rs143992164	GGCA	G	6332.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	44285667	rs713864	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	44285765	rs2017461	A	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	44287062	rs2071884	A	G	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr22	44287629	rs74445350	G	A	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr22	44324676	rs139051	A	G	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	44341986	rs2294917	T	C	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	44342116	rs2294918	A	G	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr22	44351351	rs2294920	T	C	1955.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.225;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.85;ReadPosRankSum=-0.605;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr22	44364594	rs5764434	C	T	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr22	44364794	rs2273031	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	44368039	rs6006595	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	44368204	rs3177036	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	44368728	rs34361615	A	AT	769.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.870;QD=8.75;ReadPosRankSum=1.134;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:29,59:0.67:88
chr22	44368741	rs932430	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:6,85:0.93:91
chr22	44372069	rs2073084	G	A	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	44372190	rs2073085	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	44372632	rs14315	C	T	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr22	44377442	rs4823182	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	44379822	rs10452	T	C	10775.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr22	44379838	rs8418	A	G	10318.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.760;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=0.752;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,406:1.00:407
chr22	44384881	rs16991288	G	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	44395389	rs2281292	A	C	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	44395451	rs1007863	T	C	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	44420156	rs112388263	T	A	81.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	44489868	rs1983609	T	C	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	44527227	rs2281269	T	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	44535904	rs11270419	G	GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=84.41;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	44559715	rs56412646	GA	G	10934.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr22	44559995	rs2272940	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	44564297	rs139095	A	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	44582499	rs79478	T	C	12038.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr22	44589857	rs139142	T	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	44594476	rs139151	T	C	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	44601499	rs139184	C	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	44602229	rs139186	A	C	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr22	44761631	rs5765807	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	44761797	rs5765809	T	A	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:4,196:0.98:200
chr22	44893563	rs5765689	A	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	45075738	rs763213	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	45075854	rs9626514	G	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	45075871	rs9626515	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	45075876	rs9626232	G	A	320.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	45126638	rs3761484	G	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	45126775	rs3761485	T	C	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr22	45128288	rs5764979	G	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	45128449	rs5764980	G	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	45182207	rs739176	G	A	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	45205158	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.135;QD=0.98;ReadPosRankSum=-0.053;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr22	45218223	rs136662	C	T	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	45258070	rs74652584	G	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	45283897	rs6006901	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	45287076	rs2285124	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	45287420	rs6007370	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	45291833	rs3752467	A	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	45312113	rs2239793	T	C	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr22	45312244	rs6519902	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	45316507	rs4823420	T	A	711.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	45593661	rs55790105	C	T	13733.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr22	45595721	rs5765217	A	G	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr22	45601277	.	G	A	1581.77	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	45603485	rs11705584	G	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	45603501	rs11703294	A	G	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	45603545	rs11705041	C	T	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	45603638	rs11703323	A	G	9341.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,376:0.99:378
chr22	45622014	rs6007506	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	45685002	rs1135360	A	G	14326.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr22	45718922	rs34063912	C	CTG	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.349;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.038;QD=14.46;ReadPosRankSum=-0.276;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr22	45723854	rs9615108	C	G	10812.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr22	45723960	rs9614638	G	A	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.760;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=9.402;MLEAC=1;MLEAF=0.500;MQ=56.72;MQRankSum=5.910;QD=31.75;ReadPosRankSum=-2.379;SOR=2.483;set=HC	GT:AD:AF:DP	0/1:10,67:0.87:77
chr22	45723968	rs28412847	C	T	2150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.369;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=12.975;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=4.994;QD=37.08;ReadPosRankSum=-1.271;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:10,48:0.83:58
chr22	45726345	rs7285172	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	45731182	rs738176	C	T	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	45732328	rs11704481	G	A	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	45736153	rs3827393	G	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	45736485	rs2064068	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	45741543	rs5765260	G	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr22	45748284	rs11375006	C	CT	5681.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	45757987	rs5764704	C	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	45767421	rs56174639	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	45767455	rs136569	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	45767599	rs136570	G	A	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	45767946	rs136572	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	45779335	rs136585	A	G	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	45779553	rs11090629	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	45782646	rs136591	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	45782903	rs6007010	T	C	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr22	45785840	rs8138001	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	45789642	rs136603	A	C	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	45794925	rs79154	C	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	45802760	rs202081360	AT	A	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.166;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr22	45809624	rs2272804	C	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	45810278	rs59404993	A	AC	11491.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	45813433	rs11320557	AT	A	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	45813889	rs10775780	T	G	257.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.83;ReadPosRankSum=-0.815;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr22	45813890	.	T	G	50	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5007;HP=14;HapScore=4;MGOF=6;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=50;QD=42.3856062736;SC=CCTACAGTTTTTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=9;TCF=3;TCR=6;TR=2;WE=45813898;WS=45813876;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr22	45821887	rs1022477	G	A	16181.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr22	45821956	rs1022478	C	G	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr22	45822161	rs5765345	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	45826880	rs2072770	G	A	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr22	45827020	rs5765352	G	A	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	45897997	rs3810631	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	45898117	rs3810633	T	C	18085.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr22	45898130	rs3810634	A	T	17983.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr22	45898252	rs3810635	T	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr22	45921359	rs1107180	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	45921631	rs6007075	C	T	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	45923827	rs136730	A	G	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	45924001	rs136731	T	TG	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	45927045	rs6006767	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	45927112	rs2239844	A	G	5652.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=0.430;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:2,225:0.99:227
chr22	45927220	rs6006768	C	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	45929200	rs11702924	T	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	45929577	rs105199	T	C	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	45929614	rs16994211	C	T	14081.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:2,538:1.00:540
chr22	45931262	rs2071938	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	45996110	rs2071871	A	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	46068144	rs2071872	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	46114398	rs138156	G	T	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr22	46505986	rs2474020	T	C	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr22	46594555	.	C	CTT	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.609;QD=11.12;ReadPosRankSum=0.813;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr22	46642725	rs73177046	C	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	46643023	rs55641018	A	C	16111.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr22	46643131	rs368537877	GA	G	16756.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr22	46643133	.	A	G	16914.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr22	46643135	rs200519607	G	GC	16954.73	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr22	46643964	rs9627280	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	46643984	rs73177049	A	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	46644168	rs9627281	A	G	15164.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr22	46652372	rs6008361	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	46652737	rs6008362	G	A	11817.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr22	46652929	rs6008365	G	A	9347.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr22	46652959	rs4508712	A	G	8433.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr22	46654323	rs6007740	G	A	12020.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr22	46655779	rs36125344	G	C	11178.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr22	46655948	rs6008384	T	C	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:1,401:1.00:402
chr22	46656246	rs7291444	T	G	15710.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:3,609:1.00:612
chr22	46656479	rs6519993	A	G	14833.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr22	46656511	rs9627324	A	G	13877.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr22	46656607	rs8143066	G	A	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr22	46656805	rs6519994	G	A	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	46657261	rs6007747	A	G	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr22	46657798	rs6007748	A	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	46658978	rs112735000	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	46659186	rs113101219	C	A	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	46664564	rs138035782	TTTTTG	T	3442.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=43.58;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	46664985	rs58531030	GC	G	2555.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:9,98:0.92:107
chr22	46665006	rs9615330	A	G	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	46674639	rs6008473	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	46677607	rs130642	T	C	10886.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr22	46679850	.	C	CG	543.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.453;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:77,47:0.38:124
chr22	46679851	rs6008505	T	G	632.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=15.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.684;SOR=1.889;set=HC	GT:AD:AF:DP	0/1:63,62:0.50:125
chr22	46680067	rs6008507	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	46682955	rs55926596	C	T	13253.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr22	46682976	rs55653327	C	T	16144.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr22	46684528	rs739165	C	T	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr22	46684558	rs739164	T	C	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	46685131	rs11703848	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	46685274	rs11704586	T	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	46685380	rs11705624	C	T	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	46704243	rs6008598	C	T	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr22	46704676	rs6008600	A	G	23509.77	.	AC=2;AF=1.00;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	1/1:1,918:1.00:919
chr22	46704916	rs6007819	C	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	46707907	rs6008612	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	46707924	rs6008613	G	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.66;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	46707928	rs6008615	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.963;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	46707954	rs6008616	A	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	46709881	rs6008622	G	A	11354.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr22	46711920	rs11446441	A	AC	10305.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr22	46712077	rs9615947	C	T	19134.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:1,725:1.00:726
chr22	46719100	rs6008684	C	G	9943.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr22	46722400	rs140054	T	C	17326.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:2,673:1.00:675
chr22	46722531	rs9615949	C	T	19690.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:1,762:1.00:763
chr22	46722560	rs6008700	C	T	13253.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:1,511:1.00:512
chr22	46724558	rs140053	T	C	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	46731689	rs11090865	G	T	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr22	46731771	rs11090866	G	C	22120.77	.	AC=2;AF=1.00;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	1/1:21,886:0.98:907
chr22	46731791	rs2272937	G	A	29959.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;set=Intersection	GT:AD:AF:DP	1/1:0,1163:1.00:1163
chr22	46739070	rs112770345	T	TTC	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	46746419	rs79354880	C	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	46748310	rs6008770	T	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr22	46752080	rs8135519	G	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	46765181	rs11273699	G	GTCAGGTCGCCGAC	15809.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.66;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr22	47393400	rs3747263	G	A	170.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	48023297	rs12053799	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr22	48024982	rs5845801	C	CA	654.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr22	48896933	rs8137750	C	T	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	48940553	rs4823540	T	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	48942315	rs5768722	T	G	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chr22	49042294	rs9617472	C	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	49103380	rs130147	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	49103660	rs132234	T	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	49176220	rs6010527	C	T	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	49667912	rs9616543	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	49667985	rs7289562	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	49668137	rs7288663	T	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	49668188	rs2688112	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	49834747	rs1016809	C	T	13584.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr22	49834931	rs9306540	G	C	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	50014002	rs135877	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	50017234	rs916362	A	G	8270.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	50018045	rs763128	G	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	50018069	rs2011097	A	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	50018497	rs5770594	G	A	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	50018639	rs4524218	G	A	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr22	50018651	rs135879	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.917;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	50018654	rs135880	T	A	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.20;SOR=2.139;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	50051007	rs6009803	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	50170674	rs148324843	C	T	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	50277494	rs149368184	G	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:3,202:0.99:205
chr22	50277835	rs910796	T	C	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	50277883	rs910797	A	G	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,309:0.99:311
chr22	50278438	rs910798	A	G	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr22	50278568	rs910799	A	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	50278642	rs910800	C	T	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr22	50280136	rs5770755	T	C	10517.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr22	50303575	rs144665682	G	A	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	50356274	rs28645887	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	50356302	rs28691713	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	50356555	rs4078443	T	C	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	50356693	rs4077129	T	C	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	50356850	rs1801645	C	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	50435480	rs5771069	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	50436846	rs79102851	G	GTCC	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50436884	rs115244935	C	A	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	50437976	rs7290572	G	T	4434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.546;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=0.959;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,172:0.99:173
chr22	50439430	rs137845	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50439755	rs137846	G	GCA	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50454825	rs7292558	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	50468907	rs738333	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	50468933	rs79298	G	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	50470516	rs11101958	C	T	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr22	50472712	rs12484423	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50485793	rs137906	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	50487567	rs137911	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	50488804	rs137913	CT	C	117.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.83;ReadPosRankSum=-1.363;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr22	50518723	rs79301	A	G	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	50547247	rs138217	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	50548099	.	CAA	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.358;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr22	50555486	rs126241	G	C	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	50555619	rs138222	C	T	2777.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.37;ReadPosRankSum=0.443;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:2,112:0.98:114
chr22	50564413	rs138242	A	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	50585467	rs140006487	TTGA	T	3512.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	50616656	rs7286904	T	C	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	50637597	rs8238	G	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	50639367	rs7293065	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	50639473	rs5771225	T	C	673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.103;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=1.442;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr22	50639528	rs5771226	T	C	845.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=-1.263;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr22	50639636	rs6010201	C	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	50639778	rs3747942	T	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	50639965	rs2272846	C	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	50646859	rs58098510	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.362;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr22	50647085	rs115291919	C	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:4,187:0.98:191
chr22	50647098	rs201931616	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:4,187:0.98:191
chr22	50654064	rs10605825	TG	T	35.06	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.77;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	50656096	rs2038050	A	G	11723.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr22	50657010	rs4838864	C	G	7125.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr22	50657112	rs11912397	C	T	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	50658053	rs6537642	A	G	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	50664612	rs4838865	A	G	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr22	50666223	rs56133520	G	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	50682062	.	AAG	A	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.494;QD=2.54;ReadPosRankSum=1.083;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr22	50684296	rs13058062	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	50684822	rs201238765	G	C	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr22	50685370	rs146379292	G	A	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	50685508	rs4838866	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	50687655	rs3830749	A	AG	3790.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	50687660	.	G	GT	802	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=4;HapScore=1;MGOF=21;MMLQ=22;MQ=60.09;NF=7;NR=44;PP=802;QD=16.2549019608;SC=GGGGGAGGGGGTGGGTGGGGA;SbPval=0.57;Source=Platypus;TC=57;TCF=8;TCR=49;TR=51;WE=50687668;WS=50687659;set=Platypus	GT:AD:AF:DP	1/1:6,51:0.89:57
chr22	50688235	rs738334	T	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	50688348	rs1555048	A	G	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	50689030	rs909688	A	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	50693479	rs5771281	A	G	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	50693521	rs5771282	C	T	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	50693534	rs6010218	A	G	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=47.89;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	50693538	rs6010219	G	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=45.58;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	50693554	rs6010220	A	G	9427.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr22	50694297	rs1129880	A	G	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	50695270	rs5771284	A	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	50699487	rs2272856	G	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=41.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	50699668	rs2272857	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	50703572	rs10626765	C	CAG	5247.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	50704661	rs2076139	T	C	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr22	50705059	rs742185	A	G	18873.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:4,715:0.99:719
chr22	50705466	rs760748	A	G	9425.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.078;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=7.414;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=0.791;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:2,373:0.99:375
chr22	50706381	rs36083586	G	A	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	50708731	rs9617050	A	G	2233.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.745;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=0.745;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr22	50713866	rs1042979	G	C	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	50714289	rs5771118	T	C	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr22	50714491	rs6010224	A	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	50715029	rs5771119	T	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	50722939	rs146267024	A	AC	3707.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:4,122:0.97:126
chr22	50724733	rs55709850	G	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr22	50728062	rs28379706	T	C	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	50757348	rs62241232	G	A	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr22	50857140	rs7293044	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.12;ReadPosRankSum=-1.880;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr22	50876077	rs9306550	T	C	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	50876235	rs5770779	T	C	10910.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr22	50882752	rs59017944	CT	C	1347.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:4,79:0.95:83
chr22	50895133	rs4824117	A	G	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	50898664	rs188834281	C	T	20259.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:3,782:1.00:785
chr22	50899755	rs373899699	AGG	A	3712.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.70;ReadPosRankSum=1.661;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:1,103:0.99:104
chr22	50900919	rs371831385	C	T	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr22	50901534	rs5771039	A	G	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	50902751	rs5771041	C	T	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.466;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	50903221	rs2076714	C	T	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr22	50905904	rs6010102	G	A	7240.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr22	50906108	rs6010103	G	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	50906146	rs7286288	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	50913208	rs144873419	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	50913338	rs148643232	G	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50913355	rs142088826	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50913394	.	CGCGGCGGCG	C	368.74	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50913429	rs4824154	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	50921694	rs2236031	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	50925672	rs2232878	T	C	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	50927447	rs139170143	C	CGTCCCTCCT	5345.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	50928026	rs2232885	G	A	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr22	50941985	rs6009975	T	C	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	50942121	rs13056405	C	T	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	50942709	.	C	CCT	642	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=5;HapScore=1;MGOF=53;MMLQ=22;MQ=59.58;NF=19;NR=8;PP=642;QD=24.7777777778;SC=CCACACCCCCCGGTGCCCGGC;SbPval=0.56;Source=Platypus;TC=27;TCF=19;TCR=8;TR=27;WE=50942717;WS=50942699;set=Platypus	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	50942761	.	A	G	1058	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=3;HapScore=1;MGOF=39;MMLQ=24;MQ=59.7;NF=40;NR=26;PP=1058;QD=16.557139584;SC=CCCGGTGCCCAGCCTTACCCC;SbPval=0.45;Source=Platypus;TC=70;TCF=44;TCR=26;TR=66;WE=50942769;WS=50942751;set=Platypus	GT:AD:AF:DP	1/1:4,66:0.94:70
chr22	50943004	rs762671	C	A	14014.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	50943010	rs762670	G	A	14099.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=3.093;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.34;ReadPosRankSum=1.462;SOR=0.294;set=HC	GT:AD:AF:DP	1/1:1,317:1.00:318
chr22	50943232	rs8136495	G	A	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr22	50943423	rs762669	G	A	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	50945256	rs131824	A	G	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	50946965	rs131823	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	50966197	.	CTT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=9.185;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=2.90;ReadPosRankSum=2.293;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr22	50968826	.	CAG	C	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.450;QD=1.95;ReadPosRankSum=0.852;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:227,36:0.14:263
chr22	51007636	rs111633396	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	51008904	rs141511126	G	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	51010668	rs112259265	C	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	51010788	rs131761	T	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	51010838	rs8137491	T	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	51011376	rs8142477	G	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	51011936	rs131760	T	C	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	51014840	rs8137301	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	51015210	rs140515	G	C	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	51016360	rs6520157	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	51018707	rs192728067	G	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	51018942	rs6010012	C	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr22	51019113	rs75187587	A	C	6339.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=2.390;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:2,249:0.99:251
chr22	51019142	rs74846249	G	T	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	51042484	rs56314791	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	51042513	rs140511	C	CG	2979.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	51043278	rs3219201	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	51043984	rs113898860	C	T	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	51045190	rs1140555	C	T	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	51045433	rs131736	C	T	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	51045480	rs131735	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	51048721	rs14136	G	A	8113.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr22	51048781	rs5770941	T	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	51064039	rs743616	G	C	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr22	51064141	rs762673	G	A	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	51113801	.	C	CTGTGTGTGTGTGTG,CTGTGTGTGTG	293.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:6
chr22	51117580	rs9616915	T	C	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr22	51135451	rs9616939	G	C	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	51135545	rs9616818	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	51171667	rs41281537	G	A	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	51182485	rs6009961	A	G	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr22	51183017	rs58651371	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	51183255	rs5771002	A	G	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=25.73;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr22	51219006	rs28729663	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	51220587	rs370156196	G	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.06;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	2699898	rs60233760	C	CT	113.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chrX	2700157	rs5939319	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chrX	2700202	rs5939320	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	2707734	rs17090623	C	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chrX	2712661	rs311173	C	T	2605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-2.399;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:225,143:0.39:368
chrX	2715324	rs311185	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chrX	2715425	rs4484858	A	G	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chrX	2724760	rs3749988	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	2726396	rs6567645	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	2729346	rs5982867	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.71;ReadPosRankSum=-1.541;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	2729540	.	TA	T,TAA	940.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.389;QD=15.42;ReadPosRankSum=-1.827;SOR=0.679;set=HC	GT:AD:AF:DP	1/2:3,30,28:0.49,0.46:61
chrX	2732356	rs34201156	C	CT	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chrX	2748051	rs57068689	T	C	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	2748253	rs6642032	G	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	2748292	rs6641656	C	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chrX	2761050	rs11797037	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chrX	2774478	rs5939132	A	G	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	2774609	rs17090628	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chrX	2777985	rs2306734	C	T	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chrX	2779570	rs2306735	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	2793725	rs72232490	CTA	C	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chrX	2816082	rs5939390	T	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chrX	2816343	rs116667417	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chrX	2827794	rs61456366	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.476;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chrX	2832742	rs211648	G	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	2833506	rs211649	G	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	2833856	rs211650	T	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	2836037	rs211653	G	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	2843879	rs73632980	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,66:0.46:145
chrX	2853283	rs55974713	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	2876197	.	G	A	483.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chrX	2942109	rs5939407	T	C	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chrX	2950961	rs5982634	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	2950998	rs5939411	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	2951434	rs5939155	C	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	2986061	.	C	CT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.795;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chrX	2999141	rs5983001	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	3002219	rs5983002	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	3002687	rs5983003	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	3007480	rs2290453	G	T	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	3190004	rs1726214	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chrX	3190161	.	A	AACACAC	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=1.602;QD=9.79;ReadPosRankSum=-0.498;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chrX	3190191	rs1726212	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chrX	3190297	rs1726211	C	T	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:191,133:0.41:324
chrX	3195109	rs1635207	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chrX	3228144	rs112101834	C	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chrX	3228411	rs1635233	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	3228663	rs1635234	G	C	84.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.02;QD=28.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	3228891	rs1635235	A	G	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	3235724	rs1635242	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	3236028	rs5982697	C	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.263;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chrX	3238167	rs1635245	T	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chrX	3238733	rs1974522	G	A	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chrX	3239545	rs1726199	C	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=25.76;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	3239979	rs3813167	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chrX	3240343	rs1635246	G	A	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-0.872;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:75,56:0.43:131
chrX	3241050	rs1635247	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,52:0.44:118
chrX	3241256	rs5983119	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	3241284	rs1635248	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.468;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:38,48:0.56:86
chrX	3241317	rs1635249	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	3241791	rs1635250	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chrX	3539376	rs369523977	CA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=13.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.824;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chrX	3592725	rs10871864	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:153,112:0.42:265
chrX	3592847	rs7880937	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	3592888	rs149622272	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chrX	3631167	rs3752362	A	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chrX	3735747	rs1054511	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	3736489	rs1133336	C	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:63,70:0.53:133
chrX	5811530	rs3747334	G	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.73;QD=46.86;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	5811532	rs3747333	G	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.12;QD=42.60;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	5821468	rs150108002	C	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.07;QD=27.85;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	5909290	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.285;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	5909617	rs9698586	A	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	5950922	.	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=-0.589;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	6975752	rs5978220	G	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chrX	6975782	rs868756	C	G	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	6995315	rs2379206	C	T	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	6995417	rs2379207	C	T	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:184,157:0.46:341
chrX	6995438	rs1803675	C	T	2950.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;MQ=59.85;set=Intersection	GT:AD:AF:DP	0/1:184,157:0.46:341
chrX	6995537	rs3747390	C	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chrX	7023678	rs1131197	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	7066051	rs1473666	A	C	9366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=-0.809;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:6,379:0.98:385
chrX	7890215	rs1183732	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.558;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chrX	8095173	rs1037521	T	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.972;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chrX	8138080	rs1058239	G	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chrX	8138160	rs1058238	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-3.046;QD=12.88;ReadPosRankSum=-1.569;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chrX	8138165	rs1058237	C	G	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-3.046;QD=12.88;ReadPosRankSum=-1.676;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chrX	8138170	rs75657421	CT	GC	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.206;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-3.287;QD=11.24;ReadPosRankSum=-1.138;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chrX	8270527	.	A	AAG	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.006;QD=10.32;ReadPosRankSum=0.688;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chrX	8270575	.	A	AAG	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.000;QD=24.61;ReadPosRankSum=0.624;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	8270577	.	GAA	G	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=-1.367;QD=8.24;ReadPosRankSum=0.627;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chrX	8270615	.	A	AAGAAAGAAAG	2010.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=8.033;MLEAC=1;MLEAF=0.500;MQ=64.67;MQRankSum=0.464;QD=21.39;ReadPosRankSum=3.374;SOR=2.722;set=HC	GT:AD:AF:DP	0/1:39,55:0.59:94
chrX	8270628	.	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=63.97;MQRankSum=-6.589;QD=12.38;ReadPosRankSum=-1.481;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:78,42:0.35:120
chrX	8270632	.	A	AAAGAGG	2001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.586;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=4.598;MLEAC=1;MLEAF=0.500;MQ=63.68;MQRankSum=-6.387;QD=15.40;ReadPosRankSum=-1.205;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:85,45:0.35:130
chrX	8467201	.	A	AAG	409.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.14;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	8467239	rs372703313	AAAAG	A	170.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.335;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chrX	8467240	rs375688514	AAAG	A	236.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.267;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chrX	8467277	rs200326511	GAAGA	G	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.211;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chrX	8475734	rs200940482	AAAAG	A	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.282;QD=27.86;ReadPosRankSum=0.282;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chrX	8501120	rs41303179	C	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	8503641	rs809446	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chrX	8504773	rs808120	G	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chrX	8504833	rs808119	C	T	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.670;QD=11.70;ReadPosRankSum=0.363;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:37,50:0.57:87
chrX	8700002	.	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	8759342	rs61732571	A	G	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.753;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:58,53:0.48:111
chrX	8761625	rs2188935	G	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	8766503	rs140609226	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chrX	8766941	rs148243105	C	A	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:290,286:0.50:576
chrX	8766943	rs58250037	A	G	5841.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:298,291:0.49:589
chrX	8998235	.	T	G	369.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chrX	9000321	rs5979009	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chrX	9000594	rs200449273	TG	T	1621.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.49;ReadPosRankSum=-0.151;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chrX	9000596	.	G	T	361.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.665;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chrX	9000701	rs5979010	A	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chrX	9050570	rs111872205	CAG	C	1877.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.260;QD=31.30;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chrX	9651865	rs111495346	A	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chrX	9659766	rs2301675	G	A	2657.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chrX	9659767	rs3214138	T	TG	2648.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chrX	9659863	rs2301674	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chrX	9660149	rs7057012	GT	TC	5504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.609;QD=18.23;ReadPosRankSum=0.056;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:163,139:0.46:302
chrX	9660156	rs7062597	T	C	5702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.864;QD=16.67;ReadPosRankSum=-0.308;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:184,158:0.46:342
chrX	9661110	rs3747431	C	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chrX	9661165	rs3747430	G	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chrX	9677590	rs183764590	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chrX	9677855	rs143042965	A	G	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=1.916;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:95,110:0.54:205
chrX	9693652	rs3044	G	A	239.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.66;ReadPosRankSum=-0.674;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chrX	9693655	rs1859002	G	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.38;ReadPosRankSum=0.949;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chrX	9754392	.	AGCCCCGGCCCCG	A	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=61.30;MQRankSum=1.564;QD=22.66;ReadPosRankSum=0.101;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chrX	9905342	rs2073945	A	G	5236.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:270,269:0.50:539
chrX	9907416	rs16985805	T	A	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=3.004;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:72,88:0.55:160
chrX	9914667	rs2073941	A	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	9914947	rs2073942	G	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	9935523	rs145798132	C	G	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:153,162:0.51:315
chrX	9935582	rs73478919	G	A	5157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=2.313;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:259,261:0.50:520
chrX	9936142	rs61249528	G	A	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:130,137:0.51:267
chrX	10031627	rs200945763	C	CA	301.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chrX	10059046	.	TAC	T	74.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	10085674	rs6530368	T	C	5134.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.029;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.67;ReadPosRankSum=-0.632;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,236:1.00:237
chrX	10093298	rs2285493	T	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	10098330	rs2285498	A	G	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	10102338	rs5934760	T	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	10104543	rs5978376	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chrX	10104585	rs4830697	G	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	10104606	rs3815014	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chrX	10107329	.	G	A	244	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=2;MGOF=83;MMLQ=27;MQ=60.0;NF=10;NR=1;PP=244;QD=25.3428375043;SC=GTCACCACTCGCTGACTGTGG;SbPval=0.64;Source=Platypus;TC=11;TCF=10;TCR=1;TR=11;WE=10107337;WS=10107319;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	10107389	.	T	TAAAAA	106	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.00;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	10180554	rs34148950	G	A	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	10491233	.	C	CA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.279;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chrX	10533042	.	TAA	T	609.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.625;QD=23.45;ReadPosRankSum=-1.567;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chrX	10533138	rs73479275	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chrX	11157535	rs1009758	G	C	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chrX	11157741	rs12395429	C	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.845;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chrX	11200260	rs7060317	G	C	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.459;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:132,127:0.49:259
chrX	11207252	rs2072125	G	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chrX	11272836	.	CA	C	226.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.884;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chrX	11308610	.	CAA	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=9.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.11;ReadPosRankSum=1.644;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chrX	11313027	rs946252	T	C	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	11778471	rs6530452	G	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.919;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chrX	11778783	rs113260622	C	CCTT	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	11779538	rs2107422	A	G	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-1.399;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:79,48:0.38:127
chrX	11779632	rs78624542	C	T	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,84:0.56:150
chrX	11786839	rs2525868	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	12628036	rs2304605	A	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,15:0.25:60
chrX	12628049	rs2304604	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	12633034	rs6654760	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	12722616	rs4469660	C	G	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	12724812	rs4532763	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chrX	12725042	rs11370163	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.236;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chrX	12725523	rs7877276	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chrX	12725779	rs7877197	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	12734585	rs67823099	T	C	3494.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:55,158:0.74:213
chrX	12828089	rs111383997	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.73;ReadPosRankSum=-0.735;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	12837558	rs5935399	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	12837952	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=59.27;NF=0;NR=3;PP=22;QD=18.9237375157;SC=TATCTTTATACTTCTTTCTCT;SbPval=1.0;Source=Platypus;TC=11;TCF=2;TCR=9;TR=3;WE=12837960;WS=12837942;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chrX	12924697	rs3764879	C	G	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	12924826	rs3764880	A	G	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chrX	12937237	rs5744078	C	T	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:226,113:0.33:339
chrX	12937804	rs5744080	C	T	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.622;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:453,172:0.28:625
chrX	12938471	rs5744081	C	A	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:192,112:0.37:304
chrX	12939112	rs2407992	G	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:263,122:0.32:385
chrX	12939303	rs5744082	G	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:387,199:0.34:586
chrX	12939928	rs2109135	T	C	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	12940291	rs5744085	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chrX	12940344	rs5741889	A	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chrX	12993511	rs115781169	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chrX	12994867	.	C	CT	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.045;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:57,32:0.36:89
chrX	13056654	rs4830483	T	C	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chrX	13337059	rs4830842	C	T	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chrX	13626403	rs2370236	T	C	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:31,90:0.74:121
chrX	13635937	rs5978653	C	T	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:132,258:0.66:390
chrX	13651020	rs142159607	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=1.045;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chrX	13651155	rs16979033	G	A	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.135;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:209,94:0.31:303
chrX	13681115	rs2361159	C	T	4407.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:112,208:0.65:320
chrX	13681638	rs5935649	C	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chrX	13681679	rs5935650	G	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chrX	13732497	rs146231075	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chrX	13734519	rs141824246	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chrX	13734539	rs2285633	T	C	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chrX	13734919	rs35084098	C	CTTTG	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	13752289	rs192390430	G	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chrX	13758375	rs2238908	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:200,97:0.33:297
chrX	13769593	rs139278370	G	GA	75.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.70;ReadPosRankSum=1.704;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chrX	13771576	rs3815049	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=2.476;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chrX	13774739	rs61746932	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	13775752	.	ATT	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=1.525;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	13779409	rs112117780	A	AT	420.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chrX	13803960	rs5978663	C	T	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	14599230	rs2074210	A	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	14599572	rs2074211	A	G	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	14622665	.	AGTGTGTGT	A	630	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=21;MQ=60.35;NF=0;NR=3;PP=630;QD=211.0;SC=GACAAACCAAAGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=3;WE=14622680;WS=14622655;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chrX	14625399	rs377596384	C	CT	795.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.062;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:15,55:0.79:70
chrX	14627144	rs2229963	T	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-1.368;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:171,55:0.24:226
chrX	14708781	.	TTC	T	59	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=26;MQ=60.0;NF=3;NR=1;PP=59;QD=16.5;SC=TAGTCTTTCTTTCTCTCTCTC;SbPval=0.27;Source=Platypus;TC=22;TCF=10;TCR=12;TR=4;WE=14708790;WS=14708771;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chrX	14708813	rs112316577	G	C	963.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chrX	14861675	rs2375726	A	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=-1.508;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chrX	14863468	rs146561204	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	14868806	rs2905223	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.962;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chrX	14930353	rs11400370	C	CT	692.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chrX	14933661	rs149860456	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-2.828;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chrX	15262813	rs112382242	T	TG	944.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.984;MLEAC=1;MLEAF=0.500;MQ=62.28;MQRankSum=6.073;QD=14.31;ReadPosRankSum=-0.288;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chrX	15262814	rs28628283	T	A	1018.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=62.38;MQRankSum=4.106;QD=15.67;ReadPosRankSum=-1.876;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chrX	15266819	rs1139868	C	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chrX	15301533	rs5935925	G	A	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chrX	15307563	rs5935930	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chrX	15308103	rs5934230	G	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chrX	15308163	rs6628942	A	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	15332451	.	CTT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=9.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.628;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chrX	15332558	rs5935944	A	G	3271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.507;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:108,163:0.60:271
chrX	15333842	rs4830529	T	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	15343401	rs35222742	C	CAA	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	15353483	rs45538433	G	C	6249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-0.318;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:163,299:0.65:462
chrX	15353689	rs4830938	T	C	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	15353780	rs116740080	A	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-3.816;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chrX	15373469	rs4531212	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	15381109	rs6629030	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chrX	15403351	rs5935959	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chrX	15443910	rs113711319	T	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chrX	15444217	rs111780638	A	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chrX	15473889	rs112944334	TA	T	384.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chrX	15509512	rs113708476	T	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chrX	15552540	rs112307212	T	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chrX	15552564	rs1877752	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chrX	15552573	rs34879154	G	GA	77.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chrX	15554602	rs28505625	T	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chrX	15584420	rs4646179	A	G	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	15589978	rs4646167	C	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	15591720	rs4646165	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	15768393	rs12013305	T	C	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	15782563	rs148746758	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	15792527	rs4364812	T	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.86;QD=27.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	15794764	rs5980183	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	15794815	rs5936050	G	A	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	15808795	rs4830994	T	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	15809346	rs16980151	G	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	15817963	rs5980192	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	15818114	rs62985661	AT	A	677.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	15822022	rs5934280	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	15826162	rs57639759	CA	C	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	15826556	rs5936061	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	15827524	rs5980193	T	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	15827563	rs6629131	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	15836648	rs5936062	T	G	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	15838366	rs2301724	C	T	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chrX	15864026	rs61741688	A	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	16141971	rs16980265	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chrX	16168467	rs4986945	T	C	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chrX	16168677	rs4986946	T	C	13475.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chrX	16608793	rs1527805	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	16627756	rs1048392	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chrX	16672416	rs114496978	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.89;ReadPosRankSum=-0.573;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	16688836	rs34210288	A	AT	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chrX	16701092	rs10588742	GTTC	G	868.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chrX	16709626	rs5980322	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:86,115:0.57:201
chrX	16761709	rs113147262	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chrX	16761726	rs112501475	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chrX	16761748	rs371508958	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.074;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chrX	16762002	rs4830562	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chrX	16847879	rs192513646	G	A	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=1.118;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:83,80:0.49:163
chrX	16852327	rs3747367	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	16859628	rs5924530	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:2,169:0.99:171
chrX	16867300	rs115956812	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chrX	16872015	rs11305571	AT	A	486.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.427;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-1.326;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chrX	16873058	rs5924532	A	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	16873108	rs150641871	GTT	G	954.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=-0.146;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chrX	16873176	rs66524293	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.41;ReadPosRankSum=-0.000;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	16873245	.	G	A	96	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=27;MQ=60.0;NF=0;NR=6;PP=96;QD=21.7952020912;SC=CAATTTTGGCGCACTACAACC;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=6;WE=16873253;WS=16873235;set=Platypus	GT:AD:AF:DP	1/0:3,6:0.67:9
chrX	16875705	rs114732321	T	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:109,122:0.53:231
chrX	16876980	rs4828536	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chrX	17080492	rs713355	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chrX	17086458	rs112548656	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chrX	17092152	rs1346246	G	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chrX	17092466	rs111582872	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chrX	17122102	rs714070	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	17153580	rs111394020	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chrX	17153630	.	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=20.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=2.032;SOR=4.613;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chrX	17157148	rs1946395	T	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.037;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chrX	17394091	.	C	T	368.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chrX	17705850	rs5901624	C	CT	10452.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chrX	17710353	rs11347866	CT	C	484.50	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:3,34:0.92:37
chrX	17745427	rs56908561	T	C	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	17745430	rs56691712	A	G	8308.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	17746244	rs3747295	T	C	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chrX	17746669	rs10643465	C	CTGTT	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	17763455	rs140657854	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	17819377	rs6527818	T	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	18183097	.	T	TA	28	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5296;HP=15;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=3;NR=0;PP=28;QD=10.3333333333;SC=TCTTAACAGTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3;WE=18183105;WS=18183093;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chrX	18189195	.	A	T	2392.77	.	AC=1;AF=0.500;AN=2;DP=266;set=Intersection	GT:AD:AF:DP	0/1:134,126:0.48:260
chrX	18264655	rs141977761	G	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chrX	18265832	rs16992372	T	C	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=0.920;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:36,51:0.59:87
chrX	18278199	rs5909435	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	18671795	rs56396491	AT	GA	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	18675868	rs202119131	AT	A	453.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chrX	18779721	rs2269584	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chrX	18800531	rs11360277	CT	C	121	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.741;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chrX	18824794	rs2239437	T	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chrX	18844012	rs2273247	G	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=1.649;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chrX	18924018	rs58948019	G	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.259;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chrX	18925943	rs111609818	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	18926186	rs148877451	T	G	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chrX	18929128	rs11291764	CT	C	620.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=1.625;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:6,40:0.87:46
chrX	18970447	.	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.919;QD=3.09;ReadPosRankSum=2.012;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chrX	19024468	rs28375015	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	19032033	rs35974297	G	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chrX	19032107	rs61742971	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chrX	19041592	rs5909263	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	19051860	rs112203703	T	TA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chrX	19058405	rs6633185	C	T	143.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.93;ReadPosRankSum=-0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	19361961	rs5955750	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chrX	19363863	rs10616757	TCC	T	1064.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chrX	19364644	rs7883320	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chrX	19364694	rs145749914	G	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chrX	19367979	rs144420560	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chrX	19372431	rs66727455	G	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chrX	19373647	rs11278403	GGGCCAA	G	3384.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:102,89:0.47:191
chrX	19373789	rs7058209	C	A	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.423;QD=9.62;ReadPosRankSum=-1.886;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chrX	19373839	rs1126565	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	19373967	rs7058518	C	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	19375710	rs7059233	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chrX	19375997	.	A	AATAAG	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.11;ReadPosRankSum=1.245;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	19377584	rs5955760	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.234;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chrX	19377881	rs709610	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chrX	19378784	rs1042456	C	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chrX	19378830	rs15816	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chrX	19387419	rs192064297	C	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chrX	19390727	rs141022850	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chrX	19390982	rs5955762	C	T	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,80:0.55:146
chrX	19390997	rs137950552	G	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chrX	19410698	rs138155842	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chrX	19418597	rs28417958	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chrX	19418891	rs138390601	G	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chrX	19426765	rs201864618	AAAAAT	A	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	19449835	rs139897557	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-2.136;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chrX	19449839	rs5955779	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=34.23;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	19475048	rs7888503	A	G	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:189,187:0.50:376
chrX	19478043	rs16981176	C	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chrX	19478294	rs5909118	T	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	19478332	rs7877434	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chrX	19478336	rs61014139	C	CA	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	19482476	rs5909299	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,68:0.42:161
chrX	19482641	rs7056190	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chrX	19533502	rs190448554	G	T	154.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	19701634	rs148609949	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	19854348	.	C	A	677.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:117,46:0.28:163
chrX	19935577	rs7061619	C	T	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chrX	20067879	rs60349697	T	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	20071046	rs34519770	T	C	7778.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chrX	20134980	rs17523345	G	A	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chrX	20180920	rs58008925	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chrX	20204461	rs2230488	G	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,64:0.74:86
chrX	20205856	rs7882807	A	C	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.453;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:111,39:0.26:150
chrX	20205918	rs116675221	T	C	9178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=1.806;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:178,429:0.71:607
chrX	20253004	.	CA	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.487;QD=2.13;ReadPosRankSum=-1.429;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:94,39:0.29:133
chrX	20284862	rs11276983	GGCGGCA	G	2268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.40;MQRankSum=1.520;QD=32.88;ReadPosRankSum=0.426;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:8,61:0.88:69
chrX	21444852	rs3752330	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	21444865	rs6528019	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chrX	21444890	rs6528020	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chrX	21519525	rs112637857	T	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.68;ReadPosRankSum=-0.712;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	21544904	.	ATTG	A	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-1.126;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:97,14:0.13:111
chrX	21861434	rs3213451	A	G	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chrX	21875821	rs11339991	TA	T	393.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	21985464	rs3747276	C	T	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chrX	21990455	rs7051872	G	C	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:33,110:0.77:143
chrX	22051034	rs178710	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chrX	22080239	rs7878806	C	T	381.79	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chrX	22108423	rs12013780	G	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chrX	22115197	rs58524357	A	G	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=1.889;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:56,97:0.63:153
chrX	22116211	.	GTT	G	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=1.057;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chrX	22116229	rs199998148	T	TA	320.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-0.532;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chrX	22116230	rs77048059	T	A	329.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.219;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chrX	22129512	rs4824224	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:180,82:0.31:262
chrX	22208793	rs2071583	T	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	22230975	rs3213493	T	C	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.804;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chrX	22231249	rs11416169	C	CA	937.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chrX	22239720	rs3752433	C	T	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	22244435	.	T	TTGAA	232.80	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	22244528	rs60807057	ATT	A	1094.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chrX	23398214	rs5926304	T	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:176,84:0.32:260
chrX	23682877	rs477914	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chrX	23682929	rs478051	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-0.654;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	23685964	rs496067	T	C	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:89,110:0.55:199
chrX	23689636	rs513572	AT	TC	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chrX	23693084	.	AT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.045;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chrX	23697485	rs795493	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	23700473	rs552105	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chrX	23700693	rs795489	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.642;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chrX	23701662	rs2665364	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	23723261	rs2270142	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=4.358;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:64,34:0.35:98
chrX	23739857	rs5970601	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	23740681	rs55779124	C	CAA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.30;ReadPosRankSum=1.586;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chrX	23748501	rs12388535	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.47;ReadPosRankSum=1.471;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chrX	23754161	rs16982784	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chrX	23761386	rs5925605	C	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	23761448	rs5925902	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chrX	23801593	rs3764885	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chrX	23858452	rs8680	G	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	23925834	rs5970618	A	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	23928482	rs113507987	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.998;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chrX	23930070	.	C	CTTTT	43.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	23945611	rs2707144	G	T	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	23953628	rs112872519	G	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.481;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chrX	23956561	rs112320608	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	24078357	rs7890400	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chrX	24084241	rs150782745	G	GT,GTT	1180.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.541;SOR=0.662;set=HC	GT:AD:AF:DP	1/2:7,33,29:0.48,0.42:69
chrX	24228389	rs2228659	T	C	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:191,188:0.50:379
chrX	24329779	rs189357682	C	G	9161.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chrX	24329793	rs139232512	C	T	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:112,143:0.56:255
chrX	24329884	.	A	AAGCAGC	2655	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=27;MQ=59.32;NF=19;NR=33;PP=2655;QD=20;SC=GCAGCAGCTAAAGCAGGAGCA;SbPval=0.21;Source=Platypus;TC=129;TCF=37;TCR=92;TR=52;WE=24329898;WS=24329871;set=Platypus	GT:AD:AF:DP	1/0:77,52:0.40:129
chrX	24329889	.	G	GCA	2373.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=6.955;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.008;QD=9.65;ReadPosRankSum=0.968;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:123,123:0.50:246
chrX	24329890	rs150066125	G	C,GCAGC	8935.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=320;set=Intersection	GT:AF:DP	1/2:0.50,0.48:246
chrX	24330071	rs147318848	G	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.02;QD=27.30;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	24330110	rs140998641	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.46;QD=26.48;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	24330137	rs144856212	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.70;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	24330557	rs148863411	C	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.102;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=45.24;MQRankSum=0.493;QD=6.61;ReadPosRankSum=-0.350;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chrX	24330575	rs200391334	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.43;QD=32.05;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	24331328	rs150934306	A	G	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-0.735;QD=7.01;ReadPosRankSum=-0.374;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chrX	24381387	rs1207577	G	C	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chrX	24382173	rs202005573	C	T	2492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-7.505;QD=7.25;ReadPosRankSum=0.454;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:204,140:0.41:344
chrX	24382200	rs200289296	A	G	3448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.724;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-7.511;QD=7.53;ReadPosRankSum=-0.993;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:261,197:0.43:458
chrX	24382373	.	TTGCTGCTGCTGC	TTGCTGCTGCTGCTGCTGC,T	41.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=382;set=Intersection	GT:AF:DP	0/1:0.11:139
chrX	24382429	.	CCTGCTCCTGCTCTAGCTGCTGCTG	C	2302	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=1;MMLQ=25;NF=7;SC=TGCTGCTGCTCCTGCTCCTGC;Source=Platypus;WE=24382460;WS=24382416;set=Platypus	GT:AD:AF:DP	1/0:41,63:0.61:104
chrX	24382950	rs16982979	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:93,42:0.31:135
chrX	24383061	rs11796308	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chrX	24383626	rs7053120	T	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-1.506;QD=7.56;ReadPosRankSum=2.148;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chrX	24483551	rs72623011	T	C	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.168;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:69,75:0.52:144
chrX	24523517	rs41311505	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chrX	24536954	.	GCACACACACA	G,GCA	738.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=30;set=Intersection	GT:AF:DP	1/2:0.68,0.32:19
chrX	24580746	rs1882403	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	24593453	rs3833417	GA	G	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-2.129;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chrX	24625819	rs12116104	C	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	24637032	.	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.970;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chrX	24637193	rs7060616	A	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,67:0.46:145
chrX	24734414	rs11573324	A	C	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:96,108:0.53:204
chrX	24745028	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.095;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chrX	24751958	rs4058344	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	24760276	rs113389943	AC	A	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chrX	24767219	rs55716466	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	26157220	rs5944317	C	T	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chrX	26157296	rs112739602	A	G	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chrX	26157792	rs5944318	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	26179532	rs5943854	A	G	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chrX	26212101	rs112103680	C	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:164,192:0.54:356
chrX	26235454	.	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DP=232;set=Intersection	GT:AD:AF:DP	0/1:122,103:0.46:225
chrX	26235467	rs147662585	A	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:131,106:0.45:237
chrX	26577173	rs5944524	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chrX	27478926	rs151016097	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chrX	27480794	.	G	C	1255.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chrX	27481063	rs6653771	T	C	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:141,159:0.53:300
chrX	27765065	rs183301101	G	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:141,128:0.48:269
chrX	27765399	.	AGAGGAGGAG	A,AGAGGAGGAGGAGGAG	983.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.48;QD=31.73;SOR=1.402;set=HC	GT:AD:AF:DP	1/2:0,22,9:0.71,0.29:31
chrX	27766776	rs45553337	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chrX	27839572	rs1368769	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	28807345	rs12009069	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=-0.431;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	28807442	rs6526806	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	29417510	rs4829347	C	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	30236658	rs6526962	T	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	30236878	rs2529541	G	A	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	30237003	rs2074793	C	T	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.06;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	30237003	.	CA	TA,TG	470	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=33,16;NR=34,13;PP=470,428;QD=7.53389869473;SC=CCTCAACATCCACTAAGAGCC;SbPval=0.56;Source=Platypus;TC=69;TCF=34;TCR=35;TR=67,29;WE=30237012;WS=30236993;set=Platypus	GT:AF:DP	0/1:0.97:69
chrX	30237004	rs7878409	A	G	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.723;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:60,60:0.50:120
chrX	30254376	rs2071309	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	30261002	rs2071311	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	30261158	rs2856733	G	C	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chrX	30323916	rs3788891	T	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chrX	30323948	rs3788890	T	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chrX	30326983	rs2269345	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:158,163:0.51:321
chrX	30577846	rs887369	A	C	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chrX	30671896	rs12854653	G	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	30712796	rs5927587	G	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	30715827	rs2035432	C	T	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chrX	30742549	.	C	A	92.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chrX	30742592	rs75486718	GA	G	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chrX	30742691	rs6631161	T	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chrX	30745790	rs5927596	A	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chrX	30872602	rs5927629	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chrX	30877477	.	C	CCACACACACACACA	433.73	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	31089930	rs438870	C	T	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:224,191:0.46:415
chrX	31132797	rs10536600	CGG	C	1033.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	31132806	rs1269041	G	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.44;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	31165257	rs3816796	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=-0.009;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chrX	31165667	rs200534475	AAAAG	A	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=-0.060;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chrX	31191589	rs2404496	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	31196188	rs16989418	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chrX	31196999	rs143341281	C	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	31200832	rs3833412	A	AT	584.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chrX	31224684	rs2293668	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chrX	31224881	rs2293667	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chrX	31496350	rs1800280	C	T	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	31496426	rs1800278	T	C	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.603;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:77,81:0.51:158
chrX	31496431	rs41305353	T	A	3232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.33;ReadPosRankSum=-1.908;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:73,86:0.54:159
chrX	31526200	rs3788893	C	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	31854782	rs1379871	G	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chrX	31854795	rs200474603	A	AT	2154.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chrX	31893253	rs186199095	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chrX	32053662	rs2222852	G	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:59,85:0.59:144
chrX	32305619	rs3788896	A	T	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chrX	32305879	rs10664567	A	AAT	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chrX	32360466	rs6527184	C	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chrX	32361033	rs7891425	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.245;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chrX	32364030	rs72468623	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chrX	32472771	rs193249735	T	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.911;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chrX	32490513	rs72468675	T	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	32503194	rs228406	T	C	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	32563263	rs228373	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chrX	32563488	rs115571	A	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chrX	32583740	rs61413714	G	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chrX	32583942	rs1800267	G	A	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.920;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:107,109:0.50:216
chrX	32591931	rs5927083	T	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:172,123:0.42:295
chrX	32602011	.	TAG	T	162.76	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chrX	32659525	.	GTATATATA	G	169.74	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chrX	32659551	rs57325184	A	C	220.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.54;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chrX	32659553	rs57815999	A	C	220.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.54;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chrX	32659592	rs60180387	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.210;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chrX	32716110	rs1800265	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	32868070	rs3764763	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	33146219	rs140077080	C	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:94,96:0.51:190
chrX	33229437	rs113726961	A	T	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.050;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:55,30:0.35:85
chrX	33357272	rs73463959	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:113,65:0.37:178
chrX	35818800	rs7054497	A	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chrX	35938045	rs6629019	C	T	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:169,194:0.53:363
chrX	35944077	.	A	AT	201.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chrX	35969499	rs6632426	A	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chrX	35971670	rs6632432	A	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.263;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chrX	35971684	rs6629023	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=3.068;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chrX	35974379	rs148122184	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chrX	35984887	rs10482306	G	A	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	35984958	rs10482240	A	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chrX	35990124	rs5902124	TA	T	101.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	35993486	rs4412518	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	36007614	rs6629027	T	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	36057261	rs6632464	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chrX	36089842	rs73468990	T	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chrX	36090118	rs16998527	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	36091509	rs2336656	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	36118050	rs5973573	G	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	36156447	rs376682738	AT	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.454;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chrX	36162664	rs5973599	C	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chrX	36162684	rs112700338	C	CTG	2998.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	36253971	rs28406365	G	A	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	36254065	rs28473164	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chrX	36269601	rs5972034	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	36298580	rs5973634	A	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	36397643	rs5972043	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-3.229;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chrX	36403036	rs6527569	A	G	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chrX	37026469	rs61730911	C	A	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.43;ReadPosRankSum=-0.877;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:45,43:0.49:88
chrX	37026473	rs61730912	C	A	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=-0.608;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:48,43:0.47:91
chrX	37026485	.	TG	T	1427.73	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,55:0.53:103
chrX	37028127	rs73631164	A	G	9783.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:189,435:0.70:624
chrX	37029254	rs1995914	A	C	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chrX	37300193	rs199754470	AC	A	148.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	37515166	rs5963876	G	T	226.81	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chrX	37518806	rs12009345	C	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	37518884	rs142780377	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chrX	37526763	rs146169882	C	CT	177	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chrX	37545364	rs28940593	C	T	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.828;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:159,156:0.50:315
chrX	37641526	rs4422908	C	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	37655143	rs368345014	ATG	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=1.368;SOR=3.236;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	37663234	rs2228117	G	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chrX	37700013	rs376392122	AC	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=1.150;QD=18.18;ReadPosRankSum=0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	37700015	.	ACACAC	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=1.150;QD=18.18;ReadPosRankSum=0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	37701048	rs11771	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chrX	37701208	rs5964203	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chrX	37883200	rs73463468	A	G	87.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	37932886	rs4827330	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chrX	37935994	rs5918468	T	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chrX	37955336	rs73632456	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chrX	37967868	rs5918476	T	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	37981474	rs56406900	T	A	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chrX	38009222	rs112255357	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	38019532	rs192637941	T	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	38033415	rs35474361	T	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,46:0.56:82
chrX	38037404	rs56837857	T	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	38128870	.	AATAT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chrX	38135710	rs199566268	A	AATTCATGT	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=0.471;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chrX	38146195	rs151247357	A	T	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:166,174:0.51:340
chrX	38157522	rs10719444	CA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=1.854;QD=6.84;ReadPosRankSum=0.696;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chrX	38169777	rs35587043	T	TA	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chrX	38180113	rs41303211	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.68;ReadPosRankSum=1.054;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chrX	38182130	rs111631988	T	C	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.657;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:70,64:0.48:134
chrX	38226603	rs1800321	A	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.419;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:57,63:0.53:120
chrX	38262808	rs2235125	G	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	38271377	rs3215429	A	AT	230.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=20.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	38420691	rs76862367	G	A	295.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.14;ReadPosRankSum=1.328;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chrX	38420765	rs3833408	TGCC	T	2465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.855;QD=20.72;ReadPosRankSum=-0.102;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:54,65:0.55:119
chrX	38420987	rs6610150	G	C	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chrX	38422214	rs6610152	T	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chrX	38425551	rs6651709	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chrX	38515168	rs5917614	G	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	38533570	rs111440990	C	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	38534932	rs370158518	T	G	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:83,89:0.52:172
chrX	38535174	rs4826996	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	39909033	rs5963724	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	39909318	rs116105080	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chrX	39913070	rs148923231	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chrX	39914883	rs115681005	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	39922359	rs3810694	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	39932907	rs6520618	T	C	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chrX	39933339	rs5917933	A	G	8988.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chrX	39934488	rs6610384	C	T	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chrX	40450602	rs34217273	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chrX	40456961	rs3112299	G	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	40459849	rs5963810	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	40460040	rs7691	T	C	361.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-0.272;QD=17.23;ReadPosRankSum=0.489;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chrX	40464822	rs35798522	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-1.362;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chrX	40496354	rs17145855	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chrX	40506425	rs4073734	GA	TT	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chrX	40506697	rs6610447	A	G	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	40551993	rs10127014	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chrX	40552243	rs7052408	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chrX	40556251	rs73471367	C	A	83.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chrX	40556492	rs5918029	C	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	40569391	.	AAAATG	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.280;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chrX	40571391	rs7887325	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chrX	40571413	rs4827226	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	40573157	rs6520683	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chrX	40573774	rs58565986	A	C	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-3.542;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chrX	40993907	rs17145961	T	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=0.508;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	40993938	rs56367456	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=2.403;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chrX	40996313	rs113937187	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chrX	40999853	rs41298468	C	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-1.599;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chrX	41007940	rs1978255	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chrX	41010474	.	CT	C	26	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=26;QD=20.0;SC=CATCTACCTCCTTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=41010482;WS=41010464;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chrX	41012102	rs2302380	G	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chrX	41030903	rs41311841	T	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.424;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.699;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	41056877	rs112930317	CTTT	C	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	41058132	rs3788877	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.97;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	41060613	rs1321127	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chrX	41073730	rs7051021	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chrX	41073734	rs2058321	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chrX	41198456	rs2275943	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chrX	41203119	rs2275944	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chrX	41383297	.	GA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.391;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chrX	41524788	rs200400188	AATCCAAATAAAAAGTT	A	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	41554814	rs913602	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	41587218	rs1023065	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	43571197	rs1800464	A	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chrX	43591036	rs6323	G	T	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chrX	43595428	rs2235186	A	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	43599897	.	ATT	A	379.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-0.386;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chrX	43601142	rs979606	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	43601363	rs979605	A	G	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.179;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:50,92:0.65:142
chrX	43603391	rs1137070	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chrX	43627893	rs148113949	T	C	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:93,99:0.52:192
chrX	43627999	rs1799836	T	C	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	43628853	.	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=1.383;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chrX	43628854	.	A	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=1.383;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chrX	43741616	rs1181251	G	C	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	44008011	rs73481049	A	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chrX	44202890	rs5902346	G	GC	7332.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chrX	44397886	rs41298444	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	44401829	rs5952590	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	44402201	rs7054700	G	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	44703935	rs1045031	T	C	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:156,140:0.47:296
chrX	44833826	rs112536942	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	44833841	rs6611055	C	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	44834045	rs200529431	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.640;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chrX	44913052	rs5952285	T	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chrX	44920068	rs3788869	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chrX	44935877	.	C	CT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.734;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chrX	44935924	rs10605935	CT	C	438.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.307;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chrX	44949153	rs142238688	T	C	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chrX	44949232	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	44966795	rs5952682	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chrX	44966805	rs11343829	GT	G	556.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chrX	45011340	rs4824527	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	45013523	.	C	CCTATCTAT	165.90	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	45017166	rs5952693	A	C	206.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	45050973	rs4239958	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	45606307	.	T	TGTGTGTGTGA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.34;ReadPosRankSum=0.439;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chrX	46321944	rs11342771	CA	C	1171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.552;QD=16.98;ReadPosRankSum=-2.300;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:11,58:0.84:69
chrX	46321961	.	A	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.276;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.777;QD=6.42;ReadPosRankSum=-2.084;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chrX	46321971	rs73486862	T	C	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.787;QD=12.20;ReadPosRankSum=-1.567;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:63,41:0.39:104
chrX	46466760	rs2072840	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.81;ReadPosRankSum=-0.295;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chrX	46472666	rs6611276	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	46472826	rs3208940	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	46618321	rs1056846	C	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	46737138	rs58164919	G	GGT	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chrX	46893249	rs5906311	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	46940374	rs111697791	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chrX	46949403	rs6611330	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chrX	46952219	rs4480242	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	47004861	rs5952419	T	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chrX	47036113	rs10641366	G	GTC	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=-0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.85;ReadPosRankSum=0.251;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chrX	47041414	rs112102343	C	T	6765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.265;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:357,339:0.49:696
chrX	47057647	rs4468050	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	47061018	rs4239964	C	G	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	47062256	rs7877968	T	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:141,120:0.46:261
chrX	47062705	rs191827422	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chrX	47065589	rs5953008	C	T	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:177,186:0.51:363
chrX	47065629	rs5953009	G	A	10671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-1.404;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:249,269:0.52:518
chrX	47065636	rs5953010	G	C	10844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=-1.877;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:254,288:0.53:542
chrX	47065903	rs5953011	G	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:64,92:0.59:156
chrX	47069288	rs17144858	C	G	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:134,131:0.49:265
chrX	47070261	rs2230147	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:97,106:0.52:203
chrX	47070468	rs143044923	A	C	6168.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:346,321:0.48:667
chrX	47073651	rs73630264	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chrX	47078545	.	T	C	23	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=0.9998;HP=1;HapScore=2;MGOF=27;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=23;QD=28.8856062736;SC=CCCTCCTCCTTCAGAACCCAC;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=47078553;WS=47078535;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	47082520	rs5953015	A	G	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:159,131:0.45:290
chrX	47084037	rs5952422	A	G	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:162,160:0.50:322
chrX	47086347	rs6417923	G	A	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	47098989	rs60470508	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chrX	47106942	rs10608095	CAA	C	877.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chrX	47269516	rs6608717	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chrX	47308268	rs34391244	A	G	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.503;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:150,93:0.38:243
chrX	47343254	rs2071778	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:93,65:0.41:158
chrX	47372903	.	A	C	33	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5081;HP=4;HapScore=2;MGOF=0;MMLQ=26;MQ=51.38;NF=3;NR=2;PP=33;QD=13.5542425094;SC=CCCTCGGACAACCCCTCTCCC;SbPval=0.71;Source=Platypus;TC=7;TCF=4;TCR=3;TR=5;WE=47372911;WS=47372893;set=Platypus	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	47424315	rs370026622	C	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:120,107:0.47:227
chrX	47430509	rs34987183	AGT	A	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-2.672;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chrX	47430613	.	T	TGG	348.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=5.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.179;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chrX	47430614	.	GT	G	714.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=2.215;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chrX	47430615	rs67867352	T	G	843.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.450;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:58,44:0.43:102
chrX	47430616	rs67832123	GT	G	411.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.076;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:71,29:0.29:100
chrX	47432120	rs113373259	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	47435639	rs377385507	AGACAAAG	A	9380.73	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:386,254:0.40:640
chrX	47435965	rs62636605	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,86:0.51:170
chrX	47436047	rs12394306	A	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chrX	47444879	rs5953060	G	C	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chrX	47444985	rs4898	T	C	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-1.376;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:75,107:0.59:182
chrX	47445286	rs6609533	A	G	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:200,221:0.52:421
chrX	47466361	rs1142636	A	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chrX	47483800	rs1048118	G	A	5410.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:151,257:0.63:408
chrX	47483925	rs2235182	A	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chrX	47486486	rs909523	C	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chrX	47487912	rs11436787	T	TG	6020.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	47487916	rs8177072	T	A	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chrX	47488003	rs8177071	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chrX	47519504	rs61032756	C	CCCTTCCTTCCTT	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chrX	47658046	rs723119	C	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:74,90:0.55:164
chrX	47662972	rs909713	T	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chrX	47663200	rs1207505	G	A	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:110,76:0.41:186
chrX	47695547	rs1207491	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chrX	47695742	rs35084954	CT	C	3227.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:152,115:0.43:267
chrX	47747296	rs3765546	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chrX	47755110	rs11796175	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	47755164	rs3949810	C	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	47757758	rs5906510	T	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	47918205	rs501128	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chrX	47919401	rs139073512	G	A	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,112:0.47:237
chrX	47920356	rs727079	A	G	7486.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chrX	47927449	rs2152823	G	A	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.676;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:58,59:0.50:117
chrX	47927554	rs199852662	AGAAG	A	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.748;QD=16.70;ReadPosRankSum=-0.624;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	47969530	rs111286043	C	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chrX	47970727	rs5952474	C	T	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:208,207:0.50:415
chrX	48049666	rs5906557	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	48053521	rs4239967	T	C	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chrX	48054740	rs4824675	C	G	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chrX	48073924	rs4593689	T	C	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chrX	48116786	rs7886344	C	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chrX	48123139	rs56131009	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-0.061;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chrX	48164138	rs5906631	A	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	48320301	rs2293952	C	G	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:122,102:0.46:224
chrX	48326216	rs2293953	A	G	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chrX	48337234	rs5952506	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=-0.453;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chrX	48337620	rs73483892	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,71:0.55:130
chrX	48337672	rs5953240	T	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chrX	48339980	rs760394	G	A	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:208,192:0.48:400
chrX	48339985	rs2070991	C	T	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:199,214:0.52:413
chrX	48340012	rs73483894	C	T	4955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.011;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:252,247:0.49:499
chrX	48369969	rs111771187	G	A	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chrX	48371054	rs35018140	C	T	4303.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:267,223:0.46:490
chrX	48374519	rs34252975	G	A	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:172,144:0.46:316
chrX	48378985	rs367876867	AAC	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-1.171;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chrX	48386568	rs73485729	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chrX	48399666	rs41312120	T	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chrX	48418126	rs2293948	A	G	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chrX	48418659	rs235836	G	A	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	48432791	rs2661105	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	48433858	rs6651673	C	T	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:188,195:0.51:383
chrX	48435928	rs235829	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chrX	48460314	rs235842	A	G	7863.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chrX	48542816	rs193922413	A	AC	8950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=1.387;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:414,378:0.48:792
chrX	48544650	rs235423	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	48620183	rs5906707	G	A	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.635;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:94,44:0.32:138
chrX	48624220	rs143505421	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chrX	48649426	rs139472040	A	AG	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.39;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	48649449	rs62600348	T	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=45.06;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	48649456	rs66717003	T	G	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=40.68;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	48672788	rs2075840	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chrX	48676839	rs2075837	G	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,107:0.52:205
chrX	48690416	rs6520383	G	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	48690749	rs11538178	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	48694053	.	T	C	50.74	.	AC=2;AF=1.00;AN=2;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	48751471	rs1128363	A	G	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chrX	48759965	rs3027516	C	A	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:132,140:0.51:272
chrX	48767196	rs151120284	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:126,89:0.41:215
chrX	48768695	rs370341804	GCA	G	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-1.308;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:122,18:0.13:140
chrX	48774940	rs3027514	A	G	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	48780469	rs142390277	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chrX	48820064	rs3027483	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chrX	48834882	rs3027478	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	48837546	rs3027477	G	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	48839478	rs7052213	G	A	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:152,122:0.45:274
chrX	48896944	rs73632396	T	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chrX	48898176	rs60309712	C	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.99;ReadPosRankSum=1.115;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	48898183	rs7056903	C	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	48900572	rs12007043	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chrX	48900847	rs58910174	T	C	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-1.670;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:120,90:0.43:210
chrX	48900900	rs4824738	T	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.573;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	48919746	rs60903495	T	C	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:211,147:0.41:358
chrX	48931374	rs6609827	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chrX	48935105	rs55719739	A	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chrX	48935817	rs12007449	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chrX	48970655	rs34057359	C	T	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:181,149:0.45:330
chrX	48970735	rs12012419	T	C	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:202,177:0.47:379
chrX	48972721	rs199790158	TGAG	T	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chrX	48973297	rs73632401	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chrX	49021256	rs5906744	A	G	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chrX	49021537	rs5905720	G	C	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chrX	49022276	rs5953269	C	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=2.935;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	49022286	rs72619037	C	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.14;SOR=2.876;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	49022291	.	GT	G	2665.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	49022293	rs75416104	C	G	2705.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=2.872;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	49022293	.	CAA	GAG	1265	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=27;NR=5;PP=1265;QD=41.2021210894;SC=GAACGCCTGTCAAGGGAGATT;SbPval=0.85;Source=Platypus;TC=48;TCF=37;TCR=11;TR=32;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:16,32:0.67:48
chrX	49022295	rs138365388	A	G	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=2.797;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	49022309	rs73634213	C	A	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=1.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	49022309	.	CAA	AAG	2442	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=46;NR=16;PP=2442;QD=40.2494818526;SC=AGATTTCTCTCAAGGTCAGGG;SbPval=0.53;Source=Platypus;TC=62;TCF=46;TCR=16;TR=62;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	49022311	rs7880193	A	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=1.760;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	49022700	rs4824462	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	49030776	rs200730422	AGT	A	4383.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:156,156:0.50:312
chrX	49035816	rs56969968	C	A	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:156,125:0.44:281
chrX	49040115	.	A	AGT	4056.73	.	AC=1;AF=0.500;AN=2;DP=388;set=Intersection	GT:AD:AF:DP	0/1:188,143:0.43:331
chrX	49065081	rs139409733	C	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,84:0.55:154
chrX	49069366	rs2071316	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chrX	49070813	rs2071317	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	49071964	rs2075866	A	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	49074556	rs188142486	G	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chrX	49077583	rs2869212	G	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	49081291	rs2235127	G	A	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chrX	49084492	rs6609854	C	T	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=1.175;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:110,119:0.52:229
chrX	49087487	rs5905724	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	49092311	.	ACACACACG	A	265.75	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.48;QD=33.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	49093528	rs2294016	T	C	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chrX	49098631	rs2294018	A	G	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chrX	49099232	rs138580811	G	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chrX	49103097	rs2294019	T	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	49103224	rs2294020	G	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	49114894	.	C	A	726.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chrX	49143033	rs147591123	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chrX	49370511	rs35846904	A	AAAT	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chrX	49454167	.	AAAAAAAAAAAAATATATATATAT	A	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=29.199;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.041;QD=13.59;ReadPosRankSum=1.624;SOR=2.777;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	49454214	.	T	C	324.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.126;QD=32.49;ReadPosRankSum=-1.036;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chrX	49458624	.	GACACACAC	G,GACAC	977.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=31;set=Intersection	GT:AF:DP	1/2:0.59,0.41:27
chrX	49459166	rs73483968	A	G	59.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.95;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	49767832	rs456615	A	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	49767835	rs456617	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	49767904	rs149259	A	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	49772948	rs17174054	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=1.411;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chrX	49807016	rs111464924	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chrX	49853341	rs7063765	G	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chrX	49854942	rs34173954	C	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:111,93:0.46:204
chrX	49920787	rs12013263	C	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chrX	49921042	rs12013079	G	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	49955729	rs78668179	C	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:141,139:0.50:280
chrX	49955783	rs73493766	G	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:82,64:0.44:146
chrX	49956847	rs17174077	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	49956937	rs113699042	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chrX	49957216	rs12011833	G	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:81,101:0.55:182
chrX	49957346	rs12012704	G	C	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chrX	49965583	rs113056089	T	C	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:141,184:0.57:325
chrX	49965693	rs184611762	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chrX	50028045	rs73493797	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chrX	50054570	.	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.550;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chrX	50054577	rs187672841	T	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=-0.218;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chrX	50054584	.	G	GT	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=1.881;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chrX	50054596	.	TG	T	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.10;ReadPosRankSum=1.630;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	50054600	rs112309206	G	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.27;ReadPosRankSum=1.356;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	50085159	rs145542906	C	G	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.787;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	50090482	rs113855553	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.63;ReadPosRankSum=0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chrX	50090491	rs73497511	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.31;ReadPosRankSum=0.319;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chrX	50094549	rs17003332	A	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.811;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chrX	50111863	rs146409447	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chrX	50112037	rs140808794	G	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,70:0.51:138
chrX	50118957	rs4074321	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chrX	50119188	rs4074319	G	A	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chrX	50120032	rs4590578	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	50121146	rs11415594	A	AG	2230.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	50121849	rs5915424	A	T	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	50122480	rs200531682	A	AT	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=1.789;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chrX	50122509	rs4275357	A	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	50125600	rs144819611	G	A	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.820;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chrX	50129369	rs5961179	A	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	50130544	rs7883609	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,67:0.54:123
chrX	50130717	rs67155896	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:69,89:0.56:158
chrX	50130803	.	CT	C	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.950;QD=8.10;ReadPosRankSum=1.002;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chrX	50131409	rs17003340	T	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chrX	50134383	rs1934192	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chrX	50134444	rs138086016	A	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,72:0.46:157
chrX	50134597	rs143191488	C	T	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,55:0.51:107
chrX	50136406	rs149840864	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chrX	50143965	rs1934190	G	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	50146413	rs151168854	T	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chrX	50146570	rs4143304	C	T	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	50146620	rs138388538	T	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chrX	50165595	.	A	AAC	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=2.438;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chrX	50339997	rs17003365	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chrX	50350728	rs6614552	T	C	2625.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=26.52;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	50350758	rs201922875	C	CTGCTGCTGCTGT	5059.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	50350974	rs61753881	A	G	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:126,121:0.49:247
chrX	50351278	rs12009880	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	50648427	rs149705584	G	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chrX	50648880	.	C	CAA	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-1.097;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chrX	50658683	rs73488037	A	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.054;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	50658871	rs114823607	T	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:110,89:0.45:199
chrX	50659210	.	C	CTCT	1517.73	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chrX	50659280	rs17003221	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:101,80:0.44:181
chrX	51075706	rs373768767	C	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.575;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chrX	51075841	rs2625875	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-6.121;QD=0.53;ReadPosRankSum=1.271;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:326,55:0.14:381
chrX	51076018	rs12846945	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,97:0.58:168
chrX	51239295	.	ATCCTCGAGGCAGCC	A	10559.73	.	AC=2;AF=1.00;AN=2;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chrX	51486659	rs974285	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	51637705	.	AT	A	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.797;QD=1.18;ReadPosRankSum=2.119;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:162,45:0.22:207
chrX	52825471	rs2806837	A	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	52825546	rs2806838	C	G	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chrX	52891584	rs5943751	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chrX	52895579	.	GGTGT	G,GGT	1184.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.876;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.99;MQRankSum=0.409;QD=23.69;ReadPosRankSum=1.166;SOR=0.754;set=HC	GT:AD:AF:DP	1/2:5,12,33:0.24,0.66:50
chrX	53222043	rs146836963	A	AC	1558.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.17;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	53225751	rs1536247	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	53228148	rs1977364	C	A	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chrX	53265835	rs2296541	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chrX	53271147	rs2274307	T	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chrX	53280421	rs7886988	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chrX	53349845	rs185512321	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chrX	53436232	rs1264008	G	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	53439940	.	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DP=243;set=Intersection	GT:AD:AF:DP	0/1:155,84:0.35:239
chrX	53449336	rs11462431	A	AG	380.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	53453201	rs5978132	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	53563589	rs426298	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	53601990	rs35473057	A	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.54;ReadPosRankSum=0.108;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	53629649	.	AAT	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.838;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chrX	53651424	rs155440	T	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	53652844	rs198501	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.18;QD=42.09;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	53652852	.	T	TGCCGGG	3670.73	.	AC=2;AF=1.00;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	53964588	rs41306892	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chrX	53966984	rs7886772	G	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.091;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chrX	53989230	rs41315088	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chrX	54011275	rs181282386	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:95,81:0.46:176
chrX	54019295	rs7061449	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	54028839	rs112731110	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chrX	54106618	rs2879887	C	T	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.478;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chrX	54107692	rs2516098	T	C	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.279;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chrX	54117740	rs2495797	C	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	54161859	rs4826523	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	54209387	rs2495783	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	54280277	rs3021284	A	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	54467065	rs7066917	C	T	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=2.194;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chrX	54481833	rs3830137	C	G	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-1.088;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:47,76:0.62:123
chrX	54483071	rs3833405	GT	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.858;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chrX	54492350	rs2269570	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chrX	54574644	rs5915137	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chrX	54781359	rs34779123	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chrX	54836505	rs1043034	A	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:101,79:0.44:180
chrX	54837277	rs12014977	G	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.126;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chrX	54837340	rs1043044	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chrX	54840013	rs763183	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-1.789;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:86,61:0.41:147
chrX	54953647	rs2273138	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chrX	54963860	rs742049	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chrX	54972150	rs35611718	T	TGC	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.806;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chrX	54972154	rs34428777	C	T	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-1.215;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chrX	54985201	rs7054008	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chrX	55027964	rs375803683	AT	A	899.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chrX	55035557	rs6612250	T	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chrX	55102926	rs149441640	G	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.33;QD=45.64;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	55102928	rs144784365	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.05;QD=47.51;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	55102934	rs113269012	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.97;QD=42.06;SOR=4.680;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	55103889	rs146503411	C	G	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:201,157:0.44:358
chrX	55116466	rs1845444	C	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	55117713	rs115472114	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-1.038;QD=11.03;ReadPosRankSum=-1.539;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chrX	55117822	rs149158843	C	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.76;MQRankSum=0.912;QD=9.24;ReadPosRankSum=-0.348;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chrX	55117850	rs55943350	T	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.87;QD=30.32;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	55117991	rs201800609	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-1.915;QD=6.53;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	55173732	rs11327722	TA	T	10466.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=35.97;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chrX	55246965	rs5914272	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chrX	55247030	rs5914273	C	G	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.108;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,78:0.55:141
chrX	55248320	rs5914274	G	A	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:112,147:0.57:259
chrX	55286887	rs3761559	G	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	55287031	rs3761560	T	G	4432.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:197,229:0.54:426
chrX	55289593	rs2148981	C	T	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-3.954;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:45,61:0.58:106
chrX	55289774	rs4826381	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chrX	55745615	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=-1.345;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chrX	55745616	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=-1.345;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chrX	56100912	rs2183847	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	56292210	rs67351130	C	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	56295438	.	AACAC	A,AAC	6370.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.298;QD=29.77;ReadPosRankSum=-0.632;SOR=0.952;set=HC	GT:AD:AF:DP	1/2:4,29,181:0.14,0.85:214
chrX	56295958	rs10542141	ATGTGTG	ATG,A	1161.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:29
chrX	57313357	rs2516023	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	57318907	rs4030473	T	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.527;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chrX	57405163	rs4826543	T	C	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chrX	57474943	rs1821118	A	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chrX	57475253	rs7059676	A	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chrX	57515140	rs5915052	T	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.048;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chrX	57618725	rs200468809	A	G	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.601;QD=7.88;ReadPosRankSum=-0.084;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chrX	57619183	rs2982251	T	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.10;ReadPosRankSum=0.829;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chrX	57619189	rs2982250	G	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=2.937;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chrX	57619192	rs3015275	C	A	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=2.718;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	57619648	rs1057328	G	T	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chrX	57934647	rs9699133	C	A	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:153,159:0.51:312
chrX	57936503	rs190335586	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.076;QD=6.93;ReadPosRankSum=0.377;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chrX	63410110	rs61730681	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chrX	63412690	rs34677493	A	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chrX	63445459	rs1414368	G	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:102,60:0.37:162
chrX	63568754	rs73627877	T	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chrX	63569727	rs5964768	C	T	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	63569979	rs5964769	A	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.736;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chrX	63615128	.	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,67:0.46:145
chrX	64137723	rs6653206	A	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chrX	64137890	rs73627900	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chrX	64139051	rs6524946	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:121,104:0.46:225
chrX	64139919	rs57348517	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	64717008	rs11461748	T	TA	1028.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	64751476	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=0.231;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	64754281	.	GGGCCTTATAGAAACTC	G	1724.73	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chrX	64771261	rs7065841	C	G	8773.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.81;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chrX	64953292	rs73629475	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chrX	64956611	rs5965006	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	64959577	rs5965007	A	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	65247409	rs9633155	T	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	65382685	rs5919015	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	65391038	rs144644060	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chrX	65392181	rs5964495	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chrX	65393658	rs5918591	A	G	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chrX	65408445	rs6624875	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chrX	65412148	rs73534029	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.574;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chrX	65415174	rs2206203	T	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	65420609	rs1264215	A	G	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	65427040	rs806607	T	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	65427124	rs809363	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chrX	65428098	rs141695362	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chrX	65478922	rs11433175	T	TA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.92;ReadPosRankSum=-0.632;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chrX	65486172	rs2054180	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chrX	65822607	rs1385698	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chrX	66765158	rs35885096	TGCAGCAGCA	T	1064.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	66765627	rs6152	G	A	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:220,211:0.49:431
chrX	66909423	rs1337075	C	T	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.168;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:66,80:0.55:146
chrX	67268376	rs2148827	C	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.442;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chrX	67331903	.	G	GCACA	387.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chrX	67331930	.	CAG	C	80.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=-0.364;QD=3.84;ReadPosRankSum=0.287;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chrX	67331932	rs5919521	G	C	468.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.822;QD=20.38;ReadPosRankSum=0.619;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chrX	67331934	rs5918812	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=-0.364;QD=4.27;ReadPosRankSum=0.641;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chrX	67412906	rs1191948	G	A	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	67414127	rs744217	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.82;ReadPosRankSum=2.058;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	67414227	rs744218	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	67414405	rs12012765	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.362;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chrX	67429834	rs57516402	CT	C	867.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.633;QD=13.77;ReadPosRankSum=-0.921;SOR=0.460;set=HC	GT:AD:AF:DP	1/1:7,56:0.89:63
chrX	67519005	rs5965537	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.496;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chrX	67932890	rs7052444	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,67:0.52:130
chrX	67936970	rs73531942	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chrX	67937221	rs61736986	C	T	5908.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:304,293:0.49:597
chrX	67938040	rs61743089	A	C	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=3.155;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chrX	67938156	rs61743078	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chrX	67939178	rs61996267	A	G	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:140,182:0.57:322
chrX	67940622	rs111553314	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chrX	68066095	.	A	AGT	513.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chrX	68424640	.	T	TTCTC	309.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.17;MQRankSum=-0.157;QD=38.72;ReadPosRankSum=1.534;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chrX	68424753	rs5937177	G	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.695;QD=7.05;ReadPosRankSum=-0.665;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chrX	68428256	rs150199745	T	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chrX	68725178	rs374286243	TCTG	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.859;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chrX	68725640	rs1171942	T	C	14834.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chrX	68749379	rs35383499	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chrX	68837767	rs370312004	TA	T	73.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.14;ReadPosRankSum=-0.327;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chrX	68890248	rs5936723	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	68890298	rs5980833	C	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	69080840	rs1203003	G	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chrX	69242789	rs7054245	A	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	69247672	rs11426919	C	CA	536.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.400;QD=18.51;ReadPosRankSum=-0.536;SOR=0.544;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chrX	69247896	rs10579679	CCT	C	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	69249513	rs62604271	G	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	69262423	rs2296767	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	69264422	rs73549755	C	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	69368853	rs650028	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	69397388	rs1199509	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:117,83:0.41:200
chrX	69397552	rs1199510	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.564;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chrX	69419565	rs12559976	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chrX	69459945	rs1152194	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chrX	69478775	rs3829709	A	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:120,91:0.43:211
chrX	69478942	rs1152187	T	G	9777.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chrX	69489088	rs140047519	G	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	69495869	rs5980910	C	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chrX	69496630	rs12388675	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chrX	69496709	rs12388365	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	69500852	rs35570675	T	TG	199.87	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chrX	69502478	rs1713746	C	T	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.023;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:72,85:0.54:157
chrX	69502478	.	CA	TG	551	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=26;MQ=60.0;NF=20;NR=21;PP=551;QD=14.7431188991;SC=ACATTTTTGCCACTCTTCTTG;SbPval=0.37;Source=Platypus;TC=69;TCF=37;TCR=32;TR=41;WE=69502487;WS=69502468;set=Platypus	GT:AD:AF:DP	0/1:28,41:0.59:69
chrX	69502479	rs1626469	A	G	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.48;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	69504324	.	G	A	387.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chrX	69504536	rs112251938	T	A	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:264,183:0.41:447
chrX	69504669	rs1199471	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chrX	69510335	rs1199470	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	69553688	rs145878681	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-0.108;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	69561780	rs1199457	T	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:87,36:0.29:123
chrX	69573639	rs1199429	C	T	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.650;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:54,74:0.58:128
chrX	69606492	rs10127080	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chrX	69626739	rs10482161	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chrX	69637865	rs5980934	G	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:126,129:0.51:255
chrX	69639698	rs1886892	G	T	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	69645372	rs5980938	G	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chrX	69647169	rs5980939	T	C	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:169,191:0.53:360
chrX	69649669	rs142847810	A	G	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:266,211:0.44:477
chrX	69652762	rs2296542	A	G	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-1.725;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:48,73:0.60:121
chrX	69652903	rs35940902	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chrX	69668463	rs2281868	A	G	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	69672655	rs12010766	T	C	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	69673464	rs28391150	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.010;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chrX	69673811	rs2274309	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	69713176	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.068;QD=0.60;ReadPosRankSum=1.098;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chrX	69718314	rs1886890	C	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	69718533	rs3215810	CTCAT	C	399.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	69749852	rs1536250	AT	GA	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chrX	69774517	rs4844240	A	T	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chrX	69844797	rs1325094	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chrX	69844799	rs5980983	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chrX	69890179	rs5980996	T	A	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.426;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:69,67:0.49:136
chrX	69898742	rs55853716	GA	G	157.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=15.77;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	69898784	.	GTCTCCC	G	37	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=3;HapScore=2;MGOF=15;MMLQ=27;MQ=56.24;NF=0;NR=4;PP=37;QD=11.75;SC=TCGGTCTATTGTCTCCCTCTC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=69898797;WS=69898774;set=Platypus	GT:AD:AF:DP	1/0:1,4:0.80:5
chrX	70146398	rs4360450	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	70146475	rs6525447	G	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chrX	70148927	rs5936605	T	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	70149360	rs5936606	G	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	70282696	rs34211894	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	70321631	rs5980742	T	G	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chrX	70322829	rs139916015	C	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chrX	70330596	rs11574625	T	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	70345593	rs2075790	C	T	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:212,183:0.46:395
chrX	70348317	rs5030617	G	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	70351838	rs6525471	C	T	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chrX	70352617	.	CCTCTTCTCTTCTCTT	C	521.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.09;MQRankSum=1.736;QD=29.00;ReadPosRankSum=1.163;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chrX	70356704	rs41298482	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chrX	70361273	rs7051453	C	T	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chrX	70361608	rs7056408	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	70368096	rs375241305	C	T	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:73,106:0.59:179
chrX	70373216	rs2233440	C	T	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	70383930	rs73634867	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chrX	70384267	rs7051693	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	70390007	rs112095862	G	GCA	384.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	70469182	rs2341539	G	A	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	70604041	rs28382166	T	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-1.836;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chrX	70613074	.	T	TTG	244.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chrX	70617443	rs5980760	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	70774955	rs199918298	C	CT	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	70774984	.	T	TTGTG	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.75;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chrX	70817918	rs372770394	A	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:77,97:0.56:174
chrX	70818008	.	C	T	795.77	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chrX	71349753	rs12397326	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:133,122:0.48:255
chrX	71349774	rs12393722	T	C	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chrX	71351443	rs62614085	A	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	71352187	rs7471996	C	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	71357093	rs6625949	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	71357160	rs6625950	G	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	71363415	rs6624597	C	T	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	71364479	rs11094247	A	C	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	71379702	rs7884806	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chrX	71379853	rs7880917	C	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	71380152	rs7881332	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	71401607	rs6525589	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.85;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	71401614	rs7058353	C	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=42.38;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	71406301	rs6525591	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chrX	71416722	rs144390339	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.75;ReadPosRankSum=-0.000;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chrX	71493691	rs7580	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:137,117:0.46:254
chrX	71495344	rs3827426	C	T	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.44;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	71495388	rs34563981	T	TCTA	10071.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:4,229:0.98:233
chrX	71495582	rs3747302	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chrX	71495869	rs3747303	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	71518799	rs5958780	G	T	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chrX	71521867	rs3012627	G	C	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	71522126	rs2984343	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chrX	71549512	rs660392	G	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	71788534	.	A	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.103;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chrX	71788870	rs3817725	T	C	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	71791912	rs11093377	C	T	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:141,164:0.54:305
chrX	71791975	rs3830710	TA	T	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.901;QD=1.45;ReadPosRankSum=-0.306;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:127,43:0.25:170
chrX	71792667	.	G	A	3060.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:129,147:0.53:276
chrX	71813191	rs200569284	C	CT	394.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.240;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.507;QD=11.97;ReadPosRankSum=0.126;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:5,28:0.85:33
chrX	71873204	rs188128546	A	T	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chrX	71876171	rs2272781	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chrX	71896110	rs376378016	CAT	C	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	71933512	.	TCACACA	T,TCACA	8903.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=1.528;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.298;QD=31.80;ReadPosRankSum=-2.135;SOR=0.403;set=HC	GT:AD:AF:DP	1/2:8,184,88:0.66,0.31:280
chrX	72223371	.	A	G	71.03	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	72299220	rs370279191	G	A	31.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=10.59;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	72666985	rs41303721	A	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chrX	72797180	rs2486782	A	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-1.447;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chrX	73042316	rs16992436	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chrX	73042607	rs41306111	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chrX	73043144	rs375977945	CT	C	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.532;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,24:0.80:30
chrX	73043297	rs138595829	G	A	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.604;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:58,62:0.52:120
chrX	73043817	rs1620574	T	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	73044970	rs41303715	T	A	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:110,99:0.47:209
chrX	73046557	rs16992443	G	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chrX	73062694	rs41310673	A	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chrX	73064935	rs45483698	C	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:97,77:0.44:174
chrX	73066891	rs6527	C	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chrX	73071141	rs41305409	C	G	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.002;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:137,125:0.48:262
chrX	73641569	rs6647476	T	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	73749319	rs5937843	T	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=1.738;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chrX	73811695	rs374955178	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.724;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=15.220;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-13.051;QD=1.24;ReadPosRankSum=-1.081;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:214,47:0.18:261
chrX	73811737	rs113198776	T	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-18.947;QD=0.86;ReadPosRankSum=7.096;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:470,46:0.09:516
chrX	73811739	rs201164156	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.378;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-19.230;QD=0.78;ReadPosRankSum=7.270;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:485,46:0.09:531
chrX	73811755	rs7883332	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.665;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-19.957;QD=0.16;ReadPosRankSum=5.006;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:575,46:0.07:621
chrX	73811761	.	G	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;ClippingRankSum=0.000;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-19.732;QD=0.06;ReadPosRankSum=3.931;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:619,46:0.07:665
chrX	73815587	.	A	AT	36.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chrX	74273444	rs142425608	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chrX	74280041	rs73502896	A	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.437;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:68,30:0.31:98
chrX	74280274	.	G	GT	31	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=9;HapScore=2;MGOF=3;MMLQ=19;MQ=60.0;NF=0;NR=3;PP=31;QD=15.0;SC=AAAAATGCCAGTTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=3;WE=74280282;WS=74280264;set=Platypus	GT:AD:AF:DP	0/1:6,3:0.33:9
chrX	74284996	rs1340990	T	C	2325.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.024;QD=18.91;ReadPosRankSum=-0.533;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:62,61:0.50:123
chrX	74284997	rs1340989	G	A	2325.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.033;QD=19.06;ReadPosRankSum=-0.017;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:62,60:0.49:122
chrX	74285119	rs112136748	ATCTC	A	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	74289344	rs5981317	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	74293866	rs181859578	A	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chrX	74332585	rs4148838	G	GT	125.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chrX	74334687	rs4148837	T	C	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:75,112:0.60:187
chrX	74375871	rs1039123	G	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chrX	74376420	rs5981325	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chrX	74494470	rs4892396	T	G	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:157,172:0.52:329
chrX	74670628	rs369193153	T	A	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-0.428;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:61,80:0.57:141
chrX	74725552	rs11093537	T	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chrX	74960992	rs61730494	C	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:160,132:0.45:292
chrX	74961908	rs61730497	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chrX	75393304	rs112628457	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	75395172	rs2301863	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	75648551	rs7066146	A	C	5497.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:303,278:0.48:581
chrX	75649340	rs7051260	G	C	7555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.88;ReadPosRankSum=1.498;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:388,377:0.49:765
chrX	76139959	rs232961	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chrX	76937963	rs3088074	G	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	76940534	rs35268552	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	77110822	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.972;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.610;QD=1.71;ReadPosRankSum=-2.033;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chrX	77225075	rs199995586	G	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;MQ=59.45;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chrX	77254265	.	G	GT	174.77	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	77264514	rs370905128	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=0.172;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chrX	77264626	.	G	C	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-1.962;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:57,79:0.58:136
chrX	77268502	rs2227291	G	C	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:148,122:0.45:270
chrX	77276413	rs113968994	C	A	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chrX	77296047	rs5913631	G	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	77298857	rs4826245	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	77365515	rs199531011	TAAAAC	T	748.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chrX	77381002	rs2073177	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=1.431;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chrX	77381014	rs2073178	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=0.840;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chrX	77394256	rs72168155	GAAAAT	G	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.526;QD=17.04;ReadPosRankSum=-0.719;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chrX	77528317	rs320995	G	A	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-1.688;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:66,74:0.53:140
chrX	77913569	rs4077512	G	A	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:72,89:0.55:161
chrX	78617053	rs1736662	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chrX	78617999	rs1751133	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.842;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chrX	78618050	rs1751134	A	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chrX	79277627	rs3048712	GGTTTT	G	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.297;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chrX	79283388	rs7877748	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chrX	79937084	rs3122406	G	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	79937617	rs59483641	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	79942599	rs72065200	GTA	G	161.37	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	79943569	rs3122407	T	C	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	79964914	.	G	GTA	2580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.05;ReadPosRankSum=0.637;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:65,78:0.55:143
chrX	79989018	rs4240018	C	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	79989094	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chrX	79999796	rs58601634	T	TCAC	352.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	80185266	rs5959744	G	T	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	82764040	rs5921978	A	G	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=44.41;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chrX	82764040	.	AGG	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=28;MMLQ=24;MQ=59.67;NF=74;NR=57;PP=2947;QD=20;SC=GCAGGTTCGAAGGCTTGCAGC;SbPval=0.56;Source=Platypus;TC=142;TCF=80;TCR=62;TR=131;WE=82764050;WS=82764028;set=Platypus	GT:AD:AF:DP	1/1:11,131:0.92:142
chrX	82764042	rs5921979	G	C	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=44.05;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chrX	83119939	rs5922000	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	83352970	rs10521366	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	83403148	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-2.207;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chrX	83403178	rs1539517	G	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.776;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chrX	83591879	rs77791258	T	C	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chrX	84189497	rs12013762	C	T	11823.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chrX	84189813	rs6623210	A	G	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chrX	84258773	rs73508182	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	84258843	rs3747422	C	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	84306380	rs200461363	A	AT	152.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chrX	84322067	rs3830105	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-0.837;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chrX	84348135	rs71889231	ATATT	A	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chrX	84358864	rs5922146	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	84363140	rs10126146	A	G	2779.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:73,73:0.50:146
chrX	84363164	rs66539671	T	C	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.416;QD=17.61;ReadPosRankSum=1.662;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:86,86:0.50:172
chrX	84520059	rs12560186	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chrX	84520105	rs12557399	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chrX	84534383	rs2227090	A	C	1786.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.06;ReadPosRankSum=-1.476;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:4,77:0.95:81
chrX	84534482	rs363789	CATT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=1.184;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chrX	84558489	rs363754	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.513;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chrX	84559301	rs150743282	G	A	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.150;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:134,133:0.50:267
chrX	84563135	rs363774	T	A	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chrX	84569256	rs17004160	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.816;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	85282415	rs1015148	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	85994683	rs6623765	G	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	85997567	rs139706920	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.48;ReadPosRankSum=1.661;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chrX	85997573	rs149375760	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.32;ReadPosRankSum=1.966;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chrX	86071151	rs12837683	C	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,24:0.36:67
chrX	86869103	rs5924064	A	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,44:0.59:74
chrX	86869348	rs5922464	C	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.18;ReadPosRankSum=-0.728;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chrX	86872866	rs5924069	G	T	55.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chrX	86877348	rs2273050	G	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:109,101:0.48:210
chrX	86887244	rs222084	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chrX	88008423	rs5940915	A	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	88008713	rs78677921	T	C	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:174,120:0.41:294
chrX	88009322	rs5984613	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	89177673	rs2290380	G	A	7778.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chrX	89177913	.	ATCTT	A	121.73	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chrX	91066365	rs200537802	G	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	91071138	rs111473006	A	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.243;QD=2.86;ReadPosRankSum=-1.047;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chrX	91147703	rs35310035	A	AT	352.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=0.574;QD=4.15;ReadPosRankSum=2.419;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chrX	91675554	rs145851025	A	T	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	92927634	rs1045686	G	C	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chrX	95990839	rs20386	A	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-3.397;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chrX	95990883	rs5949989	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.983;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chrX	96013128	rs2297827	CC	TT	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chrX	96018052	rs11339405	GT	G	831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.483;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,54:0.57:94
chrX	96018162	rs73547719	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.591;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chrX	96048757	rs3135400	C	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	96139406	rs2642219	G	A	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chrX	96139459	rs2642218	T	C	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	96196880	.	A	G	23	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=0.9998;HP=2;HapScore=2;MGOF=2;MMLQ=21;MQ=60.0;NF=1;NR=1;PP=23;QD=28.8856062736;SC=TTGTCCTAAGAAAGTGTAGTG;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=96196888;WS=96196870;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	96197175	rs5920973	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	96204101	rs5920613	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chrX	96213120	rs20389	G	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chrX	96502650	rs1409192	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chrX	96602984	rs143635434	C	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chrX	96724560	rs142403975	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.178;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	99849017	rs2073162	G	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:74,83:0.53:157
chrX	99849051	rs2073163	T	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chrX	99888564	rs2234091	G	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chrX	99930892	rs4828041	T	C	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.45;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	99936147	rs4828043	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chrX	99941705	rs2022039	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	99945176	rs57753438	A	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chrX	99955925	rs16983588	T	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.366;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chrX	99956157	rs5967170	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chrX	100075514	rs73559565	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chrX	100075741	rs2859166	T	G	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	100075747	rs2859167	T	C	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	100077193	rs2859168	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chrX	100078539	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-0.000;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	100083015	rs141539257	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chrX	100087557	rs5921665	A	G	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	100098355	rs148448908	TAAG	T	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chrX	100105140	rs35404864	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chrX	100105418	rs5921669	A	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chrX	100170077	rs199633552	TAAAAAC	T	1213.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chrX	100212525	rs6616208	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chrX	100242305	rs5921702	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chrX	100243459	rs3934462	G	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,58:0.48:121
chrX	100245606	rs6523438	A	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chrX	100265552	rs5921705	T	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chrX	100265713	rs7885599	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chrX	100268595	.	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-2.100;QD=4.72;ReadPosRankSum=0.619;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chrX	100268601	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-2.100;QD=4.72;ReadPosRankSum=1.068;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chrX	100275630	rs200657512	AGTTT	A	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=9.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=3.206;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chrX	100276374	rs375679250	T	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.356;QD=12.84;ReadPosRankSum=-0.805;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chrX	100296185	.	T	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-1.181;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chrX	100357417	rs59141949	CT	C	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	100375304	rs146617497	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.931;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chrX	100375865	rs368295326	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.554;QD=1.50;ReadPosRankSum=-0.335;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chrX	100383616	rs112057339	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chrX	100383840	rs7884828	A	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chrX	100395547	rs2273379	T	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	100400023	rs2295376	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	100401084	rs140308681	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chrX	100416757	rs112993398	A	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	100490933	rs7066252	G	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chrX	100492493	.	C	A	589.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chrX	100503048	rs374702847	T	A	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-1.001;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chrX	100505617	rs3747280	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chrX	100511098	rs3213505	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chrX	100514986	rs5967281	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chrX	100531204	rs3761514	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chrX	100532499	.	T	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.568;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chrX	100532621	rs35899692	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chrX	100532924	rs3788765	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chrX	100532985	rs3788764	T	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:103,78:0.43:181
chrX	100536678	rs201673133	C	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chrX	100537154	rs5991927	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chrX	100547933	rs5951328	A	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	100603477	rs3027649	G	A	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.940;QD=9.30;ReadPosRankSum=1.028;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:86,74:0.46:160
chrX	100608191	rs1135363	G	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	100609547	rs2071223	G	A	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	100611285	rs3747288	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chrX	100615023	rs2746110	T	G	819.78	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chrX	100616989	rs3027641	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chrX	100617372	rs2071222	T	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	100645467	rs5951308	T	C	10791.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chrX	100653109	rs2071228	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	100653950	rs2071397	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chrX	100656518	rs3027588	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chrX	100656873	rs5903184	AGGCTG	A	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;MQ=61.53;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	100666836	rs3027575	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chrX	100666907	rs372055912	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.099;QD=0.78;ReadPosRankSum=-0.364;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:137,43:0.24:180
chrX	100743037	rs963618	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	100743826	rs5951332	A	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:63,48:0.43:111
chrX	100745825	rs5951333	T	C	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chrX	100746680	rs7050935	G	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chrX	100747161	.	T	A	384.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chrX	100747694	rs61736018	G	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.902;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chrX	100748078	rs5991911	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	100749127	rs5951336	A	G	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=25.50;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chrX	100808213	.	C	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.501;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:123,80:0.39:203
chrX	100910916	rs73568864	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chrX	100911066	rs3850315	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	101090953	rs6621219	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chrX	101091164	rs6621220	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:201,168:0.46:369
chrX	101096219	rs201887839	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.580;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.98;MQRankSum=1.317;QD=15.17;ReadPosRankSum=-0.967;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chrX	101096665	.	T	C	4560.77	.	AC=1;AF=0.500;AN=2;DP=448;set=Intersection	GT:AD:AF:DP	0/1:202,229:0.53:431
chrX	101138792	rs5944882	T	C	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chrX	101141776	rs67953349	AC	A	104	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	101141793	rs5944778	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	101395780	rs11408120	T	TG	5564.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chrX	101439904	rs146399386	C	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:144,109:0.43:253
chrX	101587709	.	CTCTCTCT	C	165.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=27.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	101623586	.	ATGG	A	4711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=1.421;QD=8.34;ReadPosRankSum=1.744;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:292,273:0.48:565
chrX	102174240	rs1014218	T	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-2.705;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chrX	102174289	rs34889669	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=31.13;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	102174314	.	CCT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=-2.260;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	102192301	rs34191945	C	T	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chrX	102192315	rs61745030	G	C	4014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.625;QD=20.80;ReadPosRankSum=-0.646;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:92,101:0.52:193
chrX	102192321	rs61745027	A	G	4117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.670;QD=21.23;ReadPosRankSum=-0.986;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:91,103:0.53:194
chrX	102192328	rs61745026	A	G	3989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=1.684;QD=21.68;ReadPosRankSum=-0.859;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:86,98:0.53:184
chrX	102192330	rs61745025	T	C	3824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.672;QD=21.13;ReadPosRankSum=-0.420;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:85,96:0.53:181
chrX	102320833	rs73523979	C	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=5.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.280;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:104,69:0.40:173
chrX	102332171	rs34811257	CT	C	696.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.546;QD=11.81;ReadPosRankSum=1.114;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:9,50:0.85:59
chrX	102334392	rs57379816	C	T	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:229,225:0.50:454
chrX	102338466	rs7065467	G	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:84,57:0.40:141
chrX	102339606	rs1029305	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	102471531	rs1064784	G	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	102564583	rs7557	A	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	102755250	rs79820963	G	A	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=49.08;MQRankSum=-4.913;QD=7.15;ReadPosRankSum=0.830;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:105,76:0.42:181
chrX	102831217	rs221946	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	102832018	rs73520402	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chrX	102840421	rs221931	G	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	102842041	rs11010	T	C	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,89:0.51:176
chrX	102864251	rs12009847	C	G	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,108:0.51:210
chrX	102864442	.	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.246;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-9.203;QD=2.08;ReadPosRankSum=3.301;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chrX	102864720	rs147820612	G	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chrX	102978682	rs113337584	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	102979042	rs61749967	C	T	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:160,128:0.44:288
chrX	102979184	rs16984014	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chrX	102979296	rs6652386	G	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chrX	102979486	rs4907817	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	102979868	rs61730416	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=1.322;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chrX	102979992	rs2239814	A	G	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	103031700	rs11371342	A	AG	317.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	103036412	rs521895	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	103267865	rs553509	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:49,67:0.58:116
chrX	103274226	rs494006	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chrX	103295543	rs3213517	A	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:76,57:0.43:133
chrX	103350030	rs58063985	T	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	103359334	rs61745269	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:97,66:0.40:163
chrX	103432624	rs7052087	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chrX	103495007	rs78191648	G	C	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.063;QD=9.98;ReadPosRankSum=1.483;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:46,50:0.52:96
chrX	103495171	.	G	C	44	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=24;MQ=57.02;NF=4;NR=0;PP=44;QD=19.6928031368;SC=GGGTGGCACAGGCGCCATGGG;SbPval=1.0;Source=Platypus;TC=11;TCF=9;TCR=2;TR=4;WE=103495179;WS=103495161;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chrX	103498748	rs183896402	G	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chrX	103499611	rs116499044	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chrX	104464276	rs375033944	CA	C	23203.73	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chrX	104464281	rs367644904	TC	T	23203.73	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chrX	104464336	rs190120031	G	A	4060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.246;QD=11.70;ReadPosRankSum=0.035;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:152,195:0.56:347
chrX	104478465	rs182129432	C	T	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chrX	104961266	rs186386002	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chrX	104984735	rs375732224	T	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chrX	105011414	rs61746121	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:144,111:0.44:255
chrX	105132389	rs61998202	C	T	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-0.565;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:75,81:0.52:156
chrX	105137686	rs7890796	A	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chrX	105139356	.	C	CAGAAAGAA	1497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=0.246;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:24,31:0.56:55
chrX	105152282	rs209373	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	105153001	rs209372	A	G	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chrX	105165850	rs209078	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chrX	105168819	rs12395531	C	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,57:0.44:131
chrX	105179132	rs209095	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	105192769	rs113490419	CT	C	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.319;QD=3.88;ReadPosRankSum=-0.490;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chrX	105278361	rs1804495	C	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chrX	105449446	rs186011816	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,73:0.54:134
chrX	105891683	.	T	C	344.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chrX	105937370	rs150460553	A	G	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:137,157:0.53:294
chrX	106061924	rs6523896	G	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:126,126:0.50:252
chrX	106066391	rs6523898	A	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	106070625	rs7057400	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chrX	106083245	rs73531167	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chrX	106083331	rs73531168	A	G	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:85,67:0.44:152
chrX	106083436	rs41304488	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:60,44:0.42:104
chrX	106092252	.	C	T	154.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chrX	106092450	.	ATT	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.64;ReadPosRankSum=0.389;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chrX	106097460	rs7886676	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chrX	106109306	rs148569277	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	106113889	rs7879419	T	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=0.839;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chrX	106146349	rs5962774	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chrX	106184601	rs202113574	TGAGA	T,TGAGAGAGAGAGA	430.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-1.191;SOR=0.776;set=HC	GT:AD:AF:DP	1/2:2,8,7:0.47,0.41:17
chrX	106186534	rs73533040	A	G	169.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.44;ReadPosRankSum=0.660;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chrX	106200202	rs6622126	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:78,60:0.43:138
chrX	106205231	rs73533054	G	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chrX	106224783	rs111335111	GA	G	187.25	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chrX	106224837	rs143449939	C	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	106312352	rs191113050	A	G	151.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.86;ReadPosRankSum=-0.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	106313508	rs6622143	G	A	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	106359063	rs12394204	C	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chrX	106360028	rs150637826	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.266;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chrX	106360086	rs6523920	C	A	113.18	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chrX	106361914	rs7885219	C	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chrX	106362078	rs3216052	CT	C	1307.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	106396402	rs1298577	A	G	9934.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chrX	106396455	rs1285590	A	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	106462267	rs1954365	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	106841056	.	TGAG	T	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.108;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:186,23:0.11:209
chrX	106846552	rs141655380	G	A	7261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.491;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.065;QD=9.35;ReadPosRankSum=0.905;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:412,365:0.47:777
chrX	106871882	.	C	T	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=1.322;QD=5.91;ReadPosRankSum=0.934;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:78,44:0.36:122
chrX	107037429	rs2295374	G	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chrX	107037795	rs5962885	C	A	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	107037826	rs5962886	G	A	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chrX	107167513	.	GT	G	321.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chrX	107167841	rs7879884	G	C	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chrX	107224660	rs41300872	C	T	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:238,195:0.45:433
chrX	107310389	rs699668	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chrX	107328436	rs807178	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	107372133	rs73535860	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.378;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chrX	107393330	rs3215492	T	TG	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chrX	107396365	rs1883411	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-2.871;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chrX	107400160	rs59121927	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chrX	107403913	rs73535883	T	A	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chrX	107403951	rs183966493	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chrX	107415595	.	G	A	36	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5011;HP=26;HapScore=2;MGOF=25;MMLQ=21;MQ=53.56;NF=1;NR=4;PP=36;QD=14.1542425094;SC=GCCTAAAAAAGAAAAAAAAAA;SbPval=0.14;Source=Platypus;TC=16;TCF=9;TCR=7;TR=5;WE=107415603;WS=107415585;set=Platypus	GT:AD:AF:DP	1/0:11,5:0.31:16
chrX	107415825	rs2881142	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chrX	107417730	rs5973851	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:149,83:0.36:232
chrX	107418906	rs4623610	A	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	107420287	rs2295915	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chrX	107422020	rs139372880	C	T	3950.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:148,200:0.57:348
chrX	107423674	rs71926819	TAC	T	1296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.890;QD=14.41;ReadPosRankSum=-1.967;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:36,54:0.60:90
chrX	107439908	.	TC	T	480.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chrX	107455014	rs1266736	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=1.248;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chrX	107626940	.	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	107814732	rs73526282	G	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.493;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chrX	107824005	rs2294543	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chrX	107824048	rs10635053	T	TCTTA	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chrX	107827780	rs58190747	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	107829907	rs2272945	G	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.692;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chrX	107834453	rs2272946	T	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.05;ReadPosRankSum=0.860;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	107844780	.	A	G	45	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=1;HapScore=2;MGOF=28;MMLQ=19;MQ=60.0;NF=1;NR=4;PP=45;QD=15.9542425094;SC=TTTTTTTGACAGAGTTTCGCT;SbPval=0.44;Source=Platypus;TC=9;TCF=1;TCR=8;TR=5;WE=107844788;WS=107844770;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chrX	107845128	rs7884085	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.817;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chrX	107850076	rs3747408	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:63,109:0.63:172
chrX	107858304	rs2179674	T	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chrX	107858399	rs2064379	T	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	107869646	rs3747409	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chrX	107909784	rs2273051	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,44:0.45:98
chrX	107909866	rs28465565	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chrX	107918007	rs200814705	CT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.461;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:36,22:0.38:58
chrX	107929337	rs61746140	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chrX	107976940	rs1801164	G	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chrX	107979512	rs2073114	C	T	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.57;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	107979512	.	CGCC	TGCC,TGCT	314	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=24;MQ=60.0;NF=18,9;NR=29,14;PP=231,314;QD=5.65470664994;SC=CTGCCGCTGCCGCCGCTGCTG;SbPval=0.54;Source=Platypus;TC=47;TCF=18;TCR=29;TR=47,23;WE=107979523;WS=107979502;set=Platypus	GT:AF:DP	0/1:1.00:47
chrX	107979515	rs2073115	C	T	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-1.872;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:43,50:0.54:93
chrX	108625459	rs138470262	A	G	2755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.534;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.535;QD=16.80;ReadPosRankSum=1.128;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:88,76:0.46:164
chrX	108625464	rs201092444	AT	A	2730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.545;QD=17.97;ReadPosRankSum=1.884;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:82,70:0.46:152
chrX	108625486	rs143090855	C	T	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=3.238;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:51,50:0.50:101
chrX	108636057	.	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.628;QD=1.00;ReadPosRankSum=-1.243;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chrX	108638445	rs2076361	A	G	77.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	108696622	rs113450292	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.90;ReadPosRankSum=2.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chrX	108696627	rs112459245	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.57;ReadPosRankSum=-1.158;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chrX	108696659	rs73639127	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chrX	108708516	rs502209	C	T	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	108779048	rs73639132	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chrX	108780264	rs73639133	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,51:0.52:99
chrX	108904729	rs839408	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	108924380	rs201395146	G	GA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=2.277;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chrX	108925991	rs144600261	T	C	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:110,138:0.56:248
chrX	109387928	rs946820	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	109416688	rs34813944	AT	A	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.491;QD=1.67;ReadPosRankSum=-0.817;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chrX	109419165	rs2795995	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	109507669	.	G	GT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.021;QD=1.13;ReadPosRankSum=-0.820;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chrX	109694685	rs2073787	T	A	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	109931799	rs5943052	A	G	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	109931856	rs5943053	T	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chrX	109963054	rs377043908	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chrX	110416182	rs372455411	TTC	T	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.228;QD=2.46;ReadPosRankSum=-0.940;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:146,32:0.18:178
chrX	110421441	rs10521534	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	110435569	rs35848728	A	AT	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	110459827	rs10521535	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chrX	110459881	rs141766450	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chrX	110463502	rs16986440	C	A	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	110490491	rs2404703	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	110494017	rs926412	T	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.89;ReadPosRankSum=0.467;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	110494528	.	G	GA	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.586;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chrX	110494841	rs12013711	C	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	110495510	rs17879046	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chrX	110496391	rs17882737	G	A	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:142,132:0.48:274
chrX	110497414	rs926414	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chrX	110954881	rs5985635	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.690;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chrX	110963365	rs7063657	A	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.178;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chrX	110964944	rs5985638	A	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chrX	110966130	rs189770099	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-1.288;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chrX	110968350	rs58580842	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chrX	111156163	rs41311741	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=-1.146;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chrX	111195785	rs111687165	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-0.727;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chrX	111698036	rs6568050	T	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	111698613	rs7053563	T	C	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chrX	112023949	rs146184857	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chrX	113961410	rs2248440	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chrX	113965735	rs6318	G	C	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chrX	114082535	rs5946005	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	114384343	rs2806269	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.799;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-1.143;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chrX	114400318	rs4361922	T	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chrX	114425181	.	A	AGAGGCCGCTCGCCCAACGCCCACAGCG	4714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=61.99;MQRankSum=9.995;QD=17.72;ReadPosRankSum=-0.325;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:156,110:0.41:266
chrX	114426171	rs5946294	C	T	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:208,218:0.51:426
chrX	114426342	rs182038264	G	A	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:289,279:0.49:568
chrX	114844535	rs114186394	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.557;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chrX	114856479	rs115460141	A	G	298.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=-1.709;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chrX	114856508	rs144675308	C	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=-0.591;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chrX	114879399	rs2108099	T	C	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.295;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:195,134:0.41:329
chrX	114880423	rs871774	T	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chrX	114880523	rs871773	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chrX	114880937	rs2301951	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chrX	115304276	rs5191	G	A	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:133,151:0.53:284
chrX	115584374	rs10217924	G	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.638;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chrX	117032973	rs6645983	C	G	2885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.691;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:237,156:0.40:393
chrX	117053499	rs6645994	C	T	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	117106630	rs6646017	A	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.235;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:51,36:0.41:87
chrX	117107259	rs202104844	AAAC	A	1641.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,45:0.42:108
chrX	117107363	rs6646018	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:141,110:0.44:251
chrX	117117398	rs368634632	GA	G	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.880;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:27,28:0.51:55
chrX	117162356	rs201456662	T	TA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.755;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chrX	117162593	rs59515565	T	C	101.88	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chrX	117527945	rs10127330	C	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	117527965	rs10127331	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	117527970	rs34108225	AT	A	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	117528142	rs6603401	C	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chrX	117531099	rs5956969	C	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	117532516	rs6646189	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	117544746	rs5956977	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	117570954	rs10590176	TCTG	T	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	117577774	rs5957001	C	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	117577782	rs5957002	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	117677349	rs1294781	G	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	117677642	rs1294780	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	117679234	rs55694052	CT	C	568.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.464;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.245;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chrX	117680172	.	G	GC	69	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=0.9998;HP=1;HapScore=2;MGOF=97;MMLQ=17;MQ=63.82;NF=1;NR=0;PP=69;QD=112.0;SC=AAGAGCCCTAGCAAAAAAAAA;SbPval=0.34;Source=Platypus;TC=3;TCF=1;TCR=2;TR=1;WE=117680180;WS=117680162;set=Platypus	GT:AD:AF:DP	1/1:2,1:0.33:3
chrX	117680174	rs11796562	A	C	33.10	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.90;QD=8.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	117718669	rs1781091	TT	AA	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=1.723;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chrX	117742356	rs5910394	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chrX	117744184	rs4825597	G	C	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.238;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:40,61:0.60:101
chrX	117752743	rs200001862	A	AT	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chrX	117758717	.	CTT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=1.760;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	117770466	rs111253120	G	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	117810831	rs5957040	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.05;ReadPosRankSum=1.184;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chrX	117817266	rs4372173	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	117861512	.	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=1.016;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chrX	117874898	rs2246663	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	117904228	rs187946225	A	G	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:194,158:0.45:352
chrX	117908115	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.538;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chrX	118108729	rs138448277	C	T	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:127,161:0.56:288
chrX	118143043	rs2168379	A	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	118147233	rs2290514	G	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-1.222;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chrX	118148229	rs2278954	A	G	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chrX	118207674	rs187129348	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chrX	118207944	rs73592445	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,54:0.56:96
chrX	118215511	rs7055713	C	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	118219347	rs2305570	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chrX	118230468	rs35613130	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chrX	118230580	rs111299418	A	G	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chrX	118230595	rs897493	T	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chrX	118250710	rs5957111	A	C	148.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	118281538	rs5910522	C	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chrX	118281635	rs11405916	G	GC	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.05;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	118376992	rs2499040	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chrX	118514072	rs217941	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	118533299	rs217975	A	G	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	118533366	rs217976	G	A	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	118544448	rs16274	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	118560403	rs217997	G	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	118585943	rs425331	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chrX	118587003	rs3810755	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chrX	118602152	rs405050	G	A	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:120,107:0.47:227
chrX	118602222	rs62599439	G	C	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chrX	118603706	rs113356560	A	AG	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-9.739;QD=1.25;ReadPosRankSum=-0.963;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:115,13:0.10:128
chrX	118603713	rs201182381	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-9.619;QD=1.28;ReadPosRankSum=0.562;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:112,13:0.10:125
chrX	118603729	rs143413528	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-8.085;QD=2.53;ReadPosRankSum=2.502;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:94,14:0.13:108
chrX	118603742	rs148294496	A	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-7.656;QD=3.10;ReadPosRankSum=3.743;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chrX	118603747	rs141428607	A	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-7.477;QD=3.26;ReadPosRankSum=3.883;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:80,14:0.15:94
chrX	118603773	rs148920941	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-8.047;QD=1.29;ReadPosRankSum=1.570;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chrX	118603844	rs371749	T	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:5,91:0.95:96
chrX	118604436	rs12390	T	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=25.10;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	118604553	rs3216181	T	TA	1602.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	118605012	rs80323990	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-4.142;QD=1.10;ReadPosRankSum=1.972;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:43,5:0.10:48
chrX	118605017	rs77294853	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-3.893;QD=1.51;ReadPosRankSum=1.944;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chrX	118605023	rs74343587	T	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-3.277;QD=2.77;ReadPosRankSum=1.143;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chrX	118678364	rs5910611	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chrX	118699320	rs5910616	A	G	15064.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:2,587:1.00:589
chrX	118709567	rs56726502	T	TAA	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chrX	118754064	rs59071899	CAAA	CAA,C	245.27	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	0/1:0.81:26
chrX	118758117	rs112780297	T	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.38;ReadPosRankSum=0.760;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chrX	118758120	.	GTT	G	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.03;ReadPosRankSum=0.271;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chrX	118763406	rs3088376	C	T	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-1.196;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,68:0.60:113
chrX	118809732	rs67811876	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	118820389	rs28687759	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	118827317	rs17261138	A	C	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	118829479	rs2873171	G	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chrX	118892888	rs2782222	G	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	118893054	rs2782223	C	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	118893137	rs2782224	T	C	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chrX	118893413	rs2782225	T	C	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	118920809	rs7885997	C	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	118921202	rs57895047	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chrX	118975782	rs2496208	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chrX	118977027	rs2496209	A	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-0.189;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:46,29:0.39:75
chrX	118977036	rs2496210	A	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.000;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:55,34:0.38:89
chrX	118977331	rs2496212	C	T	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	118977331	.	CA	TG	118	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=118;QD=57.1559582874;SC=ACATTATCTACAATACTGATT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=118977340;WS=118977321;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	118977332	rs2496213	A	G	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	118985422	rs16995673	A	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chrX	118985598	rs2428212	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	119005587	rs1800823	T	C	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:112,138:0.55:250
chrX	119007229	rs1800824	T	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-2.680;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:32,38:0.54:70
chrX	119064252	rs16995689	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	119065893	rs194302	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	119070327	rs10577974	CGAT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.554;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chrX	119070567	rs194308	A	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chrX	119249303	rs142256194	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chrX	119387148	rs16980173	T	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chrX	119421053	rs12845457	G	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	119421163	.	T	TACACACACAC	244.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=48.95;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	119445015	rs3810749	C	T	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	119496235	rs189077367	A	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chrX	119510144	rs3213723	C	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	119510200	rs200143417	T	TA	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,61:0.95:64
chrX	119760031	rs16995907	T	C	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	119972052	.	CT	C	132.73	.	AC=1;AF=0.500;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=11.06;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chrX	120008979	rs871733	T	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	120181641	rs191769566	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chrX	120504923	rs5956321	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=2.119;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	120505069	rs7885213	G	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-1.078;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chrX	121376242	rs1970367	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	122250996	rs6648942	G	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:178,137:0.43:315
chrX	122251314	rs61740554	C	T	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chrX	122251719	rs6648485	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chrX	122318386	rs58044961	A	AG	4882.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	122319917	rs2269551	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	122336448	rs2285127	T	C	166.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	122336600	rs11452643	T	TG	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	122696014	rs72631817	A	G	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:217,160:0.42:377
chrX	122805421	rs2105889	C	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	123034511	rs5956583	A	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.256;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:63,54:0.46:117
chrX	123199782	rs10217943	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chrX	123498120	rs12393085	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	123498355	rs55941348	C	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	123498362	rs60637596	GT	G	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	123498379	rs57958188	C	G	225.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	123504284	rs73634514	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chrX	123538802	rs34194370	T	TAAAC	2340.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chrX	123587110	rs2223416	C	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	123615545	.	G	GTATATATATA,GTATATATATATA	196.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=20;set=Intersection	GT:AF:DP	0/1:0.42:19
chrX	123697791	rs5956664	T	C	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chrX	123775907	rs60027201	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chrX	123778925	rs5958546	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:54,77:0.59:131
chrX	123779216	rs145672427	T	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chrX	123780465	rs138968308	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chrX	123780500	rs142124136	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chrX	124029760	rs142641779	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chrX	124456213	.	G	GACAGCA	3284.73	.	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.72;QD=46.92;SOR=2.173;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	124456694	rs3135238	T	C	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	125953932	rs5931715	A	G	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	125955199	rs4289953	T	C	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:72,167:0.70:239
chrX	125955644	rs2269776	A	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	128625869	rs2274093	T	C	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.265;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:119,38:0.24:157
chrX	128630976	rs201352836	GCA	G	477.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.560;QD=21.72;ReadPosRankSum=-0.861;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chrX	128633627	rs6634747	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	128674631	.	T	TG	310.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chrX	128694467	rs3761583	A	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=2.011;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chrX	128710076	rs4021899	G	GTCC	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chrX	128722284	rs1159042	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:124,38:0.23:162
chrX	128725857	rs6529391	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.958;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chrX	128781864	rs3115758	C	A	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.833;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:128,48:0.27:176
chrX	128782536	rs5977126	G	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.985;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:187,65:0.26:252
chrX	128788390	rs5977130	T	C	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	128880614	rs3747343	T	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.106;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:144,34:0.19:178
chrX	128884332	rs1737130	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.495;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chrX	128884387	rs150153073	C	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:47,133:0.74:180
chrX	128885571	.	A	AAAGG	518.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=-0.414;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chrX	128927482	rs114378847	C	G	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chrX	128940241	rs1053440	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chrX	128945039	rs112304524	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:11,96:0.90:107
chrX	128946818	rs7054036	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chrX	128946876	rs7066539	G	T	599.94	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chrX	128957640	rs2275605	TG	CA	9537.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;JOINED;set=Intersection	GT:AD:AF:DP	0/1:94,238:0.72:332
chrX	128963223	.	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.987;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chrX	129041899	.	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.694;QD=3.44;ReadPosRankSum=-0.898;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chrX	129045656	rs2273021	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-1.627;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chrX	129058737	rs2281277	A	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.535;QD=2.60;ReadPosRankSum=-0.698;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:343,100:0.23:443
chrX	129060424	rs144332058	G	A	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,58:0.72:80
chrX	129147079	rs4830173	T	C	14973.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chrX	129148407	rs113450274	T	C	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=1078;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.959;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:815,242:0.23:1057
chrX	129149937	rs7061871	C	T	5835.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:89,254:0.74:343
chrX	129150144	rs7062200	C	G	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	129150254	rs112328950	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chrX	129156849	rs34410420	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.402;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:408,90:0.18:498
chrX	129158827	rs61494890	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chrX	129184876	rs7060657	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	129185739	rs13440486	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.377;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chrX	129189727	rs7880161	T	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chrX	129203710	rs3818328	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	129215417	rs73633969	A	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.605;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:76,30:0.28:106
chrX	129269980	rs209998	G	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:41,125:0.75:166
chrX	129271132	rs12007545	T	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:83,27:0.25:110
chrX	129272441	rs12010190	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chrX	129272520	rs12014323	C	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=5.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.113;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:212,66:0.24:278
chrX	129272617	rs12014115	G	A	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-2.270;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:609,157:0.20:766
chrX	129274423	rs142430426	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:122,49:0.29:171
chrX	129283520	rs1139851	A	G	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:66,203:0.75:269
chrX	129290699	rs189994	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chrX	129349295	rs209238	T	G	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:41,126:0.75:167
chrX	129354240	rs1160681	C	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	129354254	rs3081123	TAA	T	1151.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chrX	129480467	rs372098810	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.416;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chrX	129519453	rs187355025	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.362;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:116,27:0.19:143
chrX	129630073	rs2232313	C	A	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=0.746;QD=14.56;ReadPosRankSum=0.898;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:65,124:0.66:189
chrX	129751476	.	TTTTCTTTCTTTC	T	656.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=31.27;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	130218451	rs9306826	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chrX	130219723	rs10521763	T	C	4382.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:70,212:0.75:282
chrX	130222454	rs3859990	T	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	130408745	rs6529473	G	A	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:84,168:0.67:252
chrX	130409884	rs55936630	A	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,14:0.22:64
chrX	130412178	rs4524963	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chrX	130412786	.	C	T	924.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chrX	130415180	rs11431751	C	CA	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.655;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:125,35:0.22:160
chrX	130415818	rs1128617	T	C	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:90,299:0.77:389
chrX	130416958	rs5932877	C	T	5908.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:120,275:0.70:395
chrX	130420006	rs5930458	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	130420415	rs4495600	T	C	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chrX	130423543	rs6637830	G	C	7850.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:117,346:0.75:463
chrX	130678467	rs499030	A	G	15063.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chrX	130678844	rs655415	A	C	13294.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chrX	131189505	rs5933055	C	T	3578.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:74,172:0.70:246
chrX	131203438	.	CATATATATATATATAT	C,CAT	708.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=27;set=Intersection	GT:AF:DP	1/1:0.95:22
chrX	131212512	rs5977623	A	G	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chrX	131212944	rs7051368	A	G	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:35,115:0.77:150
chrX	131231257	rs2064650	G	A	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:75,208:0.73:283
chrX	131516423	rs5933151	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	131518737	rs3736748	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	131547472	rs146523239	A	G	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.587;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:404,125:0.24:529
chrX	131573664	rs141219223	T	C	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.119;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:124,30:0.19:154
chrX	131803352	rs10550199	ATC	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=-2.429;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	132351002	rs368919287	TAA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.713;QD=2.11;ReadPosRankSum=0.753;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chrX	132352230	rs28455963	C	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.146;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:144,37:0.20:181
chrX	132352378	.	GGTGCGTGGCGTAAC	G	368	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5081;HP=1;HapScore=2;MGOF=11;MMLQ=19;MQ=60.79;NF=0;NR=6;PP=368;QD=72.2121559382;SC=GCTGCCGTGAGGTGCGTGGCG;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=6;WE=132352399;WS=132352368;set=Platypus	GT:AD:AF:DP	1/0:17,6:0.26:23
chrX	132437337	rs1048369	G	A	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:35,113:0.76:148
chrX	132438687	rs147626572	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chrX	132438872	rs1129980	C	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chrX	132458578	rs66507215	CA	C	188.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.58;ReadPosRankSum=0.114;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chrX	132549013	rs2073288	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chrX	132795906	rs147067769	T	C	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:59,194:0.77:253
chrX	132838466	rs7052290	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-1.803;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	132887546	rs78696048	T	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.307;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:339,111:0.25:450
chrX	133379551	rs2428577	C	T	10262.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chrX	133511988	rs5978001	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	133549035	rs192977933	T	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chrX	133680547	rs757309	G	A	328.82	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chrX	133905398	rs146817486	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:27,97:0.78:124
chrX	133955274	.	TAA	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.100;QD=6.12;ReadPosRankSum=1.407;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	134025421	rs369970722	GA	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.649;QD=2.58;ReadPosRankSum=0.631;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:54,27:0.33:81
chrX	134025744	rs6529648	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	134125475	rs11739	C	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	134156121	rs2475853	G	C	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:52,161:0.76:213
chrX	134185997	rs2498776	T	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:33,98:0.75:131
chrX	134294325	rs3813155	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	134305127	rs372907302	G	A	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.359;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:290,96:0.25:386
chrX	134383090	.	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DP=769;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-4.399;QD=0.56;ReadPosRankSum=1.247;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:663,106:0.14:769
chrX	134425410	rs78544936	C	T	6361.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:128,301:0.70:429
chrX	134483151	rs2286479	C	T	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	134493961	.	G	GA	30	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.9998;HP=9;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=30;QD=22.0;SC=ATACTAGTGGGAAAAAAAAAG;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=134493969;WS=134493951;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chrX	134685908	rs12391668	A	T	1957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.746;QD=13.50;ReadPosRankSum=1.622;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:43,102:0.70:145
chrX	134708007	rs72290283	C	CT	1219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=8.71;ReadPosRankSum=3.380;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:48,92:0.66:140
chrX	134708091	rs5975544	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chrX	134948034	rs2034920	A	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	134992554	rs5975631	A	G	5708.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:123,261:0.68:384
chrX	135049691	.	CATT	C	374.73	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chrX	135055694	rs6635201	T	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	135056299	rs5974575	G	A	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	135080623	rs370833071	C	CT	933.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.497;QD=14.82;ReadPosRankSum=2.125;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:10,53:0.84:63
chrX	135092595	rs17001258	C	T	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.282;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:410,92:0.18:502
chrX	135104864	rs6654310	G	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.340;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:256,69:0.21:325
chrX	135252234	rs3215593	AC	A	3875.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	135289118	rs73633451	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chrX	135292022	rs2076705	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	135307049	rs5929742	G	A	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	135310785	rs2273221	T	C	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chrX	135313034	rs1055497	T	G	18379.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chrX	135322440	rs5975706	A	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	135323452	rs5975707	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	135333608	.	TGGGCG	T	333.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chrX	135338312	rs5975709	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chrX	135390818	rs5930928	T	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chrX	135426693	rs4829829	A	G	8630.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chrX	135426968	rs5930931	C	A	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chrX	135429503	rs4829830	C	A	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chrX	135430044	rs877761	T	C	19206.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:0,749:1.00:749
chrX	135430483	rs912002	T	C	17229.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chrX	135431236	rs5930932	T	C	11929.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chrX	135431358	rs5930933	C	T	25724.77	.	AC=2;AF=1.00;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	1/1:0,1001:1.00:1001
chrX	135435475	rs5903915	AT	A	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	135438388	rs6635268	A	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	135474420	rs1329546	C	A	8490.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chrX	135474444	rs34255702	AGAT	A	17986.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chrX	135480126	rs5974595	T	C	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chrX	135496398	rs5930942	G	A	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.15;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chrX	135574366	rs148325947	G	T	10886.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:128,485:0.79:613
chrX	135592205	rs59651028	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chrX	135618224	rs3027859	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.199;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:170,43:0.20:213
chrX	135630678	.	TA	T	1358.73	.	AC=1;AF=0.500;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	0/1:26,81:0.76:107
chrX	135732636	rs3092943	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	135741185	rs3092923	T	C	13325.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chrX	135767738	rs146778359	C	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	135767763	.	C	CA	281.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.191;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chrX	135819719	rs561435	C	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.26;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	135958875	.	G	GTT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.416;QD=1.17;ReadPosRankSum=-1.708;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chrX	135961585	.	A	AT	99.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.171;QD=0.57;ReadPosRankSum=0.271;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:140,34:0.20:174
chrX	135961586	rs201673579	TG	T	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.820;QD=0.21;ReadPosRankSum=-1.861;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:143,31:0.18:174
chrX	135961587	rs2011584	G	T	2512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.037;QD=14.44;ReadPosRankSum=1.712;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:46,128:0.74:174
chrX	136112956	rs73566014	G	A	12706.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chrX	137749997	rs5976185	A	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	137791130	rs149086587	T	C	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:44,155:0.78:199
chrX	137821483	rs143933134	A	G	4624.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:77,220:0.74:297
chrX	137821618	rs140737419	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chrX	138067202	rs34825181	A	G	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.893;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:333,99:0.23:432
chrX	138067368	rs5974786	G	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.144;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:124,34:0.22:158
chrX	138667452	rs5909018	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.255;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chrX	138670026	rs367703808	TCA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=1.030;QD=5.09;ReadPosRankSum=0.377;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chrX	138689704	rs41300934	T	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.193;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chrX	138698652	rs68033160	GA	G	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.459;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chrX	138698665	rs5909056	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.408;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:62,13:0.17:75
chrX	138712130	rs9887411	T	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chrX	138713463	rs56186070	G	GT	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.248;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:81,39:0.33:120
chrX	138714442	rs138691465	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chrX	138714548	rs146379496	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-2.748;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:196,45:0.19:241
chrX	138724725	rs926563	G	A	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	138774209	rs4824861	C	T	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chrX	138811003	rs2094702	G	A	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	138825675	rs1268015	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	138840029	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.629;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chrX	138864932	rs374315625	GA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=2.046;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chrX	138882028	rs57605669	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	138882113	.	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=0.628;QD=0.59;ReadPosRankSum=0.858;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chrX	138882172	rs10717380	AC	A	1582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.887;QD=11.31;ReadPosRankSum=2.301;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:46,94:0.67:140
chrX	138886577	rs7891920	G	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chrX	138897130	rs2491014	A	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	139038443	rs5955139	G	A	13969.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chrX	139038968	rs5953892	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	139099429	rs5907565	T	G	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	139099574	rs201705815	AAAG	A	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.76;MQRankSum=1.487;QD=26.76;ReadPosRankSum=-0.498;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chrX	139099828	rs5909002	T	A	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	139298612	rs411420	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.086;QD=1.71;ReadPosRankSum=1.701;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:53,13:0.20:66
chrX	139587099	rs73637709	C	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.334;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:136,35:0.20:171
chrX	140008385	rs5907732	G	T	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.379;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:41,86:0.68:127
chrX	140008515	rs5907733	C	T	382.98	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chrX	140271268	rs2038375	G	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.559;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:163,47:0.22:210
chrX	140785714	rs5953618	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-5.397;QD=0.20;ReadPosRankSum=-2.654;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:145,21:0.13:166
chrX	140785917	rs373835085	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chrX	140953078	rs1120947	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	140967165	rs11095909	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.303;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:188,70:0.27:258
chrX	140967295	rs113184895	G	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chrX	140983031	rs176023	A	G	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	140983064	rs176024	G	A	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chrX	140983103	rs176025	C	T	10973.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chrX	140983127	rs176026	G	A	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.329;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:353,103:0.23:456
chrX	140993264	rs176036	G	A	10932.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:162,490:0.75:652
chrX	140993586	rs73638716	G	A	8633.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:126,364:0.74:490
chrX	140993642	rs176037	C	T	6771.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:101,290:0.74:391
chrX	140993877	.	C	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=44;MMLQ=26;NF=49;NR=69;PP=2962;QD=20;SC=AGGGTTTTGCCCAGTCTCCTC;SbPval=0.83;Source=Platypus;TC=352;TCF=173;TCR=179;TR=118;WE=140993885;WS=140993832;set=Platypus	GT:AD:AF:DP	0/1:234,118:0.34:352
chrX	140993912	.	C	T	2444	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=48;MMLQ=27;MQ=52.17;NF=62;NR=70;PP=2444;QD=18.778569792;SC=AGCCCCTCCTCCTCCTCCACT;SbPval=0.6;Source=Platypus;TC=258;TCF=124;TCR=134;TR=132;WE=140993955;WS=140993895;set=Platypus	GT:AD:AF:DP	0/1:126,132:0.51:258
chrX	140993945	.	TCT	CCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=48;MMLQ=27;MQ=49.89;NF=23;NR=41;PP=2944;QD=20;SC=TTCCAGAGTTTCTCTGAGAGA;SbPval=0.83;Source=Platypus;TC=195;TCF=86;TCR=109;TR=64;WE=140993955;WS=140993895;set=Platypus	GT:AD:AF:DP	0/1:131,64:0.33:195
chrX	140994171	rs176047	C	G	15629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-2.590;QD=16.18;ReadPosRankSum=0.168;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:258,708:0.73:966
chrX	140994591	rs176048	C	G	14218.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:225,630:0.74:855
chrX	141290865	rs3765272	C	T	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:76,219:0.74:295
chrX	142121729	rs4825148	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chrX	142121876	rs10482390	A	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:191,70:0.27:261
chrX	142717443	rs147741797	G	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.911;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:255,57:0.18:312
chrX	142718628	rs142360999	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:173,68:0.28:241
chrX	142795225	rs3859898	G	A	7053.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:107,321:0.75:428
chrX	142803571	rs851092	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	142967188	rs41300922	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.730;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:124,36:0.23:160
chrX	142967468	rs237520	T	G	4726.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:66,202:0.75:268
chrX	144904252	rs3810704	G	A	6782.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:120,296:0.71:416
chrX	144904882	rs2748588	T	C	11787.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chrX	146312362	rs5905008	A	G	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:65,173:0.73:238
chrX	146312603	rs144088020	A	AAT	5560.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:42,144:0.77:186
chrX	146312673	rs5905009	G	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chrX	146312683	rs375595449	TA	T	630.75	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:4,35:0.90:39
chrX	146340338	rs36092315	CT	C	6441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=3.395;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=1.688;QD=17.70;ReadPosRankSum=-2.866;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:165,199:0.55:364
chrX	146342020	rs200823250	A	AAC	3243.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chrX	146342251	rs7885181	C	T	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:43,126:0.75:169
chrX	146354025	rs5904728	GT	AC	8798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.542;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.85;ReadPosRankSum=-0.653;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:87,218:0.71:305
chrX	147003564	rs1270092	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	147010320	rs25707	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=2.471;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:268,73:0.21:341
chrX	147014960	rs4824232	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	147015021	rs4824233	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	147019606	rs370079718	A	G	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.622;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:330,112:0.25:442
chrX	147026330	rs11293471	AC	A	240.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	147090276	rs6626977	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.470;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chrX	147719592	rs5980554	G	T	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chrX	147733265	rs5904246	G	GA	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.23;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	147891558	rs11117555	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	147919063	rs375432534	CAGTTA	C	2021.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	148035200	rs12011040	G	A	15213.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chrX	148035342	rs201614783	CAG	C	189.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=2.406;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chrX	148035344	rs12011971	G	C	896.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-2.577;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chrX	148037096	rs41300321	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:123,38:0.24:161
chrX	148048207	rs111499310	CTT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.344;QD=3.68;ReadPosRankSum=1.585;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chrX	148048237	rs12007454	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,18:0.24:74
chrX	148049264	rs16994895	T	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.308;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chrX	148055144	rs5980615	A	G	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	148582350	rs139515077	CATT	C	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chrX	148582414	rs150285775	C	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:25,103:0.80:128
chrX	148582549	rs1141608	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.683;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:271,52:0.16:323
chrX	148615881	.	C	T	259.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:74,19:0.20:93
chrX	148622730	rs3747443	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.629;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chrX	148622745	rs3747442	T	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.779;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:110,29:0.21:139
chrX	148622954	rs34492506	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chrX	148627384	rs145921071	A	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=29.74;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	148628490	.	A	T	1140.77	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.14;QD=28.52;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	148713162	rs146441287	G	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.012;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:114,24:0.17:138
chrX	148713418	.	T	TCGCCGC	5283.73	.	AC=1;AF=0.500;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	0/1:41,141:0.77:182
chrX	148798223	rs2233050	T	C	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	149013727	rs5983916	A	G	17387.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:2,676:1.00:678
chrX	149114101	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.442;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chrX	149613617	rs6526057	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	149630848	rs507156	T	C	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149637925	.	CTGTG	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.150;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chrX	149680221	rs659188	G	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	149680554	rs2070779	C	T	22015.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,842:1.00:842
chrX	149783034	rs73620649	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chrX	149807569	rs16995740	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=1.045;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:193,44:0.19:237
chrX	149807590	.	C	T	3091.77	.	AC=1;AF=0.500;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:34,138:0.80:172
chrX	149826503	rs222410	G	A	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	149862013	.	CCGG	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=3.101;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chrX	149862214	rs222346	A	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	149882740	rs139131105	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chrX	149883042	.	C	T	3163.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:47,139:0.75:186
chrX	149887054	.	TC	T	45.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.50;ReadPosRankSum=1.383;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chrX	149887056	.	C	T	1236	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=20;HapScore=1;MGOF=14;MMLQ=18;MQ=55.83;NF=67;NR=0;PP=1236;QD=18.9667345156;SC=GTTTGGTGTCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=101;TCF=74;TCR=27;TR=67;WE=149887064;WS=149887046;set=Platypus	GT:AD:AF:DP	1/1:34,67:0.66:101
chrX	149896019	rs3747313	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	149898765	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.598;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chrX	149931106	rs16995747	C	T	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:62,201:0.76:263
chrX	149937404	rs41311690	T	C	1542.84	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:8,66:0.89:74
chrX	149938662	rs112155432	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.772;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chrX	150336814	rs644345	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	150348228	rs1202874	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:79,30:0.28:109
chrX	150348641	rs202126801	C	A	14648.77	.	AC=1;AF=0.500;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	0/1:237,671:0.74:908
chrX	150349533	rs62620754	G	A	3704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.627;QD=3.17;ReadPosRankSum=-1.383;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:895,273:0.23:1168
chrX	150349557	rs68058591	CCACCACTGGCCA	C	7428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.367;ClippingRankSum=0.000;DB;DP=1399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=4.624;QD=5.45;ReadPosRankSum=2.604;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:1104,259:0.19:1363
chrX	150349649	rs561077	A	G	4810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=1844;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.899;QD=2.64;ReadPosRankSum=0.066;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1426,396:0.22:1822
chrX	150565330	rs176451	G	C	18688.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chrX	150565560	.	G	T	300	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=2;HapScore=3;MGOF=21;MMLQ=20;MQ=60.0;NF=0;NR=10;PP=300;QD=33.4771212547;SC=CCCCCGCGCCGGCAACAGCCC;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=10;WE=150565568;WS=150565539;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	150565923	rs146314148	T	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:24,76:0.76:100
chrX	150573324	rs189904013	T	G	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.486;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,70:0.77:91
chrX	150770241	rs16996032	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	150794129	rs142544047	A	AC	835.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chrX	150817220	rs62609303	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.217;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:141,38:0.21:179
chrX	150840597	rs7886849	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.914;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chrX	150840916	rs41299110	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.169;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:121,46:0.28:167
chrX	150868761	rs41301309	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:24,73:0.75:97
chrX	150868861	rs41302168	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chrX	150869267	rs4323608	A	G	13570.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:2,509:1.00:511
chrX	150873651	rs3761541	G	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chrX	150884620	rs3810715	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.471;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chrX	150889857	rs72612761	C	T	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-2.028;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:41,134:0.77:175
chrX	150890023	.	TG	T	678.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chrX	150906999	rs142562634	A	C	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.577;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:219,72:0.25:291
chrX	150907240	rs7066992	T	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	150909162	rs7881014	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chrX	150911149	rs7889492	G	C	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:53,128:0.71:181
chrX	150912995	rs201215466	AGCATTG	A	438.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chrX	151092126	rs1047246	C	G	5542.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:90,250:0.74:340
chrX	151092220	rs1047248	A	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	151092653	rs1047251	G	A	10004.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chrX	151123714	rs185630268	G	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.135;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:112,38:0.25:150
chrX	151123722	.	CCTGGGTAACATTCCATCA	C	899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=1.698;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chrX	151124010	rs112646382	A	G	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:171,79:0.32:250
chrX	151125971	rs763539	A	G	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:58,155:0.73:213
chrX	151129822	rs2256882	G	A	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	151138179	rs1139916	A	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	151142982	rs7341952	G	T	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chrX	151303393	rs210586	C	T	9945.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chrX	151303596	rs210585	C	T	1954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.507;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:415,141:0.25:556
chrX	151424488	rs60207108	G	GA	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.699;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:89,27:0.23:116
chrX	151514195	rs3830670	G	GA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.921;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chrX	151818156	.	TTC	T	53	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=2;MGOF=55;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=53;QD=79.0;SC=TTTTGTGCTTTTCTTTCTTTC;SbPval=1.0;Source=Platypus;TC=9;TCF=1;TCR=8;TR=1;WE=151818165;WS=151818146;set=Platypus	GT:AD:AF:DP	0/1:8,1:0.11:9
chrX	151899760	rs2515830	A	G	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	151899789	rs3005	G	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.735;QD=2.47;ReadPosRankSum=0.537;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:249,66:0.21:315
chrX	151899818	rs2233056	C	T	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.128;QD=3.19;ReadPosRankSum=-1.431;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:406,128:0.24:534
chrX	151899913	rs2233055	T	C	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=2.011;QD=3.15;ReadPosRankSum=1.056;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:759,237:0.24:996
chrX	151900630	rs16996512	C	G	7099.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:113,317:0.74:430
chrX	151904488	rs2515838	C	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.998;QD=2.48;ReadPosRankSum=-0.935;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chrX	151904609	rs2471781	T	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.011;QD=1.34;ReadPosRankSum=-0.638;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:211,45:0.18:256
chrX	151908791	rs149025179	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.621;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:115,22:0.16:137
chrX	151909156	rs2515848	A	G	13732.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:152,611:0.80:763
chrX	151997273	rs2301188	A	C	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	151998340	rs3213467	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.152;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chrX	151999240	rs192767165	G	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:23,80:0.78:103
chrX	152018832	rs5969919	T	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.399;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chrX	152083006	rs6526140	G	C	10208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=1.261;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:102,255:0.71:357
chrX	152083012	rs6526141	G	A	10158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.78;ReadPosRankSum=1.442;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:101,252:0.71:353
chrX	152083059	rs6526142	G	A	4478.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:72,207:0.74:279
chrX	152083089	rs6526143	T	G	3039.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:47,136:0.74:183
chrX	152087420	rs16996799	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	152089039	rs2071258	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.473;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:118,32:0.21:150
chrX	152090551	rs2071259	T	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.159;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:115,27:0.19:142
chrX	152091153	rs2071261	A	C	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chrX	152096974	rs143532916	G	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chrX	152106761	rs193238890	G	C	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:29,109:0.79:138
chrX	152106850	rs5969927	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	152110276	rs80343056	C	T	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.518;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:316,108:0.25:424
chrX	152110301	rs12012933	A	G	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.457;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:285,87:0.23:372
chrX	152134160	rs2071250	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	152135526	rs148720890	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chrX	152226542	rs6526155	T	C	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:46,218:0.83:264
chrX	152609450	rs3213462	T	C	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	152609668	rs3213463	T	C	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	152610051	rs1467880	A	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	152610108	rs1467881	G	C	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	152610224	rs35024993	CGTGACCTCT	C	6472.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	152610294	rs1467882	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	152610947	rs3213465	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	152610985	rs3213466	T	C	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:31,133:0.81:164
chrX	152611190	.	GGGGGTCCCAGCTGAGCTCTTGGAGTTGAGGTTAGGGTTT	G	2734	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=27;MQ=65.41;NF=0;NR=12;PP=2734;QD=20;SC=GGTTAGGGTTGGGGGTCCCAG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=12;WE=152611236;WS=152611180;set=Platypus	GT:AD:AF:DP	1/1:2,12:0.86:14
chrX	152612389	rs62642555	C	T	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.010;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:341,118:0.26:459
chrX	152613112	rs7066295	C	T	14920.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:1,554:1.00:555
chrX	152683922	rs147233966	G	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chrX	152710265	rs35639416	C	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-2.020;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:154,42:0.21:196
chrX	152710388	rs34136705	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.332;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:115,33:0.22:148
chrX	152710630	rs141078733	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.027;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:191,45:0.19:236
chrX	152719969	rs371637396	GGGGAGGGA	GGGGA,G	5710.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=497;set=Intersection	GT:AF:DP	1/1:0.93:257
chrX	152727446	rs3020966	T	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chrX	152727535	rs138590468	TA	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.108;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chrX	152728003	rs3020967	T	C	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=1.984;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chrX	152728155	rs2980032	T	C	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.443;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:353,108:0.23:461
chrX	152728288	rs5987203	G	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.296;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chrX	152730603	rs73640040	T	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chrX	152734483	rs10126230	G	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chrX	152747709	rs111767146	AG	A	6357.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:74,222:0.75:296
chrX	152747816	rs5987251	T	A	21148.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:0,809:1.00:809
chrX	152748308	rs56993978	G	A	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:30,108:0.78:138
chrX	152751319	rs200462270	G	GACCACATC	5353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.606;QD=9.72;ReadPosRankSum=2.757;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:395,156:0.28:551
chrX	152770402	rs2980053	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.055;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:107,35:0.25:142
chrX	152771214	rs11363938	GA	G	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	152773688	rs55934508	C	T	4820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=-0.998;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:112,219:0.66:331
chrX	152807425	rs762733	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.668;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chrX	152807665	rs2980012	A	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	152807923	rs2980013	G	C	11573.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:1,456:1.00:457
chrX	152815089	rs3020949	A	G	16430.77	.	AC=1;AF=0.500;AN=2;DB;DP=1055;set=Intersection	GT:AD:AF:DP	0/1:288,759:0.72:1047
chrX	152821887	rs3020957	C	T	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=0.174;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:22,69:0.76:91
chrX	152821896	rs2269414	C	T	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.91;ReadPosRankSum=0.781;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:17,54:0.76:71
chrX	152825414	rs3020959	G	T	8075.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:97,359:0.79:456
chrX	152825433	rs2980018	A	G	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:76,259:0.77:335
chrX	152830322	rs4243536	A	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	152857820	rs2280925	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.000;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chrX	152861390	rs2294104	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:87,26:0.23:113
chrX	152861730	rs56412501	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:84,29:0.26:113
chrX	152864477	rs199537978	G	GC	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	152864513	rs200645137	G	GC	281.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	152864609	rs201833882	G	GC	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	152938409	.	T	TAC	6152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.003;QD=13.67;ReadPosRankSum=-0.552;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:209,241:0.54:450
chrX	152954025	rs384573	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=24.97;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	153005522	rs149185761	C	G	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-3.389;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:156,44:0.22:200
chrX	153031839	rs731416	TG	CC	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-0.404;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:428,99:0.19:527
chrX	153032699	rs111247447	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:126,34:0.21:160
chrX	153032762	rs112274376	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:154,58:0.27:212
chrX	153033440	rs5986930	T	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.511;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:179,51:0.22:230
chrX	153034688	rs34012054	G	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=2.690;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:137,36:0.21:173
chrX	153034752	rs2266877	C	T	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	153034768	rs113517298	C	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chrX	153036727	rs187552839	G	C	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:93,212:0.70:305
chrX	153036884	rs2266880	C	T	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:281,101:0.26:382
chrX	153036897	rs57190308	G	A	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:261,104:0.28:365
chrX	153036957	rs17091287	C	T	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:93,201:0.68:294
chrX	153037201	.	A	G	175.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chrX	153037212	rs141337703	C	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	153037275	rs6643644	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	153037578	.	G	GGGTGGAGAAGGTGCGCTCGGTAGCAGCT	830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=3.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.002;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:183,20:0.10:203
chrX	153037594	rs11156607	C	G	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chrX	153037779	rs2266881	G	A	14511.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:2,546:1.00:548
chrX	153037999	rs2266883	G	C	426.79	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chrX	153038101	rs2266884	G	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	153038516	rs5945161	C	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	153038661	rs2266885	G	C	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chrX	153039502	rs6643791	G	C	16553.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chrX	153039615	rs1543781	A	G	12690.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,492:1.00:494
chrX	153041544	rs5987155	T	C	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chrX	153041971	.	GGGCAGGGCGGGGCTGGGGCGGGGCGA	G	2483	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=1;MGOF=34;MMLQ=18;MQ=61.93;NF=1;NR=28;PP=2483;QD=86.5172413793;SC=GGGCGAGGCAGGGCAGGGCGG;SbPval=0.59;Source=Platypus;TC=65;TCF=2;TCR=63;TR=29;WE=153042004;WS=153041961;set=Platypus	GT:AD:AF:DP	0/1:36,29:0.45:65
chrX	153041985	.	TGGGGC	T	3580.73	.	AC=2;AF=1.00;AN=2;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.18;QD=37.69;SOR=1.489;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	153041997	.	AGGCAGGGCGGGGCTGGGGCGG	A	3674.73	.	AC=2;AF=1.00;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.70;QD=36.75;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	153042018	.	G	A	1186	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=3;HapScore=1;MGOF=86;MMLQ=24;MQ=64.78;NF=10;NR=41;PP=1186;QD=23.9366904421;SC=GGCTGGGGCGGGGCGAGGCAG;SbPval=0.48;Source=Platypus;TC=54;TCF=10;TCR=44;TR=51;WE=153042026;WS=153042008;set=Platypus	GT:AD:AF:DP	1/1:3,51:0.94:54
chrX	153042237	rs1894294	G	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153042419	rs34966902	G	A	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chrX	153047809	rs1981439	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	153048403	rs916001	T	C	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.039;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:310,115:0.27:425
chrX	153048647	rs201302475	GT	G	9449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.541;QD=25.13;ReadPosRankSum=3.114;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:86,290:0.77:376
chrX	153048656	rs201877372	CA	C	4516.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.648;QD=13.98;ReadPosRankSum=0.615;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:97,226:0.70:323
chrX	153048657	rs2314343	A	C	897.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=7.238;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.486;QD=2.78;ReadPosRankSum=-1.529;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:263,60:0.19:323
chrX	153049389	rs3969088	A	G	5240.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.12;ReadPosRankSum=1.575;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:2,172:0.99:174
chrX	153049389	.	AGA	GGA,GGG	1715	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=54;MMLQ=27;MQ=59.88;NF=71,13;NR=34,3;PP=1715,110;QD=16.6644877385;SC=AAAGGCTGCAAGACATCTGCT;SbPval=0.51;Source=Platypus;TC=106;TCF=72;TCR=34;TR=105,16;WE=153049399;WS=153049379;set=Platypus	GT:AF:DP	0/1:0.99:106
chrX	153049391	rs7052332	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.011;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:152,32:0.17:184
chrX	153049535	rs4898444	A	G	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.746;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:764,179:0.19:943
chrX	153050984	rs1802092	G	A	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.970;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:128,45:0.26:173
chrX	153051907	rs2071122	G	A	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-2.278;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:305,75:0.20:380
chrX	153052649	rs2071123	C	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chrX	153052661	rs2269482	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	153053698	rs72198906	T	TG	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.281;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chrX	153056172	rs17429	C	T	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:57,231:0.80:288
chrX	153061775	rs2239714	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:52,14:0.21:66
chrX	153073752	rs3761532	T	C	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chrX	153095630	rs7891621	C	A	9347.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:159,419:0.72:578
chrX	153129038	rs7052999	G	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:149,76:0.34:225
chrX	153129285	rs137915897	G	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.004;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:311,93:0.23:404
chrX	153141264	rs144605615	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.140;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chrX	153146400	rs5945361	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	153149117	rs193118116	G	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.857;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chrX	153149118	rs5945167	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	153149170	rs142085600	G	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.934;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.290;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:133,51:0.28:184
chrX	153149708	rs77883713	G	GC	10840.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chrX	153149715	rs6643650	C	G	10624.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	153150791	rs12156710	C	T	15760.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chrX	153150929	rs41311376	G	A	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chrX	153151277	rs56026845	C	G	8701.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=43.08;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	153151280	rs143464562	G	GCC	8658.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.10;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chrX	153151284	rs199975679	GT	G	8171.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=46.43;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chrX	153151423	rs58566947	G	GCGGC	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	153151456	rs12837217	T	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	153151461	rs12837218	T	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	153151467	rs199929222	CG	C	221.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	153151491	rs36095229	GT	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	153153839	rs5987175	C	T	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chrX	153170447	rs55712963	G	GC	2783.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	153170980	rs56689668	T	G	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	153170995	rs2071126	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:130,46:0.26:176
chrX	153171993	rs5201	A	G	25198.77	.	AC=2;AF=1.00;AN=2;DB;DP=967;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,954:1.00:954
chrX	153172059	rs5202	C	T	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.979;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:565,176:0.24:741
chrX	153174819	rs11394527	T	TG	36325.73	.	AC=2;AF=1.00;AN=2;DB;DP=1034;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=35.68;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,1018:1.00:1018
chrX	153174852	rs113896893	A	G	16798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-0.196;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:238,773:0.76:1011
chrX	153174867	rs11405331	T	TG	23758.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.095;QD=26.19;ReadPosRankSum=-0.112;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:2,905:1.00:907
chrX	153175053	rs56015121	G	GC	3472.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	153175586	rs3213440	G	C	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:59,182:0.76:241
chrX	153176254	rs2070097	A	G	6637.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:78,307:0.80:385
chrX	153178459	rs5904376	G	GC	5615.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	153186412	rs34153599	A	AG	6086.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	153186484	rs11428457	T	TC	7078.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chrX	153186942	rs5987182	G	A	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:78,249:0.76:327
chrX	153202650	.	AAAATAAATAAAT	A,AAAATAAAT	782.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=29;set=Intersection	GT:AF:DP	1/2:0.50,0.42:24
chrX	153208197	rs11372702	T	TG	2149.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	153210179	rs146096296	T	TG,TGGGGGGGGG	2868.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=135;set=Intersection	GT:AF:DP	1/2:0.86,0.13:95
chrX	153210184	.	C	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=41.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-2.846;SOR=4.396;set=HC	GT:AD:AF:DP	0/1:83,8:0.09:91
chrX	153210194	.	A	AG	298	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=11;MMLQ=26;MQ=59.47;NF=0;NR=21;PP=298;QD=16.2380952381;SC=CGGGGCTTTGAGCCCGACCCC;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=21;WE=153210202;WS=153210184;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chrX	153210195	.	GCCC	G	877.73	.	AC=2;AF=1.00;ALERT;AN=2;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.51;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chrX	153210199	.	GAC	G	875.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.43;ReadPosRankSum=0.065;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chrX	153277889	rs2239673	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	153278829	rs1059703	G	A	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chrX	153279822	.	TAAAA	T	2045.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.053;MLEAC=2;MLEAF=1.000;MQ=61.09;MQRankSum=0.792;QD=35.89;ReadPosRankSum=2.611;SOR=0.080;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chrX	153279858	rs5945174	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	153284192	rs1059702	A	G	13454.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chrX	153284483	rs1059701	G	A	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.098;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:156,42:0.21:198
chrX	153296596	rs61749738	G	C	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=1118;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.694;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:880,217:0.20:1097
chrX	153416346	rs77453588	A	G	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:68,123:0.64:191
chrX	153416478	.	T	C	184.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.49;QD=36.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	153416484	.	A	G	213.84	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=42.77;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	153418524	rs149897670	C	T	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:64,137:0.68:201
chrX	153420176	rs78093925	A	G	12271.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:229,572:0.71:801
chrX	153421912	rs1065439	T	C	13273.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:176,588:0.77:764
chrX	153445442	rs138468650	G	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.00;QD=21.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	153482563	rs138416189	G	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.32;QD=28.80;SOR=2.219;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	153490611	rs138183015	A	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=46.34;MQRankSum=-7.056;QD=1.85;ReadPosRankSum=0.992;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:142,35:0.20:177
chrX	153533645	rs201301377	C	CT	5478.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:59,169:0.74:228
chrX	153540977	rs17174296	A	G	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.386;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:373,105:0.22:478
chrX	153551733	rs61545422	G	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:230,95:0.29:325
chrX	153553597	rs5987246	C	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-2.130;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:146,24:0.14:170
chrX	153553781	rs4898475	G	A	7504.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:101,339:0.77:440
chrX	153553926	rs73629196	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chrX	153577100	rs149379012	G	A	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:39,128:0.77:167
chrX	153578299	rs2070819	A	G	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:63,223:0.78:286
chrX	153578508	rs12008807	G	A	8623.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:117,388:0.77:505
chrX	153579448	rs2070822	A	G	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	153580676	rs1064822	C	G	13104.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:166,599:0.78:765
chrX	153581932	rs2070825	A	G	8371.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:121,385:0.76:506
chrX	153582198	rs2070826	T	C	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chrX	153582703	rs2070827	G	A	7332.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:105,325:0.76:430
chrX	153585695	rs148308896	G	A	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:40,139:0.78:179
chrX	153585827	rs61741041	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.881;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:181,52:0.22:233
chrX	153588343	rs144968452	G	A	16048.77	.	AC=1;AF=0.500;AN=2;DB;DP=952;set=Intersection	GT:AD:AF:DP	0/1:219,718:0.77:937
chrX	153592918	rs34510365	C	T	7512.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:83,334:0.80:417
chrX	153593150	rs743545	G	A	34936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.015;ClippingRankSum=0.000;DB;DP=2023;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.46;ReadPosRankSum=1.724;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:437,1564:0.78:2001
chrX	153609258	rs144594695	G	A	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.456;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:510,168:0.25:678
chrX	153626649	rs915941	A	C	9556.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:161,436:0.73:597
chrX	153626738	rs915942	G	A	7965.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:165,367:0.69:532
chrX	153633359	rs1130929	G	C	10525.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:165,486:0.75:651
chrX	153633953	rs1050094	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	153637305	rs2070807	T	C	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:32,81:0.72:113
chrX	153657083	rs28497482	A	G	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chrX	153657133	.	T	TGGCGGC	1367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=7.050;QD=5.30;ReadPosRankSum=-3.483;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:206,52:0.20:258
chrX	153657458	rs74526112	A	G	3743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=1138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.405;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:857,270:0.24:1127
chrX	153660070	rs3737557	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	153663372	rs113612593	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:95,37:0.28:132
chrX	153663458	rs73638280	A	G	9507.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:139,445:0.76:584
chrX	153665794	rs189578067	A	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	153666533	rs73638281	C	G	7697.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:4,315:0.99:319
chrX	153667176	rs4834	T	C	1778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.324;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:429,138:0.24:567
chrX	153668022	rs370252579	CA	C	477.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.401;QD=15.92;ReadPosRankSum=-1.041;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chrX	153668172	rs68141802	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	153668919	rs147069323	G	A	5984.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:63,261:0.81:324
chrX	153670448	rs141599363	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-2.709;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:134,33:0.20:167
chrX	153672537	.	G	GCCGCCGCCGCCGC	1227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.000;QD=31.48;ReadPosRankSum=0.610;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chrX	153677700	rs2070643	T	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.955;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:172,53:0.24:225
chrX	153690397	rs5986979	T	A	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	153690709	rs72227759	CTGG	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.016;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:31,4:0.11:35
chrX	153691888	rs5987264	C	G	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chrX	153693811	rs5945429	C	T	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chrX	153694334	rs5945430	C	G	15648.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chrX	153694968	.	G	A	7946.77	.	AC=1;AF=0.500;AN=2;DP=451;set=Intersection	GT:AD:AF:DP	0/1:98,338:0.78:436
chrX	153695306	rs113586437	G	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chrX	153695908	rs60361517	G	T	9079.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:85,400:0.82:485
chrX	153696247	rs5987266	G	C	15246.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chrX	153696913	rs7886727	C	T	33814.77	.	AC=2;AF=1.00;AN=2;DB;DP=1319;set=Intersection	GT:AD:AF:DP	1/1:0,1293:1.00:1293
chrX	153697347	rs5986981	C	T	16435.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:2,629:1.00:631
chrX	153699364	rs5987267	G	C	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	153706264	rs6567	C	G	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:16,84:0.84:100
chrX	153713787	rs7057286	C	T	13230.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chrX	153714030	rs5945433	G	T	10984.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:3,428:0.99:431
chrX	153714785	rs12392491	T	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	153716491	rs7877194	C	T	10917.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:114,483:0.81:597
chrX	153760429	rs77214077	G	A	7721.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:92,343:0.79:435
chrX	153760508	rs2071429	A	G	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chrX	153763492	rs1050829	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:141,58:0.29:199
chrX	153764528	rs762515	T	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.405;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chrX	153880830	rs4326559	A	C	21279.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,829:1.00:829
chrX	153880880	rs5987003	G	C	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.153;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:494,158:0.24:652
chrX	153881525	rs17328091	G	C	28656.77	.	AC=2;AF=1.00;AN=2;DB;DP=1145;set=Intersection	GT:AD:AF:DP	1/1:0,1107:1.00:1107
chrX	153881552	rs61731293	C	T	15445.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:265,713:0.73:978
chrX	153906377	rs371001859	CA	C	1830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.051;QD=8.80;ReadPosRankSum=2.495;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:50,158:0.76:208
chrX	153984215	.	CA	C	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.415;QD=8.35;ReadPosRankSum=1.727;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chrX	153994596	rs2728532	G	T	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chrX	154001559	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.457;QD=2.83;ReadPosRankSum=-1.022;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chrX	154009617	rs11318110	AG	A	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chrX	154059109	rs12009271	A	G	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chrX	154088838	rs1800297	T	C	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chrX	154130223	rs4074307	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	154132090	rs4898352	A	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	154158285	rs1800291	G	C	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chrX	154299993	rs147862044	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-2.391;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:123,42:0.25:165
chrX	154456644	rs57301248	AT	A	3550.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:16,205:0.93:221
chrX	154456747	rs572013	A	G	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chrX	154507173	rs559165	T	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	154721340	.	C	CA	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-6.509;QD=4.43;ReadPosRankSum=1.209;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:76,55:0.42:131
chrY	13309624	rs79101133	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrY	13309629	rs80331516	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrY	13309804	rs62599708	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.07;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrY	13310525	rs76988723	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.15;QD=47.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrY	13310531	.	CC	AG	376.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=40.49;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrY	13310559	.	T	C	736.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.32;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrY	13310567	rs80348613	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.32;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrY	13310578	rs200185916	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.76;QD=43.51;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrY	13310581	rs201255328	GG	CA	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.76;QD=44.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrY	13310602	rs200323052	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.80;QD=43.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrY	13310606	rs201423743	T	C	1006.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.80;QD=43.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrY	13310607	rs199570822	G	A	1006.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.80;QD=43.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrY	13310610	rs74510459	A	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.80;QD=43.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrY	13310621	rs74943081	C	A	1040.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.03;QD=43.37;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrY	13310622	rs74864464	C	A	1040.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.03;QD=43.37;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrY	13310660	.	G	T	549.77	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.04;QD=27.49;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrY	13310679	rs75367388	A	G	253.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.30;QD=36.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrY	13310683	rs78176760	T	C	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.50;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	13310688	.	TG	T	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.57;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrY	13310691	.	TC	T	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.57;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrY	13310719	rs79308907	G	A	278.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.26;QD=39.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrY	13310721	rs62599741	C	A	278.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.26;QD=39.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrY	13310740	rs75526384	G	A	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.01;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	13310768	rs79431658	G	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.40;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	13310775	rs79927335	A	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.95;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	13310784	rs75891039	T	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.95;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	14107068	rs9650861	A	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14107314	.	T	C	440.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.66;QD=24.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrY	16952335	.	T	C	155.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.58;QD=25.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	16952347	.	T	C	423.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.63;QD=28.25;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrY	21154323	rs10465459	G	A	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	21154466	rs10465460	T	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chrY	21154569	rs17855271	A	G	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.52;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4